Citrus Sinensis ID: 037822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
Protein Sequence
GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHHcccccccEEEcccccccEEEEccccccccccccccEEEcccccccccccHHHHccccccEEEEEcccccccccHHHHHccccccEEEccccccEEEcccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEcccccccccccccEEEccccEEEEEccccccccccccEEEccccEEEEEccccHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHcccccccccccccEEEEEEEcEEccccHHHccccccccEEEcccccccccccHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccEEEEccccccccccccccccccEEEEccccccccccHHHHcccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHHcccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccc
Coil and Loop (DISEMBL)
GEVSDFidglsectnssLLEKLELGFnqlngdlpsslgylknLRYLELWHNsfvgsippsignlTFLKELYLSSnqmngkfpenfgqLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNisshwippfkltfinirscqlgpkfptwlrnqTELTTLVLNnvrisdtipdwfwqLDLTLDELDVAYNElsgsipnslgfrfpatvdlssnsfegplplwsfnvtklylrdnsfsgpiprdfgqkipfltdldisfnslngsvSKSICNLQQLLTLVISnnnlsgeiprLWSNISSLYILDmsnnslsgeipesiGSLLSVRFLILCNnhisgevppslkncsmmdsldlgdnqlsgnipawigesmpslSILRLRsnyfngtippelcklpalhildlshnnlsgiippcvgnfsgmkveppdsvkyegSLQVVLKGSEYVFYTTLYLVNLMdlssnnlsgempVELTRLIHLGtlnlsrnhl
Flexible Loop (DISEMBL)
gevsdfidglseCTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLihlgtlnlsrnhl
Low Complexity Region (SEG)
GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL
Disordered region (IsUnstruct)
*************************************GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL*******
Disordered Region (DISOPRED)
GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL
Disordered Region (DISEMBL)
GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL
Disordered Region (DISPRO)
*EV**FIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	497	2.2.26 [Sep-21-2011]
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.955	0.431	0.324	5e-50
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.919	0.402	0.332	1e-49
Q9LHP4	1141	Receptor-like protein kin	no	no	0.794	0.346	0.371	2e-49
Q9FL28	1173	LRR receptor-like serine/	no	no	0.941	0.398	0.326	1e-48
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.949	0.451	0.313	4e-48
P93194	1109	Receptor-like protein kin	N/A	no	0.947	0.424	0.313	1e-47
Q9C9H7	847	Receptor-like protein 12	no	no	0.965	0.566	0.314	2e-47
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.907	0.360	0.325	3e-47
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.853	0.339	0.328	1e-46
Q9LP24	1120	Probable leucine-rich rep	no	no	0.891	0.395	0.337	6e-46

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  199 bits (505), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 163/503 (32%), Positives = 255/503 (50%), Gaps = 28/503 (5%)

Query: 4   SDFIDG-----LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIP 58
           ++FI G     LS C +   LE L+L  N+ +G +P  L  +  L+ L L  N   GSIP
Sbjct: 100 TNFISGPIPQDLSLCRS---LEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIP 156

Query: 59  PSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE 118
             IGNL+ L+EL + SN + G  P +  +L  + ++    N + G+I  +      +LK 
Sbjct: 157 RQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIP-SEISGCESLKV 215

Query: 119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRI 178
           L L   +EN+ L  ++         LT + +   +L  + P  + N + L  L L+    
Sbjct: 216 LGL---AENL-LEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYF 271

Query: 179 SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPAT-VDLSSNSFEGPLPL---WS 234
           + +IP    +L   +  L +  N+L+G IP  +G    A  +D S N   G +P      
Sbjct: 272 TGSIPREIGKLT-KMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHI 330

Query: 235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294
            N+  L+L +N   GPIPR+ G+ +  L  LD+S N LNG++ + +  L  L+ L + +N
Sbjct: 331 LNLKLLHLFENILLGPIPRELGE-LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDN 389

Query: 295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN 354
            L G+IP L    S+  +LDMS NSLSG IP       ++  L L +N +SG +P  LK 
Sbjct: 390 QLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKT 449

Query: 355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH 414
           C  +  L LGDNQL+G++P  +  ++ +L+ L L  N+ +G I  +L KL  L  L L++
Sbjct: 450 CKSLTKLMLGDNQLTGSLPIEL-FNLQNLTALELHQNWLSGNISADLGKLKNLERLRLAN 508

Query: 415 NNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS 474
           NN +G IPP +GN + +      S +  G +   L         +   +  +DLS N  S
Sbjct: 509 NNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG--------SCVTIQRLDLSGNKFS 560

Query: 475 GEMPVELTRLIHLGTLNLSRNHL 497
           G +  EL +L++L  L LS N L
Sbjct: 561 GYIAQELGQLVYLEILRLSDNRL 583

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 259/526 (49%), Gaps = 69/526 (13%)

Query: 26  FNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENF 85
           +NQL G++P+SLG L++L+YL L  N   G++P +I N + L  L  S N++ G  P  +
Sbjct: 195 YNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAY 254

Query: 86  GQLSAVEVLDLSENQWEGIITETHFRNLS-NLKELALNKQSENISLIFNISSHWIPPFKL 144
           G L  +EVL LS N + G +  + F N S  + +L  N  S+    I    +       L
Sbjct: 255 GALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSD----IVRPETTANCRTGL 310

Query: 145 TFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELS 204
             ++++  ++  +FP WL N   L  L ++    S  IP     L   L+EL +A N L+
Sbjct: 311 QVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLK-RLEELKLANNSLT 369

Query: 205 GSIP----------------NSLGFRFP---------ATVDLSSNSFEGPLPLWSFNVT- 238
           G IP                NSL  + P           + L  NSF G +P    N+  
Sbjct: 370 GEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQ 429

Query: 239 --KLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296
             +L L +N+ +G  P +    +  L++LD+S N  +G+V  SI NL  L  L +S N  
Sbjct: 430 LERLNLGENNLNGSFPVEL-MALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGF 488

Query: 297 SGEIPRLWSNISSLYILDMSNNSLSGE------------------------IPESIGSLL 332
           SGEIP    N+  L  LD+S  ++SGE                        +PE   SL+
Sbjct: 489 SGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLV 548

Query: 333 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY 392
           S+R++ L +N  SGE+P +     ++ SL L DN +SG+IP  IG +  +L +L LRSN 
Sbjct: 549 SLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIG-NCSALEVLELRSNR 607

Query: 393 FNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS 452
             G IP +L +LP L +LDL  NNLSG IPP +   S +     D     G    V+ GS
Sbjct: 608 LMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSG----VIPGS 663

Query: 453 EYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL-IHLGTLNLSRNHL 497
               ++ L  +  MDLS NNL+GE+P  L  +  +L   N+S N+L
Sbjct: 664 ----FSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNL 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 168/452 (37%), Positives = 228/452 (50%), Gaps = 57/452 (12%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
           SE  + S L  L L    ++G+LPSSLG LK L  L ++     G IP  +GN + L +L
Sbjct: 220 SEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDL 279

Query: 71  YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISL 130
           +L  N ++G  P   GQL+ +E L L +N   G I E    N SNLK          I L
Sbjct: 280 FLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPE-EIGNCSNLKM---------IDL 329

Query: 131 IFNISSHWIPPF--KLTFIN---IRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW 185
             N+ S  IP    +L+F+    I   +     PT + N + L  L L+  +IS  IP  
Sbjct: 330 SLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSE 389

Query: 186 FWQLDLTLDELDVAY---NELSGSIPNSLG-FRFPATVDLSSNSFEGPLPLWSF---NVT 238
                 TL +L + +   N+L GSIP  L        +DLS NS  G +P   F   N+T
Sbjct: 390 LG----TLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLT 445

Query: 239 KLYLRDNSFSGPIPRDFG--------------------------QKIPFLTDLDISFNSL 272
           KL L  NS SG IP++ G                          +KI FL   D S N L
Sbjct: 446 KLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFL---DFSSNRL 502

Query: 273 NGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLL 332
           +G V   I +  +L  + +SNN+L G +P   S++S L +LD+S N  SG+IP S+G L+
Sbjct: 503 HGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLV 562

Query: 333 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI-LRLRSN 391
           S+  LIL  N  SG +P SL  CS +  LDLG N+LSG IP+ +G+ + +L I L L SN
Sbjct: 563 SLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGD-IENLEIALNLSSN 621

Query: 392 YFNGTIPPELCKLPALHILDLSHNNLSGIIPP 423
              G IP ++  L  L ILDLSHN L G + P
Sbjct: 622 RLTGKIPSKIASLNKLSILDLSHNMLEGDLAP 653

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 170/520 (32%), Positives = 261/520 (50%), Gaps = 52/520 (10%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
           +E  N S L +LEL  NQL G +P+ LG L  L+ L ++ N    SIP S+  LT L  L
Sbjct: 258 AEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHL 317

Query: 71  YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISL 130
            LS N + G   E  G L ++EVL L  N + G   ++    ++NL+ L +      +++
Sbjct: 318 GLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQS----ITNLRNLTV------LTV 367

Query: 131 IFNISSHWIPPFKLTFINIRSCQL------GPKFPTWLRNQTELTTLVLNNVRISDTIPD 184
            FN  S  +P       N+R+         GP  P+ + N T L  L L++ +++  IP 
Sbjct: 368 GFNNISGELPADLGLLTNLRNLSAHDNLLTGP-IPSSISNCTGLKLLDLSHNQMTGEIPR 426

Query: 185 WFWQLDLTLDELDVAYNELSGSIPNSLGFRFP--ATVDLSSNSFEGPLPLWSFNVTKLYL 242
            F +++LT   + +  N  +G IP+ + F      T+ ++ N+  G L      + KL +
Sbjct: 427 GFGRMNLTF--ISIGRNHFTGEIPDDI-FNCSNLETLSVADNNLTGTLKPLIGKLQKLRI 483

Query: 243 RD---NSFSGPIPRDFGQKIPFLTDLDISF---NSLNGSVSKSICNLQQLLTLVISNNNL 296
                NS +GPIPR+ G     L DL+I +   N   G + + + NL  L  L + +N+L
Sbjct: 484 LQVSYNSLTGPIPREIGN----LKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDL 539

Query: 297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCS 356
            G IP    ++  L +LD+SNN  SG+IP     L S+ +L L  N  +G +P SLK+ S
Sbjct: 540 EGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLS 599

Query: 357 MMDSLDLGDNQLSGNIPAWIGESMPSLSI-LRLRSNYFNGTIPPELCKLPALHILDLSHN 415
           ++++ D+ DN L+G IP  +  S+ ++ + L   +N   GTIP EL KL  +  +DLS+N
Sbjct: 600 LLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNN 659

Query: 416 NLSGIIP----PCVGNFS------GMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL----- 460
             SG IP     C   F+       +    PD V     + + L  S   F   +     
Sbjct: 660 LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFG 719

Query: 461 ---YLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              +LV+L DLSSNNL+GE+P  L  L  L  L L+ N+L
Sbjct: 720 NMTHLVSL-DLSSNNLTGEIPESLANLSTLKHLKLASNNL 758

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  192 bits (489), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 165/526 (31%), Positives = 250/526 (47%), Gaps = 54/526 (10%)

Query: 17  SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQ 76
           S LE  +L  NQL G++P  LG L NL  L L  N   GSIP  IG LT + E+ +  N 
Sbjct: 142 SKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNL 201

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
           + G  P +FG L+ +  L L  N   G I  +   NL NL+EL L++     +L   I S
Sbjct: 202 LTGPIPSSFGNLTKLVNLYLFINSLSGSI-PSEIGNLPNLRELCLDRN----NLTGKIPS 256

Query: 137 HWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDEL 196
            +     +T +N+   QL  + P  + N T L TL L+  +++  IP     +  TL  L
Sbjct: 257 SFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIK-TLAVL 315

Query: 197 DVAYNELSGSIPNSLGFRFPATVDL--SSNSFEGPLPLWSFNVTK---LYLRDNSFSGPI 251
            +  N+L+GSIP  LG    + +DL  S N   GP+P     +T    L+LRDN  SGPI
Sbjct: 316 HLYLNQLNGSIPPELG-EMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPI 374

Query: 252 PRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLY 311
           P         LT L +  N+  G +  +IC   +L  L + +N+  G +P+   +  SL 
Sbjct: 375 PPGIANSTE-LTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLI 433

Query: 312 ILDMSNNSLSGEIPESIGSLLSVRFL------------------------ILCNNHISGE 347
            +    NS SG+I E+ G   ++ F+                        IL NN I+G 
Sbjct: 434 RVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGA 493

Query: 348 VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPAL 407
           +PP + N + +  LDL  N+++G +P  I  ++  +S L+L  N  +G IP  +  L  L
Sbjct: 494 IPPEIWNMTQLSQLDLSSNRITGELPESIS-NINRISKLQLNGNRLSGKIPSGIRLLTNL 552

Query: 408 HILDLSHNNLSGIIPPCVGNF----------SGMKVEPPDSVKYEGSLQVV------LKG 451
             LDLS N  S  IPP + N           + +    P+ +     LQ++      L G
Sbjct: 553 EYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDG 612

Query: 452 SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                + +L  +  +DLS NNLSG++P     ++ L  +++S N+L
Sbjct: 613 EISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNL 658

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 160/510 (31%), Positives = 254/510 (49%), Gaps = 39/510 (7%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
           S+  N SLLE ++L  N   G++P +LG L+NLR L L+ NS +G  P S+ ++  L+ +
Sbjct: 110 SQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETV 169

Query: 71  YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQS----- 125
           Y + N +NG  P N G +S +  L L +NQ+ G +  +   N++ L+EL LN  +     
Sbjct: 170 YFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSS-LGNITTLQELYLNDNNLVGTL 228

Query: 126 ---------------ENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTT 170
                           N SL+  I   ++   ++  I++ + Q     P  L N T L  
Sbjct: 229 PVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLRE 288

Query: 171 LVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVD--LSSNSFEG 228
               +  +S  IP  F QL   LD L +A N  SG IP  LG +  + +D  L  N  EG
Sbjct: 289 FGAFSCALSGPIPSCFGQLT-KLDTLYLAGNHFSGRIPPELG-KCKSMIDLQLQQNQLEG 346

Query: 229 PLPLWSFNVTK---LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQ 285
            +P     +++   L+L  N+ SG +P     KI  L  L +  N+L+G +   +  L+Q
Sbjct: 347 EIPGELGMLSQLQYLHLYTNNLSGEVPLSI-WKIQSLQSLQLYQNNLSGELPVDMTELKQ 405

Query: 286 LLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS 345
           L++L +  N+ +G IP+     SSL +LD++ N  +G IP ++ S   ++ L+L  N++ 
Sbjct: 406 LVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLE 465

Query: 346 GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLP 405
           G VP  L  CS ++ L L +N L G +P ++ +   +L    L  N F G IPP L  L 
Sbjct: 466 GSVPSDLGGCSTLERLILEENNLRGGLPDFVEKQ--NLLFFDLSGNNFTGPIPPSLGNLK 523

Query: 406 ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNL 465
            +  + LS N LSG IPP +G+   +K+E      +      +LKG      +  + ++ 
Sbjct: 524 NVTAIYLSSNQLSGSIPPELGSL--VKLE------HLNLSHNILKGILPSELSNCHKLSE 575

Query: 466 MDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
           +D S N L+G +P  L  L  L  L+L  N
Sbjct: 576 LDASHNLLNGSIPSTLGSLTELTKLSLGEN 605

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 164/522 (31%), Positives = 255/522 (48%), Gaps = 42/522 (8%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
           S   N S L  LEL  N+L G +P S+G LK LR L L  N+ +G IP S+GNL+ L  L
Sbjct: 176 SSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHL 235

Query: 71  YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISL 130
            L+ NQ+ G+ P + G L  + V+    N   G I  + F NL+ L    L+  +   + 
Sbjct: 236 VLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS-FANLTKLSIFVLSSNNFTSTF 294

Query: 131 IFNIS------------SHWIPPFKLTFINIRSCQ---------LGPKFPTWLRNQTELT 169
            F++S            + +  PF  + + I S +          GP       + T+L 
Sbjct: 295 PFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQ 354

Query: 170 TLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFP-ATVDLSSNSFEG 228
            L+L   R+   IP+   +L L L+ELD+++N  +G+IP ++        +DLS N+ EG
Sbjct: 355 DLILGRNRLHGPIPESISRL-LNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEG 413

Query: 229 PLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLT 288
            +P   + +  + L  NSFS     +  Q+   + +LD++ NS  G +   IC L  L  
Sbjct: 414 EVPACLWRLNTMVLSHNSFSS--FENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGF 471

Query: 289 LVISNNNLSGEIPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE 347
           L +SNN  SG IP    N S S+  L++ +N+ SG +P+       +  L + +N + G+
Sbjct: 472 LDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGK 531

Query: 348 VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKL--P 405
            P SL NC  ++ +++  N++    P+W+ ES+PSL +L LRSN F G +      +   
Sbjct: 532 FPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQ 590

Query: 406 ALHILDLSHNNLSGIIPP-CVGNFSGMK--VEPPDSV---------KYEGSLQVVLKGSE 453
           +L I+D+SHNN SG +PP    N+  M    E  D            Y   +++V KG +
Sbjct: 591 SLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVNKGVD 650

Query: 454 YVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
             F         +D S N ++G +P  L  L  L  LNLS N
Sbjct: 651 MSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGN 692

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 163/501 (32%), Positives = 247/501 (49%), Gaps = 50/501 (9%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
           G++ D +  L E TN      L L  N L G L SS+  L NL+   L+HN+  G +P  
Sbjct: 375 GQIPDSLFQLVELTN------LYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKE 428

Query: 61  IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
           IG L  L+ +YL  N+ +G+ P   G  + ++ +D   N+  G I  +  R    LK+L 
Sbjct: 429 IGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR----LKDLT 484

Query: 121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD 180
                EN  L+ NI +      ++T I++   QL    P+     T L   ++ N  +  
Sbjct: 485 RLHLREN-ELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQG 543

Query: 181 TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPL---WSFNV 237
            +PD    L   L  ++ + N+ +GSI    G     + D++ N FEG +PL    S N+
Sbjct: 544 NLPDSLINLK-NLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNL 602

Query: 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS 297
            +L L  N F+G IPR FG KI  L+ LDIS NSL+G +   +   ++L  + ++NN LS
Sbjct: 603 DRLRLGKNQFTGRIPRTFG-KISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM 357
           G IP     +  L  L +S+N   G +P  I SL ++  L L  N ++G +P  + N   
Sbjct: 662 GVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQA 721

Query: 358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALH-ILDLSHNN 416
           +++L+L +NQLSG +P+ IG+ +  L  LRL  N   G IP E+ +L  L   LDLS+NN
Sbjct: 722 LNALNLEENQLSGPLPSTIGK-LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNN 780

Query: 417 LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGE 476
            +G IP  +                                +TL  +  +DLS N L GE
Sbjct: 781 FTGRIPSTI--------------------------------STLPKLESLDLSHNQLVGE 808

Query: 477 MPVELTRLIHLGTLNLSRNHL 497
           +P ++  +  LG LNLS N+L
Sbjct: 809 VPGQIGDMKSLGYLNLSYNNL 829

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 237/490 (48%), Gaps = 66/490 (13%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
           +E  N S L       N LNG +P+ LG L+NL  L L +NS  G IP  +G ++ L+ L
Sbjct: 209 AELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYL 268

Query: 71  YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISL 130
            L +NQ+ G  P++   L  ++ LDLS N   G I E  F N+S L +L L     + SL
Sbjct: 269 SLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPE-EFWNMSQLLDLVLANNHLSGSL 327

Query: 131 IFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLD 190
             +I S                           N T L  LVL+  ++S  IP    +  
Sbjct: 328 PKSICS---------------------------NNTNLEQLVLSGTQLSGEIPVELSKCQ 360

Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
            +L +LD++ N L+GSIP +L              FE         +T LYL +N+  G 
Sbjct: 361 -SLKQLDLSNNSLAGSIPEAL--------------FE------LVELTDLYLHNNTLEGT 399

Query: 251 IPRDFGQKIPFLTDLD---ISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNI 307
           +       I  LT+L    +  N+L G + K I  L++L  L +  N  SGEIP+   N 
Sbjct: 400 L----SPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNC 455

Query: 308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ 367
           +SL ++DM  N   GEIP SIG L  +  L L  N + G +P SL NC  ++ LDL DNQ
Sbjct: 456 TSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQ 515

Query: 368 LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN 427
           LSG+IP+  G  +  L  L L +N   G +P  L  L  L  ++LSHN L+G I P  G+
Sbjct: 516 LSGSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGS 574

Query: 428 FSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHL 487
            S +  +  ++  +E  + + L  S+         ++ + L  N L+G++P  L ++  L
Sbjct: 575 SSYLSFDVTNN-GFEDEIPLELGNSQN--------LDRLRLGKNQLTGKIPWTLGKIREL 625

Query: 488 GTLNLSRNHL 497
             L++S N L
Sbjct: 626 SLLDMSSNAL 635

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 245/516 (47%), Gaps = 73/516 (14%)

Query: 12  ECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELY 71
           E  N   +  L L  N+L G +PSSLG LKNL  L L+ N   G IPP +GN+  + +L 
Sbjct: 265 EIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLE 324

Query: 72  LSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLI 131
           LS+N++ G  P + G L  + +L L EN   G+I      N+ ++ +L LN    N  L 
Sbjct: 325 LSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPP-ELGNMESMIDLQLN----NNKLT 379

Query: 132 FNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDL 191
            +I S +     LT++ +    L    P  L N   +  L L+  +++ ++PD F     
Sbjct: 380 GSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFT- 438

Query: 192 TLDELDVAYNELSGSIP-----------------NSLGFRFPATV---------DLSSNS 225
            L+ L +  N LSG+IP                 N  GF FP TV          L  N 
Sbjct: 439 KLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGF-FPETVCKGRKLQNISLDYNH 497

Query: 226 FEGPLPLWSFNVTKLYLR----DNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSIC 281
            EGP+P  S    K  +R     N F+G I   FG   P L  +D S N  +G +S +  
Sbjct: 498 LEGPIP-KSLRDCKSLIRARFLGNKFTGDIFEAFGI-YPDLNFIDFSHNKFHGEISSNWE 555

Query: 282 NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN 341
              +L  L++SNNN++G IP    N++ L  LD+S N+L GE+PE+IG+L ++  L L  
Sbjct: 556 KSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNG 615

Query: 342 NHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL 401
           N +SG VP  L   + ++SLDL  N  S  IP    +S   L  + L  N F+G+I P L
Sbjct: 616 NQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTF-DSFLKLHDMNLSRNKFDGSI-PRL 673

Query: 402 CKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLY 461
            KL  L  LDLSHN L G IP  +                  SLQ + K           
Sbjct: 674 SKLTQLTQLDLSHNQLDGEIPSQL-----------------SSLQSLDK----------- 705

Query: 462 LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
               +DLS NNLSG +P     +I L  +++S N L
Sbjct: 706 ----LDLSHNNLSGLIPTTFEGMIALTNVDISNNKL 737

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
359488583	958	PREDICTED: LRR receptor-like serine/thre	0.997	0.517	0.667	0.0
147789266	925	hypothetical protein VITISV_040339 [Viti	0.997	0.536	0.661	0.0
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.997	0.501	0.661	0.0
359496390	1113	PREDICTED: LRR receptor-like serine/thre	0.993	0.443	0.638	1e-176
359488641	1012	PREDICTED: LRR receptor-like serine/thre	0.997	0.490	0.632	1e-175
359488639	1097	PREDICTED: LRR receptor-like serine/thre	0.993	0.450	0.634	1e-175
359496388	1014	PREDICTED: brassinosteroid LRR receptor	0.993	0.487	0.628	1e-173
225451409	1007	PREDICTED: leucine-rich repeat receptor	0.993	0.490	0.632	1e-173
359496717	1014	PREDICTED: brassinosteroid LRR receptor	0.993	0.487	0.624	1e-172
359496701	904	PREDICTED: LRR receptor-like serine/thre	0.993	0.546	0.614	1e-170

>gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/499 (66%), Positives = 413/499 (82%), Gaps = 3/499 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
           GE+++F+DGLS C+ S+L E L+LGFN+L G+LP SLG+LKNLRYL+LW NSF GSIP S
Sbjct: 296 GEIAEFLDGLSACSYSTL-ENLDLGFNKLTGNLPDSLGHLKNLRYLQLWSNSFRGSIPES 354

Query: 61  IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
           IG+L+ L+ELYLS NQM G  P++ GQLS++ VL+L+EN WEG+ITE HF NLS+LK+L+
Sbjct: 355 IGSLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNENSWEGVITEAHFANLSSLKQLS 414

Query: 121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD 180
           + K S N+SL+FNISS W PPFKLT+IN+RSCQLGPKFPTWLR Q ELTT+VLNN  IS 
Sbjct: 415 ITKSSPNVSLVFNISSDWAPPFKLTYINLRSCQLGPKFPTWLRTQNELTTIVLNNAGISG 474

Query: 181 TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKL 240
           TIPDW W+LDL L ELD+AYN+LSG +PNSL F + A VDLSSN F+GPLPLWS NV+ L
Sbjct: 475 TIPDWLWKLDLQLSELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDGPLPLWSSNVSTL 534

Query: 241 YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEI 300
           YLR N FSGPIP++ GQ +P LTDLDIS+NSLNGS+  S+ +LQ L+TLVISNNNLSGEI
Sbjct: 535 YLRGNLFSGPIPQNIGQVMPILTDLDISWNSLNGSIPLSMGDLQALITLVISNNNLSGEI 594

Query: 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDS 360
           P+ W+ + SLYI+DMSNNSLSG IP S+GSL ++RFL+L NN++SGE+P  L+NCS+++S
Sbjct: 595 PQFWNKMPSLYIVDMSNNSLSGTIPRSLGSLTALRFLVLSNNNLSGELPSQLQNCSVLES 654

Query: 361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
           LDLGDN+ SGNIP+WIGESMPSL IL L+SN+F+G IP E+C L ALHILDLSHN++SG 
Sbjct: 655 LDLGDNKFSGNIPSWIGESMPSLLILALQSNFFSGNIPSEICALSALHILDLSHNHVSGF 714

Query: 421 IPPCVGNFSGMKVEPPDS--VKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP 478
           IPPC GN SG K E  D    +YEG L++V KG    +Y+TLYLVN +DLS+N+LSGE+P
Sbjct: 715 IPPCFGNLSGFKSELSDDDLERYEGRLKLVAKGRALEYYSTLYLVNSLDLSNNSLSGEIP 774

Query: 479 VELTRLIHLGTLNLSRNHL 497
           +ELT L+ LGTLNLS N+L
Sbjct: 775 IELTSLLKLGTLNLSSNNL 793

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789266|emb|CAN71149.1| hypothetical protein VITISV_040339 [Vitis vinifera]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/499 (66%), Positives = 408/499 (81%), Gaps = 3/499 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
           GE+++F+DGLS C+ S+L E L+LGFN+L G+LP SLG+LKNLRYL+L  NSF GSIP S
Sbjct: 264 GEITEFLDGLSACSYSTL-ENLDLGFNELTGNLPDSLGHLKNLRYLQLRSNSFSGSIPES 322

Query: 61  IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
           IG L+ L+ELYLS NQM G  P++ GQLS++ VL+L+ N WEG+ITE HF NLS+L +L+
Sbjct: 323 IGXLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNGNSWEGVITEAHFANLSSLXQLS 382

Query: 121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD 180
           + + S N+SL+FN+SS W PPFKLT+IN+RSCQLGPKFPTWLR+Q ELTT+VLNN RIS 
Sbjct: 383 ITRSSPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPKFPTWLRSQNELTTVVLNNARISG 442

Query: 181 TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKL 240
           TIPDW W+LDL L ELD+AYN+LSG +PNSL F + A VDLSSN F+GPLPLWS NV+ L
Sbjct: 443 TIPDWLWKLDLQLRELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDGPLPLWSSNVSTL 502

Query: 241 YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEI 300
           YLRDN FSGPIP++  Q +P LTDLDIS NSLNGS+  S+ NLQ L+TLVISNNNLSGEI
Sbjct: 503 YLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPLSMGNLQALITLVISNNNLSGEI 562

Query: 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDS 360
           P+ W+ + SLYI+DMSNNSLSG IP+S+GSL ++RFL+L +N++SGE+P  L+NCS ++S
Sbjct: 563 PQFWNKMPSLYIVDMSNNSLSGTIPKSLGSLTALRFLVLSDNNLSGELPSQLQNCSALES 622

Query: 361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
           LDLGDN+ SGNIP+WIGESM SL IL LRSN+F+G IP E+C L ALHILDLSHNN+SG 
Sbjct: 623 LDLGDNKFSGNIPSWIGESMSSLLILALRSNFFSGKIPSEICALSALHILDLSHNNVSGF 682

Query: 421 IPPCVGNFSGMKVEPPDS--VKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP 478
           IPPC GN SG K E  D    +YEGSL++V KG    +Y  LYLVN +DLS+N+LSGE+P
Sbjct: 683 IPPCFGNLSGFKSELSDDDLARYEGSLKLVAKGRALEYYDILYLVNSLDLSNNSLSGEIP 742

Query: 479 VELTRLIHLGTLNLSRNHL 497
           +ELT L+ LGTLNLS N+L
Sbjct: 743 IELTSLLKLGTLNLSSNNL 761

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/499 (66%), Positives = 408/499 (81%), Gaps = 3/499 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
           GE+++F+DGLS C+ S+L E L+LGFN+L G+LP SLG+LKNLRYL+L  NSF GSIP S
Sbjct: 329 GEITEFLDGLSACSYSTL-ENLDLGFNELTGNLPDSLGHLKNLRYLQLRSNSFSGSIPES 387

Query: 61  IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
           IG L+ L+ELYLS NQM G  P++ GQLS++ VL+L+ N WEG+ITE HF NLS+LK+L+
Sbjct: 388 IGRLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNGNSWEGVITEAHFANLSSLKQLS 447

Query: 121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD 180
           + + S N+SL+FN+SS W PPFKLT+IN+RSCQLGPKFPTWLR+Q ELTT+VLNN RIS 
Sbjct: 448 ITRSSPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPKFPTWLRSQNELTTVVLNNARISG 507

Query: 181 TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKL 240
           TIPDW W+L+L L ELD+AYN+LSG +PNSL F + A VDLSSN F+GPLPLWS NV+ L
Sbjct: 508 TIPDWLWKLNLQLRELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDGPLPLWSSNVSTL 567

Query: 241 YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEI 300
           YLRDN FSGPIP++  Q +P LTDLDIS NSLNGS+  S+ NLQ L+TLVISNNNLSGEI
Sbjct: 568 YLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPWSMGNLQALITLVISNNNLSGEI 627

Query: 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDS 360
           P+ W+ + SLYI+DMSNNSLSG IP S+GSL ++RFL+L +N++SGE+P  L+NCS ++S
Sbjct: 628 PQFWNKMPSLYIIDMSNNSLSGTIPRSLGSLTALRFLVLSDNNLSGELPSQLQNCSALES 687

Query: 361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
           LDLGDN+ SGNIP+WIGESM SL IL LRSN+F+G IP E+C L ALHILDLSHNN+SG 
Sbjct: 688 LDLGDNKFSGNIPSWIGESMSSLLILALRSNFFSGKIPSEICALSALHILDLSHNNVSGF 747

Query: 421 IPPCVGNFSGMKVEPPDS--VKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP 478
           IPPC GN SG K E  D    +YEGSL++V KG    +Y  LYLVN +DLS+N+LSGE+P
Sbjct: 748 IPPCFGNLSGFKSELSDDDLARYEGSLKLVAKGRALEYYDILYLVNSLDLSNNSLSGEIP 807

Query: 479 VELTRLIHLGTLNLSRNHL 497
           +ELT L+ LGTLNLS N+L
Sbjct: 808 IELTSLLKLGTLNLSSNNL 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496390|ref|XP_002268557.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/498 (63%), Positives = 393/498 (78%), Gaps = 4/498 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFN-QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP 59
           GE++ F+DGLSEC N S LE L+LGFN +L G LP +LG+LKNL++L LW NSFVGSIP 
Sbjct: 448 GEITGFMDGLSECVNGSSLESLDLGFNDKLGGFLPDALGHLKNLKFLRLWSNSFVGSIPN 507

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           SIGNL+ LKE Y+S NQMNG  PE+ GQLSA+  +DLSEN W G+ITE+HF NL+NL EL
Sbjct: 508 SIGNLSSLKEFYISENQMNGIIPESVGQLSALVAVDLSENPWVGVITESHFSNLTNLTEL 567

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           A+ K S N++L FN+SS WIPPFKL ++ +R+CQLGPKFP WLRNQ +L TLVLNN RIS
Sbjct: 568 AIKKVSPNVTLAFNVSSKWIPPFKLNYLELRTCQLGPKFPAWLRNQNQLKTLVLNNARIS 627

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
           DTIPDWFW+LDL L+ LDVA N+LSG +PNSL F   A VDLSSN F GP+P +S N++ 
Sbjct: 628 DTIPDWFWKLDLQLNLLDVANNQLSGRVPNSLKFPKNAVVDLSSNRFHGPIPHFSSNLSS 687

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           LYLRDN FSGPIP D G+ +P+LT+ D+S+NSLNG++  SI  +  L +LV+SNN+LSGE
Sbjct: 688 LYLRDNLFSGPIPLDVGKTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGE 747

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           IP +W++   LYI+DM+NNSLSGEIP S+G+L S+ FLIL  N +SGE+P SL+NC +MD
Sbjct: 748 IPLIWNDKPDLYIVDMANNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKIMD 807

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           S DLGDN+LSGN+P+WIGE M SL ILRLRSN+F+G IP ++C L  LHILDL+H+NLSG
Sbjct: 808 SFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNFFDGNIPSQVCSLSHLHILDLAHDNLSG 866

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            IP C+GN SGM  E   S +YEG L VV+KG E ++  TLYLVN +DLS NNLSG++P 
Sbjct: 867 FIPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNLSGKLP- 924

Query: 480 ELTRLIHLGTLNLSRNHL 497
           EL  L  LGTLNLS NHL
Sbjct: 925 ELRNLSRLGTLNLSINHL 942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488641|ref|XP_003633796.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 315/498 (63%), Positives = 385/498 (77%), Gaps = 2/498 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQ-LNGDLPSSLGYLKNLRYLELWHNSFVGSIPP 59
           GE++ F+DGLSEC N S LE L+ GFN  L G LP +LG+LKNL+ L LW NSFVGSIP 
Sbjct: 344 GEITGFMDGLSECVNGSSLESLDSGFNDNLGGFLPDALGHLKNLKSLRLWSNSFVGSIPN 403

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           SIGNL+ LKE Y+S NQMNG  PE+ GQLSA+  +DLSEN W G+ITE+HF NL+NL EL
Sbjct: 404 SIGNLSSLKEFYISENQMNGIIPESVGQLSALVAVDLSENPWVGVITESHFSNLTNLTEL 463

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           A+ K S N++L FN+SS WIPPFKL ++ +R+CQLGPKFP WLRNQ +L TLVLNN RIS
Sbjct: 464 AIKKVSPNVTLAFNVSSKWIPPFKLNYLELRTCQLGPKFPAWLRNQNQLKTLVLNNARIS 523

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
           DTIPDWFW+LDL +D LD A N+LSG +PNSL F+  A VDLSSN F GP P +S  +  
Sbjct: 524 DTIPDWFWKLDLQVDLLDFANNQLSGRVPNSLKFQEQAIVDLSSNRFHGPFPHFSSKLNS 583

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           LYLRDNSFSGP+PRD G+ +P+L + D+S+NSLNG++  S   L  LLTLVISNN+LSG 
Sbjct: 584 LYLRDNSFSGPMPRDVGKTMPWLINFDVSWNSLNGTIPLSFGKLTNLLTLVISNNHLSGG 643

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           IP  W+ +  LY+LDM+NN+LSGE+P S+GSL  VRFL++ NNH+SGE+P +L+NC+ + 
Sbjct: 644 IPEFWNGLPDLYVLDMNNNNLSGELPSSMGSLRFVRFLMISNNHLSGEIPSALQNCTAIR 703

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           +LDLG N+ SGN+PAWIGE MP+L ILRLRSN F+G+IP +LC L ALHILDL  NNLSG
Sbjct: 704 TLDLGGNRFSGNVPAWIGERMPNLLILRLRSNLFHGSIPSQLCTLSALHILDLGENNLSG 763

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            IP CVGN SGM V   DS +YE  L V  KG E ++ + LYLVN MDLS+NNLSGE+P 
Sbjct: 764 FIPSCVGNLSGM-VSEIDSQRYEAELMVWRKGREDLYKSILYLVNSMDLSNNNLSGEVPE 822

Query: 480 ELTRLIHLGTLNLSRNHL 497
            +T L  LGTLNLS NHL
Sbjct: 823 GVTNLSRLGTLNLSINHL 840

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488639|ref|XP_003633795.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 316/498 (63%), Positives = 389/498 (78%), Gaps = 4/498 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQ-LNGDLPSSLGYLKNLRYLELWHNSFVGSIPP 59
           GE++ F+DGLSEC N S LE L+LGFN  L G LP +LG+LKNL+ L LW NSFVGSIP 
Sbjct: 432 GEITGFMDGLSECVNGSSLESLDLGFNDNLGGFLPDALGHLKNLKSLRLWSNSFVGSIPN 491

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           SIGNL+ LKE Y+S NQMNG  PE+ GQLSA+  +D+SEN W G+ITE+HF NL+NL EL
Sbjct: 492 SIGNLSSLKEFYISENQMNGIIPESVGQLSALVAVDVSENPWVGVITESHFSNLTNLTEL 551

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           A+ K S N++L FN+SS WIPPFKL ++ +R CQLGPKFP WLRNQ +L TLVLNN RIS
Sbjct: 552 AIKKVSPNVTLAFNVSSKWIPPFKLNYLELRICQLGPKFPAWLRNQNQLKTLVLNNARIS 611

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
           DTIPDWFW+LDL +D LD A N+LSG +PNSL F+  A VDLSSN F GP P +S  ++ 
Sbjct: 612 DTIPDWFWKLDLQVDLLDFANNQLSGRVPNSLKFQEQAIVDLSSNRFHGPFPHFSSKLSS 671

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           LYLRDNSFSGP+PRD G+ +P+L + D+S+NSLNG++  SI  +  L +LV+SNNNLSGE
Sbjct: 672 LYLRDNSFSGPMPRDVGKTMPWLINFDVSWNSLNGTIPLSIGKITGLASLVLSNNNLSGE 731

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           IP +W++   LYI+DM+NNSLSGEIP S+G+L S+ FLIL  N +SGE+P SL+NC +MD
Sbjct: 732 IPLIWNDKPDLYIVDMANNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKIMD 791

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           S DLGDN+LSGN+P+WIGE M SL ILRLRSN+F+G IP ++C L  LHILDL+H+NLSG
Sbjct: 792 SFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNFFDGNIPSQVCSLSHLHILDLAHDNLSG 850

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            IP C+GN SGM  E   S +YEG L VV+KG E ++  TLYLVN +DLS NNLSG++P 
Sbjct: 851 FIPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNLSGKLP- 908

Query: 480 ELTRLIHLGTLNLSRNHL 497
           EL  L  LGTLNLS NHL
Sbjct: 909 ELRNLSRLGTLNLSINHL 926

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496388|ref|XP_003635224.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 313/498 (62%), Positives = 392/498 (78%), Gaps = 4/498 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFN-QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP 59
           GE+++F+DGLSEC NSS LE L+LGFN +L G LP+SLG+LKNL+ L LW NSFVGSIP 
Sbjct: 343 GEITEFMDGLSECVNSSSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPN 402

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           SIGNL+ L+  Y+S NQMNG  PE+ GQLSA+  LDLSEN W G++TE+HF NL++L EL
Sbjct: 403 SIGNLSSLQGFYISENQMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTEL 462

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           A+ K S NI+L+FN++S WIPPFKL ++ +++CQLGPKFP WLR Q +L T+VLNN RIS
Sbjct: 463 AIKKSSPNITLVFNVNSKWIPPFKLNYLELQACQLGPKFPAWLRTQNQLKTIVLNNARIS 522

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
           DTIPDWFW+LDL L+ LDVA N+LSG +PNSL F   A VDL SN F GP P +S N++ 
Sbjct: 523 DTIPDWFWKLDLQLELLDVANNQLSGRVPNSLKFPKNAVVDLGSNRFHGPFPHFSSNLSS 582

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           LYLRDN FSGPIPRD G+ +P+LT+ D+S+NSLNG++  S+  +  L +LV+SNN+LSGE
Sbjct: 583 LYLRDNLFSGPIPRDVGKTMPWLTNFDVSWNSLNGTIPLSLGKITGLTSLVLSNNHLSGE 642

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           IP +W++   LYI+DM+NNSLSGEIP S+G+L S+ FLIL  N +SGE+P SL+NC  MD
Sbjct: 643 IPLIWNDKPDLYIVDMANNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMD 702

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           S DLGDN+LSGN+P+WIGE M SL ILRLRSN F+G IP ++C L  LHILDL+HNNLSG
Sbjct: 703 SFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSG 761

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            +P C+GN SGM  E   S +YEG L VV+KG E ++  TLYLVN +DLS NN+SG++P 
Sbjct: 762 SVPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKLP- 819

Query: 480 ELTRLIHLGTLNLSRNHL 497
           EL  L  LGTLNLSRNHL
Sbjct: 820 ELRNLSRLGTLNLSRNHL 837

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451409|ref|XP_002273126.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/498 (63%), Positives = 391/498 (78%), Gaps = 4/498 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFN-QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP 59
           GE+++F+DGLSEC NSS LE L+LGFN +L G LP+SLG+LKNL+ L LW NSFVGSIP 
Sbjct: 344 GEITEFMDGLSECVNSSSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPN 403

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           SIGNL+ L+  Y+S NQMNG  PE+ GQLSA+  LDLSEN W G++TE+HF NL++L EL
Sbjct: 404 SIGNLSSLQGFYISENQMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTEL 463

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           A+ K S NI+L+FN++S WIPPFKL ++ +R+CQLGPKFP WLR Q +L T+VLNN RIS
Sbjct: 464 AIKKSSPNITLVFNVNSKWIPPFKLNYLELRTCQLGPKFPAWLRTQNQLKTIVLNNARIS 523

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
           DTIPDWFW+LDL L+ LDVA N+LSG +PNSL F   A VDLSSN F GP P +S N++ 
Sbjct: 524 DTIPDWFWKLDLQLELLDVANNQLSGRVPNSLKFPENAVVDLSSNRFHGPFPHFSSNLSS 583

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           LYLRDN FSGPIPRD G+ +P+LT+ D+S+NSLNG++  SI  +  L +LV+SNN+LSGE
Sbjct: 584 LYLRDNLFSGPIPRDVGKTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGE 643

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           IP +W++   LYI+DM NNSLSGEIP S+G+L S+ FLIL  N +SGE+P SL+NC  MD
Sbjct: 644 IPLIWNDKPDLYIVDMENNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMD 703

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           S DLGDN+LSGN+P+WIGE M SL ILRLRSN F+G IP ++C L  LHILDL+HNNLSG
Sbjct: 704 SFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSG 762

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            +P C+GN SGM  E   S +YEG L VV+KG E ++  TLYLVN +DLS NN+SG++P 
Sbjct: 763 SVPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKLP- 820

Query: 480 ELTRLIHLGTLNLSRNHL 497
           EL  L  LGTLNLS NHL
Sbjct: 821 ELRNLSRLGTLNLSINHL 838

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/498 (62%), Positives = 391/498 (78%), Gaps = 4/498 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFN-QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP 59
           GE+++F+DGLSEC NSS LE L+LGFN +L G LP+SLG+LKNL+ L LW NSFVGSIP 
Sbjct: 343 GEITEFMDGLSECVNSSSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPN 402

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           SIGNL+ L+  Y+S NQMNG  PE+ GQLSA+  LDLSEN W G++TE+HF NL++L EL
Sbjct: 403 SIGNLSSLQGFYISENQMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTEL 462

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           A+ K   NI+L+FN++S WIPPFKL ++ +++CQLGPKFP WLR Q +L T+VLNN RIS
Sbjct: 463 AIKKSFLNITLVFNVNSKWIPPFKLNYLELQACQLGPKFPAWLRTQNQLKTIVLNNARIS 522

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
           DTIPDWFW+LDL L+ LDVA N+LSG +PNSL F   A VDL SN F GP P +S N++ 
Sbjct: 523 DTIPDWFWKLDLQLELLDVANNQLSGRVPNSLKFPKNAVVDLGSNRFHGPFPHFSSNLSS 582

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           LYLRDN FSGPIPRD G+ +P+LT+ D+S+NSLNG++  S+  +  L +LV+SNN+LSGE
Sbjct: 583 LYLRDNLFSGPIPRDVGKTMPWLTNFDVSWNSLNGTIPLSLGKITGLTSLVLSNNHLSGE 642

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           IP +W++   LYI+DM+NNSLSGEIP S+G+L S+ FLIL  N +SGE+P SL+NC  MD
Sbjct: 643 IPLIWNDKPDLYIVDMANNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMD 702

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           S DLGDN+LSGN+P+WIGE M SL ILRLRSN F+G IP ++C L  LHILD++HNNLSG
Sbjct: 703 SFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDVAHNNLSG 761

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            +P C+GN SGM  E   S +YEG L VV+KG E ++  TLYLVN +DLS NN+SG++P 
Sbjct: 762 SVPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKLP- 819

Query: 480 ELTRLIHLGTLNLSRNHL 497
           EL  L  LGTLNLSRNHL
Sbjct: 820 ELRNLSRLGTLNLSRNHL 837

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496701|ref|XP_003635305.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like, partial [Vitis vinifera]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/498 (61%), Positives = 388/498 (77%), Gaps = 4/498 (0%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFN-QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP 59
           GE+++ IDGLSEC NSS LE L+LGFN +L+G LP+SLG+LKNL+ L LW NSFVGSIP 
Sbjct: 237 GEITELIDGLSECVNSSSLESLDLGFNYKLDGFLPNSLGHLKNLKSLHLWGNSFVGSIPN 296

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           +IGNL+ L+E Y+S NQMNG  PE+ GQLSA+   DLSEN W  ++TE+HF NL++L EL
Sbjct: 297 TIGNLSSLQEFYISENQMNGIIPESVGQLSALVAADLSENPWVCVVTESHFSNLTSLIEL 356

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           ++ K S NI+L+FN++S WIPPFKL+++ +++C LGPKFP WLR Q +L T+VLNN RIS
Sbjct: 357 SIKKSSPNITLVFNVNSKWIPPFKLSYLELQACHLGPKFPAWLRTQNQLKTVVLNNARIS 416

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
           D+IPDWFW+LDL L+ LD + N+LSG +PNSL F   A VDLSSN F GP P +S N++ 
Sbjct: 417 DSIPDWFWKLDLQLELLDFSNNQLSGKVPNSLKFTENAVVDLSSNRFHGPFPHFSSNLSS 476

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           LYLRDNSFSGPIPRDFG+ +P L++ D+S+NSLNG++  S+  +  L  LVISNN LSGE
Sbjct: 477 LYLRDNSFSGPIPRDFGKTMPRLSNFDVSWNSLNGTIPLSMAKITGLTNLVISNNQLSGE 536

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           IP +W++   LY +DM+NNSLSGEIP S+G+L S+ FLIL  N +SGE+P SL+NC  MD
Sbjct: 537 IPLIWNDKPDLYEVDMANNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPFSLQNCKDMD 596

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           S DLGDN+LSGN+P WIGE M SL ILRLRSN+F+G IP ++C L  LHILDL+HNNLSG
Sbjct: 597 SFDLGDNRLSGNLPTWIGE-MQSLLILRLRSNFFDGNIPSQVCNLSHLHILDLAHNNLSG 655

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            +P C+GN SGM  E  D  +YEG L VV+KG E ++ +TLYLVN +DLS NNLSG++P 
Sbjct: 656 SVPSCLGNLSGMATEISDE-RYEGRLSVVVKGRELIYQSTLYLVNSIDLSDNNLSGKLP- 713

Query: 480 ELTRLIHLGTLNLSRNHL 497
           E+  L  LGTLNLS NH 
Sbjct: 714 EIRNLSRLGTLNLSINHF 731

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.979	0.538	0.425	4.1e-104
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.949	0.415	0.343	6.5e-57
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.957	0.561	0.331	6.5e-55
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.945	0.412	0.324	6.8e-54
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.955	0.431	0.328	5.6e-53
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.818	0.501	0.357	1.3e-52
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.941	0.447	0.323	2.1e-52
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.812	0.444	0.328	3.5e-52
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.786	0.342	0.384	3.6e-52
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.837	0.377	0.366	8.6e-52

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 212/498 (42%), Positives = 314/498 (63%)

Query:     1 GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
             G++  F+D  S    +SL+  L+L  N+L G LP SLG L+NL+ L+L  NSF GS+P S
Sbjct:   334 GQIHGFLDAFSRNKGNSLVF-LDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFTGSVPSS 392

Query:    61 IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
             IGN+  LK+L LS+N MNG   E+ GQL+ +  L+L  N W G++ ++HF NL +LK + 
Sbjct:   393 IGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSIR 452

Query:   121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD 180
             L  +    SL+F + S WIPPF+L  I I +C++G  FP WL+ QT+L  + L N  I D
Sbjct:   453 LTTEPYR-SLVFKLPSTWIPPFRLELIQIENCRIG-LFPMWLQVQTKLNFVTLRNTGIED 510

Query:   181 TIPD-WFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
             TIPD WF  +   +  L +A N + G +P  L F    T+DLSSN+FEG  PLWS N T+
Sbjct:   511 TIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWSTNATE 570

Query:   240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
             L L +N+FSG +P++    +P +  + +  NS  G++  S+C +  L  L +  N+ SG 
Sbjct:   571 LRLYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGS 630

Query:   300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
              P+ W     L+ +D+S N+LSGEIPES+G L S+  L+L  N + G++P SL+NCS + 
Sbjct:   631 FPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLT 690

Query:   360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
             ++DLG N+L+G +P+W+G+ + SL +LRL+SN F G IP +LC +P L ILDLS N +SG
Sbjct:   691 NIDLGGNKLTGKLPSWVGK-LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISG 749

Query:   420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
              IP C+ N + +     + V ++  + +V +  EY       + N ++LS NN+SGE+P 
Sbjct:   750 PIPKCISNLTAIARGTNNEV-FQNLVFIVTRAREYEA-----IANSINLSGNNISGEIPR 803

Query:   480 ELTRLIHLGTLNLSRNHL 497
             E+  L++L  LNLSRN +
Sbjct:   804 EILGLLYLRILNLSRNSM 821

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.5e-57, P = 6.5e-57
 Identities = 169/492 (34%), Positives = 249/492 (50%)

Query:    11 SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
             S   N + L+ L L +NQL G++P+SLG L++L+YL L  N   G++P +I N + L  L
Sbjct:   180 SGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHL 239

Query:    71 YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS-NLKELALNKQSENIS 129
               S N++ G  P  +G L  +EVL LS N + G +  + F N S  + +L  N  S+ + 
Sbjct:   240 SASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVR 299

Query:   130 LIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQL 189
                  +        L  ++++  ++  +FP WL N   L  L ++    S  IP     L
Sbjct:   300 PETTANCRT----GLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNL 355

Query:   190 DLTLDELDVAYNELSGSIPNSLGFRFPATV-DLSSNSFEGPLP--LWSFNVTK-LYLRDN 245
                L+EL +A N L+G IP  +       V D   NS +G +P  L      K L L  N
Sbjct:   356 K-RLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRN 414

Query:   246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS 305
             SFSG +P      +  L  L++  N+LNGS    +  L  L  L +S N  SG +P   S
Sbjct:   415 SFSGYVPSSM-VNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSIS 473

Query:   306 NISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365
             N+S+L  L++S N  SGEIP S+G+L  +  L L   ++SGEVP  L     +  + L  
Sbjct:   474 NLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQG 533

Query:   366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV 425
             N  SG +P     S+ SL  + L SN F+G IP     L  L  L LS N++SG IPP +
Sbjct:   534 NNFSGVVPEGFS-SLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEI 592

Query:   426 GNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLI 485
             GN S ++V    S +  G +   L        + L  + ++DL  NNLSGE+P E+++  
Sbjct:   593 GNCSALEVLELRSNRLMGHIPADL--------SRLPRLKVLDLGQNNLSGEIPPEISQSS 644

Query:   486 HLGTLNLSRNHL 497
              L +L+L  NHL
Sbjct:   645 SLNSLSLDHNHL 656

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 6.5e-55, P = 6.5e-55
 Identities = 171/516 (33%), Positives = 258/516 (50%)

Query:     1 GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
             G++ D I  L +  N      L L  N L G++PSSLG L NL +L L HN  VG +P S
Sbjct:   196 GKIPDSIGDLKQLRN------LSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPAS 249

Query:    61 IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
             IGNL  L+ +   +N ++G  P +F  L+ + +  LS N +    T T   ++S    L 
Sbjct:   250 IGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNF----TSTFPFDMSIFHNLE 305

Query:   121 LNKQSEN-ISLIFNISSHWIPPFKLTFINIRSCQL-GP-KFPTWLRNQTELTTLVLNNVR 177
                 S N  S  F  S   IP   L  I ++  Q  GP +F     + T+L  L+L   R
Sbjct:   306 YFDVSYNSFSGPFPKSLLLIP--SLESIYLQENQFTGPIEFAN-TSSSTKLQDLILGRNR 362

Query:   178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPAT-VDLSSNSFEGPLP--LWS 234
             +   IP+   +L L L+ELD+++N  +G+IP ++        +DLS N+ EG +P  LW 
Sbjct:   363 LHGPIPESISRL-LNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWR 421

Query:   235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294
              N   + L  NSFS     +  Q+   + +LD++ NS  G +   IC L  L  L +SNN
Sbjct:   422 LNT--MVLSHNSFSSF--ENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNN 477

Query:   295 NLSGEIPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLK 353
               SG IP    N S S+  L++ +N+ SG +P+       +  L + +N + G+ P SL 
Sbjct:   478 LFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLI 537

Query:   354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKL--PALHILD 411
             NC  ++ +++  N++    P+W+ ES+PSL +L LRSN F G +      +   +L I+D
Sbjct:   538 NCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIID 596

Query:   412 LSHNNLSGIIPPCV-GNFSGMKV--EPPDSV-----KYEGS----LQVVLKGSEYVFYTT 459
             +SHNN SG +PP    N+  M    E  D       +Y  S    +++V KG +  F   
Sbjct:   597 ISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERI 656

Query:   460 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
                   +D S N ++G +P  L  L  L  LNLS N
Sbjct:   657 RRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGN 692

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.8e-54, P = 6.8e-54
 Identities = 158/487 (32%), Positives = 247/487 (50%)

Query:    17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQ 76
             S L+ + L FN  +G++P++LG L++L YL L  N   G+IP ++ N + L    ++ N 
Sbjct:   187 SSLQLINLSFNHFSGEIPATLGQLQDLEYLWLDSNQLQGTIPSALANCSSLIHFSVTGNH 246

Query:    77 MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS--NLKELALNKQSENISLIFNI 134
             + G  P   G + +++V+ LSEN + G +  +     S  N     +     N + I   
Sbjct:   247 LTGLIPVTLGTIRSLQVISLSENSFTGTVPVSLLCGYSGYNSSMRIIQLGVNNFTGIAKP 306

Query:   135 SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLD 194
             S+       L  ++I   ++   FP WL + T L  L ++    S  +      L + L 
Sbjct:   307 SNAACVNPNLEILDIHENRINGDFPAWLTDLTSLVVLDISGNGFSGGVTAKVGNL-MALQ 365

Query:   195 ELDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGPLP--LWSF-NVTKLYLRDNSFSGP 250
             EL VA N L G IP S+   +    VD   N F G +P  L    ++T + L  N FSG 
Sbjct:   366 ELRVANNSLVGEIPTSIRNCKSLRVVDFEGNKFSGQIPGFLSQLRSLTTISLGRNGFSGR 425

Query:   251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
             IP D    +  L  L+++ N L G++   I  L  L  L +S N  SGE+P    ++ SL
Sbjct:   426 IPSDL-LSLYGLETLNLNENHLTGAIPSEITKLANLTILNLSFNRFSGEVPSNVGDLKSL 484

Query:   311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
              +L++S   L+G IP SI  L+ ++ L +    ISG++P  L     +  + LG+N L G
Sbjct:   485 SVLNISGCGLTGRIPVSISGLMKLQVLDISKQRISGQLPVELFGLPDLQVVALGNNLLGG 544

Query:   371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSG 430
              +P     S+ SL  L L SN F+G IP     L +L +L LSHN +SG IPP +GN S 
Sbjct:   545 VVPEGFS-SLVSLKYLNLSSNLFSGHIPKNYGFLKSLQVLSLSHNRISGTIPPEIGNCSS 603

Query:   431 MKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL 490
             ++V     ++  GS    LKG   V+ + L L+  +DLS N+L+G +P ++++   L +L
Sbjct:   604 LEV-----LEL-GSNS--LKGHIPVYVSKLSLLKKLDLSHNSLTGSIPDQISKDSSLESL 655

Query:   491 NLSRNHL 497
              L+ N L
Sbjct:   656 LLNSNSL 662

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.6e-53, P = 5.6e-53
 Identities = 165/503 (32%), Positives = 256/503 (50%)

Query:     4 SDFIDG-----LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIP 58
             ++FI G     LS C +   LE L+L  N+ +G +P  L  +  L+ L L  N   GSIP
Sbjct:   100 TNFISGPIPQDLSLCRS---LEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIP 156

Query:    59 PSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE 118
               IGNL+ L+EL + SN + G  P +  +L  + ++    N + G+I  +      +LK 
Sbjct:   157 RQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIP-SEISGCESLKV 215

Query:   119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRI 178
             L L   +EN+ L  ++         LT + +   +L  + P  + N + L  L L+    
Sbjct:   216 LGL---AENL-LEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYF 271

Query:   179 SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPAT-VDLSSNSFEGPLPL---WS 234
             + +IP    +L   +  L +  N+L+G IP  +G    A  +D S N   G +P      
Sbjct:   272 TGSIPREIGKLT-KMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHI 330

Query:   235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294
              N+  L+L +N   GPIPR+ G+ +  L  LD+S N LNG++ + +  L  L+ L + +N
Sbjct:   331 LNLKLLHLFENILLGPIPRELGE-LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDN 389

Query:   295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN 354
              L G+IP L    S+  +LDMS NSLSG IP       ++  L L +N +SG +P  LK 
Sbjct:   390 QLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKT 449

Query:   355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH 414
             C  +  L LGDNQL+G++P  +  ++ +L+ L L  N+ +G I  +L KL  L  L L++
Sbjct:   450 CKSLTKLMLGDNQLTGSLPIELF-NLQNLTALELHQNWLSGNISADLGKLKNLERLRLAN 508

Query:   415 NNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS 474
             NN +G IPP +GN + +      S +  G +   L GS          +  +DLS N  S
Sbjct:   509 NNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKEL-GS-------CVTIQRLDLSGNKFS 560

Query:   475 GEMPVELTRLIHLGTLNLSRNHL 497
             G +  EL +L++L  L LS N L
Sbjct:   561 GYIAQELGQLVYLEILRLSDNRL 583

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 153/428 (35%), Positives = 214/428 (50%)

Query:    19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
             L++L L  N + G +PS +G L  L  L L  N F  SIP S+  LT LK + L +N ++
Sbjct:   180 LQELILDENLIGGAIPSEIGSLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLS 239

Query:    79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
              K P++ G L  +  L LS N+  G I  +   NL NL+ L L     N  L   I + W
Sbjct:   240 SKIPDDIGNLVNLSTLSLSMNKLSGGIPSS-IHNLKNLETLQLEN---NNGLSGEIPAAW 295

Query:   139 IPPFKLTFINIRSCQLGPKFPTWLRN-----QTELTTLVLNNVRISDTIPDWFWQLDLTL 193
             +  F L  + +   +   K   W  N     Q +LT L L +  +   IPDW  +    L
Sbjct:   296 L--FGLQKLKVLRLEGNNKLQ-WNNNGYVFPQFKLTHLSLRSCGLEGNIPDWL-KNQTAL 351

Query:   194 DELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLY---LRDNSFSGP 250
               LD++ N L G  P  L       + LS N   G LP   F    LY   L  N+FSG 
Sbjct:   352 VYLDLSINRLEGRFPKWLADLKIRNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQ 411

Query:   251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
             IP   G+    +  L +S N+ +GSV KSI  +  L  L +S N LSGE PR     S L
Sbjct:   412 IPDTIGESQVMV--LMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFPRFRPE-SYL 468

Query:   311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
               LD+S+N  SG++P   G   S   L++  N+ SGE P + +N S +  LDL DN++SG
Sbjct:   469 EWLDISSNEFSGDVPAYFGG--STSMLLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISG 526

Query:   371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSG 430
              + + I +   S+ +L LR+N   G+IP  +  L +L +LDLS NNL G +P  +GN + 
Sbjct:   527 TVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTC 586

Query:   431 MKVEPPDS 438
             M   P  S
Sbjct:   587 MIKSPEPS 594

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 160/494 (32%), Positives = 250/494 (50%)

Query:    11 SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
             SE    + + ++ +  N L G +PSS G L  L  L L+ NS  GSIP  IGNL  L+EL
Sbjct:   184 SEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLREL 243

Query:    71 YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSENI 128
              L  N + GK P +FG L  V +L++ ENQ  G I      N++ L  L+L  NK +  I
Sbjct:   244 CLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPP-EIGNMTALDTLSLHTNKLTGPI 302

Query:   129 -SLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFW 187
              S + NI +       L  +++   QL    P  L     +  L ++  +++  +PD F 
Sbjct:   303 PSTLGNIKT-------LAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFG 355

Query:   188 QLDLTLDELDVAYNELSGSIPNSLGFRFPATV-DLSSNSFEGPLP---LWSFNVTKLYLR 243
             +L   L+ L +  N+LSG IP  +      TV  L +N+F G LP        +  L L 
Sbjct:   356 KLT-ALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLD 414

Query:   244 DNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRL 303
             DN F GP+P+   +    L  +    NS +G +S++      L  + +SNNN  G++   
Sbjct:   415 DNHFEGPVPKSL-RDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSAN 473

Query:   304 WSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 363
             W     L    +SNNS++G IP  I ++  +  L L +N I+GE+P S+ N + +  L L
Sbjct:   474 WEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQL 533

Query:   364 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPP 423
               N+LSG IP+ I   + +L  L L SN F+  IPP L  LP L+ ++LS N+L   IP 
Sbjct:   534 NGNRLSGKIPSGI-RLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPE 592

Query:   424 CVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTR 483
              +   S +++      + +G +      S++    +L  +  +DLS NNLSG++P     
Sbjct:   593 GLTKLSQLQMLDLSYNQLDGEIS-----SQF---RSLQNLERLDLSHNNLSGQIPPSFKD 644

Query:   484 LIHLGTLNLSRNHL 497
             ++ L  +++S N+L
Sbjct:   645 MLALTHVDVSHNNL 658

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 3.5e-52, Sum P(2) = 3.5e-52
 Identities = 142/432 (32%), Positives = 226/432 (52%)

Query:     7 IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGY-----LKNLRYLELWHNSFVGSIPPSI 61
             IDG         L+KL+      NG + SS+ +     +KNL+ L+L   +FVG +P   
Sbjct:   182 IDGSMPVREFPYLKKLKALDLSSNG-IYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCF 240

Query:    62 GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
             GNL  L+ L LSSNQ+ G  P +F  L ++E L LS+N +EG  +     NL+ LK    
Sbjct:   241 GNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIF 300

Query:   122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDT 181
             + + + + +   I S W P F+L+ + +R C L  K P +L  Q  L  + L+  RIS  
Sbjct:   301 SSKDDMVQV--KIESTWQPLFQLSVLVLRLCSL-EKIPNFLMYQKNLHVVDLSGNRISGI 357

Query:   182 IPDWFWQLDLTLDELDVAYNELS-GSIPNSLGFRFPATVDLSSNSFEGPLPLWSF----- 235
             IP W  + +  L+ L +  N  +   +P S+       +D S N+  G  P  +F     
Sbjct:   358 IPTWLLENNPELEVLQLKNNSFTIFQMPTSV--HNLQVLDFSENNIGGLFPD-NFGRVLP 414

Query:   236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS-ICNLQQLLTLVISNN 294
             N+  +   +N F G  P   G+    ++ LD+S+N+L+G + +S + +   L  L +S+N
Sbjct:   415 NLVHMNGSNNGFQGNFPSSMGEMYN-ISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHN 473

Query:   295 NLSGE-IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLK 353
               SG  +PR  +N +SL +L ++NN  +G+I   + +L+ +  L + NN + GE+PP L 
Sbjct:   474 KFSGHFLPRQ-TNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLL 532

Query:   354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS 413
                 ++ LDL  N LSG +P+ +  S+ +  +L L +N F G IP     L ++ ILDL 
Sbjct:   533 VFEYLNFLDLSGNLLSGALPSHV--SLDN--VLFLHNNNFTGPIPDTF--LGSIQILDLR 586

Query:   414 HNNLSGIIPPCV 425
             +N LSG IP  V
Sbjct:   587 NNKLSGNIPQFV 598

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.6e-52, P = 3.6e-52
 Identities = 160/416 (38%), Positives = 225/416 (54%)

Query:    19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
             LE L +    ++G++PS LG    L  L L+ NS  GSIP  IG LT L++L+L  N + 
Sbjct:   252 LETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLV 311

Query:    79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSENI-SLIFNIS 135
             G  PE  G  S ++++DLS N   G I  +  R LS L+E  +  NK S +I + I N S
Sbjct:   312 GGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGR-LSFLEEFMISDNKFSGSIPTTISNCS 370

Query:   136 SHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LD 194
             S       L  + +   Q+    P+ L   T+LT     + ++  +IP      D T L 
Sbjct:   371 S-------LVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGL--ADCTDLQ 421

Query:   195 ELDVAYNELSGSIPNSLGF-RFPATVDLSSNSFEGPLPLWSFN---VTKLYLRDNSFSGP 250
              LD++ N L+G+IP+ L   R    + L SNS  G +P    N   + +L L  N  +G 
Sbjct:   422 ALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGE 481

Query:   251 IPRDFG--QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS 308
             IP   G  +KI FL   D S N L+G V   I +  +L  + +SNN+L G +P   S++S
Sbjct:   482 IPSGIGSLKKINFL---DFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLS 538

Query:   309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
              L +LD+S N  SG+IP S+G L+S+  LIL  N  SG +P SL  CS +  LDLG N+L
Sbjct:   539 GLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNEL 598

Query:   369 SGNIPAWIGESMPSLSI-LRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPP 423
             SG IP+ +G+ + +L I L L SN   G IP ++  L  L ILDLSHN L G + P
Sbjct:   599 SGEIPSELGD-IENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAP 653

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.6e-52, P = 8.6e-52
 Identities = 161/439 (36%), Positives = 226/439 (51%)

Query:     2 EVSDFIDG-LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
             E S FI   +S CT+   LE L L  NQL G +P  LG L++L +L L+ N   G+IP  
Sbjct:   252 EFSGFIPREISNCTS---LETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPRE 308

Query:    61 IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGII-TE-THFRNLSNLKE 118
             IGNL++  E+  S N + G+ P   G +  +E+L L ENQ  G I  E +  +NLS L +
Sbjct:   309 IGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKL-D 367

Query:   119 LALNKQSENISLIFNISSHWIPPFKLT-FINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177
             L++N  +  I L F         F L  F N  S  + PK   W    ++L  L +++  
Sbjct:   368 LSINALTGPIPLGFQYLRGL---FMLQLFQNSLSGTIPPKLG-WY---SDLWVLDMSDNH 420

Query:   178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGF-RFPATVDLSSNSFEGPLP---LW 233
             +S  IP +   L   +  L++  N LSG+IP  +   +    + L+ N+  G  P     
Sbjct:   421 LSGRIPSYLC-LHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCK 479

Query:   234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN 293
               NVT + L  N F G IPR+ G     L  L ++ N   G + + I  L QL TL IS+
Sbjct:   480 QVNVTAIELGQNRFRGSIPREVGN-CSALQRLQLADNGFTGELPREIGMLSQLGTLNISS 538

Query:   294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLK 353
             N L+GE+P    N   L  LDM  N+ SG +P  +GSL  +  L L NN++SG +P +L 
Sbjct:   539 NKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALG 598

Query:   354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI-LRLRSNYFNGTIPPELCKLPALHILDL 412
             N S +  L +G N  +G+IP  +G S+  L I L L  N   G IPPEL  L  L  L L
Sbjct:   599 NLSRLTELQMGGNLFNGSIPRELG-SLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLL 657

Query:   413 SHNNLSGIIPPCVGNFSGM 431
             ++NNLSG IP    N S +
Sbjct:   658 NNNNLSGEIPSSFANLSSL 676

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	497
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-40
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  186 bits (473), Expect = 6e-51
 Identities = 155/489 (31%), Positives = 242/489 (49%), Gaps = 58/489 (11%)

Query: 19  LEKLELGFNQLNGDLPSSLGYL-KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQM 77
           ++ + L  NQL+G +P  +     +LRYL L +N+F GSIP   G++  L+ L LS+N +
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML 152

Query: 78  NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH 137
           +G+ P + G  S+++VLDL  N   G I  +                      + N++S 
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS----------------------LTNLTS- 189

Query: 138 WIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELD 197
                 L F+ + S QL  + P  L     L  + L    +S  IP     L  +L+ LD
Sbjct: 190 ------LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL-TSLNHLD 242

Query: 198 VAYNELSGSIPNSLG------FRFPATVDLSSNSFEGPLPLWSFNVTKLY---LRDNSFS 248
           + YN L+G IP+SLG      + F     L  N   GP+P   F++ KL    L DNS S
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLF-----LYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 249 GPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS 308
           G IP    Q +  L  L +  N+  G +  ++ +L +L  L + +N  SGEIP+     +
Sbjct: 298 GEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
           +L +LD+S N+L+GEIPE + S  ++  LIL +N + GE+P SL  C  +  + L DN  
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF 428
           SG +P+   + +P +  L + +N   G I      +P+L +L L+ N   G +P    +F
Sbjct: 417 SGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP---DSF 472

Query: 429 SGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLG 488
              ++E  D  + + S  V  K        +L  +  + LS N LSGE+P EL+    L 
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRK------LGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526

Query: 489 TLNLSRNHL 497
           +L+LS N L
Sbjct: 527 SLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  181 bits (460), Expect = 4e-49
 Identities = 148/418 (35%), Positives = 204/418 (48%), Gaps = 19/418 (4%)

Query: 17  SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQ 76
           S L+ L+LG N L G +P+SL  L +L +L L  N  VG IP  +G +  LK +YL  N 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSENI-SLIFN 133
           ++G+ P   G L+++  LDL  N   G I  +   NL NL+ L L  NK S  I   IF+
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 134 ISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTL 193
           +        KL  +++    L  + P  +     L  L L +   +  IP     L   L
Sbjct: 283 LQ-------KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RL 334

Query: 194 DELDVAYNELSGSIPNSLGFRFPATV-DLSSNSFEGPLP---LWSFNVTKLYLRDNSFSG 249
             L +  N+ SG IP +LG     TV DLS+N+  G +P     S N+ KL L  NS  G
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
            IP+  G     L  + +  NS +G +      L  +  L ISNNNL G I     ++ S
Sbjct: 395 EIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS 369
           L +L ++ N   G +P+S GS   +  L L  N  SG VP  L + S +  L L +N+LS
Sbjct: 454 LQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 370 GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN 427
           G IP  +  S   L  L L  N  +G IP    ++P L  LDLS N LSG IP  +GN
Sbjct: 513 GEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  156 bits (396), Expect = 9e-41
 Identities = 123/380 (32%), Positives = 187/380 (49%), Gaps = 52/380 (13%)

Query: 164 NQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPN-----SLGFRFPAT 218
           N + + ++ L+   IS  I    ++L   +  ++++ N+LSG IP+     S   R+   
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPY-IQTINLSNNQLSGPIPDDIFTTSSSLRY--- 122

Query: 219 VDLSSNSFEGPLPLWS-FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS 277
           ++LS+N+F G +P  S  N+  L L +N  SG IP D G     L  LD+  N L G + 
Sbjct: 123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIP 181

Query: 278 KSICNLQQLLTLVISNN------------------------NLSGEIPRLWSNISSLYIL 313
            S+ NL  L  L +++N                        NLSGEIP     ++SL  L
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 373
           D+  N+L+G IP S+G+L ++++L L  N +SG +PPS+ +   + SLDL DN LSG IP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 374 AWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKV 433
             + + + +L IL L SN F G IP  L  LP L +L L  N  SG IP  +G  + + V
Sbjct: 302 ELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 434 EPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMD----------------LSSNNLSGEM 477
               +    G +   L  S  +F   L+  +L                  L  N+ SGE+
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 478 PVELTRLIHLGTLNLSRNHL 497
           P E T+L  +  L++S N+L
Sbjct: 421 PSEFTKLPLVYFLDISNNNL 440

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  155 bits (394), Expect = 1e-40
 Identities = 128/380 (33%), Positives = 196/380 (51%), Gaps = 24/380 (6%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
           GE+   I GL+       L  L+L +N L G +PSSLG LKNL+YL L+ N   G IPPS
Sbjct: 226 GEIPYEIGGLTS------LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 61  IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
           I +L  L  L LS N ++G+ PE   QL  +E+L L  N + G I      +L  L+ L 
Sbjct: 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQ 338

Query: 121 L--NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRI 178
           L  NK S  I    N+  H      LT +++ +  L  + P  L +   L  L+L +  +
Sbjct: 339 LWSNKFSGEIPK--NLGKH----NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 179 SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPAT--VDLSSNSFEGPLPLWSFN 236
              IP        +L  + +  N  SG +P+    + P    +D+S+N+ +G +    ++
Sbjct: 393 EGEIPKSLGACR-SLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 237 VTKLYLRD---NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN 293
           +  L +     N F G +P  FG K   L +LD+S N  +G+V + + +L +L+ L +S 
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKR--LENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLK 353
           N LSGEIP   S+   L  LD+S+N LSG+IP S   +  +  L L  N +SGE+P +L 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 354 NCSMMDSLDLGDNQLSGNIP 373
           N   +  +++  N L G++P
Sbjct: 569 NVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 37/92 (40%), Positives = 55/92 (59%)

Query: 261 FLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSL 320
           F+  L +    L G +   I  L+ L ++ +S N++ G IP    +I+SL +LD+S NS 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 321 SGEIPESIGSLLSVRFLILCNNHISGEVPPSL 352
           +G IPES+G L S+R L L  N +SG VP +L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 289 LVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV 348
           L + N  L G IP   S +  L  +++S NS+ G IP S+GS+ S+  L L  N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 349 PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALH 408
           P SL   + +  L+L  N LSG +PA +G          L    FN T    LC +P L 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGG-------RLLHRASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396
           L L N  + G +P  +     + S++L  N + GNIP  +G S+ SL +L L  N FNG+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481

Query: 397 IPPELCKLPALHILDLSHNNLSGIIPPCVG 426
           IP  L +L +L IL+L+ N+LSG +P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 27  NQ-LNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENF 85
           NQ L G +P+ +  L++L+ + L  NS  G+IPPS+G++T L+ L LS N  NG  PE+ 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 86  GQLSAVEVLDLSENQWEG 103
           GQL+++ +L+L+ N   G
Sbjct: 487 GQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           L+ + L  N + G++P SLG + +L  L+L +NSF GSIP S+G LT L+ L L+ N ++
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 79  GKFPENFG 86
           G+ P   G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296
           +  L L +    G IP D   K+  L  +++S NS+ G++  S+ ++  L  L +S N+ 
Sbjct: 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLL 332
           +G IP     ++SL IL+++ NSLSG +P ++G  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 34/139 (24%)

Query: 358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL 417
           +D L L +  L G IP  I + +  L  + L  N   G IPP L  + +L +LDLS+N+ 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM 477
           +G IP  +G  + +++                                ++L+ N+LSG +
Sbjct: 479 NGSIPESLGQLTSLRI--------------------------------LNLNGNSLSGRV 506

Query: 478 PVEL-TRLIHLGTLNLSRN 495
           P  L  RL+H  + N + N
Sbjct: 507 PAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 9/187 (4%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
           N+T L L +N+ +  IP   G     L +LD+S N +  S+   + NL  L  L +S N+
Sbjct: 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND 174

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           LS ++P+L SN+S+L  LD+S N +S ++P  I  L ++  L L NN I  E+  SL N 
Sbjct: 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL 231

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
             +  L+L +N+L  ++P  IG  + +L  L L +N    +    L  L  L  LDLS N
Sbjct: 232 KNLSGLELSNNKLE-DLPESIGN-LSNLETLDLSNN--QISSISSLGSLTNLRELDLSGN 287

Query: 416 NLSGIIP 422
           +LS  +P
Sbjct: 288 SLSNALP 294

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 55  GSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
           G IP  I  L  L+ + LS N + G  P + G ++++EVLDLS N + G I E+    L+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLT 490

Query: 115 NLKELALNKQS 125
           +L+ L LN  S
Sbjct: 491 SLRILNLNGNS 501

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 27/186 (14%)

Query: 258 KIPFLTDLDISFNSLNGSVSKSICNL----QQLLTLVISNNNLSGEIPRLW-------SN 306
           K+  L  L +  N+L    +K++ +       L  L +S N   G IPR         + 
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTK 79

Query: 307 ISSLYILDMSNNSLSGEIPESIGSLLSVRFL---ILCNNHISGEVPP----SLKNCSM-M 358
              L  LD+S+N+L  +    + SLL    L    L NN +           LK+    +
Sbjct: 80  GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139

Query: 359 DSLDLGDNQLSGNIPAWIGE---SMPSLSILRLRSNYFNGTIPPELCK----LPALHILD 411
           + L LG N+L G     + +   +   L  L L +N         L +       L +LD
Sbjct: 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199

Query: 412 LSHNNL 417
           L++N L
Sbjct: 200 LNNNGL 205

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLK-NLRYLELWHNSFVGSIPPSIGNLTFLK 68
           +SE    + L  L+L  N +  D+P  +G LK NL+ L+L  N  + S+P  + NL  LK
Sbjct: 109 ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLK 166

Query: 69  ELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENI 128
            L LS N ++   P+    LS +  LDLS N+   +  E    +     +L+ N   E +
Sbjct: 167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL 225

Query: 129 SLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD 180
           S + N+         L+ + + + +L    P  + N + L TL L+N +IS 
Sbjct: 226 SSLSNLK-------NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 38/133 (28%)

Query: 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC 424
           D Q       W       +  L L +    G IP ++ KL  L  ++LS N++ G IPP 
Sbjct: 408 DCQFDSTKGKWF------IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS 461

Query: 425 VGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL 484
           +G+ + ++V                                +DLS N+ +G +P  L +L
Sbjct: 462 LGSITSLEV--------------------------------LDLSYNSFNGSIPESLGQL 489

Query: 485 IHLGTLNLSRNHL 497
             L  LNL+ N L
Sbjct: 490 TSLRILNLNGNSL 502

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 26/177 (14%)

Query: 236 NVTKLYLRDNSFSGPIPRDFG--QKIPFLTDLDISFNSLNGS----VSKSICNLQQLLT- 288
            + +L L DN+             +   L +L ++ N L       ++K + +L   L  
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 289 LVISNNNLSGEIPRLWSN----ISSLYILDMSNNSLSGE----IPESIGSLLSVRFLILC 340
           LV+  N L G      +        L  L+++NN +       + E + +  ++  L L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 341 NNHIS-------GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS 390
           NN ++        E   SLK+   ++ L+LGDN L+    A +  ++ S +I  L +
Sbjct: 202 NNGLTDEGASALAETLASLKS---LEVLNLGDNNLTDAGAAALASALLSPNI-SLLT 254

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 43/178 (24%)

Query: 284 QQLLTLVISNNNLSGEIPRLWSNISSLY------------------ILDMSNNSLSGEIP 325
           +Q+ TL++ NN L      L  NI +LY                   +++S N ++ E+P
Sbjct: 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELP 257

Query: 326 ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI 385
           E + S L    L L +N IS  +P +L     +  L + DN +   +PA +   +  L++
Sbjct: 258 ERLPSALQS--LDLFHNKISC-LPENLPE--ELRYLSVYDNSIRT-LPAHLPSGITHLNV 311

Query: 386 LRLRSNYFNGTIPPELCKL---------------PALHILDLSHNNLSGI---IPPCV 425
                     T+PP L  L               P L +LD+S N ++ +   +PP +
Sbjct: 312 QSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTI 369

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	497
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.29
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
PLN03150	623	hypothetical protein; Provisional	98.93
PLN03150	623	hypothetical protein; Provisional	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.31
KOG4341	483	consensus F-box protein containing LRR [General fu	98.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.2
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.03
PRK15386	426	type III secretion protein GogB; Provisional	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.71
PRK15386	426	type III secretion protein GogB; Provisional	97.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.32
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.51
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.3
KOG4308	478	consensus LRR-containing protein [Function unknown	94.08
KOG4308	478	consensus LRR-containing protein [Function unknown	93.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.05
smart00370	26	LRR Leucine-rich repeats, outliers.	90.05
smart00370	26	LRR Leucine-rich repeats, outliers.	89.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.67
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.08
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.11

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-51  Score=445.43  Aligned_cols=471  Identities=32%  Similarity=0.476  Sum_probs=289.5

Q ss_pred             CCCccccCCCCCCCCCCccEEEcCCCCCcccCCccc-cCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 037822            2 EVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGK   80 (497)
Q Consensus         2 ~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~   80 (497)
                      .+|..+..++      +|++|++++|++.+.+|..+ ..+++|++|++++|.+.+.+|.  ..+++|++|++++|.+++.
T Consensus        84 ~~~~~~~~l~------~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~  155 (968)
T PLN00113         84 KISSAIFRLP------YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE  155 (968)
T ss_pred             cCChHHhCCC------CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc
Confidence            3455555555      78888888887776666554 3777777777777776655553  3466666666666666656


Q ss_pred             CCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCc
Q 037822           81 FPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPT  160 (497)
Q Consensus        81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  160 (497)
                      .|..+..+++|++|++++|.+.+.+|. .+.++++|+.|++++|.    ....++..+..+++|+.|++++|.+....|.
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  230 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQ----LVGQIPRELGQMKSLKWIYLGYNNLSGEIPY  230 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCC----CcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence            666666666666666666666554444 56666666666666642    2233455555556666666666666555566


Q ss_pred             cccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccc-cccCCCEEEccCCccccCCCCC---ccc
Q 037822          161 WLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGPLPLW---SFN  236 (497)
Q Consensus       161 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~---~~~  236 (497)
                      .++.+++|+.|++++|.+.+..|..+..+ ++|++|++++|.+.+..|..+ .+++|+.+++++|.+.+..|..   .++
T Consensus       231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  309 (968)
T PLN00113        231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN  309 (968)
T ss_pred             hHhcCCCCCEEECcCceeccccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence            66666666666666666555555555544 356666666665555444333 3455555666555555444432   235


Q ss_pred             cceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccC---------------
Q 037822          237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP---------------  301 (497)
Q Consensus       237 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---------------  301 (497)
                      |+.|++++|.+.+..|..+ ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|               
T Consensus       310 L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  388 (968)
T PLN00113        310 LEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF  388 (968)
T ss_pred             CcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence            5555555555554444333 245555555555555554445555555555555555555444444               


Q ss_pred             ---------cccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccC
Q 037822          302 ---------RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI  372 (497)
Q Consensus       302 ---------~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  372 (497)
                               ..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+
T Consensus       389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~  468 (968)
T PLN00113        389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL  468 (968)
T ss_pred             CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence                     44444555555555555555444445555555555555555555444444455555666666666555555


Q ss_pred             ChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCc
Q 037822          373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS  452 (497)
Q Consensus       373 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  452 (497)
                      |....  .++|+.|++++|++++..|..+..+++|++|++++|.+.+..|+.+.++++|+.|++++|.+...        
T Consensus       469 p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--------  538 (968)
T PLN00113        469 PDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ--------  538 (968)
T ss_pred             Ccccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc--------
Confidence            54331  45677777777777766677777777777788888777777777777777888888887777443        


Q ss_pred             cccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          453 EYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       453 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      .+..+..+++|++|++++|.+++.+|..+..+++|+++++++|++
T Consensus       539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            334456788888889988888888888888888888999888874

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.1e-51  Score=439.89  Aligned_cols=467  Identities=33%  Similarity=0.482  Sum_probs=373.7

Q ss_pred             CCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCcccc-CCCCCCEEECcCCcCcccCCccCCCCCCC
Q 037822           13 CTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIG-NLTFLKELYLSSNQMNGKFPENFGQLSAV   91 (497)
Q Consensus        13 ~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L   91 (497)
                      |....+++.|+++++.+.+..+.+|..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++..|.  ..+++|
T Consensus        65 c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L  142 (968)
T PLN00113         65 CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL  142 (968)
T ss_pred             cCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence            44456899999999999988899999999999999999999877776654 999999999999999876664  568999


Q ss_pred             CEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEE
Q 037822           92 EVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTL  171 (497)
Q Consensus        92 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L  171 (497)
                      ++|++++|.+.+.++. .++++++|+.|++++|.    ....++..+..+++|++|++++|.+....|..++.+++|+.|
T Consensus       143 ~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~----l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        143 ETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNV----LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             CEEECcCCcccccCCh-HHhcCCCCCEEECccCc----ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            9999999999876776 79999999999999963    345677888899999999999999998899999999999999


Q ss_pred             EeeccccccccCchhhhcccCccEEEcccccccccCCccc-cccCCCEEEccCCccccCCCCC---ccccceEecccCcc
Q 037822          172 VLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGPLPLW---SFNVTKLYLRDNSF  247 (497)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~  247 (497)
                      ++++|.+.+..|..+..+ ++|++|++++|.+.+..|..+ .+++|+.+++++|.+.+..|..   ..+|+.|++++|.+
T Consensus       218 ~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             ECcCCccCCcCChhHhcC-CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            999999998899888777 599999999999988877665 5789999999999998877654   45899999999999


Q ss_pred             cccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcc
Q 037822          248 SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPES  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  327 (497)
                      .+.+|..+ ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..
T Consensus       297 ~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        297 SGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             ccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            87777665 57899999999999999888999999999999999999998888988999999999999999887766666


Q ss_pred             cccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhh-----------------------hCCCCC
Q 037822          328 IGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE-----------------------SMPSLS  384 (497)
Q Consensus       328 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~-----------------------~~~~L~  384 (497)
                      +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..                       .+++|+
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence            655555666666555555555555555555555555555555444443332                       144555


Q ss_pred             EEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccC
Q 037822          385 ILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVN  464 (497)
Q Consensus       385 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  464 (497)
                      .|++++|++.+..|..+ ..++|+.|++++|++.+..|..+.++++|+.|++++|.+...        .+..+..+++|+
T Consensus       456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~p~~~~~l~~L~  526 (968)
T PLN00113        456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE--------IPDELSSCKKLV  526 (968)
T ss_pred             EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee--------CChHHcCccCCC
Confidence            55555555544444332 235566666666666666666666677777777777766433        334467788999


Q ss_pred             EEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          465 LMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       465 ~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      +|++++|.+++.+|..|..+++|++|++++|++
T Consensus       527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             EEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence            999999999989999999999999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-38  Score=291.21  Aligned_cols=388  Identities=22%  Similarity=0.234  Sum_probs=209.8

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCC--CEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEE
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNL--RYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLD   95 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L--~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   95 (497)
                      .-+-||+++..+.......+.++-..  +.||+++|+++...+..|.++++|+++++.+|.++ .+|.......+|+.|+
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            34557777777765544555554444  44888888887777777788888888888888877 6676666666788888


Q ss_pred             cCCCccccccChhhhhcCCCCceEeccCccccceeeecccC-CCCCCccccEEEccCCcCCCCCCccccCCCCccEEEee
Q 037822           96 LSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS-HWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLN  174 (497)
Q Consensus        96 l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~  174 (497)
                      +.+|.|++ +....+..++.||.|+++.|.+.     .++. .+....++++|+|++|+|+..-...|..+.+|..|.++
T Consensus       132 L~~N~I~s-v~se~L~~l~alrslDLSrN~is-----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  132 LRHNLISS-VTSEELSALPALRSLDLSRNLIS-----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             eecccccc-ccHHHHHhHhhhhhhhhhhchhh-----cccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            88888776 34446777777777777764322     1111 11111233333333333333333333333333333333


Q ss_pred             ccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChh
Q 037822          175 NVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRD  254 (497)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  254 (497)
                      .|+++..-+..|..+ ++|+.|++..|.+.                                             .+...
T Consensus       206 rNrittLp~r~Fk~L-~~L~~LdLnrN~ir---------------------------------------------ive~l  239 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRL-PKLESLDLNRNRIR---------------------------------------------IVEGL  239 (873)
T ss_pred             cCcccccCHHHhhhc-chhhhhhcccccee---------------------------------------------eehhh
Confidence            333332111222112 12222222222221                                             11122


Q ss_pred             hhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCC
Q 037822          255 FGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSV  334 (497)
Q Consensus       255 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L  334 (497)
                      .+..+++|+.|.+..|.|......+|-.+.++++|+++.|++......++-++++|+.|++++|.|....++.+..+++|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence            23455555566666665554444555555666666666665554444444555566666666666555555555555666


Q ss_pred             cEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCC---cccCCCCCCCEEE
Q 037822          335 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP---PELCKLPALHILD  411 (497)
Q Consensus       335 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~  411 (497)
                      ++|+|+.|.++...+..|..+..|++|++++|.+. .+.+..+.++.+|++||+++|.+...+.   ..|..++.|+.|+
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            66666666655444555555556666666666554 5555555555666666666665543221   2344555566666


Q ss_pred             ccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEE
Q 037822          412 LSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLN  491 (497)
Q Consensus       412 l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~  491 (497)
                      +.+|++..+....|                                .++++||.|||.+|.|....|+.|..+ .|++|-
T Consensus       399 l~gNqlk~I~krAf--------------------------------sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAF--------------------------------SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             ecCceeeecchhhh--------------------------------ccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            66665554444444                                445555666666666655556666655 555554


Q ss_pred             C
Q 037822          492 L  492 (497)
Q Consensus       492 l  492 (497)
                      +
T Consensus       446 ~  446 (873)
T KOG4194|consen  446 M  446 (873)
T ss_pred             h
Confidence            4

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-37  Score=285.70  Aligned_cols=365  Identities=23%  Similarity=0.225  Sum_probs=255.0

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .-+.|++++|.+..+.+..|.++++|+.+++.+|.++ .+|.......+|+.|++.+|.|+..-.+.+..++-|++||++
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4567999999999888888999999999999999998 788877777889999999999998877889999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      .|.|.+ ++...|..-.++++|++++|.|.    .-....|..+.+|..|.|+.|+++...+..|.++++|+.|++..|+
T Consensus       158 rN~is~-i~~~sfp~~~ni~~L~La~N~It----~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  158 RNLISE-IPKPSFPAKVNIKKLNLASNRIT----TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hchhhc-ccCCCCCCCCCceEEeecccccc----ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            999986 55558888899999999997554    3334556667799999999999998888999999999999999999


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccc-cccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhh
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG  256 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  256 (497)
                      +.-.--..|.++ ++|+.+.+..|.+.....+.+ .+..+++++++.|.+.                      .......
T Consensus       233 irive~ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~----------------------~vn~g~l  289 (873)
T KOG4194|consen  233 IRIVEGLTFQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ----------------------AVNEGWL  289 (873)
T ss_pred             eeeehhhhhcCc-hhhhhhhhhhcCcccccCcceeeecccceeecccchhh----------------------hhhcccc
Confidence            863323334444 478888888887764333322 3333333333333332                      1122222


Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      -.++.|+.|++++|.|....+..+..+++|++|+++.|.++...+..|..+..|++|.+++|++......+|..+.+|++
T Consensus       290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK  369 (873)
T ss_pred             cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence            24566666666666666666666666666666666666666555556666666666666666666444555666666666


Q ss_pred             EEeecceeeee---CCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEcc
Q 037822          337 LILCNNHISGE---VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS  413 (497)
Q Consensus       337 L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  413 (497)
                      |+|..|.+...   ....|.++++|+.|++.+|++. .++...+.++++|+.|++.+|.|-...+.+|..+ +|++|.+.
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            66666655432   2334555666666666666665 5555555556666666666666655555556555 55555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-37  Score=274.00  Aligned_cols=448  Identities=25%  Similarity=0.342  Sum_probs=281.9

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .+..++++.|.+. ...+++..+..|.+|++.+|++. ..|.+++.+..++.+++++|++. .+|..+..+.+|..++++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            5677888888887 55567888888888888888887 67788888888888888888888 778888888888888888


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+.. +++ .++.+..|+.++..+     +.+...+..+..+.++..+++.++.+....|..+ +++.|+++|...|.
T Consensus       123 ~n~~~e-l~~-~i~~~~~l~dl~~~~-----N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  123 SNELKE-LPD-SIGRLLDLEDLDATN-----NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL  194 (565)
T ss_pred             ccceee-cCc-hHHHHhhhhhhhccc-----cccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhh
Confidence            888876 344 577777888887776     3345566667777777777777777654444433 37777777777776


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCC---CccccceEecccCcccccCChh
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPL---WSFNVTKLYLRDNSFSGPIPRD  254 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~  254 (497)
                      +. ..|..++.+. +|..|++..|++. .+|++-++..+.++.++.|.+.-....   ..+.+..+++++|++. ..|..
T Consensus       195 L~-tlP~~lg~l~-~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  195 LE-TLPPELGGLE-SLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             hh-cCChhhcchh-hhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence            65 5666666553 6777777777776 444444444555555555544322211   1224444444444444 34443


Q ss_pred             hhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCc--------------------c-----------
Q 037822          255 FGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR--------------------L-----------  303 (497)
Q Consensus       255 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--------------------~-----------  303 (497)
                      ++ .+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+.+.-.+                    .           
T Consensus       271 ~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  271 IC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             HH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            32 3444444444444444 333444444 444444444432210000                    0           


Q ss_pred             ----------cccCCCCCEEECccCcccccCCccccccc--CCcEEEeecceeeeeCCcccccCCCCCE-EecCCCcCcc
Q 037822          304 ----------WSNISSLYILDMSNNSLSGEIPESIGSLL--SVRFLILCNNHISGEVPPSLKNCSMMDS-LDLGDNQLSG  370 (497)
Q Consensus       304 ----------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~-L~l~~~~i~~  370 (497)
                                ....-+.+.|++++-+++..+.+.|..-.  -....++++|++. .+|..+..+..+.+ +.+++|.+. 
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-  425 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-  425 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-
Confidence                      00011223333333333322112221111  1333444444443 33333333332222 333344433 


Q ss_pred             cCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeee
Q 037822          371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLK  450 (497)
Q Consensus       371 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  450 (497)
                      -+|..+.+ +++|..|++++|.+. .+|..++.+..|+.|+++.|.|. ..|.++..+..++++..+.+++...      
T Consensus       426 fv~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v------  496 (565)
T KOG0472|consen  426 FVPLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV------  496 (565)
T ss_pred             cchHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc------
Confidence            55555554 888889999888877 67888888888999999999887 7888888888888888887877432      


Q ss_pred             CccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          451 GSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       451 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                        .+.-+..+..|..||+.+|.+. .+|..++++.+|++|+|.+|||
T Consensus       497 --d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  497 --DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             --ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence              3334678999999999999997 6788899999999999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-33  Score=274.19  Aligned_cols=439  Identities=25%  Similarity=0.291  Sum_probs=281.6

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +|+.|++++|++. .+|..+..+++|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|+.|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            5888888888887 66778888888888888888887 66777888888888888888777 778888888888888888


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+.. +|. .+..+..++.+..++|. ....       ++.. .++.+++..+.+...++..+..+..  .+++.+|.
T Consensus       123 ~N~f~~-~Pl-~i~~lt~~~~~~~s~N~-~~~~-------lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~  189 (1081)
T KOG0618|consen  123 FNHFGP-IPL-VIEVLTAEEELAASNNE-KIQR-------LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNE  189 (1081)
T ss_pred             hhccCC-Cch-hHHhhhHHHHHhhhcch-hhhh-------hccc-cchhhhhhhhhcccchhcchhhhhe--eeecccch
Confidence            888765 454 56667777777776641 1011       1111 2666677777666666665655554  58888888


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCC-ccccceEecccCcccccCChhhh
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW-SFNVTKLYLRDNSFSGPIPRDFG  256 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~  256 (497)
                      +.......    .++++.+....|.+...   ....++++.+..+.|.+....... +.+++.++++++++. .+| ...
T Consensus       190 ~~~~dls~----~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp-~wi  260 (1081)
T KOG0618|consen  190 MEVLDLSN----LANLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLP-EWI  260 (1081)
T ss_pred             hhhhhhhh----ccchhhhhhhhcccceE---EecCcchheeeeccCcceeeccccccccceeeecchhhhh-cch-HHH
Confidence            76222221    24677777777765521   224567788888888877544443 338889999999887 667 444


Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccC-Cc
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLS-VR  335 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~-L~  335 (497)
                      ..+++|+.++..+|.+. ..|..+....+|+.+.+..|.+. ..|.....+.+|+.|++..|.+....+..+..... |+
T Consensus       261 ~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN  338 (1081)
T ss_pred             HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence            67889999999999885 66777777788888888888887 66767777888999999888887433333333222 55


Q ss_pred             EEEeecceeeeeCCc-ccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccC
Q 037822          336 FLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH  414 (497)
Q Consensus       336 ~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  414 (497)
                      .|+.+.+.+. ..|. .=...+.|+.|.+.+|.+++..-..+. ++..|+.|+++.|++.......+.+++.|++|+|||
T Consensus       339 ~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG  416 (1081)
T KOG0618|consen  339 TLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG  416 (1081)
T ss_pred             HHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence            5555555554 2221 111234556666666666544333222 255666666666666533233455666666666666


Q ss_pred             CcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCC
Q 037822          415 NNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSR  494 (497)
Q Consensus       415 n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~  494 (497)
                      |+++ .+|.++.++..|++|..-+|++....          -+..++.|+.+|+|.|.++...-..-..-|+|++||++|
T Consensus       417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP----------e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG  485 (1081)
T KOG0618|consen  417 NKLT-TLPDTVANLGRLHTLRAHSNQLLSFP----------ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG  485 (1081)
T ss_pred             chhh-hhhHHHHhhhhhHHHhhcCCceeech----------hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence            6666 45566666666666666655553322          224456666666666666543211111115666666666


Q ss_pred             CC
Q 037822          495 NH  496 (497)
Q Consensus       495 n~  496 (497)
                      |.
T Consensus       486 N~  487 (1081)
T KOG0618|consen  486 NT  487 (1081)
T ss_pred             Cc
Confidence            63

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.7e-33  Score=260.99  Aligned_cols=365  Identities=23%  Similarity=0.340  Sum_probs=259.9

Q ss_pred             CCCCCEEECCCCccc-ccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCce
Q 037822           40 LKNLRYLELWHNSFV-GSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE  118 (497)
Q Consensus        40 l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  118 (497)
                      ++-.|-+|+++|.++ +.+|.....+++++.|.+...++. .+|+.++.+.+|++|.+++|++..+.  ..+..++.||.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHH
Confidence            344555666666665 346666666666666666666665 56666666677777777776665421  13555566666


Q ss_pred             EeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEc
Q 037822          119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV  198 (497)
Q Consensus       119 L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  198 (497)
                      +.+..|+..                           ...+|..+.++..|+.||+++|++. ..|..+... +++-.|++
T Consensus        83 v~~R~N~LK---------------------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A-Kn~iVLNL  133 (1255)
T KOG0444|consen   83 VIVRDNNLK---------------------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA-KNSIVLNL  133 (1255)
T ss_pred             Hhhhccccc---------------------------cCCCCchhcccccceeeecchhhhh-hcchhhhhh-cCcEEEEc
Confidence            655553211                           1234455556666666666666665 455554433 35556666


Q ss_pred             ccccccccCCccc--cccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecc
Q 037822          199 AYNELSGSIPNSL--GFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV  276 (497)
Q Consensus       199 ~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  276 (497)
                      ++|+|.. +|..+  .+.                     .|-.|++++|++. ..|..+ ..+..|++|++++|++.-.-
T Consensus       134 S~N~Iet-IPn~lfinLt---------------------DLLfLDLS~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQ  189 (1255)
T KOG0444|consen  134 SYNNIET-IPNSLFINLT---------------------DLLFLDLSNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQ  189 (1255)
T ss_pred             ccCcccc-CCchHHHhhH---------------------hHhhhccccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHH
Confidence            6666542 22111  111                     3444555555554 556555 46788888889988876444


Q ss_pred             cccccCcCCccEEEeecceee-cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccC
Q 037822          277 SKSICNLQQLLTLVISNNNLS-GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC  355 (497)
Q Consensus       277 ~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  355 (497)
                      -..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|+|++|.++ ........+
T Consensus       190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W  267 (1255)
T KOG0444|consen  190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEW  267 (1255)
T ss_pred             HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHH
Confidence            445556778888888886543 357888889999999999999998 78889999999999999999998 555667788


Q ss_pred             CCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc-CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCccc
Q 037822          356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVE  434 (497)
Q Consensus       356 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  434 (497)
                      .+|++|+++.|+++ .+|..++. ++.|++|.+.+|+++- .+|++++.+.+|+.+..++|.+. .+|+.+..|.+|+.|
T Consensus       268 ~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             hhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            99999999999999 99999987 9999999999999874 47899999999999999999998 899999999999999


Q ss_pred             CCCCCcccccceeeeeCccccccccccccCEEEccCCccc
Q 037822          435 PPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS  474 (497)
Q Consensus       435 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  474 (497)
                      .++.|.+.+.         |..+.-++.|+.||+..|.--
T Consensus       345 ~L~~NrLiTL---------PeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  345 KLDHNRLITL---------PEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cccccceeec---------hhhhhhcCCcceeeccCCcCc
Confidence            8888887443         344566788888888888543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=2.6e-34  Score=255.11  Aligned_cols=430  Identities=25%  Similarity=0.327  Sum_probs=241.6

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .+.+|++.+|+.. ..|.+++.+..++.+++++|++. .+|+++..+..|+.+++++|.+. ..++.++.+..|+.++..
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence            6777777777776 45556777777777777777766 56666777777777777777666 555666666666666666


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|++.+ .|. .+..+.+|..+.+.+|     ...+.+.....++.|+++++..|.+. .+|+.++.+.+|..|++..|+
T Consensus       146 ~N~i~s-lp~-~~~~~~~l~~l~~~~n-----~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  146 NNQISS-LPE-DMVNLSKLSKLDLEGN-----KLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             cccccc-Cch-HHHHHHHHHHhhcccc-----chhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence            666654 333 3444555555555442     22233333333444444444444332 233444444444444444444


Q ss_pred             ccc---------------------ccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCC-cc
Q 037822          178 ISD---------------------TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW-SF  235 (497)
Q Consensus       178 ~~~---------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~  235 (497)
                      +..                     ..|...+...+++..|++..|++.+...+..-+++++.+|+++|.+++..+.. .-
T Consensus       218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence            430                     33333332223445555555555433333334444555555555554433221 11


Q ss_pred             ccceEecccCcccccCChhhhc-----CCCCccE----EEcccCcce--------ecccccccCcCCccEEEeecceeec
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQ-----KIPFLTD----LDISFNSLN--------GSVSKSICNLQQLLTLVISNNNLSG  298 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~----L~l~~~~i~--------~~~~~~l~~l~~L~~L~l~~n~~~~  298 (497)
                      +|+.+.+.||.+. .+-..+..     -++.|+.    =-++...-+        ...........+.+.|++++-+++ 
T Consensus       298 hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-  375 (565)
T KOG0472|consen  298 HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-  375 (565)
T ss_pred             eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-
Confidence            4444444444332 11111100     0000110    000000000        000011222446777888777776 


Q ss_pred             ccCcccccC---CCCCEEECccCcccccCCcccccccCCcE-EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh
Q 037822          299 EIPRLWSNI---SSLYILDMSNNSLSGEIPESIGSLLSVRF-LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA  374 (497)
Q Consensus       299 ~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~l~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  374 (497)
                      ..|..+..-   .-+..++++.|++. +.|..+..+..+.+ +.++.|.+. -+|..+..+++|+.|++++|.+. .+|.
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~  452 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPE  452 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcch
Confidence            444433222   23777888888886 66766665555443 344555553 56667777888888888888776 7777


Q ss_pred             hHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccc
Q 037822          375 WIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEY  454 (497)
Q Consensus       375 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  454 (497)
                      ..++ +..|+.|+++.|++. .+|..+..+..++.+-.++|++....|+.+.++.+|++|++.+|-+....+.       
T Consensus       453 e~~~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-------  523 (565)
T KOG0472|consen  453 EMGS-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-------  523 (565)
T ss_pred             hhhh-hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-------
Confidence            7776 667888888888776 6777777777777777777888766666688888888888888877544333       


Q ss_pred             cccccccccCEEEccCCccc
Q 037822          455 VFYTTLYLVNLMDLSSNNLS  474 (497)
Q Consensus       455 ~~~~~~~~L~~L~l~~n~~~  474 (497)
                        ++.+.+|+.|++++|.+.
T Consensus       524 --LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  524 --LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             --hccccceeEEEecCCccC
Confidence              577888888888888887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=8.2e-32  Score=262.66  Aligned_cols=440  Identities=24%  Similarity=0.273  Sum_probs=255.5

Q ss_pred             ccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCC
Q 037822           19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE   98 (497)
Q Consensus        19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   98 (497)
                      +..|+++.|-+.+...+.+.+..+|+.||+++|.+. .+|..+..+.+|+.|+++.|-|. ..|....++.+|+.+++.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence            444555555444332333334444555555555554 45555555555555555555555 4445555555555555555


Q ss_pred             CccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecccc
Q 037822           99 NQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRI  178 (497)
Q Consensus        99 n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  178 (497)
                      |++.. .|. .+..+++|+.|+++.|     ....+|..+..++.++.+..++|.....    ++... ++.+++..+.+
T Consensus       101 n~l~~-lP~-~~~~lknl~~LdlS~N-----~f~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l  168 (1081)
T KOG0618|consen  101 NRLQS-LPA-SISELKNLQYLDLSFN-----HFGPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVL  168 (1081)
T ss_pred             chhhc-Cch-hHHhhhcccccccchh-----ccCCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhc
Confidence            55543 333 4555555555555552     2223344444444444444444411111    11111 44445544444


Q ss_pred             ccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcC
Q 037822          179 SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQK  258 (497)
Q Consensus       179 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  258 (497)
                      .+..+.+...+. .  .+++.+|.+.  ....-.+..++.+....|.+.... ..-+.++.++.++|.++ .....  ..
T Consensus       169 ~~~~~~~i~~l~-~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~-~~g~~l~~L~a~~n~l~-~~~~~--p~  239 (1081)
T KOG0618|consen  169 GGSFLIDIYNLT-H--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE-ISGPSLTALYADHNPLT-TLDVH--PV  239 (1081)
T ss_pred             ccchhcchhhhh-e--eeecccchhh--hhhhhhccchhhhhhhhcccceEE-ecCcchheeeeccCcce-eeccc--cc
Confidence            444444333221 1  3555555554  222223344444444444433211 11225556666666554 22111  23


Q ss_pred             CCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEE
Q 037822          259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI  338 (497)
Q Consensus       259 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  338 (497)
                      ..++++++++++.+. ..|.++..+.+|+.+...+|.+. ..|..+...++|+.|.+..|.+. -+|.......+|+.|+
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            445666666666665 33466666666666666666664 55555555666666666666665 3444455566666666


Q ss_pred             eecceeeeeCCcc-cccCCC-CCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          339 LCNNHISGEVPPS-LKNCSM-MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       339 l~~~~~~~~~~~~-~~~~~~-L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |..|.+. ..|.. +..... |+.|+.+.+.+. ..|..-...++.|+.|++.+|.+++.....+.+.++|+.|+|++|.
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            6666665 33332 222222 555666666554 4443333345678899999999998777789999999999999999


Q ss_pred             CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCC
Q 037822          417 LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       417 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~  496 (497)
                      +.......+.++..|+.|.+++|++.+..         ..+..++.|++|...+|.+. ..| .+..+++|+.+|+|.|+
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~~Lp---------~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLTTLP---------DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhhhhh---------HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence            99666677899999999999999986543         33567899999999999998 667 78999999999999997


Q ss_pred             C
Q 037822          497 L  497 (497)
Q Consensus       497 i  497 (497)
                      +
T Consensus       464 L  464 (1081)
T KOG0618|consen  464 L  464 (1081)
T ss_pred             h
Confidence            5

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=5.6e-30  Score=239.79  Aligned_cols=367  Identities=20%  Similarity=0.310  Sum_probs=263.2

Q ss_pred             CCCccEEEcCCCCCc-ccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEE
Q 037822           16 SSLLEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL   94 (497)
Q Consensus        16 ~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   94 (497)
                      +|-++-+|+++|.+. +.+|.+...++.++.|.+...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            457788999999988 678999999999999999999887 78999999999999999999987 555678889999999


Q ss_pred             EcCCCccccc-cChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEe
Q 037822           95 DLSENQWEGI-ITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVL  173 (497)
Q Consensus        95 ~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l  173 (497)
                      +++.|++... +|. .+-++..|..|++++|+     ....|..+...+.+-.|+|++|+|.+...+-+.++..|-.||+
T Consensus        84 ~~R~N~LKnsGiP~-diF~l~dLt~lDLShNq-----L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQ-----LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hhhccccccCCCCc-hhcccccceeeecchhh-----hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            9999987633 555 45567778888777733     3334444444444555555555554433344445555555555


Q ss_pred             eccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCC---ccccceEecccCccc-c
Q 037822          174 NNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW---SFNVTKLYLRDNSFS-G  249 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~  249 (497)
                      ++|++. ..|..+..+ ..|+.|++++|++                       .-.-...   ...|+.|.+++.+-+ .
T Consensus       158 S~NrLe-~LPPQ~RRL-~~LqtL~Ls~NPL-----------------------~hfQLrQLPsmtsL~vLhms~TqRTl~  212 (1255)
T KOG0444|consen  158 SNNRLE-MLPPQIRRL-SMLQTLKLSNNPL-----------------------NHFQLRQLPSMTSLSVLHMSNTQRTLD  212 (1255)
T ss_pred             ccchhh-hcCHHHHHH-hhhhhhhcCCChh-----------------------hHHHHhcCccchhhhhhhcccccchhh
Confidence            555543 333333333 2444555544443                       2111111   125556666665322 2


Q ss_pred             cCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccc
Q 037822          250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG  329 (497)
Q Consensus       250 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  329 (497)
                      .+|..+ ..+.+|..++++.|.+. ..|+.+-.+++|+.|++|+|.++ .+..+.....+|+.|+++.|+++ ..|.++.
T Consensus       213 N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc  288 (1255)
T KOG0444|consen  213 NIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC  288 (1255)
T ss_pred             cCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence            455554 56888888888888887 67777888888888899888888 56666677788888889988887 7788888


Q ss_pred             cccCCcEEEeecceeee-eCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCC
Q 037822          330 SLLSVRFLILCNNHISG-EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALH  408 (497)
Q Consensus       330 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~  408 (497)
                      .+++|+.|.+.+|+++- -+|+.++++.+|+.+..++|.+. .+|+.++. |..|++|.+++|++. .+|+++..++.|+
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR-C~kL~kL~L~~NrLi-TLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR-CVKLQKLKLDHNRLI-TLPEAIHLLPDLK  365 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh-hHHHHHhccccccee-echhhhhhcCCcc
Confidence            88888888888887752 36788888888888888888886 88888876 888888888888887 6888888888888


Q ss_pred             EEEccCCcCcCCCC
Q 037822          409 ILDLSHNNLSGIIP  422 (497)
Q Consensus       409 ~L~l~~n~i~~~~~  422 (497)
                      .||+..|+-..-.|
T Consensus       366 vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  366 VLDLRENPNLVMPP  379 (1255)
T ss_pred             eeeccCCcCccCCC
Confidence            88888887653444

>PLN03210 Resistant to P

Probab=99.92  E-value=2.4e-23  Score=225.64  Aligned_cols=341  Identities=19%  Similarity=0.203  Sum_probs=182.8

Q ss_pred             cCCccccCCCCCCEEECCCCcc------cccCCccccCCC-CCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccc
Q 037822           32 DLPSSLGYLKNLRYLELWHNSF------VGSIPPSIGNLT-FLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGI  104 (497)
Q Consensus        32 ~~~~~~~~l~~L~~L~l~~~~l------~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  104 (497)
                      ..+.+|.++++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+.. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-
Confidence            4456788999999999866532      224667777765 5999999999887 667776 57899999999998875 


Q ss_pred             cChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCc
Q 037822          105 ITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPD  184 (497)
Q Consensus       105 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  184 (497)
                      ++. .+..+++|+.|+++++.    ....++ .+..+++|+.|++.+|.....+|..+..+++|+.|++++|......|.
T Consensus       626 L~~-~~~~l~~Lk~L~Ls~~~----~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        626 LWD-GVHSLTGLRNIDLRGSK----NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             ccc-ccccCCCCCEEECCCCC----CcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            333 46778889999988742    222333 356677888888888776667777788888888888887754445554


Q ss_pred             hhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCC-CccccceEecccCcccc------cCChhhhc
Q 037822          185 WFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPL-WSFNVTKLYLRDNSFSG------PIPRDFGQ  257 (497)
Q Consensus       185 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~  257 (497)
                      .. . .++|+.|++++|......|..  ..+++.++++++.+...... .+++|+.|.+.++....      ..+.....
T Consensus       700 ~i-~-l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        700 GI-N-LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             cC-C-CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence            43 2 246777777776543333321  23455555555554322111 12344444444322100      00000111


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .++.|+.|++++|......|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|..   .++|++|
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L  851 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL  851 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe
Confidence            23344444444444333444444444444444444443222333332 3444444444444322122211   2344444


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN  391 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n  391 (497)
                      ++++|.+. .+|..+..+++|+.|++++|.-...++..+.. +++|+.+++++|
T Consensus       852 ~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~-L~~L~~L~l~~C  903 (1153)
T PLN03210        852 NLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK-LKHLETVDFSDC  903 (1153)
T ss_pred             ECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccc-ccCCCeeecCCC
Confidence            44444443 33444444444444444443222233333222 444444444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=1.6e-22  Score=219.42  Aligned_cols=330  Identities=20%  Similarity=0.259  Sum_probs=257.4

Q ss_pred             CccEEEcCCCC------CcccCCccccCCC-CCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCC
Q 037822           18 LLEKLELGFNQ------LNGDLPSSLGYLK-NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSA   90 (497)
Q Consensus        18 ~L~~L~l~~~~------i~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~   90 (497)
                      +|+.|.+..+.      +...+|..|..++ +|+.|.+.++.+. .+|..| ...+|++|++.+|.+. .++..+..+++
T Consensus       559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~  635 (1153)
T PLN03210        559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTG  635 (1153)
T ss_pred             cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCC
Confidence            88888886543      2334666777764 6999999999887 677776 5789999999999988 67788889999


Q ss_pred             CCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccE
Q 037822           91 VEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTT  170 (497)
Q Consensus        91 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  170 (497)
                      |+.|+++++.....++  .+..+++|+.|++.+|    .....++..+..+++|+.|++++|.....+|..+ .+++|+.
T Consensus       636 Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c----~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~  708 (1153)
T PLN03210        636 LRNIDLRGSKNLKEIP--DLSMATNLETLKLSDC----SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR  708 (1153)
T ss_pred             CCEEECCCCCCcCcCC--ccccCCcccEEEecCC----CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence            9999999876433455  3778899999999886    3456677888888999999999987666667655 7899999


Q ss_pred             EEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCcccc----------CCCCCccccceE
Q 037822          171 LVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG----------PLPLWSFNVTKL  240 (497)
Q Consensus       171 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~----------~~~~~~~~L~~L  240 (497)
                      |++++|......|..    ..+|++|+++++.+. ..|..+.+++|..|.+.++....          .....+++|+.|
T Consensus       709 L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        709 LNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EeCCCCCCccccccc----cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence            999998755444432    258999999999876 56666677888888777643211          111224589999


Q ss_pred             ecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcc
Q 037822          241 YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSL  320 (497)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  320 (497)
                      ++++|.....+|..+ ..+++|+.|++++|...+..|... .+++|+.|++++|.....+|..   .++|++|++++|.+
T Consensus       784 ~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        784 FLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI  858 (1153)
T ss_pred             eCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCC
Confidence            999998776788876 579999999999987555566555 6899999999998755455543   46899999999999


Q ss_pred             cccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcC
Q 037822          321 SGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL  368 (497)
Q Consensus       321 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i  368 (497)
                      . ..|..+..+++|++|++++|.-...++.....+++|+.+++++|.-
T Consensus       859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            8 6788899999999999999765446777788899999999999953

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=2.1e-26  Score=204.70  Aligned_cols=96  Identities=22%  Similarity=0.295  Sum_probs=72.8

Q ss_pred             ccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCccc
Q 037822          249 GPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI  328 (497)
Q Consensus       249 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l  328 (497)
                      +..|...++.+++|++|++++|++++....+|.+...+++|.+..|++......+|.++..|+.|++++|+|+...|.+|
T Consensus       263 ~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  263 SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             CcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence            35566666777888888888888877777777777888888888887776666677777888888888888877777777


Q ss_pred             ccccCCcEEEeeccee
Q 037822          329 GSLLSVRFLILCNNHI  344 (497)
Q Consensus       329 ~~~~~L~~L~l~~~~~  344 (497)
                      ....+|.+|.+-.|.+
T Consensus       343 ~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  343 QTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cccceeeeeehccCcc
Confidence            7777788887776655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=2.3e-24  Score=191.79  Aligned_cols=419  Identities=22%  Similarity=0.205  Sum_probs=236.5

Q ss_pred             EEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCC-Cc
Q 037822           22 LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE-NQ  100 (497)
Q Consensus        22 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~  100 (497)
                      ++.++..++ .+|..+.  ..-..++|..|+|+.+.|.+|+.+++||.|||++|.|+.+.|++|.++++|.+|-+.+ |+
T Consensus        51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            455555555 3444443  3556778888888877778888899999999999998888888898888888877776 88


Q ss_pred             cccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecccccc
Q 037822          101 WEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD  180 (497)
Q Consensus       101 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  180 (497)
                      |++ ++..+|+.+..|+.|.+.-|.++    ....+.+..++.+..|.+.++.+.......+..+..++.+.+..|.+..
T Consensus       128 I~~-l~k~~F~gL~slqrLllNan~i~----Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic  202 (498)
T KOG4237|consen  128 ITD-LPKGAFGGLSSLQRLLLNANHIN----CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC  202 (498)
T ss_pred             hhh-hhhhHhhhHHHHHHHhcChhhhc----chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc
Confidence            876 66668888888888777654322    1122223333344444444443332222234444444444444443211


Q ss_pred             ccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCC
Q 037822          181 TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIP  260 (497)
Q Consensus       181 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  260 (497)
                      .         .+|+++                    .. ++..+.+.   -.++.-..-..+.+.++...-+..+.....
T Consensus       203 d---------CnL~wl--------------------a~-~~a~~~ie---tsgarc~~p~rl~~~Ri~q~~a~kf~c~~e  249 (498)
T KOG4237|consen  203 D---------CNLPWL--------------------AD-DLAMNPIE---TSGARCVSPYRLYYKRINQEDARKFLCSLE  249 (498)
T ss_pred             c---------cccchh--------------------hh-HHhhchhh---cccceecchHHHHHHHhcccchhhhhhhHH
Confidence            0         011111                    00 00000000   000111111112222222111222211111


Q ss_pred             CccEEEcccC-cceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822          261 FLTDLDISFN-SLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL  339 (497)
Q Consensus       261 ~L~~L~l~~~-~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  339 (497)
                      .+..--.+.+ .........|..+++|++|++++|.++..-..+|.....+++|.+..|++.......|..+..|+.|+|
T Consensus       250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L  329 (498)
T KOG4237|consen  250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSL  329 (498)
T ss_pred             hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeee
Confidence            1111111222 222223345888999999999999999888899999999999999999998667778999999999999


Q ss_pred             ecceeeeeCCcccccCCCCCEEecCCCcCccc-CChhHhh--------------hCCCCCEEEccCccccc---CCCccc
Q 037822          340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGN-IPAWIGE--------------SMPSLSILRLRSNYFNG---TIPPEL  401 (497)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~--------------~~~~L~~L~l~~n~~~~---~~~~~l  401 (497)
                      ++|+|+...|.+|....+|.+|.+-.|++.-. -..++.+              .+..++.+.++...+.+   ..|+..
T Consensus       330 ~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~  409 (498)
T KOG4237|consen  330 YDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEEL  409 (498)
T ss_pred             cCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCcccc
Confidence            99999988899999999999999998876421 1122222              12234455554433221   011100


Q ss_pred             ---------CCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCc
Q 037822          402 ---------CKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNN  472 (497)
Q Consensus       402 ---------~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  472 (497)
                               ..++.+.++.=..|+....+|..+..  .-..|.+.++.+....-           ..+.+| .+|+++|+
T Consensus       410 ~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~--d~telyl~gn~~~~vp~-----------~~~~~l-~~dls~n~  475 (498)
T KOG4237|consen  410 GCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPV--DVTELYLDGNAITSVPD-----------ELLRSL-LLDLSNNR  475 (498)
T ss_pred             CCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCc--hhHHHhcccchhcccCH-----------HHHhhh-hcccccCc
Confidence                     11122221111111111122222110  11123344444321110           134566 78999999


Q ss_pred             ccccCChhhhccCCCCeEECCCC
Q 037822          473 LSGEMPVELTRLIHLGTLNLSRN  495 (497)
Q Consensus       473 ~~~~~~~~l~~l~~L~~l~l~~n  495 (497)
                      ++...-..|.++.+|.+|-|++|
T Consensus       476 i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  476 ISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             eehhhcccccchhhhheeEEecC
Confidence            98666677889999999998886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=1.4e-19  Score=182.71  Aligned_cols=265  Identities=23%  Similarity=0.235  Sum_probs=143.4

Q ss_pred             CCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccC
Q 037822          166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDN  245 (497)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~  245 (497)
                      .+-..|+++++.++ .+|..+.   ++++.|++.+|.++. +|.  ..+.|+.|++++|.++.. |..+++|+.|++.+|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCcc-cCcccccceeeccCC
Confidence            34556777777766 4565543   367777777777663 332  135666666666666643 334456666666666


Q ss_pred             cccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCC
Q 037822          246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP  325 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  325 (497)
                      .+. .+|.    .++.|+.|++++|.++. .|.   .+++|+.|++++|.+. .+|..   ..+|+.|++++|.+++ +|
T Consensus       273 ~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        273 PLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             chh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC---cccccccccccCcccc-cc
Confidence            654 3332    23456666666666652 222   2355666666666665 23322   2345666666666652 33


Q ss_pred             cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCC
Q 037822          326 ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLP  405 (497)
Q Consensus       326 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  405 (497)
                      .   ...+|++|++++|.+. .+|..   .++|+.|++++|.+. .+|..    +++|+.|++++|+++ .+|..   .+
T Consensus       339 ~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt-~LP~l---~s  402 (788)
T PRK15387        339 T---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVL---PS  402 (788)
T ss_pred             c---cccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCccc-CCCCc---cc
Confidence            2   1235666666666665 33322   245566666666665 44432    345666666666665 34432   24


Q ss_pred             CCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhh
Q 037822          406 ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVEL  481 (497)
Q Consensus       406 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  481 (497)
                      +|+.|++++|++.. +|...   .+|+.|++++|++..         .+..+..+++|+.|++++|++++..+..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~---------LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR---------LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc---------cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            56666666666663 34322   344555555555532         12223445556666666666655544444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=5.5e-19  Score=178.51  Aligned_cols=259  Identities=24%  Similarity=0.319  Sum_probs=160.0

Q ss_pred             cccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEcc
Q 037822          143 KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLS  222 (497)
Q Consensus       143 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~  222 (497)
                      .-..|+++++.+. .+|..+.  ++|+.|++.+|.++. .|.    ..++|++|++++|.++. +|..  .+.|+.|++.
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~l--p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVL--PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCc--ccccceeecc
Confidence            3445666666665 3454443  366777777776653 332    22567777777776663 3322  3466777777


Q ss_pred             CCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCc
Q 037822          223 SNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR  302 (497)
Q Consensus       223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  302 (497)
                      +|.+... |..+.+|+.|++++|++. .+|.    .+++|+.|++++|.+.+. |..   ..+|+.|++++|.++ .+|.
T Consensus       271 ~N~L~~L-p~lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~  339 (788)
T PRK15387        271 SNPLTHL-PALPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPT  339 (788)
T ss_pred             CCchhhh-hhchhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CCC---cccccccccccCccc-cccc
Confidence            7766543 224456777777777766 4443    346677777777777642 221   245667777777776 3443


Q ss_pred             ccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCC
Q 037822          303 LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPS  382 (497)
Q Consensus       303 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~  382 (497)
                      .   .++|+.|++++|+++. +|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|++. .+|..    +++
T Consensus       340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l----~s~  403 (788)
T PRK15387        340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL----PSE  403 (788)
T ss_pred             c---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc----ccC
Confidence            1   2467777777777763 3322   346777777777776 34432   246777777777776 45532    456


Q ss_pred             CCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccccc
Q 037822          383 LSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGS  444 (497)
Q Consensus       383 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  444 (497)
                      |+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|.++.+++.|+.|++++|++...
T Consensus       404 L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        404 LKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            777777777776 35532   345677777777777 5677777777777777777777544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.3e-18  Score=175.23  Aligned_cols=250  Identities=21%  Similarity=0.327  Sum_probs=146.3

Q ss_pred             CccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCc
Q 037822          192 TLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNS  271 (497)
Q Consensus       192 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  271 (497)
                      +...|+++++.++. +|..+ .+.+..+++++|.+.......+.+|+.|++++|.+. .+|..+   .+.|+.|++++|.
T Consensus       179 ~~~~L~L~~~~Lts-LP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATL---PDTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCc-CCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhh---hccccEEECcCCc
Confidence            46677777776663 34322 245677777777776554444457777777777766 455433   3457777777777


Q ss_pred             ceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcc
Q 037822          272 LNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPS  351 (497)
Q Consensus       272 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  351 (497)
                      +. ..|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|.++. .|..+  .++|+.|++++|.+. .+|..
T Consensus       253 L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-~LP~~  322 (754)
T PRK15370        253 IT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-ALPET  322 (754)
T ss_pred             cC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-cCCcc
Confidence            66 3344332  46777777777766 4554432  467777777777663 33322  235677777777765 34433


Q ss_pred             cccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCC
Q 037822          352 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGM  431 (497)
Q Consensus       352 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L  431 (497)
                      +  .++|+.|++++|.++ .+|..+   +++|+.|++++|+++ .+|..+  .+.|+.|++++|++. .+|..+.  ..|
T Consensus       323 l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL  390 (754)
T PRK15370        323 L--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AAL  390 (754)
T ss_pred             c--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHH
Confidence            2  256777777777766 455443   356777777777766 455433  256777777777776 3444443  246


Q ss_pred             cccCCCCCcccccceeeeeCccccccccccccCEEEccCCccc
Q 037822          432 KVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS  474 (497)
Q Consensus       432 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  474 (497)
                      +.|++++|++... +    ...+.+....+.+..|++.+|+++
T Consensus       391 ~~LdLs~N~L~~L-P----~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLVRL-P----ESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcccC-c----hhHHHHhhcCCCccEEEeeCCCcc
Confidence            6666666665422 1    112233344456666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.5e-19  Score=169.58  Aligned_cols=116  Identities=25%  Similarity=0.312  Sum_probs=62.4

Q ss_pred             ccCCCCCEEECccCcccccC----CcccccccCCcEEEeecceeeee----CCcccccCCCCCEEecCCCcCcccCChhH
Q 037822          305 SNISSLYILDMSNNSLSGEI----PESIGSLLSVRFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPAWI  376 (497)
Q Consensus       305 ~~~~~L~~L~l~~n~i~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  376 (497)
                      ..+++|+.|++++|.+++..    +..+...++|++|++++|.+.+.    +...+..+++|++|++++|.+.+.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            33444555555555444211    11223334555555555554321    22334556677777777777665333333


Q ss_pred             hhhC----CCCCEEEccCccccc----CCCcccCCCCCCCEEEccCCcCcCC
Q 037822          377 GESM----PSLSILRLRSNYFNG----TIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       377 ~~~~----~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      ...+    +.|+.|++++|.+++    .+...+..+++|+++++++|.++..
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            3332    577777777777652    1223445556777777777777744

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.2e-17  Score=170.00  Aligned_cols=204  Identities=22%  Similarity=0.348  Sum_probs=109.7

Q ss_pred             CCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecc
Q 037822          215 FPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN  294 (497)
Q Consensus       215 ~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n  294 (497)
                      +|+.|++++|.+.......+..|+.|++++|.+. .+|..+   ...|+.|++++|++. ..|..+.  ++|+.|++++|
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N  293 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPERL---PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN  293 (754)
T ss_pred             CCCEEECCCCccccCChhhhccccEEECcCCccC-cCChhH---hCCCCEEECcCCccC-ccccccC--CCCcEEECCCC
Confidence            4444444444444322222335666666666655 444443   235666666666665 2333332  45666666666


Q ss_pred             eeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh
Q 037822          295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA  374 (497)
Q Consensus       295 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  374 (497)
                      .++ .+|..+.  ++|+.|++++|.++. .|..+  .++|+.|++++|.++ .+|..+  +++|+.|++++|++. .+|.
T Consensus       294 ~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~  363 (754)
T PRK15370        294 SIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPE  363 (754)
T ss_pred             ccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCCh
Confidence            665 3443322  356666666666652 33222  246666666666665 344433  256677777776665 5554


Q ss_pred             hHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccc----cCCCCCcccCCCCCccc
Q 037822          375 WIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV----GNFSGMKVEPPDSVKYE  442 (497)
Q Consensus       375 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~~~~~  442 (497)
                      .+   +++|+.|++++|+++ .+|..+.  ..|+.|++++|++. .+|..+    ..++.+..+++.+|++.
T Consensus       364 ~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        364 TL---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            33   346667777777666 4444332  25666667777666 444433    23355666666666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.8e-19  Score=170.55  Aligned_cols=104  Identities=26%  Similarity=0.244  Sum_probs=64.4

Q ss_pred             EEEcCCCCCc-ccCCccccCCCCCCEEECCCCcccc----cCCccccCCCCCCEEECcCCcCcc------cCCccCCCCC
Q 037822           21 KLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVG----SIPPSIGNLTFLKELYLSSNQMNG------KFPENFGQLS   89 (497)
Q Consensus        21 ~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~------~~~~~~~~l~   89 (497)
                      .|+|.++.+. ......+..+.+|++|+++++.++.    .++..+...+.|++++++++.+..      ..+..+.+++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3566666665 3334456677778888888887743    245556677778888888877651      2233456677


Q ss_pred             CCCEEEcCCCccccccChhhhhcCCC---CceEeccCcc
Q 037822           90 AVEVLDLSENQWEGIITETHFRNLSN---LKELALNKQS  125 (497)
Q Consensus        90 ~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~l~~~~  125 (497)
                      +|+.|++++|.+.+..+. .+..+..   |++|++++|.
T Consensus        82 ~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          82 GLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             ceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCc
Confidence            888888888777542222 3333333   6666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=7.8e-18  Score=133.31  Aligned_cols=171  Identities=27%  Similarity=0.380  Sum_probs=139.6

Q ss_pred             ccCCCCCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCC
Q 037822            7 IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFG   86 (497)
Q Consensus         7 l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~   86 (497)
                      +..+.++-.+++++.|.+|.|+++ ..|..++.+.+|++|++++|++. .+|..++.+++|+.|++.-|++. ..|..|+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             HhhcccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC
Confidence            344445555568899999999999 55667999999999999999998 78999999999999999999987 8899999


Q ss_pred             CCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCC
Q 037822           87 QLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQT  166 (497)
Q Consensus        87 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~  166 (497)
                      .++-|++||+.+|.+.+......|-.+..|+.|.++.     .....++..++++++|+.|.+.++++. ..|..++.+.
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-----ndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt  173 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-----NDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT  173 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-----CCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence            9999999999999987544334677788888888887     455667888888888888888888765 4677788888


Q ss_pred             CccEEEeeccccccccCchhh
Q 037822          167 ELTTLVLNNVRISDTIPDWFW  187 (497)
Q Consensus       167 ~L~~L~l~~~~~~~~~~~~~~  187 (497)
                      .|++|.+.+|+++ ..|..++
T Consensus       174 ~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  174 RLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             HHHHHhcccceee-ecChhhh
Confidence            8888888888876 4554444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=7e-18  Score=133.59  Aligned_cols=183  Identities=28%  Similarity=0.481  Sum_probs=134.8

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .+..++.|.+++|+++ ..|..++.+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+++|.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4566777778888877 45556777888888888888877 67777888888888888888776 777788888888888


Q ss_pred             Eeecceeee-eCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          338 ILCNNHISG-EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       338 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |+.+|.+.+ ..|..|.++..|+.|.+++|++. .+|..+++ +++|+.|.+++|.+. ..|..++.++.|++|++.+|.
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            888877753 35667777788888888888886 77777776 888888888888877 677788888888888888888


Q ss_pred             CcCCCCccccCCC---CCcccCCCCCccccccee
Q 037822          417 LSGIIPPCVGNFS---GMKVEPPDSVKYEGSLQV  447 (497)
Q Consensus       417 i~~~~~~~l~~l~---~L~~L~l~~~~~~~~~~~  447 (497)
                      ++ .+|..++++.   +-++..+.+|++...+..
T Consensus       185 l~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  185 LT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             ee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            88 4555555443   223345566666554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.29  E-value=4.1e-13  Score=116.42  Aligned_cols=205  Identities=24%  Similarity=0.194  Sum_probs=118.6

Q ss_pred             cccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecc-eeeeeCCcccc
Q 037822          275 SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN-HISGEVPPSLK  353 (497)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~  353 (497)
                      ..+..+..+++|+++.++.|.-. -+-.....-|.|+.+.+.+..+..  ...+....++....-..- -..|.....+.
T Consensus       205 ~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~--~~~l~pe~~~~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  205 RLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD--VPSLLPETILADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             ccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc--cccccchhhhcCccCCCCCccCCceEEecc
Confidence            34455556677777777776643 122222233567777666654431  111211112211111110 01112223344


Q ss_pred             cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcc
Q 037822          354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKV  433 (497)
Q Consensus       354 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  433 (497)
                      .|..|+++|+++|.|+ .+.+..-- .|.++.|+++.|.++ .+ ..+..+++|++||+++|.++ ...++-.++-+.|+
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhh-ccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            5667777777777776 55554432 677777777777776 22 23677777777777777776 34445556666677


Q ss_pred             cCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccC-ChhhhccCCCCeEECCCCCC
Q 037822          434 EPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM-PVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       434 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~l~l~~n~i  497 (497)
                      |.+.+|.+.+..          .++.+-+|..||+++|.|.+.. ..+++++|.|+++.+.+|||
T Consensus       357 L~La~N~iE~LS----------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  357 LKLAQNKIETLS----------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eehhhhhHhhhh----------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            777777663321          1245567777888888886542 45688888888888888875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=1.2e-13  Score=122.36  Aligned_cols=136  Identities=24%  Similarity=0.324  Sum_probs=79.6

Q ss_pred             cCCccEEEeecceeec----ccCcccccCCCCCEEECccCcccccC----CcccccccCCcEEEeecceeeee----CCc
Q 037822          283 LQQLLTLVISNNNLSG----EIPRLWSNISSLYILDMSNNSLSGEI----PESIGSLLSVRFLILCNNHISGE----VPP  350 (497)
Q Consensus       283 l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~  350 (497)
                      .+.|+++....|++..    .+...|...+.|+++.+..|.|....    ..++..+++|++|++.+|.++..    +..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            4556666666665542    12234455566666666666664222    23456667777777777766422    334


Q ss_pred             ccccCCCCCEEecCCCcCcccCChhH----hhhCCCCCEEEccCcccccC----CCcccCCCCCCCEEEccCCcCc
Q 037822          351 SLKNCSMMDSLDLGDNQLSGNIPAWI----GESMPSLSILRLRSNYFNGT----IPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       351 ~~~~~~~L~~L~l~~~~i~~~~~~~~----~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      ++..|++|+.+++++|.+.......+    ....|+|+.+.+.+|.++..    +..++...+.|+.|+|++|.+.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            55667777777777777664443333    23356777777777777641    2223444677777777777773

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=3.8e-13  Score=119.14  Aligned_cols=143  Identities=22%  Similarity=0.243  Sum_probs=87.3

Q ss_pred             cccCcCCccEEEeecceeecccCcc----cccCCCCCEEECccCcccccCC-------------cccccccCCcEEEeec
Q 037822          279 SICNLQQLLTLVISNNNLSGEIPRL----WSNISSLYILDMSNNSLSGEIP-------------ESIGSLLSVRFLILCN  341 (497)
Q Consensus       279 ~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~i~~~~~-------------~~l~~~~~L~~L~l~~  341 (497)
                      ++..++.|+++++|+|-+....+..    ++++..|++|.+.+|.+....-             ....+.+.|+++...+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            3455667888888887766444433    3456778888888887652211             1223456777777777


Q ss_pred             ceeeee----CCcccccCCCCCEEecCCCcCcccCC---hhHhhhCCCCCEEEccCcccccC----CCcccCCCCCCCEE
Q 037822          342 NHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIP---AWIGESMPSLSILRLRSNYFNGT----IPPELCKLPALHIL  410 (497)
Q Consensus       342 ~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L  410 (497)
                      |.+...    +...|..++.|+.+++..|.|.-...   ...+..+++|+.||+.+|-++..    +...+..+++|+++
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            776422    22345666777777777776653222   12233477777777777776632    23445666777777


Q ss_pred             EccCCcCcCCC
Q 037822          411 DLSHNNLSGII  421 (497)
Q Consensus       411 ~l~~n~i~~~~  421 (497)
                      ++++|.+....
T Consensus       247 ~l~dcll~~~G  257 (382)
T KOG1909|consen  247 NLGDCLLENEG  257 (382)
T ss_pred             ccccccccccc
Confidence            77777776553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=4.2e-13  Score=126.08  Aligned_cols=170  Identities=29%  Similarity=0.467  Sum_probs=118.8

Q ss_pred             CCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEcc
Q 037822          310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR  389 (497)
Q Consensus       310 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  389 (497)
                      -...+++.|++. +.|..+..+..|+.+.++.|.+. .+|..+..+..|+.++++.|++. ..|..++.  --|+.|-++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD--LPLKVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc--CcceeEEEe
Confidence            344556666665 55656666666666666666665 56666677777777777777776 66666653  346777777


Q ss_pred             CcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822          390 SNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS  469 (497)
Q Consensus       390 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  469 (497)
                      +|+++ .+|..++....|..|+.+.|.+. .+|..+..+.+|+.|.++.|.+....+..         . .=.|..||+|
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El---------~-~LpLi~lDfS  219 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEEL---------C-SLPLIRLDFS  219 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHH---------h-CCceeeeecc
Confidence            77776 56666777777777777777777 56667777777777777777775544432         2 2346778999


Q ss_pred             CCcccccCChhhhccCCCCeEECCCCCC
Q 037822          470 SNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       470 ~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      .|+++ .+|..|.+|+.|++|.|.+||+
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCC
Confidence            99998 7888899999999999988885

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.4e-12  Score=117.36  Aligned_cols=141  Identities=25%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCC-CccccCCCCCc
Q 037822          354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGII-PPCVGNFSGMK  432 (497)
Q Consensus       354 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~  432 (497)
                      .+++|+.|.+++|.++-.-...+...+|+|+.|++.+|...........-+..|++|+|++|++.+.. ....+.++.|.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            34555555565555543223333334566666666655322122222333445666666666554221 12345555666


Q ss_pred             ccCCCCCcccccceeeeeCccccccccccccCEEEccCCccccc-CChhhhccCCCCeEECCCCC
Q 037822          433 VEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGE-MPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       433 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~l~l~~n~  496 (497)
                      .|+++.+.+.+.-...  +....-...+++|++|+++.|.+.+- ....+..+++|+.+.+..|+
T Consensus       275 ~Lnls~tgi~si~~~d--~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPD--VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hhhccccCcchhcCCC--ccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            6666555553322111  11111124567777788887777421 12345556666666665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.8e-11  Score=119.25  Aligned_cols=195  Identities=30%  Similarity=0.457  Sum_probs=102.8

Q ss_pred             EEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCC-CCCEEECccCcccccCCcccccccCCcEEEeecc
Q 037822          264 DLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN  342 (497)
Q Consensus       264 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~  342 (497)
                      .++...+.+. .....+..++.++.+.+.+|.++ .++....... +|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4555555542 11222333456666666666665 4444444443 6666666666665 33344566666666666666


Q ss_pred             eeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCC
Q 037822          343 HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP  422 (497)
Q Consensus       343 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  422 (497)
                      ++. ..+......+.|+.|++++|++. .+|..+.. +..|+++.+++|++. ..+..+..+.++..+.+.+|++.. .+
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~  248 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP  248 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence            665 34433335566666666666665 55544321 444666666666433 334445556666666666666552 24


Q ss_pred             ccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccccc
Q 037822          423 PCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGE  476 (497)
Q Consensus       423 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  476 (497)
                      ..+..++.++.|++++|.+.....          ++....++.|++++|.++..
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~----------~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS----------LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             chhccccccceecccccccccccc----------ccccCccCEEeccCcccccc
Confidence            445555555555555555432211          23344555555555555433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=3.9e-12  Score=105.80  Aligned_cols=102  Identities=28%  Similarity=0.361  Sum_probs=29.9

Q ss_pred             CccEEEcCCCCCcccCCcccc-CCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccC-CCCCCCCEEE
Q 037822           18 LLEKLELGFNQLNGDLPSSLG-YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENF-GQLSAVEVLD   95 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~   95 (497)
                      ++++|++.+|+|+.+  +.++ .+.+|++|++++|.+...  +.+..+++|++|++++|.++. +...+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            577777777777633  2354 466777777777777643  346667777777777777763 32233 3467777777


Q ss_pred             cCCCccccccChhhhhcCCCCceEeccCc
Q 037822           96 LSENQWEGIITETHFRNLSNLKELALNKQ  124 (497)
Q Consensus        96 l~~n~l~~~~~~~~~~~l~~L~~L~l~~~  124 (497)
                      +++|+|.+.-.-..+..+++|+.|++.+|
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            77777665322234555555555555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=4.8e-11  Score=99.32  Aligned_cols=109  Identities=29%  Similarity=0.416  Sum_probs=36.1

Q ss_pred             CCCCCEEECccCcccccCCcccc-cccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCE
Q 037822          307 ISSLYILDMSNNSLSGEIPESIG-SLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI  385 (497)
Q Consensus       307 ~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~  385 (497)
                      +..+++|++.+|.|+. + +.++ .+.+|+.|++++|.+...  +.+..++.|++|++++|.++ .+...+...+++|+.
T Consensus        18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            4456666777766652 2 2343 356677777777777522  34666777777777777776 555444444777888


Q ss_pred             EEccCcccccC-CCcccCCCCCCCEEEccCCcCcCC
Q 037822          386 LRLRSNYFNGT-IPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       386 L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      |++++|++... ....+..+++|+.|++.+|++...
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            88887777642 124566778888888888887633

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=1.6e-12  Score=122.24  Aligned_cols=193  Identities=27%  Similarity=0.425  Sum_probs=164.8

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      .....+++.|++. .+|..+. .+..|+.+.+..|.+- ..|..++++..|.+++++.|++. ..|..+..++ |+.|.+
T Consensus        76 dt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             chhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            4566788889887 7777763 6788999999999887 67888999999999999999998 7887777775 899999


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      ++|+++ ..|..++..+.|..|+.+.|.+. ..|.-+.++.+|+.|.+..|.+. .+|..++  .-.|.+||+++|++. 
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS-  224 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee-
Confidence            999998 77878888899999999999997 77888999999999999999998 7888776  457999999999998 


Q ss_pred             CCCcccCCCCCCCEEEccCCcCcCCCCccc---cCCCCCcccCCCCCc
Q 037822          396 TIPPELCKLPALHILDLSHNNLSGIIPPCV---GNFSGMKVEPPDSVK  440 (497)
Q Consensus       396 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~l~~~~  440 (497)
                      .+|-.|.++.+|++|-|.+|++. ..|-++   +...-.|+|+...|+
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            78999999999999999999998 555444   455667888888885

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2e-11  Score=111.46  Aligned_cols=191  Identities=19%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             ccCCCCCCccccEEEccCCcCCCCCC-ccccCCCCccEEEeecccccccc-CchhhhcccCccEEEcccccccccCCccc
Q 037822          134 ISSHWIPPFKLTFINIRSCQLGPKFP-TWLRNQTELTTLVLNNVRISDTI-PDWFWQLDLTLDELDVAYNELSGSIPNSL  211 (497)
Q Consensus       134 ~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  211 (497)
                      +.+.-.+..+|+.+.|.+++...... +....|++++.||++.|-+..-. ...++...++|+.|+++.|.+........
T Consensus       113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            33444555667777777766543221 24456677777777776654211 11233333566666666665542111111


Q ss_pred             cccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEe
Q 037822          212 GFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVI  291 (497)
Q Consensus       212 ~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l  291 (497)
                                         ...++.++.|.++.|.++-.--..+...+|.++.|++..|...........-+..|++|++
T Consensus       193 -------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  193 -------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             -------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence                               1123355555555555542222233345555565655555322122222233445555555


Q ss_pred             ecceeecccC--cccccCCCCCEEECccCcccccCCcc------cccccCCcEEEeeccee
Q 037822          292 SNNNLSGEIP--RLWSNISSLYILDMSNNSLSGEIPES------IGSLLSVRFLILCNNHI  344 (497)
Q Consensus       292 ~~n~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~------l~~~~~L~~L~l~~~~~  344 (497)
                      ++|.+. ..+  .....++.|+.|+++.|++.+.....      ...+++|++|++..|++
T Consensus       254 s~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  254 SNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             cCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            555544 122  23344555555555555554321111      12344555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.8e-10  Score=112.14  Aligned_cols=198  Identities=28%  Similarity=0.435  Sum_probs=136.5

Q ss_pred             eEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcC-CccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822          239 KLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQ-QLLTLVISNNNLSGEIPRLWSNISSLYILDMSN  317 (497)
Q Consensus       239 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  317 (497)
                      .+....+.+.......  ...+.++.+++.++.+. ..+....... +|+.|++++|.+. ..+..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~~--~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISEL--LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhh--hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            4666666553222221  24567888888888887 3444445553 7888888888877 5555677788888888888


Q ss_pred             CcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC
Q 037822          318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI  397 (497)
Q Consensus       318 n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  397 (497)
                      |++. ..+...+..+.|+.|++++|.+. .+|........|+++.+++|.+. ..+..+.. +.++..+.+.+|++. ..
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~-~~  247 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLE-DL  247 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceee-ec
Confidence            8887 44544446788888888888887 55655555666888888888544 44444443 677777778888776 33


Q ss_pred             CcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccccccee
Q 037822          398 PPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQV  447 (497)
Q Consensus       398 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  447 (497)
                      +..+..++.++.|++++|+++....  +..+.+++.|+++++......+.
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            5667778888888888888884433  78888888888888877655444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=2e-10  Score=119.61  Aligned_cols=104  Identities=30%  Similarity=0.331  Sum_probs=48.9

Q ss_pred             CccEEEcCCCC--CcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEE
Q 037822           18 LLEKLELGFNQ--LNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLD   95 (497)
Q Consensus        18 ~L~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   95 (497)
                      .|+.|-+.++.  +.......|..++.|++||+++|.-.+.+|+.++.+-+||+|+++++.+. .+|..+.++.+|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            34444444443  23222233455555555555554433345555555555555555555555 4555555555555555


Q ss_pred             cCCCccccccChhhhhcCCCCceEeccC
Q 037822           96 LSENQWEGIITETHFRNLSNLKELALNK  123 (497)
Q Consensus        96 l~~n~l~~~~~~~~~~~l~~L~~L~l~~  123 (497)
                      +.++.-...++ .....+.+||+|.+..
T Consensus       625 l~~~~~l~~~~-~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIP-GILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccc-chhhhcccccEEEeec
Confidence            55444222121 2344455555555433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=3.1e-10  Score=77.65  Aligned_cols=61  Identities=36%  Similarity=0.450  Sum_probs=41.8

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcC
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQM   77 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~   77 (497)
                      |+|++|++++|+++...+..|..+++|++|++++|.+....|.+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777766666677777777777777777666666677777777777776653

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=2.1e-10  Score=99.86  Aligned_cols=130  Identities=28%  Similarity=0.354  Sum_probs=78.0

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      ..+.|+++|+++|.|+ ...++..-.|.++.|++++|.+.. .. .++.+++|+.||+++|.++ .....-..+-++++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3455666777777666 333445556677777777777652 22 2566677777777777665 333333445666777


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccC-ChhHhhhCCCCCEEEccCcccc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI-PAWIGESMPSLSILRLRSNYFN  394 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~~L~~L~l~~n~~~  394 (497)
                      .+++|.+.  ..+.+.++-+|..||+++|+|...- ...++. +|-|+.+.+.+|.+.
T Consensus       358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNPLA  412 (490)
T ss_pred             ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCCcc
Confidence            77777664  2345566667777777777665211 223443 667777777777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=8.2e-10  Score=75.52  Aligned_cols=61  Identities=36%  Similarity=0.487  Sum_probs=48.8

Q ss_pred             CCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCcc
Q 037822           41 KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQW  101 (497)
Q Consensus        41 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  101 (497)
                      ++|++|++++|++....+.+|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888766667788888888888888888877777788888888888888764

...

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=2.6e-09  Score=109.05  Aligned_cols=105  Identities=32%  Similarity=0.569  Sum_probs=85.1

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++..|..+.++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788888888888888888888999999999988888888888888999999999998888888888888899999999


Q ss_pred             CCccccccChhhhhc-CCCCceEeccC
Q 037822           98 ENQWEGIITETHFRN-LSNLKELALNK  123 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~-l~~L~~L~l~~  123 (497)
                      +|.+.+.+|. .+.. ..++..+++.+
T Consensus       499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        499 GNSLSGRVPA-ALGGRLLHRASFNFTD  524 (623)
T ss_pred             CCcccccCCh-HHhhccccCceEEecC
Confidence            8888877776 3433 34455555555

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=4.5e-09  Score=107.26  Aligned_cols=112  Identities=31%  Similarity=0.477  Sum_probs=94.8

Q ss_pred             CCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEc
Q 037822          309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL  388 (497)
Q Consensus       309 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l  388 (497)
                      .++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEEC
Confidence            3778899999998888888889999999999999998888888899999999999999998888887776 899999999


Q ss_pred             cCcccccCCCcccCCC-CCCCEEEccCCcCcCCC
Q 037822          389 RSNYFNGTIPPELCKL-PALHILDLSHNNLSGII  421 (497)
Q Consensus       389 ~~n~~~~~~~~~l~~l-~~L~~L~l~~n~i~~~~  421 (497)
                      ++|.+++.+|..+... .++..+++.+|......
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCC
Confidence            9999998888877653 46778888888755433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.74  E-value=1e-08  Score=107.04  Aligned_cols=266  Identities=21%  Similarity=0.199  Sum_probs=174.9

Q ss_pred             ccCCCEEEccCCccccCCCC-CccccceEecccCcc-cccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEE
Q 037822          213 FRFPATVDLSSNSFEGPLPL-WSFNVTKLYLRDNSF-SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLV  290 (497)
Q Consensus       213 ~~~l~~l~l~~~~~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~  290 (497)
                      ....+.+.+.++.+...... ..+.++.|-+..|.. ...++..++..+|.|+.||+++|.-.+..|..++.+-+|++|+
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            34455566666655433322 344788888888862 3377888888999999999999887778999999999999999


Q ss_pred             eecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceee--eeCCcccccCCCCCEEecCCCcC
Q 037822          291 ISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS--GEVPPSLKNCSMMDSLDLGDNQL  368 (497)
Q Consensus       291 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i  368 (497)
                      +++..+. .+|..+.++..|.+|++..+.-....+.....+++|++|.+......  ......+..+.+|+.+.+.....
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV  680 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence            9999988 89999999999999999988765556666777999999999876522  12233445566666666644432


Q ss_pred             cccCChhHhhhCCCCC----EEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccC------CCCCcccCCCC
Q 037822          369 SGNIPAWIGESMPSLS----ILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN------FSGMKVEPPDS  438 (497)
Q Consensus       369 ~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~------l~~L~~L~l~~  438 (497)
                        .+...+. .++.|+    .+.+.++... ..+..+..+.+|+.|.+.++.+......+...      ++.+..+....
T Consensus       681 --~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~  756 (889)
T KOG4658|consen  681 --LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN  756 (889)
T ss_pred             --HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence              1111111 133333    3333333333 34556788899999999999987543332211      33444445555


Q ss_pred             CcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEEC
Q 037822          439 VKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNL  492 (497)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l  492 (497)
                      |.....         ..|....++|++|.+..+...+.+......+..++.+-+
T Consensus       757 ~~~~r~---------l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~  801 (889)
T KOG4658|consen  757 CHMLRD---------LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL  801 (889)
T ss_pred             cccccc---------cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEe
Confidence            544322         233456789999999988776666555555655554333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3e-10  Score=98.78  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=109.0

Q ss_pred             CCCEEECCCCccccc-CCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCc-cccccChhhhhcCCCCceE
Q 037822           42 NLRYLELWHNSFVGS-IPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQ-WEGIITETHFRNLSNLKEL  119 (497)
Q Consensus        42 ~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L  119 (497)
                      .|+++|++...++.. +-.-++.+.+|+.|.+.++++.+.+...+++..+|+.|+++.+. ++.......+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588999998877632 22335678899999999999988888889999999999999865 4443333478899999999


Q ss_pred             eccCccccceeeecccCCCCCCccccEEEccCCcCCC---CCCccccCCCCccEEEeecccc-ccccCchhhhcccCccE
Q 037822          120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP---KFPTWLRNQTELTTLVLNNVRI-SDTIPDWFWQLDLTLDE  195 (497)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~  195 (497)
                      ++++|.........+...+.+  +|+.|+++|++-.-   .+.--.+++|+|.+||++++.. +......+.++ +.|++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise--~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~  342 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISE--TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQH  342 (419)
T ss_pred             CchHhhccchhhhHHHhhhch--hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-chhee
Confidence            999976443333333333333  78888888885331   2222345788999999988753 33333344444 47888


Q ss_pred             EEccccc
Q 037822          196 LDVAYNE  202 (497)
Q Consensus       196 L~l~~~~  202 (497)
                      +.++.|-
T Consensus       343 lSlsRCY  349 (419)
T KOG2120|consen  343 LSLSRCY  349 (419)
T ss_pred             eehhhhc
Confidence            8887774

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=3.3e-09  Score=103.46  Aligned_cols=212  Identities=25%  Similarity=0.198  Sum_probs=92.3

Q ss_pred             CCCEEEccCCccccCC--CCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEee
Q 037822          215 FPATVDLSSNSFEGPL--PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS  292 (497)
Q Consensus       215 ~l~~l~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  292 (497)
                      .++.+.+..|.+....  ...+.+++.+++.+|.+..... . ...+++|++|++++|.|+..  ..+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-L-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-c-hhhhhcchheeccccccccc--cchhhccchhhheec
Confidence            3344444444444311  1233455555555555542211 0 12455555555555555422  223344445555555


Q ss_pred             cceeecccCcccccCCCCCEEECccCcccccCC-cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCccc
Q 037822          293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP-ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGN  371 (497)
Q Consensus       293 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  371 (497)
                      +|.+.  ....+..++.|+.+++++|++..... . ...+.+++.+.+.+|.+..  ...+..+..+..+++..|.+...
T Consensus       149 ~N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  149 GNLIS--DISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             cCcch--hccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceec
Confidence            55554  11233335555555555555542222 1 3444555555555555431  12233333333334444444311


Q ss_pred             CChhHhhhCC--CCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcc
Q 037822          372 IPAWIGESMP--SLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKY  441 (497)
Q Consensus       372 ~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~  441 (497)
                      -+..  . +.  .|+.+++.+|++. ..+..+..+..+..+++.+|++...  ..+.....+..+..+.+++
T Consensus       224 ~~l~--~-~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  224 EGLN--E-LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL  289 (414)
T ss_pred             cCcc--c-chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence            1100  0 11  1555666666555 2223445555556666666555522  1233333444444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.62  E-value=9.5e-10  Score=106.84  Aligned_cols=178  Identities=25%  Similarity=0.234  Sum_probs=122.4

Q ss_pred             CcccccCCCCCEEECccCcccccCCcccccc-cCCcEEEeecceee----------eeCCcccccCCCCCEEecCCCcCc
Q 037822          301 PRLWSNISSLYILDMSNNSLSGEIPESIGSL-LSVRFLILCNNHIS----------GEVPPSLKNCSMMDSLDLGDNQLS  369 (497)
Q Consensus       301 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~i~  369 (497)
                      |-.+..+.+|+.|.+.+|.+.. . ..+..+ ..|++|... +.+.          +.+..+ ..+.+|.+.+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH
Confidence            3344567899999999998873 1 112111 234444322 1111          111111 12567888888899876


Q ss_pred             ccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeee
Q 037822          370 GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVL  449 (497)
Q Consensus       370 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  449 (497)
                       .+...+- .++.++.|++++|+++..  ..+..+++|++|||++|.+....--....|+ |..|.+++|.+.+..-   
T Consensus       178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g---  249 (1096)
T KOG1859|consen  178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG---  249 (1096)
T ss_pred             -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh---
Confidence             5544443 378999999999999854  4788999999999999999854434556666 9999999998765433   


Q ss_pred             eCccccccccccccCEEEccCCccccc-CChhhhccCCCCeEECCCCCC
Q 037822          450 KGSEYVFYTTLYLVNLMDLSSNNLSGE-MPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       450 ~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~l~l~~n~i  497 (497)
                             +.++.+|+-||+++|-+.+- .-.-++.|..|+.|.|.|||+
T Consensus       250 -------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 -------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence                   36788999999999977532 112377889999999999986

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=4.2e-09  Score=102.76  Aligned_cols=240  Identities=25%  Similarity=0.231  Sum_probs=150.6

Q ss_pred             ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEE
Q 037822          234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYIL  313 (497)
Q Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  313 (497)
                      +..++.+.++.|.+.. + ..-...+..++.+++.+|.+... ...+..+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-h-hcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            4466667777776652 1 12124677888888888888632 22266778888888888888732  345666778888


Q ss_pred             ECccCcccccCCcccccccCCcEEEeecceeeeeCC-cccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcc
Q 037822          314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP-PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY  392 (497)
Q Consensus       314 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~  392 (497)
                      ++++|.|..  ...+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+. .+...-.  +..+..+++..|.
T Consensus       146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~~~~--~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEGLDL--LKKLVLLSLLDNK  219 (414)
T ss_pred             eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccchHH--HHHHHHhhccccc
Confidence            888888863  2345557888888888888764333 1 467788888888888776 3322111  3344445777777


Q ss_pred             cccCCCcccCCCCC--CCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccC
Q 037822          393 FNGTIPPELCKLPA--LHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSS  470 (497)
Q Consensus       393 ~~~~~~~~l~~l~~--L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  470 (497)
                      ++..  ..+..+..  |+.+++++|.+. ..++.+..+..+..|++..+++......          ...+.+..+....
T Consensus       220 i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~----------~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  220 ISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGL----------ERLPKLSELWLND  286 (414)
T ss_pred             ceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccc----------cccchHHHhccCc
Confidence            7632  22333333  788888888887 3345677777888888777776433221          3344555566666


Q ss_pred             Cccccc---CC-hhhhccCCCCeEECCCCCC
Q 037822          471 NNLSGE---MP-VELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       471 n~~~~~---~~-~~l~~l~~L~~l~l~~n~i  497 (497)
                      +.+...   .. ......+.++.+.+.+|++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  287 NKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             chhcchhhhhccccccccccccccccccCcc
Confidence            665421   11 1145667777777777763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=9.2e-10  Score=95.83  Aligned_cols=178  Identities=21%  Similarity=0.173  Sum_probs=114.5

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecc--cCcccccCCCCCEE
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE--IPRLWSNISSLYIL  313 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L  313 (497)
                      .++.++++...++......+.+.+.+|+.|.+.++++.+.....++.-.+|+.++++.+.-...  ....+++++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5777888877776444445556788888888888888777777777888888888887753211  22345778888888


Q ss_pred             ECccCcccccCCccc-c-cccCCcEEEeecceee---eeCCcccccCCCCCEEecCCCc-CcccCChhHhhhCCCCCEEE
Q 037822          314 DMSNNSLSGEIPESI-G-SLLSVRFLILCNNHIS---GEVPPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGESMPSLSILR  387 (497)
Q Consensus       314 ~l~~n~i~~~~~~~l-~-~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~  387 (497)
                      +++.|.+......+. . --++|+.|+++|+.-.   ..+..-...||+|.+||+++|. +++...+.+++ ++.|+.|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeee
Confidence            888887664332211 1 1357788888876421   1111223568888888888873 44434444554 77888888


Q ss_pred             ccCcccccCCCc---ccCCCCCCCEEEccCCc
Q 037822          388 LRSNYFNGTIPP---ELCKLPALHILDLSHNN  416 (497)
Q Consensus       388 l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~  416 (497)
                      ++.|-..  +|.   .+...|.|.+|++.++-
T Consensus       345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            8877542  232   34566777788776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.5e-08  Score=88.49  Aligned_cols=209  Identities=16%  Similarity=0.173  Sum_probs=117.1

Q ss_pred             hhcCCCCccEEEcccCccee--cccccccCcCCccEEEeecceeecccCccc-ccCCCCCEEECccCcccc-cCCccccc
Q 037822          255 FGQKIPFLTDLDISFNSLNG--SVSKSICNLQQLLTLVISNNNLSGEIPRLW-SNISSLYILDMSNNSLSG-EIPESIGS  330 (497)
Q Consensus       255 ~~~~~~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~~-~~~~~l~~  330 (497)
                      +...++.++++|+.+|.+.+  .....+.++|.|++|+++.|.+.. ....+ ....+|+.|.+.+..+.- .....+..
T Consensus        66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            33556777888888887763  333455677888888888877662 22222 245677777777776541 12234556


Q ss_pred             ccCCcEEEeecceeeee--CCcccc-cCCCCCEEecCCCcCcccCCh--hHhhhCCCCCEEEccCcccccC-CCcccCCC
Q 037822          331 LLSVRFLILCNNHISGE--VPPSLK-NCSMMDSLDLGDNQLSGNIPA--WIGESMPSLSILRLRSNYFNGT-IPPELCKL  404 (497)
Q Consensus       331 ~~~L~~L~l~~~~~~~~--~~~~~~-~~~~L~~L~l~~~~i~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l  404 (497)
                      +|.+++|+++.|.....  ...... .-+.+.+++...|... ....  .+..-+|++..+.+..|.+.+. ....+..+
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            67777777777744311  111111 2246666666666543 1111  2233367777777777766542 22455666


Q ss_pred             CCCCEEEccCCcCcCC-CCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEE
Q 037822          405 PALHILDLSHNNLSGI-IPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMD  467 (497)
Q Consensus       405 ~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  467 (497)
                      +.+-.|+|+.++|..- ..+.+..++.+..|.++++++......  .......++.+++++.|+
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEEec
Confidence            7777777877777522 123455666666666666665544433  222233344455555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.40  E-value=4.6e-09  Score=95.83  Aligned_cols=61  Identities=26%  Similarity=0.258  Sum_probs=33.2

Q ss_pred             ccceEecccCc-ccccCChhhhcCCCCccEEEcccCcceec--ccccccCcCCccEEEeeccee
Q 037822          236 NVTKLYLRDNS-FSGPIPRDFGQKIPFLTDLDISFNSLNGS--VSKSICNLQQLLTLVISNNNL  296 (497)
Q Consensus       236 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n~~  296 (497)
                      +|+.+.+.+|+ +++.....+....+.|+.+++.++.....  ....-.+++.|+++.+++|..
T Consensus       321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL  384 (483)
T ss_pred             ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence            45555555542 33333344445677777777777654321  222233466777777776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=6.2e-08  Score=84.64  Aligned_cols=38  Identities=29%  Similarity=0.286  Sum_probs=25.5

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcce
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN  273 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  273 (497)
                      .+.-|+++.+++..+...+....++.|..|.++++++.
T Consensus       225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            34455666666665555555567888888888888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=5.9e-09  Score=101.47  Aligned_cols=128  Identities=23%  Similarity=0.205  Sum_probs=97.0

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .|...+.++|.++ ...+++.-+++|+.|+|++|++...  +.+..+++|++||+++|.+..........+. |+.|+++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            5778889999888 6667888899999999999999855  3788999999999999998843333445555 9999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCC
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLG  155 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  155 (497)
                      +|.+++.   ..++++++|+.|+++.|-+.   ......-+..+..|+.|+|.+|++-
T Consensus       241 nN~l~tL---~gie~LksL~~LDlsyNll~---~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL---RGIENLKSLYGLDLSYNLLS---EHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh---hhHHhhhhhhccchhHhhhh---cchhhhHHHHHHHHHHHhhcCCccc
Confidence            9998764   36888999999999885322   2222223344557888888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.31  E-value=4.7e-08  Score=84.26  Aligned_cols=134  Identities=21%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             CCccEEEeecceeecccC-----cccccCCCCCEEECccCcccccCCc-----ccccccCCcEEEeecceeeee----CC
Q 037822          284 QQLLTLVISNNNLSGEIP-----RLWSNISSLYILDMSNNSLSGEIPE-----SIGSLLSVRFLILCNNHISGE----VP  349 (497)
Q Consensus       284 ~~L~~L~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~-----~l~~~~~L~~L~l~~~~~~~~----~~  349 (497)
                      |.|+++.+..|++. ..+     ..+..-..|+++.+.+|.|......     .+..+.+|+.|++.+|.++-.    ..
T Consensus       157 p~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         157 PKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            55666666666554 111     1122224566666666655422111     123355666666666665421    22


Q ss_pred             cccccCCCCCEEecCCCcCcccCChhHhh-----hCCCCCEEEccCcccccCCCcc-----c--CCCCCCCEEEccCCcC
Q 037822          350 PSLKNCSMMDSLDLGDNQLSGNIPAWIGE-----SMPSLSILRLRSNYFNGTIPPE-----L--CKLPALHILDLSHNNL  417 (497)
Q Consensus       350 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~-----l--~~l~~L~~L~l~~n~i  417 (497)
                      ..+..|+.|+.|++.+|-+.......++.     ..|+|..|-...|...+.+...     +  ..+|-|..|.+.+|.|
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            33445566666666666555433333222     1356666666666544321111     1  2455566666666766


Q ss_pred             c
Q 037822          418 S  418 (497)
Q Consensus       418 ~  418 (497)
                      .
T Consensus       316 ~  316 (388)
T COG5238         316 K  316 (388)
T ss_pred             h
Confidence            5

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.27  E-value=8.7e-09  Score=94.03  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=40.8

Q ss_pred             cccEEEccCCcCCCC--CCccccCCCCccEEEeeccc-cccccCchhhhcccCccEEEccccc
Q 037822          143 KLTFINIRSCQLGPK--FPTWLRNQTELTTLVLNNVR-ISDTIPDWFWQLDLTLDELDVAYNE  202 (497)
Q Consensus       143 ~L~~l~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~  202 (497)
                      .|+.+.+.+++-...  .......+|+++.|.+.++. +++..-..+...+++++++++..|.
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~  201 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS  201 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc
Confidence            678888888764432  22344578888888888875 4445555666777788888887764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=1.1e-07  Score=82.03  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=23.8

Q ss_pred             CCCCCCccccEEEccCCcCCCCCCcc----ccCCCCccEEEeecccc
Q 037822          136 SHWIPPFKLTFINIRSCQLGPKFPTW----LRNQTELTTLVLNNVRI  178 (497)
Q Consensus       136 ~~~~~~~~L~~l~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~  178 (497)
                      +++.+|++|+.++|++|.++...|+.    ++.-..|++|.+.+|.+
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            34455666666666666655544433    33445566666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.20  E-value=2.5e-06  Score=70.65  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=70.8

Q ss_pred             ccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCC
Q 037822           19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE   98 (497)
Q Consensus        19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   98 (497)
                      =+.+++.+.++..+. .-=........+|+++|.+...  ..|..++.|.+|.+++|+|+...|.--..+++|++|.+.+
T Consensus        21 e~e~~LR~lkip~ie-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIE-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchh-hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            456777777765221 1112345677888888887633  4577888899999999998876666556678899999999


Q ss_pred             CccccccChhhhhcCCCCceEeccCc
Q 037822           99 NQWEGIITETHFRNLSNLKELALNKQ  124 (497)
Q Consensus        99 n~l~~~~~~~~~~~l~~L~~L~l~~~  124 (497)
                      |.|...-.-.-+..|+.|++|.+-+|
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCC
Confidence            88875433344566667777666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.03  E-value=2.2e-07  Score=71.73  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=13.5

Q ss_pred             CCCEEECccCcccccCCcccccccCCcEEEeeccee
Q 037822          309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI  344 (497)
Q Consensus       309 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~  344 (497)
                      .++.+++++|.|. ..|..+..++.|+.|++..|++
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcc
Confidence            3344444444443 2222233334444444444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.01  E-value=2.2e-05  Score=74.01  Aligned_cols=134  Identities=22%  Similarity=0.216  Sum_probs=72.6

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccC-cccccCCcccccccCCcE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNN-SLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~L~~  336 (497)
                      .++++++|++++|.++ ..|.   -.++|++|.+++|.-....|..+  .++|+.|++++| .+. ..|      ++|+.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccce
Confidence            4577888888888766 3341   23468888887755433555544  357788888777 433 222      35666


Q ss_pred             EEeecceeeeeCCcccccC-CCCCEEecCCCc-Cc-ccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEcc
Q 037822          337 LILCNNHISGEVPPSLKNC-SMMDSLDLGDNQ-LS-GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS  413 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-i~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  413 (497)
                      |++.++... .    +..+ ++|+.|.+.++. .. ..++..   -+++|+.|++++|... ..|..+  ..+|+.|.++
T Consensus       117 L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls  185 (426)
T PRK15386        117 LEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLH  185 (426)
T ss_pred             EEeCCCCCc-c----cccCcchHhheeccccccccccccccc---cCCcccEEEecCCCcc-cCcccc--cccCcEEEec
Confidence            666654432 1    1111 246666664322 11 011111   1356777777777654 333322  2467777776


Q ss_pred             CC
Q 037822          414 HN  415 (497)
Q Consensus       414 ~n  415 (497)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            55

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=5e-06  Score=51.78  Aligned_cols=15  Identities=47%  Similarity=0.518  Sum_probs=5.5

Q ss_pred             ccCCCCCCEEECCCC
Q 037822           37 LGYLKNLRYLELWHN   51 (497)
Q Consensus        37 ~~~l~~L~~L~l~~~   51 (497)
                      ++++++|++|++++|
T Consensus        20 l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   20 LSNLPNLETLNLSNN   34 (44)
T ss_dssp             GTTCTTSSEEEETSS
T ss_pred             HhCCCCCCEEEecCC
Confidence            333333333333333

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=1.8e-05  Score=65.70  Aligned_cols=104  Identities=17%  Similarity=0.170  Sum_probs=63.2

Q ss_pred             cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC-CCcccCCCCCCCEE
Q 037822          332 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT-IPPELCKLPALHIL  410 (497)
Q Consensus       332 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L  410 (497)
                      .....+|+++|.+.  ....|..++.|.+|.+++|+|+ .+...+...+++|..|.+.+|.+... .-..+..||.|++|
T Consensus        42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            45566677777664  2234666777777777777777 55445555567788888887776521 11345677788888


Q ss_pred             EccCCcCcCCCC---ccccCCCCCcccCCCC
Q 037822          411 DLSHNNLSGIIP---PCVGNFSGMKVEPPDS  438 (497)
Q Consensus       411 ~l~~n~i~~~~~---~~l~~l~~L~~L~l~~  438 (497)
                      .+-+|+++..--   -.+..+++|++|++..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            888887764321   1234444444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=1e-06  Score=89.95  Aligned_cols=121  Identities=14%  Similarity=0.162  Sum_probs=61.9

Q ss_pred             CCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC-CCCccccCCCCCcc
Q 037822          355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG-IIPPCVGNFSGMKV  433 (497)
Q Consensus       355 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~  433 (497)
                      +|+|++|.+++-.+...--..++.++|+|+.||+++++++..  .+++.+++|+.|.+.+=.+.. ..-..+.++++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455555555554432221222333455566666665555522  445555566655555555442 11223455566666


Q ss_pred             cCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCCh
Q 037822          434 EPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV  479 (497)
Q Consensus       434 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  479 (497)
                      ||+|.-+........  ......-..+|.|+.||.|++.+.+..-+
T Consensus       225 LDIS~~~~~~~~~ii--~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  225 LDISRDKNNDDTKII--EQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             eeccccccccchHHH--HHHHHhcccCccccEEecCCcchhHHHHH
Confidence            666555544333100  00111224588999999999988766544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=7.7e-06  Score=50.96  Aligned_cols=36  Identities=39%  Similarity=0.626  Sum_probs=16.3

Q ss_pred             CCCEEECCCCcccccCCccccCCCCCCEEECcCCcCc
Q 037822           42 NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN   78 (497)
Q Consensus        42 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~   78 (497)
                      +|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 23333455555555555555444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=3.6e-07  Score=70.57  Aligned_cols=104  Identities=27%  Similarity=0.413  Sum_probs=50.5

Q ss_pred             CCEEECccCcccccCCc---ccccccCCcEEEeecceeeeeCCccc-ccCCCCCEEecCCCcCcccCChhHhhhCCCCCE
Q 037822          310 LYILDMSNNSLSGEIPE---SIGSLLSVRFLILCNNHISGEVPPSL-KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI  385 (497)
Q Consensus       310 L~~L~l~~n~i~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~  385 (497)
                      +..++++.|++. -+++   .+.....|+..++++|.+. .+|..| ..++.++++++++|.+. .+|..+.. ++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhh
Confidence            444555555543 1221   2223334455555555554 333333 23445555555555555 55555433 555555


Q ss_pred             EEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822          386 LRLRSNYFNGTIPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       386 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      |+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            555555555 34444444555555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=4.7e-06  Score=85.18  Aligned_cols=153  Identities=21%  Similarity=0.237  Sum_probs=89.9

Q ss_pred             ccceEecccCc-ccccCChhhhcCCCCccEEEcccCcceec-ccccccCcCCccEEEeecceeecccCcccccCCCCCEE
Q 037822          236 NVTKLYLRDNS-FSGPIPRDFGQKIPFLTDLDISFNSLNGS-VSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYIL  313 (497)
Q Consensus       236 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  313 (497)
                      +|+.|++++.. +....+..++..+|.|++|.+.+-.+... ......++|+|..|++|+.+++..  .+++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            56666665542 22234445556677777777777655422 223445677777777777776622  556777777777


Q ss_pred             ECccCcccc-cCCcccccccCCcEEEeecceeeeeC------CcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEE
Q 037822          314 DMSNNSLSG-EIPESIGSLLSVRFLILCNNHISGEV------PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSIL  386 (497)
Q Consensus       314 ~l~~n~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  386 (497)
                      .+.+=.+.. ..-..+..+++|+.||++........      .+.-..+|.|+.||.++..+.+.+.+.+...-++|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            776655542 11234556777777777765443111      11223467777777777777766666555555666666


Q ss_pred             EccC
Q 037822          387 RLRS  390 (497)
Q Consensus       387 ~l~~  390 (497)
                      ..-+
T Consensus       281 ~~~~  284 (699)
T KOG3665|consen  281 AALD  284 (699)
T ss_pred             hhhh
Confidence            5544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.77  E-value=7.1e-05  Score=60.08  Aligned_cols=121  Identities=16%  Similarity=0.227  Sum_probs=38.1

Q ss_pred             cccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCC
Q 037822          304 WSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSL  383 (497)
Q Consensus       304 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L  383 (497)
                      |.++++|+.+.+.. .+......+|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+. .++...+..++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence            33444444444432 233233334444444444444432 2222233444444455555433 222 2333333334555


Q ss_pred             CEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCC
Q 037822          384 SILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGM  431 (497)
Q Consensus       384 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L  431 (497)
                      +.+.+..+ +.......|..+ +|+.+.+.. .+..+....|.+|++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555433 221222344554 566665554 3333444455555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.75  E-value=0.00011  Score=58.98  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=28.0

Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      ..+++|+.+.+.. .+......+|.++++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++++.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            3444455555443 233333444444445555554442 2222333344444444444433 222222333444444444


Q ss_pred             EEee
Q 037822          337 LILC  340 (497)
Q Consensus       337 L~l~  340 (497)
                      +.+.
T Consensus        86 i~~~   89 (129)
T PF13306_consen   86 IDIP   89 (129)
T ss_dssp             EEET
T ss_pred             cccC
Confidence            4443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.71  E-value=1.8e-05  Score=68.57  Aligned_cols=102  Identities=26%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCC--cccccCCccccCCCCCCEEECcCCcCcc-cCCccCCCCCCCCEE
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHN--SFVGSIPPSIGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVL   94 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L   94 (497)
                      .|..+++.+..++..  ..|..+++|++|.++.|  .+...++-....+|+|+++++++|++.. .....+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            444555555554422  23555556666666655  3332233233344566666666665542 111123444555555


Q ss_pred             EcCCCccccc--cChhhhhcCCCCceEec
Q 037822           95 DLSENQWEGI--ITETHFRNLSNLKELAL  121 (497)
Q Consensus        95 ~l~~n~l~~~--~~~~~~~~l~~L~~L~l  121 (497)
                      ++..|..+..  .....|..+++|++|+-
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccc
Confidence            5555554331  11134555555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.55  E-value=0.00021  Score=67.59  Aligned_cols=84  Identities=13%  Similarity=0.177  Sum_probs=57.9

Q ss_pred             cccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCc-ccccCCCcccCCCCC
Q 037822          328 IGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN-YFNGTIPPELCKLPA  406 (497)
Q Consensus       328 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~  406 (497)
                      +..+..++.|++++|.++ .+|.   -.++|++|.+++|.-...+|..+   +++|+.|++++| .+. .+|      +.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence            445689999999999887 5552   23479999999975444667644   468999999999 443 444      35


Q ss_pred             CCEEEccCCcCc--CCCCccc
Q 037822          407 LHILDLSHNNLS--GIIPPCV  425 (497)
Q Consensus       407 L~~L~l~~n~i~--~~~~~~l  425 (497)
                      |+.|+++.+...  ..+|..+
T Consensus       114 Le~L~L~~n~~~~L~~LPssL  134 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNGL  134 (426)
T ss_pred             cceEEeCCCCCcccccCcchH
Confidence            777787766542  2455444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=2.3e-06  Score=74.37  Aligned_cols=105  Identities=29%  Similarity=0.262  Sum_probs=79.9

Q ss_pred             CCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccC-CccCCCCCC
Q 037822           12 ECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKF-PENFGQLSA   90 (497)
Q Consensus        12 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~   90 (497)
                      +|+.+.+.++|++.||.+.++  .....++-|++|.|+-|+|+..  ..+..+++|++|+|+.|.|.+.. .+.+.++++
T Consensus        14 K~sdl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   14 KCSDLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HhhHHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            355566889999999999855  4467899999999999999854  45788999999999999987421 134688899


Q ss_pred             CCEEEcCCCccccccC----hhhhhcCCCCceEe
Q 037822           91 VEVLDLSENQWEGIIT----ETHFRNLSNLKELA  120 (497)
Q Consensus        91 L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~  120 (497)
                      |++|.+..|.=.+...    ..++.-+|+|++|+
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999998886433221    23677888888886

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.39  E-value=5.5e-05  Score=65.66  Aligned_cols=90  Identities=26%  Similarity=0.285  Sum_probs=63.2

Q ss_pred             CCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCC--cCcccCCccCCCCCCCCEEEcCCCccccccChhhh
Q 037822           33 LPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSN--QMNGKFPENFGQLSAVEVLDLSENQWEGIITETHF  110 (497)
Q Consensus        33 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  110 (497)
                      +..-...+..|+.|++.+..++..  ..+..+++|++|.++.|  .+...++.-...+++|++|++++|++...-....+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            344456677888888888877643  35678999999999999  56655554556679999999999998742212234


Q ss_pred             hcCCCCceEeccCc
Q 037822          111 RNLSNLKELALNKQ  124 (497)
Q Consensus       111 ~~l~~L~~L~l~~~  124 (497)
                      ..+.+|..|++.+|
T Consensus       113 ~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen  113 KELENLKSLDLFNC  126 (260)
T ss_pred             hhhcchhhhhcccC
Confidence            55556666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.32  E-value=2.6e-05  Score=78.35  Aligned_cols=15  Identities=33%  Similarity=0.237  Sum_probs=8.3

Q ss_pred             CCCCCCCEEEccCCc
Q 037822          402 CKLPALHILDLSHNN  416 (497)
Q Consensus       402 ~~l~~L~~L~l~~n~  416 (497)
                      ..+++++.+.+.++.
T Consensus       359 ~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCcchhhhhhhh
Confidence            445555555555555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.23  E-value=2.7e-05  Score=78.27  Aligned_cols=229  Identities=19%  Similarity=0.102  Sum_probs=92.9

Q ss_pred             CCCCccEEEcccCcceec--ccccccCcCCccEEEeecc-eeeccc----CcccccCCCCCEEECccCc-ccccCCcccc
Q 037822          258 KIPFLTDLDISFNSLNGS--VSKSICNLQQLLTLVISNN-NLSGEI----PRLWSNISSLYILDMSNNS-LSGEIPESIG  329 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~----~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~  329 (497)
                      ..+.++.+.+..+.-...  .......++.|+.|+++++ ......    ......+.+|+.++++++. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            456666666666532222  2233445566666666552 111000    1122334555555555554 3322222222


Q ss_pred             c-ccCCcEEEeecce-eeeeC-CcccccCCCCCEEecCCCcCc-ccCChhHhhhCCCCCEEEccCcccccCCCcccCCCC
Q 037822          330 S-LLSVRFLILCNNH-ISGEV-PPSLKNCSMMDSLDLGDNQLS-GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLP  405 (497)
Q Consensus       330 ~-~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  405 (497)
                      . +++|++|.+.+|. ++... ......++.|++|++++|... +.....+...+++++.+.+.+..          .+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence            1 4455555544443 22111 112233444555555554321 22122222234444443332211          133


Q ss_pred             CCCEEEccCCcCc---CCCCccccCCCCCcccCCCCCcccccce-eeeeCcccc------ccccccccCEEEccCCcc-c
Q 037822          406 ALHILDLSHNNLS---GIIPPCVGNFSGMKVEPPDSVKYEGSLQ-VVLKGSEYV------FYTTLYLVNLMDLSSNNL-S  474 (497)
Q Consensus       406 ~L~~L~l~~n~i~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~------~~~~~~~L~~L~l~~n~~-~  474 (497)
                      .++.+.+.+..-.   ....-.+..++.++.+.+..+....... ....+-...      .......++.|+++.+.. +
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t  415 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT  415 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence            3333333333221   1122235677777777777776332221 111111100      111111256666666643 3


Q ss_pred             ccCChhhhc-cCCCCeEECCCCC
Q 037822          475 GEMPVELTR-LIHLGTLNLSRNH  496 (497)
Q Consensus       475 ~~~~~~l~~-l~~L~~l~l~~n~  496 (497)
                      ...-..... +..++.+++++++
T Consensus       416 ~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  416 DKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             ccchHHHhhhhhccccCCccCcc
Confidence            333333333 5556666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.83  E-value=3.8e-05  Score=67.02  Aligned_cols=101  Identities=22%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             cCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeC-CcccccCCCCCEE
Q 037822          283 LQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV-PPSLKNCSMMDSL  361 (497)
Q Consensus       283 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L  361 (497)
                      +.++++|++++|.+..  ......++.|++|.++-|.|+...  .+..|++|++|.|..|.|.... ...+.++|+|++|
T Consensus        18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            4567788888887762  234566788888888888876433  3677778888888887775221 1245667777777


Q ss_pred             ecCCCcCcccCCh----hHhhhCCCCCEEE
Q 037822          362 DLGDNQLSGNIPA----WIGESMPSLSILR  387 (497)
Q Consensus       362 ~l~~~~i~~~~~~----~~~~~~~~L~~L~  387 (497)
                      -+..|+-.+..+.    .+...+|+|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777765544433    2233366666665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.51  E-value=0.0066  Score=31.22  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=16.8

Q ss_pred             ccCEEEccCCcccccCChhhhcc
Q 037822          462 LVNLMDLSSNNLSGEMPVELTRL  484 (497)
Q Consensus       462 ~L~~L~l~~n~~~~~~~~~l~~l  484 (497)
                      +|+.||+++|.++ .+|..|.+|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4789999999999 666667653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.83  E-value=0.0016  Score=54.40  Aligned_cols=33  Identities=30%  Similarity=0.286  Sum_probs=13.9

Q ss_pred             CCEEECccCcccccCCcccccccCCcEEEeecc
Q 037822          310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNN  342 (497)
Q Consensus       310 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~  342 (497)
                      ++.++-+++.|..+.-+.+..+++++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            444444444444333333344444444444433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.30  E-value=0.0052  Score=51.49  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=27.7

Q ss_pred             ccccCEEEccCC-cccccCChhhhccCCCCeEECCC
Q 037822          460 LYLVNLMDLSSN-NLSGEMPVELTRLIHLGTLNLSR  494 (497)
Q Consensus       460 ~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~l~l~~  494 (497)
                      .++|+.|+|++| .||+..-..+.++++|+.|.|.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            578888999988 77777777788888888887754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.08  E-value=0.00019  Score=70.36  Aligned_cols=88  Identities=24%  Similarity=0.241  Sum_probs=37.5

Q ss_pred             ccCCcEEEeecceeeee----CCcccccCCC-CCEEecCCCcCcccCChhHhhh---C-CCCCEEEccCcccccCC----
Q 037822          331 LLSVRFLILCNNHISGE----VPPSLKNCSM-MDSLDLGDNQLSGNIPAWIGES---M-PSLSILRLRSNYFNGTI----  397 (497)
Q Consensus       331 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~~---~-~~L~~L~l~~n~~~~~~----  397 (497)
                      ..++++|.+.+|.++..    +...+...++ +..++++.|.+.+.........   + ..++.++++.|.++...    
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            34455555555554311    1112222333 4445555555543322222111   1 23455555555555321    


Q ss_pred             CcccCCCCCCCEEEccCCcCc
Q 037822          398 PPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       398 ~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      ...+..++.++++.++.|++.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence            223344455555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.34  E-value=0.00038  Score=68.30  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=19.7

Q ss_pred             CCCEEEccCCccccCCCCC-------ccccceEecccCccc
Q 037822          215 FPATVDLSSNSFEGPLPLW-------SFNVTKLYLRDNSFS  248 (497)
Q Consensus       215 ~l~~l~l~~~~~~~~~~~~-------~~~L~~L~l~~~~~~  248 (497)
                      .++.+++..|.+++.....       ++.++.+.+..|.+.
T Consensus       263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            4456666666665433222       236777777777665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.55  E-value=0.039  Score=29.01  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=14.9

Q ss_pred             ccccCEEEccCCcccccCChhhh
Q 037822          460 LYLVNLMDLSSNNLSGEMPVELT  482 (497)
Q Consensus       460 ~~~L~~L~l~~n~~~~~~~~~l~  482 (497)
                      +++|++|+|++|.|++..+..|+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            35788899999999876655443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.50  E-value=0.08  Score=25.14  Aligned_cols=10  Identities=50%  Similarity=0.674  Sum_probs=3.2

Q ss_pred             CCEEECcCCc
Q 037822           67 LKELYLSSNQ   76 (497)
Q Consensus        67 L~~L~l~~n~   76 (497)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.05  E-value=0.23  Score=26.56  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=16.4

Q ss_pred             ccccCEEEccCCcccccCChhh
Q 037822          460 LYLVNLMDLSSNNLSGEMPVEL  481 (497)
Q Consensus       460 ~~~L~~L~l~~n~~~~~~~~~l  481 (497)
                      +++|++|+|++|.++...++.|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3578999999999985544444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.05  E-value=0.23  Score=26.56  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=16.4

Q ss_pred             ccccCEEEccCCcccccCChhh
Q 037822          460 LYLVNLMDLSSNNLSGEMPVEL  481 (497)
Q Consensus       460 ~~~L~~L~l~~n~~~~~~~~~l  481 (497)
                      +++|++|+|++|.++...++.|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3578999999999985544444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.67  E-value=0.28  Score=26.21  Aligned_cols=13  Identities=54%  Similarity=0.659  Sum_probs=5.3

Q ss_pred             CCCEEECcCCcCc
Q 037822           66 FLKELYLSSNQMN   78 (497)
Q Consensus        66 ~L~~L~l~~n~~~   78 (497)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.67  E-value=0.28  Score=26.21  Aligned_cols=13  Identities=54%  Similarity=0.659  Sum_probs=5.3

Q ss_pred             CCCEEECcCCcCc
Q 037822           66 FLKELYLSSNQMN   78 (497)
Q Consensus        66 ~L~~L~l~~n~~~   78 (497)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.08  E-value=0.0092  Score=51.15  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=43.5

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ..+.||++.|++... -..|+.+..+..||++.|.+. ..|..+....+++.++.+.|+.. ..|..+++.++++.++.-
T Consensus        43 r~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            555555555555422 233555555555555555554 45555555555555555555554 455555555555555555


Q ss_pred             CCcc
Q 037822           98 ENQW  101 (497)
Q Consensus        98 ~n~l  101 (497)
                      ++.+
T Consensus       120 ~~~~  123 (326)
T KOG0473|consen  120 KTEF  123 (326)
T ss_pred             cCcc
Confidence            5543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.11  E-value=0.042  Score=47.27  Aligned_cols=84  Identities=20%  Similarity=0.148  Sum_probs=44.2

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .+...+.||++.|.+. ..-..++.++.+..|+++.|.+. ..|..+.....++.++...|... ..|.+++..+.++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            4455555666555543 22223444455555556555554 45555555555555555555544 455555556666666


Q ss_pred             Eeeccee
Q 037822          338 ILCNNHI  344 (497)
Q Consensus       338 ~l~~~~~  344 (497)
                      +..++.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            6555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	497
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-34
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-34
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		3e-06
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		8e-05
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		8e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		9e-05
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		3e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		6e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  142 bits (357), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 255/525 (48%), Gaps = 82/525 (15%)
Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           L+ L +  N+++GD+  S     NL +L++  N+F   IP  +G+ + L+ L +S N+++
Sbjct: 180 LKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
           G F       + +++L++S NQ+ G I     ++L  L  LA NK +  I    + +   
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-SLAENKFTGEIPDFLSGACD- 294
Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIP-DWFWQLDLTLDELD 197
                LT +++         P +  + + L +L L++   S  +P D   ++   L  LD
Sbjct: 295 ----TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLD 349
Query: 198 VAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGP-LPLWSFN----VTKLYLRDNSFSGP 250
           +++NE SG +P SL     +  T+DLSSN+F GP LP    N    + +LYL++N F+G 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
           IP                          ++ N  +L++L +S N LSG IP    ++S L
Sbjct: 410 IP-------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
             L +  N L GEIP+ +  + ++  LIL  N ++GE+P  L NC+ ++ + L +N+L+G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV----- 425
            IP WIG  + +L+IL+L +N F+G IP EL    +L  LDL+ N  +G IP  +     
Sbjct: 505 EIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 426 ---GNF-----------SGMKVEPPDS---VKYEGSLQVVL-----------KGSEYVFY 457
               NF            GMK E   +   ++++G     L               Y  +
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 458 TTLYLVN-----LMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           T+    N      +D+S N LSG +P E+  + +L  LNL  N +
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 32/258 (12%)
Query: 230 LPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN---GSVSKSICNLQQL 286
           LP WS N         +F G   RD   K+   T +D+S   LN    +VS S+ +L  L
Sbjct: 30  LPDWSSNKNPC-----TFDGVTCRD--DKV---TSIDLSSKPLNVGFSAVSSSLLSLTGL 79
Query: 287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP--ESIGSLLSVRFLILCNNHI 344
            +L +SN++++G +     + +SL  LD+S NSLSG +    S+GS   ++FL + +N +
Sbjct: 80  ESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Query: 345 S--GEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWI-GESMPSLSILRLRSNYFNGTIPPE 400
              G+V   LK  + ++ LDL  N +SG N+  W+  +    L  L +  N  +G +   
Sbjct: 139 DFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 401 LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL 460
            C    L  LD+S NN S  I P +G+ S ++       K  G     +        +T 
Sbjct: 198 RCV--NLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAI--------STC 246
Query: 461 YLVNLMDLSSNNLSGEMP 478
             + L+++SSN   G +P
Sbjct: 247 TELKLLNISSNQFVGPIP 264

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  142 bits (357), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 255/525 (48%), Gaps = 82/525 (15%)
Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           L+ L +  N+++GD+  S     NL +L++  N+F   IP  +G+ + L+ L +S N+++
Sbjct: 177 LKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
           G F       + +++L++S NQ+ G I     ++L  L  LA NK +  I    + +   
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-SLAENKFTGEIPDFLSGACD- 291
Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIP-DWFWQLDLTLDELD 197
                LT +++         P +  + + L +L L++   S  +P D   ++   L  LD
Sbjct: 292 ----TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLD 346
Query: 198 VAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGP-LPLWSFN----VTKLYLRDNSFSGP 250
           +++NE SG +P SL     +  T+DLSSN+F GP LP    N    + +LYL++N F+G 
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
           IP                          ++ N  +L++L +S N LSG IP    ++S L
Sbjct: 407 IP-------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
             L +  N L GEIP+ +  + ++  LIL  N ++GE+P  L NC+ ++ + L +N+L+G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV----- 425
            IP WIG  + +L+IL+L +N F+G IP EL    +L  LDL+ N  +G IP  +     
Sbjct: 502 EIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 426 ---GNF-----------SGMKVEPPDS---VKYEGSLQVVL-----------KGSEYVFY 457
               NF            GMK E   +   ++++G     L               Y  +
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 458 TTLYLVN-----LMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           T+    N      +D+S N LSG +P E+  + +L  LNL  N +
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 32/258 (12%)
Query: 230 LPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN---GSVSKSICNLQQL 286
           LP WS N         +F G   RD   K+   T +D+S   LN    +VS S+ +L  L
Sbjct: 27  LPDWSSNKNPC-----TFDGVTCRD--DKV---TSIDLSSKPLNVGFSAVSSSLLSLTGL 76
Query: 287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP--ESIGSLLSVRFLILCNNHI 344
            +L +SN++++G +     + +SL  LD+S NSLSG +    S+GS   ++FL + +N +
Sbjct: 77  ESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
Query: 345 S--GEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWI-GESMPSLSILRLRSNYFNGTIPPE 400
              G+V   LK  + ++ LDL  N +SG N+  W+  +    L  L +  N  +G +   
Sbjct: 136 DFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 401 LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL 460
            C    L  LD+S NN S  I P +G+ S ++       K  G     +        +T 
Sbjct: 195 RCV--NLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAI--------STC 243
Query: 461 YLVNLMDLSSNNLSGEMP 478
             + L+++SSN   G +P
Sbjct: 244 TELKLLNISSNQFVGPIP 261

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 8/203 (3%)
Query: 224 NSFEGPLPLWSFNVTKL---YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI 280
           N+  GP+P     +T+L   Y+   + SG IP DF  +I  L  LD S+N+L+G++  SI
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYI-LDMSNNSLSGEIPESIGSLLSVRFLIL 339
            +L  L+ +    N +SG IP  + + S L+  + +S N L+G+IP +  +L ++ F+ L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
             N + G+      +      + L  N L+ ++   +G S  +L+ L LR+N   GT+P 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK-NLNGLDLRNNRIYGTLPQ 262
Query: 400 ELCKLPALHILDLSHNNLSGIIP 422
            L +L  LH L++S NNL G IP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 110/251 (43%), Gaps = 40/251 (15%)
Query: 250 PIPRDFGQKIPFLTDLDIS-FNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS 308
           PIP      +P+L  L I   N+L G +  +I  L QL  L I++ N+SG IP   S I 
Sbjct: 67  PIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
           +L  LD S N+LSG                         +PPS+ +   +  +    N++
Sbjct: 126 TLVTLDFSYNALSGT------------------------LPPSISSLPNLVGITFDGNRI 161
Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVG-N 427
           SG IP   G      + + +  N   G IPP    L  L  +DLS N L G      G +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 428 FSGMKVE-PPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIH 486
            +  K+    +S+ ++     + K            +N +DL +N + G +P  LT+L  
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKN-----------LNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 487 LGTLNLSRNHL 497
           L +LN+S N+L
Sbjct: 270 LHSLNVSFNNL 280

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 195/457 (42%), Gaps = 70/457 (15%)
Query: 61  IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           + NL  L+ LYL SN ++  KFP++F   + ++VLD   N         H+ +  +++ L
Sbjct: 122 VHNLENLESLYLGSNHISSIKFPKDFPARN-LKVLDFQNN-------AIHYISREDMRSL 173
Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRN----QTELTTLVLNN 175
              +Q+ N+SL FN +            N++  +LG    T  ++     T   +++ N 
Sbjct: 174 ---EQAINLSLNFNGN------------NVKGIELGAFDSTIFQSLNFGGTPNLSVIFNG 218
Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIP---NSLGFRFPATVDLSSNSFEGPLPL 232
           ++ S T   W    +  +D+ D++   L G       SL  +     D+SS +F+    L
Sbjct: 219 LQNSTTQSLWLGTFE-DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQL 277
Query: 233 WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
              ++T  +L+       +P    + +  L  L +S N  +     S  N   L  L I 
Sbjct: 278 QELDLTATHLKG------LPSGM-KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR 330
Query: 293 NNNLSGEIPRLW------SNISSLYILDMSNNSLSGEIPESI--GSLLSVRFLILCNNHI 344
                G + +L         + +L  LD+S+N +      S+   +L  ++ L L +N  
Sbjct: 331 -----GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 345 SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKL 404
            G    + K C  ++ LDL   +L  N P    +++  L +L L   + + +    L  L
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 405 PALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS------EYVFYT 458
           P L  L+L  N           +F    +   + ++  GSL+V++  S      +   + 
Sbjct: 446 PVLRHLNLKGN-----------HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 459 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
           +L  ++ +DLS N+L+ +    L+ L  +  LNL+ N
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAAN 530

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 194/478 (40%), Gaps = 84/478 (17%)
Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSF-VGSIPPSIGNLTFLKELYLSSNQM 77
           LE L++  N+L      S   + +LR+L+L  N F V  +    GNLT L  L LS+ + 
Sbjct: 102 LEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 78  N--GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENI-SLIFNI 134
                 P     LS + +LDL     +G   ET    + N   L L     ++ S+  N+
Sbjct: 159 RQLDLLPVAHLHLSCI-LLDLVSYHIKG--GETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 135 SSHWIPPFKLTFI--NIRSCQLGPKFPTWLRNQTELTTLVLNNV----RISDTIPDWFW- 187
           S + +   +L+ I  N  +CQ    F + L     L  + L ++    + S  +  +FW 
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275
Query: 188 ---------QLDLT--LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWS-F 235
                     L +T  +D  +  Y+E   ++ + +       V L S   E    +++  
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSE--TALKSLMIEHVKNQVFLFSK--EALYSVFAEM 331
Query: 236 NVTKLYLRDNSF----SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVI 291
           N+  L + D  F      P P  F       T L+ + N    SV +    L++L TL++
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSF-------TFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 292 SNNNLSG--EIPRLWSNISSLYILDMSNNSLSGEI-------PESI-----------GSL 331
             N L    ++  +  N+SSL  LD+S NSL+           ESI           GS+
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 332 L-----SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSIL 386
                  V+ L L NN I   +P  + +   +  L++  NQL   +P  + + + SL  +
Sbjct: 445 FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502
Query: 387 RLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGS 444
            L  N       P  C  P +  L    N  SG++    G+ +      PDS K  GS
Sbjct: 503 WLHDN-------PWDCTCPGIRYLSEWINKHSGVVRNSAGSVA------PDSAKCSGS 547

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
           +VT+LYL  N F+  +P++       LT +D+S N ++   ++S  N+ QLLTL++S N 
Sbjct: 32  DVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPE 326
           L    PR +  + SL +L +  N +S  +PE
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 178/421 (42%), Gaps = 64/421 (15%)
Query: 37  LGYLKNLRYLELWHN---SFVGSIPPSIGNLTFLKELYLSSNQMNGKF------------ 81
           +G+LK L+ L + HN   SF   +P    NLT L+ L LSSN++   +            
Sbjct: 120 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 82  ----------PENFGQLSAVEVLDLSE----NQWEGI-ITETHFRNLSNLKELAL----- 121
                     P NF Q  A + + L +    N ++ + + +T  + L+ L+   L     
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 122 ----NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177
               N +  + S +  + +  I  F+L +++     +   F   L N +  + + +   R
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER 296
Query: 178 ISDTIPDWFWQ-LDL--------------TLDELDVAYNELSGSIPNSLGFRFPATVDLS 222
           + D   ++ WQ L+L              +L  L    N+  G+  + +       +DLS
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLS 355
Query: 223 SN--SFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG-QKIPFLTDLDISFNSLNGSVSKS 279
            N  SF+G      F  T L   D SF+G I        +  L  LD   ++L      S
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 280 I-CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGE-IPESIGSLLSVRFL 337
           +  +L+ L+ L IS+ +       +++ +SSL +L M+ NS     +P+    L ++ FL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
            L    +    P +  + S +  L++  NQL  ++P  I + + SL  + L +N ++ + 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 398 P 398
           P
Sbjct: 535 P 535

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 39  YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE 98
           YL NL  LEL  N      P  + NLT + EL LS N +  K       L +++ LDL+ 
Sbjct: 61  YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTS 116
Query: 99  NQWEGIITETHFRNLSNLKELALN-KQSENISLIFNISSHWIPPFKLTFINIRSCQLGPK 157
            Q   +   T    LSNL+ L L+  Q  NIS +  +++       L +++I + Q+   
Sbjct: 117 TQITDV---TPLAGLSNLQVLYLDLNQITNISPLAGLTN-------LQYLSIGNAQVSDL 166
Query: 158 FPTWLRNQTELTTLVLNNVRISDTIP 183
            P  L N ++LTTL  ++ +ISD  P
Sbjct: 167 TP--LANLSKLTTLKADDNKISDISP 190

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 39  YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE 98
           YL NL  LEL  N      P  + NLT + EL LS N +  K       L +++ LDL+ 
Sbjct: 67  YLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTS 122
Query: 99  NQWEGIITETHFRNLSNLKELALN-KQSENISLIFNISSHWIPPFKLTFINIRSCQLGPK 157
            Q   +   T    LSNL+ L L+  Q  NIS +  +++       L +++I + Q+   
Sbjct: 123 TQITDV---TPLAGLSNLQVLYLDLNQITNISPLAGLTN-------LQYLSIGNNQVNDL 172
Query: 158 FPTWLRNQTELTTLVLNNVRISDTIP 183
            P  L N ++LTTL  ++ +ISD  P
Sbjct: 173 TP--LANLSKLTTLRADDNKISDISP 196

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
           L +L L  NQL    P     L  L YL L +N  + S+P  +   LT LKEL L +NQ+
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 78  NGKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123
             + PE  F +L+ ++ L L  NQ +  + E  F +L  LK L L +
Sbjct: 170 K-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQE 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	497
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-114
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  354 bits (911), Expect = e-114
 Identities = 135/510 (26%), Positives = 228/510 (44%), Gaps = 58/510 (11%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
                    L+ L +  N+++GD+   +    NL +L++  N+F   IP  +G+ + L+ 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQH 227

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENIS 129
           L +S N+++G F       + +++L++S NQ+ G I       L +L+ L+L        
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLA------- 277

Query: 130 LIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQ-TELTTLVLNNVRISDTIPDWFWQ 188
                                  +   + P +L      LT L L+       +P +F  
Sbjct: 278 ---------------------ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGPLPLWSFNVTK----LYL 242
               L+ L ++ N  SG +P     +      +DLS N F G LP    N++     L L
Sbjct: 317 CS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 243 RDNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP 301
             N+FSGPI  +  Q     L +L +  N   G +  ++ N  +L++L +S N LSG IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 302 RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSL 361
               ++S L  L +  N L GEIP+ +  + ++  LIL  N ++GE+P  L NC+ ++ +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 362 DLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGII 421
            L +N+L+G IP WIG  + +L+IL+L +N F+G IP EL    +L  LDL+ N  +G I
Sbjct: 496 SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 422 PPCVGNFSGM------KVEPPDSVKYEGSLQVV--------LKGSEYVFYTTLYLVNLMD 467
           P  +   SG         +    +K +G  +           +G        L   N  +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 468 LSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           ++S    G           +  L++S N L
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  307 bits (790), Expect = 1e-96
 Identities = 138/509 (27%), Positives = 222/509 (43%), Gaps = 62/509 (12%)

Query: 5   DFIDGLSECTNSSLLEKLELGFNQLNGDLPS--SLGYLKNLRYLELWHNSFVGSIP-PSI 61
                +S    S+ L  L+L  N L+G + +  SLG    L++L +  N+          
Sbjct: 88  HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147

Query: 62  GNLTFLKELYLSSNQMNGKFPENF---GQLSAVEVLDLSENQWEGIITETHFRNLSNLKE 118
             L  L+ L LS+N ++G     +        ++ L +S N+  G +         NL+ 
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEF 204

Query: 119 LAL--NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV 176
           L +  N  S  I  + + S+       L  ++I   +L   F   +   TEL  L +++ 
Sbjct: 205 LDVSSNNFSTGIPFLGDCSA-------LQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 177 RISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGPLPLWS 234
           +    IP    +   +L  L +A N+ +G IP+ L         +DLS N F G +P + 
Sbjct: 258 QFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 235 FNVTKL---YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNL-QQLLTLV 290
            + + L    L  N+FSG +P D   K+  L  LD+SFN  +G + +S+ NL   LLTL 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 291 ISNNNLSGEIPRLWSNI--SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV 348
           +S+NN SG I         ++L  L + NN  +G+IP ++ +   +  L L  N++SG +
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 349 PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALH 408
           P SL + S +  L L  N L G IP  +   + +L  L L  N   G IP  L     L+
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 409 ILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDL 468
            + LS+N L+G IP  +G    + +                                + L
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAI--------------------------------LKL 521

Query: 469 SSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           S+N+ SG +P EL     L  L+L+ N  
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  304 bits (780), Expect = 2e-95
 Identities = 136/496 (27%), Positives = 211/496 (42%), Gaps = 51/496 (10%)

Query: 24  LGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPE 83
              N     + SSL  L  L  L L ++   GS+         L  L LS N ++G    
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTT 118

Query: 84  --NFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPP 141
             + G  S ++ L++S N  +     +    L++L+ L L   S N S+       W+  
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL---SAN-SISGANVVGWVLS 174

Query: 142 F---KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
               +L  + I   ++       +     L  L +++   S  IP +       L  LD+
Sbjct: 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCS-ALQHLDI 230

Query: 199 AYNELSGSIPNSLGFRFPA--TVDLSSNSFEGPLPLWSF-NVTKLYLRDNSFSGPIPRDF 255
           + N+LSG    ++         +++SSN F GP+P     ++  L L +N F+G IP   
Sbjct: 231 SGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289

Query: 256 GQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLW-SNISSLYILD 314
                 LT LD+S N   G+V     +   L +L +S+NN SGE+P      +  L +LD
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 315 MSNNSLSGEIPESIGSLL-SVRFLILCNNHISGEVPPSLKNCSM--MDSLDLGDNQLSGN 371
           +S N  SGE+PES+ +L  S+  L L +N+ SG + P+L       +  L L +N  +G 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 372 IPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGM 431
           IP  +  +   L  L L  NY +GTIP  L  L  L  L L  N L G IP  +     +
Sbjct: 410 IPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 432 KV----------EPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVEL 481
           +           E P  +    +L  +                   LS+N L+GE+P  +
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWI------------------SLSNNRLTGEIPKWI 510

Query: 482 TRLIHLGTLNLSRNHL 497
            RL +L  L LS N  
Sbjct: 511 GRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  298 bits (766), Expect = 3e-93
 Identities = 132/493 (26%), Positives = 217/493 (44%), Gaps = 53/493 (10%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
               L+ L L  N+  G++P  L G    L  L+L  N F G++PP  G+ + L+ L LS
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 74  SNQMNGKFP-ENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIF 132
           SN  +G+ P +   ++  ++VLDLS N++ G + E+     ++L  L L   S N +   
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL---SSN-NFSG 382

Query: 133 NISSHW--IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLD 190
            I  +    P   L  + +++     K P  L N +EL +L L+   +S TIP     L 
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 191 LTLDELDVAYNELSGSIPNSLGF-RFPATVDLSSNSFEGPLPLWSFNVTKL---YLRDNS 246
             L +L +  N L G IP  L + +   T+ L  N   G +P    N T L    L +N 
Sbjct: 443 -KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 247 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSN 306
            +G IP+  G ++  L  L +S NS +G++   + + + L+ L ++ N  +G IP     
Sbjct: 502 LTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 307 ISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN--HISGEVPPSLKNCSMMDSLDLG 364
            S      ++ N ++G+    I +    +      N     G     L   S  +  ++ 
Sbjct: 561 QS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC 424
                G+       +  S+  L +  N  +G IP E+  +P L IL+L HN++SG IP  
Sbjct: 617 SRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 425 VGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL 484
           VG+  G+ +                                +DLSSN L G +P  ++ L
Sbjct: 676 VGDLRGLNI--------------------------------LDLSSNKLDGRIPQAMSAL 703

Query: 485 IHLGTLNLSRNHL 497
             L  ++LS N+L
Sbjct: 704 TMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  277 bits (710), Expect = 4e-85
 Identities = 136/478 (28%), Positives = 203/478 (42%), Gaps = 58/478 (12%)

Query: 13  CTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP-SIGNLTFLKELY 71
                 L  L+L  N   G +P   G    L  L L  N+F G +P  ++  +  LK L 
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 72  LSSNQMNGKFPENFGQLSA-VEVLDLSENQWEGIITETHFRN-LSNLKELAL--NKQSEN 127
           LS N+ +G+ PE+   LSA +  LDLS N + G I     +N  + L+EL L  N  +  
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 128 I-SLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
           I   + N S        L  +++    L    P+ L + ++L  L L    +   IP   
Sbjct: 410 IPPTLSNCSE-------LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLG-FRFPATVDLSSNSFEGPLPLWSFNVTKL---YL 242
             +  TL+ L + +N+L+G IP+ L        + LS+N   G +P W   +  L    L
Sbjct: 463 MYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 243 RDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR 302
            +NSFSG IP + G     L  LD++ N  NG++  ++      +    + N ++G+   
Sbjct: 522 SNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIAGKRYV 576

Query: 303 LWSNISSLYILDMSNN--SLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDS 360
              N         + N     G   E +  L +     + +    G   P+  N   M  
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636

Query: 361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
           LD+  N LSG IP  IG SMP L IL L  N  +G+IP E+  L  L+ILDLS N L G 
Sbjct: 637 LDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 421 IPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP 478
           IP  +   + +                                  +DLS+NNLSG +P
Sbjct: 696 IPQAMSALTMLTE--------------------------------IDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  262 bits (673), Expect = 1e-79
 Identities = 128/466 (27%), Positives = 184/466 (39%), Gaps = 77/466 (16%)

Query: 42  NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQW 101
           +L    L  N    ++  S+ +LT L+ L+LS++ +NG     F   +++  LDLS N  
Sbjct: 56  DLSSKPL--NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 102 EGII-TETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQL-GPKFP 159
            G + T T   + S LK L                            N+ S  L  P   
Sbjct: 113 SGPVTTLTSLGSCSGLKFL----------------------------NVSSNTLDFPGKV 144

Query: 160 TWLRNQTELTTLVLNNVRISDTIPDWFWQLD--LTLDELDVAYNELSGSIPNSLGFRFPA 217
           +       L  L L+   IS      +   D    L  L ++ N++SG +  S       
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR-CVNLE 203

Query: 218 TVDLSSNSFEGPLP-LWSF-NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS 275
            +D+SSN+F   +P L     +  L +  N  SG   R        L  L+IS N   G 
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGP 262

Query: 276 VSKSICNLQQLLTLVISNNNLSGEIPR-LWSNISSLYILDMSNNSLSGEIPESIGSLLSV 334
           +      L+ L  L ++ N  +GEIP  L     +L  LD+S N   G +P   GS   +
Sbjct: 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 335 RFLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 393
             L L +N+ SGE+P  +L     +  LDL  N+ SG +P  +     SL  L L SN F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 394 NGTIPPELCK--LPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKG 451
           +G I P LC+     L  L L +N  +G IPP + N S +                    
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS------------------ 422

Query: 452 SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                         + LS N LSG +P  L  L  L  L L  N L
Sbjct: 423 --------------LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  200 bits (511), Expect = 1e-56
 Identities = 91/347 (26%), Positives = 152/347 (43%), Gaps = 52/347 (14%)

Query: 164 NQTELTTLVLNNVRISD---TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVD 220
              ++T++ L++  ++     +      L   L+ L ++ + ++GS+          ++D
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLT-GLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 221 LSSNSFEGPLPLWSF-----NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS 275
           LS NS  GP+   +       +  L +  N+   P     G K+  L  LD+S NS++G+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 276 VSKSIC---NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLL 332
                       +L  L IS N +SG++    S   +L  LD+S+N+ S  IP  +G   
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCS 223

Query: 333 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY 392
           +++ L +  N +SG+   ++  C+ +  L++  NQ  G IP      + SL  L L  N 
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENK 280

Query: 393 FNGTIPPELC-KLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKG 451
           F G IP  L      L  LDLS N+  G +PP  G+ S               L+     
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS--------------LLES---- 322

Query: 452 SEYVFYTTLYLVNLMDLSSNNLSGEMPVE-LTRLIHLGTLNLSRNHL 497
                         + LSSNN SGE+P++ L ++  L  L+LS N  
Sbjct: 323 --------------LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (463), Expect = 4e-50
 Identities = 82/318 (25%), Positives = 133/318 (41%), Gaps = 39/318 (12%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSS 74
           + S L  L+L  N L G++P  L Y+K L  L L  N   G IP  + N T L  + LS+
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNI 134
           N++ G+ P+  G+L  + +L LS N + G I      +  +L  L L   + N       
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDL---NTN-----LF 550

Query: 135 SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLD-LTL 193
           +                   G   P  +  Q+      +    I+     +         
Sbjct: 551 N-------------------GT-IPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKE 586

Query: 194 DELDVAYNELSGSIPNSLG-FRFPATVDLSSNSFEGPLPLWSFN---VTKLYLRDNSFSG 249
                   E  G     L         +++S  + G       N   +  L +  N  SG
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
            IP++ G  +P+L  L++  N ++GS+   + +L+ L  L +S+N L G IP+  S ++ 
Sbjct: 647 YIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 310 LYILDMSNNSLSGEIPES 327
           L  +D+SNN+LSG IPE 
Sbjct: 706 LTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (320), Expect = 3e-31
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 32/231 (13%)

Query: 281 CNLQQLLTLVISNNNLS---GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
           C   ++ ++ +S+  L+     +     +++ L  L +SN+ ++G +        S+  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 338 ILCNNHISGEVPP--SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395
            L  N +SG V    SL +CS +  L++  N L        G  + SL +L L +N  +G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 396 TIPPELC---KLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVV---- 448
                         L  L +S N +SG +   V                  +L+ +    
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV--------------NLEFLDVSS 209

Query: 449 --LKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                          L +L D+S N LSG+    ++    L  LN+S N  
Sbjct: 210 NNFSTGIPFLGDCSALQHL-DISGNKLSGDFSRAISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 3e-15
 Identities = 39/220 (17%), Positives = 63/220 (28%), Gaps = 61/220 (27%)

Query: 11  SECTNSSLLEKLELGFN--QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLK 68
               N  + ++     N  +  G     L  L       +    + G   P+  N   + 
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 69  ELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENI 128
            L +S N ++G  P+  G +  + +L+L  N   G I +    +L  L  L         
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNIL--------- 685

Query: 129 SLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188
               ++SS                                     N   +   IP     
Sbjct: 686 ----DLSS-------------------------------------NK--LDGRIPQAMSA 702

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG 228
           L   L E+D++ N LSG IP    F            F  
Sbjct: 703 LT-MLTEIDLSNNNLSGPIPEMGQFET-----FPPAKFLN 736

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (540), Expect = 2e-61
 Identities = 107/506 (21%), Positives = 178/506 (35%), Gaps = 51/506 (10%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSS 74
             + L +L L  N +     +     KNL  L+L HN    +   +   L  L+EL LS+
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 75  NQMNGKFPENFG--QLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIF 132
           N++     E       S+++ L+LS NQ +       F  +  L  L LN    N+ L  
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLN----NVQLGP 209

Query: 133 NISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT 192
           ++                      +        T +  L L+N ++S T    F  L  T
Sbjct: 210 SL---------------------TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 193 -LDELDVAYNELSGSIPNSLG-FRFPATVDLSSNSFEGPLPLW------------SFNVT 238
            L  LD++YN L+    +S           L  N+ +                    + T
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 239 KLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG 298
           K  +   S        F   +  L  L++  N + G  S     L  L  L +SN+  S 
Sbjct: 309 KQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 299 EIPRLWS----NISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPS-LK 353
                 +      S L+IL+++ N +S    ++   L  +  L L  N I  E+     +
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG--TIPPELCKLPALHILD 411
               +  + L  N+            +PSL  L LR        + P     L  L ILD
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 412 LSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSN 471
           LS+NN++ I    +     +++            +    G    F   L  +++++L SN
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 472 NLSGEMPVELTRLIHLGTLNLSRNHL 497
                       L  L  ++L  N+L
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNL 572

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  210 bits (537), Expect = 8e-61
 Identities = 109/528 (20%), Positives = 186/528 (35%), Gaps = 54/528 (10%)

Query: 12  ECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELY 71
           +CT S   E  +    +L   +P  L    N+  L L HN        +    + L  L 
Sbjct: 1   KCTVS--HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 72  LSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLI 131
           +  N ++   PE   +L  ++VL+L  N+   +  +T F   +NL EL L     +I  I
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSN--SIQKI 112

Query: 132 FNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDL 191
            N          L  +++    L             L  L+L+N +I     +       
Sbjct: 113 KNNPFVKQK--NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 192 T-LDELDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGPLPLWSF------NVTKLYLR 243
           + L +L+++ N++    P           + L++      L           ++  L L 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 244 DNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR 302
           ++  S      F   K   LT LD+S+N+LN   + S   L QL    +  NN+      
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 303 LWSNISSLYILDMSNN---------SLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLK 353
               + ++  L++  +         SL      S   L  +  L + +N I G       
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 354 NCSMMDSLDLGDNQLSGNIP---AWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL 410
               +  L L ++  S        ++  +   L IL L  N  +         L  L +L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 411 DLSHNNLSGIIPPCVGNFSGMK-------------VEPPDSVKYEGSLQVV------LKG 451
           DL  N +   +      + G++                 +S     SLQ +      LK 
Sbjct: 411 DLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 452 SEYVFYTTLYLVNL--MDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
            +        L NL  +DLS+NN++      L  L  L  L+L  N+L
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  197 bits (503), Expect = 4e-56
 Identities = 81/428 (18%), Positives = 150/428 (35%), Gaps = 47/428 (10%)

Query: 19  LEKLELGFNQLNGDLPSSLGY---LKNLRYLELWHNSFVGSIPPSIGNLTF--LKELYLS 73
           L  L L   QL   L   L       ++R L L ++    +   +   L +  L  L LS
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 74  SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFN 133
            N +N    ++F  L  +E   L  N  + +        L N++ L L +     S+   
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 134 ISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTL 193
                     L  I+              +    L  L + +  I     + F  L   L
Sbjct: 316 ---------SLPKID----------DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NL 355

Query: 194 DELDVAYNELSGSIPNSLGFRFPA-----TVDLSSNSFEGPLPLWSF----NVTKLYLRD 244
             L ++ +  S     +  F   A      ++L+ N     +   +F    ++  L L  
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGL 414

Query: 245 NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG--EIPR 302
           N     +     + +  + ++ +S+N        S   +  L  L++    L      P 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 303 LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS--------GEVPPSLKN 354
            +  + +L ILD+SNN+++    + +  L  +  L L +N+++        G     LK 
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH 414
            S +  L+L  N     IP  + + +  L I+ L  N  N           +L  L+L  
Sbjct: 535 LSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 415 NNLSGIIP 422
           N ++ +  
Sbjct: 594 NLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (452), Expect = 6e-49
 Identities = 85/435 (19%), Positives = 161/435 (37%), Gaps = 42/435 (9%)

Query: 4   SDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGN 63
           S   +        + L  L+L +N LN     S  +L  L Y  L +N+       S+  
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 64  LTFLKELYLSSNQMNGKFPEN---------FGQLSAVEVLDLSENQWEGIITETHFRNLS 114
           L  ++ L L  +                  F  L  +E L++ +N   GI +   F  L 
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLI 353

Query: 115 NLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLN 174
           NLK L+L+    ++  + N +   +    L  +N+   ++             L  L L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 175 NVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWS 234
              I   +    W+    + E+ ++YN+      NS                   +P   
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL----------------VP--- 454

Query: 235 FNVTKLYLRDNSFSG-PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN 293
            ++ +L LR  +           Q +  LT LD+S N++       +  L++L  L + +
Sbjct: 455 -SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 294 NNLS--------GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS 345
           NNL+        G        +S L+IL++ +N       E    L  ++ + L  N+++
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 346 GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLP 405
                   N   + SL+L  N ++       G +  +L+ L +R N F+ T         
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES---IAW 630

Query: 406 ALHILDLSHNNLSGI 420
            ++ ++ +H N+  +
Sbjct: 631 FVNWINETHTNIPEL 645

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (298), Expect = 1e-28
 Identities = 72/342 (21%), Positives = 129/342 (37%), Gaps = 36/342 (10%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIG----NLTFLKELYLSS 74
           LE L +  N + G   +    L NL+YL L ++        +        + L  L L+ 
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSENISLIF 132
           N+++    + F  L  +EVLDL  N+    +T   +R L N+ E+ L  NK  +     F
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 133 NISSHWIPPFKLTFINIRSCQLG--PKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLD 190
            +         L  + +R   L      P+  +    LT L L+N  I++   D    L+
Sbjct: 451 ALVP------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPA---------TVDLSSNSFEGPLPLWSF----NV 237
             L+ LD+ +N L+    ++                 ++L SN F+  +P+  F     +
Sbjct: 505 -KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFEL 562

Query: 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSIC-NLQQLLTLVISNNNL 296
             + L  N+ +      F  +   L  L++  N +     K      + L  L +  N  
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQ-VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

Query: 297 SGEIPRL-----WSNISSLYILDMSNNSLSGEIPESIGSLLS 333
                 +     W N +   I ++S++ L    P   G  + 
Sbjct: 622 DCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  205 bits (523), Expect = 3e-59
 Identities = 75/530 (14%), Positives = 152/530 (28%), Gaps = 79/530 (14%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQLNGD----LPSSLGYLKNLRYLELWHNSFVGS 56
           G V D I  L+E      LE L LG +    +     P  +    +    +     +  +
Sbjct: 95  GRVPDAIGQLTE------LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148

Query: 57  IPPSIGNLTF--LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
                    F  L +  ++S+       ++         +    N    +        L+
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLT 206

Query: 115 NLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLN 174
            L++  +           +              N    Q          N  +LT + + 
Sbjct: 207 KLRQFYMG---------NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 175 NVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWS 234
           N      +P +   L   +  ++VA N           ++  A   +             
Sbjct: 258 NCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEK---------- 306

Query: 235 FNVTKLYLRDNSF-SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN 293
             +  +Y+  N+  + P+     + +  L  L+  +N L G +  +  +  +L +L ++ 
Sbjct: 307 --IQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362

Query: 294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPE--SIGSLLSVRFLILCNNHISG----- 346
           N ++            +  L  ++N L   IP      S+  +  +    N I       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 347 --EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-------TI 397
              + P+      + S++L +NQ+S         +   LS + L  N             
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFS-TGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 398 PPELCKLPALHILDLSHNNLSGIIPP-CVGNFSGMKV---------EPPDSVKYEGSLQV 447
                    L  +DL  N L+ +           +           + P       +L+ 
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540

Query: 448 VLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                         + N  D   N    E P  +T    L  L +  N +
Sbjct: 541 ------------FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (487), Expect = 3e-54
 Identities = 72/533 (13%), Positives = 166/533 (31%), Gaps = 88/533 (16%)

Query: 2   EVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLK--NLRYLELWHNSFVGSIPP 59
           +V++ + G    + +   E+ +                    +L    +  +    SI  
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
           S        ++   SN +     +   +L+ +    +  + +               +  
Sbjct: 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE----AWENENS 232

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
              +Q +   L ++          LT + + +C    K PT+L+   E+  + +   R  
Sbjct: 233 EYAQQYKTEDLKWDNLK------DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 180 DTIPDWFWQLDLT-------LDELDVAYNEL-SGSIPNSLGFRFPA--TVDLSSNSFEGP 229
                      L        +  + + YN L +  +  SL  +      ++   N  EG 
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGK 345

Query: 230 LPLWSF----NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQ 284
           LP  +F     +  L L  N  +  IP +F      + +L  + N L          ++ 
Sbjct: 346 LP--AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402

Query: 285 QLLTLVISNNNLSG-------EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
            +  +  S N +          +        ++  +++SNN +S    E   +   +  +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 338 ILCNNHISG-------EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS 390
            L  N ++        +   + KN  ++ S+DL  N+L+     +   ++P L  + L  
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

Query: 391 NYFNGTIPPELCKLPAL------HILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGS 444
           N F+   P +      L      +  D   N      P  +     +             
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ----------- 570

Query: 445 LQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                                + + SN++  ++  ++    ++  L++  N  
Sbjct: 571 ---------------------LQIGSNDIR-KVNEKI--TPNISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  183 bits (466), Expect = 3e-51
 Identities = 68/503 (13%), Positives = 142/503 (28%), Gaps = 99/503 (19%)

Query: 26  FNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNG----KF 81
            +        SL     +  L L      G +P +IG LT L+ L L S+          
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 82  PENFGQLSAVEVLDLSENQWEG-IITETHFRNLSNLKELALNKQSENISLIFNISSHWIP 140
           P+      + E        ++   +      + S+L +  +N   +  S+          
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI---------- 175

Query: 141 PFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAY 200
                                 R   + T +   +  I+  +     +L   L +  +  
Sbjct: 176 ------------------KKSSRITLKDTQIGQLSNNIT-FVSKAVMRL-TKLRQFYMGN 215

Query: 201 NELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKL---YLRDNSFSGPIPRDFGQ 257
           +                  +           L   N+  L    + +      +P     
Sbjct: 216 SPFVAENICEAW----ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 258 KIPFLTDLDISFNSL--------NGSVSKSICNLQQLLTLVISNNNL-SGEIPRLWSNIS 308
            +P +  ++++ N          +          +++  + I  NNL +  +      + 
Sbjct: 272 -LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330

Query: 309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
            L +L+   N L G++P   GS + +  L L  N I+            +++L    N+L
Sbjct: 331 KLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNG-------TIPPELCKLPALHILDLSHNNLSGII 421
                 +  +S+  +S +    N            + P   K   +  ++LS+N +S   
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 422 PPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG------ 475
                  S               L  +                  +L  N L+       
Sbjct: 450 KELFSTGS--------------PLSSI------------------NLMGNMLTEIPKNSL 477

Query: 476 -EMPVELTRLIHLGTLNLSRNHL 497
            +          L +++L  N L
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (448), Expect = 1e-48
 Identities = 68/430 (15%), Positives = 142/430 (33%), Gaps = 74/430 (17%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFV--------GSIPPSIGNLTF 66
           N   L  +E+        LP+ L  L  ++ + +  N  +                    
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 67  LKELYLSSNQM-NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQS 125
           ++ +Y+  N +       +  ++  + +L+   NQ EG +    F +   L  L L   +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNL---A 361

Query: 126 ENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW 185
            N      I+   IP                    +     ++  L   + ++   IP+ 
Sbjct: 362 YN-----QITE--IPA------------------NFCGFTEQVENLSFAHNKLK-YIPNI 395

Query: 186 FWQLDLT-LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD 244
           F    ++ +  +D +YNE+      +     P                   NV+ + L +
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-------------NVSSINLSN 442

Query: 245 NSFSGPIPRDFGQKIPFLTDLDISFNSLNG-------SVSKSICNLQQLLTLVISNNNLS 297
           N  S      F      L+ +++  N L           +++  N   L ++ +  N L+
Sbjct: 443 NQISKFPKELFS-TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 298 GEIPRL-WSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN------NHISGEVPP 350
                   + +  L  +D+S NS S   P    +  +++   + N      N    E P 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 351 SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL 410
            +  C  +  L +G N +   +   I    P++S+L ++ N         +C      + 
Sbjct: 561 GITLCPSLTQLQIGSNDIRK-VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 411 DLSHNNLSGI 420
            L ++    I
Sbjct: 617 MLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 24/242 (9%), Positives = 67/242 (27%), Gaps = 25/242 (10%)

Query: 264 DLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSG- 322
           + +   +        S+ +  ++  L +     SG +P     ++ L +L + ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 323 ---EIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD--SLDLGDNQLSGNIPAWIG 377
                P+ I + +S         H               D     +  +    +I     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 378 ESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPD 437
                 + +   SN     +   + +L  L    + ++                +     
Sbjct: 181 -ITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE----- 233

Query: 438 SVKYEGSLQVVLKGSEYVFYTTLYLVNL--MDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
                       +  +        L +L  +++ +     ++P  L  L  +  +N++ N
Sbjct: 234 ----------YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 496 HL 497
             
Sbjct: 284 RG 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  188 bits (481), Expect = 3e-56
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 13/245 (5%)

Query: 193 LDELDVAYNELSGS--IPNSLG-FRFPATVDLSS-NSFEGPLPLWSFNVTKL---YLRDN 245
           ++ LD++   L     IP+SL    +   + +   N+  GP+P     +T+L   Y+   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS 305
           + SG IP    Q I  L  LD S+N+L+G++  SI +L  L+ +    N +SG IP  + 
Sbjct: 112 NVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 306 NISSLY-ILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 364
           + S L+  + +S N L+G+IP +  +L ++ F+ L  N + G+      +      + L 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC 424
            N L+ ++         +L+ L LR+N   GT+P  L +L  LH L++S NNL G IP  
Sbjct: 230 KNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286

Query: 425 VGNFS 429
            GN  
Sbjct: 287 GGNLQ 291

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (474), Expect = 4e-55
 Identities = 71/308 (23%), Positives = 126/308 (40%), Gaps = 45/308 (14%)

Query: 196 LDVAYNELSGSIPNSLGFRFPATV-DLSSNSFEGPLPLWSF-----NVTKLYLRD-NSFS 248
            D       G + ++    +     DLS  +   P P+ S       +  LY+   N+  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 249 GPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS 308
           GPIP     K+  L  L I+  +++G++   +  ++ L+TL  S N LSG +P   S++ 
Sbjct: 91  GPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 309 SLYILDMSNNSLSGEIPESIGSLLS-VRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ 367
           +L  +    N +SG IP+S GS       + +  N ++G++PP+  N ++   +DL  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNM 208

Query: 368 LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN 427
           L G+     G S  +   + L  N     +  ++     L+ LDL +N + G +P  +  
Sbjct: 209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 428 FSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHL 487
                                            +L +L ++S NNL GE+P +   L   
Sbjct: 267 LK-------------------------------FLHSL-NVSFNNLCGEIP-QGGNLQRF 293

Query: 488 GTLNLSRN 495
                + N
Sbjct: 294 DVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  182 bits (464), Expect = 1e-53
 Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 14/257 (5%)

Query: 244 DNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS--VSKSICNLQQLLTLVISN-NNLSGEI 300
           + ++ G +     Q    + +LD+S  +L     +  S+ NL  L  L I   NNL G I
Sbjct: 35  NRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDS 360
           P   + ++ L+ L +++ ++SG IP+ +  + ++  L    N +SG +PPS+ +   +  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
           +    N++SG IP   G      + + +  N   G IPP    L  L  +DLS N L G 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

Query: 421 IPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVE 480
                G+    +            L       +      L   N +DL +N + G +P  
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDL------GKVGLSKNL---NGLDLRNNRIYGTLPQG 263

Query: 481 LTRLIHLGTLNLSRNHL 497
           LT+L  L +LN+S N+L
Sbjct: 264 LTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (419), Expect = 4e-47
 Identities = 75/349 (21%), Positives = 123/349 (35%), Gaps = 82/349 (23%)

Query: 11  SECTNSSLLEKLELGFNQLNG--DLPSSLGYLKNLRYLELWH-NSFVGSIPPSIGNLTFL 67
              T +  +  L+L    L     +PSSL  L  L +L +   N+ VG IPP+I  LT L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 68  KELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSEN 127
             LY++   ++G  P+   Q+  +  LD S N   G +                      
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL---------------------- 141

Query: 128 ISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFW 187
                                          P  + +   L  +  +  RIS  IPD + 
Sbjct: 142 -------------------------------PPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 188 QLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSF 247
                   + ++ N L+G IP +                       + N+  + L  N  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFA---------------------NLNLAFVDLSRNML 209

Query: 248 SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNI 307
            G     FG        + ++ NSL   +   +   + L  L + NN + G +P+  + +
Sbjct: 210 EGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCS 356
             L+ L++S N+L GEIP+  G+L         NN      P  L  C+
Sbjct: 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
           L +   S  L  L+L  N++ G LP  L  LK L  L +  N+  G I P  GNL     
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295

Query: 70  LYLSSN 75
              ++N
Sbjct: 296 SAYANN 301

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  195 bits (498), Expect = 6e-56
 Identities = 101/505 (20%), Positives = 174/505 (34%), Gaps = 62/505 (12%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKEL 70
               + S L  L L  N +      +   L +L+ L     +        IG+L  LKEL
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 71  YLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLK--ELALNKQSEN 127
            ++ N +   K PE F  L+ +E LDLS N+ + I      R L  +    L+L+     
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNP 188

Query: 128 ISLIFNISSHWIPPFKLTFINIRSCQL-GPKFPTWLRNQTELTTLVL------NNVRISD 180
           ++    I        +L  + +R+         T ++    L    L      N   +  
Sbjct: 189 MN---FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 181 TIPDWFWQL-DLTLDELDVAYNELSGSIPNSL--GFRFPATVDLSSNSFEGPLPL-WSFN 236
                   L +LT++E  +AY +        L       ++  L S + E      ++F 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296
              L L +  F           +   +   ++F S  G  + S  +L  L  L +S N L
Sbjct: 306 WQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 297 S--GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPS-LK 353
           S  G   +     +SL  LD+S N +   +  +   L  +  L   ++++      S   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLPALHILDL 412
           +   +  LD+                + SL +L++  N F     P+   +L  L  LDL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 413 SHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNN 472
           S   L  + P    + S ++V                                +++S NN
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQV--------------------------------LNMSHNN 505

Query: 473 LSGEMPVELTRLIHLGTLNLSRNHL 497
                      L  L  L+ S NH+
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (487), Expect = 2e-54
 Identities = 80/500 (16%), Positives = 156/500 (31%), Gaps = 60/500 (12%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSS 74
           +   L+ L+L   ++      +   L +L  L L  N        +   L+ L++L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSENISLIF 132
             +        G L  ++ L+++ N  +      +F NL+NL+ L L  NK         
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 133 NISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT 192
            +      P     +++    +    P   +    L  L L N   S  +     Q    
Sbjct: 170 RVLHQ--MPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 193 LDELDVAYNELSGSI----PNSLGFRFPATVDLSSNSFEG---------PLPLWSFNVTK 239
           L+   +   E          +         + +                 L     NV+ 
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
             L   +        +         L++         +  + +L++L     +  +  G 
Sbjct: 287 FSLVSVTIERVKDFSYNFG---WQHLELVNCKFGQFPTLKLKSLKRL-----TFTSNKGG 338

Query: 300 IPRLWSNISSLYILDMSNNSLS--GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM 357
                 ++ SL  LD+S N LS  G   +S     S+++L L  N +   +  +      
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ 397

Query: 358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL 417
           ++ LD   + L       +  S+ +L  L +   +           L +L +L ++ N+ 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM 477
                P +  F+ ++           +L                    +DLS   L    
Sbjct: 458 QENFLPDI--FTELR-----------NLTF------------------LDLSQCQLEQLS 486

Query: 478 PVELTRLIHLGTLNLSRNHL 497
           P     L  L  LN+S N+ 
Sbjct: 487 PTAFNSLSSLQVLNMSHNNF 506

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (483), Expect = 1e-53
 Identities = 92/472 (19%), Positives = 156/472 (33%), Gaps = 55/472 (11%)

Query: 19  LEKLELGFNQLNG-DLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLK----ELYLS 73
           L++L +  N +    LP     L NL +L+L  N         +  L  +      L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 74  SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE--LALNKQSENISLI 131
            N MN   P  F ++  +  L L  N     + +T  + L+ L+   L L +     +L 
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 132 FNISSHWIPPFKLTFINIRSCQL---GPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188
               S       LT    R   L              T +++  L +V I        + 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FS 301

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDN-- 245
            +     L++   +           +    +  +SN            ++  L L  N  
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR-LW 304
           SF G   +        L  LD+SFN +   +S +   L+QL  L   ++NL       ++
Sbjct: 360 SFKGCCSQSDF-GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 305 SNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP-SLKNCSMMDSLDL 363
            ++ +L  LD+S+             L S+  L +  N       P        +  LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 364 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPP 423
              QL    P     S+ SL +L +  N F          L +L +LD S N++      
Sbjct: 478 SQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 424 CVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG 475
            + +F               SL  +                  +L+ N+ + 
Sbjct: 537 ELQHF-------------PSSLAFL------------------NLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  163 bits (414), Expect = 4e-44
 Identities = 76/433 (17%), Positives = 141/433 (32%), Gaps = 34/433 (7%)

Query: 16  SSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSS 74
             L   L+L  N +N   P +   +  L  L L +N    ++    I  L  L+   L  
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 75  NQMNGKFPENFGQLSA--------VEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQ 124
            +   +        SA        +E   L+   +        F  L+N+   +L     
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 125 SENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPD 184
                  +N        F    + + +C+ G      L++   L  L   + +  +   +
Sbjct: 295 ERVKDFSYN--------FGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSE 343

Query: 185 WFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA---TVDLSSNSFEGPLPLWSF--NVTK 239
                  +L+ LD++ N LS     S           +DLS N        +     +  
Sbjct: 344 VDLP---SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
           L  + ++            +  L  LDIS      + +     L  L  L ++ N+    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 300 I-PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM 358
             P +++ + +L  LD+S   L    P +  SL S++ L + +N+         K  + +
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE--LCKLPALHILDLSHNN 416
             LD   N +  +    +     SL+ L L  N F  T   +  L  +     L +    
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

Query: 417 LSGIIPPCVGNFS 429
           +    P       
Sbjct: 581 MECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (334), Expect = 2e-33
 Identities = 51/359 (14%), Positives = 110/359 (30%), Gaps = 22/359 (6%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
           L    N ++ E      +    D+      L N+    L   +               + 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQH 308

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENIS 129
           L L + +           L     L  + N+     +     +L +L+ L L++    +S
Sbjct: 309 LELVNCKFGQFPTLKLKSLK---RLTFTSNKGGNAFS---EVDLPSLEFLDLSRN--GLS 360

Query: 130 LIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQL 189
                S        L ++++    +     +      +L  L   +  +        +  
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 190 DLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGPLPLWSF----NVTKLYLR 243
              L  LD+++     +          +   + ++ NSF+       F    N+T L L 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 244 DNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRL 303
                   P  F   +  L  L++S N+     +     L  L  L  S N++     + 
Sbjct: 479 QCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 304 WSNI-SSLYILDMSNNSLSGEIPES--IGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
             +  SSL  L+++ N  +        +  +   R L++    +    P   +   ++ 
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 5e-28
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 4/174 (2%)

Query: 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319
               +LD+SFN L    S S  +  +L  L +S   +       + ++S L  L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGES 379
           +      +   L S++ L+    +++      + +   +  L++  N +          +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 380 MPSLSILRLRSNYFNGTIPPELCKLPALHI----LDLSHNNLSGIIPPCVGNFS 429
           + +L  L L SN        +L  L  + +    LDLS N ++ I P       
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  190 bits (485), Expect = 4e-54
 Identities = 90/491 (18%), Positives = 159/491 (32%), Gaps = 61/491 (12%)

Query: 13  CTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYL 72
             +   L+ L L  N L     ++L   K L++L              + N   L+ LYL
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 73  SSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIF 132
            SN ++            ++VLD   N    +  E    +L     L+LN    +I+   
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIA--- 192

Query: 133 NISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQT--ELTTLVLNNVRISDTIPDWFWQL- 189
            I            +N    Q        L+N T   L      ++   D  P  F  L 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 190 DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSG 249
           +++++ +++  +       N+                          + +L L     S 
Sbjct: 253 EMSVESINLQKHYFFNISSNTFH--------------------CFSGLQELDLTATHLSE 292

Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEI-PRLWSNIS 308
            +P      +  L  L +S N        S  N   L  L I  N    E+      N+ 
Sbjct: 293 -LPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 309 SLYILDMSNNSL--SGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 366
           +L  LD+S++ +  S      + +L  ++ L L  N        + K C  ++ LDL   
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVG 426
           +L         +++  L +L L  +  + +       LPAL  L+L  N+          
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 427 NFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIH 486
           +   +             L++                  + LS  +LS       T L  
Sbjct: 471 SLQTLG-----------RLEI------------------LVLSFCDLSSIDQHAFTSLKM 501

Query: 487 LGTLNLSRNHL 497
           +  ++LS N L
Sbjct: 502 MNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (402), Expect = 2e-42
 Identities = 77/424 (18%), Positives = 148/424 (34%), Gaps = 22/424 (5%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNS-FVGSIPPSIGNLTFLK 68
           L +   +  L+ L+   N ++      +  L+    L L  N   +  I P   +    +
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 69  ELYLSSNQMNGKFPEN--FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
            L     Q      +      + ++ +    +   E I +   F  L  +   ++N Q  
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI-SPAVFEGLCEMSVESINLQKH 264

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
               I + + H      L  +++ +  L  + P+ L   + L  LVL+  +  +      
Sbjct: 265 YFFNISSNTFHCFS--GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSFEG-PLPLWSF----NVTK 239
                +L  L +  N     +             +DLS +  E             ++  
Sbjct: 322 SNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI-CNLQQLLTLVISNNNLSG 298
           L L  N         F +  P L  LD++F  L    ++S   NL  L  L +S++ L  
Sbjct: 381 LNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 299 EIPRLWSNISSLYILDMSNNSLSGEIPESIGS---LLSVRFLILCNNHISGEVPPSLKNC 355
              +L+  + +L  L++  N       +   S   L  +  L+L    +S     +  + 
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
            MM+ +DL  N+L+          +  +  L L SN+ +  +P  L  L     ++L  N
Sbjct: 500 KMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 416 NLSG 419
            L  
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  144 bits (364), Expect = 2e-37
 Identities = 79/403 (19%), Positives = 142/403 (35%), Gaps = 57/403 (14%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           +E + L  +       ++      L+ L+L        +P  +  L+ LK+L LS+N+  
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFE 314

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
                +     ++  L +  N     +      NL NL+EL L   S +           
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL---SHD----------- 360

Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
                +   +             LRN + L +L L+         + F +    L+ LD+
Sbjct: 361 ----DIETSDCC--------NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDL 407

Query: 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQK 258
           A+  L      S               F+         +  L L  +       + F   
Sbjct: 408 AFTRLKVKDAQSP--------------FQNL-----HLLKVLNLSHSLLDISSEQLF-DG 447

Query: 259 IPFLTDLDISFNSL---NGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM 315
           +P L  L++  N     N   + S+  L +L  LV+S  +LS      ++++  +  +D+
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW 375
           S+N L+    E++  L  +  L L +NHIS  +P  L   S   +++L  N L       
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC--- 563

Query: 376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418
              ++  L   +        T        P L  + LS   LS
Sbjct: 564 --SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (289), Expect = 2e-27
 Identities = 45/282 (15%), Positives = 87/282 (30%), Gaps = 9/282 (3%)

Query: 218 TVDLSSNSFEG-PLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV 276
           T +  +      P  L   +   L    N         F + +  LT LD++   +    
Sbjct: 16  TYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIH 73

Query: 277 SKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336
             +  +  +L TLV++ N L        S   +L  L      +S      + +  ++  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY-FNG 395
           L L +NHIS    P       +  LD  +N +       +  S+   + L L  N     
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIA 192

Query: 396 TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV 455
            I P          L+        +I           ++      +E      +  + + 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFK---GLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 456 FYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
               + + ++ +L  +               L  L+L+  HL
Sbjct: 250 GLCEMSVESI-NLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSI---PPSIGN 63
            D  S   N  LL+ L L  + L+         L  L++L L  N F         S+  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 64  LTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123
           L  L+ L LS   ++      F  L  +  +DLS N+    +T +    LS+LK + LN 
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR----LTSSSIEALSHLKGIYLNL 530

Query: 124 QSENISLIFNISSHWIPPFKLTFINIR------SCQLGPKFPTWLRNQT 166
            S +IS+I  + S      +   IN+R      +C     F  W +   
Sbjct: 531 ASNHISII--LPSLLPILSQQRTINLRQNPLDCTCSNIY-FLEWYKENM 576

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  187 bits (477), Expect = 9e-52
 Identities = 62/440 (14%), Positives = 138/440 (31%), Gaps = 62/440 (14%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
            +    +   E     + +   +   S   LK+L  +EL++   +  +P  + +L  L+ 
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 70  LYLSSNQMNG---------KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
           L ++ N+            +  ++      +++  +  N  E        + +  L  L 
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 121 LNKQSENISLIFNISSHWIPPF----KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV 176
                 N      +    +  F    KLT + +   Q+      +     ++  L  ++ 
Sbjct: 580 C---VHN-----KVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629

Query: 177 RISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF 235
           ++   IP+ F    +  +  +D +YN++                    N           
Sbjct: 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGS---------------EGRNISCSMDDYKGI 673

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSL-------NGSVSKSICNLQQLLT 288
           N + + L  N         F      ++ + +S N +             +  N   L T
Sbjct: 674 NASTVTLSYNEIQKFPTELFA-TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 289 LVISNNNLSGEIPR--LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL------ILC 340
           + +  N L+  +      + +  L  +D+S N  S   P    +   ++           
Sbjct: 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 400
            N I  + P  +  C  +  L +G N +   +   +    P L IL +  N         
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL---TPQLYILDIADNPNISIDVTS 846

Query: 401 LCKLPALHILDLSHNNLSGI 420
           +C      +  L ++    I
Sbjct: 847 VCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (444), Expect = 2e-47
 Identities = 83/526 (15%), Positives = 161/526 (30%), Gaps = 53/526 (10%)

Query: 1   GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
           G+   +  G    T  SL        +         L     +  L L      G +P +
Sbjct: 283 GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 61  IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
           IG LT LK L   ++           +    ++ +  +++      +        L    
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 121 L-NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
           L          +  I        K T I   + ++       ++  T+L  +   N   +
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFT 461

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGPLPLWSFNV 237
                      +  ++ +  Y +   +   S          V+L +      LP + +++
Sbjct: 462 YDNI------AVDWEDANSDYAKQYENEELSWS-NLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 238 TKL---YLRDNSFSGP---------IPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQ 284
            +L    +  N              +  D     P +    + +N+L     S S+  + 
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDT-GPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 285 QLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLS-VRFLILCNNH 343
           +L  L   +N +   +         L  L +  N +  EIPE   +    V  L   +N 
Sbjct: 574 KLGLLDCVHNKVR-HLEAF-GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630

Query: 344 ISGEVPP--SLKNCSMMDSLDLGDNQLSGNIPAWIGESMP-----SLSILRLRSNYFNGT 396
           +   +P   + K+  +M S+D   N++       I  SM      + S + L  N     
Sbjct: 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVV------LK 450
                     +  + LS+N ++ I    +            + K    L  +      L 
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPK-------DGNYKNTYLLTTIDLRFNKLT 741

Query: 451 G-SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
             S+    TTL  ++ MD+S N  S   P +      L    +   
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (432), Expect = 8e-46
 Identities = 73/518 (14%), Positives = 162/518 (31%), Gaps = 92/518 (17%)

Query: 6   FIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLT 65
             + L+   +     ++ + + ++  D    L    +L    +  N  +  I        
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS-DLLQDAINRNPEMKPIKKDSRISL 425

Query: 66  FLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQS 125
              ++   +N++     +   +L+ ++++  + + +        + + +        KQ 
Sbjct: 426 KDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN----SDYAKQY 480

Query: 126 ENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD----- 180
           EN  L ++          LT + + +C    + P +L +  EL +L +   R        
Sbjct: 481 ENEELSWSNLKD------LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 181 ----TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA---TVDLSSNSFEGPLPLW 233
                + D        +    + YN L    P S   +       +D   N         
Sbjct: 535 ADWTRLADDEDTGP-KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFG 592

Query: 234 SF-NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK-SICNLQQLLTLVI 291
           +   +T L L  N     IP DF      +  L  S N L    +  +  ++  + ++  
Sbjct: 593 TNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 292 SNNNLSGEIPRLWSNIS-----SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS- 345
           S N +  E   +  ++      +   + +S N +     E   +   +  +IL NN ++ 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 346 ------GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
                      + KN  ++ ++DL  N+L+     +   ++P LS + +  N F+ + P 
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPT 770

Query: 400 ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTT 459
           +      L    + H                                             
Sbjct: 771 QPLNSSQLKAFGIRHQ-------------------------------------------- 786

Query: 460 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                  D   N +  + P  +T    L  L +  N +
Sbjct: 787 ------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (426), Expect = 9e-46
 Identities = 101/524 (19%), Positives = 167/524 (31%), Gaps = 65/524 (12%)

Query: 17  SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQ 76
           S L+ L+L   ++      +   L +L  L L  N      P S   LT L+ L     +
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--------------- 121
           +        GQL  ++ L+++ N         +F NL+NL  + L               
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 122 --NKQSENISL------IFNISSHWIPPFKLTFINIRSCQLGPKFP-------TWLRNQT 166
                  N+SL      I  I        KL  + +R                  L    
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 167 ELTTLVLNNVRISDTIPDWFWQL-DLTLDELDVAYNELSGSIPNSL-GFRFPATVDLSSN 224
            +     +   +    P     L D+T+DE  + Y                 + + L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 225 SFEGPLPL-WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNL 283
           S +    +   F    L +           D     PFL  L ++ N    S+S     L
Sbjct: 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTMNKG--SISFKKVAL 349

Query: 284 QQLLTLVISNNNLSGEIPRLWSNI--SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN 341
             L  L +S N LS      +S++  +SL  LD+S N     +  +   L  ++ L   +
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQH 408

Query: 342 NHISGEVPPS-LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 400
           + +      S   +   +  LD+            I   + SL+ L++  N F       
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 401 -LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVV------LKGSE 453
                  L  LDLS   L  I     G F  +             LQ++      L   +
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISW---GVFDTLH-----------RLQLLNMSHNNLLFLD 513

Query: 454 YVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              Y  LY ++ +D S N +     +       L   NL+ N +
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  154 bits (390), Expect = 7e-41
 Identities = 91/509 (17%), Positives = 158/509 (31%), Gaps = 63/509 (12%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
            + ++L FN L      S      L++L+L           +   L  L  L L+ N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
              P +F  L+++E L   E +   + +      L  LK+L +   + N      I S  
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNV---AHN-----FIHSCK 144

Query: 139 IPPF-----KLTFINIRSCQL----GPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQL 189
           +P +      L  +++    +             N     +L ++   I       F  +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

Query: 190 DLTLDELDVAYNELSGSIPNSLGFRFPAT--VDLSSNSFEGPLPLWSFN----------- 236
            L   EL +  N  S +I  +            L    F+    L  F            
Sbjct: 205 KLH--ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296
           + +  L   +        F   +  ++ + ++  S+     + +    +  +L I    L
Sbjct: 263 IDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCS 356
             + P L  ++  L  L ++ N  S  I     +L S+ +L L  N +S     S  +  
Sbjct: 320 K-QFPTL--DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 357 MMD--SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLPALHILDLS 413
                 LDL  N        +    +  L  L  + +             L  L  LD+S
Sbjct: 375 TNSLRHLDLSFNGAIIMSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 414 HNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSL-----QVVLKGSEYVFYTTLYLVNLMDL 468
           + N            + +             L              VF  T  L  L DL
Sbjct: 433 YTNTKIDFDGIFLGLTSLNT-----------LKMAGNSFKDNTLSNVFANTTNLTFL-DL 480

Query: 469 SSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           S   L          L  L  LN+S N+L
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (322), Expect = 9e-32
 Identities = 56/374 (14%), Positives = 115/374 (30%), Gaps = 45/374 (12%)

Query: 4   SDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLEL--WHNSFVGSIPPSI 61
              +  L+      L+         L    PS +  L ++   E    + +         
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 62  GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
             L  +  + L+   +   + E+  +    + L +   Q    + +    +L  LK L L
Sbjct: 282 HCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQ----LKQFPTLDLPFLKSLTL 335

Query: 122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDT 181
                  S+ F   +                               L+ L L+   +S +
Sbjct: 336 T--MNKGSISFKKVAL----------------------------PSLSYLDLSRNALSFS 365

Query: 182 IPDWFWQLDLT-LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF----N 236
               +  L    L  LD+++N       N +G      +D   ++ +      +F     
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI-CNLQQLLTLVISNNN 295
           +  L +   +        F   +  L  L ++ NS   +   ++  N   L  L +S   
Sbjct: 426 LLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           L      ++  +  L +L+MS+N+L          L S+  L    N I           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 356 SMMDSLDLGDNQLS 369
             +   +L +N ++
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 46/288 (15%), Positives = 95/288 (32%), Gaps = 32/288 (11%)

Query: 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS 297
                 D   S  +P D         ++D+SFN L    S S  N  +L  L +S   + 
Sbjct: 14  ITYQCMDQKLSK-VPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM 357
               + W  +  L  L ++ N +    P S   L S+  L+     ++      +     
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHI----LDLS 413
           +  L++  N +          ++ +L  + L  NY       +L  L         LD+S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 414 HNNLSGI------------------------IPPCVGNFSGMKVEPPDSVKYEGSLQVVL 449
            N +  I                        +  C+ N +G+ V      +++    + +
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 450 KGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                +       ++   L+  N   +  V+   L ++  ++L+   +
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  147 bits (372), Expect = 7e-38
 Identities = 103/521 (19%), Positives = 188/521 (36%), Gaps = 72/521 (13%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQM 77
            E+L L FN +     SS  +L+ L+ LEL       +I   +  NL  L+ L L S+++
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 78  NGKFPENFGQLSAVEVLDLSENQ-WEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
               P+ F  L  +  L L      + ++ + +FRNL  L  L L   S+N      +  
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL---SKNQIRSLYLHP 142

Query: 137 HWIPPFKLTFINIRSCQLGPKFPTWLRN--QTELTTLVLNNVRISDTIPDWFWQL----- 189
            +     L  I+  S Q+       L       L+   L    +   +   + +      
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 190 DLTLDELDVAYNELSGSIPN---------------------SLGFRFPATVDLSSNSFEG 228
           ++ L+ LDV+ N  +  I                         GF F    D   N+F G
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 229 PLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLT 288
              L   +V  L L        +     + +  L  L++++N +N    ++   L  L  
Sbjct: 263 ---LARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318

Query: 289 LVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV 348
           L +S N L       +  +  +  +D+  N ++    ++   L  ++ L L +N ++   
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT--- 375

Query: 349 PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-TIPPELCKLPAL 407
             ++     +  + L  N+L       + +   + +++ L  N      I   L ++P L
Sbjct: 376 --TIHFIPSIPDIFLSGNKLVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 408 HILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQV---------VLKGSEYVFYT 458
            IL L+ N  S          S              SL+          +   +E  +  
Sbjct: 429 QILILNQNRFSSC--SGDQTPSENP-----------SLEQLFLGENMLQLAWETELCWDV 475

Query: 459 TLYLVNL--MDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              L +L  + L+ N L+   P   + L  L  L+L+ N L
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  125 bits (316), Expect = 9e-31
 Identities = 94/432 (21%), Positives = 160/432 (37%), Gaps = 59/432 (13%)

Query: 15  NSSLLEKLELGFNQLNG-DLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF--LKELY 71
           N   L +L+L  NQ+    L  S G L +L+ ++   N         +  L    L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 72  LSSNQMNGKFPENFGQLSAV------EVLDLSENQWEGIITETHFRNLSNLKELALNKQS 125
           L++N +  +   ++G+          E+LD+S N W   IT      +S  +  +L    
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 126 ENISLIF---NISSHWIPPFK------LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV 176
             +   F   NI       F       +  +++    +            +L  L L   
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 177 RISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFN 236
           +I+    + F+ LD  L  L+++YN L                +L S++F G LP     
Sbjct: 301 KINKIADEAFYGLD-NLQVLNLSYNLLG---------------ELYSSNFYG-LP----K 339

Query: 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296
           V  + L+ N  +  I     + +  L  LD+  N+L      +I  +  +  + +S N L
Sbjct: 340 VAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393

Query: 297 SGEIPRLWSNISSLYILDMSNNSLSG-EIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
                 L     +  ++ +S N L   +I   +  +  ++ LIL  N  S          
Sbjct: 394 V----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT--P 447

Query: 356 SMMDS---LDLGDNQLSG----NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALH 408
           S   S   L LG+N L       +   + E +  L +L L  NY N   P     L AL 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 409 ILDLSHNNLSGI 420
            L L+ N L+ +
Sbjct: 508 GLSLNSNRLTVL 519

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 54/284 (19%), Positives = 100/284 (35%), Gaps = 30/284 (10%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQM- 77
           L+ L L +N L     S+   L  + Y++L  N        +   L  L+ L L  N + 
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 78  -------------NGKFPENFGQLS-AVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123
                        +G       +++    ++ LSEN+ E +        + +L+ L LN 
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN- 434

Query: 124 QSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWL-----RNQTELTTLVLNNVRI 178
                S      +    P  L  + +    L   + T L        + L  L LN+  +
Sbjct: 435 -QNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 179 SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVT 238
           +   P  F  L   L  L +  N L+  + ++        +D+S N    P P    +++
Sbjct: 493 NSLPPGVFSHLT-ALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550

Query: 239 KLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICN 282
            L +  N F         +   F+  L+ +  ++ G  +   C 
Sbjct: 551 VLDITHNKFICEC-----ELSTFINWLNHTNVTIAGPPADIYCV 589

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 19/181 (10%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI---- 61
           +D L        L+ L L  N+ +            +L  L L  N    +    +    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 62  -GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
              L+ L+ LYL+ N +N   P  F  L+A+  L L+ N+   +       NL  L +++
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL-DIS 534

Query: 121 LNKQSENISLIFNISSHWIPPFKLTFIN----IRSCQLGPKFPTWLRNQTELTTLVLNNV 176
            N+       +   +        +  I     I  C+L   F  WL +          ++
Sbjct: 535 RNQ-------LLAPNPDVFVSLSVLDITHNKFICECELST-FINWLNHTNVTIAGPPADI 586

Query: 177 R 177
            
Sbjct: 587 Y 587

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (358), Expect = 1e-36
 Identities = 79/415 (19%), Positives = 142/415 (34%), Gaps = 24/415 (5%)

Query: 19  LEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLK----ELYLS 73
           L++L +  N +    LP     L NL +L+L  N         +  L  +      L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 74  SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL----NKQSENIS 129
            N MN   P  F ++  +  L L  N     + +T  + L+ L+   L     +   N+ 
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 130 LIFNISSHWIPPFKLTFINIRSCQL-GPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188
                +   +    +    +                 T +++  L +V I       +  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDNSF 247
               L+ ++  + +       SL       +  +SN            ++  L L  N  
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 248 SG-PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR-LWS 305
           S              L  LD+SFN +  ++S +   L+QL  L   ++NL       ++ 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 306 NISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP-SLKNCSMMDSLDLG 364
           ++ +L  LD+S+             L S+  L +  N       P        +  LDL 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLPALHILDLSHNNLS 418
             QL   +      S+ SL +L + SN    ++P     +L +L  + L  N   
Sbjct: 479 QCQLEQ-LSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  140 bits (355), Expect = 2e-36
 Identities = 86/498 (17%), Positives = 156/498 (31%), Gaps = 60/498 (12%)

Query: 17  SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQ 76
             L+ L+L   ++      +   L +L  L L  N        +   L+ L++L      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSENISLIFNI 134
           +        G L  ++ L+++ N  +      +F NL+NL+ L L  NK          +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 135 SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ------ 188
                 P     +++    +          +  L  L L N   S  +     Q      
Sbjct: 172 LHQM--PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 189 -LDLTLDELDVAYN--ELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF----NVTKLY 241
              L L E     N  +   S    L         L+   +     +  F    NV+   
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP 301
           L   +        +      L  ++  F             L+ L  L  ++N       
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAFS 342

Query: 302 RLWSNISSLYILDMSNNSLS--GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
            +  ++ SL  LD+S N LS  G   +S     S+++L L  N +   +  +      ++
Sbjct: 343 EV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
            LD   + L       +  S+ +L  L +   +           L +L +L ++ N+   
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
              P    F+ ++           +L  +                  DLS   L    P 
Sbjct: 460 NFLP--DIFTELR-----------NLTFL------------------DLSQCQLEQLSPT 488

Query: 480 ELTRLIHLGTLNLSRNHL 497
               L  L  LN++ N L
Sbjct: 489 AFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 47/241 (19%), Positives = 89/241 (36%), Gaps = 8/241 (3%)

Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321
             +LD+SFN L    S S  +  +L  L +S   +       + ++S L  L ++ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381
                +   L S++ L+    +++      + +   +  L++  N +          ++ 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 382 SLSILRLRSNYFNGTIPPELCKLPALHI----LDLSHNNLSGIIPPCVGNFSGMKVEPPD 437
           +L  L L SN        +L  L  + +    LDLS N ++ I P   G F  +++    
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP---GAFKEIRLHKLT 206

Query: 438 SVKYEGSLQVVLKGSEYVFYTT-LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNH 496
                 SL V+    + +       LV     +  NL       L  L +L        +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 497 L 497
           L
Sbjct: 267 L 267

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 1e-35
 Identities = 102/416 (24%), Positives = 169/416 (40%), Gaps = 42/416 (10%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           IDG+    N   L ++    NQL     + L  L  L  + + +N      P  + NLT 
Sbjct: 61  IDGVEYLNN---LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L  L L +NQ+     +    L+ +  L+LS N    I        L++L++L+   Q  
Sbjct: 114 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVT 168

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
           ++  + N+++       L  ++I S ++     + L   T L +L+  N +ISD  P   
Sbjct: 169 DLKPLANLTT-------LERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--L 217

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDN 245
             L   LDEL +  N+L   I           +DL++N      PL     +T+L L  N
Sbjct: 218 GILT-NLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275

Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS 305
             S   P      +  LT+L+++ N L       I NL+ L  L +  NN+S   P   S
Sbjct: 276 QISNISP---LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VS 328

Query: 306 NISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365
           +++ L  L   NN +S     S+ +L ++ +L   +N IS      L N + +  L L D
Sbjct: 329 SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 384

Query: 366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLPALHILDLSHNNLSGI 420
              +            ++SI     N     I P  +    +    D++ N  S  
Sbjct: 385 QAWTNAPV----NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (321), Expect = 4e-32
 Identities = 85/424 (20%), Positives = 161/424 (37%), Gaps = 39/424 (9%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I+ +   T  +   K  LG   +      S   L  +  L+             +  L  
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNN 69

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L ++  S+NQ+          L+ +  + ++ NQ   I       NL+NL  L L   + 
Sbjct: 70  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLF--NN 122

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
            I+ I  + +       L  + + S  +     + L   T L  L   N +++D  P   
Sbjct: 123 QITDIDPLKN----LTNLNRLELSSNTI--SDISALSGLTSLQQLSFGN-QVTDLKP--L 173

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDN 245
             L  TL+ LD++ N++S  I          ++  ++N      PL    N+ +L L  N
Sbjct: 174 ANLT-TLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 231

Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS 305
                        +  LTDLD++ N ++      +  L +L  L +  N +S   P   +
Sbjct: 232 QLKDIGTLA---SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LA 284

Query: 306 NISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365
            +++L  L+++ N L       I +L ++ +L L  N+IS   P  + + + +  L   +
Sbjct: 285 GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340

Query: 366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV 425
           N++S         ++ +++ L    N  +   P  L  L  +  L L+    +       
Sbjct: 341 NKVSDVSSL---ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395

Query: 426 GNFS 429
            N S
Sbjct: 396 ANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.0 bits (237), Expect = 4e-21
 Identities = 79/352 (22%), Positives = 128/352 (36%), Gaps = 40/352 (11%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I  LS  T+   L++L  G    +      L  L  L  L++  N    S    +  LT 
Sbjct: 149 ISALSGLTS---LQQLSFGNQVTD---LKPLANLTTLERLDISSNKV--SDISVLAKLTN 200

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L+ L  ++NQ++       G L+ ++ L L+ NQ + I T     +L+NL +L L     
Sbjct: 201 LESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANN-- 253

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
            IS +  +S       KLT + + + Q+     + L   T LT L LN  ++ D  P   
Sbjct: 254 QISNLAPLSGL----TKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISP--I 305

Query: 187 WQLDLTLDELDVAYNELSGSIP----NSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLY 241
             L   L  L + +N +S   P      L       +   +N       L +  N+  L 
Sbjct: 306 SNLK-NLTYLTLYFNNISDISPVSSLTKL-----QRLFFYNNKVSDVSSLANLTNINWLS 359

Query: 242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP 301
              N  S   P      +  +T L ++  +   +      N+    T+      L    P
Sbjct: 360 AGHNQISDLTPL---ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--AP 414

Query: 302 RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLK 353
              S+  S    D++ N  S    E   +      +       SG V   LK
Sbjct: 415 ATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPLK 465

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 57/279 (20%), Positives = 103/279 (36%), Gaps = 54/279 (19%)

Query: 220 DLSSNSFEGPLPLWSF-NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK 278
            L   +    +       VT L                + +  LT ++ S N L      
Sbjct: 30  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGV---EYLNNLTQINFSNNQLTDI--T 84

Query: 279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI 338
            + NL +L+ ++++NN ++   P   +N+++L  L + NN ++   P  + +L ++  L 
Sbjct: 85  PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398
           L +N IS     +L   + +  L  G NQ++   P     ++ +L  L + SN    +  
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKPL---ANLTTLERLDISSNKV--SDI 192

Query: 399 PELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYT 458
             L KL  L  L  ++N +S I P        +                           
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP-----LGILT-------------------------- 221

Query: 459 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              L  L  L+ N L       L  L +L  L+L+ N +
Sbjct: 222 --NLDEL-SLNGNQLKD--IGTLASLTNLTDLDLANNQI 255

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (326), Expect = 2e-32
 Identities = 87/431 (20%), Positives = 161/431 (37%), Gaps = 35/431 (8%)

Query: 16  SSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSN 75
           ++ ++ L+L FN++       L    NL+ L L  +        +  +L  L+ L LS N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 76  QMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNIS 135
            ++      FG LS+++ L+L  N ++ +   + F NL+NL+ L +    E  S I  I 
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG-NVETFSEIRRID 143

Query: 136 SHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDE 195
              +    L  + I++  L       L++  ++  L L+    +  +  +   L  ++  
Sbjct: 144 FAGLT--SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS-SVRY 200

Query: 196 LDVAYNELSG------------SIPNSLGFRFPATVDLSSN----SFEGPLPLWSFNVTK 239
           L++    L+             S    L FR     D S N         L L       
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 240 LYLRDNSFSGPIPRDFGQKIPF-----LTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294
             L       P   D   ++       +  L I    L   +S     L+++  + + N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPES---IGSLLSVRFLILCNNHIS--GEVP 349
            +         ++ SL  LD+S N +  E  ++    G+  S++ L+L  NH+    +  
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 350 PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHI 409
             L     + SLD+  N       +        +  L L S      +   +     L +
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMPDSCQW--PEKMRFLNLSSTGIR-VVKTCI--PQTLEV 435

Query: 410 LDLSHNNLSGI 420
           LD+S+NNL   
Sbjct: 436 LDVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (304), Expect = 1e-29
 Identities = 79/443 (17%), Positives = 159/443 (35%), Gaps = 53/443 (11%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVG-SIPPSIGNLTFLKELYLSSNQM 77
           LE L+L  N L+    S  G L +L+YL L  N +    +     NLT L+ L + + + 
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 78  NGKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
             +     F  L+++  L++         +++  +++ ++  L L+      + +  I +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLH--LSESAFLLEIFA 192

Query: 137 HWIPPFK-LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQL------ 189
             +   + L   +    +            + +  L      ++D   +   +L      
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 190 -------DLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGPLPLWSF---NV 237
                  D TL+ L       S  +             + +        L         V
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV---SKSICNLQQLLTLVISNN 294
            ++ + ++     +P  F Q +  L  LD+S N +       S        L TLV+S N
Sbjct: 313 KRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 295 NLS--GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS---GEVP 349
           +L    +   +   + +L  LD+S N+    +P+S      +RFL L +  I      +P
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430

Query: 350 PSLK-----NCSMMD---------SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395
            +L+     N ++            L +  N+L   +P       P L ++++  N    
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLK- 486

Query: 396 TIPPE-LCKLPALHILDLSHNNL 417
           ++P     +L +L  + L  N  
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (251), Expect = 1e-22
 Identities = 78/451 (17%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
           SIP  +     +K L LS N++      +    + ++VL L  ++   I  +  F +L +
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGS 75

Query: 116 LKELALNKQSENISLIFNISSHWIPPF-KLTFINIRSCQLGP-KFPTWLRNQTELTTLVL 173
           L+ L L   S+N   + ++SS W  P   L ++N+           +   N T L TL +
Sbjct: 76  LEHLDL---SDN--HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 174 NNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG-FRFPATVDLSSNSFEGPLPL 232
            NV     I    +    +L+EL++    L      SL   R    + L  +     L +
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 233 ---WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTL 289
                 +V  L LRD + +              + +       +    +S   L +LL  
Sbjct: 191 FADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 290 VISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP 349
           ++  + +       + + +   + D + +             +++R L +   ++  ++ 
Sbjct: 250 ILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 350 PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE---LCKLPA 406
                   +  + + ++++   +P    + + SL  L L  N                P+
Sbjct: 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 407 LHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLM 466
           L  L LS N+L   +         +K           +L  +                  
Sbjct: 363 LQTLVLSQNHLR-SMQKTGEILLTLK-----------NLTSL------------------ 392

Query: 467 DLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           D+S N     MP        +  LNLS   +
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 49/282 (17%), Positives = 101/282 (35%), Gaps = 47/282 (16%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           + +L +    L  DL +    L+ ++ + + ++           +L  L+ L LS N M 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 79  GKFPEN---FGQLSAVEVLDLSENQWEGIITETH-FRNLSNLKELALNKQSENISLIFNI 134
            ++ +N    G   +++ L LS+N    +         L NL  L +   S N      +
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI---SRN--TFHPM 402

Query: 135 SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-L 193
                 P K+ F+N+ S  +        +    L  L ++N  +        + L L  L
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNLDS------FSLFLPRL 453

Query: 194 DELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPR 253
            EL ++ N+L  ++P++  F                       +  + +  N     +P 
Sbjct: 454 QELYISRNKLK-TLPDASLFP---------------------VLLVMKISRNQLKS-VPD 490

Query: 254 DFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
               ++  L  + +  N  + S     C     L+  ++ N+
Sbjct: 491 GIFDRLTSLQKIWLHTNPWDCS-----CPRIDYLSRWLNKNS 527

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 26/198 (13%)

Query: 308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ 367
            +  + D  + S +  IP  +    +++ L L  N I+      L+ C+ +  L L  ++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 368 LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLPALHILDLSHNNLSGIIPPCVG 426
           ++  I      S+ SL  L L  N+ + ++       L +L  L+L  N    +      
Sbjct: 62  IN-TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVT--S 117

Query: 427 NFSGMKVEPPDSVKYEGSLQVV-------LKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
            F  +            +LQ +             + +  L  +N +++ + +L      
Sbjct: 118 LFPNLT-----------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 480 ELTRLIHLGTLNLSRNHL 497
            L  +  +  L L  +  
Sbjct: 167 SLKSIRDIHHLTLHLSES 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (317), Expect = 2e-32
 Identities = 81/401 (20%), Positives = 143/401 (35%), Gaps = 57/401 (14%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
              L      +N   P     L       L   S    +      L  + +L ++  ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
               +    L+ +E L+L+ NQ   I        LSNL                      
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDIS------PLSNLV--------------------- 88

Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
               KLT + I + ++     + L+N T L  L LN   ISD  P     L   +  L++
Sbjct: 89  ----KLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLT-KMYSLNL 139

Query: 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDNSFSGPIPRDFGQ 257
             N     +           + ++ +  +   P+ +  ++  L L  N      P     
Sbjct: 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP---LA 196

Query: 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN 317
            +  L       N +       + N+ +L +L I NN ++   P   +N+S L  L++  
Sbjct: 197 SLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG 377
           N +S     ++  L  ++ L + +N IS      L N S ++SL L +NQL       IG
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 378 ESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418
             + +L+ L L  N+     P  L  L  +   D ++  + 
Sbjct: 309 -GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 8e-24
 Identities = 70/347 (20%), Positives = 136/347 (39%), Gaps = 52/347 (14%)

Query: 162 LRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGFRFPATVD 220
             +  E    VL    ++D +     Q +L  + +L VA  +++ SI           ++
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT----QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLN 72

Query: 221 LSSNSFEGPLPLWSF-NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
           L+ N      PL +   +T LY+  N  +        Q +  L +L ++ ++++      
Sbjct: 73  LNGNQITDISPLSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNISDI--SP 127

Query: 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
           + NL ++ +L +  N+   ++  L SN++ L  L ++ + +    P  I +L  +  L L
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
             N I       L + + +       NQ++   P     +M  L+ L++ +N      P 
Sbjct: 185 NYNQIED--ISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP- 238

Query: 400 ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTT 459
            L  L  L  L++  N +S I          +             L+++      V    
Sbjct: 239 -LANLSQLTWLEIGTNQISDINA-----VKDLT-----------KLKML-----NVGSNQ 276

Query: 460 L-------YLVNL--MDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           +        L  L  + L++N L  E    +  L +L TL LS+NH+
Sbjct: 277 ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.4 bits (246), Expect = 7e-23
 Identities = 70/339 (20%), Positives = 125/339 (36%), Gaps = 70/339 (20%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I  +S  +N   L  L +G N++     S+L  L NLR L L  ++     P  + NLT 
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTK 133

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           +  L L +N  N         ++ +  L ++E++ + +       NL++L  L+L   + 
Sbjct: 134 MYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSL---NY 186

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
           N      I    I P                      + T L        +I+D  P   
Sbjct: 187 N-----QIED--ISPLA--------------------SLTSLHYFTAYVNQITDITP--V 217

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS 246
             +   L+ L +  N+++   P            L++ S           +T L +  N 
Sbjct: 218 ANMT-RLNSLKIGNNKITDLSP------------LANLS----------QLTWLEIGTNQ 254

Query: 247 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSN 306
            S          +  L  L++  N ++      + NL QL +L ++NN L  E   +   
Sbjct: 255 ISDINA--VKD-LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 307 ISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS 345
           +++L  L +S N ++   P  + SL  +      N  I 
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 13/162 (8%)

Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321
              L      +N        +L + +  V+   +++  +      + S+  L ++   ++
Sbjct: 2   AATLATLPAPIN--QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381
               + I  L ++ +L L  N I+      L N   + +L +G N+++ +I A   +++ 
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT-DISAL--QNLT 110

Query: 382 SLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPP 423
           +L  L L  +  +      L  L  ++ L+L  N+    + P
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 1e-28
 Identities = 56/412 (13%), Positives = 113/412 (27%), Gaps = 70/412 (16%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSS 74
           N +  +  ++  + L   L S      N++ L+L  N         +   T L+ L LSS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNI 134
           N +      +   LS +  LDL+ N     + E       +++ L     + N       
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNY----VQE--LLVGPSIETLHA---ANN------- 109

Query: 135 SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLD 194
                    ++ ++    Q                 + L N +I+             + 
Sbjct: 110 --------NISRVSCSRGQ-------------GKKNIYLANNKITMLRDLDEGCR-SRVQ 147

Query: 195 ELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRD 254
            LD+  NE+                 ++              +  L L+ N     +   
Sbjct: 148 YLDLKLNEID---------------TVNFAELAASSD----TLEHLNLQYNFIYD-VKGQ 187

Query: 255 FGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD 314
                  L  LD+S N L   +     +   +  + + NN L   I +      +L   D
Sbjct: 188 VV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA 374
           +  N           S    R   +    +      + + C++      G          
Sbjct: 244 LRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 375 WIGE----SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
           +            ++L  + +     +  E         +D        +I 
Sbjct: 303 FADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVID 353

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (258), Expect = 7e-24
 Identities = 63/444 (14%), Positives = 129/444 (29%), Gaps = 74/444 (16%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
           +I     N    K   ++ + +             V+ LDLS N    I         + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTK 59

Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN 175
           L+ L L   S N      +                             + + L TL LNN
Sbjct: 60  LELLNL---SSN-----VLYE--TLDL--------------------ESLSTLRTLDLNN 89

Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF 235
             + +        +  +++ L  A N +S                +S +  +        
Sbjct: 90  NYVQE------LLVGPSIETLHAANNNIS---------------RVSCSRGQ-------- 120

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNN 294
               +YL +N  +     D G     +  LD+  N ++  + ++   +   L  L +  N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN 354
            +  ++       + L  LD+S+N L+  +     S   V ++ L NN +   +  +L+ 
Sbjct: 180 FIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 355 CSMMDSLDLGDNQLS-GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS 413
              ++  DL  N    G +  +  ++     +  +              +     +    
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKN---QRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 414 HNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNL 473
                 +  P       +K +    +  +GS    L+           +    D      
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI----DALKEQY 348

Query: 474 SGEMPVELTRLIHLGTLNLSRNHL 497
              +     R     TL   +  L
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.4 bits (245), Expect = 3e-22
 Identities = 48/342 (14%), Positives = 111/342 (32%), Gaps = 23/342 (6%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           +    +  + S L  L+L  N +       L    ++  L   +N+    +  S      
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSCSR--GQG 121

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
            K +YL++N++      + G  S V+ LDL  N+ + +       +   L+ L L     
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL---QY 178

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
           N   I+++    +   KL  +++ S +L        ++   +T + L N ++   I    
Sbjct: 179 N--FIYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS 246
                 L+  D+  N            +      ++  + +          T   L    
Sbjct: 234 RFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 247 --FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI----CNLQQLLTLVISNNNLSGEI 300
                 +P  F  ++  L   + +  S  GS ++ +     N  +   +          I
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN 342
            ++     +   L+    +L  ++     +   +   +    
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (285), Expect = 4e-28
 Identities = 62/364 (17%), Positives = 123/364 (33%), Gaps = 47/364 (12%)

Query: 54  VGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNL 113
           +GS      + +  + LY   +     + +   Q       D +        +     N 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANS 55

Query: 114 SNLKELALNKQS--ENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTL 171
           +N +      ++      L+ + +           + +RS  L P+FP      + L  +
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQP-----GRVALELRSVPL-PQFPDQAFRLSHLQHM 109

Query: 172 VLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLP 231
            ++   +   +PD   Q    L+ L +A N L  ++P S+         L+         
Sbjct: 110 TIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIA-------SLN--------- 150

Query: 232 LWSFNVTKLYLRDNSFSGPIPRDFGQKIPF--------LTDLDISFNSLNGSVSKSICNL 283
                + +L +R       +P                 L  L + +  +  S+  SI NL
Sbjct: 151 ----RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205

Query: 284 QQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
           Q L +L I N+ LS  +     ++  L  LD+   +     P   G    ++ LIL +  
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCK 403
               +P  +   + ++ LDL        +P+ I   +P+  I+ +  +            
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQHRPVA 323

Query: 404 LPAL 407
            PA 
Sbjct: 324 RPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (266), Expect = 1e-25
 Identities = 52/334 (15%), Positives = 100/334 (29%), Gaps = 44/334 (13%)

Query: 109 HFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL 168
           H  + S  + L     +        +S       +    +               N    
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQ----RHYNADRNRWHS----AWRQANSNNP 58

Query: 169 TTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG 228
                    +  T              L++    L    P+           LS      
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF-------RLS------ 104

Query: 229 PLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLT 288
                  ++  + +        +P    Q    L  L ++ N L  ++  SI +L +L  
Sbjct: 105 -------HLQHMTIDAAGLME-LPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 289 LVISNNNLSGEIP---------RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
           L I       E+P              + +L  L +    +   +P SI +L +++ L +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
            N+ +S  + P++ +   ++ LDL       N P   G     L  L L+      T+P 
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPL 271

Query: 400 ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKV 433
           ++ +L  L  LDL        +P  +       +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 3e-25
 Identities = 45/355 (12%), Positives = 96/355 (27%), Gaps = 31/355 (8%)

Query: 31  GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSA 90
           G       +      L    ++ +      +           +               + 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSNN 57

Query: 91  VEVLDLSENQWEGIITETHFRNLSNLKELALNKQS-ENI-SLIFNISSHWIPPFKLTFIN 148
            ++   +    +                L L            F +S        L  + 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH-------LQHMT 110

Query: 149 IRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIP 208
           I +  L  + P  ++    L TL L    +   +P     L+  L EL +        +P
Sbjct: 111 IDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-RLRELSIRACPELTELP 167

Query: 209 NSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDIS 268
             L           ++     L     N+  L L        +P      +  L  L I 
Sbjct: 168 EPLA-------STDASGEHQGLV----NLQSLRLEWTGIRS-LPASIAN-LQNLKSLKIR 214

Query: 269 FNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI 328
            + L+ ++  +I +L +L  L +         P ++   + L  L + + S    +P  I
Sbjct: 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 329 GSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSL 383
             L  +  L L        +P  +        + +  +  +  +      + P+ 
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA-QLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 1e-23
 Identities = 54/315 (17%), Positives = 97/315 (30%), Gaps = 49/315 (15%)

Query: 192 TLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPI 251
             + L    +       + L  ++    +   N +       + N  ++  R        
Sbjct: 13  GRENLYFQGSTALRPYHDVLS-QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71

Query: 252 PRDFGQ-KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
                    P    L++    L          L  L  + I    L  E+P      + L
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGL 129

Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDS---------L 361
             L ++ N L   +P SI SL  +R L +       E+P  L +               L
Sbjct: 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 362 DLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGII 421
            L    +  ++PA I   + +L  L++R++  +  + P +  LP L  LDL         
Sbjct: 189 RLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 422 PPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVEL 481
           PP  G  + +K                                 + L   +    +P+++
Sbjct: 246 PPIFGGRAPLKR--------------------------------LILKDCSNLLTLPLDI 273

Query: 482 TRLIHLGTLNLSRNH 496
            RL  L  L+L    
Sbjct: 274 HRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 4e-18
 Identities = 46/292 (15%), Positives = 85/292 (29%), Gaps = 70/292 (23%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           L+ + +    L  +LP ++     L  L L  N    ++P SI +L  L+EL + +    
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
            + PE      A                      L NL+ L                   
Sbjct: 164 TELPEPLASTDASGEHQ----------------GLVNLQSL------------------- 188

Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
                     +    +    P  + N   L +L + N  +S  +      L   L+ELD+
Sbjct: 189 ---------RLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP-KLEELDL 236

Query: 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQK 258
                  + P   G         +              + +L L+D S    +P D  + 
Sbjct: 237 RGCTALRNYPPIFG-------GRA-------------PLKRLILKDCSNLLTLPLDIHR- 275

Query: 259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
           +  L  LD+        +   I  L     +++  +  +           + 
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 35/238 (14%)

Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321
             +L    ++        +   Q+      +  + +        N ++  I   +  +L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK 69

Query: 322 GEIPESIGSL--LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGES 379
               + +          L L +  +  + P      S +  + +    L   +P  +   
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-Q 125

Query: 380 MPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSV 439
              L  L L  N     +P  +  L  L  L +        +P  + +      +     
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-----TDASGEH 179

Query: 440 KYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           +   +LQ                   + L    +   +P  +  L +L +L +  + L
Sbjct: 180 QGLVNLQS------------------LRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 6e-27
 Identities = 67/388 (17%), Positives = 136/388 (35%), Gaps = 53/388 (13%)

Query: 13  CTNSSLLEKLELGFNQLNGDLPSSLG-----YLKNLRYLELWHNSFVGSIPPSI-GNLTF 66
           C +S+L          ++              L N + +   +++    +P ++  +   
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           ++ L L+  Q+       F     ++ L +  N     +    F+N+  L  L L     
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL---ER 126

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
           N                L+ +                N  +LTTL ++N  +     D F
Sbjct: 127 N---------------DLSSLPRGI----------FHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS 246
                +L  L ++ N L+  +  SL        ++S N            V +L    NS
Sbjct: 162 QATT-SLQNLQLSSNRLT-HVDLSL-IPSLFHANVSYNLLSTLAIP--IAVEELDASHNS 216

Query: 247 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSN 306
            +  +      +   LT L +  N+L  + +  + N   L+ + +S N L   +   +  
Sbjct: 217 INV-VRGPVNVE---LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270

Query: 307 ISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 366
           +  L  L +SNN L   +      + +++ L L +NH+   V  +      +++L L  N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 367 QLSGNIPAWIGESMPSLSILRLRSNYFN 394
            +   +      +  +L  L L  N ++
Sbjct: 329 SIV-TLKL---STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (252), Expect = 2e-23
 Identities = 62/388 (15%), Positives = 130/388 (33%), Gaps = 67/388 (17%)

Query: 33  LPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVE 92
           + S+L Y      + +   +           L   K +   ++ M             VE
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 93  VLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSC 152
           +L+L++ Q E I T   F     +++L +          FN          + ++     
Sbjct: 73  LLNLNDLQIEEIDTYA-FAYAHTIQKLYMG---------FN---------AIRYLP---- 109

Query: 153 QLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG 212
                 P   +N   LT LVL    +S      F      L  L ++ N L         
Sbjct: 110 ------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLE-------- 154

Query: 213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSL 272
                   +  ++F+        ++  L L  N  +             L   ++S+N L
Sbjct: 155 -------RIEDDTFQA-TT----SLQNLQLSSNRLTHVDLSLIPS----LFHANVSYNLL 198

Query: 273 NGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLL 332
                 ++     +  L  S+N+++  +         L IL + +N+L+ +    + +  
Sbjct: 199 -----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYP 248

Query: 333 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY 392
            +  + L  N +   +         ++ L + +N+L   +  +    +P+L +L L  N+
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNH 306

Query: 393 FNGTIPPELCKLPALHILDLSHNNLSGI 420
               +     +   L  L L HN++  +
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 74/356 (20%), Positives = 131/356 (36%), Gaps = 47/356 (13%)

Query: 156 PKFPTWLRNQTELTTLVLNNV-RISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGF 213
           P++     N          ++   +  +   F  + L     +    + +   +P +L  
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLD 66

Query: 214 RFPA--TVDLSSNSFEGPLPLWSF----NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDI 267
            F     ++L+    E  +  ++F     + KLY+  N+    +P    Q +P LT L +
Sbjct: 67  SFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVL 124

Query: 268 SFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPES 327
             N L+        N  +L TL +SNNNL       +   +SL  L +S+N L+  +   
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-- 181

Query: 328 IGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILR 387
           +  + S+    +  N +S     +L     ++ LD   N ++  +          L+IL+
Sbjct: 182 LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG---PVNVELTILK 232

Query: 388 LRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQV 447
           L+ N    T    L   P L  +DLS+N L  I+      F  M+            L+ 
Sbjct: 233 LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMY---HPFVKMQ-----------RLER 276

Query: 448 V------LKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           +      L            L  L DLS N+L   +     +   L  L L  N +
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVL-DLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           +   +   N   L +++L +N+L   +      ++ L  L + +N  V ++      +  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
           LK L LS N +      N  Q   +E L L  N     I          LK L L+
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLS 347

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
           LS       +E+L+   N +N  +   +     L  L+L HN+   +    + N   L E
Sbjct: 198 LSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVE 252

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
           + LS N++       F ++  +E L +S N+   +    + + +  LK L L+
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLS 303

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 1e-26
 Identities = 80/425 (18%), Positives = 142/425 (33%), Gaps = 34/425 (8%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
              L +  N ++    S +  L  LR L + HN               L+ L LS N++ 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK---QSENISLIFNIS 135
            K          ++ LDLS N ++ +     F N+S LK L L+    +  ++  I +++
Sbjct: 83  -KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 136 SHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELT-TLVLNNVRISDTIPDWFWQLDLTLD 194
              +       + +       + P  L++    +  +V    +    I D   +    L+
Sbjct: 140 ISKV------LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 195 ELDVAYNELSGSIPNSLGFRFPAT------------VDLSSNSFEGPLPL-WSFNVTKLY 241
             ++            L                   ++ + NSF   L L W   V    
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 242 LRDNSFSGPIPRDF----GQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS 297
           + +    G +        G  +  L+   +  +      S        +     + +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS--GEVPPSLKNC 355
                  S IS    LD SNN L+  + E+ G L  +  LIL  N +    ++       
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
             +  LD+  N +S +          SL  L + SN    TI   L   P + +LDL  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 416 NLSGI 420
            +  I
Sbjct: 432 KIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 83/420 (19%), Positives = 163/420 (38%), Gaps = 53/420 (12%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS--IGNLTFLKELYLSSNQ 76
           LE L+L  N+L   +        NL++L+L  N+F  ++P     GN++ LK L LS+  
Sbjct: 71  LEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTH 126

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
           +          L+  +VL +    +         ++ +      +   ++    I ++S 
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 137 HWIPPFKLT----FINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT 192
             +   +L+     +    C         L+   +L+ L LNN+  +      F ++   
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS---FIRILQL 243

Query: 193 LDELDVAYNELSG-SIPNSLGFRFPATV----------DLSSNSFEGPLPLWSFNVTKLY 241
           +    V Y  +S   +   L FR                + S+ F  P        + + 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 242 LRDNSFSG--PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS-- 297
           +++ + SG   +      KI     LD S N L  +V ++  +L +L TL++  N L   
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGEVPPSLKNCS 356
            +I  + + + SL  LD+S NS+S +  +       S+  L + +N ++  +   L    
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421

Query: 357 MMDSLDLGDNQ------------------LSGN----IPAWIGESMPSLSILRLRSNYFN 394
            +  LDL  N+                  ++ N    +P  I + + SL  + L +N ++
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 63/352 (17%), Positives = 119/352 (33%), Gaps = 32/352 (9%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSS 223
            + T L ++   IS+        L   L  L +++N +   +  S+         +DLS 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSK-LRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78

Query: 224 NSFEGPLPLWSF-NVTKLYLRDNSF-SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSIC 281
           N     +      N+  L L  N+F + PI ++FG  +  L  L +S   L  S    I 
Sbjct: 79  NKLVK-ISCHPTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 282 NLQQLLTLVISNNNLSGEIPRL---WSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI 338
           +L     L++       +         N  SL+I+  +N      +  S+ ++ ++    
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 339 L------CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE--SMPSLSILRLRS 390
           +              +   L+    + +L L + + + N    I +     ++    + +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 391 NYFNGTIPPEL-----CKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSL 445
               G +           L AL I  +  +            FS M ++           
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG----T 312

Query: 446 QVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           ++V           L+L    D S+N L+  +      L  L TL L  N L
Sbjct: 313 RMVHMLCPSKISPFLHL----DFSNNLLTDTVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 27/256 (10%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGY-----LKNLRYLELWHNSFVGSIPPSI 61
              + +    + +    +   +L G L           LK L   ++  + F        
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 62  GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
              + +     + +           ++S    LD S N     + E    +L+ L+ L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLIL 355

Query: 122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFP----TWLRNQTELTTLVLNNVR 177
             Q   +  +  I+        L  ++I    +         +W ++   L +L +++  
Sbjct: 356 --QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS---LLSLNMSSNI 410

Query: 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGPLPLWSF 235
           ++DTI      L   +  LD+  N++  SIP  +  +  A   ++++SN  +  +P   F
Sbjct: 411 LTDTIFR---CLPPRIKVLDLHSNKIK-SIPKQV-VKLEALQELNVASNQLKS-VPDGIF 464

Query: 236 ----NVTKLYLRDNSF 247
               ++ K++L  N +
Sbjct: 465 DRLTSLQKIWLHTNPW 480

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (278), Expect = 1e-26
 Identities = 77/395 (19%), Positives = 150/395 (37%), Gaps = 43/395 (10%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
           +  ++L  N +     +S   L++L++L++   +    I  +    L+ L  L L  NQ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 78  NGKFPENFGQLSAVEVLDLSENQ-WEGIITETHFRNLSNLKELALNK---QS-------- 125
                  F  L+ +EVL L++      +++   F+ L++L+ L L     +         
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 126 -----ENISLIFN-ISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
                  + L FN + S  I       +N +         T LR  + +T   +N   + 
Sbjct: 152 NMRRFHVLDLTFNKVKS--ICE--EDLLNFQGKHF-----TLLRLSS-ITLQDMNEYWLG 201

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
                  ++   ++  LD++ N    S+            D  + +    L L +     
Sbjct: 202 WEKCGNPFKN-TSITTLDLSGNGFKESMAKRF-------FDAIAGTKIQSLILSNSYNMG 253

Query: 240 LYLRDNSFSGPIPRDF-GQKIPFLTDLDISFNSLNGSVSKSIC-NLQQLLTLVISNNNLS 297
                 +F  P    F G +   +   D+S + +  ++ KS+  +   L  L ++ N ++
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGEVPPSLKNCS 356
                 +  ++ L  L++S N L   I   +  +L  +  L L  NHI      S     
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371

Query: 357 MMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
            +  L L  NQL  ++P  I + + SL  + L +N
Sbjct: 372 NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 70/393 (17%), Positives = 131/393 (33%), Gaps = 57/393 (14%)

Query: 54  VGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNL 113
           V  +P  +        + LS N +      +F +L  ++ L + +     +I    FR L
Sbjct: 25  VPELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78

Query: 114 SNLKELALNKQSENISLIFNISSHWIPP------FKLTFINIRSCQLGPKF--PTWLRNQ 165
           S+L  L L     N           +          L  + +  C L        + +  
Sbjct: 79  SSLIILKL---DYN-----QFLQ--LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
           T L  LVL +  I    P  F+        LD+ +N++  SI       F          
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTL--- 184

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQ 285
                 L   ++T   + +         +   K   +T LD+S N    S++K   +   
Sbjct: 185 ------LRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 286 LLTL-VISNNNLSGEIPRLWSNI--------------SSLYILDMSNNSLSGEIPESI-G 329
              +  +  +N                          S +   D+S + +   + +S+  
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFS 296

Query: 330 SLLSVRFLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL 388
               +  L L  N I+ ++   +    + +  L+L  N L  +I + + E++  L +L L
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDL 354

Query: 389 RSNYFNGTIPPEL-CKLPALHILDLSHNNLSGI 420
             N+    +  +    LP L  L L  N L  +
Sbjct: 355 SYNHI-RALGDQSFLGLPNLKELALDTNQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 81/461 (17%), Positives = 135/461 (29%), Gaps = 113/461 (24%)

Query: 42  NLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQMNGKFPEN-FGQLSAVEVLDLSEN 99
           ++ Y++L  NS    +   S   L  L+ L +           N F  LS++ +L L  N
Sbjct: 31  HVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 100 QWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFP 159
           Q+   +    F  L+NL+ L L   ++      N+    +                    
Sbjct: 90  QFL-QLETGAFNGLANLEVLTL---TQC-----NLDGAVLSG------------------ 122

Query: 160 TWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATV 219
            + +  T L  LVL +  I    P  F+        LD+ +N++  SI       F    
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKH 181

Query: 220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
                       L   ++T   + +         +   K   +T LD+S N    S++K 
Sbjct: 182 FTL---------LRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKR 231

Query: 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
             +                +I  L  + S        + +             +  F  L
Sbjct: 232 FFDAIAGT-----------KIQSLILSNSYNMGSSFGHTNFK--------DPDNFTFKGL 272

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
             + +               + DL  +++   +   +      L  L L  N  N  I  
Sbjct: 273 EASGVK--------------TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316

Query: 400 E-LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYT 458
                L  L  L+LS N L  I       F                              
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDS---RMFEN---------------------------- 345

Query: 459 TLYLVNL--MDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              L  L  +DLS N++          L +L  L L  N L
Sbjct: 346 ---LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 19  LEKLELGFNQLNGDLPS-SLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQ 76
           L KL L  N L G + S     L  L  L+L +N    ++       L  LKEL L +NQ
Sbjct: 325 LLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQ 382

Query: 77  MNGKFPENFGQLSAVEVLDLSENQW 101
           +       F +L++++ + L  N W
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPW 407

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 2e-26
 Identities = 70/356 (19%), Positives = 137/356 (38%), Gaps = 58/356 (16%)

Query: 42  NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQW 101
             R L+L  N           +   L+EL L+ N ++   P  F  L  +  L L  N+ 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 102 EGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTW 161
           + +I    F  LSNL +L +   SEN               K+  +              
Sbjct: 93  K-LIPLGVFTGLSNLTKLDI---SEN---------------KIVILL----------DYM 123

Query: 162 LRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDL 221
            ++   L +L + +  +       F  L+ +L++L +    L+                +
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLT---------------SI 167

Query: 222 SSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSIC 281
            + +    L      +  L LR  + +  I     +++  L  L+IS      +++ +  
Sbjct: 168 PTEALSH-LH----GLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 282 NLQQLLTLVISNNNLSGEIPR-LWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLIL 339
               L +L I++ NL+  +P     ++  L  L++S N +S  I  S+   LL ++ + L
Sbjct: 222 YGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQL 279

Query: 340 CNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 394
               ++  V P + +  + +  L++  NQL+  +   +  S+ +L  L L SN   
Sbjct: 280 VGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (255), Expect = 2e-23
 Identities = 62/332 (18%), Positives = 130/332 (39%), Gaps = 56/332 (16%)

Query: 91  VEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIR 150
             +LDL +N+ +  + +  F +  +L+EL L   +EN      +S+  + P         
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFASFPHLEELEL---NEN-----IVSA--VEPG-------- 74

Query: 151 SCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNS 210
                        N   L TL L + R+       F  L   L +LD++ N++       
Sbjct: 75  ----------AFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIV------ 117

Query: 211 LGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFN 270
                     L    F+  L     N+  L + DN       R F   +  L  L +   
Sbjct: 118 ---------ILLDYMFQD-LY----NLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKC 162

Query: 271 SLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGS 330
           +L    ++++ +L  L+ L + + N++      +  +  L +L++S+      +  +   
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 331 LLSVRFLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 389
            L++  L + + +++  VP  ++++   +  L+L  N +S  I   +   +  L  ++L 
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLV 280

Query: 390 SNYFNGTIPPE-LCKLPALHILDLSHNNLSGI 420
                  + P     L  L +L++S N L+ +
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTL 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 6e-23
 Identities = 69/326 (21%), Positives = 131/326 (40%), Gaps = 55/326 (16%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
           LE+LEL  N ++   P +   L NLR L L  N     IP  +   L+ L +L +S N++
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI 116

Query: 78  NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH 137
                  F  L  ++ L++ +N    I     F  L++L++L L    +           
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTL---EKC---------- 162

Query: 138 WIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELD 197
                 LT I              L +   L  L L ++ I+      F +L   L  L+
Sbjct: 163 -----NLTSIP----------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLE 206

Query: 198 VAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ 257
           +++     ++                N   G       N+T L +   + +  +P    +
Sbjct: 207 ISHWPYLDTMT--------------PNCLYGL------NLTSLSITHCNLTA-VPYLAVR 245

Query: 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN 317
            + +L  L++S+N ++      +  L +L  + +    L+   P  +  ++ L +L++S 
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 318 NSLSGEIPESI-GSLLSVRFLILCNN 342
           N L+  + ES+  S+ ++  LIL +N
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 6e-21
 Identities = 57/287 (19%), Positives = 105/287 (36%), Gaps = 24/287 (8%)

Query: 218 TVDLSSNSFEG-PLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV 276
            V      F   P  +       L L  N     + +D     P L +L+++ N ++   
Sbjct: 15  AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVE 72

Query: 277 SKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336
             +  NL  L TL + +N L      +++ +S+L  LD+S N +   +      L +++ 
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396
           L + +N +      +    + ++ L L    L+ +IP      +  L +LRLR    N  
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKG----- 451
                 +L  L +L++SH      + P      G+ +             + +       
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLT-----------SLSITHCNLTA 238

Query: 452 -SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                    +YL  L +LS N +S      L  L+ L  + L    L
Sbjct: 239 VPYLAVRHLVYLRFL-NLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 7e-19
 Identities = 71/333 (21%), Positives = 115/333 (34%), Gaps = 57/333 (17%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
           TE   L L   RI     D F      L+EL++  N +S                +   +
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVS---------------AVEPGA 75

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQ 285
           F   L     N+  L LR N     IP      +  LT LDIS N +   +     +L  
Sbjct: 76  FNN-LF----NLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 286 LLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS 345
           L +L + +N+L     R +S ++SL  L +   +L+    E++  L  +  L L + +I+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 346 GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCK-L 404
                S K    +  L++        +         +L+ L +        +P    + L
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLT-AVPYLAVRHL 247

Query: 405 PALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVN 464
             L  L+LS+N +S I          +             LQ +                
Sbjct: 248 VYLRFLNLSYNPISTIEG---SMLHELL-----------RLQEI---------------- 277

Query: 465 LMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              L    L+   P     L +L  LN+S N L
Sbjct: 278 --QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 23/217 (10%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQM 77
           L+ LE+G N L      +   L +L  L L   +   SIP  ++ +L  L  L L    +
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188

Query: 78  NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH 137
           N     +F +L  ++VL++S   +   +T      L NL  L++   +       N+++ 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSI---THC-----NLTA- 238

Query: 138 WIPPF------KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDL 191
            +P         L F+N+    +     + L     L  + L   +++   P  F  L+ 
Sbjct: 239 -VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN- 296

Query: 192 TLDELDVAYNELSGSIPNSLGFRFPA--TVDLSSNSF 226
            L  L+V+ N+L+ ++  S+        T+ L SN  
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 40/215 (18%)

Query: 285 QLLTLVISNNNLSGEIPRLWSNI-SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
           Q   ++         +P     I +   +LD+  N +     +   S   +  L L  N 
Sbjct: 12  QDRAVLCHRKRFV-AVP---EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-C 402
           +S   P +  N   + +L L  N+L   IP  +   + +L+ L +  N     +   +  
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ 125

Query: 403 KLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYL 462
            L  L  L++  N+L  I       FSG+            SL+                
Sbjct: 126 DLYNLKSLEVGDNDLVYISH---RAFSGLN-----------SLEQ--------------- 156

Query: 463 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              + L   NL+      L+ L  L  L L   ++
Sbjct: 157 ---LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (274), Expect = 5e-26
 Identities = 92/417 (22%), Positives = 145/417 (34%), Gaps = 73/417 (17%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIP---------------PSIGN 63
           LE L    N L  +LP     LK+L        +     P               P + N
Sbjct: 93  LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 64  LTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL-- 121
            +FLK + + +N +  K P+    L   E +    NQ E +      +NL  L  +    
Sbjct: 152 SSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLEEL---PELQNLPFLTAIYADN 204

Query: 122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDT 181
           N   +   L  +          L  I   +  L  +    L+N   LTT+  +N  +  T
Sbjct: 205 NSLKKLPDLPLS----------LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-T 251

Query: 182 IPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLY 241
           +PD    L+  L+  D    +L     +         +D+S N F G L     N+  L 
Sbjct: 252 LPDLPPSLE-ALNVRDNYLTDLPELPQSLT------FLDVSENIFSG-LSELPPNLYYLN 303

Query: 242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP 301
              N              P L +L++S N L   +      L+    L+ S N+L+ E+P
Sbjct: 304 ASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVP 353

Query: 302 RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSL 361
            L     +L  L +  N L  E P+   S+  +R     N+H++ EVP   +N      L
Sbjct: 354 EL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR----MNSHLA-EVPELPQNLK---QL 401

Query: 362 DLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418
            +  N L    P        S+  LR+ S                L      H++  
Sbjct: 402 HVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 5e-24
 Identities = 94/429 (21%), Positives = 152/429 (35%), Gaps = 76/429 (17%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
           L +C +     +LEL    L+  LP       +L  L    NS    +P    +L  L  
Sbjct: 65  LRDCLDRQA-HELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSEN 127
              +         +    L   E L +S NQ   +      +N S LK + +  N   + 
Sbjct: 119 DNNNLKA----LSDLPPLL---EYLGVSNNQ---LEKLPELQNSSFLKIIDVDNNSLKKL 168

Query: 128 ISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFW 187
             L  +          L FI   + QL  + P  L+N   LT +  +N  +   +PD   
Sbjct: 169 PDLPPS----------LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPL 215

Query: 188 QLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSF 247
            L+     +    N L   +P      F  T+   +N  +  LP    ++  L +RDN  
Sbjct: 216 SLE----SIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYL 269

Query: 248 SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNI 307
           +  +P         LT LD+S N  +  +S+   NL     L  S+N +   +  L  + 
Sbjct: 270 TD-LPELPQS----LTFLDVSENIFS-GLSELPPNLY---YLNASSNEIR-SLCDLPPS- 318

Query: 308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ 367
             L  L++SNN L  E+P     L     LI   NH++ EVP   +N      L +  N 
Sbjct: 319 --LEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLK---QLHVEYNP 368

Query: 368 LS--------------GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS 413
           L                +  A + E   +L  L + +N      P     +  L    ++
Sbjct: 369 LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMN 424

Query: 414 HNNLSGIIP 422
              +     
Sbjct: 425 SERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (257), Expect = 1e-23
 Identities = 82/426 (19%), Positives = 157/426 (36%), Gaps = 73/426 (17%)

Query: 17  SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNL------------ 64
           + L++     + L  ++P     +K+        + +  + PP  G              
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 65  -TFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITE--THFRNLSNLKELAL 121
                EL L++  ++   PE    L   E L  S N     +TE     ++L +L     
Sbjct: 70  DRQAHELELNNLGLS-SLPELPPHL---ESLVASCNS----LTELPELPQSLKSLLVDNN 121

Query: 122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDT 181
               + +S +         P  L ++ + + QL  K P  L+N + L  + ++N  +   
Sbjct: 122 --NLKALSDL---------PPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLK-K 167

Query: 182 IPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLY 241
           +PD        L+ +    N+L   +P      F   +   +NS +  LP    ++  + 
Sbjct: 168 LPDLPPS----LEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIV 221

Query: 242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP 301
             +N        +    +PFLT +    N L  ++     +L+    L + +N L+ ++P
Sbjct: 222 AGNNILE--ELPELQN-LPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-DLP 273

Query: 302 RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSL 361
            L     SL  LD+S N  S  + E   +L    +L   +N I   +     +   ++ L
Sbjct: 274 EL---PQSLTFLDVSENIFS-GLSELPPNL---YYLNASSNEIR-SLCDLPPS---LEEL 322

Query: 362 DLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGII 421
           ++ +N+L   +PA        L  L    N+    +P        L  L + +N L    
Sbjct: 323 NVSNNKLI-ELPALPP----RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EF 372

Query: 422 PPCVGN 427
           P    +
Sbjct: 373 PDIPES 378

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 81/402 (20%), Positives = 147/402 (36%), Gaps = 67/402 (16%)

Query: 40  LKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN 99
              L+      ++    +P    N+    E Y + ++     P   G+   + V  L + 
Sbjct: 10  NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 100 QWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPP--FKLTFINIRSCQLGPK 157
                             EL LN           +SS  +P     L  +      L  +
Sbjct: 69  ------------LDRQAHELELNNL--------GLSS--LPELPPHLESLVASCNSLT-E 105

Query: 158 FPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA 217
            P   ++   L     N   +SD  P         L+ L V+ N+L   +P      F  
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLE-KLPELQNSSFLK 156

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS 277
            +D+ +NS +  LP    ++  +   +N     +P +    +PFLT +    NSL   + 
Sbjct: 157 IIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLK-KLP 211

Query: 278 KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
               +L+   ++V  NN L  E+P L  N+  L  +   NN L   +P+   SL     L
Sbjct: 212 DLPLSLE---SIVAGNNILE-ELPEL-QNLPFLTTIYADNNLLK-TLPDLPPSL---EAL 262

Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP------------AWIGESMPSLSI 385
            + +N+++ ++P   ++ + +D  +   + LS   P              + +  PSL  
Sbjct: 263 NVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 321

Query: 386 LRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN 427
           L + +N     +P    +   L  L  S N+L+  +P    N
Sbjct: 322 LNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.0 bits (211), Expect = 7e-18
 Identities = 63/355 (17%), Positives = 122/355 (34%), Gaps = 60/355 (16%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           ++ L E  NSS L+ +++  N L   LP       +L ++   +N       P + NL F
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQL--EELPELQNLPF 196

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L  +Y  +N +  K P+    L   E +    N  E +      +NL  L  +  +  + 
Sbjct: 197 LTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILEEL---PELQNLPFLTTIYAD--NN 247

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
            +  + ++      P  L  +N+R   L    P   ++ T L         +S+  P   
Sbjct: 248 LLKTLPDL------PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP--- 297

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS 246
                 L  L+ + NE+               +++S+N     LP     + +L    N 
Sbjct: 298 -----NLYYLNASSNEIRSLCDLPPSLE---ELNVSNNKLIE-LPALPPRLERLIASFNH 348

Query: 247 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLL----------------TLV 290
            +  +P         L  L + +N L         +++ L                  L 
Sbjct: 349 LAE-VPELPQN----LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 291 ISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS 345
           +  N L  E P +     S+  L M++  +      +  +   +   +  ++H  
Sbjct: 403 VETNPLR-EFPDI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (275), Expect = 1e-25
 Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 40/276 (14%)

Query: 143 KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNE 202
            +T + I    L    P        L TL ++  +++ ++P     L L L         
Sbjct: 62  HITTLVIPDNNL-TSLPALPPE---LRTLEVSGNQLT-SLPVLPPGL-LELSIFSNPLTH 115

Query: 203 LSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFL 262
           L  ++P+ L       + +  N     LP+    + +L + DN  +  +P    +    L
Sbjct: 116 LP-ALPSGL-----CKLWIFGNQLTS-LPVLPPGLQELSVSDNQLAS-LPALPSE----L 163

Query: 263 TDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSG 322
             L    N L  S+      LQ    L +S+N L+  +P   +  S LY L   NN L+ 
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLP---TLPSELYKLWAYNNRLT- 214

Query: 323 EIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPS 382
            +P     L   + LI+  N ++  +P        +  L +  N+L+ ++P         
Sbjct: 215 SLPALPSGL---KELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPS----G 262

Query: 383 LSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418
           L  L +  N     +P  L  L +   ++L  N LS
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.1 bits (239), Expect = 3e-21
 Identities = 75/400 (18%), Positives = 122/400 (30%), Gaps = 99/400 (24%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           +  L +  N L   LP+       LR LE+  N    S+P     L  L           
Sbjct: 63  ITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH-- 115

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
              P     L     L +  NQ   +           L+EL                   
Sbjct: 116 --LPALPSGL---CKLWIFGNQLTSLPVL-----PPGLQEL------------------- 146

Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
                    ++   QL    P        L  L   N +++ ++P         L EL V
Sbjct: 147 ---------SVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSG----LQELSV 188

Query: 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQK 258
           + N+L+ S+P                            + KL+  +N  +  +P      
Sbjct: 189 SDNQLA-SLPTLPS-----------------------ELYKLWAYNNRLT-SLPALPSG- 222

Query: 259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNN 318
              L +L +S N L  S+      L+    L++S N L+  +P L    S L  L +  N
Sbjct: 223 ---LKELIVSGNRLT-SLPVLPSELK---ELMVSGNRLT-SLPML---PSGLLSLSVYRN 271

Query: 319 SLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE 378
            L+  +PES+  L S   + L  N +S     +L+    + S       +        G 
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI--IRFDMAGA 325

Query: 379 SMPSLSIL--RLRSNYFNGTIPPELCKLPALHILDLSHNN 416
           S P  +       +++       E       H+     N 
Sbjct: 326 SAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.0 bits (231), Expect = 3e-20
 Identities = 64/311 (20%), Positives = 105/311 (33%), Gaps = 62/311 (19%)

Query: 193 LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIP 252
              L+V  + L+ ++P+ L      T+ +  N+    LP     +  L +  N  +  +P
Sbjct: 42  NAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LP 97

Query: 253 RDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYI 312
                    L +L I  N L   +      L     L I  N L+  +P L      L  
Sbjct: 98  VLPPG----LLELSIFSNPLT-HLPALPSGLC---KLWIFGNQLT-SLPVL---PPGLQE 145

Query: 313 LDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI 372
           L +S+N L+  +P     L     L   NN ++  +P        +  L + DNQL+ ++
Sbjct: 146 LSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SL 196

Query: 373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMK 432
           P         L  L   +N    ++P     L     L +S N L+ + P        + 
Sbjct: 197 PTLPS----ELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLTSL-PVLPSELKELM 247

Query: 433 V------EPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIH 486
           V        P        L                    + +  N L+  +P  L  L  
Sbjct: 248 VSGNRLTSLPMLP---SGLLS------------------LSVYRNQLT-RLPESLIHLSS 285

Query: 487 LGTLNLSRNHL 497
             T+NL  N L
Sbjct: 286 ETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.8 bits (168), Expect = 2e-12
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 60/218 (27%)

Query: 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
            C       L +  + L+  +P      + +  L + +N+L+  +P     L   R L +
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPD--CLPAHITTLVIPDNNLT-SLPALPPEL---RTLEV 88

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
             N ++  +P        +         L              L  L +  N    ++P 
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLT-SLPV 138

Query: 400 ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTT 459
                P L  L +S N L+ + P                                     
Sbjct: 139 LP---PGLQELSVSDNQLASL-PALPSE-------------------------------- 162

Query: 460 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
             L  L    +N L+  +P+  + L  L   ++S N L
Sbjct: 163 --LCKL-WAYNNQLT-SLPMLPSGLQEL---SVSDNQL 193

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 4/115 (3%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           L  L +  NQL   LP SL +L +   + L  N        ++  +T        S  + 
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT---SAPGYSGPII 318

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFN 133
                          L L+   W     E                 ++  SL  +
Sbjct: 319 RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLD 373

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (274), Expect = 1e-25
 Identities = 67/388 (17%), Positives = 136/388 (35%), Gaps = 53/388 (13%)

Query: 13  CTNSSLLEKLELGFNQLNGDLPSSLG-----YLKNLRYLELWHNSFVGSIPPSI-GNLTF 66
           C +S+L          ++              L N + +   +++    +P ++  +   
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           ++ L L+  Q+       F     ++ L +  N     +    F+N+  L  L L     
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL---ER 132

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
           N                L+ +                N  +LTTL ++N  +     D F
Sbjct: 133 N---------------DLSSLPRGI----------FHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS 246
                +L  L ++ N L+  +  SL        ++S N            V +L    NS
Sbjct: 168 QATT-SLQNLQLSSNRLT-HVDLSL-IPSLFHANVSYNLLSTLAIP--IAVEELDASHNS 222

Query: 247 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSN 306
            +  +      +   LT L +  N+L  + +  + N   L+ + +S N L   +   +  
Sbjct: 223 INV-VRGPVNVE---LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 307 ISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 366
           +  L  L +SNN L   +      + +++ L L +NH+   V  +      +++L L  N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 367 QLSGNIPAWIGESMPSLSILRLRSNYFN 394
            +   +      +  +L  L L  N ++
Sbjct: 335 SIV-TLKL---STHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.3 bits (229), Expect = 4e-20
 Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 66/365 (18%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
            I  ++       ++++     +  F      L+  +++    +     +      +   
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN 175
           ++ L L   ++                ++  I+                   +  L +  
Sbjct: 77  VELLNL---NDL---------------QIEEID----------TYAFAYAHTIQKLYMGF 108

Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF 235
             I    P  F  +   L  L +  N+LS                L    F    P    
Sbjct: 109 NAIRYLPPHVFQNVP-LLTVLVLERNDLS---------------SLPRGIFHN-TP---- 147

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
            +T L + +N+    I  D  Q    L +L +S N L       +  +  L    +S N 
Sbjct: 148 KLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNL 203

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           LS  +        ++  LD S+NS++  +       + +  L L +N+++      L N 
Sbjct: 204 LS-TLAIP----IAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNY 253

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
             +  +DL  N+L   I       M  L  L + +N     +      +P L +LDLSHN
Sbjct: 254 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 416 NLSGI 420
           +L  +
Sbjct: 312 HLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 50/291 (17%), Positives = 107/291 (36%), Gaps = 26/291 (8%)

Query: 220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
             + + + G   +   N   +  ++++    +P         +  L+++   +    + +
Sbjct: 36  MQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYA 94

Query: 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLI 338
                 +  L +  N +    P ++ N+  L +L +  N LS  +P  I  +   +  L 
Sbjct: 95  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153

Query: 339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398
           + NN++      + +  + + +L L  N+L+ ++       +PSL    +  N  +    
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLS---- 205

Query: 399 PELCKLPALHILDLSHNNLSGIIPPCVGN-----FSGMKVEPPDSVKYEGSLQVV-LKG- 451
             L    A+  LD SHN+++ +  P              +     +     L  V L   
Sbjct: 206 -TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264

Query: 452 -----SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                  + F     L  L  +S+N L   + +    +  L  L+LS NHL
Sbjct: 265 ELEKIMYHPFVKMQRLERL-YISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.8 bits (181), Expect = 4e-14
 Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 22/242 (9%)

Query: 257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMS 316
           Q      D+ I   + +         L     +   N+ +      L  +   + +L+++
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 317 NNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI 376
           +  +      +     +++ L +  N I    P   +N  ++  L L  N LS ++P  I
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142

Query: 377 GESMPSLSILRLRSNYFNGTIPPE-LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP 435
             + P L+ L + +N     I  +      +L  L LS N L+ +          +    
Sbjct: 143 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLF--- 195

Query: 436 PDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
                        +  +          V  +D S N+++    V     + L  L L  N
Sbjct: 196 ----------HANVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHN 242

Query: 496 HL 497
           +L
Sbjct: 243 NL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           +   +   N   L +++L +N+L   +      ++ L  L + +N  V ++      +  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 302

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
           LK L LS N +      N  Q   +E L L  N     I          LK L L+
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLS 353

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 53/420 (12%), Positives = 117/420 (27%), Gaps = 39/420 (9%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
           LS       +E+L+   N +N  +   +     L  L+L HN+   +    + N   L E
Sbjct: 204 LSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVE 258

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENIS 129
           + LS N++       F ++  +E L +S N+   +    + + +  LK L L   S N  
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDL---SHN-- 311

Query: 130 LIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQL 189
            + ++  +     +L  + +    +     +       L  L L++        +    L
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD---CNSLRAL 365

Query: 190 DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSG 249
              +    V   +    I   L               E   P     +  + L       
Sbjct: 366 FRNVARPAVDDADQHCKIDYQLEHGL--------CCKESDKPYLDRLLQYIALTSVVEKV 417

Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLV----ISNNNLSGEIPRLWS 305
              +        +  +    + +       +   +QL   V         L+ E  +   
Sbjct: 418 QRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQ 477

Query: 306 NISSLYIL---DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM----- 357
            +  L+     ++    L  +        L+  F  L             +         
Sbjct: 478 LLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK 537

Query: 358 -MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416
             + L+  +  L   +     +         L+          +        +    H++
Sbjct: 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 34/219 (15%)

Query: 293 NNNLSGEIPRLWSNISSL----YILDMSNNSLSGEIPESI--GSLLSVRFLILCNNHISG 346
             N+    P      S+L       D+  +  + ++       +L + + +   N+ +  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 347 EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLP 405
                L +   ++ L+L D Q+   I  +      ++  L +  N     +PP     +P
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVP 123

Query: 406 ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVV-LKG------SEYVFYT 458
            L +L L  N+LS +     G F                L  + +         +  F  
Sbjct: 124 LLTVLVLERNDLSSLPR---GIFHNTP-----------KLTTLSMSNNNLERIEDDTFQA 169

Query: 459 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           T  L NL  LSSN L+    V+L+ +  L   N+S N L
Sbjct: 170 TTSLQNL-QLSSNRLTH---VDLSLIPSLFHANVSYNLL 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 3e-23
 Identities = 56/353 (15%), Positives = 110/353 (31%), Gaps = 66/353 (18%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
           +I     N    K   ++ + +             V+ LDLS N    I         + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTK 59

Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN 175
           L+ L L   S N      +                             + + L TL LNN
Sbjct: 60  LELLNL---SSN-----VLYE--TLDL--------------------ESLSTLRTLDLNN 89

Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF 235
             + +        +  +++ L  A N +S                +S +  +        
Sbjct: 90  NYVQE------LLVGPSIETLHAANNNIS---------------RVSCSRGQ-------- 120

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNN 294
               +YL +N  +     D G     +  LD+  N ++  + ++   +   L  L +  N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN 354
            +  ++       + L  LD+S+N L+  +     S   V ++ L NN +   +  +L+ 
Sbjct: 180 FIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPAL 407
              ++  DL  N                +  +  ++         E C +P L
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 51/352 (14%), Positives = 101/352 (28%), Gaps = 65/352 (18%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSS 74
           N +  +  ++  + L   L S      N++ L+L  N         +   T L+ L LSS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNI 134
           N +      +   LS +  LDL+ N     + E       +++ L     + N       
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNY----VQE--LLVGPSIETLHA---ANN------- 109

Query: 135 SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLD 194
                    ++ ++    Q                 + L N +I+             + 
Sbjct: 110 --------NISRVSCSRGQG-------------KKNIYLANNKITMLRDLDEGCR-SRVQ 147

Query: 195 ELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRD 254
            LD+  NE+                 ++              +  L L+ N     +   
Sbjct: 148 YLDLKLNEID---------------TVNFAELAASSD----TLEHLNLQYNFIYD-VKGQ 187

Query: 255 FGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD 314
                  L  LD+S N L   +     +   +  + + NN L   I +      +L   D
Sbjct: 188 VV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 366
           +  N              + R   +    +      + + C++      G  
Sbjct: 244 LRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 57/282 (20%), Positives = 99/282 (35%), Gaps = 52/282 (18%)

Query: 220 DLSSNSFEGPLPLWSF----NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS 275
            ++ +S +            NV +L L  N  S     D       L  L++S N L   
Sbjct: 16  KVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVL--Y 71

Query: 276 VSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVR 335
            +  + +L  L TL ++NN +  E+        S+  L  +NN++S  +  S G     +
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNIS-RVSCSRGQGK--K 123

Query: 336 FLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395
            + L NN I+          S +  LDL  N++     A +  S  +L  L L+ N+   
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 396 TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV 455
            +  ++     L  LDLS N L+  + P   + +               +  +       
Sbjct: 183 DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA--------------GVTWI------- 219

Query: 456 FYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                       L +N L   +   L    +L   +L  N  
Sbjct: 220 -----------SLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 6e-19
 Identities = 49/263 (18%), Positives = 90/263 (34%), Gaps = 48/263 (18%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
                 + D+S          Q    + +LD+S N L+   +  +    +L  L +S+N 
Sbjct: 11  RYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           L  E   L  ++S+L  LD++NN +       +    S+  L   NN+IS       +  
Sbjct: 70  LY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-TIPPELCKLPALHILDLSH 414
               ++ L +N+++  +          +  L L+ N  +             L  L+L +
Sbjct: 122 --KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 415 NNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS 474
           N +  +                                  V +  L     +DLSSN L+
Sbjct: 179 NFIYDV-------------------------------KGQVVFAKL---KTLDLSSNKLA 204

Query: 475 GEMPVELTRLIHLGTLNLSRNHL 497
             M  E      +  ++L  N L
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           ++      +S  LE L L +N +  D+   +     L+ L+L  N     + P   +   
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           +  + L +N++     +       +E  DL  N +        F     ++ +A     +
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359
           I  +  N +   I  ++++SL   +     S  +V+ L L  N +S      L   + ++
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
            L+L  N L         ES+ +L  L L +NY       EL   P++  L  ++NN+S 
Sbjct: 62  LLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
           +         G                                 N+  L++N ++    +
Sbjct: 114 VSC---SRGQG-------------------------------KKNI-YLANNKITMLRDL 138

Query: 480 ELTRLIHLGTLNLSRNHL 497
           +      +  L+L  N +
Sbjct: 139 DEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 39/262 (14%), Positives = 74/262 (28%), Gaps = 40/262 (15%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
           + E      +E L    N ++  +  S    +  + + L +N          G  + ++ 
Sbjct: 92  VQELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 70  LYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENI 128
           L L  N+++   F E       +E L+L  N    I         + LK L L   S N 
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF---IYDVKGQVVFAKLKTLDL---SSN- 201

Query: 129 SLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188
                         KL F+               ++   +T + L N ++   I      
Sbjct: 202 --------------KLAFM-----------GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG--PLPLWSFNVTKLYLRDNS 246
               L+  D+  N            +      ++  + +           V  L      
Sbjct: 236 SQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 247 FSGPIPRDFGQKIPFLTDLDIS 268
               +P  F  ++  L      
Sbjct: 295 CCEDLPAPFADRLIALGHHHHH 316

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 2e-22
 Identities = 82/500 (16%), Positives = 159/500 (31%), Gaps = 89/500 (17%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
            + L L  N ++      + +L  LR L L HN    S+   +      L+ L +S N++
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 78  NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK---QSENISLIFNI 134
                     ++++  LDLS N ++ +     F NL+ L  L L+    +  ++  + ++
Sbjct: 113 -QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 135 SSHWIPPFKLTFINIRSCQLGP-KFPTWLRNQTELTTLVLNNVRISDTIPD--------- 184
               I       +++ S  +   +  +     T +  LV +   +     +         
Sbjct: 170 HLSCI------LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 185 WFWQLDLTLDELDVAYNELSGSIPNS--LGFRFPATVDLSSNSFEGPLPLWSFNVTKLYL 242
               + L  +        LS        L             S +     W   V  L +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 243 RDNSFSGPIPRDFGQ----KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG 298
            + + +  I R+        +  L    +       S         ++   ++S ++   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 299 EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM 358
                  + SS   L+ + N  +  + +   +L  ++ LIL  N +             M
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNM 402

Query: 359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPA-LHILDLSHNNL 417
            SL+  D  L                      N  N       C     + +L+LS N L
Sbjct: 403 SSLETLDVSL----------------------NSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM 477
           +G +  C+          P  VK                         +DL +N +   +
Sbjct: 441 TGSVFRCL----------PPKVKV------------------------LDLHNNRIM-SI 465

Query: 478 PVELTRLIHLGTLNLSRNHL 497
           P ++T L  L  LN++ N L
Sbjct: 466 PKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 48/291 (16%), Positives = 89/291 (30%), Gaps = 56/291 (19%)

Query: 10  LSECTNSSLLEKLELGFNQLNG-----DLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNL 64
           L +      +E L +    +       +   S   LK+L    + +  F+ S        
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 65  TFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQ 124
             +    LS +             S+   L+ ++N      T++ F+  S LK L     
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV----FTDSVFQGCSTLKRLQTLIL 384

Query: 125 SENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPD 184
             N                L            K     +N + L TL ++   ++    D
Sbjct: 385 QRN---------------GLKNF--------FKVALMTKNMSSLETLDVSLNSLNSHAYD 421

Query: 185 WFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD 244
                  ++  L+++ N L+GS+   L                         V  L L +
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCL----------------------PPKVKVLDLHN 459

Query: 245 NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
           N     IP+D    +  L +L+++ N L          L  L  + + +N 
Sbjct: 460 NRIMS-IPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 65/449 (14%), Positives = 130/449 (28%), Gaps = 111/449 (24%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
            +P  +      K L LS N ++     +   LS + VL LS N+   +     F    +
Sbjct: 45  HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQD 101

Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQL-----GPKFPTWLRNQTELTT 170
           L+ L +   S N   + NIS   +    L  +++            +F     N T+LT 
Sbjct: 102 LEYLDV---SHN--RLQNISCCPMA--SLRHLDLSFNDFDVLPVCKEF----GNLTKLTF 150

Query: 171 LVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPL 230
           L L+  +           L L+   LD+    + G    SL                   
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP---------------- 194

Query: 231 PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFL--TDLDISFNSLNGSVSKSICNLQQLLT 288
              +  V  L    NS            +  L  +++ ++  +    ++      +    
Sbjct: 195 ---NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 289 LVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV 348
           L ++  ++              +   +   ++                            
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY--------------------------- 284

Query: 349 PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALH 408
                N ++ + +D  +   S         ++ SL I  +++  F  +          ++
Sbjct: 285 -----NLTITERIDREEFTYSET-------ALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 409 ILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDL 468
           I  LS ++   I   C  + S                            +  +L    + 
Sbjct: 333 IKMLSISDTPFIHMVCPPSPS----------------------------SFTFL----NF 360

Query: 469 SSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           + N  +  +    + L  L TL L RN L
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.2 bits (239), Expect = 3e-21
 Identities = 53/269 (19%), Positives = 95/269 (35%), Gaps = 52/269 (19%)

Query: 153 QLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG 212
                + +      +      N       + +          EL +    LS S+P++L 
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLNLS-SLPDNLP 79

Query: 213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSL 272
                                   +T L +  N+    +P         L  LD   N L
Sbjct: 80  P----------------------QITVLEITQNALI-SLPELPAS----LEYLDACDNRL 112

Query: 273 NGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLL 332
           + ++ +   +L+ L    + NN L+  +P L    + L  ++  NN L+  +PE   SL 
Sbjct: 113 S-TLPELPASLKHLD---VDNNQLT-MLPEL---PALLEYINADNNQLT-MLPELPTSL- 162

Query: 333 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE---SMPSLSILRLR 389
               L + NN ++  +P   ++   +++LD+  N L  ++PA       S  +    R R
Sbjct: 163 --EVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 390 SNYFNGTIPPELCKLPALHILDLSHNNLS 418
            N     IP  +  L     + L  N LS
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 7e-18
 Identities = 50/264 (18%), Positives = 90/264 (34%), Gaps = 63/264 (23%)

Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSK-SICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
              D+           +   + N +VS    C + Q   L ++  NLS  +P   +    
Sbjct: 25  TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPD--NLPPQ 81

Query: 310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS 369
           + +L+++ N+L   +PE   SL    +L  C+N +S  +P    +      LD+ +NQL+
Sbjct: 82  ITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPELPASLK---HLDVDNNQLT 133

Query: 370 GNIPAWIG----------------ESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS 413
             +P                    E   SL +L +R+N     +P       +L  LD+S
Sbjct: 134 -MLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-FLPELP---ESLEALDVS 188

Query: 414 HNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNL 473
            N L   +P         +             ++                       N +
Sbjct: 189 TNLLES-LPAVPVRNHHSE-----------ETEIFF-----------------RCRENRI 219

Query: 474 SGEMPVELTRLIHLGTLNLSRNHL 497
           +  +P  +  L    T+ L  N L
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 60/326 (18%), Positives = 105/326 (32%), Gaps = 60/326 (18%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
           SI   I N   L +     N ++G + + F      E   L        ++      ++ 
Sbjct: 2   SIMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 116 LKELALNKQSENISLIFNISSHWIPPF---KLTFINIRSCQLGPKFPTWLRNQTELTTLV 172
             EL L   +       N+SS  +P     ++T + I    L    P    +   L  L 
Sbjct: 61  FSELQL---NRL-----NLSS--LPDNLPPQITVLEITQNALI-SLPELPAS---LEYLD 106

Query: 173 LNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPL 232
             + R+S T+P+    L      LDV  N+L+  +P                        
Sbjct: 107 ACDNRLS-TLPELPASLK----HLDVDNNQLT-MLPELPA-------------------- 140

Query: 233 WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
               +  +   +N  +  +P         L  L +  N L   + +   +L+    L +S
Sbjct: 141 ---LLEYINADNNQLTM-LPELPTS----LEVLSVRNNQLT-FLPELPESLE---ALDVS 188

Query: 293 NNNLSG---EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP 349
            N L        R   +  +        N ++  IPE+I SL     +IL +N +S  + 
Sbjct: 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 350 PSLKNCSMMDSLDLGDNQLSGNIPAW 375
            SL   +            S +    
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 47/316 (14%), Positives = 94/316 (29%), Gaps = 81/316 (25%)

Query: 17  SLLEKLELGFNQLNGDLPSSL--GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSS 74
              EK  L     N +  S L    +     L+L   +   S+P ++     +  L ++ 
Sbjct: 34  DKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQ 89

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNI 134
           N +    PE    L   E LD  +N+   +         ++LK L               
Sbjct: 90  NAL-ISLPELPASL---EYLDACDNRLSTLPEL-----PASLKHL--------------- 125

Query: 135 SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLD 194
                        ++ + QL    P        L  +  +N +++  +P+    L+    
Sbjct: 126 -------------DVDNNQL-TMLPELPAL---LEYINADNNQLT-MLPELPTSLE---- 163

Query: 195 ELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRD 254
            L V  N+L+  +P                           ++  L +  N     +P  
Sbjct: 164 VLSVRNNQLT-FLPELPE-----------------------SLEALDVSTNLLES-LPAV 198

Query: 255 FGQKI---PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLY 311
             +               N +   + ++I +L    T+++ +N LS  I    S  ++  
Sbjct: 199 PVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

Query: 312 ILDMSNNSLSGEIPES 327
                    S    + 
Sbjct: 258 DYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE----LYLSS 74
           LE L +  NQL   LP       +L  L++  N    S+P         +E         
Sbjct: 162 LEVLSVRNNQLT-FLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRE 216

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNI 134
           N++    PEN   L     + L +N              +   +    +   ++S     
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLSS-RIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 135 SSHWIPPFKLT 145
           + H      +T
Sbjct: 275 TLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLR----YLELWHNSFVGSIPPSIGNLTFLKELYLSS 74
           LE L++  N L   LP+      +      +     N     IP +I +L     + L  
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQ--WEGIITETHFRNLSNLKELALNKQSEN 127
           N ++ +  E+  Q +A                   T  R L++       +  ++
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 8e-19
 Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 24/281 (8%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
           ++ L+L  N++     S L    NL+ L L  N  + +I      +L  L+ L LS N +
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 78  NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH 137
           +      F  LS++  L+L  N ++ +   + F +L+ L+ L +     N+     I   
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG----NMDTFTKIQRK 168

Query: 138 WIPPF-KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDEL 196
                  L  + I +  L    P  L++   ++ L+L+  +    + + F  +  +++ L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 197 DVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG 256
           ++   +L     +           LS+      +  ++F    + + D S    + +   
Sbjct: 228 ELRDTDLDTFHFSE----------LSTGETNSLIKKFTF--RNVKITDESLF-QVMKLL- 273

Query: 257 QKIPFLTDLDISFNSLNGSVSKSIC-NLQQLLTLVISNNNL 296
            +I  L +L+ S N L  SV   I   L  L  + +  N  
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 52/272 (19%), Positives = 97/272 (35%), Gaps = 21/272 (7%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
            V  L L +N  +     D  Q+   L  L ++ N +N     S  +L  L  L +S N 
Sbjct: 53  AVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 296 LSGEIPRLW-SNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGEVPP-SL 352
           LS  +   W   +SSL  L++  N        S+   L  ++ L + N     ++     
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 353 KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLPALHILD 411
              + ++ L++  + L  +      +S+ ++S L L        +         ++  L+
Sbjct: 171 AGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 412 LSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVV------LKGSEYVFYTTLYLVNL 465
           L   +L         +FS +     +S+  + + + V      L     +      L+ L
Sbjct: 229 LRDTDLDTF------HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282

Query: 466 MDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
            + S N L         RL  L  + L  N  
Sbjct: 283 -EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 34/269 (12%)

Query: 159 PTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPAT 218
            + L+    L  LVL +  I+    D F  L  +L+ LD++YN LS              
Sbjct: 69  NSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLS-------------- 113

Query: 219 VDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK 278
            +LSS+ F+  L     ++T L L  N +           +  L  L +        + +
Sbjct: 114 -NLSSSWFKP-LS----SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 279 SI-CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
                L  L  L I  ++L    P+   +I ++  L +        +   +    SV  L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 338 ILCNNHISGE--------VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 389
            L +  +              SL       ++ + D  L   +       +  L  L   
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFS 285

Query: 390 SNYFNGTIPPELCK-LPALHILDLSHNNL 417
            N    ++P  +   L +L  + L  N  
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 9e-13
 Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 32/264 (12%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
             + +L L+N RI+        +    L  L +  N ++                +  +S
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGIN---------------TIEEDS 95

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSIC--NL 283
           F   L     ++  L L  N  S  +   + + +  LT L++  N    ++ ++    +L
Sbjct: 96  FSS-LG----SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148

Query: 284 QQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN 342
            +L  L + N +   +I  + ++ ++ L  L++  + L    P+S+ S+ +V  LIL   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 343 HISGEVPPSLKNCSMMDSLDLGDNQLSGN----IPAWIGESMPSLSILRLRSNYFNG--T 396
                +   +   S ++ L+L D  L       +      S+      R           
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 397 IPPELCKLPALHILDLSHNNLSGI 420
           +   L ++  L  L+ S N L  +
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%)

Query: 308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ 367
               I   S+ SL+  IP  +    +V+ L L NN I+      L+ C  + +L L  N 
Sbjct: 31  DRNGICKGSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 368 LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLPALHILDLSHNNLSGIIPPCVG 426
           ++  I      S+ SL  L L  NY    +       L +L  L+L  N    +      
Sbjct: 88  IN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGET--S 143

Query: 427 NFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIH 486
            FS +       V    +   + +     F    +L  L ++ +++L    P  L  + +
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEEL-EIDASDLQSYEPKSLKSIQN 199

Query: 487 LGTLNLSRNHL 497
           +  L L     
Sbjct: 200 VSHLILHMKQH 210

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 55/266 (20%), Positives = 93/266 (34%), Gaps = 42/266 (15%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
           + T++       +  +P          T L++  N L          L QL  L +S+N 
Sbjct: 8   SGTEIRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 296 LS--GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL- 352
           LS  G   +     +SL  LD+S N +   +  +   L  +  L   ++++      S+ 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 353 KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLPALHILD 411
            +   +  LD+            I   + SL +L++  N F     P+   +L  L  LD
Sbjct: 123 LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 412 LSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSN 471
           LS   L  + P     F+ +            SLQV+                  ++S N
Sbjct: 182 LSQCQLEQLSP---TAFNSLS-----------SLQVL------------------NMSHN 209

Query: 472 NLSGEMPVELTRLIHLGTLNLSRNHL 497
           N           L  L  L+ S NH+
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 16/206 (7%)

Query: 221 LSSNSFEGPLPLWSFNVTKLYLRDNSFS-GPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
           L    F+  L      +TKL L  N  S              L  LD+SFN +  ++S +
Sbjct: 43  LPHGVFDK-LT----QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96

Query: 280 ICNLQQLLTLVISNNNLSGEIPR--LWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRF 336
              L+QL  L   ++NL  ++    ++ ++ +L  LD+S+          I   L S+  
Sbjct: 97  FLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEV 154

Query: 337 LILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395
           L +  N       P        +  LDL   QL   +      S+ SL +L +  N F  
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF- 212

Query: 396 TIPPE-LCKLPALHILDLSHNNLSGI 420
           ++       L +L +LD S N++   
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 55/282 (19%), Positives = 88/282 (31%), Gaps = 53/282 (18%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHN--SFVGSIPPSIGNLTFLKELYLSSNQ 76
             +LEL  N+L          L  L  L L  N  SF G    S    T LK L LS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
           +      NF  L  +E LD   +  + +   + F +L NL  L +   S           
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHT--------- 136

Query: 137 HWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDEL 196
                                        + L  L +      +      +     L  L
Sbjct: 137 ------HTRVAF----------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 197 DVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG 256
           D++  +L                 LS  +F   L     ++  L +  N+F   +     
Sbjct: 181 DLSQCQLE---------------QLSPTAFNS-LS----SLQVLNMSHNNFFS-LDTFPY 219

Query: 257 QKIPFLTDLDISFNSLNGSVSKSICNLQ-QLLTLVISNNNLS 297
           + +  L  LD S N +  S  + + +    L  L ++ N+ +
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 29/258 (11%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
           +  T L L + ++       F +L   L +L ++ N LS                  S S
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLS-------------FKGCCSQS 73

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI-CNLQ 284
             G       ++  L L  N     +  +F   +  L  LD   ++L      S+  +L+
Sbjct: 74  DFG-TT----SLKYLDLSFNGVIT-MSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 285 QLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNH 343
            L+ L IS+ +       +++ +SSL +L M+ NS        I   L ++ FL L    
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 344 ISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-L 401
           +  ++ P +  + S +  L++  N    ++  +  + + SL +L    N+   T   + L
Sbjct: 187 LE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

Query: 402 CKLP-ALHILDLSHNNLS 418
              P +L  L+L+ N+ +
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 57/294 (19%), Positives = 97/294 (32%), Gaps = 57/294 (19%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGI-ITETHFRNLS 114
           S+P  I   +    L L SN++       F +L+ +  L LS N               +
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 115 NLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLN 174
           +LK L L   S N                +  +            +      +L  L   
Sbjct: 79  SLKYLDL---SFN---------------GVITM-----------SSNFLGLEQLEHLDFQ 109

Query: 175 NVRISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW 233
           +  +   + ++   L L  L  LD+++                      +  F G L   
Sbjct: 110 HSNLK-QMSEFSVFLSLRNLIYLDISHTHTR---------------VAFNGIFNG-LS-- 150

Query: 234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN 293
             ++  L +  NSF      D   ++  LT LD+S   L      +  +L  L  L +S+
Sbjct: 151 --SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI--GSLLSVRFLILCNNHIS 345
           NN        +  ++SL +LD S N +     +        S+ FL L  N  +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 8e-18
 Identities = 44/215 (20%), Positives = 68/215 (31%), Gaps = 16/215 (7%)

Query: 219 VDLSSNSFEGPLPLWSF-NVTKLYLRDNSFSGPIPRDFGQKI-PFLTDLDISFNSLNGSV 276
             + S    G L +     + +L L +   +G  P    +   P L  L++   S     
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 277 SK----SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI---- 328
           +            L  L I+  +             +L  LD+S+N   GE         
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 329 GSLLSVRFLILCNNH---ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI 385
               +++ L L N      SG           +  LDL  N L     A   +    L+ 
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 386 LRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
           L L        +P  L     L +LDLS+N L   
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 6e-15
 Identities = 54/288 (18%), Positives = 96/288 (33%), Gaps = 37/288 (12%)

Query: 145 TFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLD--LTLDELDVAYNE 202
             +     +      T +     L  L +   RI   I     ++     L EL +   E
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 203 LSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP---IPRDFGQKI 259
           ++G+ P  L                  L     ++  L LR+ S++     +        
Sbjct: 107 VTGTAPPPL------------------LEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS----NISSLYILDM 315
           P L  L I+         + +     L TL +S+N   GE   + +       +L +L +
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 316 SNN---SLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL-KNCSMMDSLDLGDNQLSGN 371
            N    + SG       + + ++ L L +N +            S ++SL+L    L   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ- 267

Query: 372 IPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419
           +P  +      LS+L L  N  +    P   +LP +  L L  N    
Sbjct: 268 VPKGLP---AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 9e-15
 Identities = 59/334 (17%), Positives = 98/334 (29%), Gaps = 58/334 (17%)

Query: 179 SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVT 238
           SD  PDW        + L  A  EL G             VD  ++  +    + S ++ 
Sbjct: 18  SDPKPDWS----SAFNCLGAADVELYGG--GRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 239 KLYLRDNSFSGPIPRDFGQ--KIPFLTDLDISFNSLNGSVSKSICNLQ--QLLTLVISNN 294
           +L +R       I     +   I  L +L +    + G+    +       L  L + N 
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 295 NLSGEIPRLWSNIS----SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP 350
           + +     L          L +L ++         E +    ++  L L +N   GE   
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 351 SLKNC----SMMDSLDLGDNQLS--GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKL 404
               C      +  L L +  +     + + +  +   L  L L  N          C  
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 405 P-ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLV 463
           P  L+ L+LS   L  + P  +                   L V+               
Sbjct: 252 PSQLNSLNLSFTGLKQV-PKGLPA----------------KLSVL--------------- 279

Query: 464 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              DLS N L          L  +G L+L  N  
Sbjct: 280 ---DLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 8e-11
 Identities = 46/251 (18%), Positives = 75/251 (29%), Gaps = 31/251 (12%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLG--YLKNLRYLELWHNSFVG--SIPPSIG 62
           + G       S L++L L   ++ G  P  L      +L  L L + S+    +    + 
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 63  NL--TFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
                 LK L ++         E      A+  LDLS+N   G               L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD 180
                                  L   N                + +L  L L++  + D
Sbjct: 205 ----------------------VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 181 TIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG-PLPLWSFNVTK 239
                       L+ L++++  L   +P  L     + +DLS N  +  P P     V  
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-PAKLSVLDLSYNRLDRNPSPDELPQVGN 300

Query: 240 LYLRDNSFSGP 250
           L L+ N F   
Sbjct: 301 LSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 40/271 (14%), Positives = 86/271 (31%), Gaps = 17/271 (6%)

Query: 15  NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS---IGNLTFLKELY 71
             SL   L+    + +    + +    +L+ L +        I      +  ++ L+EL 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 72  LSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLI 131
           L + ++ G  P    + +  ++  L+         +     L    +  L   S   +  
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 132 FNISSHWIPPFK-LTFINIRSCQL----GPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
            N S   +  F  L+ +++         G            L  L L N  +        
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 187 WQLDLT--LDELDVAYNELSGSIPNSLGFRFPA---TVDLSSNSFEGPLPLWSFNVTKLY 241
                   L  LD+++N L      +    +P+   +++LS    +         ++ L 
Sbjct: 222 ALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD 280

Query: 242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSL 272
           L  N      P     ++P + +L +  N  
Sbjct: 281 LSYNRLDR-NP--SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 22/124 (17%), Positives = 34/124 (27%), Gaps = 8/124 (6%)

Query: 5   DFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI--- 61
            ++  L +     L + L +            +     L  L+L  N  +G         
Sbjct: 138 AWLAELQQWLKPGL-KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 62  -GNLTFLKELYLSSNQMN---GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLK 117
                 L+ L L +  M    G           ++ LDLS N              S L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 118 ELAL 121
            L L
Sbjct: 257 SLNL 260

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.1 bits (206), Expect = 9e-18
 Identities = 68/380 (17%), Positives = 121/380 (31%), Gaps = 107/380 (28%)

Query: 41  KNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN 99
            +   L+L +N     I      NL  L  L L +N+++   P  F  L  +E L LS+N
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 100 QWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFP 159
           Q    + E   +    L+EL +    EN      I+   +                    
Sbjct: 111 Q----LKELPEKMPKTLQELRV---HEN-----EITK--VR------------------K 138

Query: 160 TWLRNQTELTTLVLNNVRISDTI--PDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA 217
           +      ++  + L    +  +      F  +   L  + +A   ++ +IP  L    P 
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNIT-TIPQGL---PP- 192

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS 277
                             ++T+L+L  N  +                  +   SL G   
Sbjct: 193 ------------------SLTELHLDGNKIT-----------------KVDAASLKG--- 214

Query: 278 KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
                L  L  L +S N++S       +N   L  L ++NN L  ++P  +     ++ +
Sbjct: 215 -----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT- 396
            L NN+IS  +  +                     P        S S + L SN      
Sbjct: 269 YLHNNNIS-AIGSNDF------------------CPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 397 IPPELCK-LPALHILDLSHN 415
           I P   + +     + L + 
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 57/289 (19%), Positives = 105/289 (36%), Gaps = 51/289 (17%)

Query: 215 FPATVDLSSNSFEG-PLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN 273
               V  S    E  P  L   +   L L++N  +     DF + +  L  L +  N ++
Sbjct: 32  HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKIS 89

Query: 274 GSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNI-SSLYILDMSNNSLSGEIPESI-GSL 331
                +   L +L  L +S N L  E+P     +  +L  L +  N ++ ++ +S+   L
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELP---EKMPKTLQELRVHENEIT-KVRKSVFNGL 144

Query: 332 LSVRFLILCNNHI-SGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 389
             +  + L  N + S  +   + +    +  + + D  ++  IP       PSL+ L L 
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ---GLPPSLTELHLD 200

Query: 390 SNYFNGTIPPE-LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVV 448
            N     +    L  L  L  L LS N++S +                 S          
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSISAV--------------DNGS---------- 235

Query: 449 LKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                     T +L  L  L++N L  ++P  L    ++  + L  N++
Sbjct: 236 -------LANTPHLREL-HLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 34/258 (13%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
            +   L L N +I++     F  L   L  L +  N++S                +S  +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKIS---------------KISPGA 95

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQ 285
           F   L      + +LYL  N     +P    +    L +L +  N +          L Q
Sbjct: 96  FAP-LV----KLERLYLSKNQLKE-LPEKMPKT---LQELRVHENEITKVRKSVFNGLNQ 146

Query: 286 LLTLVISNNNLSGEI--PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
           ++ + +  N L         +  +  L  + +++ +++  IP+  G   S+  L L  N 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNK 203

Query: 344 ISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELC 402
           I+ +V   SLK  + +  L L  N +S  +      + P L  L L +N     +P  L 
Sbjct: 204 IT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 403 KLPALHILDLSHNNLSGI 420
               + ++ L +NN+S I
Sbjct: 261 DHKYIQVVYLHNNNISAI 278

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 67/405 (16%), Positives = 131/405 (32%), Gaps = 47/405 (11%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
                    ++      S   L  L  L+  ++S   +    I  LT L +L  +SN + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT 77

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
                +  Q + +  L    N+    +T      L+ L  L  +      + +  +    
Sbjct: 78  TL---DLSQNTNLTYLACDSNK----LTNLDVTPLTKLTYLNCDT-----NKLTKLDVSQ 125

Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
            P   LT++N     L  +    + + T+LT L  +  +    +          L  LD 
Sbjct: 126 NP--LLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKLD--VTPQ-TQLTTLDC 177

Query: 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDNSFSGPIPRDFGQ 257
           ++N+++  +  S   +    ++  +N+    L L     +T L    N  +     D   
Sbjct: 178 SFNKIT-ELDVS-QNKLLNRLNCDTNNITK-LDLNQNIQLTFLDCSSNKLTEI---DVTP 231

Query: 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN 317
            +  LT  D S N L       +  L +L TL     +L  EI    ++ + L       
Sbjct: 232 -LTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEG 284

Query: 318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG 377
                E+   +     +  L      I+      L     +  L L + +L+  +     
Sbjct: 285 CRKIKELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELDV--- 335

Query: 378 ESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
                L  L   + +        + K+PAL+    +      +  
Sbjct: 336 SHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPK 378

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 71/422 (16%), Positives = 142/422 (33%), Gaps = 85/422 (20%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           + G+ + T    L KL    N +   L   L    NL YL    N    ++   +  LT 
Sbjct: 57  MTGIEKLTG---LTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTK 107

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L  L   +N++      +  Q   +  L+ + N     +TE    + + L EL  +   +
Sbjct: 108 LTYLNCDTNKLT---KLDVSQNPLLTYLNCARNT----LTEIDVSHNTQLTELDCHLNKK 160

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
              L     +      +LT ++    ++  +    +     L  L  +   I+       
Sbjct: 161 ITKLDVTPQT------QLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITK------ 205

Query: 187 WQLDLT----LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYL 242
             LDL     L  LD + N+L+              +D++  +           +T    
Sbjct: 206 --LDLNQNIQLTFLDCSSNKLT-------------EIDVTPLT----------QLTYFDC 240

Query: 243 RDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR 302
             N  +        +    LT L      L       + +  QL+           E+  
Sbjct: 241 SVNPLTELDVSTLSK----LTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELD- 292

Query: 303 LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD 362
             ++ + LY+LD     ++ E+   +     + +L L N  ++ E+   + + + + SL 
Sbjct: 293 -VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLS 345

Query: 363 LGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHI------LDLSHNN 416
             +  +  +  +     +P+L+           T+P E     +L I      LD   N 
Sbjct: 346 CVNAHIQ-DFSSV--GKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNP 401

Query: 417 LS 418
           ++
Sbjct: 402 MN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 63/380 (16%), Positives = 118/380 (31%), Gaps = 85/380 (22%)

Query: 41  KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQ 100
            N             +   S   L  L  L   ++ +         +L+ +  L  + N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 101 WEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPT 160
               IT       +NL  LA      N               KLT +++           
Sbjct: 76  ----ITTLDLSQNTNLTYLAC---DSN---------------KLTNLDVTPL-------- 105

Query: 161 WLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVD 220
                T+LT L  +  +++             L  L+ A N L+              +D
Sbjct: 106 -----TKLTYLNCDTNKLTKLDVSQN----PLLTYLNCARNTLT-------------EID 143

Query: 221 LSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI 280
           +S N+           +T+L    N     +          LT LD SFN +       +
Sbjct: 144 VSHNT----------QLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT---ELDV 187

Query: 281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC 340
              + L  L    NN++ ++    +    L  LD S+N L+ EI   +  L  + +    
Sbjct: 188 SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCS 241

Query: 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 400
            N ++ E+  S    S + +L      L   I         +  ++  ++         +
Sbjct: 242 VNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDLT-----HNTQLIYFQAEGCRKIKELD 292

Query: 401 LCKLPALHILDLSHNNLSGI 420
           +     L++LD     ++ +
Sbjct: 293 VTHNTQLYLLDCQAAGITEL 312

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 55/317 (17%), Positives = 100/317 (31%), Gaps = 64/317 (20%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
             + T  + L  L+  FN++       +   K L  L    N+    +   +     L  
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL-NKQSENI 128
           L  SSN++      +   L+ +   D S N     +TE     LS L  L         I
Sbjct: 217 LDCSSNKLTE---IDVTPLTQLTYFDCSVNP----LTELDVSTLSKLTTLHCIQTDLLEI 269

Query: 129 SLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188
            L  N         +L +     C+   +    + + T+L  L      I++        
Sbjct: 270 DLTHNT--------QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITE-------- 311

Query: 189 LDLT----LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD 244
           LDL+    L  L +   EL+              +D+S N+           +  L   +
Sbjct: 312 LDLSQNPKLVYLYLNNTELT-------------ELDVSHNT----------KLKSLSCVN 348

Query: 245 NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLW 304
                        KIP L +   +      ++ K        LT+ +S + L      + 
Sbjct: 349 AHIQDF---SSVGKIPALNNNFEAEGQTI-TMPKETLTN-NSLTIAVSPDLLDQFGNPMN 403

Query: 305 SNISSLYILDMSNNSLS 321
                  + D + N+++
Sbjct: 404 IEPGDGGVYDQATNTIT 420

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 6e-17
 Identities = 57/267 (21%), Positives = 99/267 (37%), Gaps = 44/267 (16%)

Query: 234 SFNVTKLYLRDNSFSGPIPRDFGQKIP-FLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
           S   +K+       S  +P+     IP     L++  N++    + +  +L  L  L + 
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQG----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP-S 351
            N++       ++ ++SL  L++ +N L+     +   L  +R L L NN I   +P  +
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 352 LKNCSMMDSLDLGD-NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL 410
                 +  LDLG+  +L   I     E + +L  L L          P L  L  L  L
Sbjct: 167 FNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEEL 223

Query: 411 DLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSS 470
           ++S N+   I P   G+F G+                              L  L  + +
Sbjct: 224 EMSGNHFPEIRP---GSFHGLS----------------------------SLKKL-WVMN 251

Query: 471 NNLSGEMPVELTRLIHLGTLNLSRNHL 497
           + +S         L  L  LNL+ N+L
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 28/254 (11%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
           +    L L    I     D F  L   L+ L +  N +                 +   +
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIR---------------QIEVGA 118

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQ 285
           F G L     ++  L L DN  +  IP    + +  L +L +  N +    S +   +  
Sbjct: 119 FNG-LA----SLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 286 LLTLVISNNNLSGEIPR-LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI 344
           L+ L +        I    +  + +L  L++   ++  ++P ++  L+ +  L +  NH 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230

Query: 345 SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCK- 403
               P S    S +  L + ++Q+S  I     + + SL  L L  N  + ++P +L   
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTP 288

Query: 404 LPALHILDLSHNNL 417
           L  L  L L HN  
Sbjct: 289 LRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 60/312 (19%), Positives = 105/312 (33%), Gaps = 59/312 (18%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKE 69
           S C+ S+   K+      L+ ++P  +    N RYL L  N+    I      +L  L+ 
Sbjct: 48  SVCSCSNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEV 103

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENIS 129
           L L  N +       F  L+++  L+L +N    I +   F  LS L+EL L     N  
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA-FEYLSKLRELWL---RNN-- 157

Query: 130 LIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV-RISDTIPDWFWQ 188
                         +  I                    L  L L  + ++       F  
Sbjct: 158 -------------PIESIP----------SYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFS 248
           L   L  L++    +   +P                +    L      + +L +  N F 
Sbjct: 195 LF-NLKYLNLGMCNIK-DMP----------------NLTP-LV----GLEELEMSGNHFP 231

Query: 249 GPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS 308
              P  F   +  L  L +  + ++     +   L  L+ L +++NNLS     L++ + 
Sbjct: 232 EIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 309 SLYILDMSNNSL 320
            L  L + +N  
Sbjct: 291 YLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 66/351 (18%), Positives = 104/351 (29%), Gaps = 106/351 (30%)

Query: 42  NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQW 101
               +          +P  I   +  + L L  N +     + F  L  +EVL L  N  
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 102 EGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTW 161
              I    F  L++L  L L    +N                LT I              
Sbjct: 112 R-QIEVGAFNGLASLNTLEL---FDN---------------WLTVIP----------SGA 142

Query: 162 LRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVA-YNELSGSIPNSLGFRFPATVD 220
               ++L  L L N  I       F ++  +L  LD+    +L                 
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLE---------------Y 186

Query: 221 LSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI 280
           +S  +FEG L     N+  L L   +            +P LT                 
Sbjct: 187 ISEGAFEG-LF----NLKYLNLGMCNIK---------DMPNLT----------------- 215

Query: 281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC 340
             L  L  L +S N+     P  +  +SSL  L + N+ +S  I  +             
Sbjct: 216 -PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERN------------- 260

Query: 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
                     +    + +  L+L  N LS ++P  +   +  L  L L  N
Sbjct: 261 ----------AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 53/362 (14%), Positives = 111/362 (30%), Gaps = 96/362 (26%)

Query: 41  KNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN 99
            +   L+L +N     +       L  L  L L +N+++    + F  L  ++ L +S+N
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 100 QWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFP 159
                + E      S+L EL +    +N      I    +P                   
Sbjct: 113 H----LVEIPPNLPSSLVELRI---HDN-----RIRK--VP------------------K 140

Query: 160 TWLRNQTELTTLVLNNVRISDTI--PDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA 217
                   +  + +    + ++   P  F    L L+ L ++  +L+  IP  L      
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFD--GLKLNYLRISEAKLT-GIPKDL-PE--- 193

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS 277
                              + +L+L  N                     I    L     
Sbjct: 194 ------------------TLNELHLDHNKIQ-----------------AIELEDLLR--- 215

Query: 278 KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
                  +L  L + +N +        S + +L  L + NN LS  +P  +  L  ++ +
Sbjct: 216 -----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 338 ILCNNHISGEVPPS-------LKNCSMMDSLDLGDNQLS-GNIPAWIGESMPSLSILRLR 389
            L  N+I+ +V  +           +  + + L +N +    +       +     ++  
Sbjct: 270 YLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 390 SN 391
           + 
Sbjct: 329 NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 63/287 (21%), Positives = 112/287 (39%), Gaps = 48/287 (16%)

Query: 215 FPATVDLSSNSFEG-PLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN 273
               V  S    +  P  + S + T L L++N  S  + +D  + +  L  L +  N ++
Sbjct: 34  HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKIS 91

Query: 274 GSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNI-SSLYILDMSNNSLSGEIPESIGSLL 332
               K+   L++L  L IS N+L  EIP    N+ SSL  L + +N +          L 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 333 SVRFLILCNNHI-SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
           ++  + +  N + +    P   +   ++ L + + +L+  IP    +   +L+ L L  N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK---DLPETLNELHLDHN 203

Query: 392 YFNGTIPPE-LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLK 450
                I  E L +   L+ L L HN +  I     G+ S +            +L+    
Sbjct: 204 KIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN---GSLSFLP-----------TLRE--- 245

Query: 451 GSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                          + L +N LS  +P  L  L  L  + L  N++
Sbjct: 246 ---------------LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 57/260 (21%), Positives = 94/260 (36%), Gaps = 39/260 (15%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
            + T L L N  IS+   D F  L   L  L +  N++S                +   +
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKIS---------------KIHEKA 97

Query: 226 FEGPLPLWSFNVTKLYLRDN---SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICN 282
           F   L      + KLY+  N        +P         L +L I  N +          
Sbjct: 98  FSP-LR----KLQKLYISKNHLVEIPPNLPSS-------LVELRIHDNRIRKVPKGVFSG 145

Query: 283 LQQLLTLVISNNNL-SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN 341
           L+ +  + +  N L +        +   L  L +S   L+  IP+      ++  L L +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDH 202

Query: 342 NHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 400
           N I   +    L   S +  L LG NQ+   I       +P+L  L L +N  +  +P  
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

Query: 401 LCKLPALHILDLSHNNLSGI 420
           L  L  L ++ L  NN++ +
Sbjct: 260 LPDLKLLQVVYLHTNNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-------GNLTFLKELY 71
           L +L L  N+L+  +P+ L  LK L+ + L  N+    +  +            +   + 
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGIS 300

Query: 72  LSSNQMNGKF--PENFGQLSAVEVLDLSENQ 100
           L +N +      P  F  ++    +     +
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 28/245 (11%)

Query: 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319
                L++  N +      S  +L+ L  L +S N++       ++ +++L  L++ +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSL-KNCSMMDSLDLGD-NQLSGNIPAWIG 377
           L+     +   L  ++ L L NN I   +P         +  LDLG+  +LS  I     
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAF 181

Query: 378 ESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPD 437
           E + +L  L L     N    P L  L  L  LDLS N+LS I P   G+F G+      
Sbjct: 182 EGLSNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGNHLSAIRP---GSFQGLM----- 231

Query: 438 SVKYEGSLQVV-LKG------SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL 490
                  LQ + +            F     LV + +L+ NNL+       T L HL  +
Sbjct: 232 ------HLQKLWMIQSQIQVIERNAFDNLQSLVEI-NLAHNNLTLLPHDLFTPLHHLERI 284

Query: 491 NLSRN 495
           +L  N
Sbjct: 285 HLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
           T    L L+  +I     + F  L   L+ L ++ N +                 +   +
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIR---------------TIEIGA 107

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQ 285
           F G L     N+  L L DN  +  IP      +  L +L +  N +    S +   +  
Sbjct: 108 FNG-LA----NLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 286 LLTLVISNNNLSGEIPR-LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI 344
           L  L +        I    +  +S+L  L+++  +L  EIP ++  L+ +  L L  NH+
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219

Query: 345 SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCK- 403
           S   P S +    +  L +  +Q+   I     +++ SL  + L  N     +P +L   
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTP 277

Query: 404 LPALHILDLSHNNL 417
           L  L  + L HN  
Sbjct: 278 LHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 71/312 (22%), Positives = 110/312 (35%), Gaps = 59/312 (18%)

Query: 11  SECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKE 69
           S C+ S+   K+      L  ++P  +    N R L L  N     I  +   +L  L+ 
Sbjct: 37  SVCSCSNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEI 92

Query: 70  LYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENIS 129
           L LS N +       F  L+ +  L+L +N+   I     F  LS LKEL L     N  
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA-FVYLSKLKELWL---RNN-- 146

Query: 130 LIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV-RISDTIPDWFWQ 188
               I S  IP +                         L  L L  + R+S      F  
Sbjct: 147 ---PIES--IPSY------------------AFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFS 248
           L   L  L++A   L   IPN         +DLS N                 +R  SF 
Sbjct: 184 LS-NLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS-------------AIRPGSFQ 228

Query: 249 GPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS 308
           G         +  L  L +  + +      +  NLQ L+ + +++NNL+     L++ + 
Sbjct: 229 G---------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279

Query: 309 SLYILDMSNNSL 320
            L  + + +N  
Sbjct: 280 HLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 41/215 (19%)

Query: 285 QLLTLVISNNNLSGEIPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
           Q   ++    NL  E+P     IS +  +L++  N +      S   L  +  L L  NH
Sbjct: 44  QFSKVICVRKNLR-EVP---DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-C 402
           I      +    + +++L+L DN+L+  IP      +  L  L LR+N    +IP     
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 403 KLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYL 462
           ++P+L  LDL        I    G F G+            +L+                
Sbjct: 158 RIPSLRRLDLGELKRLSYISE--GAFEGL-----------SNLRY--------------- 189

Query: 463 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
              ++L+  NL  E+P  LT LI L  L+LS NHL
Sbjct: 190 ---LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 26/228 (11%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
                + L+  RIS      F      L  L +  N L+                + + +
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLA---------------RIDAAA 75

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI-CNLQ 284
           F G L      + +L L DN+    +       +  L  L +    L   +   +   L 
Sbjct: 76  FTG-LA----LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 285 QLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
            L  L + +N L   +P   + ++ +L  L +  N +S     +   L S+  L+L  N 
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
           ++   P + ++   + +L L  N LS  +P      + +L  LRL  N
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 14/201 (6%)

Query: 221 LSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI 280
           + + SF         N+T L+L  N  +  I       +  L  LD+S N+   SV  + 
Sbjct: 47  VPAASFRA-CR----NLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 281 -CNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFL 337
              L +L TL +    L  E+   L+  +++L  L + +N+L   +P+     L ++  L
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL 158

Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
            L  N IS     + +    +D L L  N+++ ++       +  L  L L +N  +  +
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 398 PPE-LCKLPALHILDLSHNNL 417
           P E L  L AL  L L+ N  
Sbjct: 217 PTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 52/257 (20%), Positives = 86/257 (33%), Gaps = 54/257 (21%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
            +++ L  N+++    +S    +NL  L L  N     I  +    L  L++L LS N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 78  NGKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
                   F  L  +  L L     +  +    FR L+ L+ L L    +N         
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL---QDN--------- 139

Query: 137 HWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDEL 196
                  L  +               R+   LT L L+  RIS      F  L  +LD L
Sbjct: 140 ------ALQALP----------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRL 182

Query: 197 DVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG 256
            +  N ++                +  ++F   L      +  LYL  N+ S  +P +  
Sbjct: 183 LLHQNRVA---------------HVHPHAFRD-LG----RLMTLYLFANNLSA-LPTEAL 221

Query: 257 QKIPFLTDLDISFNSLN 273
             +  L  L ++ N   
Sbjct: 222 APLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 46/217 (21%), Positives = 75/217 (34%), Gaps = 26/217 (11%)

Query: 288 TLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE 347
            + +  N +S      +    +L IL + +N L+     +   L  +  L L +N     
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 348 VPPS-LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLP 405
           V P+       + +L L    L   +   +   + +L  L L+ N     +P +    L 
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 153

Query: 406 ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQV-VLKG------SEYVFYT 458
            L  L L  N +S +       F G+            SL   +L          + F  
Sbjct: 154 NLTHLFLHGNRISSVPE---RAFRGL-----------HSLDRLLLHQNRVAHVHPHAFRD 199

Query: 459 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
              L+ L  L +NNLS      L  L  L  L L+ N
Sbjct: 200 LGRLMTL-YLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 39/219 (17%), Positives = 68/219 (31%), Gaps = 39/219 (17%)

Query: 281 CNLQQLLTLVISNNNLSGEIPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
           C  +  +T       L   +P     I  +   + +  N +S     S  +  ++  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
            +N ++     +    ++++ LDL DN    ++       +  L  L L        + P
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 400 E-LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYT 458
                L AL  L L  N L   +P     F  +           G+L             
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDT--FRDL-----------GNLTH----------- 157

Query: 459 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                  + L  N +S         L  L  L L +N +
Sbjct: 158 -------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 76/466 (16%), Positives = 143/466 (30%), Gaps = 90/466 (19%)

Query: 16  SSLLEKLELGFNQLNGD-LPSSLGYLKNLRYLELWHNSF----VGSIPPSIGNLTFLKEL 70
           S  ++ L++   +L+       L  L+  + + L            I  ++     L EL
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 71  YLSSNQMNGKFPENFGQL-----SAVEVLDLSENQWEGIITETH-------FRNLSNLKE 118
            L SN++         Q        ++ L L        +T           R L  L+E
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC----LTGAGCGVLSSTLRTLPTLQE 117

Query: 119 LALNK---QSENISLIFNISSHWIPPFKLTFINIRSCQLGPK----FPTWLRNQTELTTL 171
           L L+        + L+        P  +L  + +  C L         + LR + +   L
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLD--PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 172 VLNNVRISDT----IPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFE 227
            ++N  I++     +          L+ L +    ++      L         ++S +  
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG------IVASKA-- 227

Query: 228 GPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKI---------PFLTDLDISFNSLN----G 274
                   ++ +L L  N        D G              L  L I    +     G
Sbjct: 228 --------SLRELALGSNKLG-----DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 275 SVSKSICNLQQLLTLVISNNNLSGE-----IPRLWSNISSLYILDMSNNSLSGEIPESIG 329
            + + +   + L  L ++ N L  E        L      L  L + + S +        
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334

Query: 330 SLLSV----RFLILCNNHISGEVPPSL-----KNCSMMDSLDLGDNQLSGNIPAWIGESM 380
           S+L+       L + NN +       L     +  S++  L L D  +S +  + +  ++
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394

Query: 381 ---PSLSILRLRSNYFNGTIPPELCKL-----PALHILDLSHNNLS 418
               SL  L L +N        +L +        L  L L     S
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 53/262 (20%)

Query: 262 LTDLDISFNSLNGSVSKSIC-NLQQLLTLVISNNNLSGE----IPRLWSNISSLYILDMS 316
           +  LDI    L+ +    +   LQQ   + + +  L+      I        +L  L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 317 NNSLSGEIPESIGSLL-----SVRFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQ 367
           +N L       +   L      ++ L L N  ++G     +  +L+    +  L L DN 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 368 LSG----NIPAWIGESMPSLSILRLRSNYFNGT----IPPELCKLPALHILDLSHNNLSG 419
           L       +   + +    L  L+L     +      +   L   P    L +S+N+++ 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV 479
                    +G++            L   LK S         L  L  L S  ++ +   
Sbjct: 185 ---------AGVR-----------VLCQGLKDS------PCQLEAL-KLESCGVTSDNCR 217

Query: 480 ELTRLI----HLGTLNLSRNHL 497
           +L  ++     L  L L  N L
Sbjct: 218 DLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 56/353 (15%), Positives = 111/353 (31%), Gaps = 74/353 (20%)

Query: 15  NSSLLEKLELGFNQLN----GDLPSSLGYLKNLRYLELWHNSF----VGSIPPSIGNLTF 66
               LEKL+L +  L+      L S L    + + L + +N      V  +   + +   
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 67  -LKELYLSSNQMNGK----FPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
            L+ L L S  +               +++  L L  N+    + +     L       L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK----LGDVGMAELCP----GL 251

Query: 122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPK----FPTWLRNQTELTTLVLNNVR 177
                             P  +L  + I  C +  K        LR +  L  L L    
Sbjct: 252 LH----------------PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 178 ISDT----IPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW 233
           + D     + +   +    L+ L V     +     +      ++V L+ N         
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFT-----AACCSHFSSV-LAQNR-------- 341

Query: 234 SFNVTKLYLRDNSFSGPIPRDFGQKIPF----LTDLDISFNSLN----GSVSKSICNLQQ 285
              + +L + +N       R+  Q +      L  L ++   ++     S++ ++     
Sbjct: 342 --FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 286 LLTLVISNNNLSGE-----IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLS 333
           L  L +SNN L        +  +      L  L + +   S E+ + + +L  
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 27/185 (14%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
                 L  +S +             LT + ++  ++  +    I     +  L I+N +
Sbjct: 24  AYLNGLLGQSSTANITEAQMNS----LTYITLANINV--TDLTGIEYAHNIKDLTINNIH 77

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
            +     + S +S+L  L +    ++ +   ++  L S+  L + ++     +   +   
Sbjct: 78  AT-NYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
             ++S+DL  N    +I     +++P L  L ++ +  +      +   P L+ L     
Sbjct: 136 PKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 416 NLSGI 420
            + G 
Sbjct: 192 TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           + G+    N   ++ L +       +  + +  L NL  L +          P++  LT 
Sbjct: 59  LTGIEYAHN---IKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
           L  L +S +  +         L  V  +DLS N    I      + L  LK L + 
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 24/161 (14%), Positives = 63/161 (39%), Gaps = 6/161 (3%)

Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321
                      + + + +   +  L  + ++N N++ ++  +     ++  L ++N   +
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTGI-EYAHNIKDLTINNIHAT 79

Query: 322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381
                 I  L ++  L +    ++ +  P+L   + +  LD+  +    +I   I  ++P
Sbjct: 80  N--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLP 136

Query: 382 SLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
            ++ + L  N     I P L  LP L  L++  + +     
Sbjct: 137 KVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 23/142 (16%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 282 NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN 341
             +  L  ++  ++ +       + ++SL  + ++N +++ ++   I    +++ L + N
Sbjct: 21  TFKAYLNGLLGQSSTANITE---AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 342 NHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL 401
            H +   P  +   S ++ L +    ++ +    +   + SL++L +  +  + +I  ++
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKI 132

Query: 402 CKLPALHILDLSHNNLSGIIPP 423
             LP ++ +DLS+N     I P
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 23/192 (11%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
            +    G    +     +   + +L Y+ L + + V  +   I     +K+L +++    
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHAT 79

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFN-ISSH 137
                    LS +E L +        +T     NLS L  L        + +  +     
Sbjct: 80  N--YNPISGLSNLERLRIMGKD----VTSDKIPNLSGLTSL------TLLDISHSAHDDS 127

Query: 138 WIPPF----KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTL 193
            +       K+  I++            L+   EL +L +    + D            L
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFP-KL 183

Query: 194 DELDVAYNELSG 205
           ++L      + G
Sbjct: 184 NQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 18/145 (12%)

Query: 41  KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQ 100
              +           +   +   +  L  + L++  +             ++ L ++   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIH 77

Query: 101 WEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPF----KLTFINIRSCQLGP 156
                       LSNL+ L +           +++S  IP       LT ++I       
Sbjct: 78  ATNY---NPISGLSNLERLRI---MGK-----DVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 157 KFPTWLRNQTELTTLVLN-NVRISD 180
              T +    ++ ++ L+ N  I+D
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITD 151

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 16/187 (8%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
              K  L+  S +  + ++   ++  +  +  + + +     + I  L  +  L ++ N 
Sbjct: 22  ETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNK 76

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           L+ +I  L +N+ +L  L +  N +  ++  S+  L  ++ L L +N IS ++   L + 
Sbjct: 77  LT-DIKPL-TNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHL 130

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
             ++SL LG+N+++ +I       +  L  L L  N  +  I P L  L  L  L LS N
Sbjct: 131 PQLESLYLGNNKIT-DITVL--SRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 185

Query: 416 NLSGIIP 422
           ++S +  
Sbjct: 186 HISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 2e-13
 Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 23/221 (10%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I  L+   N   L  L L  N++  DL SSL  LK L+ L L HN  +  I   + +L  
Sbjct: 80  IKPLTNLKN---LGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNG-ISDING-LVHLPQ 132

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK-QS 125
           L+ LYL +N++         +L+ ++ L L +NQ   I        L+ L+ L L+K   
Sbjct: 133 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLTKLQNLYLSKNHI 187

Query: 126 ENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW 185
            ++  +  +         L  + + S +   K      N     T+   +  +       
Sbjct: 188 SDLRALAGLK-------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV---TPE 237

Query: 186 FWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSF 226
               D   ++ +V ++    +   S  F  P T+  +   F
Sbjct: 238 IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 7e-13
 Identities = 46/273 (16%), Positives = 94/273 (34%), Gaps = 24/273 (8%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I             K  L    +      +   L ++  +   ++  + S+   I  L  
Sbjct: 14  IFPDDAFAE---TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSVQG-IQYLPN 66

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           + +L+L+ N++     +    L  +  L L EN+   I   +  ++L  LK L+L     
Sbjct: 67  VTKLFLNGNKL--TDIKPLTNLKNLGWLFLDENK---IKDLSSLKDLKKLKSLSLEHN-- 119

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
            IS I  +        +L  + + + ++     T L   T+L TL L + +ISD I    
Sbjct: 120 GISDINGLVHLP----QLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD-IVPLA 172

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS 246
               L    L ++ N +S  +    G +    ++L S            N+       N+
Sbjct: 173 GLTKLQ--NLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 247 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
               +  +           ++ ++    +   S
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 1e-12
 Identities = 58/293 (19%), Positives = 105/293 (35%), Gaps = 26/293 (8%)

Query: 193 LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDNSFS--G 249
           + E       +   I     F      +L   S    +      ++ ++   ++      
Sbjct: 1   MGETITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 59

Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
            I     Q +P +T L ++ N L  +  K + NL+ L  L +  N +  ++  L  ++  
Sbjct: 60  GI-----QYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLDENKIK-DLSSL-KDLKK 110

Query: 310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS 369
           L  L + +N +S +I   +  L  +  L L NN I+      L   + +D+L L DNQ+S
Sbjct: 111 LKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166

Query: 370 GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFS 429
            +I       +  L  L L  N+   +    L  L  L +L+L              N  
Sbjct: 167 -DIVPL--AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 430 GMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELT 482
                P      +GSL      S+   Y    +   +   +N +S      +T
Sbjct: 222 ----VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 4e-11
 Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 71/303 (23%)

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           + E    S  +   FP      +     +L +      +T      L+++ ++  N  + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIAN--NS 53

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
           +I  +  I         +T + +   +L    P  L N   L  L L+  +I D      
Sbjct: 54  DIKSVQGIQY----LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--- 104

Query: 187 WQLDLT-LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDN 245
              DL  L  L + +N +S  I             L               +  LYL +N
Sbjct: 105 -LKDLKKLKSLSLEHNGIS-DING-----------LVHLP----------QLESLYLGNN 141

Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS 305
                           +TD+              +  L +L TL + +N +S +I  L +
Sbjct: 142 K---------------ITDIT------------VLSRLTKLDTLSLEDNQIS-DIVPL-A 172

Query: 306 NISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365
            ++ L  L +S N +S ++  ++  L ++  L L +     +      N  + +++   D
Sbjct: 173 GLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 366 NQL 368
             L
Sbjct: 231 GSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 8e-09
 Identities = 41/216 (18%), Positives = 82/216 (37%), Gaps = 47/216 (21%)

Query: 282 NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN 341
              + +   +   +++  +    + ++S+  +  +N+ +   + + I  L +V  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 342 NHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL 401
           N ++ ++ P L N   +  L L +N++  ++ +   + +  L  L L  N  +  I   L
Sbjct: 75  NKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSSL--KDLKKLKSLSLEHNGIS-DING-L 127

Query: 402 CKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLY 461
             LP L  L L +N ++ I        S +             L  +             
Sbjct: 128 VHLPQLESLYLGNNKITDITV-----LSRLT-----------KLDTL------------- 158

Query: 462 LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                 L  N +S  +P  L  L  L  L LS+NH+
Sbjct: 159 -----SLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 7/153 (4%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I  LS  T    L+ L L  NQ++ D+   L  L  L+ L L  N  +  +   +  L  
Sbjct: 146 ITVLSRLTK---LDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNH-ISDLRA-LAGLKN 198

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L  L L S +   K   +   L     +  ++         +   +           +  
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFP 159
           N           I   K  F    +  L   + 
Sbjct: 259 NEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 4e-11
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 20  EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNG 79
             L L    L   +   L  L  + +L+L HN    ++PP++  L  L+ L  S N +  
Sbjct: 444 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-- 498

Query: 80  KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
           +  +    L  ++ L L  N+ +         +   L  L L
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 1e-10
 Identities = 45/304 (14%), Positives = 82/304 (26%), Gaps = 24/304 (7%)

Query: 140 PPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVA 199
                  ++     L   F   L   + + TL+L       ++             + + 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 200 YNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG-QK 258
               +          F      S +  E    L             +       +   +K
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKE--CVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEI--PRLWSNISSLYILD-- 314
              L     S   L         N   LLT+++    L   +         S+L  +D  
Sbjct: 361 STVLQSELESCKEL---QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417

Query: 315 ------MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
                    +    E          VR L L +  ++  V   L+   ++  LDL  N+L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL 475

Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF 428
              +P  +  ++  L +L+   N         +  LP L  L L +N L       +   
Sbjct: 476 R-ALPPAL-AALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQS--AAIQPL 529

Query: 429 SGMK 432
               
Sbjct: 530 VSCP 533

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 45/322 (13%), Positives = 102/322 (31%), Gaps = 15/322 (4%)

Query: 103 GIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWL 162
            ++      ++     ++  +   ++     ++        L  ++     +  + P   
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 163 RNQTELTTLVLNNVRISDTIPD----WFWQLDLTLDELDVAYNELSGSIPNSLGFRFPAT 218
              + +    L    ++D +P       W    +  E  +  +       +S        
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 219 VDLSSN-SFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS 277
            +LS   S      L S    +    +N +         + +  L     +    +    
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-- 411

Query: 278 KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
           K++  ++      + +  L                L +++  L+  +   +  LL V  L
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV-LHLAHKDLT--VLCHLEQLLLVTHL 468

Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-T 396
            L +N +   +PP+L     ++ L   DN L  N+      ++P L  L L +N      
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGV--ANLPRLQELLLCNNRLQQSA 524

Query: 397 IPPELCKLPALHILDLSHNNLS 418
               L   P L +L+L  N+L 
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           +  L +      +  L+L  N+L   LP +L  L+ L  L+   N  + ++   + NL  
Sbjct: 456 LCHLEQLLL---VTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVDG-VANLPR 509

Query: 67  LKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQ 100
           L+EL L +N++      +       + +L+L  N 
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 50/265 (18%), Positives = 96/265 (36%), Gaps = 31/265 (11%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
            IP  +       EL     ++       F     +E +++S+N    +I    F NL  
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLN- 174
           L E+ + K + N+  I   +   +P   L ++ I +  +         +  +   L +  
Sbjct: 81  LHEIRIEK-ANNLLYINPEAFQNLP--NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 175 NVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWS 234
           N+ I     + F  L      L +  N +                ++ +++F G      
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQ---------------EIHNSAFNGT----- 177

Query: 235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294
             + +L L DN+    +P D          LDIS   ++   S  + NL++L     S  
Sbjct: 178 -QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STY 234

Query: 295 NLSGEIPRLWSNISSLYILDMSNNS 319
           NL  ++P L   + +L    ++  S
Sbjct: 235 NLK-KLPTL-EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 6e-11
 Identities = 35/213 (16%), Positives = 63/213 (29%), Gaps = 12/213 (5%)

Query: 215 FPATVDLSSNSF-EGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN 273
                    +   E P  L   N  +L              F      L  ++IS N + 
Sbjct: 10  SNRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVL 67

Query: 274 GSVSKSI-CNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEIPESI-GS 330
             +   +  NL +L  + I   N    I    + N+ +L  L +SN  +   +P+     
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126

Query: 331 LLSVRFLILCNNHISGEVPPSL--KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL 388
            L    L + +N     +  +           L L  N +   I            +   
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 389 RSNYFNGTIPPE-LCKLPALHILDLSHNNLSGI 420
            +N     +P +         ILD+S   +  +
Sbjct: 186 DNNNLE-ELPNDVFHGASGPVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 24/239 (10%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLS-SNQ 76
             +L     +L      +     +L  +E+  N  +  I   +  NL  L E+ +  +N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
           +    PE F  L  ++ L +S    +  + + H  +      L +    +NI++      
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI---QDNINI------ 141

Query: 137 HWIP-------PFKLTFINIRSCQLGPKFPTWLRNQTELTTLVL-NNVRISDTIPDWFWQ 188
           H I         F+   + +    +  +      N T+L  L L +N  + +   D F  
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDNS 246
                  LD++   +  S+P+            S+ + +    L     + +  L   S
Sbjct: 201 AS-GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 33/216 (15%), Positives = 65/216 (30%), Gaps = 37/216 (17%)

Query: 286 LLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCN-NH 343
            + L      L       +S    L  +++S N +   I   +  +L  +  + +   N+
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LC 402
           +    P + +N   +  L + +  +  ++P           +L ++ N    TI      
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 403 KLPA-LHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLY 461
            L     IL L+ N +  I       F+G +                             
Sbjct: 151 GLSFESVILWLNKNGIQEIHN---SAFNGTQ----------------------------- 178

Query: 462 LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
           L  L    +NNL                L++SR  +
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 43/257 (16%), Positives = 86/257 (33%), Gaps = 53/257 (20%)

Query: 162 LRNQTELTTLVLNNVRISDTIP-DWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVD 220
                +L  + ++   + + I  D F  L   L E+ +          N+L       + 
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKA-------NNL-------LY 94

Query: 221 LSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS-KS 279
           ++  +F+  LP    N+  L + +      +P            LDI  N    ++   S
Sbjct: 95  INPEAFQN-LP----NLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 280 ICNLQ-QLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI 338
              L  + + L ++ N +       ++      +    NN+L  E+P  +          
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDV---------- 197

Query: 339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398
                            S    LD+   ++  ++P++  E++  L      S Y    +P
Sbjct: 198 -------------FHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR---STYNLKKLP 240

Query: 399 PELCKLPALHILDLSHN 415
             L KL AL    L++ 
Sbjct: 241 T-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 16  SSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSS 74
           S     L L  N +  ++ +S      L  L L  N+ +  +P  +    +    L +S 
Sbjct: 153 SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
            +++         L  +        +            L  L E +L 
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLT 254

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 13/211 (6%)

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS 277
              ++    +  +P    +   L L +      IP      +P ++ + +S +     + 
Sbjct: 15  DFRVTCKDIQR-IPSLPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLE 72

Query: 278 KSI-CNLQQLLTLVISNNNLSGEIPR-LWSNISSLYILDMSNNSLSGEIPE--SIGSLLS 333
                NL ++  + I N      I       +  L  L + N  L    P+   + S   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

Query: 334 VRFLILCNNHISGEVPPSL--KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
              L + +N     +P +     C+   +L L +N  + ++  +       L  + L  N
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKN 189

Query: 392 YFNGTIPPELCK--LPALHILDLSHNNLSGI 420
            +   I  +          +LD+S  +++ +
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 28/199 (14%), Positives = 66/199 (33%), Gaps = 13/199 (6%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
            + L+L    L      +   L N+  + +  +  +  +      NL+ +  + + + + 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 78  NGKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL--NKQSENISL-IFN 133
                 +   +L  ++ L +     +     T   +      L +  N    +I +  F 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 134 ISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVL-NNVRISDTIPDWFWQLDLT 192
              +     KL      S         +  N T+L  + L  N  ++    D F  +   
Sbjct: 153 GLCNETLTLKLYNNGFTS------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 193 LDELDVAYNELSGSIPNSL 211
              LDV+   ++ ++P+  
Sbjct: 207 PSLLDVSQTSVT-ALPSKG 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 39/204 (19%), Positives = 86/204 (42%), Gaps = 17/204 (8%)

Query: 220 DLSSNSFEGPLPLWSF-NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK 278
               ++    +       +T L       +     +  Q +  L  L++  N +  +   
Sbjct: 25  AAGKSNVTDTVTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDNQI--TDLA 79

Query: 279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI 338
            + NL ++  L +S N L   +  + + + S+  LD+++  ++      +  L +++ L 
Sbjct: 80  PLKNLTKITELELSGNPLK-NVSAI-AGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLY 135

Query: 339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398
           L  N I+  + P L   + +  L +G+ Q+S ++      ++  L+ L+   N  +  I 
Sbjct: 136 LDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKIS-DIS 189

Query: 399 PELCKLPALHILDLSHNNLSGIIP 422
           P L  LP L  + L +N +S + P
Sbjct: 190 P-LASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 55/318 (17%), Positives = 106/318 (33%), Gaps = 33/318 (10%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I       N     K+  G + +      +   L  +  L  +    V +I   +  L  
Sbjct: 12  IFPDPALAN---AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTIEG-VQYLNN 64

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L  L L  NQ+          L+ +  L+LS N  + +   +    L ++K L L     
Sbjct: 65  LIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTST-- 117

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
            I+ +  ++        L  + +   Q+     + L   T L  L + N ++SD  P   
Sbjct: 118 QITDVTPLAGL----SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--L 169

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDN 245
             L   L  L    N++S  I           V L +N      PL +  N+  + L + 
Sbjct: 170 ANLS-KLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227

Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS 305
           + +   P  +   +          N + G     I           ++ NL+  +    +
Sbjct: 228 TITN-QPVFYNNNLVVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279

Query: 306 NISSLYILDMSNNSLSGE 323
           N+S  +   ++  + +  
Sbjct: 280 NVSYTFNQSVTFKNTTVP 297

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 48/253 (18%), Positives = 107/253 (42%), Gaps = 23/253 (9%)

Query: 172 VLNNVRISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPL 230
           +     I+   PD      L    ++    + ++ ++  +       T+           
Sbjct: 3   ITQPTAINVIFPD----PALANAIKIAAGKSNVTDTVTQA-DLDGITTLSAFGTGVTTIE 57

Query: 231 PLWSF-NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTL 289
            +    N+  L L+DN  +   P      +  +T+L++S N L      +I  LQ + TL
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLK---NLTKITELELSGNPL--KNVSAIAGLQSIKTL 112

Query: 290 VISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP 349
            +++  ++ ++  L + +S+L +L +  N ++  I   +  L ++++L + N  +S    
Sbjct: 113 DLTSTQIT-DVTPL-AGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDL-- 166

Query: 350 PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHI 409
             L N S + +L   DN++S +I      S+P+L  + L++N    +    L     L I
Sbjct: 167 TPLANLSKLTTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQI--SDVSPLANTSNLFI 221

Query: 410 LDLSHNNLSGIIP 422
           + L++  ++    
Sbjct: 222 VTLTNQTITNQPV 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 45/210 (21%), Positives = 71/210 (33%), Gaps = 11/210 (5%)

Query: 289 LVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGE 347
           L +S N L       + +   L +LD+S   +   I +    SL  +  LIL  N I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 348 VPPSL-KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELC-KLP 405
           +        S +  L   +  L+ ++  +    + +L  L +  N       PE    L 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 406 ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNL 465
            L  LDLS N +  I    +     M +           +  +  G    F   + L  L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AF-KEIRLKEL 205

Query: 466 MDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
             L +N L         RL  L  + L  N
Sbjct: 206 -ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 19  LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQ 76
           L+ L+L   ++   +       L +L  L L  N  + S+       L+ L++L      
Sbjct: 54  LQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 111

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
           +        G L  ++ L+++ N  +      +F NL+NL+ L L+
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 39/237 (16%)

Query: 42  NLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQ 100
           + + L+L  N     +      +   L+ L LS  ++       +  LS +  L L+ N 
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 101 WEGIITETHFRNLSNLKELALNK-QSENI-SLIFNISSHWIPPFKLTFINIRSCQLGP-K 157
            + +     F  LS+L++L   +    ++ +              L  +N+    +   K
Sbjct: 88  IQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGH------LKTLKELNVAHNLIQSFK 140

Query: 158 FPTWLRNQTELTTLVLNNVRISDTIP----DWFWQLDLTLDELDVAYNELSGSIPNSLGF 213
            P +  N T L  L L++ +I  +I         Q+ L    LD++ N ++  I      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ----- 193

Query: 214 RFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFN 270
                      +F+         + +L L  N     +P     ++  L  + +  N
Sbjct: 194 ---------PGAFKEI------RLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 46/225 (20%)

Query: 292 SNNNLSGEIPRLWSNI-SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP 350
              N   +IP    N+  S   LD+S N L      S  S   ++ L L    I   +  
Sbjct: 15  MELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED 69

Query: 351 ----SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLP 405
               SL +   + +L L  N +  ++       + SL  L         ++       L 
Sbjct: 70  GAYQSLSH---LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124

Query: 406 ALHILDLSHNNLSGIIPPCVGNFSGM-------------KVEPPDSVKYEGSLQVVLKGS 452
            L  L+++HN +     P    FS +             +      ++    +       
Sbjct: 125 TLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP------ 176

Query: 453 EYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                    L   +DLS N ++  +     + I L  L L  N L
Sbjct: 177 --------LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 51/267 (19%), Positives = 87/267 (32%), Gaps = 57/267 (21%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
            IP ++      K L LS N +      +F     ++VLDLS  + + I     +++LS+
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSH 77

Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN 175
           L  L L   + N                +  +                  + L  LV   
Sbjct: 78  LSTLIL---TGN---------------PIQSLA----------LGAFSGLSSLQKLVAVE 109

Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF 235
             ++         L  TL EL+VA+N +  S                   F   L     
Sbjct: 110 TNLASLENFPIGHLK-TLKELNVAHNLIQ-SFK-------------LPEYFSN-LT---- 149

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLT----DLDISFNSLNGSVSKSICNLQQLLTLVI 291
           N+  L L  N        D  + +  +      LD+S N +N  +        +L  L +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 292 SNNNLSGEIPRLWSNISSLYILDMSNN 318
             N L      ++  ++SL  + +  N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRY----LELWHNSFVGSIPPSIGNLTFLKELYLSS 74
           LE L+L  N++     + L  L  +      L+L  N  +  I P       LKEL L +
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDT 209

Query: 75  NQMNGKFPENFGQLSAVEVLDLSENQW 101
           NQ+       F +L++++ + L  N W
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTNPW 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 16  SSLLEKLELGFNQLNGDLP-SSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLS 73
            S    L+L  N L+      +   L NL  L L HN  +  I       +  L+ L LS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96

Query: 74  SNQMNGKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
           SN ++    E  F  L A+EVL L  N    +     F +++ L++L L+
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLS 144

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
               L L  N+ S         ++  L  L +S N LN   S++   +  L  L +S+N+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGEVPP---- 350
           L      L+S++ +L +L + NN +   +  +    +  ++ L L  N IS   P     
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157

Query: 351 SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 389
                  +  LDL  N+L   +P    + +P+     L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 292 SNNNLSGEIPRLWSNISS-LYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGEVP 349
           S   L   +P    ++ S   +LD+S+N+LS    E     L ++  L+L +NH++  + 
Sbjct: 26  SKQQLP-NVP---QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FIS 80

Query: 350 P-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLPAL 407
             +      +  LDL  N L   +  ++   + +L +L L +N+    +       +  L
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQL 138

Query: 408 HILDLSHNNLSGIIP 422
             L LS N +S    
Sbjct: 139 QKLYLSQNQISRFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP----SIGNLTFLKELYLSS 74
           LE L L  N +     ++   +  L+ L L  N      P         L  L  L LSS
Sbjct: 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172

Query: 75  NQMNGKFPENFGQLSA--VEVLDLSENQW 101
           N++      +  +L A     L L  N  
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 20  EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMN 78
            ++ L  N +    P +    K LR ++L +N  +  + P     L  L  L L  N++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
                 F  L ++++L L+ N+   +  +  F++L NL  L+L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLY 136

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 26/156 (16%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
            +T++ L  N+     P  F      L  +D+S N ++     +   L+ L +LV+  N 
Sbjct: 33  TITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           ++     L+  + SL +L ++ N ++  +       L                  +L   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDL-----------------HNLN-- 131

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
                L L DN+L   I       + ++  + L  N
Sbjct: 132 ----LLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 19  LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQ 76
           L  L L  N++  +LP SL   L +L+ L L  N  +  +      +L  L  L L  N+
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK 139

Query: 77  MNGKFPENFGQLSAVEVLDLSENQWE 102
           +       F  L A++ + L++N + 
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW 375
               L+ EIP ++    ++  + L  N I    P +      +  +DL +NQ+S  +   
Sbjct: 19  RGKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPD 74

Query: 376 IGESMPSLSILRLRSNYFNGTIPPEL-CKLPALHILDLSHNNLSGI 420
             + + SL+ L L  N     +P  L   L +L +L L+ N ++ +
Sbjct: 75  AFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL 119

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 14/188 (7%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPF-LTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294
           +  ++     + +  +P D    +P   T L +S N L      ++    +L  L +   
Sbjct: 11  SHLEVNCDKRNLTA-LPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL-K 353
            L+ ++  +   +  L  LD+S+N L   +P    +L ++  L +  N ++  +P    +
Sbjct: 66  ELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALR 121

Query: 354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELC-KLPALHILDL 412
               +  L L  N+L   +P  +    P L  L L +N     +P  L   L  L  L L
Sbjct: 122 GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 413 SHNNLSGI 420
             N+L  I
Sbjct: 180 QENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 43/239 (17%), Positives = 71/239 (29%), Gaps = 57/239 (23%)

Query: 56  SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
           ++PP +        L+LS N +           + +  L+L   +   +        L  
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPV 78

Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN 175
           L  L L+                              QL    P   +    LT L ++ 
Sbjct: 79  LGTLDLS----------------------------HNQL-QSLPLLGQTLPALTVLDVSF 109

Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF 235
            R++         L   L EL +  NEL  ++P  L      T  L              
Sbjct: 110 NRLTSLPLGALRGLG-ELQELYLKGNELK-TLPPGL---LTPTPKL-------------- 150

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294
              KL L +N+ +  +P      +  L  L +  NSL  ++ K       L    +  N
Sbjct: 151 --EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 43/195 (22%)

Query: 305 SNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 364
           S ++S   ++    +L+  +P  +        L L  N +      +L   + +  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC 424
             +L+  +      ++P L  L L  N    ++P     LPAL +LD+S N L+  +P  
Sbjct: 64  RAELT-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPL- 117

Query: 425 VGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNL--MDLSSNNLSGEMPVELT 482
            G   G                               L  L  + L  N L    P  LT
Sbjct: 118 -GALRG-------------------------------LGELQELYLKGNELKTLPPGLLT 145

Query: 483 RLIHLGTLNLSRNHL 497
               L  L+L+ N+L
Sbjct: 146 PTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 49/211 (23%)

Query: 292 SNNNLSGEIPRLWSNI-SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP 350
              NL+  +P    ++     IL +S N L      ++     +  L L    ++     
Sbjct: 18  DKRNLT-ALP---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQ 71

Query: 351 SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLPALHI 409
                 ++ +LDL  NQL  ++P  +G+++P+L++L +  N    ++P      L  L  
Sbjct: 72  VDGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128

Query: 410 LDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNL--MD 467
           L L  N L   +PP  G  +                                   L  + 
Sbjct: 129 LYLKGNELK-TLPP--GLLTP-------------------------------TPKLEKLS 154

Query: 468 LSSNNLSGEMPVEL-TRLIHLGTLNLSRNHL 497
           L++NNL+ E+P  L   L +L TL L  N L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 28/190 (14%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
            + T L L+   +              L +L++   EL+  +          T+DLS N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQ 88

Query: 226 -------FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK 278
                   +  LP     +T L +  N  +  +P    + +  L +L +  N L     K
Sbjct: 89  LQSLPLLGQT-LP----ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNEL-----K 137

Query: 279 SI-----CNLQQLLTLVISNNNLSGEIPR-LWSNISSLYILDMSNNSLSGEIPESIGSLL 332
           ++         +L  L ++NNNL+ E+P  L + + +L  L +  NSL   IP+      
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSH 195

Query: 333 SVRFLILCNN 342
            + F  L  N
Sbjct: 196 LLPFAFLHGN 205

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 20  EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMN 78
           EKL+L    L     ++   L  L +L L +N    ++   +  +LT L  L L++NQ+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 79  GKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
              P   F  L+ ++ L L  NQ +  +    F  L+ LKEL LN
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLN 139

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
           L  L L +NQL          L  L  L L +N    S+P  +  +LT L +LYL  NQ+
Sbjct: 61  LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL 119

Query: 78  NGKFPEN-FGQLSAVEVLDLSENQW----EGIITETHFRNLSNLKELALN 122
               P   F +L+ ++ L L+ NQ      G      F  L+NL+ L+L+
Sbjct: 120 K-SLPSGVFDRLTKLKELRLNTNQLQSIPAGA-----FDKLTNLQTLSLS 163

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICN-LQQLLTLVISNN 294
           +  KL L+    +      F + +  LT L++ +N L  ++S  + + L +L TL ++NN
Sbjct: 36  DTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANN 93

Query: 295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGEVPP--- 350
            L+     ++ +++ L  L +  N L   +P  +   L  ++ L L  N +   +P    
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 351 -SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
             L N   + +L L  NQL  ++P    + +  L  + L  N
Sbjct: 152 DKLTN---LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 46/273 (16%), Positives = 96/273 (35%), Gaps = 24/273 (8%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I             K  L    +      +   L ++  +   ++  + S+   I  L  
Sbjct: 17  IFSDDAFAE---TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSVQG-IQYLPN 69

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           + +L+L+ N++     +    L  +  L L EN+   +   +  ++L  LK L+L     
Sbjct: 70  VTKLFLNGNKL--TDIKPLANLKNLGWLFLDENK---VKDLSSLKDLKKLKSLSLEHN-- 122

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
            IS I  +        +L  + + + ++     T L   T+L TL L + +ISD +P   
Sbjct: 123 GISDINGLVHLP----QLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--L 174

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS 246
             L   L  L ++ N +S  +    G +    ++L S            N+       N+
Sbjct: 175 AGLT-KLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 247 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
               +  +           ++ ++    +   S
Sbjct: 233 DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 265

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           I  L+   N   L  L L  N++  DL SSL  LK L+ L L HN  +  I   + +L  
Sbjct: 83  IKPLANLKN---LGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNG-ISDING-LVHLPQ 135

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK-QS 125
           L+ LYL +N++         +L+ ++ L L +NQ   I        L+ L+ L L+K   
Sbjct: 136 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLTKLQNLYLSKNHI 190

Query: 126 ENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW 185
            ++  +  +         L  + + S +   K      N     T+   +  +   +   
Sbjct: 191 SDLRALAGLK-------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPE 240

Query: 186 FWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG 228
               D   ++ +V ++    +   S  F  P T+  +   F G
Sbjct: 241 IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 21/204 (10%)

Query: 220 DLSSNSFEGPLPLWSF-NVTKLYLRDNSFS--GPIPRDFGQKIPFLTDLDISFNSLNGSV 276
           +L   S    +      ++ ++   ++       I     Q +P +T L ++ N L  + 
Sbjct: 30  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNKL--TD 82

Query: 277 SKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336
            K + NL+ L  L +  N +  ++  L  ++  L  L + +N +S +I   +  L  +  
Sbjct: 83  IKPLANLKNLGWLFLDENKVK-DLSSL-KDLKKLKSLSLEHNGIS-DI-NGLVHLPQLES 138

Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396
           L L NN I+      L   + +D+L L DNQ+S +I       +  L  L L  N  + +
Sbjct: 139 LYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKN--HIS 191

Query: 397 IPPELCKLPALHILDLSHNNLSGI 420
               L  L  L +L+L        
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 35/161 (21%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321
               ++   S+  +V+++   L  +  ++ +N+++   +  +   + ++  L ++ N L+
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGI-QYLPNVTKLFLNGNKLT 81

Query: 322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381
            +I + + +L ++ +L L  N +  ++   LK+   + SL L  N +S +I       +P
Sbjct: 82  -DI-KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DINGL--VHLP 134

Query: 382 SLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
            L  L L +N    T    L +L  L  L L  N +S I+P
Sbjct: 135 QLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVP 173

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
           L K+    N++      +      +  + L  N    ++   +   L  LK L L SN++
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI 117

Query: 78  NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
                ++F  LS+V +L L +NQ   +     F  L +L  L L 
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 25/156 (16%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
              +L L +N F+        +K+P L  ++ S N +      +      +  +++++N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           L     +++  + SL  L + +N ++  +       L                  S++  
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGL-----------------SSVR-- 132

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
                L L DNQ++  +     +++ SLS L L +N
Sbjct: 133 ----LLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 42  NLRYLELWHNSFVGSIPPSIG--NLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN 99
               L L +N F   +  +     L  L+++  S+N++       F   S V  + L+ N
Sbjct: 33  YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 100 QWEGIITETHFRNLSNLKELALN 122
           + E +  +  F+ L +LK L L 
Sbjct: 92  RLENVQHKM-FKGLESLKTLMLR 113

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 313 LDMSNNSLSGEIPESI-GSLLSVRFLILCNNHISGEVPP----SLKNCSMMDSLDLGDNQ 367
           L ++NN  +      I   L  +R +   NN I+ ++             ++ + L  N+
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG---VNEILLTSNR 92

Query: 368 LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLPALHILDLSHNNLSGI 420
           L  N+   + + + SL  L LRSN     +  +    L ++ +L L  N ++ +
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTV 144

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 33/183 (18%), Positives = 73/183 (39%), Gaps = 17/183 (9%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
           N  K  L   S +  + +    ++  + + +   +++       +     L  L +S+N 
Sbjct: 20  NAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQ 74

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           +S ++  L  +++ L  L ++ N L   +  +      +  L L NN +      SL + 
Sbjct: 75  IS-DLSPL-KDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELRD--TDSLIHL 127

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
             ++ L + +N+L  +I       +  L +L L  N    T    L +L  ++ +DL+  
Sbjct: 128 KNLEILSIRNNKLK-SIVM--LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQ 182

Query: 416 NLS 418
              
Sbjct: 183 KCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           +    E +    ++      + +   L + + +  NL+ L L HN  +  + P + +LT 
Sbjct: 34  LVSQKELSG---VQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTK 86

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L+EL ++ N++          L     L L  N+   +       +L NL+ L++     
Sbjct: 87  LEELSVNRNRLKNLNGIPSACL---SRLFLDNNE---LRDTDSLIHLKNLEILSIRNN-- 138

Query: 127 NISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDT 181
            +  I  +        KL  +++   ++       L    ++  + L   +  + 
Sbjct: 139 KLKSIVMLGFL----SKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 14/161 (8%)

Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321
               ++   S+  +   S   L  +      N+N+   +  +    ++L  L +S+N +S
Sbjct: 21  AVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SLAGM-QFFTNLKELHLSHNQIS 76

Query: 322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381
            ++   +  L  +  L +  N +             +  L L +N+L  +  +     + 
Sbjct: 77  -DL-SPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELR-DTDSL--IHLK 128

Query: 382 SLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
           +L IL +R+N    +I   L  L  L +LDL  N ++    
Sbjct: 129 NLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
              L   +   +   +++ ++      +S +   +  N+++       +    +++ L L
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVSQ-KELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
            +N IS ++ P LK+ + ++ L +  N+L  N+    G     LS L L +N        
Sbjct: 71  SHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLN---GIPSACLSRLFLDNN--ELRDTD 122

Query: 400 ELCKLPALHILDLSHNNLSGIIP 422
            L  L  L IL + +N L  I+ 
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 36/245 (14%), Positives = 82/245 (33%), Gaps = 20/245 (8%)

Query: 35  SSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL 94
                L N     L   S V  +      L+ ++     ++ +  +        + ++ L
Sbjct: 13  FPDPGLANAVKQNLGKQS-VTDLVS-QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 95  DLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQL 154
            LS NQ   I   +  ++L+ L+EL++N     +  +  I S       L+ + + + +L
Sbjct: 69  HLSHNQ---ISDLSPLKDLTKLEELSVN--RNRLKNLNGIPSA-----CLSRLFLDNNEL 118

Query: 155 GPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFR 214
             +    L +   L  L + N ++   +      L   L+ LD+  NE++ +       +
Sbjct: 119 --RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLS-KLEVLDLHGNEIT-NTGGLTRLK 172

Query: 215 FPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 274
               +DL+          +   +       +     I   +        D  + +     
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVY 232

Query: 275 SVSKS 279
           +   S
Sbjct: 233 TDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 15/130 (11%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           ++G+        L +L L  N+L      SL +LKNL  L + +N  + SI   +G L+ 
Sbjct: 100 LNGIPSAC----LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNK-LKSIVM-LGFLSK 151

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSE 126
           L+ L L  N++         +L  V  +DL+  +          +    L      K  +
Sbjct: 152 LEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVKDPD 205

Query: 127 NISL-IFNIS 135
              +  + IS
Sbjct: 206 GRWISPYYIS 215

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 27  NQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQMNGKFPENF 85
                D    L   +NL  L + +   +  +    +  L  L+ L +  + +    P+ F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 86  GQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
                +  L+LS N  E +  +T  + LS L+EL L+
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKT-VQGLS-LQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
           + C    + +    L     +  L + + Q   ++       +  L  L +  +     +
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71

Query: 398 PPE-LCKLPALHILDLSHNNLSGIIPPCVGNFS 429
            P+     P L  L+LS N L  +    V   S
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 288 TLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP-ESIGSLLSVRFLILCNNHISG 346
           + +    + + +         +L  L + N      +    +  L  +R L +  + +  
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 347 EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 394
             P +      +  L+L  N L       +     SL  L L  N  +
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 263 TDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLW-SNISSLYILDMSNNSLS 321
           + L  + +         +   + L  L I N      +       +  L  L +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
              P++      +  L L  N +      +++  S+   L L  N L
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ-ELVLSGNPL 115

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
            +KL+L  N+L+     +   L  LR L L  N    ++P  I   L  L+ L+++ N++
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 78  NGKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
               P   F QL  +  L L  NQ +  +    F +L+ L  L+L 
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLG 141

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321
              LD+  N L+   SK+   L +L  L +++N L      ++  + +L  L +++N L 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 322 GEIPESI-GSLLSVRFLILCNNHISGEVPP----SLKNCSMMDSLDLGDNQLSGNIPAWI 376
             +P  +   L+++  L L  N +   +PP    SL     +  L LG N+L  ++P  +
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGV 152

Query: 377 GESMPSLSILRLRSNYFNGTIPPELC-KLPALHILDLSHNNLSGI 420
            + + SL  LRL +N     +P     KL  L  L L +N L  +
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 220 DLSSNSFEGPLPLWSF----NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS 275
           DL SN     LP  +F     +  LYL DN     +P    +++  L  L ++ N L  +
Sbjct: 43  DLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 276 VSKSI-CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLS 333
           +   +   L  L  L +  N L    PR++ +++ L  L +  N L   +P+ +   L S
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 334 VRFLILCNNHISGEVPPSL-KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
           ++ L L NN +   VP       + + +L L +NQL   +P    +S+  L +L+L+ N
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 19  LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQ 76
           L  L LG+N+L   LP  +   L +L+ L L++N  +  +P      LT LK L L +NQ
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 77  MNGKFPENFGQLSAVEVLDLSENQW 101
           +       F  L  +++L L EN W
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQENPW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 20/188 (10%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA--TVDLSS 223
            +   L L + ++S      F +L   L  L +  N+L  ++P  +        T+ ++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 224 NS--------FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS 275
           N         F+  + L      +L L  N     +P      +  LT L + +N L  S
Sbjct: 95  NKLQALPIGVFDQLVNL-----AELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-S 147

Query: 276 VSKSIC-NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSV 334
           + K +   L  L  L + NN L       +  ++ L  L + NN L      +  SL  +
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 335 RFLILCNN 342
           + L L  N
Sbjct: 208 KMLQLQEN 215

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 44/295 (14%), Positives = 95/295 (32%), Gaps = 53/295 (17%)

Query: 162 LRNQTELTTLVLNNVRISDT----IPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPA 217
                 +T+L L+   +       +   F     ++  L+++ N L     + L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-----V 72

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPF----LTDLDISFNSLN 273
            +  +  +          NVT L L  N  S     +  + +      +T LD+ +N  +
Sbjct: 73  QILAAIPA----------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 274 GSVSKSICNL-----QQLLTLVISNNNLSGE-----IPRLWSNISSLYILDMSNNSLSGE 323
              S             + +L +  N+L  +     I  L +  +++  L++  N+L+ +
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 324 IPESIGSLL-----SVRFLILCNNHISGEVPPSL-----KNCSMMDSLDLGDNQLSGNIP 373
               +   L     SV  L L  N +  +    L        + + SL+L  N L G   
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 374 AWIGESM---PSLSILRLRSNYFNGTIPPE-------LCKLPALHILDLSHNNLS 418
             +         L  + L  +        +          +  + ++D +   + 
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 32/217 (14%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPF----LTDLDISFNSLNGSVSKSICNL-----QQL 286
           +VT L L  NS       +  Q +      +T L++S N L+   S  +          +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 287 LTLVISNNNLSGE-----IPRLWSNISSLYILDMSNNSLSGEIPESIGSLL-----SVRF 336
             L +  N+ S +          +  +S+  L++  N L  +  + +  +L     +V  
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 337 LILCNNHISGEVPPSL-----KNCSMMDSLDLGDNQLSGNIPAWIGESM----PSLSILR 387
           L L  N+++ +    L        + + SLDL  N L     A +          +  L 
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 388 LRSNYFNGTIPPELCKL----PALHILDLSHNNLSGI 420
           L  N  +G     L  L      L  + L ++ +  +
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 38/275 (13%), Positives = 84/275 (30%), Gaps = 48/275 (17%)

Query: 143 KLTFINIRSCQLGPK-----FPTWLRNQTELTTLVLNNVRISDT----IPDWFWQLDLTL 193
            +T +++    L           +      +T+L L+   +       +      +   +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 194 DELDVAYNELSGSIPNSLGFRFPA------TVDLSSNSFEGP--------LPLWSFNVTK 239
             L+++ N LS    + L     A       +DL  N F                 ++T 
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 240 LYLRDNSFSGPIPRDFGQKIPF----LTDLDISFNSLNGSVSKSICNL-----QQLLTLV 290
           L LR N        +  Q +      +  L++  N+L       +          + +L 
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 291 ISNNNLSGE-----IPRLWSNISSLYILDMSNNSLSGEIPESIGSLL----SVRFLILCN 341
           +S N L  +          S  + +  L++  N L G   E++  L      ++ + L  
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 342 NHISGEVP-------PSLKNCSMMDSLDLGDNQLS 369
           + +             +  N   +  +D    ++ 
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 58/269 (21%)

Query: 262 LTDLDISFNSLNGSVSKSIC-----NLQQLLTLVISNNNLSGE-----IPRLWSNISSLY 311
           +T L++S NSL    S  +          + +L +S N LS +     +  L +   ++ 
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112

Query: 312 ILDMSNNSLSGEIPESIGSLL-----SVRFLILCNNHISGE----VPPSLKNC-SMMDSL 361
           +LD+  N  S +              S+  L L  N +  +    +   L    + ++SL
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 362 DLGDNQLSGNIPAWIGESMP----SLSILRLRSNYFNGTIPPELCKL-----PALHILDL 412
           +L  N L+    A + + +     S++ L L +N        EL  +       +  L+L
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232

Query: 413 SHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNN 472
             N L G           ++           +L+++           L  V L      N
Sbjct: 233 CLNCLHG---------PSLE-----------NLKLLKDSL-----KHLQTVYLDYDIVKN 267

Query: 473 LSGEMPVELTRLI----HLGTLNLSRNHL 497
           +S E    L         +  ++ +   +
Sbjct: 268 MSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 9   GLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLK 68
            LS        + L L  N +   + SSL  ++NLR L L  N     I         L+
Sbjct: 43  TLSTLKA---CKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 69  ELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
           EL++S NQ+         +L  + VL +S N+            L  L++L L
Sbjct: 97  ELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 7   IDGLSECTNSSLLE-KLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLT 65
            +       +   + +L      +   + ++L  LK  ++L L  N+    I   +  + 
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS-LSGME 70

Query: 66  FLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
            L+ L L  N +  K          +E L +S NQ   +   +    L NL+ L ++
Sbjct: 71  NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL---SGIEKLVNLRVLYMS 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 13/153 (8%)

Query: 278 KSICNLQQLLTLVISNNNLSGEIPRLW------SNISSLYILDMSNNSLSGEIPESIGSL 331
           +     + ++        L G IP +       S + +   L +S N++  +I  S+  +
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGM 69

Query: 332 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
            ++R L L  N I  ++         ++ L +  NQ++ ++     E + +L +L + +N
Sbjct: 70  ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSGI--EKLVNLRVLYMSNN 125

Query: 392 YFNGTIPPE-LCKLPALHILDLSHNNLSGIIPP 423
                   + L  L  L  L L+ N L      
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 44/222 (19%), Positives = 76/222 (34%), Gaps = 39/222 (17%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKI---PFLTDLDISFNSL-------------NGSVSKS 279
            +  + L DN+F           +     L  L +  N L               +V+K 
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 280 ICNLQQLLTLVISNNNLSGE----IPRLWSNISSLYILDMSNNSLSGE-IPESIGSLLSV 334
             N   L +++   N L         + + +   L+ + M  N +  E I   +   L+ 
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 335 ----RFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM-----P 381
               + L L +N  +      +  +LK+   +  L L D  LS    A + ++       
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 382 SLSILRLRSNYFNGTIPPELC-----KLPALHILDLSHNNLS 418
            L  LRL+ N         L      K+P L  L+L+ N  S
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 52/380 (13%), Positives = 106/380 (27%), Gaps = 107/380 (28%)

Query: 14  TNSSLLEKLELGFNQLNGD----LPSSLGYLKNLRYLELWHNSF----VGSIPPSIGNLT 65
              S+ E   L  + +  +    + + L    +++ + L  N+        +  +I +  
Sbjct: 2   ARFSI-EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 66  FLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQS 125
            L+    S         E    L  +                        L+ L    + 
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLL------------------------LQALLKCPK- 95

Query: 126 ENISLIFNISSHWIPPFKLTFINIRSCQLGPK----FPTWLRNQTELTTLVLNNVRISD- 180
                             L  + +     GP        +L   T L  L L+N  +   
Sbjct: 96  ------------------LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137

Query: 181 -----------TIPDWFWQLDLTLDELDVAYNELS--GSIPNSLGFRFPAT---VDLSSN 224
                         +   +    L  +    N L        +  F+       V +  N
Sbjct: 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197

Query: 225 SF--EGPLPLWSF------NVTKLYLRDNSFSGPIPRDFG--------QKIPFLTDLDIS 268
               EG   L          +  L L+DN+F+       G        +  P L +L ++
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----HLGSSALAIALKSWPNLRELGLN 252

Query: 269 FNSLNGSVSKSICNL------QQLLTLVISNNNLSGE-----IPRLWSNISSLYILDMSN 317
              L+   + ++ +         L TL +  N +  +        +   +  L  L+++ 
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312

Query: 318 NSLS--GEIPESIGSLLSVR 335
           N  S   ++ + I  + S R
Sbjct: 313 NRFSEEDDVVDEIREVFSTR 332

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 44/183 (24%)

Query: 262 LTDLDISFNSLNG----SVSKSICNLQQLLTLVISNNNLS-------GEIPRLWSNISSL 310
           +    +  +++      SV   +     +  +V+S N +         E      ++   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
              D+    +  EIPE++  LL                  +L  C  + ++ L DN    
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQ-----------------ALLKCPKLHTVRLSDNAFGP 108

Query: 371 NIPAWIGE---SMPSLSILRLRSNYF-------------NGTIPPELCKLPALHILDLSH 414
                + +       L  L L +N                  +  +    P L  +    
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 415 NNL 417
           N L
Sbjct: 169 NRL 171

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 21/113 (18%)

Query: 19  LEKLELGFNQLNGDLPSSLG---YLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSS 74
           +  L LG N+L       +     L NL YL L  N    S+P  +   LT LKEL L  
Sbjct: 65  VRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 75  NQMNGKFPEN-FGQLSAVEVLDLSENQW----EGIITETHFRNLSNLKELALN 122
           NQ+    P+  F +L+ +  L+L+ NQ     +G+     F  L+NL EL L+
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-----FDKLTNLTELDLS 165

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 20  EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGN-LTFLKELYLSSNQMN 78
             L+L  N L          L +L  L L  N    S+P  + N LT L  L LS+NQ+ 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 79  GKFPENFGQLSAVEVLDLSENQW----EGIITETHFRNLSNLKELALN 122
                 F +L+ ++ L L+ NQ     +G+     F  L+ LK+L L 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGV-----FDKLTQLKDLRLY 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 282 NLQQLLTLVISNNNLS-GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC 340
               +  LV+ N   + G+I  L +   +L  L + N  L   +  ++  L  ++ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
            N I G +    +    +  L+L  N+L         + +  L  L L + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 15  NSSLLEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
             + + +L L   + N G +        NL +L L +   + S+   +  L  LK+L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSN-LPKLPKLKKLELS 79

Query: 74  SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
            N++ G       +L  +  L+LS N+ + I T    + L  LK L L
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLL---TLVIS 292
            V +L L +   +         +   L  L +    L      S+ NL +L     L +S
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKKLELS 79

Query: 293 NNNLSGEIPRLWSNISSLYILDMSNNSLS--GEIPESIGSLLSVRFLILCNNHIS 345
            N + G +  L   + +L  L++S N L     + E +  L  ++ L L N  ++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 330 SLLSVRFLILCNNHIS-GEVPPSLKNCSMMDSLDLGDNQLS--GNIPAWIGESMPSLSIL 386
           +  +VR L+L N   + G++         ++ L L +  L    N+P      +P L  L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKL 76

Query: 387 RLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
            L  N   G +     KLP L  L+LS N L  I
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 15  NSSLLEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
             S +++L L  ++ N G L       + L +L   +   + SI  ++  L  LK+L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIA-NLPKLNKLKKLELS 72

Query: 74  SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
            N+++G       +   +  L+LS N+ + + T    + L NLK L L
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 282 NLQQLLTLVISNN-NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC 340
               +  LV+ N+ +  G++  L      L  L   N  L+  I  ++  L  ++ L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
           +N +SG +    + C  +  L+L  N++         + + +L  L L + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQ---QLLTLVIS 292
           +V +L L ++  +         +   L  L      L      SI NL    +L  L +S
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKLELS 72

Query: 293 NNNLSGEIPRLWSNISSLYILDMSNNSLSG-EIPESIGSLLSVRFLILCNNHIS 345
           +N +SG +  L     +L  L++S N +      E +  L +++ L L N  ++
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 20  EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMN 78
           + L L  NQ+    P     L NL+ L L  N    ++P  +  +LT L  L L +NQ+ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 79  GKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
              P   F +L  ++ L +  N+   +        L++L  LAL+
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALD 143

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 19  LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQM 77
           L  L+LG NQL   LPS++   L +L+ L +  N     +P  I  LT L  L L  NQ+
Sbjct: 90  LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147

Query: 78  NGKFPENFGQLSAVEVLDLSENQW 101
                  F +LS++    L  N W
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGNPW 171

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 20  EKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
            +L L  N+L       L G L +L  LEL  N     I P+     + ++EL L  N++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 78  NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
                + F  L  ++ L+L +NQ    +    F +L++L  L L 
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLA 134

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 21/201 (10%), Positives = 53/201 (26%), Gaps = 35/201 (17%)

Query: 232 LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVI 291
                   +   +   S     D    +  +  L+        ++S        L +L I
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 292 SNNNLSGEIPR-----LWSNISSLYILDMSNNSLSGEIPESIGSLLS------VRFLILC 340
            +  L   +          N+  L +     +            L S      +++L + 
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 341 NNHISGEVPPSLKNCSMMD---SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
           +      V        ++    ++D+    L+      + + +                 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD---------------- 304

Query: 398 PPELCKLPALHILDLSHNNLS 418
                K+  L  +++ +N LS
Sbjct: 305 -----KIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 38/235 (16%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
                L   ++   +    W  Q+DL+               P          + +   +
Sbjct: 139 AHFEGLFWGDIDFEEQEISWIEQVDLS---------------PVLDAMPLLNNLKIKGTN 183

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVSKSICNLQ 284
                     N+  L +        +  D     +P L  L +     +      +   +
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243

Query: 285 QLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGS---LLSVRFLILCN 341
            L +                    +L  L + +      + E       L  +  + +  
Sbjct: 244 PLFSK---------------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288

Query: 342 NHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY 392
             ++ E    +   +     +  +++  N LS  +   + +S+P    +     Y
Sbjct: 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEY 343

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 27/242 (11%), Positives = 65/242 (26%), Gaps = 17/242 (7%)

Query: 190 DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSG 249
            L  ++    Y E    +   +             + EG   +      K        + 
Sbjct: 55  KLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITI 114

Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
                 G+    + D  +                       IS      ++  +   +  
Sbjct: 115 GXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPL 173

Query: 310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL--KNCSMMDSLDL---- 363
           L  L +   +    +        +++ L + +  +   V   +   +   ++ L L    
Sbjct: 174 LNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 364 ----GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCK---LPALHILDLSHNN 416
                D  ++   P +  +  P+L  L +        +     +   LP L  +D+S   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 417 LS 418
           L+
Sbjct: 291 LT 292

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 35/171 (20%)

Query: 262 LTDLDISFNSLNGSVSKSICN-LQQLLTLVISNNNLSGE-----IPRLWSNISSLYILDM 315
           L +++++   L+ +  +++     +   L +  N+L  E        L  +   +  L +
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 316 SNNSLSGEIPESIGSLLSV----RFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQ 367
           SNN L+      +   L+       L L +  +  E    +   L     +  L++  N 
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 368 LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418
                      +  +L+    R +             P+L +L L  N LS
Sbjct: 223 AG-------DTAALALARA-AREH-------------PSLELLHLYFNELS 252

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 19  LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQ 76
           L KL L  NQ+   LP  +   L  L  L L  N    S+P  +   LT LKEL L +NQ
Sbjct: 54  LTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQ 111

Query: 77  MNGKFPENFGQLSAVEVLDLSENQW 101
           +       F +L++++ + L  N W
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTNPW 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 44  RYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPEN-FGQLSAVEVLDLSENQWE 102
             L L  N F   +P  + N   L  + LS+N+++       F  ++ +  L LS N+  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 103 GIITETHFRNLSNLKELALN 122
             I    F  L +L+ L+L+
Sbjct: 92  C-IPPRTFDGLKSLRLLSLH 110

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 12/112 (10%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSL----NGSVSKSICNLQQLLTLVI 291
           +VT+LYL  N F+  +P++       LT +D+S N +    N S S    N+ QLLTL++
Sbjct: 32  DVTELYLDGNQFTL-VPKEL-SNYKHLTLIDLSNNRISTLSNQSFS----NMTQLLTLIL 85

Query: 292 SNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLSVRFLILCNN 342
           S N L    PR +  + SL +L +  N +S  +PE     L ++  L +  N
Sbjct: 86  SYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 326 ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS--GNIPAWIGESMPSL 383
               + +  R L L    I   +          D++D  DN++      P      +  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP-----LLRRL 66

Query: 384 SILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418
             L + +N            LP L  L L++N+L 
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
              +L LR      P+  + G  +     +D S N +          L++L TL+++NN 
Sbjct: 20  RDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNR 75

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLS--GEIPESIGSLLSVRFLILCNNHIS 345
           +      L   +  L  L ++NNSL   G++ + + SL S+ +L +  N ++
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 35  SSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL 94
           +        R L+L     +  I      L     +  S N++  +  + F  L  ++ L
Sbjct: 13  AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 69

Query: 95  DLSENQWEGIITETHFRNLSNLKELALNK 123
            ++ N+    I E   + L +L EL L  
Sbjct: 70  LVNNNRICR-IGEGLDQALPDLTELILTN 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 76/494 (15%), Positives = 154/494 (31%), Gaps = 113/494 (22%)

Query: 5   DFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKN-LRYLELWHNSFVGSIPPSIGN 63
           DF  G  +     +L   E  F   N D        K+ L   E+ H   + S   ++  
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDH--IIMS-KDAVSG 63

Query: 64  LTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123
              L    LS         E   Q    EVL ++   +   +     +       +    
Sbjct: 64  TLRLFWTLLSK-------QEEMVQKFVEEVLRINYK-F---LMSP-IKTEQRQPSMMTRM 111

Query: 124 QSENISLIFNISSHWIPPFKLT----FINIRSC--QLGP-------------KFPTWL-- 162
             E    ++N  +     + ++    ++ +R    +L P             K  TW+  
Sbjct: 112 YIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVAL 168

Query: 163 ---RNQTELTT-------LVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG 212
               +             L L N    +T+ +   +L   +D    + ++ S +I   + 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI- 227

Query: 213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD-------NSFSGPIPRDFGQKIPFLTDL 265
                            L    +    L L +       N+F      +   KI  LT  
Sbjct: 228 -------HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF------NLSCKI-LLTTR 273

Query: 266 DIS-FNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEI 324
                + L+ + +  I      +TL         E+  L         LD     L  E+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLT------PDEVKSLLLK-----YLDCRPQDLPREV 322

Query: 325 PESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD----LGDNQLSGNIPAWIGESM 380
                +   +  +I        E   S+++   + + D    +  ++L+  I   I  S+
Sbjct: 323 LT--TNPRRLS-II-------AE---SIRD--GLATWDNWKHVNCDKLT-TI---IESSL 363

Query: 381 PSLSILRLRSNYFNGTIPPELCKLPA--LHIL--DLSHNNLSGIIPPCVGNFSGMKVEPP 436
             L     R  +   ++ P    +P   L ++  D+  +++  ++      +S ++ +P 
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPK 422

Query: 437 DSVKYEGSLQVVLK 450
           +S     S+ + LK
Sbjct: 423 ESTISIPSIYLELK 436

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	497
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.7e-55  Score=461.05  Aligned_cols=465  Identities=31%  Similarity=0.440  Sum_probs=350.3

Q ss_pred             CccEEEcCCCCCcccCCcc---ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEE
Q 037822           18 LLEKLELGFNQLNGDLPSS---LGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL   94 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   94 (497)
                      +|++|++++|.+++..+..   +..+++|++|++++|.+.+..|  +..+++|++|++++|.+++..|. +.++++|++|
T Consensus       152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L  228 (768)
T 3rgz_A          152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL  228 (768)
T ss_dssp             TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred             CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEE
Confidence            7777777777776555544   4555555555555555543332  24455555555555555543333 5555555555


Q ss_pred             EcCCCccccccChhhhhcCCCCceEeccCccccc------------------eeeecccCCCCCC-ccccEEEccCCcCC
Q 037822           95 DLSENQWEGIITETHFRNLSNLKELALNKQSENI------------------SLIFNISSHWIPP-FKLTFINIRSCQLG  155 (497)
Q Consensus        95 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------~~~~~~~~~~~~~-~~L~~l~l~~~~~~  155 (497)
                      ++++|.+++.++. .+.++++|++|++++|.+..                  .....++..+... ++|++|++++|++.
T Consensus       229 ~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~  307 (768)
T 3rgz_A          229 DISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY  307 (768)
T ss_dssp             ECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred             ECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence            5555555443333 44455555555554443210                  2233555555554 77888888888777


Q ss_pred             CCCCccccCCCCccEEEeeccccccccCch-hhhcccCccEEEcccccccccCCccc-ccc-CCCEEEccCCccccCCCC
Q 037822          156 PKFPTWLRNQTELTTLVLNNVRISDTIPDW-FWQLDLTLDELDVAYNELSGSIPNSL-GFR-FPATVDLSSNSFEGPLPL  232 (497)
Q Consensus       156 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-~l~~l~l~~~~~~~~~~~  232 (497)
                      ...|..++.+++|++|++++|.+.+..|.. +..+ ++|++|++++|.+.+..|..+ .++ .++.+++++|.+.+..+.
T Consensus       308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~  386 (768)
T 3rgz_A          308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM-RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP  386 (768)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC-TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred             CccchHHhcCCCccEEECCCCcccCcCCHHHHhcC-CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence            777777888888888888888877666665 4444 578888888888776666655 344 788888888887765554


Q ss_pred             C-----ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccC
Q 037822          233 W-----SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNI  307 (497)
Q Consensus       233 ~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  307 (497)
                      .     .++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+
T Consensus       387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  465 (768)
T 3rgz_A          387 NLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV  465 (768)
T ss_dssp             TTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             hhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            3     3468888888888887777666 478889999999999888888888889999999999999888888888889


Q ss_pred             CCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEE
Q 037822          308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILR  387 (497)
Q Consensus       308 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  387 (497)
                      ++|++|++++|++++..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|+
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~  544 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLD  544 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEE
T ss_pred             CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEE
Confidence            99999999999998888888999999999999999998888889999999999999999998888887776 89999999


Q ss_pred             ccCcccccCCCcc-------------------------------------------------------------------
Q 037822          388 LRSNYFNGTIPPE-------------------------------------------------------------------  400 (497)
Q Consensus       388 l~~n~~~~~~~~~-------------------------------------------------------------------  400 (497)
                      +++|++++.+|..                                                                   
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            9999888666543                                                                   


Q ss_pred             ---cCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccC
Q 037822          401 ---LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM  477 (497)
Q Consensus       401 ---l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  477 (497)
                         +..+++|+.|++++|++++.+|.++++++.|+.|++++|.+..        ..+..++.+++|++|||++|.+++.+
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--------~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--------SIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC--------CCChHHhCCCCCCEEECCCCcccCcC
Confidence               3345778999999999999999999999999999999999854        44556788999999999999999999


Q ss_pred             ChhhhccCCCCeEECCCCCC
Q 037822          478 PVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       478 ~~~l~~l~~L~~l~l~~n~i  497 (497)
                      |..+..+++|++|++++|++
T Consensus       697 p~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          697 PQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             CGGGGGCCCCSEEECCSSEE
T ss_pred             ChHHhCCCCCCEEECcCCcc
Confidence            99999999999999999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.1e-55  Score=460.58  Aligned_cols=422  Identities=30%  Similarity=0.392  Sum_probs=260.9

Q ss_pred             CCccccCCCCCCCCCCccEEEcCCCCCcccCCc--cccCCCCCCEEECCCCcccccCCccc-cCCCCCCEEECcCCcCcc
Q 037822            3 VSDFIDGLSECTNSSLLEKLELGFNQLNGDLPS--SLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNG   79 (497)
Q Consensus         3 ~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~~~~   79 (497)
                      +|+.+++++      +|++|++++|.+++.+|.  .++.+++|++|++++|.+.+..|..+ .++++|++|++++|.+++
T Consensus        92 l~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  165 (768)
T 3rgz_A           92 SVSGFKCSA------SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG  165 (768)
T ss_dssp             CCCCCCCCT------TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE
T ss_pred             CchhhccCC------CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC
Confidence            346666666      999999999999887777  89999999999999998887777665 788899999999998887


Q ss_pred             cCCcc---CCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC
Q 037822           80 KFPEN---FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP  156 (497)
Q Consensus        80 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  156 (497)
                      ..+..   +.++++|++|++++|.+.+..+   +..+++|++|++++|.+.    ..++. +..+++|++|++++|.+..
T Consensus       166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~----~~~~~-l~~l~~L~~L~Ls~n~l~~  237 (768)
T 3rgz_A          166 ANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS----TGIPF-LGDCSALQHLDISGNKLSG  237 (768)
T ss_dssp             ETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCC----SCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred             cCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCC----CCCcc-cccCCCCCEEECcCCcCCC
Confidence            66655   6777788888888777765432   366777777777775332    22222 6666677777777776666


Q ss_pred             CCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCcccc--ccCCCEEEccCCccccCCCCC-
Q 037822          157 KFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG--FRFPATVDLSSNSFEGPLPLW-  233 (497)
Q Consensus       157 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~-  233 (497)
                      ..|..++.+++|+.|++++|.+.+..|..  . .++|++|++++|.+.+.+|..+.  ++.++.+++++|.+.+..|.. 
T Consensus       238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~-l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  314 (768)
T 3rgz_A          238 DFSRAISTCTELKLLNISSNQFVGPIPPL--P-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF  314 (768)
T ss_dssp             CHHHHTTTCSSCCEEECCSSCCEESCCCC--C-CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred             cccHHHhcCCCCCEEECCCCcccCccCcc--c-cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence            66666666666666666666665444432  1 13455555555554444443331  244444444444444433332 


Q ss_pred             --ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecc-------------------------cccccC--cC
Q 037822          234 --SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV-------------------------SKSICN--LQ  284 (497)
Q Consensus       234 --~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-------------------------~~~l~~--l~  284 (497)
                        +++|++|++++|.+.+.+|...+..+++|++|++++|.+.+..                         +..+..  ++
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  394 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN  394 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred             hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence              1244444444444443444332233444444444444333333                         333322  34


Q ss_pred             CccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecC
Q 037822          285 QLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG  364 (497)
Q Consensus       285 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  364 (497)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            45555555555555555556666666666666666665566666666666666666666665566666666666666666


Q ss_pred             CCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccc
Q 037822          365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYE  442 (497)
Q Consensus       365 ~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~  442 (497)
                      +|.+.+.+|..+.. +++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|..+.++++|+.|++++|++.
T Consensus       475 ~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          475 FNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             SSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            66666556655544 666666666666666666666666666666666666666666666666666666666666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5e-51  Score=419.59  Aligned_cols=464  Identities=21%  Similarity=0.186  Sum_probs=375.8

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|++++|.+++..+.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...|..|.++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            79999999999998889999999999999999999998889999999999999999999998889999999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCcc--EEEeec
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELT--TLVLNN  175 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~--~L~l~~  175 (497)
                      +|.+++..+. .+.++++|++|++++|.+.    ......+..+++|++|++++|.+....+..++.+++|+  .|++++
T Consensus       114 ~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          114 QTGISSIDFI-PLHNQKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             TSCCSCGGGS-CCTTCTTCCEEECCSSCCC----CCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred             ccCcccCCcc-hhccCCcccEEECCCCccc----ccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence            9999874333 6899999999999996543    21223344588999999999999887788899999999  899999


Q ss_pred             cccccccCchhhhc--------------------------------------------------ccCccEEEcccccccc
Q 037822          176 VRISDTIPDWFWQL--------------------------------------------------DLTLDELDVAYNELSG  205 (497)
Q Consensus       176 ~~~~~~~~~~~~~~--------------------------------------------------~~~L~~L~l~~~~~~~  205 (497)
                      |.+.+..+..+...                                                  ..+++++++++|.+.+
T Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            99887665544321                                                  0156677777777776


Q ss_pred             cCCccc-cccCCCEEEccCCccccCCCC--CccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecc-ccccc
Q 037822          206 SIPNSL-GFRFPATVDLSSNSFEGPLPL--WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV-SKSIC  281 (497)
Q Consensus       206 ~~~~~~-~~~~l~~l~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~  281 (497)
                      ..+..+ .++.++.+++++|.+....+.  ..++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.. +..+.
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchhhhh
Confidence            555544 467888888888888744332  24588888888888874444343 57888889999888876443 34578


Q ss_pred             CcCCccEEEeecceeeccc--CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCc-ccccCCCC
Q 037822          282 NLQQLLTLVISNNNLSGEI--PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP-SLKNCSMM  358 (497)
Q Consensus       282 ~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L  358 (497)
                      .+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            8888999999988887544  66788888999999999988877788888889999999999988765543 47888999


Q ss_pred             CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC---CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccC
Q 037822          359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT---IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP  435 (497)
Q Consensus       359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  435 (497)
                      ++|++++|.+.+..+..+.. +++|+.|++++|++++.   .+..+..+++|++|++++|++++..|..+.++++|+.|+
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  506 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD  506 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEECCCCccCCcCHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence            99999999888555555544 88999999999988752   235678889999999999999888888899999999999


Q ss_pred             CCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          436 PDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       436 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      +++|++...        .+..+..++.| .|++++|.+++.+|..+..+++|++|++++|++
T Consensus       507 Ls~N~l~~~--------~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          507 LSHNRLTSS--------SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             CCSSCCCGG--------GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             CCCCccCcC--------ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            999987543        34456778888 999999999988888899999999999999984

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1e-48  Score=407.71  Aligned_cols=474  Identities=20%  Similarity=0.201  Sum_probs=271.5

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|++++|.+++..+.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            67778888887776666677777888888888777776677777777788888887777775544567777788888887


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCcccc--CCCCccEEEeec
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLR--NQTELTTLVLNN  175 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~--~l~~L~~L~l~~  175 (497)
                      +|.+++..+ ..+.++++|++|++++|.+.    ...+..+..+++|++|++++|.+....+..+.  .+++|+.|++++
T Consensus       106 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          106 SNSIQKIKN-NPFVKQKNLITLDLSHNGLS----STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             SSCCCCCCS-CTTTTCTTCCEEECCSSCCS----CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             CCccCccCh-hHccccCCCCEEECCCCccc----ccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            777765333 36777777777777775432    23444556667777777777776655554443  346677777777


Q ss_pred             cccccccCchhhhcc--------------------------cCccEEEcccccccccCCcccc-c--cCCCEEEccCCcc
Q 037822          176 VRISDTIPDWFWQLD--------------------------LTLDELDVAYNELSGSIPNSLG-F--RFPATVDLSSNSF  226 (497)
Q Consensus       176 ~~~~~~~~~~~~~~~--------------------------~~L~~L~l~~~~~~~~~~~~~~-~--~~l~~l~l~~~~~  226 (497)
                      |.+.+..+..+....                          ++++.|++++|.+.+..+..+. +  +.++.+++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            766655554433221                          2455555555555544444332 2  2366666666655


Q ss_pred             ccCCCCC---ccccceEecccCcccccCChhh--------------------------------hcCCCCccEEEcccCc
Q 037822          227 EGPLPLW---SFNVTKLYLRDNSFSGPIPRDF--------------------------------GQKIPFLTDLDISFNS  271 (497)
Q Consensus       227 ~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~--------------------------------~~~~~~L~~L~l~~~~  271 (497)
                      .+..+..   .++|+.|++++|.+.+..+..+                                +..+++|++|++++|.
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            5444332   3355566666655543333222                                2234555555555555


Q ss_pred             ceecccccccCcCCccEEEeecceeec--ccCccccc--CCCCCEEECccCcccccCCcccccccCCcEEEeecceeeee
Q 037822          272 LNGSVSKSICNLQQLLTLVISNNNLSG--EIPRLWSN--ISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE  347 (497)
Q Consensus       272 i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~  347 (497)
                      +.+..+..+..+++|++|++++|.+..  .....+..  .++|+.|++++|++.+..+.++..+++|++|++++|.+.+.
T Consensus       341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  420 (680)
T 1ziw_A          341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE  420 (680)
T ss_dssp             BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred             cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence            555555555555555555555543210  01111111  12444444455555544455555666666666666666544


Q ss_pred             CC-cccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc--cCCCcccCCCCCCCEEEccCCcCcCCCCcc
Q 037822          348 VP-PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN--GTIPPELCKLPALHILDLSHNNLSGIIPPC  424 (497)
Q Consensus       348 ~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  424 (497)
                      .+ ..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.  +..|..+..+++|+.|++++|++++..+..
T Consensus       421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~  499 (680)
T 1ziw_A          421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM  499 (680)
T ss_dssp             CCSGGGTTCTTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCcccccCcccccEEecCCCCcceeChhhh-hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence            33 455556666666666666553222222 23555555555555544  234555666666666666666666555556


Q ss_pred             ccCCCCCcccCCCCCcccccceeeee------------------------CccccccccccccCEEEccCCcccccCChh
Q 037822          425 VGNFSGMKVEPPDSVKYEGSLQVVLK------------------------GSEYVFYTTLYLVNLMDLSSNNLSGEMPVE  480 (497)
Q Consensus       425 l~~l~~L~~L~l~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  480 (497)
                      +.++++|+.|++++|++.........                        ......+..+++|+.|++++|.+++..+..
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  579 (680)
T 1ziw_A          500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV  579 (680)
T ss_dssp             TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence            66666666666666665432211111                        111223455666666666666666555555


Q ss_pred             hhccCCCCeEECCCCCC
Q 037822          481 LTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       481 l~~l~~L~~l~l~~n~i  497 (497)
                      |..+++|++|++++|+|
T Consensus       580 ~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             TTTCTTCCEEECTTSCC
T ss_pred             hCCCCCCCEEECCCCcC
Confidence            56666666666666653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-49  Score=404.05  Aligned_cols=460  Identities=19%  Similarity=0.170  Sum_probs=319.8

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .-+.++.++..++ .+|..+.  .++++|++++|.+++..|.+|.++++|++|++++|.++...|.+|.++++|++|+++
T Consensus        13 ~~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           13 VNKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence            4567999999888 5666665  489999999999998889999999999999999999998889999999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+.+..+. .+.++++|++|++++|.+.    ...+..+..+++|++|++++|++.......+..+++|+.|++++|.
T Consensus        90 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A           90 ANPLIFMAET-ALSGPKALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             TCCCSEECTT-TTSSCTTCCEEECTTSCCS----CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred             CCcccccChh-hhcccccccEeeccccCcc----cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence            9999875555 8999999999999997543    2224567888999999999999987554455569999999999999


Q ss_pred             cccccCchhhhcccCcc--EEEcccccccccCCccccccCCCE-------------------------------------
Q 037822          178 ISDTIPDWFWQLDLTLD--ELDVAYNELSGSIPNSLGFRFPAT-------------------------------------  218 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~l~~-------------------------------------  218 (497)
                      +.+..+..+..+ ++++  .+++++|.+.+..+..+....++.                                     
T Consensus       165 l~~~~~~~~~~l-~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i  243 (606)
T 3t6q_A          165 IHYLSKEDMSSL-QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI  243 (606)
T ss_dssp             CCEECHHHHHTT-TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred             ccccChhhhhhh-cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence            987777777766 5888  899999999887776665544444                                     


Q ss_pred             ---------------EEccCCccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccc
Q 037822          219 ---------------VDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI  280 (497)
Q Consensus       219 ---------------l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l  280 (497)
                                     +++++|.+.+..+..   +++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..+..+
T Consensus       244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~  321 (606)
T 3t6q_A          244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISA  321 (606)
T ss_dssp             CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCG
T ss_pred             ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhh
Confidence                           444444444443322   235666666666655 444443 345666666666666655555556


Q ss_pred             cCcCCccEEEeecceeecccC-cccccCCCCCEEECccCcccccC--CcccccccCCcEEEeecceeeeeCCcccccCCC
Q 037822          281 CNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEI--PESIGSLLSVRFLILCNNHISGEVPPSLKNCSM  357 (497)
Q Consensus       281 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  357 (497)
                      ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ  401 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred             hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence            666666666666665543333 23556666666666666665443  445566666666666666666555666666666


Q ss_pred             CCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC---CCccccCCCCCccc
Q 037822          358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI---IPPCVGNFSGMKVE  434 (497)
Q Consensus       358 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~---~~~~l~~l~~L~~L  434 (497)
                      |+.|++++|.+.+..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.   .+..+..+++|+.|
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L  481 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL  481 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred             CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence            666666666665444443333466666666666666655555666666666666666666542   22446666666666


Q ss_pred             CCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          435 PPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       435 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      ++++|.+..        ..+..+..+++|+.|++++|.+++..|..+..++.| +|++++|+|
T Consensus       482 ~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          482 VLSFCDLSS--------IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             ECTTSCCCE--------ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             ECCCCccCc--------cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence            666666532        223345666777777777777776677777777777 777777764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-49  Score=408.14  Aligned_cols=457  Identities=19%  Similarity=0.164  Sum_probs=373.5

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|++++|.+++..+.+|+++++|++|++++|.+.+..|.+|.++++|++|++++|.++...|..|.++++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            79999999999988888889999999999999999987788889999999999999999987778889999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCcc----EEEe
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELT----TLVL  173 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~----~L~l  173 (497)
                      +|.+++..+. .+.++++|++|++++|.+.   ...++..+..+++|++|++++|++....+..++.+++|+    .+++
T Consensus       113 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~---~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          113 ETKLASLESF-PIGQLITLKKLNVAHNFIH---SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             TSCCCCSSSS-CCTTCTTCCEEECCSSCCC---CCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             CCcccccccc-ccCCCCCCCEEeCCCCccc---ceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            9998764434 6888999999999886432   124677788888999999999988877676666655544    7888


Q ss_pred             eccccccccCchhhhcccCccEEEccccccc-------------------------------------------------
Q 037822          174 NNVRISDTIPDWFWQLDLTLDELDVAYNELS-------------------------------------------------  204 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------------------------------  204 (497)
                      ++|.+.+..+..+.. . +|+++++++|.+.                                                 
T Consensus       189 ~~n~l~~~~~~~~~~-~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  266 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQG-I-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF  266 (606)
T ss_dssp             TTCCCCEECTTTTTT-C-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred             cCCCcceeCcccccC-c-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence            888877554444432 2 6777777776543                                                 


Q ss_pred             ---------ccCCccccccCCCEEEccCCccccCCC-CCccccceEecccCcccccCChhhhcCCCCccEEEcccCccee
Q 037822          205 ---------GSIPNSLGFRFPATVDLSSNSFEGPLP-LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG  274 (497)
Q Consensus       205 ---------~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  274 (497)
                               +..+....++.++.++++++.+..... ...++|+.+++++|.+ +.+| .+  .++.|++|++++|...+
T Consensus       267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~--~l~~L~~L~l~~n~~~~  342 (606)
T 3vq2_A          267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL--DLPFLKSLTLTMNKGSI  342 (606)
T ss_dssp             EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC--CCSSCCEEEEESCSSCE
T ss_pred             eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC--CCCccceeeccCCcCcc
Confidence                     222333346788888888888765441 1244899999999998 4777 33  78999999999996543


Q ss_pred             cccccccCcCCccEEEeecceeecc--cCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCC-cc
Q 037822          275 SVSKSICNLQQLLTLVISNNNLSGE--IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP-PS  351 (497)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~  351 (497)
                      ..  .+..+++|++|++++|.+.+.  .+..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..
T Consensus       343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence            33  567899999999999998854  37788899999999999999984 55788999999999999999987666 67


Q ss_pred             cccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc-CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCC
Q 037822          352 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSG  430 (497)
Q Consensus       352 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~  430 (497)
                      +..+++|++|++++|.+.+..+..+.. +++|+.|++++|++++ ..|..+..+++|++|++++|++++..|..+.++++
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR  498 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence            889999999999999999767766554 9999999999999987 36888999999999999999999888999999999


Q ss_pred             CcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccC-CCCeEECCCCCC
Q 037822          431 MKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLI-HLGTLNLSRNHL  497 (497)
Q Consensus       431 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~l~l~~n~i  497 (497)
                      |+.|++++|++...        .+..+..+++|++|++++|.++ .+|..+..++ +|++|++++|++
T Consensus       499 L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          499 LQLLNMSHNNLLFL--------DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CCEEECCSSCCSCE--------EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCEEECCCCcCCCc--------CHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence            99999999998543        3455788999999999999998 5666688987 699999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-48  Score=405.87  Aligned_cols=464  Identities=21%  Similarity=0.218  Sum_probs=317.1

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +|++|++++|.+++..|..|+.+++|++|++++|.+....+.+|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  129 (680)
T 1ziw_A           50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS  129 (680)
T ss_dssp             TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence            88899999888888888888888889999998888885555578888888888888888886666778888888888888


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCC--CCCCccccEEEccCCcCCCCCCccc-------------
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH--WIPPFKLTFINIRSCQLGPKFPTWL-------------  162 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~l-------------  162 (497)
                      +|.+++..+. .+.++++|++|++++|.+..    ..+..  ...+++|++|++++|++....+..+             
T Consensus       130 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          130 HNGLSSTKLG-TQVQLENLQELLLSNNKIQA----LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             SSCCSCCCCC-SSSCCTTCCEEECCSSCCCC----BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             CCcccccCch-hhcccccCCEEEccCCcccc----cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            8888765444 67788888888888764331    11111  1233456666666665554444433             


Q ss_pred             --------------------------------------cCCC--CccEEEeeccccccccCchhhhcccCccEEEccccc
Q 037822          163 --------------------------------------RNQT--ELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNE  202 (497)
Q Consensus       163 --------------------------------------~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  202 (497)
                                                            ..++  +|+.|++++|.+.+..+..+..+ ++|++|++++|.
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~  283 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNN  283 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCC
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCc
Confidence                                                  3332  25555555554444444434333 345555555555


Q ss_pred             ccccCCccc-cccCCCEEEccCCccccC------------CCCCccccceEecccCcccccCChhhhcCCCCccEEE---
Q 037822          203 LSGSIPNSL-GFRFPATVDLSSNSFEGP------------LPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLD---  266 (497)
Q Consensus       203 ~~~~~~~~~-~~~~l~~l~l~~~~~~~~------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~---  266 (497)
                      +.+..+..+ .++.++.++++++...+.            ....+++|+.+++++|.+.+..+. .+..+++|++|+   
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~  362 (680)
T 1ziw_A          284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSN  362 (680)
T ss_dssp             BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTT
T ss_pred             cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCC
Confidence            444333222 233333333333221110            001234666666666666643332 223445555555   


Q ss_pred             -------------------------cccCcceecccccccCcCCccEEEeecceeecccC-cccccCCCCCEEECccCcc
Q 037822          267 -------------------------ISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSL  320 (497)
Q Consensus       267 -------------------------l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i  320 (497)
                                               +++|.+.+..+.++..+++|++|++++|.+.+..+ ..+..+++|++|++++|++
T Consensus       363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  442 (680)
T 1ziw_A          363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY  442 (680)
T ss_dssp             CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred             CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence                                     45555555556667777777777777777764444 5667777777777777777


Q ss_pred             cccCCcccccccCCcEEEeecceee--eeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC-
Q 037822          321 SGEIPESIGSLLSVRFLILCNNHIS--GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI-  397 (497)
Q Consensus       321 ~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-  397 (497)
                      .+..+..+..+++|++|++++|.+.  +..|..+..+++|+.|++++|.+. .++...+.++++|+.|++++|++++.. 
T Consensus       443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~  521 (680)
T 1ziw_A          443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWK  521 (680)
T ss_dssp             EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred             ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccch
Confidence            7666667777777888888777765  346777888999999999999988 555554555899999999999887531 


Q ss_pred             -------CcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccC
Q 037822          398 -------PPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSS  470 (497)
Q Consensus       398 -------~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  470 (497)
                             +..+..+++|++|++++|++....+..|.++++|+.|++++|++..        ..+..+..+++|+.|++++
T Consensus       522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT--------LPASVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECTT
T ss_pred             hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc--------CCHhHhCCCCCCCEEECCC
Confidence                   1237888999999999999996666679999999999999998853        3344567899999999999


Q ss_pred             CcccccCChhhh-ccCCCCeEECCCCCC
Q 037822          471 NNLSGEMPVELT-RLIHLGTLNLSRNHL  497 (497)
Q Consensus       471 n~~~~~~~~~l~-~l~~L~~l~l~~n~i  497 (497)
                      |.+++..+..+. .+++|+++++++||+
T Consensus       594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          594 NLITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             SCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             CcCCccChhHhcccccccCEEEccCCCc
Confidence            999988888787 799999999999985

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.4e-47  Score=393.96  Aligned_cols=455  Identities=19%  Similarity=0.115  Sum_probs=378.6

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .-++++.+++.++ .+|..+.  +++++|++++|.+.+..+.+|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus        12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            4578999999998 5565554  899999999999998888899999999999999999998888899999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC-CCCccccCCCCccEEEeecc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTWLRNQTELTTLVLNNV  176 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~  176 (497)
                      +|.+++..+. .|.++++|++|++++|.+.    ...+..+..+++|++|++++|.+.. .+|..++.+++|++|++++|
T Consensus        89 ~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           89 GNPIQSFSPG-SFSGLTSLENLVAVETKLA----SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             TCCCCCCCTT-SSTTCTTCCEEECTTSCCC----CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CCcccccChh-hcCCcccCCEEEccCCccc----cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            9999885555 8999999999999996432    2233568889999999999999976 56899999999999999999


Q ss_pred             ccccccCchhhhcc---cCccEEEcccccccccCCccccccCCCEEEccCCcccc-------------------------
Q 037822          177 RISDTIPDWFWQLD---LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG-------------------------  228 (497)
Q Consensus       177 ~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------------------------  228 (497)
                      .+.+..+..+..+.   ..+.++++++|.+.+..+..+....++.+++++|.+.+                         
T Consensus       164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            99887777666542   12458999999999887777777788999998886531                         


Q ss_pred             ---------------------------------CCC--CCccccceEecccCcccccCChhhhcCCCCccEEEcccCcce
Q 037822          229 ---------------------------------PLP--LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN  273 (497)
Q Consensus       229 ---------------------------------~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  273 (497)
                                                       ..+  ...++++.++++++.+. .++  ....+++|++|++++|.+.
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~  320 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK  320 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc
Confidence                                             011  12347778888888775 455  2356788888888888884


Q ss_pred             ecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccC--CcccccccCCcEEEeecceeeeeCCcc
Q 037822          274 GSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEI--PESIGSLLSVRFLILCNNHISGEVPPS  351 (497)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~  351 (497)
                       ..| .+ .+++|++|++++|......  .+..+++|++|++++|.+++..  +..+..+++|++|++++|.+. ..+..
T Consensus       321 -~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~  394 (606)
T 3vq2_A          321 -QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN  394 (606)
T ss_dssp             -SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCC
T ss_pred             -ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhh
Confidence             555 44 7888999999888544333  5678899999999999988653  677888999999999999988 45678


Q ss_pred             cccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC-CCCccccCCCC
Q 037822          352 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG-IIPPCVGNFSG  430 (497)
Q Consensus       352 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~  430 (497)
                      +..+++|+.|++++|.+.+..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+ ..|..+..+++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            89999999999999999866663444559999999999999998888889999999999999999987 47889999999


Q ss_pred             CcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          431 MKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       431 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      |+.|++++|++..        ..+..+..+++|++|++++|.+++.+|..|..+++|++|+|++|+|
T Consensus       475 L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          475 LTFLDLSKCQLEQ--------ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             CCEEECCCCcCCc--------cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            9999999998853        3344568899999999999999988899999999999999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=382.26  Aligned_cols=457  Identities=18%  Similarity=0.178  Sum_probs=363.9

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|++++|.+++..+.+|..+++|++|++++|.+.+..+.+|.++++|++|++++|.++...+.+|.++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            78999999999988888889999999999999999887778889999999999999999987777889999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc----cEEEe
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL----TTLVL  173 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L----~~L~l  173 (497)
                      +|.+++. +...+.++++|++|++++|.+.   ...++..+..+++|++|++++|++....+..++.+++|    +.+++
T Consensus       109 ~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~---~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          109 ETNLASL-ENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             TSCCCCS-TTCSCTTCTTCCEEECCSSCCC---CCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccC-CCccccccccccEEecCCCccc---eecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            9998764 3335888999999999886432   12356778888899999999998887777778877777    78999


Q ss_pred             eccccccccCchhhhcccCccEEEcccccccccC-Cc------------------------------cc-ccc--CCCEE
Q 037822          174 NNVRISDTIPDWFWQLDLTLDELDVAYNELSGSI-PN------------------------------SL-GFR--FPATV  219 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~------------------------------~~-~~~--~l~~l  219 (497)
                      ++|.+.+..+..+...  +|+++++++|...... +.                              .+ .+.  .++.+
T Consensus       185 ~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             TTCCCCEECTTTTTTC--EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             CCCCceecCHHHhccC--cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence            9998887777666543  6888888877322100 00                              00 011  12344


Q ss_pred             EccCC-ccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecce
Q 037822          220 DLSSN-SFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN  295 (497)
Q Consensus       220 ~l~~~-~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~  295 (497)
                      ++.++ .+.+..+..   +++++.+++++|.+. .+|..+. .+ .|++|++++|.+. ..|.  ..+++|++|++++|.
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~-~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-NF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-CC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-cC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence            44444 344444433   458899999999887 5666553 45 8999999999987 3333  467899999999998


Q ss_pred             eecccCcccccCCCCCEEECccCcccccC--CcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCC
Q 037822          296 LSGEIPRLWSNISSLYILDMSNNSLSGEI--PESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP  373 (497)
Q Consensus       296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~  373 (497)
                      +....+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+
T Consensus       337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~  413 (570)
T 2z63_A          337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSE  413 (570)
T ss_dssp             SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTT
T ss_pred             ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccc
Confidence            7754443  67899999999999988554  5678889999999999999985444 48899999999999999986656


Q ss_pred             hhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc-CCCCccccCCCCCcccCCCCCcccccceeeeeCc
Q 037822          374 AWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS-GIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS  452 (497)
Q Consensus       374 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  452 (497)
                      ...+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. +.+|..+..+++|+.|++++|++..        .
T Consensus       414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~--------~  485 (570)
T 2z63_A          414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--------L  485 (570)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE--------E
T ss_pred             hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc--------C
Confidence            445556999999999999999888888999999999999999997 5688899999999999999998743        3


Q ss_pred             cccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          453 EYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       453 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      .+..+..+++|++|++++|.+++.++..|..+++|++|++++|++
T Consensus       486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            344567899999999999999988888899999999999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=391.27  Aligned_cols=463  Identities=21%  Similarity=0.175  Sum_probs=295.3

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEE
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVG-SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLD   95 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   95 (497)
                      +++++|++++|.+++..+.+|..+++|++|++++|.... +.|.+|.++++|++|++++|.++...|.+|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            489999999999998889999999999999999995443 4488899999999999999999988899999999999999


Q ss_pred             cCCCccccccCh-hhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCC--CCccEEE
Q 037822           96 LSENQWEGIITE-THFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQ--TELTTLV  172 (497)
Q Consensus        96 l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l--~~L~~L~  172 (497)
                      +++|.+.+..+. ..+.++++|+.|++++|.+.   ....+..+..+++|++|++++|.+....+..+..+  ++|+.|+
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~---~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR---SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC---CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCccc---ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            999999874443 35899999999999997543   11223567889999999999999988888888877  8999999


Q ss_pred             eeccccccccCchhhhcc-----cCccEEEcccccccccCCcccc----ccCCCEEEccCCccccC---------C----
Q 037822          173 LNNVRISDTIPDWFWQLD-----LTLDELDVAYNELSGSIPNSLG----FRFPATVDLSSNSFEGP---------L----  230 (497)
Q Consensus       173 l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~----~~~l~~l~l~~~~~~~~---------~----  230 (497)
                      +++|.+.+..+..+....     ..|+.|++++|.+.+..+..+.    ...+..+.+..+.....         .    
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence            999998877666544331     1489999999987765554332    23445555542221110         0    


Q ss_pred             -CCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCC
Q 037822          231 -PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS  309 (497)
Q Consensus       231 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  309 (497)
                       ....++++.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred             hccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence             001235666777776666333332 345666777777777766666666666677777777777666555666666677


Q ss_pred             CCEEECccCcccccCCcccccccCCcEEEeecceeeee------------------CCcccccCCCCCEEecCCCcCccc
Q 037822          310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE------------------VPPSLKNCSMMDSLDLGDNQLSGN  371 (497)
Q Consensus       310 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~~~L~~L~l~~~~i~~~  371 (497)
                      |+.|++++|.+....+..+..+++|++|++++|.+++.                  +|..   ..+++.|++++|.+.+.
T Consensus       340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL  416 (844)
T ss_dssp             CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS
T ss_pred             CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---ccccceeecccCccccC
Confidence            77777777766655555666666677776666665421                  1110   12333333444433321


Q ss_pred             CChhHhhhCCCCCEEEccCcccccCCCc-ccCCCCCCCEEEccCCcCc-----CCCCccccCCCCCcccCCCCCcccccc
Q 037822          372 IPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLPALHILDLSHNNLS-----GIIPPCVGNFSGMKVEPPDSVKYEGSL  445 (497)
Q Consensus       372 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~i~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~  445 (497)
                      -.......+++|+.|++++|++++..+. .+..+++|+.|++++|.+.     +..+..+.++++|+.|++++|.+... 
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-  495 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-  495 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC-
T ss_pred             chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc-
Confidence            1111122355666666666665532211 2334455555555555554     22233455555555555555554322 


Q ss_pred             eeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCC
Q 037822          446 QVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       446 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~  496 (497)
                             .+..+..+++|++|+|++|.+++..+..+.  ++|+.|++++|+
T Consensus       496 -------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          496 -------PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             -------CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred             -------ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence                   222234455555555555555544433333  444444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-45  Score=374.78  Aligned_cols=441  Identities=20%  Similarity=0.188  Sum_probs=342.0

Q ss_pred             CCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEE
Q 037822           15 NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL   94 (497)
Q Consensus        15 ~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   94 (497)
                      .+++|++|++++|++++..+.+|+.+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..++++++|++|
T Consensus        50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred             CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence            34499999999999998888899999999999999999998888999999999999999999996666679999999999


Q ss_pred             EcCCCccccc-cChhhhhcCCCCceEeccCccccceeeecccCCCCCCccc----cEEEccCCcCCCCCCccccCCCCcc
Q 037822           95 DLSENQWEGI-ITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKL----TFINIRSCQLGPKFPTWLRNQTELT  169 (497)
Q Consensus        95 ~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L----~~l~l~~~~~~~~~~~~l~~l~~L~  169 (497)
                      ++++|.+++. +|. .+.++++|+.|++++|.+.    ...+..+..+.+|    +++++++|.+....+..+... +|+
T Consensus       130 ~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~  203 (570)
T 2z63_A          130 NVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH  203 (570)
T ss_dssp             ECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC----EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred             ecCCCccceecChh-hhcccCCCCEEeCcCCccc----eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence            9999999863 455 7999999999999997543    2334556666677    899999999987777777665 899


Q ss_pred             EEEeeccccccc-cC------------------------------chhhhcc-cCccEEEcccc-cccccCCccc-cccC
Q 037822          170 TLVLNNVRISDT-IP------------------------------DWFWQLD-LTLDELDVAYN-ELSGSIPNSL-GFRF  215 (497)
Q Consensus       170 ~L~l~~~~~~~~-~~------------------------------~~~~~~~-~~L~~L~l~~~-~~~~~~~~~~-~~~~  215 (497)
                      .|++++|..... .+                              ..+.... ..++.+++.++ .+.+..+..+ .++.
T Consensus       204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~  283 (570)
T 2z63_A          204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN  283 (570)
T ss_dssp             EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred             eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence            999988742210 00                              0111110 13455556555 4444555544 4678


Q ss_pred             CCEEEccCCccccCCCC--CccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeec
Q 037822          216 PATVDLSSNSFEGPLPL--WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN  293 (497)
Q Consensus       216 l~~l~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  293 (497)
                      ++.++++++.+......  .. +|+.+++++|.+. .+|.   ..+++|++|++++|.+....+.  ..+++|++|++++
T Consensus       284 L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~  356 (570)
T 2z63_A          284 VSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR  356 (570)
T ss_dssp             CSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred             ccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence            89999988887753322  12 8888999998887 5555   3678899999999887654443  6788899999998


Q ss_pred             ceeeccc--CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCC-cccccCCCCCEEecCCCcCcc
Q 037822          294 NNLSGEI--PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP-PSLKNCSMMDSLDLGDNQLSG  370 (497)
Q Consensus       294 n~~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~  370 (497)
                      |.+....  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus       357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            8877433  56677888999999999988754444 8888899999999998876544 467888999999999998886


Q ss_pred             cCChhHhhhCCCCCEEEccCcccc-cCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeee
Q 037822          371 NIPAWIGESMPSLSILRLRSNYFN-GTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVL  449 (497)
Q Consensus       371 ~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  449 (497)
                      ..+..+. .+++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..+.++++|+.|++++|++...     
T Consensus       436 ~~~~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----  509 (570)
T 2z63_A          436 AFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-----  509 (570)
T ss_dssp             CCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-----
T ss_pred             cchhhhh-cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC-----
Confidence            5555444 4889999999999887 46778888899999999999999888888889999999999999887433     


Q ss_pred             eCccccccccccccCEEEccCCcccccCC
Q 037822          450 KGSEYVFYTTLYLVNLMDLSSNNLSGEMP  478 (497)
Q Consensus       450 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  478 (497)
                         .+..+..+++|+.|++++|.++...|
T Consensus       510 ---~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          510 ---PDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ---CHHHhhcccCCcEEEecCCcccCCCc
Confidence               33456778899999999999886655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-45  Score=375.08  Aligned_cols=455  Identities=19%  Similarity=0.206  Sum_probs=361.1

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +|++|++++|.+++..+.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            89999999999998888899999999999999999998888899999999999999999997776779999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecc-cCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNI-SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV  176 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  176 (497)
                      +|.+++......+.++++|++|++++|.    ....+ +..+..+++|++|++++|.+....|..++.+++|+.|++++|
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVE----TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESS----SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCcccccchhhhhhccCCccEEECCCCc----cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            9998763222368899999999998863    12233 356788899999999999998888899999999999999998


Q ss_pred             ccccccCchhhhcccCccEEEcccccccccC----CccccccCCCEEEccCCccccCCC-------CCccccceEecccC
Q 037822          177 RISDTIPDWFWQLDLTLDELDVAYNELSGSI----PNSLGFRFPATVDLSSNSFEGPLP-------LWSFNVTKLYLRDN  245 (497)
Q Consensus       177 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~-------~~~~~L~~L~l~~~  245 (497)
                      .+. ..+..+....++|++|++++|.+.+..    +.....+.++.+++.++.+.+..+       ....+++.+++++|
T Consensus       183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             BST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             ccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            875 445555444568999999999988642    112236688999999988765332       22457888999998


Q ss_pred             cccccCC-----hhhhcCCCCccEEEcccCcceec-----ccccccCcCCccEEEeecceeecccCccc-ccCCCCCEEE
Q 037822          246 SFSGPIP-----RDFGQKIPFLTDLDISFNSLNGS-----VSKSICNLQQLLTLVISNNNLSGEIPRLW-SNISSLYILD  314 (497)
Q Consensus       246 ~~~~~~~-----~~~~~~~~~L~~L~l~~~~i~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~  314 (497)
                      .+.+...     ......+++++.+++.++.+...     .+..+...++|++|++++|.+. .+|..+ ..+++|++|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~  340 (549)
T 2z81_A          262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD  340 (549)
T ss_dssp             EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred             cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence            7764211     11224678899999988876532     1122334578999999999987 666655 5799999999


Q ss_pred             CccCcccccCC---cccccccCCcEEEeecceeeeeCC--cccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEcc
Q 037822          315 MSNNSLSGEIP---ESIGSLLSVRFLILCNNHISGEVP--PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR  389 (497)
Q Consensus       315 l~~n~i~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  389 (497)
                      +++|.+.+..+   ..++.+++|++|++++|.+++..+  ..+..+++|++|++++|++. .+|..+.. +++|+.|+++
T Consensus       341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-~~~L~~L~Ls  418 (549)
T 2z81_A          341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-PEKMRFLNLS  418 (549)
T ss_dssp             CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-CTTCCEEECT
T ss_pred             ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-cccccEEECC
Confidence            99999986553   346788999999999999874322  45788999999999999998 77776554 8899999999


Q ss_pred             CcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822          390 SNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS  469 (497)
Q Consensus       390 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  469 (497)
                      +|+++ .++..+  .++|++|++++|++++..    ..+++|+.|++++|++.. ++.         ...+++|++|+++
T Consensus       419 ~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~---------~~~l~~L~~L~Ls  481 (549)
T 2z81_A          419 STGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD---------ASLFPVLLVMKIS  481 (549)
T ss_dssp             TSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC---------GGGCTTCCEEECC
T ss_pred             CCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC---------cccCccCCEEecC
Confidence            99987 444433  368999999999998642    578899999999998862 222         2458899999999


Q ss_pred             CCcccccCChhhhccCCCCeEECCCCCC
Q 037822          470 SNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       470 ~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      +|.+++.+|+.|..+++|++|++++|++
T Consensus       482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             CCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            9999988888899999999999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=391.39  Aligned_cols=461  Identities=21%  Similarity=0.195  Sum_probs=332.4

Q ss_pred             CccccCCCCCCCCCCccEEEcCCCCCc-ccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCC
Q 037822            4 SDFIDGLSECTNSSLLEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFP   82 (497)
Q Consensus         4 ~~~l~~l~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~   82 (497)
                      |..+.+++      +|++|++++|... ...|.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+
T Consensus        41 ~~~~~~l~------~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~  114 (844)
T 3j0a_A           41 ASSFPFLE------QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL  114 (844)
T ss_dssp             SSSCSSCC------SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCS
T ss_pred             hhHCcccc------cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccc
Confidence            45555565      9999999999544 4448899999999999999999998889999999999999999999987556


Q ss_pred             cc--CCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCC--ccccEEEccCCcCCCCC
Q 037822           83 EN--FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPP--FKLTFINIRSCQLGPKF  158 (497)
Q Consensus        83 ~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~  158 (497)
                      ..  +.++++|++|++++|.+++..+...+.++++|++|++++|.+.    ...+..+..+  ++|+.|++++|.+....
T Consensus       115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~----~~~~~~l~~l~~~~L~~L~L~~n~l~~~~  190 (844)
T 3j0a_A          115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF----LVCEHELEPLQGKTLSFFSLAANSLYSRV  190 (844)
T ss_dssp             TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC----CCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred             cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC----eeCHHHcccccCCccceEECCCCcccccc
Confidence            54  8999999999999999987655557999999999999997543    2234444444  68999999999988877


Q ss_pred             CccccCCCC------ccEEEeeccccccccCchhhhcc-------------------------------------cCccE
Q 037822          159 PTWLRNQTE------LTTLVLNNVRISDTIPDWFWQLD-------------------------------------LTLDE  195 (497)
Q Consensus       159 ~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~~-------------------------------------~~L~~  195 (497)
                      +..++.+++      |+.|++++|.+.+..+..+....                                     ++++.
T Consensus       191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~  270 (844)
T 3j0a_A          191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH  270 (844)
T ss_dssp             CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred             ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence            777776665      99999999987766655544321                                     34555


Q ss_pred             EEcccccccccCCccc-cccCCCEEEccCCccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCc
Q 037822          196 LDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNS  271 (497)
Q Consensus       196 L~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  271 (497)
                      |++++|.+.+..+..+ .++.++.+++++|.+.+..+..   .++|+.|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus       271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~  349 (844)
T 3j0a_A          271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNH  349 (844)
T ss_dssp             EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCC
T ss_pred             EECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCC
Confidence            5555555554444433 3455555555555555444332   2355555555555553323222 345555666666555


Q ss_pred             ceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeC-Cc
Q 037822          272 LNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV-PP  350 (497)
Q Consensus       272 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~  350 (497)
                      +....+..+..+++|++|++++|.+.. +    ..+++|+.|++++|++. ..+..   ..+++.|++++|.+.+.. +.
T Consensus       350 i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~  420 (844)
T 3j0a_A          350 IAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILY  420 (844)
T ss_dssp             CCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHH
T ss_pred             CCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhh
Confidence            554444555555556666665555541 1    12455566666666555 22221   356788888888886432 12


Q ss_pred             ccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc-----CCCcccCCCCCCCEEEccCCcCcCCCCccc
Q 037822          351 SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-----TIPPELCKLPALHILDLSHNNLSGIIPPCV  425 (497)
Q Consensus       351 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l  425 (497)
                      .+..+++|+.|++++|.+.+..+......+++|+.|++++|.++.     ..+..|..+++|++|++++|.+++..|..+
T Consensus       421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  500 (844)
T 3j0a_A          421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF  500 (844)
T ss_dssp             HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred             hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc
Confidence            345899999999999999854444344448999999999999873     334568889999999999999999999999


Q ss_pred             cCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          426 GNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       426 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      ..+++|+.|++++|++....+..        +.  ++|+.|++++|.+++..|..|   ++|+.+++++|++
T Consensus       501 ~~l~~L~~L~Ls~N~l~~l~~~~--------~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~  559 (844)
T 3j0a_A          501 SHLTALRGLSLNSNRLTVLSHND--------LP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF  559 (844)
T ss_dssp             SSCCSCSEEEEESCCCSSCCCCC--------CC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred             cchhhhheeECCCCCCCccChhh--------hh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence            99999999999999986543332        22  789999999999998888764   5899999999984

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=364.93  Aligned_cols=448  Identities=19%  Similarity=0.129  Sum_probs=224.4

Q ss_pred             EEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCc
Q 037822           21 KLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQ  100 (497)
Q Consensus        21 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  100 (497)
                      +|++++|.++ .+|..+.  ++|++|++++|.+.+..|.+|.++++|++|++++|++++..|.+|.++++|++|++++|+
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            3455555544 2333333  455555555555444333445555555555555555544444445555555555555555


Q ss_pred             cccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc--cEEEeecccc
Q 037822          101 WEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL--TTLVLNNVRI  178 (497)
Q Consensus       101 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  178 (497)
                      +++ ++..   .+++|++|++++|.+.   ...++..+..+++|++|++++|++..   ..+..+++|  +.|++++|.+
T Consensus        81 l~~-lp~~---~l~~L~~L~L~~N~l~---~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 LVK-ISCH---PTVNLKHLDLSFNAFD---ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCE-EECC---CCCCCSEEECCSSCCS---SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             eee-cCcc---ccCCccEEeccCCccc---cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            443 2221   4455555555543221   01223344444455555555554432   233444444  5555555554


Q ss_pred             --ccccCchhhhcccCccEEEcccccccccCCccc--cccCCCEEEccCCc-------cccCCC--CCccccceEecccC
Q 037822          179 --SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL--GFRFPATVDLSSNS-------FEGPLP--LWSFNVTKLYLRDN  245 (497)
Q Consensus       179 --~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~l~~l~l~~~~-------~~~~~~--~~~~~L~~L~l~~~  245 (497)
                        .+..|..+..+..+...+++++|.+.+..+...  .++.++.+++++|.       +.+..+  ...++++.++++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc
Confidence              334444443322222233444444433222211  23344444444443       211111  11235555555555


Q ss_pred             cccccCChhhhc--CCCCccEEEcccCcceecccccc-----cCcCCccEEEeecceeecccC-cccccC---CCCCEEE
Q 037822          246 SFSGPIPRDFGQ--KIPFLTDLDISFNSLNGSVSKSI-----CNLQQLLTLVISNNNLSGEIP-RLWSNI---SSLYILD  314 (497)
Q Consensus       246 ~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~-~~~~~~---~~L~~L~  314 (497)
                      .+.+.....+..  ..+.|++|++++|.+.+..|..+     ..+++|+.+++++|.+  ..| ..+..+   .+|+.|+
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence            444322211110  13466666666666665555555     5566666666666665  233 222222   4566666


Q ss_pred             CccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcc--cCChhHhhhCCCCCEEEccCcc
Q 037822          315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG--NIPAWIGESMPSLSILRLRSNY  392 (497)
Q Consensus       315 l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~~L~~L~l~~n~  392 (497)
                      +++|.+....  ....+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+  .+|..+. .+++|+.|++++|.
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNS  385 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSC
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCc
Confidence            6666654221  12455666666666666665556666666666666666666653  2223233 36666666666666


Q ss_pred             cccCCCc-ccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCC
Q 037822          393 FNGTIPP-ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSN  471 (497)
Q Consensus       393 ~~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  471 (497)
                      +++.+|. .+..+++|++|++++|++++..|..+.  ++|+.|++++|++..         .+..+..+++|++|++++|
T Consensus       386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~---------ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS---------IPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC---------CCGGGGGCTTCCEEECCSS
T ss_pred             CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc---------cchhhhcCCCCCEEECCCC
Confidence            6643443 355666666666666666655554443  566666666666531         1222335677777777777


Q ss_pred             cccccCChhhhccCCCCeEECCCCCC
Q 037822          472 NLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       472 ~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      .+++..+..|..+++|++|++++|++
T Consensus       455 ~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          455 QLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCccCHHHhccCCcccEEECcCCCC
Confidence            77743333377777777777777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-43  Score=363.79  Aligned_cols=413  Identities=19%  Similarity=0.249  Sum_probs=288.1

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCccc------c---------------------------cCCcccc-
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFV------G---------------------------SIPPSIG-   62 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~------~---------------------------~~~~~l~-   62 (497)
                      .+++.|+++++.+.+.+|.+++.+++|++|++++|.+.      +                           ..|..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            48999999999999999999999999999999999651      0                           0000010 


Q ss_pred             ------------------CCCCCCEEECc--CCcCcccCCccCCCCCCCCEEEcCCCccccc-----------------c
Q 037822           63 ------------------NLTFLKELYLS--SNQMNGKFPENFGQLSAVEVLDLSENQWEGI-----------------I  105 (497)
Q Consensus        63 ------------------~l~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~  105 (497)
                                        ....++.+.+.  +|.+++ +|..++++++|++|++++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              11122222232  567776 788899999999999999998873                 4


Q ss_pred             Chhhhh--cCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc-ccc-c
Q 037822          106 TETHFR--NLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR-ISD-T  181 (497)
Q Consensus       106 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~  181 (497)
                      |. .+.  ++++|++|++++                            |.+...+|..++++++|+.|++++|. +++ .
T Consensus       240 p~-~l~~~~l~~L~~L~L~~----------------------------n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~  290 (636)
T 4eco_A          240 TE-DLKWDNLKDLTDVEVYN----------------------------CPNLTKLPTFLKALPEMQLINVACNRGISGEQ  290 (636)
T ss_dssp             TS-CCCGGGCTTCCEEEEEC----------------------------CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred             ch-hhhhcccCCCCEEEecC----------------------------CcCCccChHHHhcCCCCCEEECcCCCCCcccc
Confidence            44 455  677666666655                            44444555566666666666666665 555 4


Q ss_pred             cCchhhhc-----ccCccEEEcccccccccCCc---cccccCCCEEEccCCccccCCCC--CccccceEecccCcccccC
Q 037822          182 IPDWFWQL-----DLTLDELDVAYNELSGSIPN---SLGFRFPATVDLSSNSFEGPLPL--WSFNVTKLYLRDNSFSGPI  251 (497)
Q Consensus       182 ~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~---~~~~~~l~~l~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~  251 (497)
                      .|..+..+     .++|++|++++|.++ .+|.   ...++.|+.+++++|.+.+..|.  ..++|+.|++++|.+. .+
T Consensus       291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~l  368 (636)
T 4eco_A          291 LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EI  368 (636)
T ss_dssp             HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-EC
T ss_pred             chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cc
Confidence            55555443     135666666666666 4443   23455566666666666544441  1237777788888777 66


Q ss_pred             ChhhhcCCCC-ccEEEcccCcceecccccccCcC--CccEEEeecceeecccCcccc-------cCCCCCEEECccCccc
Q 037822          252 PRDFGQKIPF-LTDLDISFNSLNGSVSKSICNLQ--QLLTLVISNNNLSGEIPRLWS-------NISSLYILDMSNNSLS  321 (497)
Q Consensus       252 ~~~~~~~~~~-L~~L~l~~~~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~i~  321 (497)
                      |..+ ..++. |++|++++|.+. ..|..+..++  +|++|++++|.+.+..|..+.       .+++|+.|++++|.++
T Consensus       369 p~~l-~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~  446 (636)
T 4eco_A          369 PANF-CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS  446 (636)
T ss_dssp             CTTS-EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred             cHhh-hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence            6665 45777 888888888887 5666666544  788888888888877777776       6778888888888888


Q ss_pred             ccCCcccccccCCcEEEeecceeeeeCCcc-cccC-------CCCCEEecCCCcCcccCChhHh-hhCCCCCEEEccCcc
Q 037822          322 GEIPESIGSLLSVRFLILCNNHISGEVPPS-LKNC-------SMMDSLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNY  392 (497)
Q Consensus       322 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~-------~~L~~L~l~~~~i~~~~~~~~~-~~~~~L~~L~l~~n~  392 (497)
                      ...+..+..+++|++|++++|.++ .+|.. +...       ++|+.|++++|.+. .+|..++ ..+++|+.|++++|+
T Consensus       447 ~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  524 (636)
T 4eco_A          447 KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS  524 (636)
T ss_dssp             SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred             cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence            444445566888888888888887 44443 3322       28888888888888 7777665 348888888888888


Q ss_pred             cccCCCcccCCCCCCCEEEc------cCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEE
Q 037822          393 FNGTIPPELCKLPALHILDL------SHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLM  466 (497)
Q Consensus       393 ~~~~~~~~l~~l~~L~~L~l------~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  466 (497)
                      +++ +|..+..+++|++|++      ++|++.+.+|..+.++++|+.|++++|++ ..++..        +  .++|+.|
T Consensus       525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~--------~--~~~L~~L  592 (636)
T 4eco_A          525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK--------I--TPNISVL  592 (636)
T ss_dssp             CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC--------C--CTTCCEE
T ss_pred             CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh--------H--hCcCCEE
Confidence            885 7778888888888888      45677778888888888888888888887 333321        1  2678888


Q ss_pred             EccCCcccccC
Q 037822          467 DLSSNNLSGEM  477 (497)
Q Consensus       467 ~l~~n~~~~~~  477 (497)
                      ++++|++....
T Consensus       593 ~Ls~N~l~~~~  603 (636)
T 4eco_A          593 DIKDNPNISID  603 (636)
T ss_dssp             ECCSCTTCEEE
T ss_pred             ECcCCCCcccc
Confidence            88888776443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.5e-43  Score=355.01  Aligned_cols=445  Identities=18%  Similarity=0.130  Sum_probs=355.7

Q ss_pred             CccccCCCCCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcc-cCC
Q 037822            4 SDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNG-KFP   82 (497)
Q Consensus         4 ~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~   82 (497)
                      |..+.+++      +|++|++++|++++..+.+|+.+++|++|++++|.+.+..|..|.++++|++|++++|.++. ..+
T Consensus        43 ~~~~~~l~------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  116 (549)
T 2z81_A           43 HGDLRACA------NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT  116 (549)
T ss_dssp             SSTTSSCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS
T ss_pred             hhhhhcCC------cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh
Confidence            34455555      99999999999998888999999999999999999997777779999999999999999986 346


Q ss_pred             ccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccc
Q 037822           83 ENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWL  162 (497)
Q Consensus        83 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l  162 (497)
                      ..+.++++|++|++++|.+.+.++...+.++++|++|++++|.+    ....+..+..+++|++|+++++.+.......+
T Consensus       117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  192 (549)
T 2z81_A          117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL----RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA  192 (549)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC----CEECTTTTTTCSEEEEEEEECSBSTTHHHHHH
T ss_pred             hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc----cccChhhhhccccCceEecccCcccccchhhH
Confidence            78999999999999999844446655899999999999998643    34567888899999999999998754333334


Q ss_pred             cCCCCccEEEeecccccccc--CchhhhcccCccEEEcccccccccCCccc-----cccCCCEEEccCCccccCC-----
Q 037822          163 RNQTELTTLVLNNVRISDTI--PDWFWQLDLTLDELDVAYNELSGSIPNSL-----GFRFPATVDLSSNSFEGPL-----  230 (497)
Q Consensus       163 ~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~-----  230 (497)
                      ..+++|+.|++++|.+.+..  +..+....++++.+++++|.+.+..+..+     .++.++.+++++|.+.+..     
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  272 (549)
T 2z81_A          193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS  272 (549)
T ss_dssp             HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred             hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence            67899999999999987642  33333444689999999998876544332     3568999999999877642     


Q ss_pred             ----CCCccccceEecccCcccccCC----hhhhcCCCCccEEEcccCcceecccccc-cCcCCccEEEeecceeecccC
Q 037822          231 ----PLWSFNVTKLYLRDNSFSGPIP----RDFGQKIPFLTDLDISFNSLNGSVSKSI-CNLQQLLTLVISNNNLSGEIP  301 (497)
Q Consensus       231 ----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~  301 (497)
                          .....+++.+++.++.+.....    .......+.|++|++++|.+. ..|..+ ..+++|++|++++|.+.+..+
T Consensus       273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~  351 (549)
T 2z81_A          273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYL  351 (549)
T ss_dssp             TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred             chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccc
Confidence                2345688999998887652210    111234678999999999987 445444 579999999999999886553


Q ss_pred             ---cccccCCCCCEEECccCcccccCC--cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhH
Q 037822          302 ---RLWSNISSLYILDMSNNSLSGEIP--ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI  376 (497)
Q Consensus       302 ---~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  376 (497)
                         ..++.+++|++|++++|.+++..+  ..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .++..+
T Consensus       352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~  429 (549)
T 2z81_A          352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI  429 (549)
T ss_dssp             HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS
T ss_pred             cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh
Confidence               346788999999999999985432  45888999999999999998 67888889999999999999987 666543


Q ss_pred             hhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccc
Q 037822          377 GESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVF  456 (497)
Q Consensus       377 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  456 (497)
                         +++|+.|++++|++++.    +..+++|++|++++|+++ .+|. ...+++|+.|++++|++..        ..+..
T Consensus       430 ---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~--------~~~~~  492 (549)
T 2z81_A          430 ---PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS--------VPDGI  492 (549)
T ss_dssp             ---CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC--------CCTTG
T ss_pred             ---cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC--------cCHHH
Confidence               46899999999999853    357899999999999998 5665 5689999999999998853        34445


Q ss_pred             cccccccCEEEccCCcccccCC
Q 037822          457 YTTLYLVNLMDLSSNNLSGEMP  478 (497)
Q Consensus       457 ~~~~~~L~~L~l~~n~~~~~~~  478 (497)
                      +..+++|+.|++++|.++...|
T Consensus       493 ~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          493 FDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCcccCEEEecCCCccCCCc
Confidence            6789999999999999976554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.6e-41  Score=347.14  Aligned_cols=458  Identities=22%  Similarity=0.232  Sum_probs=349.0

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|++++|+|++..+.+|..+++|++|++++|.++++.+.+|.++++|++|++++|+++...+.+|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            78999999999998888889999999999999999987778889999999999999999987767788999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc----cEEEe
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL----TTLVL  173 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L----~~L~l  173 (497)
                      +|++++ ++...|+++++|++|++++|.+.   ....+..+..+++|++|++++|++....+..++.+.++    ..+++
T Consensus       133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             TSCCCC-STTCCCTTCTTCCEEECCSSCCC---CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             CCcCCC-CChhhhhcCcccCeeccccCccc---cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence            999987 44447899999999999986532   22355667778899999999998887777666554433    35667


Q ss_pred             eccccccccCchhhhcccCccEEEccccccc-------------------------------------------------
Q 037822          174 NNVRISDTIPDWFWQLDLTLDELDVAYNELS-------------------------------------------------  204 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------------------------------  204 (497)
                      +.|.+....+..+...  .++.+++.++...                                                 
T Consensus       209 s~n~l~~i~~~~~~~~--~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l  286 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  286 (635)
T ss_dssp             TTCCCCEECTTTTTTC--EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred             ccCcccccCcccccch--hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence            7766654333322211  2333333332110                                                 


Q ss_pred             ----------ccCCccccccCCCEEEccCCccccCCCC-CccccceEecccCcccccCChhhhcCCCCccEEEcccCcce
Q 037822          205 ----------GSIPNSLGFRFPATVDLSSNSFEGPLPL-WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN  273 (497)
Q Consensus       205 ----------~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  273 (497)
                                +..........+..+.+..+.+....+. ....++.+++.++.+.+ ++.   ..++.++.+++..+.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~---~~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT---LKLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCC---CBCTTCCEEEEESCCSC
T ss_pred             hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCc---ccchhhhhcccccccCC
Confidence                      0000111233556666666665544332 23488999999998763 322   25788999999998875


Q ss_pred             ecccccccCcCCccEEEeecceee--cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeC-Cc
Q 037822          274 GSVSKSICNLQQLLTLVISNNNLS--GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV-PP  350 (497)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~  350 (497)
                      .  +.....+++|+.+++++|.+.  +..+..+..+.+|+.+++..+.+. ..+..+..+++|+.+++.++...... ..
T Consensus       363 ~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~  439 (635)
T 4g8a_A          363 N--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS  439 (635)
T ss_dssp             C--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred             C--Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccc
Confidence            3  234557899999999998875  234555667889999999999887 45556788999999999988876443 34


Q ss_pred             ccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc-cCCCcccCCCCCCCEEEccCCcCcCCCCccccCCC
Q 037822          351 SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN-GTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFS  429 (497)
Q Consensus       351 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~  429 (497)
                      .+..+++++.++++.|.+.+..+ ..+..+++++.|++++|.+. ...|..|..+++|++|++++|++.+..|..|.+++
T Consensus       440 ~~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~  518 (635)
T 4g8a_A          440 VFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  518 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccccccccccccccccccccccc-cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence            67789999999999999984444 44455899999999999754 34677899999999999999999988899999999


Q ss_pred             CCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhcc-CCCCeEECCCCCC
Q 037822          430 GMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL-IHLGTLNLSRNHL  497 (497)
Q Consensus       430 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~l~l~~n~i  497 (497)
                      +|+.|++++|++..        ..+..+..+++|++||+++|.+++..|..|..+ ++|++|+|++||+
T Consensus       519 ~L~~L~Ls~N~l~~--------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          519 SLQVLNMSHNNFFS--------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             TCCEEECTTSCCCB--------CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CCCEEECCCCcCCC--------CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            99999999998844        334456789999999999999999999999988 6899999999985

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.7e-42  Score=357.44  Aligned_cols=406  Identities=16%  Similarity=0.199  Sum_probs=235.3

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEEC-CCCcccccCCccc----------------------------------
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLEL-WHNSFVGSIPPSI----------------------------------   61 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~l----------------------------------   61 (497)
                      .+++.|+++++.+.+.+|.+|+.+++|++|++ ++|.+.+..|..-                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            48999999999999999999999999999999 7776544311100                                  


Q ss_pred             -----------------cCCCCCCEEECcC--CcCcccCCccCCCCCCCCEEEcCCCcccc-----------------cc
Q 037822           62 -----------------GNLTFLKELYLSS--NQMNGKFPENFGQLSAVEVLDLSENQWEG-----------------II  105 (497)
Q Consensus        62 -----------------~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~  105 (497)
                                       .....++.+.+..  |.+++ +|..+.++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             0111122222221  33443 44445555555555555555544                 12


Q ss_pred             Chhhhh--cCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc-CCC-CCCccccCC-------CCccEEEee
Q 037822          106 TETHFR--NLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ-LGP-KFPTWLRNQ-------TELTTLVLN  174 (497)
Q Consensus       106 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~  174 (497)
                      |. .+.  ++++|+.|++++|.    ....++..+..+++|+.|++++|+ +.. .+|..++.+       ++|+.|+++
T Consensus       482 P~-~l~f~~L~~L~~L~Ls~N~----l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          482 NE-ELSWSNLKDLTDVELYNCP----NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             TS-CCCGGGCTTCCEEEEESCT----TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             Ch-hhhhccCCCCCEEECcCCC----CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence            32 222  45555555554431    223344444455555555555554 433 344333332       255555555


Q ss_pred             ccccccccCc--hhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCC---ccc-cceEecccCccc
Q 037822          175 NVRISDTIPD--WFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW---SFN-VTKLYLRDNSFS  248 (497)
Q Consensus       175 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---~~~-L~~L~l~~~~~~  248 (497)
                      +|.+. .+|.  .+..+ ++|+.|++++|.+. .+|....++.|+.|++++|.+. ..|..   .++ |+.|++++|.+.
T Consensus       557 ~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          557 YNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            55554 4444  44433 35555555555555 4443333445555555555555 22222   224 666666666665


Q ss_pred             ccCChhhhcCC--CCccEEEcccCcceeccccc---cc--CcCCccEEEeecceeecccCccc-ccCCCCCEEECccCcc
Q 037822          249 GPIPRDFGQKI--PFLTDLDISFNSLNGSVSKS---IC--NLQQLLTLVISNNNLSGEIPRLW-SNISSLYILDMSNNSL  320 (497)
Q Consensus       249 ~~~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~---l~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i  320 (497)
                       .+|..+. ..  ++|+.|++++|.+.+..|..   +.  .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+
T Consensus       633 -~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          633 -YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             -SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred             -cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence             5554332 22  34777777777776543321   12  2347888888888877 455443 4677888888888887


Q ss_pred             cccCCcccc-------cccCCcEEEeecceeeeeCCcccc--cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccC-
Q 037822          321 SGEIPESIG-------SLLSVRFLILCNNHISGEVPPSLK--NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS-  390 (497)
Q Consensus       321 ~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~-  390 (497)
                      .......+.       .+++|++|++++|.++ .+|..+.  .+++|+.|++++|.+.+ +|..+.. +++|+.|++++ 
T Consensus       710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~-L~~L~~L~Ls~N  786 (876)
T 4ecn_A          710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN-SSQLKAFGIRHQ  786 (876)
T ss_dssp             SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CTTCCEEECCCC
T ss_pred             CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc-CCCCCEEECCCC
Confidence            733222222       2348888888888887 6677665  78888888888888874 6766664 88888888866 


Q ss_pred             -----cccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcc
Q 037822          391 -----NYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKY  441 (497)
Q Consensus       391 -----n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~  441 (497)
                           |.+.+.+|..+..+++|+.|++++|++ +.+|..+.  ++|+.|++++|++
T Consensus       787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred             CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence                 666666777777777777777777777 35565543  3444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-42  Score=355.72  Aligned_cols=356  Identities=18%  Similarity=0.263  Sum_probs=219.4

Q ss_pred             CCcccccCCccccCCCCCCEEECcCCcCccc-----------------CCccCC--CCCCCCEEEcCCCccccccChhhh
Q 037822           50 HNSFVGSIPPSIGNLTFLKELYLSSNQMNGK-----------------FPENFG--QLSAVEVLDLSENQWEGIITETHF  110 (497)
Q Consensus        50 ~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~  110 (497)
                      +|.+++ +|.++.++++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|. .+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HH
Confidence            456665 677778888888888888887753                 777777  788888888888877766665 67


Q ss_pred             hcCCCCceEeccCccccceeee-cccCCCCCC------ccccEEEccCCcCCCCCCc--cccCCCCccEEEeeccccccc
Q 037822          111 RNLSNLKELALNKQSENISLIF-NISSHWIPP------FKLTFINIRSCQLGPKFPT--WLRNQTELTTLVLNNVRISDT  181 (497)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~  181 (497)
                      .++++|+.|++++|.   .... .++..+..+      ++|++|++++|++. .+|.  .++.+++|+.|++++|.+.+.
T Consensus       270 ~~l~~L~~L~Ls~n~---~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          270 KALPEMQLINVACNR---GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             TTCSSCCEEECTTCT---TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred             hcCCCCCEEECcCCC---CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence            778888888887753   0222 344444443      78888888888887 7777  889999999999999998877


Q ss_pred             cCchhhhcccCccEEEcccccccccCCc-cccccC-CCEEEccCCccccCCCCCccccceEecccCcccccCChhhh-cC
Q 037822          182 IPDWFWQLDLTLDELDVAYNELSGSIPN-SLGFRF-PATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG-QK  258 (497)
Q Consensus       182 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~  258 (497)
                      .| .+..+ ++|++|++++|.+. .+|. ...++. |+.+++++|.+.                      .+|..+. ..
T Consensus       346 ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~----------------------~lp~~~~~~~  400 (636)
T 4eco_A          346 LP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK----------------------YIPNIFDAKS  400 (636)
T ss_dssp             CC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS----------------------SCCSCCCTTC
T ss_pred             hh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc----------------------ccchhhhhcc
Confidence            77 66555 58899999988887 4433 334555 666666666555                      2222211 01


Q ss_pred             CCCccEEEcccCcceeccccccc-------CcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCccccc-
Q 037822          259 IPFLTDLDISFNSLNGSVSKSIC-------NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGS-  330 (497)
Q Consensus       259 ~~~L~~L~l~~~~i~~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-  330 (497)
                      +++|++|++++|.+.+..|..+.       .+++|++|++++|.+....+..+..+++|++|++++|.++......+.. 
T Consensus       401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~  480 (636)
T 4eco_A          401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE  480 (636)
T ss_dssp             SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred             cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence            23455555555555444444444       4455555555555555222222334555666666666555222222222 


Q ss_pred             ------ccCCcEEEeecceeeeeCCcccc--cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEc------cCcccccC
Q 037822          331 ------LLSVRFLILCNNHISGEVPPSLK--NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL------RSNYFNGT  396 (497)
Q Consensus       331 ------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l------~~n~~~~~  396 (497)
                            +++|++|++++|.++ .+|..+.  .+++|+.|++++|++.+ +|..+.. +++|+.|++      ++|++.+.
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~-l~~L~~L~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CSSCCEEECCSCBCTTCCBCCCC
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc-CCCCCEEECCCCcccccCccccc
Confidence                  125666666666665 4555554  56666666666666653 5555554 666666666      34555555


Q ss_pred             CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccc
Q 037822          397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYE  442 (497)
Q Consensus       397 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~  442 (497)
                      +|..+..+++|++|++++|++. .+|..+.  ++|+.|++++|++.
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             ChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence            6666666666666666666663 4555444  56666666666653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=345.40  Aligned_cols=452  Identities=19%  Similarity=0.151  Sum_probs=319.9

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL   96 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   96 (497)
                      ...++++++++.+++ +|..+.  ++|++|++++|.+.+..|.+|.++++|++|++++|.+++..|.+|.++++|++|++
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            355899999999985 565554  89999999999999777789999999999999999999888889999999999999


Q ss_pred             CCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc--cEEEee
Q 037822           97 SENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL--TTLVLN  174 (497)
Q Consensus        97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L--~~L~l~  174 (497)
                      ++|++++ ++..   .+++|++|++++|.+.   ...++..+..+++|++|++++|++....   +..+++|  +.|+++
T Consensus       108 s~N~l~~-lp~~---~l~~L~~L~Ls~N~l~---~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          108 SHNRLQN-ISCC---PMASLRHLDLSFNDFD---VLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLD  177 (562)
T ss_dssp             TTSCCCE-ECSC---CCTTCSEEECCSSCCS---BCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEE
T ss_pred             CCCcCCc-cCcc---ccccCCEEECCCCCcc---ccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEee
Confidence            9999986 5543   7999999999996543   1134467888899999999999887633   4444555  999999


Q ss_pred             cccc--ccccCchhhhcccCccEEEcccccccccCCccc--cccCCCEEEccCCcc-----ccCCC--CCccccceEecc
Q 037822          175 NVRI--SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL--GFRFPATVDLSSNSF-----EGPLP--LWSFNVTKLYLR  243 (497)
Q Consensus       175 ~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~l~~l~l~~~~~-----~~~~~--~~~~~L~~L~l~  243 (497)
                      +|.+  ++..|..+..+....-.++++.|.+.+..+...  .++.++.+++++|..     .+..+  ...+.++.+++.
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9998  777777766543223356777777766554432  456788888888741     11000  112356666666


Q ss_pred             cCcccccCChhhh--cCCCCccEEEcccCcceecccccc-----cCcCCccEEEeecceeecccC-cccc---cCCCCCE
Q 037822          244 DNSFSGPIPRDFG--QKIPFLTDLDISFNSLNGSVSKSI-----CNLQQLLTLVISNNNLSGEIP-RLWS---NISSLYI  312 (497)
Q Consensus       244 ~~~~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~~~~L~~  312 (497)
                      ++.+.+.......  ...++|++|++++|.+.+..|..+     ..++.|+.+++..+.+  ..| ..+.   ...+|+.
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence            6554422111111  124588889998888876666665     4455555555555544  223 1111   1256888


Q ss_pred             EECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh--hHhhhCCCCCEEEccC
Q 037822          313 LDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA--WIGESMPSLSILRLRS  390 (497)
Q Consensus       313 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~~~~~~~~L~~L~l~~  390 (497)
                      |++++|.+....  ....+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++.  ..+..+++|+.|++++
T Consensus       336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCC
Confidence            888888775222  1256788888888888888767778888888888888888887 3332  2233478888888888


Q ss_pred             cccccCCCc-ccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822          391 NYFNGTIPP-ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS  469 (497)
Q Consensus       391 n~~~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  469 (497)
                      |++++.+|. .+..+++|++|++++|++++..|..+.  ++|+.|++++|++..         .+..+..+++|+.|+++
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~---------ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS---------IPKDVTHLQALQELNVA  481 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC---------CCTTTTSSCCCSEEECC
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc---------cChhhcCCCCCCEEECC
Confidence            888864554 477788888888888888766665554  688888888887742         22223478889999999


Q ss_pred             CCcccccCChhhhccCCCCeEECCCCCC
Q 037822          470 SNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       470 ~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      +|.+++..+..+..+++|++|++++|++
T Consensus       482 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          482 SNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             SSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            9999843333488899999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-41  Score=340.39  Aligned_cols=422  Identities=17%  Similarity=0.171  Sum_probs=338.9

Q ss_pred             CEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccC
Q 037822           44 RYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK  123 (497)
Q Consensus        44 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  123 (497)
                      ++|++++|.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++++..+. .|.++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCC
Confidence            58999999998 6777665  8999999999999977778899999999999999999885555 899999999999999


Q ss_pred             ccccceeeecccCCCCCCccccEEEccCCcCCC-CCCccccCCCCccEEEeeccccccccCchhhhcccCc--cEEEccc
Q 037822          124 QSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTL--DELDVAY  200 (497)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~  200 (497)
                      |.+.     .++..  .+++|++|++++|++.. ..|..++.+++|+.|++++|.+.+.   .+..+ +++  +++++++
T Consensus        79 N~l~-----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~l~~  147 (520)
T 2z7x_B           79 NKLV-----KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI-AHLNISKVLLVL  147 (520)
T ss_dssp             SCCC-----EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG-TTSCEEEEEEEE
T ss_pred             Ccee-----ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcccc-ccceeeEEEeec
Confidence            7654     34444  78899999999999987 5788999999999999999998763   33333 466  9999999


Q ss_pred             ccc--cccCCcccccc--CCCEEEccCCccccCCCC----CccccceEecccCc-------ccccCChhhhcCCCCccEE
Q 037822          201 NEL--SGSIPNSLGFR--FPATVDLSSNSFEGPLPL----WSFNVTKLYLRDNS-------FSGPIPRDFGQKIPFLTDL  265 (497)
Q Consensus       201 ~~~--~~~~~~~~~~~--~l~~l~l~~~~~~~~~~~----~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L  265 (497)
                      |.+  .+..+..+..-  ....+++++|.+.+..+.    .+++|+.+++++|.       +.+.++ . +..+++|+.|
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~~L~~L  225 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K-LQTNPKLSNL  225 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G-GGGCTTCCEE
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-h-hccccchhhc
Confidence            998  55555544321  233567888877765544    25689999999986       554444 2 3578999999


Q ss_pred             EcccCcceeccccccc---CcCCccEEEeecceeecccCccc-----ccCCCCCEEECccCcccccCCcccccc---cCC
Q 037822          266 DISFNSLNGSVSKSIC---NLQQLLTLVISNNNLSGEIPRLW-----SNISSLYILDMSNNSLSGEIPESIGSL---LSV  334 (497)
Q Consensus       266 ~l~~~~i~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~~---~~L  334 (497)
                      +++++.+.+..+..+.   ..++|++|++++|.+.+..|..+     ..+++|+.+++++|.+ ......+..+   .+|
T Consensus       226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L  304 (520)
T 2z7x_B          226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNI  304 (520)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCC
T ss_pred             cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCce
Confidence            9999988753322221   24699999999999998888887     8899999999999998 2332444444   679


Q ss_pred             cEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc--CCCcccCCCCCCCEEEc
Q 037822          335 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG--TIPPELCKLPALHILDL  412 (497)
Q Consensus       335 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l  412 (497)
                      ++|++++|.+... + ....+++|++|++++|.+.+.+|..+.. +++|+.|++++|++++  .+|..+..+++|++|++
T Consensus       305 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          305 KNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             SEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             eEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            9999999998632 2 2368899999999999999777776654 9999999999999986  45567899999999999


Q ss_pred             cCCcCcCCCCc-cccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEE
Q 037822          413 SHNNLSGIIPP-CVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLN  491 (497)
Q Consensus       413 ~~n~i~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~  491 (497)
                      ++|++.+.+|. .+..+++|+.|++++|++....+.        .+  .++|+.|++++|.++ .+|..+..+++|++|+
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~l--~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~  450 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--------CL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN  450 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG--------SC--CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhh--------hh--cccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence            99999985665 488999999999999998643322        11  279999999999998 7888888999999999


Q ss_pred             CCCCCC
Q 037822          492 LSRNHL  497 (497)
Q Consensus       492 l~~n~i  497 (497)
                      +++|+|
T Consensus       451 L~~N~l  456 (520)
T 2z7x_B          451 VASNQL  456 (520)
T ss_dssp             CCSSCC
T ss_pred             CCCCcC
Confidence            999986

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-41  Score=355.10  Aligned_cols=371  Identities=19%  Similarity=0.215  Sum_probs=259.9

Q ss_pred             CcccccCCccccCCCCCCEEECcCCcCcc-----------------cCCccCC--CCCCCCEEEcCCCccccccChhhhh
Q 037822           51 NSFVGSIPPSIGNLTFLKELYLSSNQMNG-----------------KFPENFG--QLSAVEVLDLSENQWEGIITETHFR  111 (497)
Q Consensus        51 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~  111 (497)
                      |.+++ +|..|.++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|. .+.
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence            55554 66777777777777777777775                 2666666  777777777777776666664 677


Q ss_pred             cCCCCceEeccCcc-ccceeee-cccCC-------CCCCccccEEEccCCcCCCCCCc--cccCCCCccEEEeecccccc
Q 037822          112 NLSNLKELALNKQS-ENISLIF-NISSH-------WIPPFKLTFINIRSCQLGPKFPT--WLRNQTELTTLVLNNVRISD  180 (497)
Q Consensus       112 ~l~~L~~L~l~~~~-~~~~~~~-~~~~~-------~~~~~~L~~l~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~  180 (497)
                      ++++|+.|++++|. +.    . .++..       +..+++|+.|++++|.+. .+|.  .++.+++|+.|++++|.+. 
T Consensus       513 ~L~~L~~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-  586 (876)
T 4ecn_A          513 DLPELQSLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-  586 (876)
T ss_dssp             GCSSCCEEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred             CCCCCCEEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence            77777777777753 22    1 23332       233447777777777776 6666  7777777777777777776 


Q ss_pred             ccCchhhhcccCccEEEcccccccccCCc-cccccC-CCEEEccCCccccCCCCCc-----cccceEecccCcccccCCh
Q 037822          181 TIPDWFWQLDLTLDELDVAYNELSGSIPN-SLGFRF-PATVDLSSNSFEGPLPLWS-----FNVTKLYLRDNSFSGPIPR  253 (497)
Q Consensus       181 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-l~~l~l~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~  253 (497)
                      .+| .+..+ ++|+.|++++|.+. .+|. ...++. |+.|++++|.+. ..|..+     ++|+.|++++|.+.+.+|.
T Consensus       587 ~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          587 HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            555 45444 47777777777777 4443 335666 777888877777 333332     2388888888888765442


Q ss_pred             hhh----cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCccccc--------CCCCCEEECccCccc
Q 037822          254 DFG----QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSN--------ISSLYILDMSNNSLS  321 (497)
Q Consensus       254 ~~~----~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~L~l~~n~i~  321 (497)
                      ...    -..++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+..        +++|+.|++++|+++
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~  741 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT  741 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc
Confidence            110    13457889999999888444444457888999999998887 55544322        238999999999988


Q ss_pred             ccCCcccc--cccCCcEEEeecceeeeeCCcccccCCCCCEEecCC------CcCcccCChhHhhhCCCCCEEEccCccc
Q 037822          322 GEIPESIG--SLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD------NQLSGNIPAWIGESMPSLSILRLRSNYF  393 (497)
Q Consensus       322 ~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~i~~~~~~~~~~~~~~L~~L~l~~n~~  393 (497)
                       .+|..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++      |.+.+.+|..+.. +++|+.|++++|++
T Consensus       742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~-L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT-CPSLIQLQIGSNDI  818 (876)
T ss_dssp             -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC
T ss_pred             -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc-CCCCCEEECCCCCC
Confidence             6676666  88999999999999885 788888899999999976      7777788887776 99999999999999


Q ss_pred             ccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCc
Q 037822          394 NGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVK  440 (497)
Q Consensus       394 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~  440 (497)
                       +.+|..+.  ++|+.|++++|++....+..+.....+..+.+..++
T Consensus       819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          819 -RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             -CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             -CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence             47887655  699999999999986666665544444444443333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.4e-38  Score=324.79  Aligned_cols=467  Identities=18%  Similarity=0.120  Sum_probs=339.4

Q ss_pred             CCccccCCCCCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCC
Q 037822            3 VSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFP   82 (497)
Q Consensus         3 ~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~   82 (497)
                      +|++...+.+.   ..-+..+.++-.++ .+|..+.  +++++||+++|.++.+.+.+|.++++|++|++++|.++...+
T Consensus        20 ~p~~~~~c~~~---~~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~   93 (635)
T 4g8a_A           20 IPESWEPCVEV---VPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED   93 (635)
T ss_dssp             -----CCSEEE---ETTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCcccc---CCCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh
Confidence            45555444311   13456788887887 5565554  589999999999998788899999999999999999998878


Q ss_pred             ccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC-CCCcc
Q 037822           83 ENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTW  161 (497)
Q Consensus        83 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~  161 (497)
                      .+|.++++|++|++++|++++ ++...|.++++|++|++++|.+.    ...+..+..+++|++|++++|.+.. ..|..
T Consensus        94 ~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~Ls~N~l~----~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  168 (635)
T 4g8a_A           94 GAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFKLPEY  168 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEECTTSCCC----CSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             hHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEECCCCcCC----CCChhhhhcCcccCeeccccCccccCCCchh
Confidence            889999999999999999987 55558999999999999996443    2233457889999999999999875 46788


Q ss_pred             ccCCCCccEEEeeccccccccCchhhhc---ccCccEEEcccccccccCCccccccCCCEEEccCCccccC---------
Q 037822          162 LRNQTELTTLVLNNVRISDTIPDWFWQL---DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGP---------  229 (497)
Q Consensus       162 l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------  229 (497)
                      ++.+++|+.|++++|.+.+..+..+..+   ......++++.|.+....+..+....+..+++.++.....         
T Consensus       169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l  248 (635)
T 4g8a_A          169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL  248 (635)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred             hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCC
Confidence            8999999999999999987777766543   2234578888998876665555444455555555422100         


Q ss_pred             ----------------------CCCC------------------------------ccccceEecccCcccccCChhhhc
Q 037822          230 ----------------------LPLW------------------------------SFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       230 ----------------------~~~~------------------------------~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                                            ....                              ..+++.+.+.++.+....+   ..
T Consensus       249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~  325 (635)
T 4g8a_A          249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FS  325 (635)
T ss_dssp             TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GG
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cc
Confidence                                  0000                              0022222222222221100   11


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCccccc--CCcccccccCCc
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGE--IPESIGSLLSVR  335 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~~~L~  335 (497)
                      ....++.|++.++.+....+   ..++.|+.+.+..|....  +.....+++|+.+++++|.+...  .+..+..+.+|+
T Consensus       326 ~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~  400 (635)
T 4g8a_A          326 YNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK  400 (635)
T ss_dssp             SCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred             cchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC--Ccccccccccccchhhccccccccccccchhhhhhhh
Confidence            23344455555544432211   123445555555554432  12234578899999998887532  344556678899


Q ss_pred             EEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCC
Q 037822          336 FLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN  415 (497)
Q Consensus       336 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  415 (497)
                      ++++..+... ..+..+..+++|+.+++..+......+...+..+++++.++++.|.+....+..+..++.|+.|++++|
T Consensus       401 ~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N  479 (635)
T 4g8a_A          401 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  479 (635)
T ss_dssp             EEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             hhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence            9999988876 445667889999999999998776666666666899999999999999888888999999999999999


Q ss_pred             cC-cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCC
Q 037822          416 NL-SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSR  494 (497)
Q Consensus       416 ~i-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~  494 (497)
                      .+ ....|..+..+++|+.|++++|++..        ..+..+.++++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~--------l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          480 SFQENFLPDIFTELRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             ccccccCchhhhhccccCEEECCCCccCC--------cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence            75 44578899999999999999999854        3345578899999999999999988899999999999999999


Q ss_pred             CCC
Q 037822          495 NHL  497 (497)
Q Consensus       495 n~i  497 (497)
                      |+|
T Consensus       552 N~l  554 (635)
T 4g8a_A          552 NHI  554 (635)
T ss_dssp             SCC
T ss_pred             CcC
Confidence            986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-37  Score=307.90  Aligned_cols=384  Identities=19%  Similarity=0.173  Sum_probs=227.7

Q ss_pred             ccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcc-cCCccCCCCCCCCEEEcC
Q 037822           19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~   97 (497)
                      -+.++.+++.++ .+|. +  .++|++|++++|.+.+..|..|.++++|++|++++|.+.. ..+..|.++++|++|+++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            445777777776 3444 2  2678888888888877777778888888888888887753 445667888888888888


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCcc-ccCCCCccEEEeecc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTW-LRNQTELTTLVLNNV  176 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~  176 (497)
                      +|++++..+. .+.++++|++|++++|.+...  ......+..+++|++|++++|++....|.. +..+++|+.|++++|
T Consensus        88 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           88 YNQFLQLETG-AFNGLANLEVLTLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TCTTCEECTT-TTTTCTTCCEEECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             CCccCccChh-hccCcccCCEEeCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            8887765444 677788888888877543210  011123566677888888888877666655 788888888888888


Q ss_pred             ccccccCchhhhcc-cCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhh
Q 037822          177 RISDTIPDWFWQLD-LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDF  255 (497)
Q Consensus       177 ~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  255 (497)
                      .+.+..+..+.... .+++.+++++|.+.+..+..+...            ........++|+.|++++|.+.+..+..+
T Consensus       165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE------------KCGNPFKNTSITTLDLSGNGFKESMAKRF  232 (455)
T ss_dssp             CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH------------HHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred             cccccChhhhhccccccccccccccCcccccchhhcccc------------ccccccccceeeeEecCCCcccccchhhh
Confidence            88777666655432 367777777776654332211100            00001112356666666666655444444


Q ss_pred             hcC--CCCccEEEcccCcceec----------ccccccC--cCCccEEEeecceeecccCcccccCCCCCEEECccCccc
Q 037822          256 GQK--IPFLTDLDISFNSLNGS----------VSKSICN--LQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS  321 (497)
Q Consensus       256 ~~~--~~~L~~L~l~~~~i~~~----------~~~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  321 (497)
                      ...  .++++.|++++|...+.          .+..+..  .++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  312 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN  312 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence            321  25666666666643321          1111111  245566666666555555555555566666666666555


Q ss_pred             ccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCccc
Q 037822          322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL  401 (497)
Q Consensus       322 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  401 (497)
                      +..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|++++..+..+
T Consensus       313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~  391 (455)
T 3v47_A          313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQLKSVPDGIF  391 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTT
T ss_pred             ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc-cccccEEECCCCccccCCHhHh
Confidence            555555555556666666666555444555555556666666666555333433332 5556666666655554333344


Q ss_pred             CCCCCCCEEEccCCcCcCCCC
Q 037822          402 CKLPALHILDLSHNNLSGIIP  422 (497)
Q Consensus       402 ~~l~~L~~L~l~~n~i~~~~~  422 (497)
                      ..+++|++|++++|++.+..|
T Consensus       392 ~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          392 DRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCcccEEEccCCCcccCCC
Confidence            555556666666665554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1e-37  Score=316.96  Aligned_cols=428  Identities=19%  Similarity=0.145  Sum_probs=324.0

Q ss_pred             cCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCc
Q 037822           38 GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLK  117 (497)
Q Consensus        38 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  117 (497)
                      ..+...++++++++.++ .+|..+.  ++|++|++++|.+++..+.+|.++++|++|++++|.+++..+. .|.++++|+
T Consensus        28 ~~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~  103 (562)
T 3a79_B           28 FSNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLE  103 (562)
T ss_dssp             -----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCC
T ss_pred             cccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCC
Confidence            34455689999999998 4776654  8999999999999977778999999999999999999985554 899999999


Q ss_pred             eEeccCccccceeeecccCCCCCCccccEEEccCCcCCC-CCCccccCCCCccEEEeeccccccccCchhhhcccCccEE
Q 037822          118 ELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDEL  196 (497)
Q Consensus       118 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  196 (497)
                      +|++++|.+.     .++..  .+++|++|++++|++.. ..|..++.+++|+.|++++|.+.+.....+..+  +|+++
T Consensus       104 ~L~Ls~N~l~-----~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L--~L~~L  174 (562)
T 3a79_B          104 YLDVSHNRLQ-----NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL--HLSCI  174 (562)
T ss_dssp             EEECTTSCCC-----EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS--CEEEE
T ss_pred             EEECCCCcCC-----ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc--eeeEE
Confidence            9999997544     34444  78899999999999986 456899999999999999999876433333222  34999


Q ss_pred             Ecccccc--cccCCccccccC--CCEEEccCCccccCCCC----CccccceEecccCc-----ccccCChhhhcCCCCcc
Q 037822          197 DVAYNEL--SGSIPNSLGFRF--PATVDLSSNSFEGPLPL----WSFNVTKLYLRDNS-----FSGPIPRDFGQKIPFLT  263 (497)
Q Consensus       197 ~l~~~~~--~~~~~~~~~~~~--l~~l~l~~~~~~~~~~~----~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~~L~  263 (497)
                      ++++|.+  .+..+..+..-.  .-.++++.|.+.+..+.    ...+|+.+++++|.     +.+.. .. +...+.++
T Consensus       175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~-l~~l~~L~  252 (562)
T 3a79_B          175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE-LTRGPTLL  252 (562)
T ss_dssp             EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH-HHSCSSCE
T ss_pred             EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HH-HhccCcce
Confidence            9999998  666665553222  22457777777664443    24588999999874     22111 12 25688999


Q ss_pred             EEEcccCcceeccccc---ccCcCCccEEEeecceeecccCccc-----ccCCCCCEEECccCcccccCC-ccccc---c
Q 037822          264 DLDISFNSLNGSVSKS---ICNLQQLLTLVISNNNLSGEIPRLW-----SNISSLYILDMSNNSLSGEIP-ESIGS---L  331 (497)
Q Consensus       264 ~L~l~~~~i~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~-~~l~~---~  331 (497)
                      .+++.++.+.+.....   ....++|++|++++|.+.+..|..+     ..++.|+.+++..+.+  ..| ..+..   .
T Consensus       253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~  330 (562)
T 3a79_B          253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE  330 (562)
T ss_dssp             EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred             EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence            9999888765321111   1224599999999999987788766     5666666666666665  222 22222   2


Q ss_pred             cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC--CCcccCCCCCCCE
Q 037822          332 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT--IPPELCKLPALHI  409 (497)
Q Consensus       332 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~  409 (497)
                      .+|++|++++|.+... + ....+++|++|++++|.+.+..+..+.. +++|+.|++++|++++.  .|..+..+++|++
T Consensus       331 ~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          331 MNIKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             CcceEEEccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence            6799999999998532 1 2267899999999999999767766654 99999999999999852  2456899999999


Q ss_pred             EEccCCcCcCCCC-ccccCCCCCcccCCCCCcccccceeeeeCccccccccc-cccCEEEccCCcccccCChhhhccCCC
Q 037822          410 LDLSHNNLSGIIP-PCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL-YLVNLMDLSSNNLSGEMPVELTRLIHL  487 (497)
Q Consensus       410 L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L  487 (497)
                      |++++|++.+.+| ..+..+++|+.|++++|++....+.           .+ ++|+.|++++|.++ .+|..+..+++|
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L  475 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNNRIM-SIPKDVTHLQAL  475 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred             EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-----------hhcCcCCEEECCCCcCc-ccChhhcCCCCC
Confidence            9999999998455 4588999999999999998543222           22 68999999999998 677777799999


Q ss_pred             CeEECCCCCC
Q 037822          488 GTLNLSRNHL  497 (497)
Q Consensus       488 ~~l~l~~n~i  497 (497)
                      ++|++++|+|
T Consensus       476 ~~L~L~~N~l  485 (562)
T 3a79_B          476 QELNVASNQL  485 (562)
T ss_dssp             SEEECCSSCC
T ss_pred             CEEECCCCCC
Confidence            9999999986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.1e-37  Score=305.76  Aligned_cols=366  Identities=19%  Similarity=0.216  Sum_probs=297.1

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEE
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVG-SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLD   95 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   95 (497)
                      ++|++|++++|.+++..+..|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.++...|..+.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            489999999999998889999999999999999999863 4567899999999999999999988899999999999999


Q ss_pred             cCCCccccccCh-hhhhcCCCCceEeccCccccceeeecccCC-CCCCccccEEEccCCcCCCCCCccccCC--CCccEE
Q 037822           96 LSENQWEGIITE-THFRNLSNLKELALNKQSENISLIFNISSH-WIPPFKLTFINIRSCQLGPKFPTWLRNQ--TELTTL  171 (497)
Q Consensus        96 l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~l--~~L~~L  171 (497)
                      +++|.+++..+. ..+..+++|++|++++|.+.    ...+.. +..+++|++|++++|++....+..+..+  ++|+.+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK----KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC----SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccC----ccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            999999864332 34889999999999996543    223443 6788999999999999998888888776  789999


Q ss_pred             EeeccccccccCchhhh-------cccCccEEEcccccccccCCcccc----ccCCCEEEccCCccccCCCCCccccceE
Q 037822          172 VLNNVRISDTIPDWFWQ-------LDLTLDELDVAYNELSGSIPNSLG----FRFPATVDLSSNSFEGPLPLWSFNVTKL  240 (497)
Q Consensus       172 ~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~----~~~l~~l~l~~~~~~~~~~~~~~~L~~L  240 (497)
                      ++++|.+.+..+..+..       ..++|++|++++|.+.+..+..+.    ...++.++++++...+....        
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------  257 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------  257 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc--------
Confidence            99999987654433220       114799999999988876665442    36777778777765432111        


Q ss_pred             ecccCcccccCChhhh-cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCc
Q 037822          241 YLRDNSFSGPIPRDFG-QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS  319 (497)
Q Consensus       241 ~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  319 (497)
                         .+.+.+..+..+. ...+.|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       258 ---~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  334 (455)
T 3v47_A          258 ---HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF  334 (455)
T ss_dssp             ---CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ---hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence               1111111111111 134789999999999998888899999999999999999997778889999999999999999


Q ss_pred             ccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCC
Q 037822          320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP  398 (497)
Q Consensus       320 i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  398 (497)
                      +++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+.|++++|++++..|
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCC
Confidence            98777888999999999999999999888889999999999999999998 5666565569999999999999986544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7e-37  Score=300.59  Aligned_cols=356  Identities=24%  Similarity=0.320  Sum_probs=270.0

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCC-------------CEEECcCCcCcccCCcc
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFL-------------KELYLSSNQMNGKFPEN   84 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L-------------~~L~l~~n~~~~~~~~~   84 (497)
                      +|++|++++|.+ +.+|.+++.+++|++|++++|.+.+.+|.+++++++|             ++|++++|.+++ .|..
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~   89 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL   89 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence            899999999999 5889999999999999999999998999999998875             999999999984 4442


Q ss_pred             CCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccC
Q 037822           85 FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRN  164 (497)
Q Consensus        85 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~  164 (497)
                         .++|++|++++|.+++ ++.    .+++|+.|++++|.+.     .++..   .++|++|++++|++.. +| .++.
T Consensus        90 ---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~-----~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~  151 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLK-----ALSDL---PPLLEYLGVSNNQLEK-LP-ELQN  151 (454)
T ss_dssp             ---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-----CCCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             ---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccC-----cccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence               4799999999999987 443    2489999999997543     12211   2689999999999876 66 5999


Q ss_pred             CCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEeccc
Q 037822          165 QTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD  244 (497)
Q Consensus       165 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~  244 (497)
                      +++|+.|++++|.+++ .|...    .+|++|++++|.+.+ ++....++.++.+++++|.+.+ .|....+|+.|++++
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~  224 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGN  224 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCS
T ss_pred             CCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcC
Confidence            9999999999999885 44432    489999999999986 5666678899999999999987 444557999999999


Q ss_pred             CcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccC
Q 037822          245 NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEI  324 (497)
Q Consensus       245 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  324 (497)
                      |.+. .+|.  +..+++|++|++++|.+.+ .|.   .+++|++|++++|.+.+ +|..   +++|++|++++|.+++..
T Consensus       225 n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          225 NILE-ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             SCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred             CcCC-cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence            9988 6664  4589999999999999875 332   24799999999999884 5543   488999999999988532


Q ss_pred             CcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCC
Q 037822          325 PESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKL  404 (497)
Q Consensus       325 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l  404 (497)
                       .   ..++|++|++++|.+.+. +.   ..++|+.|++++|.+. .+|..    +++|+.|++++|+++ .+|.   .+
T Consensus       294 -~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~L~~N~l~-~lp~---~l  356 (454)
T 1jl5_A          294 -E---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLI-ELPAL----PPRLERLIASFNHLA-EVPE---LP  356 (454)
T ss_dssp             -C---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCC---CC
T ss_pred             -C---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCccc-ccccc----CCcCCEEECCCCccc-cccc---hh
Confidence             1   136899999999998742 21   1258999999999998 46653    689999999999998 5665   47


Q ss_pred             CCCCEEEccCCcCcC--CCCccccCC
Q 037822          405 PALHILDLSHNNLSG--IIPPCVGNF  428 (497)
Q Consensus       405 ~~L~~L~l~~n~i~~--~~~~~l~~l  428 (497)
                      ++|++|++++|++.+  .+|.++.++
T Consensus       357 ~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          357 QNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             hhccEEECCCCCCCcCCCChHHHHhh
Confidence            899999999999998  677777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.6e-35  Score=288.07  Aligned_cols=344  Identities=24%  Similarity=0.340  Sum_probs=222.3

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL   96 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   96 (497)
                      +++++|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+++..+  +..+++|++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            488999999998874 44 488899999999999988854 33 8899999999999999885443  888999999999


Q ss_pred             CCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecc
Q 037822           97 SENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV  176 (497)
Q Consensus        97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  176 (497)
                      ++|.+++. +  .+.++++|++|++++|.+.     .+ ..+..+++|++++++. .+.. . ..++.+++|+.|++++|
T Consensus       120 ~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~-----~~-~~~~~l~~L~~L~l~~-~~~~-~-~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          120 FNNQITDI-D--PLKNLTNLNRLELSSNTIS-----DI-SALSGLTSLQQLSFGN-QVTD-L-KPLANLTTLERLDISSN  187 (466)
T ss_dssp             CSSCCCCC-G--GGTTCTTCSEEEEEEEEEC-----CC-GGGTTCTTCSEEEEEE-SCCC-C-GGGTTCTTCCEEECCSS
T ss_pred             CCCCCCCC-h--HHcCCCCCCEEECCCCccC-----CC-hhhccCCcccEeecCC-cccC-c-hhhccCCCCCEEECcCC
Confidence            99988764 2  3788888888888875322     22 2355666677777653 2221 1 23666667777777666


Q ss_pred             ccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhh
Q 037822          177 RISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG  256 (497)
Q Consensus       177 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  256 (497)
                      .+.+.  ..+..+ ++|++|++++|.+.+..+ ...                     +++|+.|++++|.+.+ ++  ..
T Consensus       188 ~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~-~~~---------------------l~~L~~L~l~~n~l~~-~~--~l  239 (466)
T 1o6v_A          188 KVSDI--SVLAKL-TNLESLIATNNQISDITP-LGI---------------------LTNLDELSLNGNQLKD-IG--TL  239 (466)
T ss_dssp             CCCCC--GGGGGC-TTCSEEECCSSCCCCCGG-GGG---------------------CTTCCEEECCSSCCCC-CG--GG
T ss_pred             cCCCC--hhhccC-CCCCEEEecCCccccccc-ccc---------------------cCCCCEEECCCCCccc-ch--hh
Confidence            65532  123222 355555555555443221 111                     2345555555555442 21  12


Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      ..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|+.|++++|++.+..+  +..+++|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTY  313 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence            456777777777777764433  66677777777777776632 22 6667777777777777764332  566777777


Q ss_pred             EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |++++|.+.+..+  +..+++|+.|++++|.+.+ ++ .+. .+++|+.|++++|++++..|  +..+++|+.|++++|+
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS-SLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCC-ch-hhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            7777777664333  5667777777777777663 22 232 36777777777777765443  6667777777777777


Q ss_pred             CcC
Q 037822          417 LSG  419 (497)
Q Consensus       417 i~~  419 (497)
                      +++
T Consensus       387 ~~~  389 (466)
T 1o6v_A          387 WTN  389 (466)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.6e-36  Score=294.77  Aligned_cols=396  Identities=20%  Similarity=0.207  Sum_probs=231.8

Q ss_pred             CCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCC-------------CEEEcCCCcccccc
Q 037822           39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAV-------------EVLDLSENQWEGII  105 (497)
Q Consensus        39 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~  105 (497)
                      ..++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+.+|             ++|++++|.+++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            458999999999999 5899999999999999999999998999999998865             999999998876 3


Q ss_pred             ChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCch
Q 037822          106 TETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW  185 (497)
Q Consensus       106 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  185 (497)
                      +.    ..++|+.|++++|.+.     .++..   .++|++|++++|++.. ++..   .++|++|++++|.+++ .| .
T Consensus        87 p~----~~~~L~~L~l~~n~l~-----~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~  148 (454)
T 1jl5_A           87 PE----LPPHLESLVASCNSLT-----ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-E  148 (454)
T ss_dssp             CS----CCTTCSEEECCSSCCS-----SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-C
T ss_pred             CC----CcCCCCEEEccCCcCC-----ccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-c
Confidence            33    2478889999886443     23332   3678888888887764 2211   1688888888888875 55 4


Q ss_pred             hhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCC-CCccccceEecccCcccccCChhhhcCCCCccE
Q 037822          186 FWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLP-LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTD  264 (497)
Q Consensus       186 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  264 (497)
                      +..+ ++|++|++++|.+++ +|..  ...++.+++++|.+.+... ...++|+.+++++|.+.+ +|.    ..++|++
T Consensus       149 ~~~l-~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~  219 (454)
T 1jl5_A          149 LQNS-SFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPD----LPLSLES  219 (454)
T ss_dssp             CTTC-TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCC----CCTTCCE
T ss_pred             cCCC-CCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCC----CcCcccE
Confidence            5554 588888888888875 3332  2478888888888776432 124578888888888763 332    2357888


Q ss_pred             EEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeeccee
Q 037822          265 LDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI  344 (497)
Q Consensus       265 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~  344 (497)
                      |++++|.+. ..| .+..+++|++|++++|.+. .+|..   +++|+.|++++|.+.+ .+..   +++|++|++++|.+
T Consensus       220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l  289 (454)
T 1jl5_A          220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF  289 (454)
T ss_dssp             EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred             EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence            888888877 444 4777888888888888877 34432   4778888888888774 3332   36788888888887


Q ss_pred             eeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCcc
Q 037822          345 SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC  424 (497)
Q Consensus       345 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  424 (497)
                      .+. +.   ..++|+.|++++|.+.+ ++.    .+++|+.|++++|++++ +|..   +++|++|++++|+++ .+|. 
T Consensus       290 ~~l-~~---~~~~L~~L~l~~N~l~~-i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-  354 (454)
T 1jl5_A          290 SGL-SE---LPPNLYYLNASSNEIRS-LCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-  354 (454)
T ss_dssp             SEE-SC---CCTTCCEEECCSSCCSE-ECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred             Ccc-cC---cCCcCCEEECcCCcCCc-ccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-
Confidence            642 21   12678888888888773 332    13578888888888874 5543   578888888888887 4554 


Q ss_pred             ccCCCCCcccCCCCCcccc--cceeeeeCcc-----ccccccccccCEEEccCCcccc--cCChhhhccCCCCeEECCCC
Q 037822          425 VGNFSGMKVEPPDSVKYEG--SLQVVLKGSE-----YVFYTTLYLVNLMDLSSNNLSG--EMPVELTRLIHLGTLNLSRN  495 (497)
Q Consensus       425 l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n  495 (497)
                        .+++|+.|++++|++..  .++..+....     ......+++|+.|++++|.+++  .+|.      +++.|.+++|
T Consensus       355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~  426 (454)
T 1jl5_A          355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSE  426 (454)
T ss_dssp             --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------
T ss_pred             --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCc
Confidence              46788888888887765  2222111000     0000112678888888888876  3443      3445555554


Q ss_pred             C
Q 037822          496 H  496 (497)
Q Consensus       496 ~  496 (497)
                      .
T Consensus       427 ~  427 (454)
T 1jl5_A          427 R  427 (454)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=284.28  Aligned_cols=323  Identities=19%  Similarity=0.177  Sum_probs=239.4

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .-+.++.+++.++ .+|..+.  +++++|++++|.+.+..+..|.++++|++|++++|.++...|.+|.++++|++|+++
T Consensus        12 ~~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           12 QDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            4567888888888 4555553  689999999999988778889999999999999999998888899999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+++ ++...|.++++|++|++++|.+.    ...+..+..+++|++|++++|.+....+..|..+++|+.|++++|.
T Consensus        89 ~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A           89 SNRLKL-IPLGVFTGLSNLTKLDISENKIV----ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             SSCCCS-CCTTSSTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred             CCcCCc-cCcccccCCCCCCEEECCCCccc----cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence            999886 44447788888888888875332    2334455556666666666666655555566666666666666666


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                      +++..+..+..+ ++|+.|++++|.                                            +.+ ++...+.
T Consensus       164 l~~~~~~~l~~l-~~L~~L~l~~n~--------------------------------------------i~~-~~~~~~~  197 (477)
T 2id5_A          164 LTSIPTEALSHL-HGLIVLRLRHLN--------------------------------------------INA-IRDYSFK  197 (477)
T ss_dssp             CSSCCHHHHTTC-TTCCEEEEESCC--------------------------------------------CCE-ECTTCSC
T ss_pred             CcccChhHhccc-CCCcEEeCCCCc--------------------------------------------CcE-eChhhcc
Confidence            654333333322 244444444333                                            332 2222335


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .+++|++|++++|...+..+.......+|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus       198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (477)
T 2id5_A          198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI  277 (477)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred             cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence            67889999999888766666666666789999999998884333567888899999999998887777788888999999


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      ++++|.+.+..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++.+
T Consensus       278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             ECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             ECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccC
Confidence            99999988777888888999999999999888 5666555558889999999988874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=287.02  Aligned_cols=330  Identities=20%  Similarity=0.171  Sum_probs=269.8

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|++++|.+++..+..|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            89999999999998888999999999999999999998889999999999999999999997666778999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+.+..+. .+..+++|+.|++++|.+.    ...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus       113 ~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          113 ENKIVILLDY-MFQDLYNLKSLEVGDNDLV----YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             TSCCCEECTT-TTTTCTTCCEEEECCTTCC----EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             CCccccCChh-HccccccCCEEECCCCccc----eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            9999875554 8999999999999997443    3445678889999999999999987777789999999999999999


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                      +.+..+..+..+ ++|++|++++|..                                            .+.++...+ 
T Consensus       188 i~~~~~~~~~~l-~~L~~L~l~~~~~--------------------------------------------~~~~~~~~~-  221 (477)
T 2id5_A          188 INAIRDYSFKRL-YRLKVLEISHWPY--------------------------------------------LDTMTPNCL-  221 (477)
T ss_dssp             CCEECTTCSCSC-TTCCEEEEECCTT--------------------------------------------CCEECTTTT-
T ss_pred             CcEeChhhcccC-cccceeeCCCCcc--------------------------------------------ccccCcccc-
Confidence            886555444433 3555555554432                                            223333332 


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      ...+|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus       222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred             cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence            34589999999999987666788999999999999999997777889999999999999999998888999999999999


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE  400 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  400 (497)
                      ++++|.+++..+..|..+++|+.|++++|++.........  ......+.+.++...+..|..
T Consensus       302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--FRRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--HTTTTSSCCTTCCCBEEESGG
T ss_pred             ECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--HhhhhccccCccCceeCCchH
Confidence            9999999866666788999999999999998744332221  123334445555444434433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.3e-34  Score=280.97  Aligned_cols=329  Identities=26%  Similarity=0.348  Sum_probs=266.5

Q ss_pred             CCCCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCC
Q 037822           10 LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLS   89 (497)
Q Consensus        10 l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~   89 (497)
                      +.++..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +.++++|++|++++|.+++..  .+..++
T Consensus        61 l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~  134 (466)
T 1o6v_A           61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLT  134 (466)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred             CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcCCC
Confidence            3344556699999999999996644  9999999999999999985543  999999999999999998543  389999


Q ss_pred             CCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCcc
Q 037822           90 AVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELT  169 (497)
Q Consensus        90 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~  169 (497)
                      +|++|++++|.+.+. +  .+..+++|+.|.+.++.     . .. ..+..+++|++|++++|.+...  ..+..+++|+
T Consensus       135 ~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~~~-----~-~~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  202 (466)
T 1o6v_A          135 NLNRLELSSNTISDI-S--ALSGLTSLQQLSFGNQV-----T-DL-KPLANLTTLERLDISSNKVSDI--SVLAKLTNLE  202 (466)
T ss_dssp             TCSEEEEEEEEECCC-G--GGTTCTTCSEEEEEESC-----C-CC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             CCCEEECCCCccCCC-h--hhccCCcccEeecCCcc-----c-Cc-hhhccCCCCCEEECcCCcCCCC--hhhccCCCCC
Confidence            999999999999863 2  58999999999996421     1 11 2377889999999999998653  4588999999


Q ss_pred             EEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccc
Q 037822          170 TLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSG  249 (497)
Q Consensus       170 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~  249 (497)
                      .|++++|.+.+..+  +.. .++|++|++++|.+.+. +....++                     +|+.|++++|.+.+
T Consensus       203 ~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~-~~l~~l~---------------------~L~~L~l~~n~l~~  257 (466)
T 1o6v_A          203 SLIATNNQISDITP--LGI-LTNLDELSLNGNQLKDI-GTLASLT---------------------NLTDLDLANNQISN  257 (466)
T ss_dssp             EEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-GGGGGCT---------------------TCSEEECCSSCCCC
T ss_pred             EEEecCCccccccc--ccc-cCCCCEEECCCCCcccc-hhhhcCC---------------------CCCEEECCCCcccc
Confidence            99999999986655  333 36899999999988742 2222333                     56666666666553


Q ss_pred             cCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccc
Q 037822          250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG  329 (497)
Q Consensus       250 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  329 (497)
                      ..+   +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +.
T Consensus       258 ~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~  328 (466)
T 1o6v_A          258 LAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS  328 (466)
T ss_dssp             CGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred             chh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence            332   3578999999999999986544  8889999999999999984333  7889999999999999986654  78


Q ss_pred             cccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          330 SLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       330 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      .+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..|  +. .+++|+.|++++|++++
T Consensus       329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA-NLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT-TCTTCCEEECCCEEEEC
T ss_pred             cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh-cCCCCCEEeccCCcccC
Confidence            899999999999999754  578899999999999999996666  33 49999999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-33  Score=276.73  Aligned_cols=353  Identities=19%  Similarity=0.151  Sum_probs=205.3

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +|++|++++|.+++. | .+..+++|++|++++|.+.+. |  +..+++|++|++++|.+++. +  +..+++|++|+++
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence            777778877777754 4 577777778888877777643 3  67777777777777777743 2  6777777777777


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|++++. +   +..+++|+.|++++|.+..     +  .+..+++|++|++++|+....+  .++.+++|+.|++++|.
T Consensus       115 ~N~l~~l-~---~~~l~~L~~L~l~~N~l~~-----l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          115 TNKLTKL-D---VSQNPLLTYLNCARNTLTE-----I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             SSCCSCC-C---CTTCTTCCEEECTTSCCSC-----C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             CCcCCee-c---CCCCCcCCEEECCCCccce-----e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            7777653 2   6667777777777654331     1  1444555555555555332222  24445555555555555


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                      +++. |  +..+ ++|++|++++|.++                       +......++|+.|++++|++.+ +|   ..
T Consensus       182 l~~l-~--l~~l-~~L~~L~l~~N~l~-----------------------~~~l~~l~~L~~L~Ls~N~l~~-ip---~~  230 (457)
T 3bz5_A          182 ITEL-D--VSQN-KLLNRLNCDTNNIT-----------------------KLDLNQNIQLTFLDCSSNKLTE-ID---VT  230 (457)
T ss_dssp             CCCC-C--CTTC-TTCCEEECCSSCCS-----------------------CCCCTTCTTCSEEECCSSCCSC-CC---CT
T ss_pred             ccee-c--cccC-CCCCEEECcCCcCC-----------------------eeccccCCCCCEEECcCCcccc-cC---cc
Confidence            5431 1  2111 24444444444433                       2211122344455555554442 33   13


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .+++|+.|++++|.+.+..   +..+++|+.|+++.|              +|+.|++++|.+.+..+  ++.+++|++|
T Consensus       231 ~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L  291 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKEL  291 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred             ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEE
Confidence            4555555555555554322   233445555554332              34455555555443333  3456667777


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL  417 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i  417 (497)
                      ++++|...+.+|.   ..++|+.|++++              +++|+.|++++|++++ ++  +..+++|+.|++++|++
T Consensus       292 ~Ls~n~~l~~l~~---~~~~L~~L~l~~--------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          292 DVTHNTQLYLLDC---QAAGITELDLSQ--------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             CCTTCTTCCEEEC---TTCCCSCCCCTT--------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             ECCCCcccceecc---CCCcceEechhh--------------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCC
Confidence            7776665444432   234444444433              3678888888888885 33  78888888888888888


Q ss_pred             cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhh
Q 037822          418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELT  482 (497)
Q Consensus       418 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~  482 (497)
                      ++        ++.|..|+++.+.+...             +.+..++.+++++|.+++.+|..+.
T Consensus       352 ~~--------l~~L~~L~l~~n~l~g~-------------~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          352 QD--------FSSVGKIPALNNNFEAE-------------GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CB--------CTTGGGSSGGGTSEEEE-------------EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             CC--------ccccccccccCCcEEec-------------ceeeecCccccccCcEEEEcChhHh
Confidence            85        23455566666655322             2356677889999999888876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.6e-33  Score=271.50  Aligned_cols=307  Identities=21%  Similarity=0.228  Sum_probs=150.6

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|+++++.++...+..|..+++|++|++++|.+.+..+.+|.++++|++|++++|.++...+..+.++++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            55566666665554444445555666666666665554444555566666666666666555545555556666666666


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+++ ++...+.++++|++|+++                            +|++....+..++.+++|+.|++++|.
T Consensus       126 ~n~l~~-l~~~~~~~l~~L~~L~L~----------------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          126 RNDLSS-LPRGIFHNTPKLTTLSMS----------------------------NNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECC----------------------------SSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCccCc-CCHHHhcCCCCCcEEECC----------------------------CCccCccChhhccCCCCCCEEECCCCc
Confidence            665553 333244555555555544                            455544445556666666666666666


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                      +++....   .+ ++|+.+++++|.+.+..    ....++.+++++|.+........++|+.|++++|.+.+.   ....
T Consensus       177 l~~~~~~---~l-~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~---~~l~  245 (390)
T 3o6n_A          177 LTHVDLS---LI-PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLL  245 (390)
T ss_dssp             CSBCCGG---GC-TTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC---GGGG
T ss_pred             CCccccc---cc-cccceeecccccccccC----CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc---HHHc
Confidence            6543211   11 35666666666554211    112344444444444333222333455555555544421   1123


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|++. ..+..+..+++|++|
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  323 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence            4445555555555554444444444555555555555444 22333334444555555544444 233334444444444


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS  369 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  369 (497)
                      ++++|.+.. .+  +..+++|+.|++++|++.
T Consensus       324 ~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          324 YLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             ECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred             ECCCCccce-eC--chhhccCCEEEcCCCCcc
Confidence            444444432 11  333444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.5e-33  Score=274.51  Aligned_cols=357  Identities=20%  Similarity=0.170  Sum_probs=219.4

Q ss_pred             CcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChh
Q 037822           29 LNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITET  108 (497)
Q Consensus        29 i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  108 (497)
                      .....+..++.+++|++|++++|.+.+ +| .+..+++|++|++++|.+++. +  +..+++|++|++++|.+++.    
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----  100 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----  100 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----
T ss_pred             cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----
Confidence            333445578889999999999999985 45 689999999999999999853 3  88899999999999998874    


Q ss_pred             hhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhh
Q 037822          109 HFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ  188 (497)
Q Consensus       109 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  188 (497)
                      .+.++++|++|++++|.+.     .++  +..+++|++|++++|++...   .++.+++|+.|++++|...+..+  +..
T Consensus       101 ~~~~l~~L~~L~L~~N~l~-----~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~~  168 (457)
T 3bz5_A          101 DVTPLTKLTYLNCDTNKLT-----KLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTP  168 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCS-----CCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CTT
T ss_pred             ecCCCCcCCEEECCCCcCC-----eec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--ccc
Confidence            2777888888888876433     111  44555566666665555432   14455555555555553222211  111


Q ss_pred             cccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcc
Q 037822          189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDIS  268 (497)
Q Consensus       189 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (497)
                      + ++|++|++++|                       .+++......++|+.|++++|.+.+. +   +..+++|++|+++
T Consensus       169 l-~~L~~L~ls~n-----------------------~l~~l~l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls  220 (457)
T 3bz5_A          169 Q-TQLTTLDCSFN-----------------------KITELDVSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCS  220 (457)
T ss_dssp             C-TTCCEEECCSS-----------------------CCCCCCCTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECC
T ss_pred             C-CcCCEEECCCC-----------------------ccceeccccCCCCCEEECcCCcCCee-c---cccCCCCCEEECc
Confidence            1 23333333333                       33322212233455555555554422 1   1244555555555


Q ss_pred             cCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeC
Q 037822          269 FNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV  348 (497)
Q Consensus       269 ~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~  348 (497)
                      +|.+.+ .|  +..+++|++|++++|.+++. +  ++.+++|+.|++++|              +|++|++++|.+.+.+
T Consensus       221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred             CCcccc-cC--ccccCCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence            555543 22  44445555555555554422 1  233444555544433              3344555555544333


Q ss_pred             CcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCC
Q 037822          349 PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF  428 (497)
Q Consensus       349 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l  428 (497)
                      |  +..+++|+.|++++|...+.+|.    ..++|+.|++             ..+++|++|++++|++++.   .+.++
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l  338 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDL-------------SQNPKLVYLYLNNTELTEL---DVSHN  338 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC---CCTTC
T ss_pred             c--ccccccCCEEECCCCcccceecc----CCCcceEech-------------hhcccCCEEECCCCccccc---ccccC
Confidence            3  35567777777777765555543    1344554444             4457999999999999974   38999


Q ss_pred             CCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          429 SGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       429 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      ++|+.|++++|++.                .++.|+.|++++|.+++.     ..+..|..+++++|++
T Consensus       339 ~~L~~L~l~~N~l~----------------~l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l  386 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQ----------------DFSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL  386 (457)
T ss_dssp             TTCSEEECCSSCCC----------------BCTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred             CcCcEEECCCCCCC----------------CccccccccccCCcEEec-----ceeeecCccccccCcE
Confidence            99999999999984                346778889999999865     3567788889988863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.2e-31  Score=255.66  Aligned_cols=150  Identities=25%  Similarity=0.373  Sum_probs=88.2

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .++.|+.+++++|.+.+..+  +..+++|++|++++|.+.. .+. +..+++|++|++++|.+++.  ..+..+++|++|
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L  270 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML  270 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence            45566666666666553322  5556666666666666652 222 56666666666666666532  345666666666


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL  417 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i  417 (497)
                      ++++|.+.+.  ..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|++++..+  +..+++|++|++++|++
T Consensus       271 ~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          271 NVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             EccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            6666666532  34566667777777777666444443333 6667777777776664322  56666677777776665


Q ss_pred             c
Q 037822          418 S  418 (497)
Q Consensus       418 ~  418 (497)
                      +
T Consensus       346 ~  346 (347)
T 4fmz_A          346 K  346 (347)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4e-32  Score=277.27  Aligned_cols=308  Identities=21%  Similarity=0.220  Sum_probs=165.5

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +++.++++++.+....+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            44455555554444443444445555555555555444444444555555555555555444444444455555555555


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+++ ++...|.+                            +++|++|++++|.+....+..++.+++|+.|++++|.
T Consensus       132 ~n~l~~-l~~~~~~~----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          132 RNDLSS-LPRGIFHN----------------------------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             SSCCCC-CCTTTTTT----------------------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCCC-CCHHHhcc----------------------------CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            554443 22223344                            4455555555555555556667777777777777777


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                      +.+..+..   + ++|+.+++++|.+.+..    ....++.+++++|.+....+..+++|+.|++++|.+.+.   ..+.
T Consensus       183 l~~~~~~~---l-~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~---~~l~  251 (597)
T 3oja_B          183 LTHVDLSL---I-PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLL  251 (597)
T ss_dssp             CSBCCGGG---C-TTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC---GGGG
T ss_pred             CCCcChhh---h-hhhhhhhcccCcccccc----CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC---hhhc
Confidence            66442221   2 46777777776655321    123455566666555544444445666666666665531   2224


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .++.|+.|++++|.+.+..|..+..+++|++|++++|.+.+ ++..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  329 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence            56666666666666665555666666666666666666552 3444455566666666666665 344445556666666


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG  370 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  370 (497)
                      ++++|.+.+.   .+..+++|+.|++++|++.+
T Consensus       330 ~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          330 YLDHNSIVTL---KLSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             ECCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred             ECCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence            6666665422   14445566666666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.6e-32  Score=261.22  Aligned_cols=312  Identities=21%  Similarity=0.175  Sum_probs=234.4

Q ss_pred             CCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCce
Q 037822           39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE  118 (497)
Q Consensus        39 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  118 (497)
                      .+.++++|+++++.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+. .+.++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCE
Confidence            457889999999888755555578888999999999988877777888899999999999888764333 5666776666


Q ss_pred             EeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEc
Q 037822          119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV  198 (497)
Q Consensus       119 L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  198 (497)
                      |++++                            |++....+..++.+++|+.|++++|.+.+..+..+..+ ++|++|++
T Consensus       122 L~L~~----------------------------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l  172 (390)
T 3o6n_A          122 LVLER----------------------------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQL  172 (390)
T ss_dssp             EECCS----------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEEC
T ss_pred             EECCC----------------------------CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEEC
Confidence            66655                            44444444456888999999999999887666666555 57888888


Q ss_pred             ccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc
Q 037822          199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK  278 (497)
Q Consensus       199 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  278 (497)
                      ++|.+++..                       ...+++++.+++++|.+.+.      ...+.|++|++++|.+..... 
T Consensus       173 ~~n~l~~~~-----------------------~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~~~-  222 (390)
T 3o6n_A          173 SSNRLTHVD-----------------------LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVRG-  222 (390)
T ss_dssp             CSSCCSBCC-----------------------GGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEEEC-
T ss_pred             CCCcCCccc-----------------------cccccccceeeccccccccc------CCCCcceEEECCCCeeeeccc-
Confidence            888776431                       12233555666666555421      234578888888888764422 


Q ss_pred             cccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCC
Q 037822          279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM  358 (497)
Q Consensus       279 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  358 (497)
                        ...++|++|++++|.+.+  ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ++..+..+++|
T Consensus       223 --~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L  297 (390)
T 3o6n_A          223 --PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL  297 (390)
T ss_dssp             --CCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred             --cccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCC
Confidence              224788888888888873  2567888899999999999887778888889999999999998874 45556778999


Q ss_pred             CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822          359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      ++|++++|.+. .+|..+.. +++|+.|++++|+++. ++  +..+++|+.|++++|++...
T Consensus       298 ~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          298 KVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CEEECCCCcce-ecCccccc-cCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence            99999999988 67766655 8899999999999884 33  67788999999999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.8e-31  Score=253.22  Aligned_cols=171  Identities=23%  Similarity=0.351  Sum_probs=121.4

Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      ..+++|++|++++|.+.+..+  +..+++|+.+++++|.+....+  +..+++|++|++++|.+++..+  +..+++|++
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~  247 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW  247 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCE
Confidence            356777788888777764332  7778888888888888774332  7778888888888888874433  777888888


Q ss_pred             EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |++++|.+++ . ..+..+++|+.|++++|.+. .++.  +..+++|+.|++++|++++..+..+..+++|++|++++|+
T Consensus       248 L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          248 LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             EECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             EECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CChh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            8888888763 2 45777888888888888877 3432  3347888888888888876666677778888888888888


Q ss_pred             CcCCCCccccCCCCCcccCCCCCc
Q 037822          417 LSGIIPPCVGNFSGMKVEPPDSVK  440 (497)
Q Consensus       417 i~~~~~~~l~~l~~L~~L~l~~~~  440 (497)
                      +++..|  +..+++|+.|++++|+
T Consensus       323 l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          323 ITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             CCCCGG--GGGCTTCSEESSSCC-
T ss_pred             cccccC--hhhhhccceeehhhhc
Confidence            875544  5555555444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=6.7e-31  Score=268.24  Aligned_cols=312  Identities=21%  Similarity=0.173  Sum_probs=231.9

Q ss_pred             CCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCce
Q 037822           39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE  118 (497)
Q Consensus        39 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  118 (497)
                      .+.+++++++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+ ..|.++++|+.
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCCCCCE
Confidence            35788888888888876666667888888888888888887777788888888888888888876433 35666666666


Q ss_pred             EeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEc
Q 037822          119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV  198 (497)
Q Consensus       119 L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  198 (497)
                      |++++                            |.+....+..|+.+++|+.|++++|.+.+..|..+..+ ++|+.|++
T Consensus       128 L~L~~----------------------------n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L  178 (597)
T 3oja_B          128 LVLER----------------------------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQL  178 (597)
T ss_dssp             EECCS----------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEEC
T ss_pred             EEeeC----------------------------CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEEC
Confidence            66655                            45554445557889999999999999987777767665 58888888


Q ss_pred             ccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc
Q 037822          199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK  278 (497)
Q Consensus       199 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  278 (497)
                      ++|.+.+..                       ...+++|+.+++++|.+.+.      ...+.|+.|++++|.+....+.
T Consensus       179 ~~N~l~~~~-----------------------~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          179 SSNRLTHVD-----------------------LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             TTSCCSBCC-----------------------GGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCCEEECS
T ss_pred             cCCCCCCcC-----------------------hhhhhhhhhhhcccCccccc------cCCchhheeeccCCcccccccc
Confidence            888776432                       12233555555555555421      2345677888888777643322


Q ss_pred             cccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCC
Q 037822          279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM  358 (497)
Q Consensus       279 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  358 (497)
                      .   .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ +|..+..+++|
T Consensus       230 ~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L  303 (597)
T 3oja_B          230 V---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL  303 (597)
T ss_dssp             C---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred             c---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC
Confidence            2   3678888888888773  4667888888888888888887778888888888888888888874 45566778899


Q ss_pred             CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822          359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      +.|++++|.+. .+|..+.. +++|+.|++++|.+++. +  +..+++|+.|++++|++.+.
T Consensus       304 ~~L~Ls~N~l~-~i~~~~~~-l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          304 KVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             cEEECCCCCCC-ccCccccc-CCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            99999999888 77776654 88999999999988743 3  67788899999999988644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=4.2e-35  Score=291.04  Aligned_cols=362  Identities=18%  Similarity=0.188  Sum_probs=215.1

Q ss_pred             CCccEEEcCCCCCcccCCcc-ccCCCCCCEEECCCCcccc----cCCccccCCCCCCEEECcCCcCcccCCccC-CCCC-
Q 037822           17 SLLEKLELGFNQLNGDLPSS-LGYLKNLRYLELWHNSFVG----SIPPSIGNLTFLKELYLSSNQMNGKFPENF-GQLS-   89 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~-~~~l~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~-   89 (497)
                      ++|++|+++++++++..... +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+++..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            48999999999998654443 7889999999999999874    356778889999999999999876444333 2233 


Q ss_pred             ---CCCEEEcCCCccccc----cChhhhhcCCCCceEeccCccccceeeecccCCCC-CCccccEEEccCCcCCCCC---
Q 037822           90 ---AVEVLDLSENQWEGI----ITETHFRNLSNLKELALNKQSENISLIFNISSHWI-PPFKLTFINIRSCQLGPKF---  158 (497)
Q Consensus        90 ---~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~---  158 (497)
                         +|++|++++|.+++.    ++ ..+..+++|++|++++|.+.......+...+. ..++|++|++++|++....   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence               799999999998742    23 36788889999999886544222222222211 2345666666666655422   


Q ss_pred             -CccccCCCCccEEEeeccccccccCchhhhc----ccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCC
Q 037822          159 -PTWLRNQTELTTLVLNNVRISDTIPDWFWQL----DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW  233 (497)
Q Consensus       159 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  233 (497)
                       +..+..+++|++|++++|.+.+..+..+...    .++|++|++++|.+++....                        
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------------  217 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR------------------------  217 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH------------------------
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH------------------------
Confidence             3444555666666666666554333333221    12344444444433211000                        


Q ss_pred             ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc-----cccCcCCccEEEeecceeecc----cCccc
Q 037822          234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK-----SICNLQQLLTLVISNNNLSGE----IPRLW  304 (497)
Q Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-----~l~~l~~L~~L~l~~n~~~~~----~~~~~  304 (497)
                                      .++..+ ..+++|++|++++|.+.+....     .+..+++|++|++++|.++..    ++..+
T Consensus       218 ----------------~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  280 (461)
T 1z7x_W          218 ----------------DLCGIV-ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL  280 (461)
T ss_dssp             ----------------HHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             ----------------HHHHHH-HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence                            011111 2456666666666665533211     122356666666666666532    34445


Q ss_pred             ccCCCCCEEECccCcccccCCccccc-----ccCCcEEEeecceeeee----CCcccccCCCCCEEecCCCcCcccCChh
Q 037822          305 SNISSLYILDMSNNSLSGEIPESIGS-----LLSVRFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPAW  375 (497)
Q Consensus       305 ~~~~~L~~L~l~~n~i~~~~~~~l~~-----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~  375 (497)
                      ..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..
T Consensus       281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  360 (461)
T 1z7x_W          281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  360 (461)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence            55666777777777665433332222     24667777776666533    2344556677777777777766544443


Q ss_pred             Hhhh----CCCCCEEEccCccccc----CCCcccCCCCCCCEEEccCCcCcCC
Q 037822          376 IGES----MPSLSILRLRSNYFNG----TIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       376 ~~~~----~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      +...    .++|+.|++++|++++    .++..+..+++|++|++++|++++.
T Consensus       361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            3332    3467777777776664    4455566667777777777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-34  Score=287.44  Aligned_cols=392  Identities=15%  Similarity=0.117  Sum_probs=233.6

Q ss_pred             CCCCEEECCCCcccccCCc-cccCCCCCCEEECcCCcCcc----cCCccCCCCCCCCEEEcCCCccccccChhhhhcCC-
Q 037822           41 KNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQMNG----KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS-  114 (497)
Q Consensus        41 ~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-  114 (497)
                      ++|++|+++++.++..... .+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+......+..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4678889988887654333 36778889999999888774    23556777888888888888876543332333344 


Q ss_pred             ---CCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhc--
Q 037822          115 ---NLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQL--  189 (497)
Q Consensus       115 ---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--  189 (497)
                         +|++|++++|.+......                        .++..+..+++|++|++++|.+.+..+..+...  
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~------------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCG------------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHH------------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             CCCceeEEEccCCCCCHHHHH------------------------HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence               455555555432211111                        235556677777777777777665444433321  


Q ss_pred             --ccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhh----cCCCCcc
Q 037822          190 --DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG----QKIPFLT  263 (497)
Q Consensus       190 --~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~  263 (497)
                        .++|++|++++|.+++.....+..                .....++|+.|++++|.+.+..+..+.    ...+.|+
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~----------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLAS----------------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHH----------------HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHH----------------HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence              124666666666655422111100                000012444444444444332222222    2356888


Q ss_pred             EEEcccCcceec----ccccccCcCCccEEEeecceeeccc-----CcccccCCCCCEEECccCccccc----CCccccc
Q 037822          264 DLDISFNSLNGS----VSKSICNLQQLLTLVISNNNLSGEI-----PRLWSNISSLYILDMSNNSLSGE----IPESIGS  330 (497)
Q Consensus       264 ~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~  330 (497)
                      +|++++|.+++.    .+..+..+++|++|++++|.+....     +..+..+++|++|++++|.++..    .+..+..
T Consensus       203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  282 (461)
T 1z7x_W          203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA  282 (461)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence            888888888753    3556667788888888888876432     22223577888888888888753    3455666


Q ss_pred             ccCCcEEEeecceeeeeCCcccc-----cCCCCCEEecCCCcCcccC----ChhHhhhCCCCCEEEccCcccccCCCccc
Q 037822          331 LLSVRFLILCNNHISGEVPPSLK-----NCSMMDSLDLGDNQLSGNI----PAWIGESMPSLSILRLRSNYFNGTIPPEL  401 (497)
Q Consensus       331 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~i~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  401 (497)
                      +++|++|++++|.+.+..+..+.     ..++|+.|++++|.+++..    +..+. .+++|+.|++++|.+++..+..+
T Consensus       283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l  361 (461)
T 1z7x_W          283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVREL  361 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHH
T ss_pred             CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh-hCCCccEEEccCCccccccHHHH
Confidence            78888888888887543332222     2368888888888877542    23333 36888888888888775433322


Q ss_pred             C----C-CCCCCEEEccCCcCcC----CCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCc
Q 037822          402 C----K-LPALHILDLSHNNLSG----IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNN  472 (497)
Q Consensus       402 ~----~-l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  472 (497)
                      .    . .++|++|++++|++++    .+|..+..+++|+.|++++|++.......+..   ........|+.|++..+.
T Consensus       362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~---~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE---SVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH---HHTSTTCCCCEEECTTCC
T ss_pred             HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH---HhccCCcchhheeecccc
Confidence            2    1 5688888888888875    55666777777777777777664321111000   001122356666666665


Q ss_pred             cccc
Q 037822          473 LSGE  476 (497)
Q Consensus       473 ~~~~  476 (497)
                      +...
T Consensus       439 ~~~~  442 (461)
T 1z7x_W          439 WSEE  442 (461)
T ss_dssp             CCHH
T ss_pred             cCHH
Confidence            5433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1e-30  Score=244.81  Aligned_cols=248  Identities=29%  Similarity=0.418  Sum_probs=215.6

Q ss_pred             ccceEecccCcccc--cCChhhhcCCCCccEEEccc-CcceecccccccCcCCccEEEeecceeecccCcccccCCCCCE
Q 037822          236 NVTKLYLRDNSFSG--PIPRDFGQKIPFLTDLDISF-NSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYI  312 (497)
Q Consensus       236 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  312 (497)
                      +++.|+++++.+.+  .+|..+ ..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            68888888888887  677665 5789999999995 8888888888999999999999999998888888999999999


Q ss_pred             EECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCC-CCCEEecCCCcCcccCChhHhhhCCCCCEEEccCc
Q 037822          313 LDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCS-MMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN  391 (497)
Q Consensus       313 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n  391 (497)
                      |++++|.+.+..+..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+.+|..+.. ++ |+.|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcCC
Confidence            99999999888888899999999999999999888888888888 8999999999998888877765 65 999999999


Q ss_pred             ccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCC
Q 037822          392 YFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSN  471 (497)
Q Consensus       392 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  471 (497)
                      .+++..+..+..+++|+.|++++|++++..|. +..+++|+.|++++|++..        ..+..+..+++|+.|++++|
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~--------~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG--------TLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE--------CCCGGGGGCTTCCEEECCSS
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC--------cCChHHhcCcCCCEEECcCC
Confidence            99888888889999999999999999866554 8888999999999998843        34455678899999999999


Q ss_pred             cccccCChhhhccCCCCeEECCCCC
Q 037822          472 NLSGEMPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       472 ~~~~~~~~~l~~l~~L~~l~l~~n~  496 (497)
                      .+++.+|.. ..+++|+.+++++|+
T Consensus       279 ~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccccCCCC-ccccccChHHhcCCC
Confidence            999888876 889999999999997

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=7.5e-30  Score=241.49  Aligned_cols=127  Identities=17%  Similarity=0.193  Sum_probs=69.5

Q ss_pred             CCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEec
Q 037822           42 NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL  121 (497)
Q Consensus        42 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  121 (497)
                      ++++++++++.+. .+|..+.  ++|++|++++|.++...+..+.++++|++|++++|.+++..+. .+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence            4555555555554 3443332  4555555555555544444555555555555555555543222 4555555555555


Q ss_pred             cCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccc
Q 037822          122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS  179 (497)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  179 (497)
                      ++|.+.     .++..+.  ++|++|++++|++....+..+..+++|+.|++++|.+.
T Consensus       110 ~~n~l~-----~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          110 SKNHLV-----EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CSSCCC-----SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCcCC-----ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            553221     2222222  36666666667766555566777777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5e-29  Score=235.69  Aligned_cols=274  Identities=20%  Similarity=0.241  Sum_probs=181.0

Q ss_pred             cccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEcc
Q 037822          143 KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLS  222 (497)
Q Consensus       143 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~  222 (497)
                      .+++|++++|.+....+..++.+++|+.|++++|.+.+..|..+..+ ++|++|++++|.+.                  
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~------------------  113 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKNQLK------------------  113 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCS------------------
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC-CCCCEEECCCCcCC------------------
Confidence            34444444555554444456666666666666666654445444433 24444444444333                  


Q ss_pred             CCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeec--cc
Q 037822          223 SNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG--EI  300 (497)
Q Consensus       223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~  300 (497)
                                                 .+|..+   .+.|++|++++|.+.+..+..+..+++|++|++++|.+..  ..
T Consensus       114 ---------------------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  163 (330)
T 1xku_A          114 ---------------------------ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE  163 (330)
T ss_dssp             ---------------------------BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred             ---------------------------ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence                                       222222   2456666666666665555566667777777777776642  45


Q ss_pred             CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhC
Q 037822          301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM  380 (497)
Q Consensus       301 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  380 (497)
                      +..+..+++|++|++++|.++. .+..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l  239 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NT  239 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GS
T ss_pred             hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CC
Confidence            5667777788888888887763 343332  6888888888888777777888888888888888888754444444 48


Q ss_pred             CCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccc
Q 037822          381 PSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL  460 (497)
Q Consensus       381 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  460 (497)
                      ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|......                          ...
T Consensus       240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~--------------------------~~~  292 (330)
T 1xku_A          240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN--------------------------TKK  292 (330)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC--------------------------TTS
T ss_pred             CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc--------------------------ccc
Confidence            89999999999888 777788889999999999999987666655433211                          224


Q ss_pred             cccCEEEccCCcccc--cCChhhhccCCCCeEECCCCC
Q 037822          461 YLVNLMDLSSNNLSG--EMPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       461 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n~  496 (497)
                      +.++.|++++|.+..  ..|..|..++.++.+++++|+
T Consensus       293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            567889999998853  556788899999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.7e-29  Score=235.28  Aligned_cols=244  Identities=20%  Similarity=0.249  Sum_probs=118.5

Q ss_pred             CCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEec
Q 037822           42 NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL  121 (497)
Q Consensus        42 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  121 (497)
                      ++++++++++.+. .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..+. .+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEEC
Confidence            3444444444443 2333221  3444444444444433333444444444444444444432222 3444444444444


Q ss_pred             cCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecccccc--ccCchhhhcccCccEEEcc
Q 037822          122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD--TIPDWFWQLDLTLDELDVA  199 (497)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~  199 (497)
                      ++|.+.     .++..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+ ++|++|+++
T Consensus       108 s~n~l~-----~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~  179 (330)
T 1xku_A          108 SKNQLK-----ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIA  179 (330)
T ss_dssp             CSSCCS-----BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECC
T ss_pred             CCCcCC-----ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECC
Confidence            443211     1111111  356666666666665555667777777777777776642  223333322 234444333


Q ss_pred             cccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceeccccc
Q 037822          200 YNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS  279 (497)
Q Consensus       200 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  279 (497)
                      +|.+.                                             .+|..+   .+.|++|++++|.+.+..+..
T Consensus       180 ~n~l~---------------------------------------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~  211 (330)
T 1xku_A          180 DTNIT---------------------------------------------TIPQGL---PPSLTELHLDGNKITKVDAAS  211 (330)
T ss_dssp             SSCCC---------------------------------------------SCCSSC---CTTCSEEECTTSCCCEECTGG
T ss_pred             CCccc---------------------------------------------cCCccc---cccCCEEECCCCcCCccCHHH
Confidence            33322                                             122221   245555666665555555555


Q ss_pred             ccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeee
Q 037822          280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISG  346 (497)
Q Consensus       280 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~  346 (497)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ ..|..+..+++|++|++++|.+++
T Consensus       212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            555566666666666555444445555555666666665555 444445555555555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.9e-29  Score=235.86  Aligned_cols=205  Identities=20%  Similarity=0.229  Sum_probs=152.3

Q ss_pred             CCccEEEcccCcceecccccccCcCCccEEEeecceeec--ccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG--EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       260 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+++ .+..+.  ++|++|
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L  198 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNEL  198 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCC
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEE
Confidence            567777777777765555567777777888887777752  455666666 88888888888874 443332  688888


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL  417 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i  417 (497)
                      ++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus       199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            8998888866667888889999999999988844444444 4889999999999988 7787888899999999999999


Q ss_pred             cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccc--ccCChhhhccCCCCeEECCCC
Q 037822          418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS--GEMPVELTRLIHLGTLNLSRN  495 (497)
Q Consensus       418 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~l~l~~n  495 (497)
                      ++..+..+......                          ...++|+.|++++|++.  +..|..|..++.|+.+++++|
T Consensus       277 ~~~~~~~~~~~~~~--------------------------~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          277 TKVGVNDFCPVGFG--------------------------VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CBCCTTSSSCSSCC--------------------------SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CccChhHccccccc--------------------------cccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            87766666543211                          12466788999999886  567788999999999999988


Q ss_pred             C
Q 037822          496 H  496 (497)
Q Consensus       496 ~  496 (497)
                      .
T Consensus       331 ~  331 (332)
T 2ft3_A          331 K  331 (332)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.1e-29  Score=234.70  Aligned_cols=248  Identities=29%  Similarity=0.445  Sum_probs=148.8

Q ss_pred             cccEEEccCCcCCC--CCCccccCCCCccEEEeec-cccccccCchhhhcccCccEEEcccccccccCCccccccCCCEE
Q 037822          143 KLTFINIRSCQLGP--KFPTWLRNQTELTTLVLNN-VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATV  219 (497)
Q Consensus       143 ~L~~l~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l  219 (497)
                      ++++|+++++.+..  .+|..++.+++|+.|++++ |.+.+..|..+..+ ++|++|++++|.+.+              
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEE--------------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCC--------------
Confidence            56666666666665  5666677777777777763 66665556555444 244444444444332              


Q ss_pred             EccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecc
Q 037822          220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE  299 (497)
Q Consensus       220 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  299 (497)
                                                    .+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus       116 ------------------------------~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  164 (313)
T 1ogq_A          116 ------------------------------AIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             ------------------------------ECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             ------------------------------cCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc
Confidence                                          233322 2455666666666666555556666666666666666666655


Q ss_pred             cCcccccCC-CCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822          300 IPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE  378 (497)
Q Consensus       300 ~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  378 (497)
                      .|..+..++ +|++|++++|.+.+..+..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. + .
T Consensus       165 ~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~  241 (313)
T 1ogq_A          165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-G  241 (313)
T ss_dssp             CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-C
T ss_pred             CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-c
Confidence            666666665 666666666666655666565554 66666666666655566666666666666666666544333 2 2


Q ss_pred             hCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCc
Q 037822          379 SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVK  440 (497)
Q Consensus       379 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~  440 (497)
                      .+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus       242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            3566666666666666666666666666666666666666655554 555555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.2e-30  Score=267.19  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             cccCCCCCCEEECCCCccc---ccCCcccc------------CCCCCCEEECcCCcCcccCCccCCC-CC-CCCEEEcCC
Q 037822           36 SLGYLKNLRYLELWHNSFV---GSIPPSIG------------NLTFLKELYLSSNQMNGKFPENFGQ-LS-AVEVLDLSE   98 (497)
Q Consensus        36 ~~~~l~~L~~L~l~~~~l~---~~~~~~l~------------~l~~L~~L~l~~n~~~~~~~~~~~~-l~-~L~~L~l~~   98 (497)
                      .+..+++|++|+++++...   +..|..+.            .+++|++|++++|.+++..+..+.. ++ +|++|++++
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            4455666777776664321   11221111            5666777777766665544444433 23 377777766


Q ss_pred             Cc-cccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC----CCCccccCCCCccEEEe
Q 037822           99 NQ-WEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP----KFPTWLRNQTELTTLVL  173 (497)
Q Consensus        99 n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~----~~~~~l~~l~~L~~L~l  173 (497)
                      |. +..........++++|++|++++|.+.......+......+++|++|+++++.+..    .++..+..+++|+.|++
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L  227 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV  227 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence            65 21111111334566666666666432211111122222344566666666665541    22333445666666666


Q ss_pred             eccccccccCchhhhcccCccEEEccc
Q 037822          174 NNVRISDTIPDWFWQLDLTLDELDVAY  200 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~  200 (497)
                      ++|.+.+ .+..+... ++|++++++.
T Consensus       228 ~~~~~~~-l~~~~~~~-~~L~~L~l~~  252 (592)
T 3ogk_B          228 GDFEILE-LVGFFKAA-ANLEEFCGGS  252 (592)
T ss_dssp             SSCBGGG-GHHHHHHC-TTCCEEEECB
T ss_pred             cCccHHH-HHHHHhhh-hHHHhhcccc
Confidence            6666553 33334333 4666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.9e-31  Score=269.09  Aligned_cols=414  Identities=12%  Similarity=0.032  Sum_probs=250.7

Q ss_pred             CCCccEEEcCCCCCc---ccCCccc------------cCCCCCCEEECCCCcccccCCccccC-CCC-CCEEECcCCc-C
Q 037822           16 SSLLEKLELGFNQLN---GDLPSSL------------GYLKNLRYLELWHNSFVGSIPPSIGN-LTF-LKELYLSSNQ-M   77 (497)
Q Consensus        16 ~~~L~~L~l~~~~i~---~~~~~~~------------~~l~~L~~L~l~~~~l~~~~~~~l~~-l~~-L~~L~l~~n~-~   77 (497)
                      +++|++|+++++...   +..|..+            ..+++|++|++++|.+.+..+..+.. +++ |++|++++|. +
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            448999999886431   1222222            27899999999999887655555655 344 9999999987 2


Q ss_pred             cc-cCCccCCCCCCCCEEEcCCCcccccc---ChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc
Q 037822           78 NG-KFPENFGQLSAVEVLDLSENQWEGII---TETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ  153 (497)
Q Consensus        78 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  153 (497)
                      +. ..+.....+++|++|++++|.+.+.-   .......+++|++|+++++.+.......++..+..+++|++|++++|.
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            22 12222347899999999999876541   112567899999999998654311223444455677899999999988


Q ss_pred             CCCCCCccccCCCCccEEEeeccccc---cccCchhhhcccCccEEEcccccccccCCccc-cccCCCEEEccCCccccC
Q 037822          154 LGPKFPTWLRNQTELTTLVLNNVRIS---DTIPDWFWQLDLTLDELDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGP  229 (497)
Q Consensus       154 ~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~  229 (497)
                      +.. .+..+..+++|+.|+++.+...   ...+..+... ++|+.++++++... ..+..+ .+++|+.+++++|.+.+.
T Consensus       232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~  308 (592)
T 3ogk_B          232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETE  308 (592)
T ss_dssp             GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred             HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHH
Confidence            764 6678889999999999864332   1122223222 57888888775433 333333 466777777777765432


Q ss_pred             CC----CCccccceEecccCcccccCChhhhcCCCCccEEEccc-----------Ccceeccccc-ccCcCCccEEEeec
Q 037822          230 LP----LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISF-----------NSLNGSVSKS-ICNLQQLLTLVISN  293 (497)
Q Consensus       230 ~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~i~~~~~~~-l~~l~~L~~L~l~~  293 (497)
                      ..    ..+++|+.|+++ +.+.+.....+...+++|++|++++           +.+++..... ...+++|++|+++.
T Consensus       309 ~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  387 (592)
T 3ogk_B          309 DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV  387 (592)
T ss_dssp             HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred             HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence            22    334577777776 3333333334445567777777773           3444322222 33467777777766


Q ss_pred             ceeecccCccccc-CCCCCEEECc----cCccccc-----CCcccccccCCcEEEeecce--eeeeCCccc-ccCCCCCE
Q 037822          294 NNLSGEIPRLWSN-ISSLYILDMS----NNSLSGE-----IPESIGSLLSVRFLILCNNH--ISGEVPPSL-KNCSMMDS  360 (497)
Q Consensus       294 n~~~~~~~~~~~~-~~~L~~L~l~----~n~i~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~  360 (497)
                      +.+++..+..+.. +++|+.|+++    .+.+++.     .+..+..+++|++|++++|.  +++..+..+ ..+++|+.
T Consensus       388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~  467 (592)
T 3ogk_B          388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW  467 (592)
T ss_dssp             SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred             CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence            6665444444443 6677777775    4455432     11224556777777776543  332222222 23667777


Q ss_pred             EecCCCcCcccCChhHhhhCCCCCEEEccCcccccC-CCcccCCCCCCCEEEccCCcCcCCCCccc-cCCCCCcc
Q 037822          361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT-IPPELCKLPALHILDLSHNNLSGIIPPCV-GNFSGMKV  433 (497)
Q Consensus       361 L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~  433 (497)
                      |++++|.+++.....+..++++|+.|++++|.+++. .+..+..+++|++|++++|++++.....+ ..++.++.
T Consensus       468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~  542 (592)
T 3ogk_B          468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI  542 (592)
T ss_dssp             EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred             eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence            777777766544344444567777777777776532 22233456777777777777665433333 23444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.8e-27  Score=222.58  Aligned_cols=247  Identities=19%  Similarity=0.221  Sum_probs=172.2

Q ss_pred             EEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceec--ccccccCcCCccEEEeecce
Q 037822          218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS--VSKSICNLQQLLTLVISNNN  295 (497)
Q Consensus       218 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n~  295 (497)
                      .++++++.++..+...++++++|++++|.+. .++...+..+++|++|++++|.+...  .+..+..+++|++|++++|.
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            4555555555444444457888888888776 56666556788888888888887633  24556667888888888888


Q ss_pred             eecccCcccccCCCCCEEECccCcccccCC-cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcc-cCC
Q 037822          296 LSGEIPRLWSNISSLYILDMSNNSLSGEIP-ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG-NIP  373 (497)
Q Consensus       296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~  373 (497)
                      +. ..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|
T Consensus        90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            77 456667778888888888888875544 467777888888888888876677777778888888888887765 344


Q ss_pred             hhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcc
Q 037822          374 AWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSE  453 (497)
Q Consensus       374 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  453 (497)
                      ..+.. +++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++....+       
T Consensus       169 ~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------  240 (306)
T 2z66_A          169 DIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-------  240 (306)
T ss_dssp             SCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-------
T ss_pred             hHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-------
Confidence            44443 7788888888888876666777778888888888888876666667777777776666666543322       


Q ss_pred             ccccccc-cccCEEEccCCcccc
Q 037822          454 YVFYTTL-YLVNLMDLSSNNLSG  475 (497)
Q Consensus       454 ~~~~~~~-~~L~~L~l~~n~~~~  475 (497)
                       ..+..+ ++|+.|++++|.++.
T Consensus       241 -~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          241 -QELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             -SSCCCCCTTCCEEECTTCCEEC
T ss_pred             -HHHHhhhccCCEEEccCCCeec
Confidence             223334 366777777776653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=232.28  Aligned_cols=245  Identities=22%  Similarity=0.202  Sum_probs=147.1

Q ss_pred             eEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccC
Q 037822          239 KLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNN  318 (497)
Q Consensus       239 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  318 (497)
                      .++..+..+. .+|..+   .+.++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus        47 ~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            3444444443 444432   345566666666665555555666666666666666665444455666666666666666


Q ss_pred             cccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCC
Q 037822          319 SLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP  398 (497)
Q Consensus       319 ~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  398 (497)
                      .++...+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++...+..+++|+.|++++|+++ .+|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence            6654444456666666666666666654445556666666666666643333454444444666666666666665 333


Q ss_pred             cccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCC
Q 037822          399 PELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP  478 (497)
Q Consensus       399 ~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  478 (497)
                       .+..+++|++|++++|++++..|..|.++++|+.|++++|++...        .+..+..+++|+.|+|++|.+++..+
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI--------ERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE--------ChhhhcCCCCCCEEECCCCCCCccCh
Confidence             355666666666666666665566666666666666666665322        22334556777778888888776666


Q ss_pred             hhhhccCCCCeEECCCCCC
Q 037822          479 VELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       479 ~~l~~l~~L~~l~l~~n~i  497 (497)
                      ..|..+++|++|+|++|++
T Consensus       273 ~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTTSSCTTCCEEECCSSCE
T ss_pred             hHhccccCCCEEEcCCCCc
Confidence            6777778888888887763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.5e-27  Score=232.79  Aligned_cols=246  Identities=22%  Similarity=0.194  Sum_probs=178.5

Q ss_pred             ceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822          238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN  317 (497)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  317 (497)
                      ..++.++..++ .+|..+   .+.+++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            44555555554 455433   35677777777777776677777777777787777777766667777777788888888


Q ss_pred             CcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC
Q 037822          318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI  397 (497)
Q Consensus       318 n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  397 (497)
                      |.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.++...+..+++|+.|++++|++++ +
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence            777766666677777888888888777765566777778888888877544446665555557788888888887773 3


Q ss_pred             CcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccC
Q 037822          398 PPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM  477 (497)
Q Consensus       398 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  477 (497)
                      + .+..+++|++|++++|++.+..|..|.++++|+.|++++|.+...        .+..+..+++|+.|+|++|.+++..
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI--------ERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE--------CHHHhcCCCCCCEEECCCCcCCccC
Confidence            3 467777888888888888777777788888888888888776432        2334567788888899988888777


Q ss_pred             ChhhhccCCCCeEECCCCCC
Q 037822          478 PVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       478 ~~~l~~l~~L~~l~l~~n~i  497 (497)
                      +..|..+++|++|+|++|++
T Consensus       283 ~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          283 HDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTSSTTCTTCCEEECCSSCE
T ss_pred             hHHhccccCCCEEEccCCCc
Confidence            77788888899999988874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.3e-27  Score=220.99  Aligned_cols=269  Identities=19%  Similarity=0.191  Sum_probs=218.1

Q ss_pred             CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecce-
Q 037822          217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN-  295 (497)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-  295 (497)
                      ..++.+++.+.......++++++|++++|.+.+ ++...+..+++|++|++++|.+.+..+..+..+++|++|++++|. 
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            345566666555544455689999999999884 444444689999999999999998888899999999999999997 


Q ss_pred             eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChh
Q 037822          296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW  375 (497)
Q Consensus       296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  375 (497)
                      +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~  171 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER  171 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHH
Confidence            77666788999999999999999999777888999999999999999998666667889999999999999998 55554


Q ss_pred             HhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccc
Q 037822          376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV  455 (497)
Q Consensus       376 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  455 (497)
                      .+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.-.....       
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-------  244 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-------  244 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-------
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-------
Confidence            4445899999999999999877889999999999999999999777777999999999999999985433221       


Q ss_pred             ccccccccCEEEccCCcccccCChhhhc--cCCCCeEECCCCC
Q 037822          456 FYTTLYLVNLMDLSSNNLSGEMPVELTR--LIHLGTLNLSRNH  496 (497)
Q Consensus       456 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~l~l~~n~  496 (497)
                        .....++.+..+.+.+....|..+.+  +..++..++.+|+
T Consensus       245 --~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          245 --PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             --HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             --HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence              11233455567778887778877765  6778888888874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=6.4e-28  Score=230.24  Aligned_cols=275  Identities=18%  Similarity=0.122  Sum_probs=171.6

Q ss_pred             CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822          217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL  296 (497)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~  296 (497)
                      ...+.+++.++..+....+++++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        34 ~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             SEEECCSTTCSSCCTTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eEeeCCCCCcccccccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            33455555555444444456777777777766 34443335677777777777777766666677777777777777777


Q ss_pred             ecccCcccccCCCCCEEECccCcccccCC-cccccccCCcEEEeecc-eeeeeCCcccccCCCCCEEecCCCcCcccCCh
Q 037822          297 SGEIPRLWSNISSLYILDMSNNSLSGEIP-ESIGSLLSVRFLILCNN-HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA  374 (497)
Q Consensus       297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  374 (497)
                      +...+..+..+++|++|++++|++++... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+.
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            64333346677777777777777764333 35667777777777777 35545556667777777777777777655455


Q ss_pred             hHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCcccc---CCCCCcccCCCCCcccccceeeeeC
Q 037822          375 WIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVG---NFSGMKVEPPDSVKYEGSLQVVLKG  451 (497)
Q Consensus       375 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~  451 (497)
                      .+.. +++|+.|++++|.+.......+..+++|++|++++|.+++..+..+.   ....++.++++.+.+......    
T Consensus       193 ~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~----  267 (353)
T 2z80_A          193 SLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF----  267 (353)
T ss_dssp             TTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH----
T ss_pred             HHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh----
Confidence            4443 67777777777776532222234466777777777777655444332   344455555555544321110    


Q ss_pred             ccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          452 SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       452 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      ..+.++..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            1234456778888888888888844333457888888888888874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=6.7e-30  Score=261.92  Aligned_cols=417  Identities=15%  Similarity=0.082  Sum_probs=216.9

Q ss_pred             cEEEcCCCCCcccCCccccCCCCCCEEECCCCccccc---CC------------ccccCCCCCCEEECcCCcCcccCCcc
Q 037822           20 EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGS---IP------------PSIGNLTFLKELYLSSNQMNGKFPEN   84 (497)
Q Consensus        20 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~---~~------------~~l~~l~~L~~L~l~~n~~~~~~~~~   84 (497)
                      +.+++.++... .....+..+++|++|+++++.....   .|            .....+++|++|++++|.+++..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            34555554322 2223456677788888877642211   11            11235678888888888777655555


Q ss_pred             CC-CCCCCCEEEcCCC-ccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc--CCC-CCC
Q 037822           85 FG-QLSAVEVLDLSEN-QWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ--LGP-KFP  159 (497)
Q Consensus        85 ~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~-~~~  159 (497)
                      +. .+++|++|++++| .++.........++++|++|++++|.+.......+......+++|++|++++|.  +.. .++
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            54 5778888888887 444321222455788888888887643322222233334466678888887775  111 111


Q ss_pred             ccccCCCCccEEEeeccccccccCchhhhcccCccEEEccccc-------ccccCCccccccCCCEE-EccCCccccCCC
Q 037822          160 TWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNE-------LSGSIPNSLGFRFPATV-DLSSNSFEGPLP  231 (497)
Q Consensus       160 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~  231 (497)
                      ..+..+++|+.|++++|...+..+..+... ++|+++++..+.       +.+..+....++.++.+ .+...... ..+
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l~  282 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YLP  282 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-GGG
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-hHH
Confidence            223446888888888773222244444433 578888765443       22222222345566666 23222211 111


Q ss_pred             C---CccccceEecccCcccccCChhhhcCCCCccEEEcccCcceeccccc-ccCcCCccEEEeec---------ceeec
Q 037822          232 L---WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS-ICNLQQLLTLVISN---------NNLSG  298 (497)
Q Consensus       232 ~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~---------n~~~~  298 (497)
                      .   .+++|++|++++|.+.+.....+...+++|++|++++| +.+..... ...+++|++|++++         +.++.
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            1   23466777777666554333333446677777777766 33222222 22366677776643         22221


Q ss_pred             ccCccc-ccCCCCCEEECccCcccccCCcccc-cccCCcEEEee--c----ceeeee-----CCcccccCCCCCEEecCC
Q 037822          299 EIPRLW-SNISSLYILDMSNNSLSGEIPESIG-SLLSVRFLILC--N----NHISGE-----VPPSLKNCSMMDSLDLGD  365 (497)
Q Consensus       299 ~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~  365 (497)
                      .....+ ..+++|+.|.+..+.+++.....+. .+++|++|+++  +    +.++..     ++..+..+++|+.|++++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence            111111 2356666666666666544333333 35666666666  2    223210     111244566666666655


Q ss_pred             CcCcccCChhHhhhCCCCCEEEccCcccccCCCccc-CCCCCCCEEEccCCcCcCCCCc-cccCCCCCcccCCCCCcc
Q 037822          366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLPALHILDLSHNNLSGIIPP-CVGNFSGMKVEPPDSVKY  441 (497)
Q Consensus       366 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~~~~  441 (497)
                       .+++..+..+...+++|+.|++++|.+++.....+ ..+++|++|++++|++++..+. .+..+++|+.|++++|+.
T Consensus       442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence             45544444444446666666666666654322222 4466666666666666433222 223345555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=7.4e-27  Score=219.80  Aligned_cols=222  Identities=22%  Similarity=0.272  Sum_probs=112.6

Q ss_pred             CCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822          260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL  339 (497)
Q Consensus       260 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  339 (497)
                      +.++.|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34444444444444 33333444444444444444444 44444444444444444444444 33444444444444444


Q ss_pred             ecceeeeeCCcccc---------cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEE
Q 037822          340 CNNHISGEVPPSLK---------NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL  410 (497)
Q Consensus       340 ~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  410 (497)
                      ++|.+.+.+|..+.         .+++|++|++++|.+. .+|..+.. +++|+.|++++|+++ .+|..+..+++|++|
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEE
Confidence            44444333333332         2555555555555554 44444332 555555555555554 234445555555555


Q ss_pred             EccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeE
Q 037822          411 DLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL  490 (497)
Q Consensus       411 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l  490 (497)
                      ++++|.+.+.+|..+..+++|+.|++++|.....++        ..+..+++|+.|++++|.+.+.+|..+.++++|+.+
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP--------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC--------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc--------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            555555554555555555555555555554432222        223455666777777777777777777777777777


Q ss_pred             ECCCC
Q 037822          491 NLSRN  495 (497)
Q Consensus       491 ~l~~n  495 (497)
                      ++..+
T Consensus       307 ~l~~~  311 (328)
T 4fcg_A          307 LVPPH  311 (328)
T ss_dssp             ECCGG
T ss_pred             eCCHH
Confidence            77654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=219.91  Aligned_cols=158  Identities=22%  Similarity=0.233  Sum_probs=107.5

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      .....+++++.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            5556888888888 4555444  589999999999887666688999999999999999987777888999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccC--CCCCCccccEEEccCCc-CCCCCCccccCCCCccEEEee
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS--HWIPPFKLTFINIRSCQ-LGPKFPTWLRNQTELTTLVLN  174 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~  174 (497)
                      +|.+++ ++...+.++++|++|++++|.+.     .++.  .+..+++|++|++++|. +....+..++.+++|+.|+++
T Consensus       109 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-----~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-----TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             SSCCSS-CCHHHHTTCTTCSEEECTTCCCS-----SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CCcCCc-CCHhHhCCCccCCEEECCCCCCc-----ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            999886 55556888888888888875332     2222  34444455555555542 333333444444555555555


Q ss_pred             ccccccccCc
Q 037822          175 NVRISDTIPD  184 (497)
Q Consensus       175 ~~~~~~~~~~  184 (497)
                      +|.+.+..|.
T Consensus       183 ~n~l~~~~~~  192 (353)
T 2z80_A          183 ASDLQSYEPK  192 (353)
T ss_dssp             ETTCCEECTT
T ss_pred             CCCcCccCHH
Confidence            5444433333

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.3e-26  Score=210.85  Aligned_cols=225  Identities=16%  Similarity=0.140  Sum_probs=181.8

Q ss_pred             ceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822          238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN  317 (497)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  317 (497)
                      +.++.+++.+. .+|..+   .+.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56788888776 566543   57899999999999987778889999999999999998877788899999999999999


Q ss_pred             Cc-ccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC
Q 037822          318 NS-LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT  396 (497)
Q Consensus       318 n~-i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~  396 (497)
                      |. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence            97 77666788889999999999999998777788888999999999999988 55554444589999999999999865


Q ss_pred             CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822          397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG  475 (497)
Q Consensus       397 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  475 (497)
                      .+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+..        ..+..+..+++|+.|++++|.++.
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--------LPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--------CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc--------CCHHHcccCcccCEEeccCCCccC
Confidence            55668889999999999999988888888888888777777776643        222334566777777777776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.1e-26  Score=213.10  Aligned_cols=225  Identities=19%  Similarity=0.210  Sum_probs=186.3

Q ss_pred             cccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822          235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD  314 (497)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  314 (497)
                      .+++.|++++|.+. .+|..+. .+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            36777888888777 6676664 4888999999998888 67778888899999999998888 7788888889999999


Q ss_pred             CccCcccccCCccccc---------ccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCE
Q 037822          315 MSNNSLSGEIPESIGS---------LLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI  385 (497)
Q Consensus       315 l~~n~i~~~~~~~l~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~  385 (497)
                      +++|.+.+..|..+..         +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.. +++|+.
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-l~~L~~  233 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPKLEE  233 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-CTTCCE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-CCCCCE
Confidence            9988777677766544         889999999999887 77888888999999999999988 56666554 889999


Q ss_pred             EEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCE
Q 037822          386 LRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNL  465 (497)
Q Consensus       386 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  465 (497)
                      |++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|+....        .+..++.+++|+.
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--------iP~~l~~L~~L~~  305 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR--------LPSLIAQLPANCI  305 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC--------CCGGGGGSCTTCE
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh--------ccHHHhhccCceE
Confidence            99999988888888888999999999999988888888899999999999999888544        4445678889999


Q ss_pred             EEccCCccc
Q 037822          466 MDLSSNNLS  474 (497)
Q Consensus       466 L~l~~n~~~  474 (497)
                      +++..+.+.
T Consensus       306 l~l~~~~~~  314 (328)
T 4fcg_A          306 ILVPPHLQA  314 (328)
T ss_dssp             EECCGGGSC
T ss_pred             EeCCHHHHH
Confidence            998877665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=7e-26  Score=211.73  Aligned_cols=145  Identities=20%  Similarity=0.194  Sum_probs=78.8

Q ss_pred             CCCCccEEEcccCccee-cccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          258 KIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      .+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            34455555555555443 34445555566666666666665444555666666666666666666554555666666666


Q ss_pred             EEeecceeeeeCCcccccCC-CCCEEecCCCcCcccCC-hhHhhhCCCCCEEEccCcccccCCCcccC
Q 037822          337 LILCNNHISGEVPPSLKNCS-MMDSLDLGDNQLSGNIP-AWIGESMPSLSILRLRSNYFNGTIPPELC  402 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~  402 (497)
                      |++++|.+.+..+..+..++ +|+.|++++|++..... ..+...+...+.+.+..+.+.+..|..+.
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence            66666666655555565553 66666666666653322 11222233344444444445444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.1e-25  Score=219.31  Aligned_cols=246  Identities=19%  Similarity=0.118  Sum_probs=175.5

Q ss_pred             CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822          217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL  296 (497)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~  296 (497)
                      ..++..+..+...+.....+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            344455555544444444577777777777763333 3345778888888888888777777777888888888888887


Q ss_pred             ecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecc-eeeeeCCcccccCCCCCEEecCCCcCcccCChh
Q 037822          297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN-HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW  375 (497)
Q Consensus       297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  375 (497)
                      +...+..|..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+. .+|. 
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-  202 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-  202 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-
Confidence            7555556777888888888888887666667777888888888874 444344456777888888888888777 5554 


Q ss_pred             HhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccc
Q 037822          376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV  455 (497)
Q Consensus       376 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  455 (497)
                      + ..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+..|.++++|+.|++++|++..        ..+.
T Consensus       203 ~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~  273 (440)
T 3zyj_A          203 L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL--------LPHD  273 (440)
T ss_dssp             C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC--------CCTT
T ss_pred             c-CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc--------cChh
Confidence            2 237788888888888876667777888888888888888887777778888888888888887743        2333


Q ss_pred             ccccccccCEEEccCCccc
Q 037822          456 FYTTLYLVNLMDLSSNNLS  474 (497)
Q Consensus       456 ~~~~~~~L~~L~l~~n~~~  474 (497)
                      .+..+++|+.|+|++|++.
T Consensus       274 ~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          274 LFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTSSCTTCCEEECCSSCEE
T ss_pred             HhccccCCCEEEcCCCCcc
Confidence            4566778888888888763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.2e-25  Score=218.80  Aligned_cols=245  Identities=17%  Similarity=0.116  Sum_probs=154.7

Q ss_pred             EEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceee
Q 037822          218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS  297 (497)
Q Consensus       218 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~  297 (497)
                      .++..+..+...+...+++++.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence            3444444444333333446667777777666433333 346677777777777776666666777777777777777766


Q ss_pred             cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecc-eeeeeCCcccccCCCCCEEecCCCcCcccCChhH
Q 037822          298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN-HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI  376 (497)
Q Consensus       298 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  376 (497)
                      ...+..|..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+. .++. +
T Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~  214 (452)
T 3zyi_A          137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-L  214 (452)
T ss_dssp             BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-C
T ss_pred             ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-c
Confidence            555555666777777777777776555556667777777777763 343333445666777777777777766 4443 2


Q ss_pred             hhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccc
Q 037822          377 GESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVF  456 (497)
Q Consensus       377 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  456 (497)
                      . .+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|++...        .+..
T Consensus       215 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~  285 (452)
T 3zyi_A          215 T-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--------PHDL  285 (452)
T ss_dssp             T-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--------CTTS
T ss_pred             c-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--------ChHH
Confidence            2 366777777777777665566677777777777777777766666677777777777777766422        2233


Q ss_pred             cccccccCEEEccCCccc
Q 037822          457 YTTLYLVNLMDLSSNNLS  474 (497)
Q Consensus       457 ~~~~~~L~~L~l~~n~~~  474 (497)
                      +..+++|+.|++++|.+.
T Consensus       286 ~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             STTCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEccCCCcC
Confidence            455667777777777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.8e-29  Score=258.65  Aligned_cols=417  Identities=14%  Similarity=0.050  Sum_probs=275.5

Q ss_pred             CCCccEEEcCCCCCcc---cCC------------ccccCCCCCCEEECCCCcccccCCcccc-CCCCCCEEECcCC-cCc
Q 037822           16 SSLLEKLELGFNQLNG---DLP------------SSLGYLKNLRYLELWHNSFVGSIPPSIG-NLTFLKELYLSSN-QMN   78 (497)
Q Consensus        16 ~~~L~~L~l~~~~i~~---~~~------------~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~~~   78 (497)
                      +++|++|+++++....   ..|            ..+..+++|++|++++|.+++..+..+. .+++|++|++++| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            4589999999875321   111            1134678999999999988766555564 6889999999999 455


Q ss_pred             cc-CCccCCCCCCCCEEEcCCCccccccCh---hhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcC
Q 037822           79 GK-FPENFGQLSAVEVLDLSENQWEGIITE---THFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQL  154 (497)
Q Consensus        79 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  154 (497)
                      .. .+..+..+++|++|++++|.+++..+.   .....+++|++|++++|. .......+......+++|++|++++|..
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            32 333445789999999999987653221   133467899999998864 1011111222223467899999998843


Q ss_pred             CCCCCccccCCCCccEEEeecccc-------ccccCchhhhcccCccEE-EcccccccccCCccc-cccCCCEEEccCCc
Q 037822          155 GPKFPTWLRNQTELTTLVLNNVRI-------SDTIPDWFWQLDLTLDEL-DVAYNELSGSIPNSL-GFRFPATVDLSSNS  225 (497)
Q Consensus       155 ~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~  225 (497)
                      ...++..+..+++|+.|++..+..       .+ .+..+.. +++|+.+ .+.+... +.++... .++.|+.+++++|.
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~-~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~  300 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSG-CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYAT  300 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHT-CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCC
T ss_pred             HHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhc-CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCC
Confidence            334667778889999999765532       11 2223333 3577777 3333322 2233222 46789999999988


Q ss_pred             cccCC----CCCccccceEecccCcccccCChhhhcCCCCccEEEccc---------Ccceeccccccc-CcCCccEEEe
Q 037822          226 FEGPL----PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISF---------NSLNGSVSKSIC-NLQQLLTLVI  291 (497)
Q Consensus       226 ~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~i~~~~~~~l~-~l~~L~~L~l  291 (497)
                      +.+..    ...+++|+.|++++| +.+.....+...+++|++|++.+         +.+++.....+. .+++|++|.+
T Consensus       301 l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~  379 (594)
T 2p1m_B          301 VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY  379 (594)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence            65432    124568999999988 54333444445689999999943         445543333343 4899999988


Q ss_pred             ecceeecccCcccc-cCCCCCEEECc--c----CcccccC-----CcccccccCCcEEEeecceeeeeCCccccc-CCCC
Q 037822          292 SNNNLSGEIPRLWS-NISSLYILDMS--N----NSLSGEI-----PESIGSLLSVRFLILCNNHISGEVPPSLKN-CSMM  358 (497)
Q Consensus       292 ~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~i~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L  358 (497)
                      ..+.++......+. .+++|+.|+++  +    +.++...     +..+..+++|++|++++ .+++..+..+.. +++|
T Consensus       380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L  458 (594)
T 2p1m_B          380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM  458 (594)
T ss_dssp             EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred             hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence            88887754444443 58999999999  3    4554211     12256788999999977 555444444444 8999


Q ss_pred             CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCc-ccCCCCCCCEEEccCCcCcCCCCccc-cCCCCCcccCC
Q 037822          359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLPALHILDLSHNNLSGIIPPCV-GNFSGMKVEPP  436 (497)
Q Consensus       359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l  436 (497)
                      +.|++++|.+++..+..+..++++|+.|++++|.+++.... .+..+++|+.|++++|+++......+ ..++.++...+
T Consensus       459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~  538 (594)
T 2p1m_B          459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI  538 (594)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred             cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence            99999999998776666656699999999999998643332 34568899999999999854433333 45566655444


Q ss_pred             CC
Q 037822          437 DS  438 (497)
Q Consensus       437 ~~  438 (497)
                      ..
T Consensus       539 ~~  540 (594)
T 2p1m_B          539 DE  540 (594)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.2e-26  Score=215.47  Aligned_cols=243  Identities=21%  Similarity=0.239  Sum_probs=130.6

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCccee-ccccccc-------CcCCccEEEeecceeecccCccc--c
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSIC-------NLQQLLTLVISNNNLSGEIPRLW--S  305 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~--~  305 (497)
                      +++.+++++|.+  .+|..+...   +++|++++|.+.. ..+..+.       .+++|++|++++|.+.+..|..+  .
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            445555555554  344433221   5555555555531 2222222       45555666666555554445443  5


Q ss_pred             cCCCCCEEECccCcccccCCcccccc-----cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccC--ChhH-h
Q 037822          306 NISSLYILDMSNNSLSGEIPESIGSL-----LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI--PAWI-G  377 (497)
Q Consensus       306 ~~~~L~~L~l~~n~i~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~-~  377 (497)
                      .+++|++|++++|.+++. +..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+.+  +..+ +
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            555566666666655543 4444444     55666666666555444455555566666666666544321  1111 1


Q ss_pred             hhCCCCCEEEccCccccc--CCC-cccCCCCCCCEEEccCCcCcCCCC-ccccCCCCCcccCCCCCcccccceeeeeCcc
Q 037822          378 ESMPSLSILRLRSNYFNG--TIP-PELCKLPALHILDLSHNNLSGIIP-PCVGNFSGMKVEPPDSVKYEGSLQVVLKGSE  453 (497)
Q Consensus       378 ~~~~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  453 (497)
                      ..+++|+.|++++|++++  .++ ..+..+++|++|++++|++.+..| ..+..+++|+.|++++|.+.. ++.      
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~------  270 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK------  270 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS------
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh------
Confidence            235556666666665552  111 222345556666666666655443 334445566666666665541 111      


Q ss_pred             ccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          454 YVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       454 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                        .+.  ++|++|++++|.+++. |. +..+++|++|++++|+|
T Consensus       271 --~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          271 --GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             --SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred             --hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence              111  6778899999999865 55 88889999999999886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=4.2e-26  Score=213.97  Aligned_cols=261  Identities=17%  Similarity=0.092  Sum_probs=166.2

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +++..+++.+.+.......+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            56677788887776666667778899999999999987777889999999999999999885443  8889999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+++..      ..++|+.|++++|.+... ..      ...++|++|++++|++....+..++.+++|+.|++++|.
T Consensus        89 ~n~l~~l~------~~~~L~~L~l~~n~l~~~-~~------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           89 NNYVQELL------VGPSIETLHAANNNISRV-SC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             SSEEEEEE------ECTTCCEEECCSSCCSEE-EE------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             CCcccccc------CCCCcCEEECCCCccCCc-Cc------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            99887532      347788888877654311 10      112345666666665555444455555555555555555


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                      +.+..+..+....++|++|++++|.+++                                            . +..  .
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~--------------------------------------------~-~~~--~  188 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYD--------------------------------------------V-KGQ--V  188 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCE--------------------------------------------E-ECC--C
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCcc--------------------------------------------c-ccc--c
Confidence            5544333332222234444443333321                                            1 111  1


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCccc-ccCCcccccccCCcE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS-GEIPESIGSLLSVRF  336 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~  336 (497)
                      .+++|++|++++|.+.+.. ..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. +..+..+..+++|+.
T Consensus       189 ~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~  266 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT  266 (317)
T ss_dssp             CCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred             ccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence            2566666777766666433 33666677777777777766 45666666777777777777776 445555666666777


Q ss_pred             EEeecc
Q 037822          337 LILCNN  342 (497)
Q Consensus       337 L~l~~~  342 (497)
                      +++.++
T Consensus       267 l~l~~~  272 (317)
T 3o53_A          267 VAKQTV  272 (317)
T ss_dssp             HHHHHH
T ss_pred             EECCCc
Confidence            766644

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.9e-23  Score=211.28  Aligned_cols=268  Identities=22%  Similarity=0.200  Sum_probs=151.2

Q ss_pred             CCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccC
Q 037822          166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDN  245 (497)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~  245 (497)
                      .+++.|+++++.++ .+|..+.   ++|+.|++++|.++. ++.  .+++|+.|++++|.++.... .+++|+.|++++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcCC
Confidence            35778888888776 5555443   477888888887763 333  45666777777776664333 5556666666666


Q ss_pred             cccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCC
Q 037822          246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP  325 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  325 (497)
                      .+. .++.    .+++|+.|++++|.++. .|.   .+++|++|++++|.++ .++.   .+++|+.|++++|.+++ ++
T Consensus       112 ~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~  177 (622)
T 3g06_A          112 PLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTS-LP  177 (622)
T ss_dssp             CCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             cCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCC-Cc
Confidence            665 2332    35566666666666653 222   1356666666666665 2332   23556666666666653 33


Q ss_pred             cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCC
Q 037822          326 ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLP  405 (497)
Q Consensus       326 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  405 (497)
                         ..+++|++|++++|.+++ +|..   .++|+.|++++|.+. .++.    .+++|+.|++++|++++ +|   ..++
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~  241 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VLPS  241 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred             ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC---CCCC
Confidence               334566666666666652 3322   356666666666665 4443    14566666666666653 33   3345


Q ss_pred             CCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhcc
Q 037822          406 ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL  484 (497)
Q Consensus       406 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l  484 (497)
                      +|+.|++++|.++ .+|.   .+++|+.|++++|++..         .+..+..+++|+.|+|++|.+++..|..+..+
T Consensus       242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~---------lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR---------LPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS---------CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc---------CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            6666666666666 3333   44555555555555431         11223455555555555555555555444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.3e-25  Score=210.12  Aligned_cols=226  Identities=17%  Similarity=0.169  Sum_probs=181.8

Q ss_pred             ccceEecccCccc-ccCChhhh------cCCCCccEEEcccCcceecccccc--cCcCCccEEEeecceeecccCccccc
Q 037822          236 NVTKLYLRDNSFS-GPIPRDFG------QKIPFLTDLDISFNSLNGSVSKSI--CNLQQLLTLVISNNNLSGEIPRLWSN  306 (497)
Q Consensus       236 ~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~  306 (497)
                      .++.+++++|.+. ..++....      ..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+. |..+..
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            4777777777773 23444332      158899999999999987777766  8899999999999999855 777776


Q ss_pred             C-----CCCCEEECccCcccccCCcccccccCCcEEEeecceeeee--CCccc--ccCCCCCEEecCCCcCcc--cCChh
Q 037822          307 I-----SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE--VPPSL--KNCSMMDSLDLGDNQLSG--NIPAW  375 (497)
Q Consensus       307 ~-----~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~i~~--~~~~~  375 (497)
                      +     ++|++|++++|++.+..+..++.+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+.+  .++..
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            6     8999999999999977778899999999999999987543  23333  788999999999999873  33445


Q ss_pred             HhhhCCCCCEEEccCcccccCCC-cccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccc
Q 037822          376 IGESMPSLSILRLRSNYFNGTIP-PELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEY  454 (497)
Q Consensus       376 ~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  454 (497)
                      ++..+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+.  ++|+.|++++|++...         +
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~---------p  290 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN---------P  290 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC---------C
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC---------h
Confidence            55568999999999999997664 45667899999999999999 6777776  8999999999998543         1


Q ss_pred             cccccccccCEEEccCCcccc
Q 037822          455 VFYTTLYLVNLMDLSSNNLSG  475 (497)
Q Consensus       455 ~~~~~~~~L~~L~l~~n~~~~  475 (497)
                      . +..+++|++|++++|.+++
T Consensus       291 ~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          291 S-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C-TTTSCEEEEEECTTCTTTC
T ss_pred             h-HhhCCCCCEEeccCCCCCC
Confidence            2 5778999999999999985

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=5.4e-25  Score=206.42  Aligned_cols=252  Identities=22%  Similarity=0.157  Sum_probs=196.1

Q ss_pred             EEccCCccccCC---CCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecce
Q 037822          219 VDLSSNSFEGPL---PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN  295 (497)
Q Consensus       219 l~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~  295 (497)
                      .+++.+.+....   ....+++++|++++|.+.+ ++...+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            455555544322   1234589999999999984 444444689999999999999986544  8889999999999999


Q ss_pred             eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChh
Q 037822          296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW  375 (497)
Q Consensus       296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  375 (497)
                      +.+ .+    ..++|++|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus        92 l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           92 VQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             ccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            873 22    348999999999999865443   3678999999999998766778888999999999999998666666


Q ss_pred             HhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccc
Q 037822          376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV  455 (497)
Q Consensus       376 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  455 (497)
                      +...+++|+.|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|++++|++..         .+.
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~---------l~~  231 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL---------IEK  231 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE---------ECT
T ss_pred             HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc---------hhh
Confidence            665689999999999999854 2 34458899999999999985 45558889999999999998753         123


Q ss_pred             ccccccccCEEEccCCccc-ccCChhhhccCCCCeEECC
Q 037822          456 FYTTLYLVNLMDLSSNNLS-GEMPVELTRLIHLGTLNLS  493 (497)
Q Consensus       456 ~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~l~l~  493 (497)
                      .+..+++|+.|++++|.++ +..+..+..++.|+.++++
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            3567889999999999887 6677778888888777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=4.3e-23  Score=208.62  Aligned_cols=258  Identities=22%  Similarity=0.262  Sum_probs=127.3

Q ss_pred             CCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCcc
Q 037822          115 NLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLD  194 (497)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  194 (497)
                      .++.|+++++.+     ..++..+.  ++|++|++++|.+.. +|.   .+++|+.|++++|.++. +|.    ..++|+
T Consensus        41 ~l~~L~ls~n~L-----~~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~  104 (622)
T 3g06_A           41 GNAVLNVGESGL-----TTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV----LPPGLL  104 (622)
T ss_dssp             CCCEEECCSSCC-----SCCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC----CCTTCC
T ss_pred             CCcEEEecCCCc-----CccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCC
Confidence            455666655322     23333332  355555555555542 222   34555555555555542 222    113555


Q ss_pred             EEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCccee
Q 037822          195 ELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG  274 (497)
Q Consensus       195 ~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  274 (497)
                      +|++++|.+.                       +... .+.+|+.|++++|.++ .+|.    .+++|++|++++|.+.+
T Consensus       105 ~L~Ls~N~l~-----------------------~l~~-~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          105 ELSIFSNPLT-----------------------HLPA-LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS  155 (622)
T ss_dssp             EEEECSCCCC-----------------------CCCC-CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred             EEECcCCcCC-----------------------CCCC-CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC
Confidence            5555555544                       3222 3345555555555554 2332    23555555555555542


Q ss_pred             cccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccccc
Q 037822          275 SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN  354 (497)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  354 (497)
                      . +.   .+++|+.|++++|.++ .+|   ..+++|+.|++++|.+++ .+.   .+++|+.|++++|.++ .+|.   .
T Consensus       156 l-~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~  219 (622)
T 3g06_A          156 L-PA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---L  219 (622)
T ss_dssp             C-CC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---C
T ss_pred             c-CC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---C
Confidence            2 11   2345555555555555 233   234555666666665552 221   1245556666665554 2332   1


Q ss_pred             CCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCccc
Q 037822          355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVE  434 (497)
Q Consensus       355 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  434 (497)
                      +++|+.|++++|.++ .+|    ..+++|+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|..+.++++|+.|
T Consensus       220 ~~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          220 PSGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             CCCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence            355666666666555 344    12455666666666555 3333   3455666666666665 445556666666666


Q ss_pred             CCCCCcccc
Q 037822          435 PPDSVKYEG  443 (497)
Q Consensus       435 ~l~~~~~~~  443 (497)
                      ++++|++..
T Consensus       290 ~L~~N~l~~  298 (622)
T 3g06_A          290 NLEGNPLSE  298 (622)
T ss_dssp             ECCSCCCCH
T ss_pred             EecCCCCCC
Confidence            666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8.8e-24  Score=194.33  Aligned_cols=198  Identities=22%  Similarity=0.192  Sum_probs=100.5

Q ss_pred             EccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecc
Q 037822          220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE  299 (497)
Q Consensus       220 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  299 (497)
                      +..+..+...+...++++++|++++|.+.+. +...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus        13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             ECTTSCCSSCCSSSCTTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             EecCCCccccCCCCCCCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            3334333333332333566666666655532 222224455666666666665555555555556666666666655544


Q ss_pred             cCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeee-CCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822          300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE-VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE  378 (497)
Q Consensus       300 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  378 (497)
                      .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+. 
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-  170 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-  170 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh-
Confidence            445555556666666666655544444455555666666666555432 355555555666666666555532222222 


Q ss_pred             hCCCCC----EEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822          379 SMPSLS----ILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       379 ~~~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      .+++|+    .|++++|.+++..+..+ ...+|++|++++|++++.
T Consensus       171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSV  215 (276)
T ss_dssp             HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCC
T ss_pred             hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeec
Confidence            233333    55555555553222222 223555555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=4.7e-23  Score=188.59  Aligned_cols=203  Identities=19%  Similarity=0.219  Sum_probs=149.1

Q ss_pred             CCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822          260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL  339 (497)
Q Consensus       260 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  339 (497)
                      ...+.++++++.++. .|..+.  +++++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            457788888888873 444332  67888899888888655567888888899999888888666666788888888888


Q ss_pred             ecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC
Q 037822          340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG  419 (497)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~  419 (497)
                      ++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..|..+++|++|++++|++.+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            888887655666788888888888888887 4444444458888888888888885555557888888888888888887


Q ss_pred             CCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccc
Q 037822          420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS  474 (497)
Q Consensus       420 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  474 (497)
                      ..+..+..+++|+.|++++|++...        .+..+..+++|+.|++++|++.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred             eChhHhccCCCcCEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCee
Confidence            6666677777777766666665322        2223455666666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.4e-24  Score=213.57  Aligned_cols=236  Identities=22%  Similarity=0.152  Sum_probs=165.8

Q ss_pred             ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEE
Q 037822          234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYIL  313 (497)
Q Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  313 (497)
                      +++|+.|++++|.+.+..+.. +..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +    ..++|+.|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEE
Confidence            346777777777776433333 3577888888888888775544  77788888888888887732 2    23778888


Q ss_pred             ECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccc
Q 037822          314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF  393 (497)
Q Consensus       314 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~  393 (497)
                      ++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..++..+++|+.|++++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            8888887755443   3567888888888887666777777888888888888887666666664578888888888888


Q ss_pred             ccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcc
Q 037822          394 NGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNL  473 (497)
Q Consensus       394 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  473 (497)
                      ++.  ..+..+++|+.|++++|.+++. |..+..+++|+.|++++|.+..         .+..+..+++|+.|++++|.+
T Consensus       182 ~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~---------lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          182 YDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL---------IEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE---------ECTTCCCCTTCCEEECTTCCB
T ss_pred             ccc--cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc---------cchhhccCCCCCEEEcCCCCC
Confidence            754  2344577888888888888754 4457777888888888877642         122355677788888888877


Q ss_pred             c-ccCChhhhccCCCCeEEC
Q 037822          474 S-GEMPVELTRLIHLGTLNL  492 (497)
Q Consensus       474 ~-~~~~~~l~~l~~L~~l~l  492 (497)
                      + +.+|..+..++.|+.+++
T Consensus       250 ~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          250 HCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcchHHHHHhCCCCcEEec
Confidence            6 455566666666655554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=6.9e-24  Score=194.29  Aligned_cols=229  Identities=17%  Similarity=0.197  Sum_probs=184.5

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      .+..+++..+.+.+....   ..++.|++|+++++.+..  ...+..+++|++|++++|.+.+ . ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCccccccccc---ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence            455556666655533222   367889999999988863  3457788999999999998874 2 46788899999999


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      ++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCc
Confidence            999998777777888999999999999998666667888999999999999988 5555544458999999999999986


Q ss_pred             CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822          396 TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG  475 (497)
Q Consensus       396 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  475 (497)
                      ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.               +.+++++.++++.|.+++
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------------CCTTTTHHHHHHHHHTGG
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc---------------ccCcHHHHHHHHHHhCCC
Confidence            66666788999999999999999888878899999999999999863               457788999999999999


Q ss_pred             cCChhhhccCCC
Q 037822          476 EMPVELTRLIHL  487 (497)
Q Consensus       476 ~~~~~l~~l~~L  487 (497)
                      .+|..++.++..
T Consensus       237 ~ip~~~~~~~~~  248 (272)
T 3rfs_A          237 VVRNSAGSVAPD  248 (272)
T ss_dssp             GBBCTTSCBCGG
T ss_pred             cccCcccccCCC
Confidence            999888776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=9e-23  Score=186.74  Aligned_cols=200  Identities=21%  Similarity=0.271  Sum_probs=107.4

Q ss_pred             cceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECc
Q 037822          237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMS  316 (497)
Q Consensus       237 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  316 (497)
                      .+.++++++.++ .+|..+   .+.+++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            344444444444 333322   2445555555555554444455555555555555555553333344555556666666


Q ss_pred             cCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC
Q 037822          317 NNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT  396 (497)
Q Consensus       317 ~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~  396 (497)
                      +|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEe
Confidence            65555444444555556666666666555444444555566666666666555 34433333355666666666665544


Q ss_pred             CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcc
Q 037822          397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKY  441 (497)
Q Consensus       397 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~  441 (497)
                      .+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            334455556666666666666544444555566666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=5.6e-24  Score=210.93  Aligned_cols=236  Identities=18%  Similarity=0.113  Sum_probs=136.6

Q ss_pred             CCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEe
Q 037822           41 KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA  120 (497)
Q Consensus        41 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  120 (497)
                      ++|++|++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..      ..++|+.|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE------ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC------CCCCcCEEE
Confidence            377888888887776666777778888888888887775443  777778888888888776532      226666666


Q ss_pred             ccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEccc
Q 037822          121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAY  200 (497)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  200 (497)
                      +++|.+.....       ...++|+.|++++|.+....+..++.+++|+.|++++|.+++..|..+....++|+.|++++
T Consensus       106 L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          106 AANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            66654331110       01234555666666655555555566666666666666665544444432223444444444


Q ss_pred             ccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccc
Q 037822          201 NELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI  280 (497)
Q Consensus       201 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l  280 (497)
                      |.+++                                            . +..  ..++.|+.|++++|.+++..+ .+
T Consensus       179 N~l~~--------------------------------------------~-~~~--~~l~~L~~L~Ls~N~l~~~~~-~~  210 (487)
T 3oja_A          179 NFIYD--------------------------------------------V-KGQ--VVFAKLKTLDLSSNKLAFMGP-EF  210 (487)
T ss_dssp             SCCCE--------------------------------------------E-ECC--CCCTTCCEEECCSSCCCEECG-GG
T ss_pred             Ccccc--------------------------------------------c-ccc--ccCCCCCEEECCCCCCCCCCH-hH
Confidence            44331                                            1 111  125556666666666654333 35


Q ss_pred             cCcCCccEEEeecceeecccCcccccCCCCCEEECccCccc-ccCCcccccccCCcEEEee
Q 037822          281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS-GEIPESIGSLLSVRFLILC  340 (497)
Q Consensus       281 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~  340 (497)
                      ..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +..+..+..++.|+.+++.
T Consensus       211 ~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            56666666666666666 35555666666666666666665 3344445555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=8.8e-23  Score=187.61  Aligned_cols=201  Identities=21%  Similarity=0.170  Sum_probs=107.9

Q ss_pred             CCCEEEccCCccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEe
Q 037822          215 FPATVDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVI  291 (497)
Q Consensus       215 ~l~~l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l  291 (497)
                      .++.+++++|.+.+..+..   .++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4556666666555444322   335666666666555 223222345556666666666655555555555666666666


Q ss_pred             ecceeecccCcccccCCCCCEEECccCccccc-CCcccccccCCcEEEeecceeeeeCCcccccCCCCC----EEecCCC
Q 037822          292 SNNNLSGEIPRLWSNISSLYILDMSNNSLSGE-IPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD----SLDLGDN  366 (497)
Q Consensus       292 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~  366 (497)
                      ++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            66655544443455556666666666655532 245555566666666666665544444444444444    5566666


Q ss_pred             cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822          367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      .+. .++...+. ..+|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus       188 ~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ccc-ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            655 33333332 335666666666655433334455566666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.7e-22  Score=186.35  Aligned_cols=200  Identities=20%  Similarity=0.205  Sum_probs=117.7

Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      ..++++++++++++.++. .|..+  .++++.|++++|.+....+..+..+++|++|++++|.+++..+  ...+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             cccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            356667777777766653 33332  2566677777776665555566666677777777766664322  255666666


Q ss_pred             EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |++++|.+. .+|..+..+++|++|++++|+++ .++...+..+++|+.|++++|++++..+..|..+++|+.|++++|+
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            666666665 45555666666666666666666 4433333336666666666666664444455666666666666666


Q ss_pred             CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCC
Q 037822          417 LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       417 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~  496 (497)
                      ++...+..+..+++|                                +.|++++|.++ .+|..+..++.|+++++++|+
T Consensus       160 l~~l~~~~~~~l~~L--------------------------------~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          160 LTELPAGLLNGLENL--------------------------------DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSCCCTTTTTTCTTC--------------------------------CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             CCccCHHHhcCcCCC--------------------------------CEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            664444444555555                                55555555555 444555555556666665555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=189.24  Aligned_cols=201  Identities=19%  Similarity=0.198  Sum_probs=130.0

Q ss_pred             CCCccEEEcccCcceecccccc--cCcCCccEEEeecceeecccC----cccccCCCCCEEECccCcccccCCccccccc
Q 037822          259 IPFLTDLDISFNSLNGSVSKSI--CNLQQLLTLVISNNNLSGEIP----RLWSNISSLYILDMSNNSLSGEIPESIGSLL  332 (497)
Q Consensus       259 ~~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~  332 (497)
                      .+.|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3557777777777776666665  667777777777777664333    2234567777777777777666666677777


Q ss_pred             CCcEEEeecceeeee----CCcccccCCCCCEEecCCCcCcccCCh---hHhhhCCCCCEEEccCcccccCCCcccCCC-
Q 037822          333 SVRFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPA---WIGESMPSLSILRLRSNYFNGTIPPELCKL-  404 (497)
Q Consensus       333 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l-  404 (497)
                      +|++|++++|.+.+.    .+..+..+++|++|++++|.++ .++.   .++..+++|+.|++++|++++..|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            777777777765421    1223356677777777777775 3332   233446777777777777776556555554 


Q ss_pred             --CCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhh
Q 037822          405 --PALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELT  482 (497)
Q Consensus       405 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~  482 (497)
                        ++|++|++++|+++ .+|..+.                                  ++|++|++++|.+++. |. +.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~----------------------------------~~L~~L~Ls~N~l~~~-~~-~~  291 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP----------------------------------AKLRVLDLSSNRLNRA-PQ-PD  291 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC----------------------------------SCCSCEECCSCCCCSC-CC-TT
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc----------------------------------CCCCEEECCCCcCCCC-ch-hh
Confidence              57777777777777 4444331                                  4556677777777743 32 56


Q ss_pred             ccCCCCeEECCCCCC
Q 037822          483 RLIHLGTLNLSRNHL  497 (497)
Q Consensus       483 ~l~~L~~l~l~~n~i  497 (497)
                      .+++|++|++++|+|
T Consensus       292 ~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          292 ELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCCCSCEECSSTTT
T ss_pred             hCCCccEEECcCCCC
Confidence            777888888888775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.6e-21  Score=179.80  Aligned_cols=201  Identities=23%  Similarity=0.212  Sum_probs=146.8

Q ss_pred             ccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEee
Q 037822          213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS  292 (497)
Q Consensus       213 ~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  292 (497)
                      ++.++.++++++.++...+..+++++.|++++|.+.+..+.. +..+++|++|++++|.+++..+.  ..+++|++|+++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             cCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            344555555555555444444557778888888776443333 35678888888888888754332  677888888888


Q ss_pred             cceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccC
Q 037822          293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI  372 (497)
Q Consensus       293 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  372 (497)
                      +|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++. .+
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  163 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL  163 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred             CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence            88877 66777777888888888888888666677888888888888888887555566777888888888888887 66


Q ss_pred             ChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC
Q 037822          373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG  419 (497)
Q Consensus       373 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~  419 (497)
                      +...+..+++|+.|++++|+++ .+|..+...++|+.+++++|++..
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            6666556788888888888887 667777777788888888887763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.2e-23  Score=201.10  Aligned_cols=259  Identities=19%  Similarity=0.149  Sum_probs=152.1

Q ss_pred             EEccCCccccCCCCC---ccccceEecccCcccccCCh---hhhcCCC-CccEEEcccCcceecccccccCc-----CCc
Q 037822          219 VDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPR---DFGQKIP-FLTDLDISFNSLNGSVSKSICNL-----QQL  286 (497)
Q Consensus       219 l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~l-----~~L  286 (497)
                      ..++.+.+++..|..   ..++++|++++|.+.+..+.   ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            456666666554432   23577788888777643331   2224556 77788888877776656555554     777


Q ss_pred             cEEEeecceeecccCcc----cccC-CCCCEEECccCcccccCCcccc----c-ccCCcEEEeecceeeeeC----Cccc
Q 037822          287 LTLVISNNNLSGEIPRL----WSNI-SSLYILDMSNNSLSGEIPESIG----S-LLSVRFLILCNNHISGEV----PPSL  352 (497)
Q Consensus       287 ~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~i~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~----~~~~  352 (497)
                      ++|++++|.++...+..    +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            78888777776444432    3333 6777888887777655444332    2 257777777777776332    2233


Q ss_pred             ccCC-CCCEEecCCCcCcccCChhHhh---hC-CCCCEEEccCcccccC----CCcccCC-CCCCCEEEccCCcCcCCCC
Q 037822          353 KNCS-MMDSLDLGDNQLSGNIPAWIGE---SM-PSLSILRLRSNYFNGT----IPPELCK-LPALHILDLSHNNLSGIIP  422 (497)
Q Consensus       353 ~~~~-~L~~L~l~~~~i~~~~~~~~~~---~~-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~i~~~~~  422 (497)
                      ..++ +|++|++++|.+++..+..+..   .+ ++|+.|++++|.+++.    ++..+.. .++|++|++++|++++..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 7777777777776554443332   13 4777777777777642    2333433 3477777777777775543


Q ss_pred             ----ccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCC
Q 037822          423 ----PCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP  478 (497)
Q Consensus       423 ----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  478 (497)
                          ..+..+++|+.|++++|.+........ ......+..+++|+.||+++|.+....+
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-KALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHH-HHHHHHhccCCceEEEecCCCcCCCcch
Confidence                234556667777766666322221111 1112233456666667777776665443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.3e-21  Score=175.61  Aligned_cols=181  Identities=18%  Similarity=0.258  Sum_probs=124.3

Q ss_pred             cccceEecccCcccccCChhhhcCCCCccEEEcccCc-ceecccccccCcCCccEEEeec-ceeecccCcccccCCCCCE
Q 037822          235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNS-LNGSVSKSICNLQQLLTLVISN-NNLSGEIPRLWSNISSLYI  312 (497)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~  312 (497)
                      .+++.|++++|++. .++...+..+++|++|++++|. ++...+..+..+++|++|++++ |.+....+..|..+++|++
T Consensus        31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            36777777777776 3444334567777777777775 6666666777777777777777 7776555566777777777


Q ss_pred             EECccCcccccCCcccccccCCc---EEEeecc-eeeeeCCcccccCCCCC-EEecCCCcCcccCChhHhhhCCCCCEEE
Q 037822          313 LDMSNNSLSGEIPESIGSLLSVR---FLILCNN-HISGEVPPSLKNCSMMD-SLDLGDNQLSGNIPAWIGESMPSLSILR  387 (497)
Q Consensus       313 L~l~~n~i~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~~L~~L~  387 (497)
                      |++++|.+++ .+. +..+++|+   +|++++| .+.+..+..|..+++|+ .|++++|.+. .++...+.. ++|+.|+
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence            7777777764 343 66666666   7777777 77655555677777777 7777777776 666655553 6777777


Q ss_pred             ccCcc-cccCCCcccCCC-CCCCEEEccCCcCcCC
Q 037822          388 LRSNY-FNGTIPPELCKL-PALHILDLSHNNLSGI  420 (497)
Q Consensus       388 l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~i~~~  420 (497)
                      +++|+ +++..+..|..+ ++|+.|++++|+++..
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l  220 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL  220 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence            77774 664445566777 7777777777777743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.4e-23  Score=198.02  Aligned_cols=265  Identities=16%  Similarity=0.161  Sum_probs=148.4

Q ss_pred             EEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCC----ccccCCC-CCCEEECcCCcCcccCCccCCCC-----CC
Q 037822           21 KLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIP----PSIGNLT-FLKELYLSSNQMNGKFPENFGQL-----SA   90 (497)
Q Consensus        21 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~   90 (497)
                      ++.++.+.+++..|..+...++|++|++++|.+.+..+    .++..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            56788888888777766777779999999999886655    6778888 89999999999887666666654     88


Q ss_pred             CCEEEcCCCccccccCh---hhhhcC-CCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCC
Q 037822           91 VEVLDLSENQWEGIITE---THFRNL-SNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQT  166 (497)
Q Consensus        91 L~~L~l~~n~l~~~~~~---~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~  166 (497)
                      |++|++++|.+++..+.   ..+..+ ++|++|++++|.+.......+...+...                       .+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-----------------------~~  138 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL-----------------------PA  138 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS-----------------------CT
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC-----------------------CC
Confidence            99999999988764332   123344 6677777766544322111111222221                       23


Q ss_pred             CccEEEeeccccccccCchh----hhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEec
Q 037822          167 ELTTLVLNNVRISDTIPDWF----WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYL  242 (497)
Q Consensus       167 ~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l  242 (497)
                      +|++|++++|.+.+..+..+    ....++|++|++++|.+++..+..+...               .....++|+.|++
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---------------l~~~~~~L~~L~L  203 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF---------------LASIPASVTSLDL  203 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH---------------HHTSCTTCCEEEC
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH---------------HHhCCCCCCEEEC
Confidence            55555555555543332222    1221255555555555543322211000               0000012333333


Q ss_pred             ccCccccc----CChhhhcCCCCccEEEcccCcceeccc----ccccCcCCccEEEeecceeec-------ccCcccccC
Q 037822          243 RDNSFSGP----IPRDFGQKIPFLTDLDISFNSLNGSVS----KSICNLQQLLTLVISNNNLSG-------EIPRLWSNI  307 (497)
Q Consensus       243 ~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~l~~n~~~~-------~~~~~~~~~  307 (497)
                      ++|.+.+.    ++..+....+.|++|++++|.+++..+    ..+..+++|++|++++|.+..       ..+..+..+
T Consensus       204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l  283 (362)
T 3goz_A          204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI  283 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred             CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence            33333321    222332234567777777777765433    233456677777777776331       122344556


Q ss_pred             CCCCEEECccCccccc
Q 037822          308 SSLYILDMSNNSLSGE  323 (497)
Q Consensus       308 ~~L~~L~l~~n~i~~~  323 (497)
                      ++|++|++++|.+...
T Consensus       284 ~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          284 QKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CEEEEECTTSCBCCGG
T ss_pred             CceEEEecCCCcCCCc
Confidence            6666777777766543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2e-21  Score=174.48  Aligned_cols=199  Identities=22%  Similarity=0.275  Sum_probs=146.0

Q ss_pred             CCCccEEEcccCcceecccccccCcCCccEEEeecce-eecccCcccccCCCCCEEECcc-CcccccCCcccccccCCcE
Q 037822          259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN-LSGEIPRLWSNISSLYILDMSN-NSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       259 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~l~~~~~L~~  336 (497)
                      .+.+++|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3478888898888887777788888888888888886 7755556788888888888888 8888666677888888888


Q ss_pred             EEeecceeeeeCCcccccCCCCC---EEecCCC-cCcccCChhHhhhCCCCC-EEEccCcccccCCCc-ccCCCCCCCEE
Q 037822          337 LILCNNHISGEVPPSLKNCSMMD---SLDLGDN-QLSGNIPAWIGESMPSLS-ILRLRSNYFNGTIPP-ELCKLPALHIL  410 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~-~l~~l~~L~~L  410 (497)
                      |++++|.+.+ +|. +..+++|+   .|++++| .+. .++...+..+++|+ .|++++|+++ .++. .+.. ++|++|
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L  184 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAV  184 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEE
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEE
Confidence            8888888874 554 77777777   8888888 776 55554444578888 8888888877 4443 3444 778888


Q ss_pred             EccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCe
Q 037822          411 DLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGT  489 (497)
Q Consensus       411 ~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  489 (497)
                      ++++|+ +.+..+..+..+                               .++|+.|++++|.+++. |..  .+++|+.
T Consensus       185 ~L~~n~~l~~i~~~~~~~l-------------------------------~~~L~~L~l~~N~l~~l-~~~--~~~~L~~  230 (239)
T 2xwt_C          185 YLNKNKYLTVIDKDAFGGV-------------------------------YSGPSLLDVSQTSVTAL-PSK--GLEHLKE  230 (239)
T ss_dssp             ECTTCTTCCEECTTTTTTC-------------------------------SBCCSEEECTTCCCCCC-CCT--TCTTCSE
T ss_pred             EcCCCCCcccCCHHHhhcc-------------------------------ccCCcEEECCCCccccC-Chh--HhccCce
Confidence            888884 765545545444                               04557788888888744 432  6778888


Q ss_pred             EECCCCC
Q 037822          490 LNLSRNH  496 (497)
Q Consensus       490 l~l~~n~  496 (497)
                      |+++++.
T Consensus       231 L~l~~~~  237 (239)
T 2xwt_C          231 LIARNTW  237 (239)
T ss_dssp             EECTTC-
T ss_pred             eeccCcc
Confidence            8888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1.9e-21  Score=178.08  Aligned_cols=203  Identities=17%  Similarity=0.210  Sum_probs=160.9

Q ss_pred             CCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEE
Q 037822          259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI  338 (497)
Q Consensus       259 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  338 (497)
                      +..+..+++..+.+.+.  .....+++|+.|++++|.+. .. ..+..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            34555666666666433  34667899999999999887 33 3578899999999999998743  4788899999999


Q ss_pred             eecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822          339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       339 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      +++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            9999998767777889999999999999998 555544445899999999999998666666789999999999999999


Q ss_pred             CCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccccc
Q 037822          419 GIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGE  476 (497)
Q Consensus       419 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  476 (497)
                      +..+..+..+++|+.|++++|++..        ..+..+..+++|+.|++++|.+...
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLKS--------VPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCHHHhcCCccCCEEECCCCcCCc--------cCHHHHhCCcCCCEEEccCCCcccc
Confidence            7777778888888888888887743        2333456778888888888877643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.5e-23  Score=194.88  Aligned_cols=233  Identities=15%  Similarity=0.156  Sum_probs=150.9

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceec-ccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS-VSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD  314 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  314 (497)
                      +++.+++++|.+.+..+. + ..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             cceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            555566666655544333 2 2567777777777776644 555667777777888777777656666677777788888


Q ss_pred             CccC-ccccc-CCcccccccCCcEEEeecc-eeeee-CCcccccCC-CCCEEecCCC--cCcc-cCChhHhhhCCCCCEE
Q 037822          315 MSNN-SLSGE-IPESIGSLLSVRFLILCNN-HISGE-VPPSLKNCS-MMDSLDLGDN--QLSG-NIPAWIGESMPSLSIL  386 (497)
Q Consensus       315 l~~n-~i~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~i~~-~~~~~~~~~~~~L~~L  386 (497)
                      +++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .+++ .++..+ ..+++|+.|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-hhCCCCCEE
Confidence            8777 55532 3445666777888888877 66533 345566777 8888888887  4442 333333 347888888


Q ss_pred             EccCcc-cccCCCcccCCCCCCCEEEccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccc-ccc
Q 037822          387 RLRSNY-FNGTIPPELCKLPALHILDLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL-YLV  463 (497)
Q Consensus       387 ~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L  463 (497)
                      ++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++| +...           .+..+ ..+
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~-----------~~~~l~~~l  295 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG-----------TLQLLKEAL  295 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT-----------CHHHHHHHS
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH-----------HHHHHHhhC
Confidence            888887 555556667777888888888874 32222235677788888888877 2110           11222 346


Q ss_pred             CEEEccCCcccccCChhhhc
Q 037822          464 NLMDLSSNNLSGEMPVELTR  483 (497)
Q Consensus       464 ~~L~l~~n~~~~~~~~~l~~  483 (497)
                      +.|++++|.+++..|..+..
T Consensus       296 ~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          296 PHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTSEESCCCSCCTTCSSCSS
T ss_pred             cceEEecccCccccCCcccc
Confidence            66778888888777766553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1e-22  Score=193.00  Aligned_cols=246  Identities=14%  Similarity=0.109  Sum_probs=190.6

Q ss_pred             ccceEecccCcccccCChhhhcCC--CCccEEEcccCcceecccccccCcCCccEEEeecceeecc-cCcccccCCCCCE
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKI--PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE-IPRLWSNISSLYI  312 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~  312 (497)
                      ..+.++++++.+..    .....+  +.++.+++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            35667777766542    222344  8999999999999866554 56789999999999998754 7777889999999


Q ss_pred             EECccCcccccCCcccccccCCcEEEeecc-eeeee-CCcccccCCCCCEEecCCC-cCcccCChhHhhhCC-CCCEEEc
Q 037822          313 LDMSNNSLSGEIPESIGSLLSVRFLILCNN-HISGE-VPPSLKNCSMMDSLDLGDN-QLSGNIPAWIGESMP-SLSILRL  388 (497)
Q Consensus       313 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~-~L~~L~l  388 (497)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++.........++ +|+.|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999998777888889999999999999 56642 5566788999999999999 888643233344589 9999999


Q ss_pred             cCc--ccc-cCCCcccCCCCCCCEEEccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccC
Q 037822          389 RSN--YFN-GTIPPELCKLPALHILDLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVN  464 (497)
Q Consensus       389 ~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  464 (497)
                      ++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|.....       .....+..+++|+
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-------~~~~~l~~~~~L~  275 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-------ETLLELGEIPTLK  275 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------GGGGGGGGCTTCC
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------HHHHHHhcCCCCC
Confidence            999  454 3455667789999999999999 7777788999999999999999962211       1113457799999


Q ss_pred             EEEccCCcccccCChhhhcc-CCCCeEECCCCCC
Q 037822          465 LMDLSSNNLSGEMPVELTRL-IHLGTLNLSRNHL  497 (497)
Q Consensus       465 ~L~l~~n~~~~~~~~~l~~l-~~L~~l~l~~n~i  497 (497)
                      +|++++| ++..   .+..+ ..+..|++++|++
T Consensus       276 ~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          276 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             EEECTTS-SCTT---CHHHHHHHSTTSEESCCCS
T ss_pred             EEeccCc-cCHH---HHHHHHhhCcceEEecccC
Confidence            9999999 5433   34444 3466777888864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=9.1e-21  Score=171.39  Aligned_cols=165  Identities=23%  Similarity=0.269  Sum_probs=95.6

Q ss_pred             CccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEee
Q 037822          261 FLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC  340 (497)
Q Consensus       261 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  340 (497)
                      ..++++++++.+. ..|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4556666666665 2333332  456666666666665555556666666666666666665555556666666666666


Q ss_pred             cceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822          341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       341 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      +|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++..+..|..+++|++|++++|++.+.
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            66666444455566666666666666665 44443333456666666666666544334555666666666666666644


Q ss_pred             CCccccCCC
Q 037822          421 IPPCVGNFS  429 (497)
Q Consensus       421 ~~~~l~~l~  429 (497)
                      .+..+..++
T Consensus       171 ~~~~~~~l~  179 (251)
T 3m19_A          171 PHGAFDRLG  179 (251)
T ss_dssp             CTTTTTTCT
T ss_pred             CHHHHhCCC
Confidence            444444333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3.8e-23  Score=199.73  Aligned_cols=236  Identities=15%  Similarity=0.173  Sum_probs=133.3

Q ss_pred             CCCCccEEEcccCcceecccc----cccCcCCccEEEeeccee---ecccCccc-------ccCCCCCEEECccCcccc-
Q 037822          258 KIPFLTDLDISFNSLNGSVSK----SICNLQQLLTLVISNNNL---SGEIPRLW-------SNISSLYILDMSNNSLSG-  322 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~l~~n~~---~~~~~~~~-------~~~~~L~~L~l~~n~i~~-  322 (497)
                      .++.|++|++++|.+....+.    .+..+++|++|++++|.+   .+..|..+       ..+++|++|++++|.+.. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            456666666666666544332    244566666666666432   22223222       456667777777766664 


Q ss_pred             ---cCCcccccccCCcEEEeecceeeeeCCcc----cccC---------CCCCEEecCCCcCccc-CCh--hHhhhCCCC
Q 037822          323 ---EIPESIGSLLSVRFLILCNNHISGEVPPS----LKNC---------SMMDSLDLGDNQLSGN-IPA--WIGESMPSL  383 (497)
Q Consensus       323 ---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~i~~~-~~~--~~~~~~~~L  383 (497)
                         ..+..+..+++|++|++++|.++...+..    +..+         ++|++|++++|.+.+. ++.  .....+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               23445566666777777776664322222    2223         6777777777766522 221  122236677


Q ss_pred             CEEEccCccccc-----CCCcccCCCCCCCEEEccCCcCc----CCCCccccCCCCCcccCCCCCcccccceeeeeCccc
Q 037822          384 SILRLRSNYFNG-----TIPPELCKLPALHILDLSHNNLS----GIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEY  454 (497)
Q Consensus       384 ~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  454 (497)
                      +.|++++|+++.     ..+..+..+++|++|++++|.++    ..+|..+..+++|+.|++++|.+.......    .+
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~----l~  265 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA----VV  265 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH----HH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH----HH
Confidence            777777776652     12225566667777777777764    345556666777777777777654321110    11


Q ss_pred             ccc--ccccccCEEEccCCcccc----cCChhh-hccCCCCeEECCCCCC
Q 037822          455 VFY--TTLYLVNLMDLSSNNLSG----EMPVEL-TRLIHLGTLNLSRNHL  497 (497)
Q Consensus       455 ~~~--~~~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~l~l~~n~i  497 (497)
                      ..+  +.+++|+.|+|++|.+++    .+|..+ .++++|++|++++|+|
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            122  236677777777777765    355555 4567777777777764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.6e-23  Score=202.32  Aligned_cols=131  Identities=16%  Similarity=0.186  Sum_probs=69.3

Q ss_pred             CCCCccEEEcccCcceec-----ccccccCcCCccEEEeecceee----cccCcccccCCCCCEEECccCccccc----C
Q 037822          258 KIPFLTDLDISFNSLNGS-----VSKSICNLQQLLTLVISNNNLS----GEIPRLWSNISSLYILDMSNNSLSGE----I  324 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~-----~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~  324 (497)
                      .++.|++|++++|.+...     .+..+..+++|++|++++|.++    ..++..+..+++|++|++++|.+++.    .
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            455666666666665521     2224556666666666666663    34455556666666666666666543    2


Q ss_pred             Ccccc--cccCCcEEEeecceeee----eCCccc-ccCCCCCEEecCCCcCcccCC--hhHhhhCCCCCEEEc
Q 037822          325 PESIG--SLLSVRFLILCNNHISG----EVPPSL-KNCSMMDSLDLGDNQLSGNIP--AWIGESMPSLSILRL  388 (497)
Q Consensus       325 ~~~l~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~~L~~L~l  388 (497)
                      +..+.  .+++|++|++++|.++.    .++..+ ..+++|+.|++++|.+.+..+  ..+...++.++.+++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL  337 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence            23332  25556666666666553    244444 345666666666666554432  333333444443333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.8e-20  Score=168.16  Aligned_cols=180  Identities=19%  Similarity=0.232  Sum_probs=148.1

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      ..+.++++++.+. .+|..+   .+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4566777777766 566543   367888899988888777778888899999999999988777777888999999999


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCc
Confidence            999998777777888999999999999998666666788999999999999998 5555444458999999999999987


Q ss_pred             CCCcccCCCCCCCEEEccCCcCcCC
Q 037822          396 TIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       396 ~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      ..+..+..+++|+.|++++|++...
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6666888999999999999999855

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.9e-21  Score=177.89  Aligned_cols=194  Identities=20%  Similarity=0.307  Sum_probs=162.2

Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      ..+++|++|++++|.+... + .+..+++|++|++++|.+.. .+. +..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            3588999999999998753 3 68889999999999999984 444 88999999999999999843  36888999999


Q ss_pred             EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |++++|.+.+ .+ .+..+++|++|++++|.+. .++. + ..+++|+.|++++|++++ ++. +..+++|++|++++|+
T Consensus       112 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          112 LDLTSTQITD-VT-PLAGLSNLQVLYLDLNQIT-NISP-L-AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EECTTSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCC-ch-hhcCCCCCCEEECCCCccC-cCcc-c-cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence            9999999974 33 4889999999999999998 4443 3 348999999999999984 443 8899999999999999


Q ss_pred             CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822          417 LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG  475 (497)
Q Consensus       417 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  475 (497)
                      +.+..+  +..+++|+.|++++|++....+          +..+++|+.|++++|.+++
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~----------l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVSP----------LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCGG----------GTTCTTCCEEEEEEEEEEC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCcccc----------ccCCCCCCEEEccCCeeec
Confidence            986543  8899999999999998854331          4778999999999999975

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=3.6e-21  Score=179.81  Aligned_cols=228  Identities=18%  Similarity=0.133  Sum_probs=161.5

Q ss_pred             CccEEEcCCCCCcccCCc---cccCCCCCCEEECCCCcccccCCccc--cCCCCCCEEECcCCcCcccCC----ccCCCC
Q 037822           18 LLEKLELGFNQLNGDLPS---SLGYLKNLRYLELWHNSFVGSIPPSI--GNLTFLKELYLSSNQMNGKFP----ENFGQL   88 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~l   88 (497)
                      .++.+.+.++.++.....   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            477788887776532111   12345678888888888887777777  788888888888888875433    334578


Q ss_pred             CCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCc----cccC
Q 037822           89 SAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPT----WLRN  164 (497)
Q Consensus        89 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~  164 (497)
                      ++|++|++++|.+.+..+. .+..+++|++|++++|.+...........+..+++|++|++++|++.. .+.    .++.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            8888888888888764443 778888888888888653211111112233567788888888888753 222    2467


Q ss_pred             CCCccEEEeeccccccccCchhhhcc--cCccEEEcccccccccCCccccccCCCEEEccCCccccC-CCCCccccceEe
Q 037822          165 QTELTTLVLNNVRISDTIPDWFWQLD--LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGP-LPLWSFNVTKLY  241 (497)
Q Consensus       165 l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~L~~L~  241 (497)
                      +++|++|++++|.+.+..|..+....  ++|++|++++|.++ .+|..+. ++|+.+++++|.+++. .+..+++|+.|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence            78899999999988877676665542  58899999999888 4555443 7889999999988873 455677999999


Q ss_pred             cccCcccc
Q 037822          242 LRDNSFSG  249 (497)
Q Consensus       242 l~~~~~~~  249 (497)
                      +++|.+++
T Consensus       301 L~~N~l~~  308 (310)
T 4glp_A          301 LDGNPFLV  308 (310)
T ss_dssp             CSSTTTSC
T ss_pred             CcCCCCCC
Confidence            99998863

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=9e-20  Score=169.88  Aligned_cols=192  Identities=20%  Similarity=0.285  Sum_probs=163.3

Q ss_pred             ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEE
Q 037822          234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYIL  313 (497)
Q Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  313 (497)
                      +++++.|++++|.+. .++ . ...+++|++|++++|.+.+..+  +..+++|++|++++|.+.. . ..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence            569999999999987 444 2 3579999999999999986544  8899999999999999874 3 468899999999


Q ss_pred             ECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccc
Q 037822          314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF  393 (497)
Q Consensus       314 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~  393 (497)
                      ++++|.+++. + .+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+. .++.  ...+++|+.|++++|++
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-S-PLAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-c-cccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCcc
Confidence            9999999854 3 388999999999999999743 3 3889999999999999998 4544  34599999999999999


Q ss_pred             ccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccc
Q 037822          394 NGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEG  443 (497)
Q Consensus       394 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~  443 (497)
                      ++. + .+..+++|++|++++|++.+..  .+..+++|+.|++++|++..
T Consensus       186 ~~~-~-~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcC-h-hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            853 3 3889999999999999999665  38999999999999999855

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=2.3e-19  Score=170.45  Aligned_cols=238  Identities=18%  Similarity=0.100  Sum_probs=167.2

Q ss_pred             EEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCccee-cccccccCcCCccE-EEeecce
Q 037822          218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLT-LVISNNN  295 (497)
Q Consensus       218 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~-L~l~~n~  295 (497)
                      .++.+++.++..+...+.++++|++++|+++ .++...+..+++|++|++++|.+.+ ..+.+|.+++++++ +.+..|+
T Consensus        13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            3455555555443333457888888888887 6666666788899999999988754 34456778888775 4555677


Q ss_pred             eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeec-ceeeeeCCcccccCC-CCCEEecCCCcCcccCC
Q 037822          296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN-NHISGEVPPSLKNCS-MMDSLDLGDNQLSGNIP  373 (497)
Q Consensus       296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~  373 (497)
                      +....+..|..+++|++|++++|++....+..+.....+..+++.+ +.+....+..|..++ .++.|++++|++. .++
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~  170 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIH  170 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EEC
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCC
Confidence            8766678888889999999999988866666666677788888866 456544455566554 6888999999888 677


Q ss_pred             hhHhhhCCCCCEEEccC-cccccCCC-cccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeC
Q 037822          374 AWIGESMPSLSILRLRS-NYFNGTIP-PELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKG  451 (497)
Q Consensus       374 ~~~~~~~~~L~~L~l~~-n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  451 (497)
                      ...+. .++|+++++.+ |.++ .+| ..|..+++|++|++++|+++...+..+.++++|+.++....+   .++.    
T Consensus       171 ~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~---~lP~----  241 (350)
T 4ay9_X          171 NSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT----  241 (350)
T ss_dssp             TTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCC---CCCC----
T ss_pred             hhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcC---cCCC----
Confidence            66665 67888888875 4555 554 467888999999999999886655556666666555543322   2221    


Q ss_pred             ccccccccccccCEEEccCC
Q 037822          452 SEYVFYTTLYLVNLMDLSSN  471 (497)
Q Consensus       452 ~~~~~~~~~~~L~~L~l~~n  471 (497)
                           +..+++|+.++++++
T Consensus       242 -----l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          242 -----LEKLVALMEASLTYP  256 (350)
T ss_dssp             -----TTTCCSCCEEECSCH
T ss_pred             -----chhCcChhhCcCCCC
Confidence                 356778888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.5e-19  Score=170.28  Aligned_cols=242  Identities=19%  Similarity=0.168  Sum_probs=188.9

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccC-cccccCCCCCE-E
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLYI-L  313 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~-L  313 (497)
                      .-+.++.++++++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+.+.++ .+|.+++++++ +
T Consensus        10 ~~~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           10 SNRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             ETTEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             eCCEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            4467888888888 778765   5689999999999997777889999999999999999764444 56888888876 5


Q ss_pred             ECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC-cCcccCChhHhhhC-CCCCEEEccCc
Q 037822          314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN-QLSGNIPAWIGESM-PSLSILRLRSN  391 (497)
Q Consensus       314 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~-~~L~~L~l~~n  391 (497)
                      .+.+|+++...+..|..+++|++|++++|.+....+..+....++..+++.++ .+. .++...+..+ ..++.|++++|
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSS
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccc
Confidence            56678999888889999999999999999998655556667778889999764 565 6665444434 46899999999


Q ss_pred             ccccCCCcccCCCCCCCEEEccC-CcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccC
Q 037822          392 YFNGTIPPELCKLPALHILDLSH-NNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSS  470 (497)
Q Consensus       392 ~~~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  470 (497)
                      +++ .++.......+|+++++++ |.+....++.|..+++|+.|++++|++.....           ..+.+|+.|.+.+
T Consensus       165 ~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----------~~~~~L~~L~~l~  232 (350)
T 4ay9_X          165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----------YGLENLKKLRARS  232 (350)
T ss_dssp             CCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----------SSCTTCCEEECTT
T ss_pred             ccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----------hhhccchHhhhcc
Confidence            998 4555555667899999986 56775555678999999999999999854322           2366777887766


Q ss_pred             CcccccCChhhhccCCCCeEECCCC
Q 037822          471 NNLSGEMPVELTRLIHLGTLNLSRN  495 (497)
Q Consensus       471 n~~~~~~~~~l~~l~~L~~l~l~~n  495 (497)
                      +.--...| .+..+++|+.++++++
T Consensus       233 ~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          233 TYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCCcCcCC-CchhCcChhhCcCCCC
Confidence            64333555 3889999999999753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.6e-19  Score=158.29  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=83.6

Q ss_pred             CCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEc
Q 037822          309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL  388 (497)
Q Consensus       309 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l  388 (497)
                      ++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence            4444444444444333333444445555555555444333333444555555555555554 333332223555555555


Q ss_pred             cCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEc
Q 037822          389 RSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDL  468 (497)
Q Consensus       389 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  468 (497)
                      ++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.               +.+++|+.|++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~L~~  172 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSE  172 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------------CCTTTTHHHHH
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------------cCCCCHHHHHH
Confidence            555555333333455555555555555555444444555555555555555432               33556677777


Q ss_pred             cCCcccccCChhhhccCC
Q 037822          469 SSNNLSGEMPVELTRLIH  486 (497)
Q Consensus       469 ~~n~~~~~~~~~l~~l~~  486 (497)
                      +.|.+++.+|..++.++.
T Consensus       173 ~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          173 WINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHHCTTTBBCTTSSBCT
T ss_pred             HHHhCCceeeccCccccC
Confidence            888887777777766654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=5e-19  Score=155.13  Aligned_cols=181  Identities=22%  Similarity=0.270  Sum_probs=130.1

Q ss_pred             ceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822          238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN  317 (497)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  317 (497)
                      +.++.+++.++ .+|..   ..+++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            34444444444 34433   245677777777777766666677778888888888877755555667788888888888


Q ss_pred             CcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC
Q 037822          318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI  397 (497)
Q Consensus       318 n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  397 (497)
                      |.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+  
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~--  162 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC--  162 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec--
Confidence            8887666666777888888888888887555556777888888888888887 4555444457888888888887653  


Q ss_pred             CcccCCCCCCCEEEccCCcCcCCCCccccCCCC
Q 037822          398 PPELCKLPALHILDLSHNNLSGIIPPCVGNFSG  430 (497)
Q Consensus       398 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~  430 (497)
                           .+++|+.|+++.|++++.+|.+++.++.
T Consensus       163 -----~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 -----TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                 3567888888888888888887776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2.9e-18  Score=163.51  Aligned_cols=128  Identities=25%  Similarity=0.299  Sum_probs=63.0

Q ss_pred             EEEeecceeecccCcccccCCCCCEEECccCcccccCCcccc-cccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC
Q 037822          288 TLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG-SLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN  366 (497)
Q Consensus       288 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  366 (497)
                      .++++++.+. .+|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            4444444444 3333221  3345555555555544444444 4555555555555555444444555555555555555


Q ss_pred             cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC
Q 037822          367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG  419 (497)
Q Consensus       367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~  419 (497)
                      .+. .++...+..+++|+.|++++|++++..+..|..+++|++|+|++|++.+
T Consensus        99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            554 3333333335555555555555554444455555555555555555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1.4e-17  Score=166.38  Aligned_cols=189  Identities=25%  Similarity=0.308  Sum_probs=102.7

Q ss_pred             CccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEee
Q 037822          261 FLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC  340 (497)
Q Consensus       261 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  340 (497)
                      +++.|++++|.+++ .|..+  +++|++|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            45555555555543 23222  245555555555555 343   234555666666665553 333 332  56666666


Q ss_pred             cceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822          341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       341 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      +|.+++ +|.   .+++|+.|++++|.++ .+|.    .+++|+.|++++|++++ +|. |.  ++|+.|++++|+|+ .
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            665553 333   3556666666666665 3443    25566666666666653 444 33  56666666666666 3


Q ss_pred             CCccccCCCCC-------cccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCC
Q 037822          421 IPPCVGNFSGM-------KVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIH  486 (497)
Q Consensus       421 ~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~  486 (497)
                      +|. +..  +|       +.|++++|++..         .+..+..+++|+.|+|++|.+++.+|..|..++.
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~---------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRITH---------IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCCC---------CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCccee---------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            343 332  44       555555555531         1122334677788999999998888888777643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.2e-17  Score=147.41  Aligned_cols=152  Identities=19%  Similarity=0.249  Sum_probs=74.4

Q ss_pred             cEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecc
Q 037822          263 TDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN  342 (497)
Q Consensus       263 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~  342 (497)
                      +.++.+++.++. .|..+.  +++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            345555555542 222221  45555555555555444444555555555555555555444555555555555555555


Q ss_pred             eeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822          343 HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       343 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      .++...+..|..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|++++..+..|..+++|++|++++|++.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5553333334455555555555555542222222 22455555555555555433334455555555555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=147.63  Aligned_cols=152  Identities=19%  Similarity=0.187  Sum_probs=103.7

Q ss_pred             CEEECccCcccccCCcccccccCCcEEEeecceeeeeCC-cccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEcc
Q 037822          311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP-PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR  389 (497)
Q Consensus       311 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  389 (497)
                      +.+++++|.++ .+|..+  .+.+++|++++|.+++..+ ..+..+++|+.|++++|.+. .++...+..+++|+.|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence            57888888887 445433  3457888888888876544 45778888888888888887 4444333448888888888


Q ss_pred             CcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822          390 SNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS  469 (497)
Q Consensus       390 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  469 (497)
                      +|.+++..+..|..+++|++|++++|++.+..|..|..+++|+.|++++|.+...        .+..+..+++|++|+++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEECC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEEec
Confidence            8888866666688888888888888888877777777776666655555554221        12233444555555555


Q ss_pred             CCccc
Q 037822          470 SNNLS  474 (497)
Q Consensus       470 ~n~~~  474 (497)
                      +|.++
T Consensus       162 ~N~l~  166 (220)
T 2v70_A          162 ANPFN  166 (220)
T ss_dssp             SCCEE
T ss_pred             CcCCc
Confidence            55543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=2.6e-17  Score=145.11  Aligned_cols=145  Identities=22%  Similarity=0.283  Sum_probs=115.8

Q ss_pred             cEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC
Q 037822          287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN  366 (497)
Q Consensus       287 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  366 (497)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            57788888877 5665543  68899999999988777778888899999999999988777888888899999999999


Q ss_pred             cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccC
Q 037822          367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP  435 (497)
Q Consensus       367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  435 (497)
                      .+. .++...+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            888 67776666688889999998888877677888888888888888888876666666555554433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=5.8e-18  Score=169.07  Aligned_cols=188  Identities=24%  Similarity=0.303  Sum_probs=122.1

Q ss_pred             CCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecc
Q 037822          215 FPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN  294 (497)
Q Consensus       215 ~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n  294 (497)
                      .++.+++++|.+.+..+..+++|+.|++++|.+. .+|    ..+++|+.|++++|.+++ .|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence            4444444444444432223446677777777666 455    246777777777777765 343 433  7777777777


Q ss_pred             eeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh
Q 037822          295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA  374 (497)
Q Consensus       295 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  374 (497)
                      .+++ +|.   .+++|+.|++++|.+++ ++.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+|.
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence            7764 444   46777777777777764 333   45677777887777764 554 44  77888888888777 6665


Q ss_pred             hHhhhCCCC-------CEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCC
Q 037822          375 WIGESMPSL-------SILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFS  429 (497)
Q Consensus       375 ~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~  429 (497)
                       +.   .+|       +.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus       198 -~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          198 -VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             -HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence             32   255       88888888877 5677677788888888888888777776665544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=5.5e-18  Score=156.32  Aligned_cols=172  Identities=22%  Similarity=0.305  Sum_probs=131.5

Q ss_pred             cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822          257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF  336 (497)
Q Consensus       257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  336 (497)
                      ..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ . ..+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence            3578889999999888744  3477788999999999888743 33 7888899999999998874 2 34788888999


Q ss_pred             EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |++++|.+.+.  ..+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|++++. +. +..+++|++|++++|+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhc-cCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCc
Confidence            99998888742  567788889999998888873 4 3333 488888888888888754 33 7888888888888888


Q ss_pred             CcCCCCccccCCCCCcccCCCCCcccc
Q 037822          417 LSGIIPPCVGNFSGMKVEPPDSVKYEG  443 (497)
Q Consensus       417 i~~~~~~~l~~l~~L~~L~l~~~~~~~  443 (497)
                      +++. + .+..+++|+.|++++|++..
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            8853 3 47777777777777776644

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=8.9e-18  Score=160.14  Aligned_cols=176  Identities=22%  Similarity=0.213  Sum_probs=103.0

Q ss_pred             CEEEccCCccccCCCCCccccceEecccCcccccCChhhhc-CCCCccEEEcccCcceecccccccCcCCccEEEeecce
Q 037822          217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN  295 (497)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~  295 (497)
                      +.++++++.+.......+..++.|++++|.+.+ ++...+. .+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            456666666665444444456666666666663 3333223 56666666666666665555566666666666666666


Q ss_pred             eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccc---ccCCCCCEEecCCCcCcccC
Q 037822          296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL---KNCSMMDSLDLGDNQLSGNI  372 (497)
Q Consensus       296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~  372 (497)
                      +....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+   ..+++|+.|++++|.+. .+
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  178 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KL  178 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-cc
Confidence            665445556666666666666666665555666666666666666666653222223   34666666666666666 44


Q ss_pred             ChhHhhhCCC--CCEEEccCcccc
Q 037822          373 PAWIGESMPS--LSILRLRSNYFN  394 (497)
Q Consensus       373 ~~~~~~~~~~--L~~L~l~~n~~~  394 (497)
                      +...+..++.  ++.|++++|.+.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            4433333554  356666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.5e-17  Score=153.50  Aligned_cols=171  Identities=23%  Similarity=0.309  Sum_probs=135.0

Q ss_pred             cccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822          235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD  314 (497)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  314 (497)
                      ++++.+++++|.+. .++.  ...+++|++|++++|.+.+..+  +..+++|++|++++|.+.. . ..+..+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred             CcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence            36677777777665 3332  3568899999999999876544  8888999999999998873 3 3478889999999


Q ss_pred             CccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc
Q 037822          315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN  394 (497)
Q Consensus       315 l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  394 (497)
                      +++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+ ++. + ..+++|+.|++++|.++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~-l-~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-L-AGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh-h-cCCCccCEEECCCCcCC
Confidence            999998743  4678889999999999998743  678889999999999999884 433 3 34899999999999998


Q ss_pred             cCCCcccCCCCCCCEEEccCCcCcCCC
Q 037822          395 GTIPPELCKLPALHILDLSHNNLSGII  421 (497)
Q Consensus       395 ~~~~~~l~~l~~L~~L~l~~n~i~~~~  421 (497)
                      + ++ .+..+++|+.|++++|++....
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             C-Ch-hhccCCCCCEEECcCCcccCCc
Confidence            4 44 4888999999999999988543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=7.4e-18  Score=146.12  Aligned_cols=152  Identities=16%  Similarity=0.249  Sum_probs=84.8

Q ss_pred             ccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCC
Q 037822          305 SNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLS  384 (497)
Q Consensus       305 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  384 (497)
                      ..+++|+.|++++|.+. ..+ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+.. +++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCC
Confidence            44555666666666655 223 3555556666666655442  2234455555555555555555433333332 55555


Q ss_pred             EEEccCcccccCCCcccCCCCCCCEEEccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccccccccccc
Q 037822          385 ILRLRSNYFNGTIPPELCKLPALHILDLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLV  463 (497)
Q Consensus       385 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  463 (497)
                      .|++++|++++..+..+..+++|++|++++|+ +. .+|                                 .+..+++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~---------------------------------~l~~l~~L  161 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM---------------------------------PLKTLPEL  161 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG---------------------------------GGGGCSSC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH---------------------------------hhcCCCCC
Confidence            55555555554344445555555555555554 33 221                                 23556777


Q ss_pred             CEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          464 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       464 ~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      +.|++++|.+++. + .+..+++|++|++++|+|
T Consensus       162 ~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          162 KSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             CEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            8888888888753 3 578888888888888875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=3.5e-18  Score=160.91  Aligned_cols=285  Identities=16%  Similarity=0.124  Sum_probs=148.7

Q ss_pred             CccEEEcCCCCCcccCCccccC-CCCCCEEECCCCccc--ccCCccccCCCCCCEEECcCCcCcccCCccCCC-------
Q 037822           18 LLEKLELGFNQLNGDLPSSLGY-LKNLRYLELWHNSFV--GSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQ-------   87 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~-l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-------   87 (497)
                      +++.|.++++ +.......+.. +++|++|||++|++.  ...+.   .++.++.+.+..+.   ....+|.+       
T Consensus        26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred             ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccccccc
Confidence            6888888775 22111123444 778999999988876  22221   22234555555553   33455666       


Q ss_pred             -CCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc----CCCCCCccc
Q 037822           88 -LSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ----LGPKFPTWL  162 (497)
Q Consensus        88 -l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~l  162 (497)
                       +++|++|++.+ .++. ++..+|.+|++|+.+.+..+.+.    .-...++..+.++..+......    .......+|
T Consensus        99 g~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~i~----~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKTAP----NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             ECTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSSCC----EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             ccCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCCcc----ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence             77888888877 6654 45557777777777777764322    1122333344444444433311    111112234


Q ss_pred             cCCCCcc-EEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEe
Q 037822          163 RNQTELT-TLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLY  241 (497)
Q Consensus       163 ~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~  241 (497)
                      ..+..|+ .+.+....   ..+..+....                                         ....+++.+.
T Consensus       173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~-----------------------------------------~~~~~~~~l~  208 (329)
T 3sb4_A          173 IEGEPLETTIQVGAMG---KLEDEIMKAG-----------------------------------------LQPRDINFLT  208 (329)
T ss_dssp             EESCCCEEEEEECTTC---CHHHHHHHTT-----------------------------------------CCGGGCSEEE
T ss_pred             ccccccceeEEecCCC---cHHHHHhhcc-----------------------------------------cCccccceEE
Confidence            4444444 23222111   1111111000                                         0011223333


Q ss_pred             cccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCC-EEECccCcc
Q 037822          242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLY-ILDMSNNSL  320 (497)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~i  320 (497)
                      +.+.-.. .....+...+++|+.+++++|.++.....+|.++++|+++++.+| +......+|.++++|+ .+++.+ .+
T Consensus       209 ~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          209 IEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             EEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             EeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence            3222110 111111123667777777777676666666777777777777665 5545556666777776 777766 55


Q ss_pred             cccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEe
Q 037822          321 SGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD  362 (497)
Q Consensus       321 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  362 (497)
                      +...+.+|..|++|+++++.++.+....+.+|.+|++|+.+.
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            545556666677777777666666655555666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.6e-17  Score=144.21  Aligned_cols=133  Identities=25%  Similarity=0.262  Sum_probs=69.4

Q ss_pred             CccEEEcccCcceeccc-ccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822          261 FLTDLDISFNSLNGSVS-KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL  339 (497)
Q Consensus       261 ~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  339 (497)
                      .+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34455555555544322 23445555555555555555444445555555555555555555444444555555555555


Q ss_pred             ecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc
Q 037822          340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN  394 (497)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  394 (497)
                      ++|.+.+..+..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCCEEECCSCCEE
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCCEEEecCcCCc
Confidence            55555544455555555555555555555533233332 2555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=6e-17  Score=143.80  Aligned_cols=141  Identities=22%  Similarity=0.298  Sum_probs=94.7

Q ss_pred             ccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCC
Q 037822          286 LLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD  365 (497)
Q Consensus       286 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  365 (497)
                      .+.++++++.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456777777766 5554433  6777777777777766666777777777777777777644445567777777777777


Q ss_pred             CcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCC
Q 037822          366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGM  431 (497)
Q Consensus       366 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L  431 (497)
                      |.+. .++...+..+++|+.|++++|+++ .+|..+..+++|++|++++|++....+..+..+++|
T Consensus        98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A           98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            7776 455444444777777777777776 566667777777777777777775544444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.5e-17  Score=144.11  Aligned_cols=152  Identities=16%  Similarity=0.227  Sum_probs=97.7

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .++.|++|++++|.+. ..+ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            4566777777777666 223 4666677777777777554  23356667777777777777765556666777777777


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCc-CcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      ++++|.+.+..+..+..+++|++|++++|. +. .++ .+. .+++|+.|++++|++++ ++ .+..+++|++|++++|+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            777777765555666677777777777776 54 444 233 36777777777777763 33 56667777777777777


Q ss_pred             Cc
Q 037822          417 LS  418 (497)
Q Consensus       417 i~  418 (497)
                      |.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            65

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=8.8e-18  Score=169.69  Aligned_cols=191  Identities=22%  Similarity=0.325  Sum_probs=146.5

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      .+..+.+..+.+.+..+.   ..++.|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++
T Consensus        22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            555666766666543332   4678899999999988743  357888999999999998874333  788899999999


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      ++|.+.+ + ..+..+++|++|++++|.+.+  ...+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+.+
T Consensus        95 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           95 DENKIKD-L-SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CSSCCCC-C-TTSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCC
T ss_pred             cCCCCCC-C-hhhccCCCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCC
Confidence            9998874 3 368888899999999998874  2467888999999999998874 4 3333 48899999999998885


Q ss_pred             CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccccc
Q 037822          396 TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGS  444 (497)
Q Consensus       396 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  444 (497)
                      ..+  +..+++|+.|+|++|++.+.  ..+..+++|+.|++++|++...
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            444  88888999999999988864  4688888888888888877543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=6.2e-17  Score=163.52  Aligned_cols=178  Identities=22%  Similarity=0.307  Sum_probs=140.3

Q ss_pred             cccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822          235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD  314 (497)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  314 (497)
                      ..|+.|++++|.+. .++.  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.. .+ .+..+++|+.|+
T Consensus        43 ~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            36677777777765 3332  3578899999999999886544  8889999999999998873 33 688899999999


Q ss_pred             CccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc
Q 037822          315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN  394 (497)
Q Consensus       315 l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  394 (497)
                      +++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  + ..+++|+.|++++|.++
T Consensus       116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L-AGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G-TTCTTCCEEECCSSCCC
T ss_pred             ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h-ccCCCCCEEECcCCCCC
Confidence            999998743  4588899999999999998744  678889999999999999985444  3 34899999999999998


Q ss_pred             cCCCcccCCCCCCCEEEccCCcCcCCCCccccCC
Q 037822          395 GTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF  428 (497)
Q Consensus       395 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l  428 (497)
                      + + ..+..+++|+.|+|++|++.+.....+..+
T Consensus       189 ~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          189 D-L-RALAGLKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             B-C-GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             C-C-hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence            5 3 468899999999999999986544444433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=1.1e-16  Score=142.11  Aligned_cols=135  Identities=19%  Similarity=0.185  Sum_probs=86.1

Q ss_pred             CCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEec
Q 037822          284 QQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL  363 (497)
Q Consensus       284 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  363 (497)
                      ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            55566666666655544555566666666666666665444445566666666666666666444455566677777777


Q ss_pred             CCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822          364 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       364 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      ++|.+. .+|..+.. +++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus       120 s~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            777766 66655543 77777777777777754445567777777777777777643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=5.1e-17  Score=152.94  Aligned_cols=290  Identities=10%  Similarity=-0.016  Sum_probs=172.9

Q ss_pred             CCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEeccc
Q 037822          165 QTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD  244 (497)
Q Consensus       165 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~  244 (497)
                      +++++.|.++++- .......+....++|+.|++++|.+...                     ......++.+.......
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~---------------------~~~~~~~~~~~~~~~~~   81 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMY---------------------SGKAGTYPNGKFYIYMA   81 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCE---------------------EESSSSSGGGCCEEECT
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEe---------------------cCccccccccccccccc
Confidence            4567888887642 1122223333235677777777776510                     00111111222233333


Q ss_pred             CcccccCChhhhcC--------CCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECc
Q 037822          245 NSFSGPIPRDFGQK--------IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMS  316 (497)
Q Consensus       245 ~~~~~~~~~~~~~~--------~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  316 (497)
                      +    .++...+..        +++|+++++.+ .++.....+|.+|++|+++++++|.+....+.+|..+.++..+...
T Consensus        82 ~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~  156 (329)
T 3sb4_A           82 N----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG  156 (329)
T ss_dssp             T----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred             c----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence            3    233344445        78888888887 7776777778888888888888887766666777777666666655


Q ss_pred             cCcc----cccCCcccccccCCc-EEEeeccee-eeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccC
Q 037822          317 NNSL----SGEIPESIGSLLSVR-FLILCNNHI-SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS  390 (497)
Q Consensus       317 ~n~i----~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~  390 (497)
                      ....    ......+|..+.+|+ .+.+..... .......-....+++.+.+.++-.. .....+...+++|+.+++.+
T Consensus       157 ~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~  235 (329)
T 3sb4_A          157 SSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISK  235 (329)
T ss_dssp             CTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTT
T ss_pred             chhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCC
Confidence            5321    112334455555665 333332211 0000000112344555555544221 22223333477888888888


Q ss_pred             cccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCc-ccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822          391 NYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMK-VEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS  469 (497)
Q Consensus       391 n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  469 (497)
                      |+++.....+|..+++|+++++.+| +..+.+.+|.+|++|+ .+.++. .+.        ......|.++++|++|+++
T Consensus       236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~--------~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT--------AIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC--------EECTTTTTTCTTEEEEEEC
T ss_pred             CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce--------EEchhhhhCCccCCEEEeC
Confidence            7777555567888888888888877 6656667788888887 777766 321        2233456778899999999


Q ss_pred             CCcccccCChhhhccCCCCeEEC
Q 037822          470 SNNLSGEMPVELTRLIHLGTLNL  492 (497)
Q Consensus       470 ~n~~~~~~~~~l~~l~~L~~l~l  492 (497)
                      .|.++...+..|.++++|+++..
T Consensus       306 ~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          306 GDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             SSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCccCccchhhhcCCcchhhhcc
Confidence            99999888889999999999863

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=1.7e-16  Score=143.88  Aligned_cols=168  Identities=21%  Similarity=0.288  Sum_probs=121.6

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      ++..++++++.+.+ ++  ....+++|++|++++|.+... + .+..+++|++|++++|.+.+ .+. +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence            67777788877763 22  124678888888888888743 3 57778888888888888874 333 778888888888


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      ++|++++. +. +.. ++|++|++++|.+++ . ..+..+++|+.|++++|++. .++ .+. .+++|+.|++++|++++
T Consensus        93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~-~~~-~l~-~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLK-SIV-MLG-FLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCC-BCG-GGG-GCTTCCEEECTTSCCCB
T ss_pred             CCCccCCc-Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCC-CCh-HHc-cCCCCCEEECCCCcCcc
Confidence            88888743 22 222 788888888888864 2 35777888888888888887 344 233 37888888888888875


Q ss_pred             CCCcccCCCCCCCEEEccCCcCcCC
Q 037822          396 TIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       396 ~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      .  ..+..+++|+.|++++|++...
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            4  5677788888888888888754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=1.4e-16  Score=144.47  Aligned_cols=163  Identities=18%  Similarity=0.233  Sum_probs=88.5

Q ss_pred             EEEccCCccccCCC-CCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822          218 TVDLSSNSFEGPLP-LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL  296 (497)
Q Consensus       218 ~l~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~  296 (497)
                      .++++++.+.+... ..+++++.|++++|.+. .++ . ...+++|++|++++|.+.+..+  +..+++|++|++++|.+
T Consensus        23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             HHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence            34444444443331 12346666666666655 333 2 2356666666666666654333  55666666666666666


Q ss_pred             ecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhH
Q 037822          297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI  376 (497)
Q Consensus       297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  376 (497)
                      .+ .+.. .. ++|+.|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+.  ..+
T Consensus        98 ~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l  168 (263)
T 1xeu_A           98 KN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGL  168 (263)
T ss_dssp             SC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred             CC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHh
Confidence            52 3322 22 5666666666666532  2355666666666666666532  2455666666666666666533  222


Q ss_pred             hhhCCCCCEEEccCccccc
Q 037822          377 GESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       377 ~~~~~~L~~L~l~~n~~~~  395 (497)
                      . .+++|+.|++++|++++
T Consensus       169 ~-~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          169 T-RLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             T-TCCCCCEEEEEEEEEEC
T ss_pred             c-cCCCCCEEeCCCCcccC
Confidence            2 35666666666666653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.63  E-value=2.9e-14  Score=137.55  Aligned_cols=335  Identities=11%  Similarity=0.008  Sum_probs=182.0

Q ss_pred             CCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccCh
Q 037822           28 QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITE  107 (497)
Q Consensus        28 ~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  107 (497)
                      .++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+ +.. +..
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~-i~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKS-IGV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE-ECT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eee-ecc
Confidence            466677778889999999998754 65566778889999999998765 55566778888888888877655 332 344


Q ss_pred             hhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhh
Q 037822          108 THFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFW  187 (497)
Q Consensus       108 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  187 (497)
                      .+|.++..++......      .......++..+.+|+.+.+.+.. ......+|..+++|+.+++..+ +.......|.
T Consensus       134 ~aF~~~~~~~~~~~~~------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~  205 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEG------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFA  205 (394)
T ss_dssp             TTTTTCCCSEEECCTT------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred             eeeecccccccccCcc------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhc
Confidence            4777776544433322      112234567778888888886542 3344567888899998888765 2222233333


Q ss_pred             hcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEc
Q 037822          188 QLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDI  267 (497)
Q Consensus       188 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  267 (497)
                      .. ..|+.+.+..+... .....                                              .....|+.+.+
T Consensus       206 ~~-~~L~~i~~~~~~~~-i~~~~----------------------------------------------~~~~~l~~i~i  237 (394)
T 4fs7_A          206 EC-ILLENMEFPNSLYY-LGDFA----------------------------------------------LSKTGVKNIII  237 (394)
T ss_dssp             TC-TTCCBCCCCTTCCE-ECTTT----------------------------------------------TTTCCCCEEEE
T ss_pred             cc-cccceeecCCCceE-eehhh----------------------------------------------cccCCCceEEE
Confidence            22 35555444332211 00000                                              11233334433


Q ss_pred             ccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeee
Q 037822          268 SFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE  347 (497)
Q Consensus       268 ~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~  347 (497)
                      .... ......++..+..++.+.+..+... .....|..+..++.+......+   ...++..+.+|+.+.+..+ +...
T Consensus       238 p~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I  311 (394)
T 4fs7_A          238 PDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFI  311 (394)
T ss_dssp             CTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred             CCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-ccee
Confidence            3221 1122334444455555555443222 3333444455555554443322   2234455555555555443 3323


Q ss_pred             CCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccC
Q 037822          348 VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN  427 (497)
Q Consensus       348 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~  427 (497)
                      ...+|.+|++|+.+++..+ +. .+....+.+|++|+.+.+..+ ++.....+|.+|++|+.+++..+ +. ....+|.+
T Consensus       312 ~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~  386 (394)
T 4fs7_A          312 GEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFED  386 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCT
T ss_pred             chhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecC
Confidence            4445556666666666433 33 444444445666666666544 33333455666666666666543 22 12235666


Q ss_pred             CCCCcc
Q 037822          428 FSGMKV  433 (497)
Q Consensus       428 l~~L~~  433 (497)
                      |++|+.
T Consensus       387 c~~L~~  392 (394)
T 4fs7_A          387 TTKFKW  392 (394)
T ss_dssp             TCEEEE
T ss_pred             CCCCcE
Confidence            665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=5.4e-18  Score=170.23  Aligned_cols=122  Identities=20%  Similarity=0.247  Sum_probs=69.1

Q ss_pred             CCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCC
Q 037822          358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPD  437 (497)
Q Consensus       358 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  437 (497)
                      |+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus       443 L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            555555555555 3443 22 2555555555555555 445555555555555555555553 33 45555555555555


Q ss_pred             CCcccccceeeeeCccccccccccccCEEEccCCcccccCCh---hhhccCCCCeEEC
Q 037822          438 SVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV---ELTRLIHLGTLNL  492 (497)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~l~l  492 (497)
                      +|.+....       .+..++.+++|+.|++++|.+++.+|.   .+..+|+|+.|++
T Consensus       517 ~N~l~~~~-------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSA-------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSS-------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCC-------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            55543221       023345567778889999988866542   2445889998875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.63  E-value=2.1e-14  Score=138.51  Aligned_cols=335  Identities=12%  Similarity=0.009  Sum_probs=226.9

Q ss_pred             ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeee
Q 037822           53 FVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIF  132 (497)
Q Consensus        53 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  132 (497)
                      ++.+-..+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ ++. +...+|.++..|+.+.+...     ...
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~c~~L~~i~~p~~-----l~~  130 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKM-IGRCTFSGCYALKSILLPLM-----LKS  130 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCCCCCCTT-----CCE
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceE-ccchhhcccccchhhcccCc-----eee
Confidence            45566688999999999999754 77677889999999999999866 543 55668999999999887662     222


Q ss_pred             cccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCcccc
Q 037822          133 NISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG  212 (497)
Q Consensus       133 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  212 (497)
                      ....++..+...+.......  ......+|..+++|+.+.+.++... .....|.. +.+|+.+.+..+ +         
T Consensus       131 i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~-c~~L~~i~l~~~-~---------  196 (394)
T 4fs7_A          131 IGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSG-CGKLKSIKLPRN-L---------  196 (394)
T ss_dssp             ECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTT-CTTCCBCCCCTT-C---------
T ss_pred             ecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccC-CCCceEEEcCCC-c---------
Confidence            22333444433332222222  2233467889999999999765421 22333332 235555544332 1         


Q ss_pred             ccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEee
Q 037822          213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS  292 (497)
Q Consensus       213 ~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  292 (497)
                                                         . .+....+..++.|+.+.+..+... . ........+|+.+.+.
T Consensus       197 -----------------------------------~-~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip  238 (394)
T 4fs7_A          197 -----------------------------------K-IIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIP  238 (394)
T ss_dssp             -----------------------------------C-EECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEEC
T ss_pred             -----------------------------------e-EeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEEC
Confidence                                               1 222233345666776666655432 1 2233445789999886


Q ss_pred             cceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccC
Q 037822          293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI  372 (497)
Q Consensus       293 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  372 (497)
                      ..- .......+..+..++.+.+..+... .....+..+..++.+......+   ....+..+.+|+.+.+.++ +. .+
T Consensus       239 ~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I  311 (394)
T 4fs7_A          239 DSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FI  311 (394)
T ss_dssp             TTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EE
T ss_pred             CCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc-ee
Confidence            543 3245567888999999999887554 6677888999999988876654   3457888999999999765 54 66


Q ss_pred             ChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCc
Q 037822          373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS  452 (497)
Q Consensus       373 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  452 (497)
                      ....+.++++|+.+++..+ ++.....+|.+|.+|+.+.+..+ +..+...+|.+|++|+.+.++.+--         ..
T Consensus       312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~---------~~  380 (394)
T 4fs7_A          312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLE---------QY  380 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGG---------GG
T ss_pred             chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCE---------Eh
Confidence            6777777999999999754 55445678999999999999877 6656778999999999988764421         11


Q ss_pred             cccccccccccCEE
Q 037822          453 EYVFYTTLYLVNLM  466 (497)
Q Consensus       453 ~~~~~~~~~~L~~L  466 (497)
                       ...+..+++|+++
T Consensus       381 -~~~F~~c~~L~~I  393 (394)
T 4fs7_A          381 -RYDFEDTTKFKWI  393 (394)
T ss_dssp             -GGGBCTTCEEEEE
T ss_pred             -hheecCCCCCcEE
Confidence             1235677888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=3.3e-15  Score=128.65  Aligned_cols=115  Identities=23%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             CEEECccCcccccCCcccccccCCcEEEeecceeeeeCCc-ccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEcc
Q 037822          311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR  389 (497)
Q Consensus       311 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  389 (497)
                      +.+++++++++ .+|..+.  +++++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+.. +++|+.|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECC
Confidence            45666666654 3333222  2556666666655533332 2455555555555555555333333332 5555555555


Q ss_pred             CcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCC
Q 037822          390 SNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFS  429 (497)
Q Consensus       390 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~  429 (497)
                      +|++++..+..|..+++|++|++++|++++..|..+..++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence            5555544444455555555555555555544444443333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.7e-15  Score=127.57  Aligned_cols=131  Identities=22%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             CccEEEeecceee-cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEec
Q 037822          285 QLLTLVISNNNLS-GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL  363 (497)
Q Consensus       285 ~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  363 (497)
                      +|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            3344444444333 22333333344444444444444322  33344444444444444443323333333444444444


Q ss_pred             CCCcCcccCCh-hHhhhCCCCCEEEccCcccccCCC---cccCCCCCCCEEEccCCcCc
Q 037822          364 GDNQLSGNIPA-WIGESMPSLSILRLRSNYFNGTIP---PELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       364 ~~~~i~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~i~  418 (497)
                      ++|.+. .++. ..+..+++|+.|++++|++++..+   ..+..+++|++|++++|.+.
T Consensus       103 s~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            444444 2211 111124444444444444442222   13444555555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=1.5e-16  Score=164.75  Aligned_cols=120  Identities=27%  Similarity=0.295  Sum_probs=57.2

Q ss_pred             CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhC
Q 037822          301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM  380 (497)
Q Consensus       301 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  380 (497)
                      +..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+. .+|..+.. +
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-C  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-G
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-C
Confidence            344444555555555555554 33333344555555555555554 44444555555555555555554 44444433 4


Q ss_pred             CCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccc
Q 037822          381 PSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV  425 (497)
Q Consensus       381 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l  425 (497)
                      ++|+.|++++|.++ .+|..|..+++|++|+|++|++++..|..+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            55555555555554 444445555555555555555554444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=3e-15  Score=128.85  Aligned_cols=133  Identities=25%  Similarity=0.305  Sum_probs=102.0

Q ss_pred             cceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc-cccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK-SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       237 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      -+.++++++.+. .+|..+   .+.+++|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        10 ~~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            356677777665 566543   34788888888888755543 4777888888888888888766778888888888888


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCC
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP  373 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~  373 (497)
                      ++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..+
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            8888887777778888888888888888887777788888888888888888775544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=6.2e-15  Score=124.14  Aligned_cols=131  Identities=19%  Similarity=0.252  Sum_probs=103.8

Q ss_pred             cCCCCCEEECccCccc-ccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCC
Q 037822          306 NISSLYILDMSNNSLS-GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLS  384 (497)
Q Consensus       306 ~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  384 (497)
                      .+++|++|++++|.+. +..+..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+. .+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCC
Confidence            3578999999999997 56677788999999999999999754  7788999999999999999855665544 499999


Q ss_pred             EEEccCcccccCC-CcccCCCCCCCEEEccCCcCcCCCC---ccccCCCCCcccCCCCC
Q 037822          385 ILRLRSNYFNGTI-PPELCKLPALHILDLSHNNLSGIIP---PCVGNFSGMKVEPPDSV  439 (497)
Q Consensus       385 ~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~~  439 (497)
                      .|++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|+++.|
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            9999999998532 2678899999999999999985544   35555555544443333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=1.8e-17  Score=166.43  Aligned_cols=120  Identities=20%  Similarity=0.266  Sum_probs=59.9

Q ss_pred             ccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCC
Q 037822          286 LLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD  365 (497)
Q Consensus       286 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  365 (497)
                      |+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            455555555554 2333 555555555555555555 444455555555555555555542 33 455555555555555


Q ss_pred             CcCcccC-ChhHhhhCCCCCEEEccCcccccCCCc---ccCCCCCCCEEE
Q 037822          366 NQLSGNI-PAWIGESMPSLSILRLRSNYFNGTIPP---ELCKLPALHILD  411 (497)
Q Consensus       366 ~~i~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~  411 (497)
                      |.+.+.. |..+.. +++|+.|++++|++++..+.   .+..+++|+.|+
T Consensus       518 N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGGGGG-CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHHHhc-CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            5555332 444433 55555555555555532221   112355555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=1.3e-13  Score=132.29  Aligned_cols=126  Identities=14%  Similarity=0.085  Sum_probs=64.8

Q ss_pred             cCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCc
Q 037822           38 GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLK  117 (497)
Q Consensus        38 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  117 (497)
                      ..+..++.+.+.++ ++.+...+|.+. +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++. +...+|.+|++|+
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-I~~~aF~~c~~L~  183 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-LKEDIFYYCYNLK  183 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-ECSSTTTTCTTCC
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-ehHHHhhCcccCC
Confidence            34456666666543 333445566654 5777776655 554555566663 577777765 3443 3444666677777


Q ss_pred             eEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeec
Q 037822          118 ELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN  175 (497)
Q Consensus       118 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~  175 (497)
                      .+.+..+.+.     .++.....+.+|+.+.+..+ +......+|..+++|+.+++..
T Consensus       184 ~l~l~~n~l~-----~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          184 KADLSKTKIT-----KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             EEECTTSCCS-----EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             eeecCCCcce-----EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            6666653211     12222222334444444322 2233334455555666555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.5e-15  Score=123.79  Aligned_cols=104  Identities=25%  Similarity=0.312  Sum_probs=61.3

Q ss_pred             CccEEEcCCCCCc-ccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822           18 LLEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL   96 (497)
Q Consensus        18 ~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   96 (497)
                      +|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            6666777777665 45555666666666666666666543  45666666666666666666445555555666666666


Q ss_pred             CCCccccccChhhhhcCCCCceEeccC
Q 037822           97 SENQWEGIITETHFRNLSNLKELALNK  123 (497)
Q Consensus        97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~  123 (497)
                      ++|.+++......+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence            666665421112344444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=125.09  Aligned_cols=102  Identities=18%  Similarity=0.244  Sum_probs=74.0

Q ss_pred             cEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccC
Q 037822          335 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH  414 (497)
Q Consensus       335 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  414 (497)
                      ++++++++.++ .+|..+  .++|++|++++|.+. .+|..+. .+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            56778888776 555544  357888888888887 6775444 488888888888888866666788888888888888


Q ss_pred             CcCcCCCCccccCCCCCcccCCCCCcc
Q 037822          415 NNLSGIIPPCVGNFSGMKVEPPDSVKY  441 (497)
Q Consensus       415 n~i~~~~~~~l~~l~~L~~L~l~~~~~  441 (497)
                      |.+++..+..|..+++|+.|++++|.+
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCC
Confidence            888877776776666665555544444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=4.6e-15  Score=122.22  Aligned_cols=126  Identities=21%  Similarity=0.262  Sum_probs=74.0

Q ss_pred             CCCCEEECccCccc-ccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEE
Q 037822          308 SSLYILDMSNNSLS-GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSIL  386 (497)
Q Consensus       308 ~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  386 (497)
                      ++++.|++++|.+. +..+..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.+|..+. .+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence            45566666666555 34444555566666666666666533  4556666666677766666643444333 36677777


Q ss_pred             EccCcccccC-CCcccCCCCCCCEEEccCCcCcCCCC---ccccCCCCCcccCC
Q 037822          387 RLRSNYFNGT-IPPELCKLPALHILDLSHNNLSGIIP---PCVGNFSGMKVEPP  436 (497)
Q Consensus       387 ~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l  436 (497)
                      ++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            7777776642 22556667777777777777765444   34555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=3.3e-13  Score=129.59  Aligned_cols=183  Identities=11%  Similarity=0.121  Sum_probs=116.0

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      +|+.+++.+|.+. .++...+. ..+|+.+.+..+ +......+|.++++|+.+.+..+ +......+|.. .+|+.+.+
T Consensus       181 ~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          181 NLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             TCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred             cCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence            3444444444443 33333333 456677776643 55556666777777777777654 33344455555 56777777


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceee-----eeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccC
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHIS-----GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS  390 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~  390 (497)
                      . +.++.....+|..|++|+.+++.++.+.     .....+|.+|++|+.+.+.+ .+. .+....+.+|++|+.+.+..
T Consensus       256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECT
T ss_pred             C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECc
Confidence            3 4455455667777777777777776553     34556778888888888874 355 66666666688888888855


Q ss_pred             cccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCC
Q 037822          391 NYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF  428 (497)
Q Consensus       391 n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l  428 (497)
                      + ++.....+|..+ +|+.+++++|.+....+..|.++
T Consensus       333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            4 544455677888 88888888887765555556555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=1.5e-15  Score=157.31  Aligned_cols=154  Identities=23%  Similarity=0.382  Sum_probs=114.4

Q ss_pred             ChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccc
Q 037822          252 PRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSL  331 (497)
Q Consensus       252 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~  331 (497)
                      +...+..++.|+.|++++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3344467888999999999987 55666668899999999999988 78888899999999999999998 678889999


Q ss_pred             cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEE
Q 037822          332 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILD  411 (497)
Q Consensus       332 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  411 (497)
                      ++|++|+|++|.++ .+|..+..+++|+.|++++|.+.+.+|..+.........+++++|.+++.+|.      .|+.|+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~  365 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE  365 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence            99999999999987 67888999999999999999998777766544222233477888888866654      455566


Q ss_pred             ccCC
Q 037822          412 LSHN  415 (497)
Q Consensus       412 l~~n  415 (497)
                      ++.|
T Consensus       366 l~~n  369 (727)
T 4b8c_D          366 INTD  369 (727)
T ss_dssp             ----
T ss_pred             eecc
Confidence            6665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=6.6e-14  Score=118.89  Aligned_cols=130  Identities=19%  Similarity=0.209  Sum_probs=88.8

Q ss_pred             CcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEcc
Q 037822          334 VRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS  413 (497)
Q Consensus       334 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  413 (497)
                      .+.++++++.+. .+|..+  .++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            467788888776 444433  368888888888887 5555444457888888888888885555567788888888888


Q ss_pred             CCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822          414 HNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG  475 (497)
Q Consensus       414 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  475 (497)
                      +|++++..+..+..+++|+.|++++|.+..        ..+..+..+++|++|++++|.++.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS--------VPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceE--------eCHHHhcCCcccCEEEecCCCeec
Confidence            888886666667777777776666666532        122233455666666666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.53  E-value=1.8e-12  Score=125.01  Aligned_cols=134  Identities=10%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             cccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccccc
Q 037822          275 SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN  354 (497)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  354 (497)
                      ....+|..+..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|..|.+|+.+++..+ ++.....+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            44455666666666666544332 344556666666666664 2333344455666666666666543 33344455666


Q ss_pred             CCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822          355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN  416 (497)
Q Consensus       355 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  416 (497)
                      |.+|+.+.+..+ ++ .+....+.+|++|+.+++.++....   .++..+..|+.+.+..+.
T Consensus       333 C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          333 CEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             CCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            666666666433 33 4555555556666666665554321   234455555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=9.6e-14  Score=119.37  Aligned_cols=109  Identities=25%  Similarity=0.294  Sum_probs=55.5

Q ss_pred             CCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEE
Q 037822          308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILR  387 (497)
Q Consensus       308 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  387 (497)
                      +++++|++++|.++ .++..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEE
Confidence            34555555555554 33344555555555555555555444444555555555555555555 23222222355555555


Q ss_pred             ccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822          388 LRSNYFNGTIPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       388 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      +++|.++...+..|..+++|+.|++++|++.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            5555555333334555566666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.5e-13  Score=116.64  Aligned_cols=130  Identities=19%  Similarity=0.199  Sum_probs=77.7

Q ss_pred             cEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC
Q 037822          287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN  366 (497)
Q Consensus       287 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  366 (497)
                      +.++++++.+. .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            45555555554 333322  256666666666666444455566666666666666666444445566666777777777


Q ss_pred             cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822          367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      .++ .++...+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             Ccc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            666 44443333366777777777776644334456667777777777776644

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3.8e-14  Score=120.21  Aligned_cols=104  Identities=21%  Similarity=0.254  Sum_probs=41.9

Q ss_pred             CCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh--hHhhhCCCCCEE
Q 037822          309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA--WIGESMPSLSIL  386 (497)
Q Consensus       309 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~~~~~~~~L~~L  386 (497)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .++.  .+. .+++|+.|
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLA-SLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGG-GCTTCCEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhh-cCCCCCEE
Confidence            444444444444422  23344444444444444444222222244444444444444443 2332  122 24444444


Q ss_pred             EccCcccccCCCcc----cCCCCCCCEEEccCCcC
Q 037822          387 RLRSNYFNGTIPPE----LCKLPALHILDLSHNNL  417 (497)
Q Consensus       387 ~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~i  417 (497)
                      ++++|+++ ..+..    +..+++|+.|++++|.+
T Consensus       119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            44444443 22221    34444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=5.6e-14  Score=119.18  Aligned_cols=128  Identities=16%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             ccccCCCCCEEECccCcccccCCcccccc-cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCC
Q 037822          303 LWSNISSLYILDMSNNSLSGEIPESIGSL-LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP  381 (497)
Q Consensus       303 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  381 (497)
                      .+..+++|++|++++|.+.. .+. +..+ ++|++|++++|.+++.  ..+..+++|+.|++++|.+. .++..++..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            35567889999999998874 443 4444 4999999999999865  67888999999999999998 56655655599


Q ss_pred             CCCEEEccCcccccCCCc--ccCCCCCCCEEEccCCcCcCCCCcc----ccCCCCCcccCCC
Q 037822          382 SLSILRLRSNYFNGTIPP--ELCKLPALHILDLSHNNLSGIIPPC----VGNFSGMKVEPPD  437 (497)
Q Consensus       382 ~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~----l~~l~~L~~L~l~  437 (497)
                      +|+.|++++|++. .++.  .+..+++|+.|++++|++.. .|..    +..+++|+.|+++
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCC
Confidence            9999999999997 4554  78889999999999999984 3432    4444444443333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.45  E-value=1.8e-11  Score=118.01  Aligned_cols=129  Identities=12%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             ccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822          299 EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE  378 (497)
Q Consensus       299 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  378 (497)
                      ....+|..+..|+.+.+..+... ....+|..+++|+.+.+.. .+......+|.+|.+|+.+.+..+ ++ .+....+.
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~  331 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFA  331 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhh
Confidence            34455666677777766554332 4455666666666666643 333344456666666666666543 33 44444555


Q ss_pred             hCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccC
Q 037822          379 SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP  435 (497)
Q Consensus       379 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  435 (497)
                      +|.+|+.+.+..+ ++.....+|.+|++|+.+++.++....   ..+..+..|+.+.
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~  384 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP  384 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred             CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence            5666666666433 332333456666666666666554321   2344444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.9e-15  Score=129.81  Aligned_cols=86  Identities=20%  Similarity=0.313  Sum_probs=34.9

Q ss_pred             cccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCC
Q 037822          279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM  358 (497)
Q Consensus       279 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  358 (497)
                      .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++ ..+..+..+++|++|++++|.+++ ++ .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            34444444444444444432 23 3444444444444444443 223333333444444444444432 11 23334444


Q ss_pred             CEEecCCCcCc
Q 037822          359 DSLDLGDNQLS  369 (497)
Q Consensus       359 ~~L~l~~~~i~  369 (497)
                      +.|++++|.+.
T Consensus       118 ~~L~l~~N~i~  128 (198)
T 1ds9_A          118 RVLYMSNNKIT  128 (198)
T ss_dssp             SEEEESEEECC
T ss_pred             CEEECCCCcCC
Confidence            44444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=2.2e-12  Score=108.44  Aligned_cols=105  Identities=24%  Similarity=0.291  Sum_probs=90.3

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +.++++++++.++. +|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46899999999984 565553  899999999999998888899999999999999999997777778999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSE  126 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~  126 (497)
                      +|++++. +...|..+++|+.|++++|.+
T Consensus        87 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           87 DNQLKSI-PRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SSCCCCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccCEe-CHHHhcCCCCCCEEEeCCCCC
Confidence            9999874 444788889888888888644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=2.7e-15  Score=130.05  Aligned_cols=136  Identities=21%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             cCcCCccEEEeecceeecccCc------ccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccccc
Q 037822          281 CNLQQLLTLVISNNNLSGEIPR------LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN  354 (497)
Q Consensus       281 ~~l~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  354 (497)
                      .....++.++++.+.+.+..+.      .+..+++|++|++++|.+.+ .+ .+..+++|++|++++|.+. .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344555555555555544444      78889999999999999985 55 7888999999999999998 67777777


Q ss_pred             CCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCC-cccCCCCCCCEEEccCCcCcCCCC
Q 037822          355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP-PELCKLPALHILDLSHNNLSGIIP  422 (497)
Q Consensus       355 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~  422 (497)
                      +++|+.|++++|.+. .++ .+. .+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|
T Consensus        92 ~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           92 ADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             CCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            889999999999988 455 343 48899999999999884221 367889999999999999875544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=2.9e-12  Score=107.65  Aligned_cols=82  Identities=24%  Similarity=0.271  Sum_probs=36.2

Q ss_pred             cEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccC
Q 037822          335 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH  414 (497)
Q Consensus       335 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  414 (497)
                      ++++++++.++ .+|..+  .++|+.|++++|.+.+..+..+. .+++|+.|++++|++++..+..|..+++|++|++++
T Consensus        12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            44555555544 233322  24455555555555422222222 244555555555554433333344445555555555


Q ss_pred             CcCcCC
Q 037822          415 NNLSGI  420 (497)
Q Consensus       415 n~i~~~  420 (497)
                      |++.+.
T Consensus        88 N~l~~~   93 (170)
T 3g39_A           88 NQLKSI   93 (170)
T ss_dssp             SCCCCC
T ss_pred             CccCEe
Confidence            554433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=4.4e-12  Score=106.89  Aligned_cols=104  Identities=23%  Similarity=0.325  Sum_probs=87.8

Q ss_pred             ccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCC
Q 037822           19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE   98 (497)
Q Consensus        19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   98 (497)
                      -+.+++++++++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|+++...+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999997 5565554  8999999999999988888999999999999999999976666688999999999999


Q ss_pred             CccccccChhhhhcCCCCceEeccCccc
Q 037822           99 NQWEGIITETHFRNLSNLKELALNKQSE  126 (497)
Q Consensus        99 n~l~~~~~~~~~~~l~~L~~L~l~~~~~  126 (497)
                      |++++ ++...+..+++|+.|++++|.+
T Consensus        91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 NHLKS-IPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SCCCC-CCTTTTTTCTTCSEEECCSSCB
T ss_pred             Cccce-eCHHHhccccCCCEEEeCCCCc
Confidence            99987 4444688888888888888643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=4.8e-12  Score=106.67  Aligned_cols=87  Identities=24%  Similarity=0.262  Sum_probs=79.6

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      +|++|++++|++++..+..|..+++|++|++++|++.+..+..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            89999999999998889999999999999999999997666678999999999999999996666669999999999999


Q ss_pred             CCccccc
Q 037822           98 ENQWEGI  104 (497)
Q Consensus        98 ~n~l~~~  104 (497)
                      +|.+...
T Consensus       114 ~N~~~c~  120 (174)
T 2r9u_A          114 NNPWDCE  120 (174)
T ss_dssp             SSCBCTT
T ss_pred             CCCcccc
Confidence            9998753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=3.2e-14  Score=135.27  Aligned_cols=164  Identities=13%  Similarity=0.060  Sum_probs=85.8

Q ss_pred             CccEEEcCCCCCcccCCccccCC-----CCCCEEECCCCcccccCCccc-cCCCCCCEEECcCCcCcccCCccC-----C
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYL-----KNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENF-----G   86 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~-----~   86 (497)
                      +|++|++++|.++......+...     ++|++|++++|.++......+ ..+++|++|++++|.+++.....+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            56677777777664433333322     567777777776653322222 234566777777777664333333     2


Q ss_pred             CCCCCCEEEcCCCccccccC---hhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCC----CC
Q 037822           87 QLSAVEVLDLSENQWEGIIT---ETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPK----FP  159 (497)
Q Consensus        87 ~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~----~~  159 (497)
                      ..++|++|++++|.+++...   ...+..++.|++|++++|.+.......+...+...++|++|+|++|.++..    ++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            35667777777776653211   113455666666666665544333333344444444555555555555421    22


Q ss_pred             ccccCCCCccEEEeeccccccc
Q 037822          160 TWLRNQTELTTLVLNNVRISDT  181 (497)
Q Consensus       160 ~~l~~l~~L~~L~l~~~~~~~~  181 (497)
                      ..+...++|+.|++++|.+++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHhCCCCCEEeccCCCCCHH
Confidence            2333445555555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=6.6e-14  Score=133.11  Aligned_cols=174  Identities=16%  Similarity=0.063  Sum_probs=125.3

Q ss_pred             CCCCCEEECccCcccccCCccccc-----ccCCcEEEeecceeeeeCCccc-ccCCCCCEEecCCCcCcccCChhHhh--
Q 037822          307 ISSLYILDMSNNSLSGEIPESIGS-----LLSVRFLILCNNHISGEVPPSL-KNCSMMDSLDLGDNQLSGNIPAWIGE--  378 (497)
Q Consensus       307 ~~~L~~L~l~~n~i~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~--  378 (497)
                      ++.|+.|++++|.++......+..     .++|++|++++|.++......+ ..+++|+.|++++|.+++.....+..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            468999999999988554444433     2699999999999864333222 34678999999999998655544433  


Q ss_pred             --hCCCCCEEEccCcccccC----CCcccCCCCCCCEEEccCCcCcCCC----CccccCCCCCcccCCCCCcccccceee
Q 037822          379 --SMPSLSILRLRSNYFNGT----IPPELCKLPALHILDLSHNNLSGII----PPCVGNFSGMKVEPPDSVKYEGSLQVV  448 (497)
Q Consensus       379 --~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~  448 (497)
                        ..++|+.|++++|.++..    ++..+..+++|++|+|++|.+++..    +..+...+.|+.|++++|.+.......
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              257899999999998752    3344577889999999999997542    455677888999999999875432111


Q ss_pred             eeCccccccccccccCEEEccCCcccccCChhhhcc
Q 037822          449 LKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL  484 (497)
Q Consensus       449 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l  484 (497)
                          ....+...++|++|+|++|.+++.....+..+
T Consensus       231 ----l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          231 ----LARAAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             ----HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             ----HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence                11233456889999999999987766666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.25  E-value=2.6e-09  Score=102.38  Aligned_cols=146  Identities=10%  Similarity=0.066  Sum_probs=70.8

Q ss_pred             ccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCC
Q 037822          280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD  359 (497)
Q Consensus       280 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  359 (497)
                      +..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +.......|.+|++|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            334444444444332 11123334444555555555443 33233444555555555555432 2223334555566666


Q ss_pred             EEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCC
Q 037822          360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGM  431 (497)
Q Consensus       360 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L  431 (497)
                      .+.+.++.+. .+....+.+|++|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+|..+
T Consensus       290 ~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          290 KVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             EEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             cccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            6666555554 455545555666666666433 33233345666666666666543 443444456555433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.19  E-value=5e-09  Score=100.33  Aligned_cols=130  Identities=12%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             ccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCC
Q 037822          303 LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPS  382 (497)
Q Consensus       303 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~  382 (497)
                      .+..+.+++.+.+..+ +......++..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +. .++...+.+|++
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence            3444455555555433 22233344555555555555443 22233444555555555555432 22 334444444555


Q ss_pred             CCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCC
Q 037822          383 LSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPD  437 (497)
Q Consensus       383 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  437 (497)
                      |+.+.+.++.++.....+|.+|.+|+.+.+..+ +..+...+|.+|++|+.+.+.
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            555555555444333345555555555555433 333334455555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=2.4e-10  Score=108.21  Aligned_cols=105  Identities=22%  Similarity=0.200  Sum_probs=89.0

Q ss_pred             cEEEcCCC-CCcccCCccccCCCCCCEEECCC-CcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           20 EKLELGFN-QLNGDLPSSLGYLKNLRYLELWH-NSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        20 ~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ..++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45789988 888 4666 99999999999996 99987777889999999999999999998888889999999999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENI  128 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  128 (497)
                      +|++++ ++...+..++ |+.|++.+|.+.+
T Consensus        89 ~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALES-LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSC-CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccce-eCHHHcccCC-ceEEEeeCCCccC
Confidence            999987 4444677666 9999999976653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.6e-10  Score=107.92  Aligned_cols=93  Identities=23%  Similarity=0.150  Sum_probs=66.5

Q ss_pred             CCccccCCCCCCCCCCccEEEcCC-CCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccC
Q 037822            3 VSDFIDGLSECTNSSLLEKLELGF-NQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKF   81 (497)
Q Consensus         3 ~~~~l~~l~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~   81 (497)
                      ||. +..++      +|++|+|++ |.+++..+..|..+++|++|+|++|.+.+..|.+|.++++|++|+|++|+++...
T Consensus        24 ip~-l~~~~------~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           24 LHH-LPGAE------NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             TTT-SCSCS------CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             cCC-CCCCC------CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            455 55555      778888875 7777666677777888888888888777777777777888888888888777544


Q ss_pred             CccCCCCCCCCEEEcCCCcccc
Q 037822           82 PENFGQLSAVEVLDLSENQWEG  103 (497)
Q Consensus        82 ~~~~~~l~~L~~L~l~~n~l~~  103 (497)
                      +..+..++ |+.|++.+|.+..
T Consensus        97 ~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           97 WKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             STTTCSCC-CCEEECCSSCCCC
T ss_pred             HHHcccCC-ceEEEeeCCCccC
Confidence            44454444 7888888777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=1.1e-10  Score=109.95  Aligned_cols=12  Identities=17%  Similarity=0.002  Sum_probs=6.6

Q ss_pred             CCCCccEEEccc
Q 037822          258 KIPFLTDLDISF  269 (497)
Q Consensus       258 ~~~~L~~L~l~~  269 (497)
                      .+++|+.|.+..
T Consensus       137 ~l~~L~~L~l~~  148 (362)
T 2ra8_A          137 KFAHFEGLFWGD  148 (362)
T ss_dssp             HHTTCSEEEECC
T ss_pred             hcchhhheeecC
Confidence            345666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=1.2e-09  Score=102.95  Aligned_cols=64  Identities=16%  Similarity=0.246  Sum_probs=27.8

Q ss_pred             CCCCCEEecCCCcCcccCChhHhh--hCCCCCEEEccCcccccC----CCcccCCCCCCCEEEccCCcCc
Q 037822          355 CSMMDSLDLGDNQLSGNIPAWIGE--SMPSLSILRLRSNYFNGT----IPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       355 ~~~L~~L~l~~~~i~~~~~~~~~~--~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      +|+|+.|++.+|.+.+..+..++.  .+++|+.|+++.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            455555555555544333222221  234455555555544431    1112233445555555555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=5.4e-09  Score=88.75  Aligned_cols=66  Identities=20%  Similarity=0.170  Sum_probs=35.4

Q ss_pred             CCCceEeccCccccceeeecccCCCCCCccccEEEc--cCCcCCCC----CCccccCCCCccEEEeeccccc
Q 037822          114 SNLKELALNKQSENISLIFNISSHWIPPFKLTFINI--RSCQLGPK----FPTWLRNQTELTTLVLNNVRIS  179 (497)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~  179 (497)
                      +.|++|++++|.+.......+...+...+.|++|++  ++|.++..    +...+...++|++|++++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344444444443333333334444444445666666  55655532    3344556678888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=1.1e-08  Score=86.81  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=28.4

Q ss_pred             ccccEEEccCCcCCCC----CCccccCCCCccEEEe--eccccccccCchhhhc---ccCccEEEccccccc
Q 037822          142 FKLTFINIRSCQLGPK----FPTWLRNQTELTTLVL--NNVRISDTIPDWFWQL---DLTLDELDVAYNELS  204 (497)
Q Consensus       142 ~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~  204 (497)
                      +.|++|+|++|.+...    +...+...++|++|++  ++|.+.+.....+...   .+.|++|++++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3455555555555431    2333444455555555  4455543322222111   134555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=2.7e-08  Score=82.10  Aligned_cols=82  Identities=11%  Similarity=0.035  Sum_probs=41.2

Q ss_pred             ccEEEcCCCCCcccCCccccCCCCCCEEECCCCc-ccccCCccccCC----CCCCEEECcCCc-CcccCCccCCCCCCCC
Q 037822           19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNS-FVGSIPPSIGNL----TFLKELYLSSNQ-MNGKFPENFGQLSAVE   92 (497)
Q Consensus        19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~~l~~L~   92 (497)
                      |++||+++|.|++.....+..+++|++|++++|. +++.--..+..+    ++|++|++++|. +++.....+..+++|+
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~  142 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK  142 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence            5555555555554444445555555555555553 333222233332    245555555553 5544444445555555


Q ss_pred             EEEcCCCc
Q 037822           93 VLDLSENQ  100 (497)
Q Consensus        93 ~L~l~~n~  100 (497)
                      +|++++|.
T Consensus       143 ~L~L~~c~  150 (176)
T 3e4g_A          143 YLFLSDLP  150 (176)
T ss_dssp             EEEEESCT
T ss_pred             EEECCCCC
Confidence            55555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=8.3e-08  Score=79.15  Aligned_cols=84  Identities=11%  Similarity=0.029  Sum_probs=50.1

Q ss_pred             CCcEEEeecceeeeeCCcccccCCCCCEEecCCCc-CcccCChhHhh---hCCCCCEEEccCcc-cccCCCcccCCCCCC
Q 037822          333 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGE---SMPSLSILRLRSNY-FNGTIPPELCKLPAL  407 (497)
Q Consensus       333 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~---~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L  407 (497)
                      .|++|++++|.++......+..|++|++|++++|. +++.....+..   .+++|+.|++++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45666666666554444455566667777776663 65554444443   12467777777764 654433445667777


Q ss_pred             CEEEccCCc
Q 037822          408 HILDLSHNN  416 (497)
Q Consensus       408 ~~L~l~~n~  416 (497)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=6.7e-08  Score=86.13  Aligned_cols=83  Identities=19%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             cCCCCCCEEECCCCcccc--cCCccccCCCCCCEEECcCCcCcccCCccCCCCC--CCCEEEcCCCccccccC------h
Q 037822           38 GYLKNLRYLELWHNSFVG--SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLS--AVEVLDLSENQWEGIIT------E  107 (497)
Q Consensus        38 ~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~------~  107 (497)
                      ..+++|++|+|++|.+.+  .+|..+..+++|++|+|++|.+++.  ..+..+.  +|++|++++|.+.+.++      .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            468899999999999986  3456677899999999999999854  2333333  99999999999876443      2


Q ss_pred             hhhhcCCCCceEecc
Q 037822          108 THFRNLSNLKELALN  122 (497)
Q Consensus       108 ~~~~~l~~L~~L~l~  122 (497)
                      ..+..+++|+.|+-.
T Consensus       245 ~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          245 AIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHCTTCCEESSC
T ss_pred             HHHHHCcccCeECCc
Confidence            357888999988754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=1.4e-06  Score=77.58  Aligned_cols=79  Identities=25%  Similarity=0.288  Sum_probs=63.0

Q ss_pred             CCCccEEEcCCCCCcc--cCCccccCCCCCCEEECCCCcccccCCccccCCC--CCCEEECcCCcCcccCC-------cc
Q 037822           16 SSLLEKLELGFNQLNG--DLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLT--FLKELYLSSNQMNGKFP-------EN   84 (497)
Q Consensus        16 ~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~-------~~   84 (497)
                      +++|++|++++|.+++  .++..+..+++|++|+|++|.+.+.  ..+..+.  +|++|++++|++.+..|       ..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4599999999999987  3456678999999999999999854  2344444  99999999999986544       23


Q ss_pred             CCCCCCCCEEEc
Q 037822           85 FGQLSAVEVLDL   96 (497)
Q Consensus        85 ~~~l~~L~~L~l   96 (497)
                      +..+++|+.||=
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            677899998874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=1.1e-05  Score=67.90  Aligned_cols=117  Identities=11%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             ccCCCCCCEEECcCC-cCcc----cCCccCCCCCCCCEEEcCCCcccccc---ChhhhhcCCCCceEeccCccccceeee
Q 037822           61 IGNLTFLKELYLSSN-QMNG----KFPENFGQLSAVEVLDLSENQWEGII---TETHFRNLSNLKELALNKQSENISLIF  132 (497)
Q Consensus        61 l~~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~  132 (497)
                      +.+-+.|++|++++| .+.+    .+.+++...+.|++|+|++|.+.+.-   ...++..-+.|+.|++++|.+......
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            334455555555553 4442    12233444555555555555554220   011333444555555555544444444


Q ss_pred             cccCCCCCCccccEEEccCC---cCCC----CCCccccCCCCccEEEeeccc
Q 037822          133 NISSHWIPPFKLTFINIRSC---QLGP----KFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus       133 ~~~~~~~~~~~L~~l~l~~~---~~~~----~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      .+.+++...+.|++|+|+++   .+..    .+.+.+..-+.|+.|+++.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            44555555555666666543   2221    123344445666666665443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=7.9e-06  Score=68.71  Aligned_cols=115  Identities=10%  Similarity=0.047  Sum_probs=59.8

Q ss_pred             CCCCCCEEECCCC-cccc----cCCccccCCCCCCEEECcCCcCcccCCcc----CCCCCCCCEEEcCCCccccccC---
Q 037822           39 YLKNLRYLELWHN-SFVG----SIPPSIGNLTFLKELYLSSNQMNGKFPEN----FGQLSAVEVLDLSENQWEGIIT---  106 (497)
Q Consensus        39 ~l~~L~~L~l~~~-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---  106 (497)
                      .-+.|+.|+++++ .+..    .+.+++...+.|++|+|++|.+++....+    +...+.|++|+|++|.|.+.-.   
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3456666666654 4432    13445555666666666666666433322    3345666666666666653211   


Q ss_pred             hhhhhcCCCCceEeccCc---cccceeeecccCCCCCCccccEEEccCCc
Q 037822          107 ETHFRNLSNLKELALNKQ---SENISLIFNISSHWIPPFKLTFINIRSCQ  153 (497)
Q Consensus       107 ~~~~~~l~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  153 (497)
                      ..++..-+.|++|+++++   .+.......+.+.+..-+.|+.++++.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            123444455666666543   12222223344555555667777766544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.90  E-value=0.0021  Score=50.31  Aligned_cols=38  Identities=29%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             ccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822          460 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       460 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i  497 (497)
                      .++|+.|+|++|.|+...++.|..+++|++|+|++||+
T Consensus        30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            34678899999999877777888999999999999985

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.65  E-value=0.0039  Score=48.72  Aligned_cols=56  Identities=21%  Similarity=0.368  Sum_probs=34.2

Q ss_pred             EEECCCCccc-ccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccc
Q 037822           45 YLELWHNSFV-GSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWE  102 (497)
Q Consensus        45 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  102 (497)
                      +++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666554 13443221  25777777777777555556667777777777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	497
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.4 bits (223), Expect = 2e-20
 Identities = 65/383 (16%), Positives = 123/383 (32%), Gaps = 35/383 (9%)

Query: 40  LKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN 99
           L       L   +   ++  +  +L  +  L      +     +    L+ +  ++ S N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 100 QWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFP 159
           Q   I      +NL+ L ++ +N             +       LT + + + Q+    P
Sbjct: 77  QLTDIT---PLKNLTKLVDILMNNN------QIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 160 TWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATV 219
                      L  N +     +        L+          L+               
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS--- 184

Query: 220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
              +   +  +     N+  L   +N  S   P      +  L +L ++ N L      +
Sbjct: 185 ---NKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GT 236

Query: 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
           + +L  L  L ++NN +S   P   S ++ L  L +  N +S   P  +  L ++  L L
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 292

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
             N +    P    N   +  L L  N +S   P     S+  L  L   +N    +   
Sbjct: 293 NENQLEDISPI--SNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFANNKV--SDVS 345

Query: 400 ELCKLPALHILDLSHNNLSGIIP 422
            L  L  ++ L   HN +S + P
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 75/369 (20%), Positives = 131/369 (35%), Gaps = 28/369 (7%)

Query: 7   IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTF 66
           +      T+   +  L+     +       + YL NL  +   +N      P  + NLT 
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTK 89

Query: 67  LKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFR--------NLSNLKE 118
           L ++ +++NQ+    P           L  ++      +               +S++  
Sbjct: 90  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 149

Query: 119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRI 178
           L+     + +S    ++         T   +          + L   T L +L+  N +I
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 209

Query: 179 SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NV 237
           SD  P         LDEL +  N+L   I           +DL++N      PL     +
Sbjct: 210 SDITPLGILT---NLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKL 265

Query: 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS 297
           T+L L  N  S   P             ++  N         I NL+ L  L +  NN+S
Sbjct: 266 TELKLGANQISNISPLAG-----LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM 357
              P   S+++ L  L  +NN +S     S+ +L ++ +L   +N IS   P  L N + 
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 374

Query: 358 MDSLDLGDN 366
           +  L L D 
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 3e-18
 Identities = 78/410 (19%), Positives = 137/410 (33%), Gaps = 51/410 (12%)

Query: 14  TNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
           T+++L EK++    + N     S   L  +  L+      + SI   +  L  L ++  S
Sbjct: 17  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFS 74

Query: 74  SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFN 133
           +NQ+    P     L+ +  + ++ NQ   I    +  NL+ L          +      
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 134 ISSHWIPP-------FKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWF 186
             +              L+ +            T L+    LTTL   ++  +       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDN 245
                 L+ L    N++S   P  +       + L+ N  +    L S  N+T L L +N
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLD-ELSLNGNQLKDIGTLASLTNLTDLDLANN 251

Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWS 305
             S   P      +  LT+L +  N ++     +       L L  +       I  L +
Sbjct: 252 QISNLAPL---SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 306 NISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365
               L  L +  N++S   P  + SL  ++ L   NN +S     SL N + ++ L  G 
Sbjct: 309 ----LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
           NQ+S   P                           L  L  +  L L+  
Sbjct: 361 NQISDLTP---------------------------LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 47/217 (21%)

Query: 281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC 340
             L  L +L+ +NN +S   P     +++L  L ++ N L      ++ SL ++  L L 
Sbjct: 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 400
           NN IS   P  L   + +  L LG NQ+S   P     ++ +L +     N         
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL-----NENQLEDISP 302

Query: 401 LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL 460
           +  L  L  L L  NN+S I P  V + + ++                            
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR--------------------------- 333

Query: 461 YLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                +  ++N +S      L  L ++  L+   N +
Sbjct: 334 -----LFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 8e-13
 Identities = 55/259 (21%), Positives = 94/259 (36%), Gaps = 13/259 (5%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
              L+L  N++          LKNL  L L +N      P +   L  L+ LYLS NQ+ 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
               +       ++ L + EN+   +     F  L+ +  + L       S I N +   
Sbjct: 93  ELPEKMPKT---LQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
           +   KL++I I    +         +   LT L L+  +I+         L+  L +L +
Sbjct: 149 MK--KLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLN-NLAKLGL 202

Query: 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFN---VTKLYLRDNSFSGPIPRDF 255
           ++N +S     SL           +N+    +P    +   +  +YL +N+ S     DF
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 256 GQKIPFLTDLDISFNSLNG 274
                       S  SL  
Sbjct: 263 CPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 28/260 (10%)

Query: 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319
           P    LD+  N +         NL+ L TL++ NN +S   P  ++ +  L  L +S N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL-SGNIPAWIGE 378
           L  E+PE +    +++ L +  N I+          + M  ++LG N L S  I     +
Sbjct: 91  LK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 379 SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDS 438
            M  LS +R+       TIP  L   P+L  L L  N ++ +    +   + +       
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 439 VKYEGSLQVVLKGSEYVFYTTLYLVNLM---------------DLSSNNLSG------EM 477
                     L  + ++    L    L+                L +NN+S         
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 478 PVELTRLIHLGTLNLSRNHL 497
           P   T+      ++L  N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 48/261 (18%), Positives = 95/261 (36%), Gaps = 14/261 (5%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG-FRFPATVDLSSN 224
            +   L L N +I++     F  L   L  L +  N++S   P +         + LS N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 225 SFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVSKSICNL 283
             +         + +L + +N  +      F       + +L  +    +G  + +   +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 284 QQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
           ++L  + I++ N++  IP+      SL  L +  N ++     S+  L ++  L L  N 
Sbjct: 150 KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG------TI 397
           IS     SL N   +  L L +N+L              + ++ L +N  +         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 398 PPELCKLPALHILDLSHNNLS 418
           P    K  +   + L  N + 
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 9e-13
 Identities = 48/258 (18%), Positives = 84/258 (32%), Gaps = 10/258 (3%)

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
                + L+  RIS      F            +            G      +DLS N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 226 FEGPLPLWSF----NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSIC 281
               +   +F     +  L+L D      +     + +  L  L +  N+L      +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 282 NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN 341
           +L  L  L +  N +S    R +  + SL  L +  N ++   P +   L  +  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 342 NHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL 401
           N++S     +L     +  L L DN    +           L   R  S+    ++P  L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 402 CKLPALHILDLSHNNLSG 419
                  +  L+ N+L G
Sbjct: 269 AGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 39/239 (16%), Positives = 75/239 (31%), Gaps = 6/239 (2%)

Query: 189 LDLTLDELDVAYNELSGSIPNSLGF----RFPATVDLSSNSFEGPLPLWSFNVTKLYLRD 244
           +      + +  N +S     S                    +         + +L L D
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 245 NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLW 304
           N+    +       +  L  L +    L          L  L  L + +N L       +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 305 SNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 364
            ++ +L  L +  N +S     +   L S+  L+L  N ++   P + ++   + +L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPP 423
            N LS  +P      + +L  LRL  N +             L     S + +   +P 
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 5e-11
 Identities = 50/290 (17%), Positives = 91/290 (31%), Gaps = 32/290 (11%)

Query: 33  LPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVE 92
           +P  +      + + L  N        S      L  L+L SN +       F  L+ +E
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 93  VLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSC 152
            LDLS+N     +    F  L  L  L L+       L       +     L ++ ++  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLD----RCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 153 QLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG 212
            L        R+   LT L L+  RIS      F  L  +LD L +  N ++   P++  
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHA-- 196

Query: 213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSL 272
                                            +    +P +    +  L  L ++ N  
Sbjct: 197 -------------------FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 273 NGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSG 322
                ++      L     S++ +   +P     ++   +  ++ N L G
Sbjct: 238 VCD-CRARPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 19  LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
           L+ L L  N L      +   L NL +L L  N        +   L  L  L L  N++ 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 79  GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
              P  F  L  +  L L  N     +       L  L+ L LN    +   + +  +  
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN----DNPWVCDCRARP 245

Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQT 166
           +  + L      S ++    P  L  + 
Sbjct: 246 LWAW-LQKFRGSSSEVPCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 5/149 (3%)

Query: 281 CNLQQLLTLVISNNNLSGEIPRLWSNI-SSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
           C  +  +T       L   +P     I ++   + +  N +S     S  +  ++  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
            +N ++     +    ++++ LDL DN    ++       +  L  L L         P 
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 400 ELCKLPALHILDLSHNNLSGIIPPCVGNF 428
               L AL  L L  N L  +      + 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDL 152

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 59/295 (20%), Positives = 100/295 (33%), Gaps = 34/295 (11%)

Query: 35  SSLGYLKNLRYLELWHNSFVG--SIPPSIGNLTFLKELYLSSN-QMNGKFPENFGQLSAV 91
            +      +  L+L   +      IP S+ NL +L  LY+     + G  P    +L+ +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 92  EVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRS 151
             L ++                                    I         L  ++   
Sbjct: 104 HYLYITHTNV-----------------------------SGAIPDFLSQIKTLVTLDFSY 134

Query: 152 CQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL 211
             L    P  + +   L  +  +  RIS  IPD +         + ++ N L+G IP + 
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 212 GFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS-FSGPIPRDFGQKIPFLTDLDISFN 270
                A VDLS N  EG   +   +         +  S             L  LD+  N
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254

Query: 271 SLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP 325
            + G++ + +  L+ L +L +S NNL GEIP+   N+    +   +NN      P
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 13/239 (5%)

Query: 262 LTDLDISFNSLNG--SVSKSICNLQQLLTLVISNN-NLSGEIPRLWSNISSLYILDMSNN 318
           + +LD+S  +L     +  S+ NL  L  L I    NL G IP   + ++ L+ L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 319 SLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE 378
           ++SG IP+ +  + ++  L    N +SG +PPS+ +   +  +    N++SG IP   G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 379 SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDS 438
                + + +  N   G IPP    L    +    +            + +  K+    +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 439 VKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
                         +         +N +DL +N + G +P  LT+L  L +LN+S N+L
Sbjct: 232 SLAF----------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 28/241 (11%)

Query: 220 DLSSNSFEGPLPLWSF-----NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 274
           DLS  +   P P+ S       +  LY+   +           K+  L  L I+  +++G
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 275 SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLS- 333
           ++   +  ++ L+TL  S N LSG +P   S++ +L  +    N +SG IP+S GS    
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

Query: 334 VRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG---------------------NI 372
              + +  N ++G++PP+  N ++       +                            
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMK 432
                    +L+ L LR+N   GT+P  L +L  LH L++S NNL G IP   GN     
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294

Query: 433 V 433
           V
Sbjct: 295 V 295

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 10/264 (3%)

Query: 168 LTTLVLNNVRIS--DTIPDWFWQL-DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSN 224
           +  L L+ + +     IP     L  L    +    N +    P          + ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 225 SFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG--QKIPFLTDLDISFNSLNGSVSKSICN 282
           +  G +P +   +  L   D S++            +P L  +    N ++G++  S  +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 283 LQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN 342
             +L T +  + N             +L  +D+S N L G+     GS       I    
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAK 230

Query: 343 HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELC 402
           +        +     ++ LDL +N++ G +P  +   +  L  L +  N   G IP +  
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 403 KLPALHILDLSHNNL--SGIIPPC 424
            L    +   ++N       +P C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 24  LGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFP 82
           L  N++ G LP  L  LK L  L +  N+  G I P  GNL        ++N+     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 55/265 (20%), Positives = 88/265 (33%), Gaps = 48/265 (18%)

Query: 14  TNSSLLEKLELGFNQLNGD--LPSSLGYLKNLRYLELWHN-SFVGSIPPSIGNLTFLKEL 70
           T +  +  L+L    L     +PSSL  L  L +L +    + VG IPP+I  LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 71  YLSSN------------------------QMNGKFPENFGQLSAVEVLDLSENQWEGIIT 106
           Y++                           ++G  P +   L  +  +    N+  G I 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 107 ETHFRNLS------------------NLKELALNKQSENISLIFNISSHWIPPFKLTFIN 148
           +++                           L L     + +++   +S      K T   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 149 IRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIP 208
             +          +     L  L L N RI  T+P    QL   L  L+V++N L G IP
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIP 285

Query: 209 NSLGFRFPATVDLSSNSF--EGPLP 231
                +       ++N      PLP
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 8e-10
 Identities = 51/444 (11%), Positives = 103/444 (23%), Gaps = 44/444 (9%)

Query: 19  LEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSF----VGSIPPSIGNLTFLKELYLS 73
           ++ L++   +L+       L  L+  + + L            I  ++     L EL L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 74  SNQMNGKFPENFGQL-----SAVEVLDLSENQWEGIITETHFRNLSNL------------ 116
           SN++         Q        ++ L L      G         L  L            
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 117 -----KELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTL 171
                 +L      +    +  +   +      +   + S          L         
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 172 VLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSN-----SF 226
               V              L L+   V  +                 + L SN       
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 227 EGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQL 286
               P      ++L        G   +  G     L   +                 + L
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISG 346
              ++        +     + ++      S+          +    +            G
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 347 EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM---PSLSILRLRSNYFNGTIPPELCK 403
                 +  S++  L L D  +S +  + +  ++    SL  L L +N        +L +
Sbjct: 364 L----GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 404 -----LPALHILDLSHNNLSGIIP 422
                   L  L L     S  + 
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 5e-07
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 304 WSNISSLYILDMSNNSLSGEIPESIGSLL----SVRFLILCNNHISGEVPPSL-----KN 354
               S L +L +++  +S     S+ + L    S+R L L NN +       L     + 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 355 CSMMDSLDLGDNQLSGNIPAWIG---ESMPSLSIL 386
             +++ L L D   S  +   +    +  PSL ++
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG----TIPPELCKLPALHILDLS 413
           + SLD+   +LS    A +   +    ++RL            I   L   PAL  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 414 HNNLSGIIPPCVGN 427
            N L  +   CV  
Sbjct: 64  SNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 233 WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG----SVSKSICNLQQLLT 288
                      +++    + +  GQ    L  L ++   ++     S++ ++     L  
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401

Query: 289 LVISNNNLSGEIPR-----LWSNISSLYILDMSNNSLSGEIPESIGSLL 332
           L +SNN L           +      L  L + +   S E+ + + +L 
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 15  NSSLLEKLELGFNQLNGD----LPSSLGYLKNLRYLELWHNSFVGSIPPSIG-----NLT 65
             S+L  L L    ++      L ++L    +LR L+L +N    +    +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 66  FLKELYLSSNQMNGKFPENFGQL 88
            L++L L     + +  +    L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG----SVSKSICNLQQLLTL 289
           S ++  L ++    S     +    +     + +    L       +S ++     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 290 VISNNNLSGEIPR-----LWSNISSLYILDMSNN 318
            + +N L           L +    +  L + N 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 41  KNLRYLELWHNSF----VGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQ-----LSAV 91
             LR L L           S+  ++     L+EL LS+N +         +        +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 92  EVLDLSENQWEGIITE 107
           E L L +  W   + +
Sbjct: 429 EQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 332 LSVRFLILCNNHISG----EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE---SMPSLS 384
           L ++ L +    +S     E+ P L+ C     + L D  L+      I       P+L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQ---VVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 385 ILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC 424
            L LRSN         + +        +   +L       
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 48/423 (11%), Positives = 98/423 (23%), Gaps = 22/423 (5%)

Query: 3   VSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYL---KNLRYLELWHNSFVGSIPP 59
             D    L        L +L L  N+L       +       + +  +L   +   +   
Sbjct: 44  CKDISSALRVNPA---LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

Query: 60  SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
                + L+ L                 L  +    L        +   +    +   E 
Sbjct: 101 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 160

Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
             +             S+         +  +  +  P     L+ ++   T         
Sbjct: 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 220

Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTK 239
                   +         +    ++   P  L                            
Sbjct: 221 IVASKASLRELAL-GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 279

Query: 240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299
                         + G +   L    +                         ++ L+  
Sbjct: 280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 339

Query: 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE----VPPSLKNC 355
              L   IS+  + D     L   + +    L   R L L +  +S      +  +L   
Sbjct: 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLAN 396

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPS----LSILRLRSNYFNGTIPPELCKL----PAL 407
             +  LDL +N L       + ES+      L  L L   Y++  +   L  L    P+L
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

Query: 408 HIL 410
            ++
Sbjct: 457 RVI 459

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 6e-09
 Identities = 50/324 (15%), Positives = 96/324 (29%), Gaps = 23/324 (7%)

Query: 41  KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQ 100
           +    LEL +     S+P    +L     L  S N +  + PE    L ++ V + +   
Sbjct: 38  RQAHELELNNLGL-SSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 101 WEGIITETHFRNLSNLKELALNKQSENISL-IFNISSHWIPPFKLTFINIRSCQLGPKFP 159
              +     +  +SN +   L +   +  L I ++ ++ +        ++     G    
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 160 TWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATV 219
             L     L  L       +         L L          E    + N          
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFL-------TDLDISFNSL 272
           +    +     P       +     +    P    F      +              N+ 
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 273 NGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLL 332
           +  +         L  L +SNN L      L +    L  L  S N L+ E+PE   +L 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLA-EVPELPQNL- 326

Query: 333 SVRFLILCNNHISG--EVPPSLKN 354
             + L +  N +    ++P S+++
Sbjct: 327 --KQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 59/335 (17%), Positives = 104/335 (31%), Gaps = 23/335 (6%)

Query: 10  LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKE 69
           L +C +     +LEL    L+  LP       +L  L    NS    +P    +L  L  
Sbjct: 32  LRDCLDRQA-HELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLV 85

Query: 70  LYLSSNQMNGKFPE-NFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENI 128
              +   ++   P   +  +S  ++  L E Q    +      N S  K   L    E I
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 129 SLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188
           +   N          L F+                  +  + +  NN+            
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 189 LDLTL-------DELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLY 241
           L              D+  +  + ++ ++     P      +            +     
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP 301
           L   + S    R      P L +L++S N L   +      L+    L+ S N+L+ E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVP 320

Query: 302 RLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336
            L     +L  L +  N L  E P+   S+  +R 
Sbjct: 321 EL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 9e-04
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 11/91 (12%)

Query: 339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398
              N  S E+         ++ L++ +N+L       +    P L  L    N+    +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLA-EVP 320

Query: 399 PELCKLPALHILDLSHNNLSGI--IPPCVGN 427
                L     L + +N L     IP  V +
Sbjct: 321 ELPQNL---KQLHVEYNPLREFPDIPESVED 348

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 6/200 (3%)

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVS 277
            V+    +     P    + T L+L +N                LT L++    L     
Sbjct: 14  EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELT---K 69

Query: 278 KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337
             +     +L  +  ++N    +P L   + +L +LD+S N L+     ++  L  ++ L
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129

Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
            L  N +    P  L     ++ L L +N L+      +   + +L  L L+ N    TI
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TI 187

Query: 398 PPELCKLPALHILDLSHNNL 417
           P        L    L  N  
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 31/215 (14%), Positives = 57/215 (26%), Gaps = 12/215 (5%)

Query: 12  ECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELY 71
           E +  +   ++      L   LP  L   K+   L L  N        ++   T L +L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 72  LSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLI 131
           L   ++     +    +     L   +     + +            +     +   SL 
Sbjct: 62  LDRAELTKLQVDGTLPV-----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 132 FNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDL 191
                      +L         L P   T      +L+     N  +++        L+ 
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL---ANNNLTELPAGLLNGLEN 173

Query: 192 TLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSF 226
            LD L +  N L        G        L  N +
Sbjct: 174 -LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 15/192 (7%)

Query: 305 SNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 364
           S ++S   ++    +L+  +P  +        L L  N +      +L   + +  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC 424
             +L+          + +L +   +                     +   +   G +   
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 425 VGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL 484
                             G              T    +  + L++NNL+      L  L
Sbjct: 124 GELQELYLKGNELKTLPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 485 IHLGTLNLSRNH 496
            +L TL L  N 
Sbjct: 172 ENLDTLLLQENS 183

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 20/219 (9%)

Query: 279 SICNLQQLLTLVISNNNLSGEIPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFL 337
            +  +   L +     NL+  +P    ++     IL +S N L      ++     +  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALP---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 338 ILCN-NHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396
            L        +V  +L     +D        L          ++       +  N     
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-----DVSFNRLTSL 115

Query: 397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVF 456
               L  L  L  L L  N L  + P  +     ++     +         +L G     
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG----- 170

Query: 457 YTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
              L  ++ + L  N+L   +P        L    L  N
Sbjct: 171 ---LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 38/264 (14%), Positives = 83/264 (31%), Gaps = 32/264 (12%)

Query: 196 LDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW--SFNVTKLYLRDNSFSGPIPR 253
           LD+    L   +   L  +         +  + PL      F V  + L ++        
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 254 DFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYIL 313
               +   L +L +    L+  +  ++     L+ L +S  +   E        S   + 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISG--------EVPPSLKNCSMMDSLDLGD 365
           +++ +       + +   ++     +   ++SG        ++   ++ C  +  LDL D
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 366 NQLSGNIPAWIGESMPSLSILRL-RSNYFNGTIPPELCKLPALHILDLSH---------- 414
           + +  N        +  L  L L R          EL ++P L  L +            
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 415 -----------NNLSGIIPPCVGN 427
                      ++ + I  P +GN
Sbjct: 245 KEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 33/226 (14%), Positives = 66/226 (29%), Gaps = 10/226 (4%)

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SV 276
           T+DL+  +    +     +   +  R        P         +  +D+S + +   ++
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 277 SKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336
              +    +L  L +    LS  I    +  S+L  L++S  S   E           R 
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN-- 394
             L  +         ++      S  +    LSG         + +L        + +  
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 395 ------GTIPPELCKLPALHILDLSH-NNLSGIIPPCVGNFSGMKV 433
                      E  +L  L  L LS   ++       +G    +K 
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 23/286 (8%)

Query: 46  LELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGII 105
           L+L   +    +   + +   +       + M+    E+F     V+ +DLS +  E   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 106 TETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQ 165
                   S L+ L+L     +  ++  ++ +      L  +N+  C  G          
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS----NLVRLNLSGCS-GFSEFALQTLL 117

Query: 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNS 225
           +  + L   N+       +   Q+ +      +    LSG   N               S
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN------------LQKS 165

Query: 226 FEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISF-NSLNGSVSKSICNLQ 284
               L     N+  L L D+            ++ +L  L +S    +       +  + 
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 285 QLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGS 330
            L TL +      G +  L     +L  L ++ +  +     +IG+
Sbjct: 226 TLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGN 268

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 312 ILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGN 371
           +L +++  L+  +   +  LL V  L L +N +    P      + +  L++     +  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNAL 55

Query: 372 IPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLPALHILDLSHNNLSGI 420
                  ++P L  L L +N    +   + L   P L +L+L  N+L   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 22  LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKF 81
           L L    L       L  L  + +L+L HN     +PP++  L  L+   L ++    + 
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLE--VLQASDNALEN 57

Query: 82  PENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
            +    L  ++ L L  N+ +         +   L  L L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 288 TLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE 347
            L +++ +L+  +  L   +  +  LD+S+N L    P ++ +L  +  L   +N +  E
Sbjct: 2   VLHLAHKDLT-VLCHL-EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL--E 56

Query: 348 VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391
               + N   +  L L +N+L  +       S P L +L L+ N
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 38/335 (11%), Positives = 91/335 (27%), Gaps = 22/335 (6%)

Query: 19  LEKLELGFNQLNGD----LPSSLGYLKNLRYLELWHNSF----VGSIPPSIGNLTFLKEL 70
           +E   L  + +  +    + + L    +++ + L  N+        +  +I +   L+  
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 71  YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISL 130
             S         E    L    +L       +               +  L       + 
Sbjct: 65  EFSDIFTGRVKDEIPEALR--LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 131 IFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLD 190
           + ++  H           I             +N   L +++    R+ +     + +  
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
            +   L                      +       +    L   + T  +L  ++ +  
Sbjct: 183 QSHRLLHTVKM----VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238

Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSK-SICNLQQLLTLVISNNNLSGEIPR-----LW 304
           +      +   L D  +S       V   S      L TL +  N +  +  R     + 
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 305 SNISSLYILDMSNNSLS--GEIPESIGSLLSVRFL 337
             +  L  L+++ N  S   ++ + I  + S R  
Sbjct: 299 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 277 SKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336
           +    N  +   L +    +   I  L + +     +D S+N +     +    L  ++ 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN-- 394
           L++ NN I        +    +  L L +N L          S+ SL+ L +  N     
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 395 -GTIPPELCKLPALHILDLS 413
                  + K+P + +LD  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 4   SDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGN 63
           ++ I+  ++ TN+    +L+L   ++   + +    L     ++   N            
Sbjct: 5   AELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPL 61

Query: 64  LTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
           L  LK L +++N++          L  +  L L+ N    +       +L +L  L + 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 28/218 (12%), Positives = 56/218 (25%), Gaps = 2/218 (0%)

Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSV 276
                 +           N  +L              F         ++  +        
Sbjct: 12  VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 71

Query: 277 SKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336
                  +     +   NNL    P  + N+ +L  L +SN  +           L    
Sbjct: 72  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 131

Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396
           L + +N     +  +       +S+ L  N+           +   L  L L  N     
Sbjct: 132 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE 191

Query: 397 IPPE-LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKV 433
           +P +         ILD+S   +  +    + N   ++ 
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 229

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 9/238 (3%)

Query: 68  KELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSEN 127
           +      +++  + P +         L     +   I     F    +L+++ +++    
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVL 66

Query: 128 ISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFW 187
             +  ++ S+     ++      +               +   +    ++    +     
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 188 QLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNS- 246
              + LD  D                     + L+ N  +              L  +  
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 247 -FSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRL 303
                +P D          LDIS   ++   S  + NL++L     S  NL  ++P L
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLK-KLPTL 241

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 9/168 (5%)

Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS-NNNLSGEIPRLWSNISS 309
           IPRD        T+L ++ N L    S  +      L  +    N L+G  P  +   S 
Sbjct: 23  IPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS 369
           +  L +  N +     +    L  ++ L L +N IS  +P S ++ + + SL+L  N  +
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 370 GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL 417
            N                L         P +   +  + I DL H+  
Sbjct: 140 CNCHLAWFAEWLRK--KSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 15/185 (8%)

Query: 313 LDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI 372
           +D +   L  EIP  I        L+L +N +       L                   I
Sbjct: 13  VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMK 432
                E    +  L+L  N            L  L  L+L  N +S ++P    + + + 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 433 VEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNL 492
                S  +  +                  +    L+        P   +++  +   +L
Sbjct: 130 SLNLASNPFNCN---------CHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDL 177

Query: 493 SRNHL 497
             +  
Sbjct: 178 PHSEF 182

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 15/91 (16%), Positives = 28/91 (30%)

Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
           + C    + +    L     +  L + + Q   ++       +  L  L +  +      
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 398 PPELCKLPALHILDLSHNNLSGIIPPCVGNF 428
           P      P L  L+LS N L  +    V   
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 24/185 (12%), Positives = 57/185 (30%), Gaps = 16/185 (8%)

Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
              K  L+  S +  + ++   ++  +  +  + + +     + I  L  +  L ++ N 
Sbjct: 25  ETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK 79

Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNC 355
           L+         +++L  L       +     S    L     +   ++   ++   +   
Sbjct: 80  LTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 356 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415
            +          L  N    I        +  L       +    L  L  L  L LS N
Sbjct: 135 QLES------LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 416 NLSGI 420
           ++S +
Sbjct: 189 HISDL 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	497
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.59

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1e-25  Score=215.55  Aligned_cols=186  Identities=23%  Similarity=0.317  Sum_probs=115.4

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM  315 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  315 (497)
                      +++.+++++|.+.+..+.   ...++|++|++++|.+.+  ...+..+++|+.+++++|.+++. + .+..+++|+.|++
T Consensus       198 ~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l  270 (384)
T d2omza2         198 NLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL-A-PLSGLTKLTELKL  270 (384)
T ss_dssp             TCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred             ccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCC-C-cccccccCCEeec
Confidence            445555555554432221   245667777777776653  23456667777777777766532 2 3566677777777


Q ss_pred             ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822          316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~  395 (497)
                      +++++++..  .+..++.++.+.+.+|.+.+  ...+..+++++.|++++|++.+ ++. + ..+++|++|++++|++++
T Consensus       271 ~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~-l~~-l-~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         271 GANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-ISP-V-SSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSC-CGG-G-GGCTTCCEEECCSSCCCC
T ss_pred             cCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCC-Ccc-c-ccCCCCCEEECCCCCCCC
Confidence            777765322  35566677777777776652  2346667777777777777763 322 2 237777777777777763


Q ss_pred             CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCC
Q 037822          396 TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSV  439 (497)
Q Consensus       396 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~  439 (497)
                       ++ .+..+++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       344 -l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 -VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             33 46777777777777777775433  677777777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.3e-25  Score=214.97  Aligned_cols=189  Identities=25%  Similarity=0.343  Sum_probs=102.9

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      .++.++.+++++|.+.+..+  ...+++|++|++++|.+..  ...+..+++|+.+++++|.+++..  .+..+++|++|
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  268 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL  268 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEe
Confidence            45555666666655543322  3344555666665555541  223455555555555555554322  24445555555


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL  417 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i  417 (497)
                      +++++.+.+.  ..+..++.++.+++++|.+.+ ++. + ..+++++.|++++|++++. + .+..+++|++|++++|++
T Consensus       269 ~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~-~~~-~-~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         269 KLGANQISNI--SPLAGLTALTNLELNENQLED-ISP-I-SNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCSC-CGG-G-GGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCC
T ss_pred             eccCcccCCC--Ccccccccccccccccccccc-ccc-c-chhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCC
Confidence            5555555421  124445555555555555442 221 1 1245555555555555432 1 244455555555555555


Q ss_pred             cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCC
Q 037822          418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN  495 (497)
Q Consensus       418 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n  495 (497)
                      ++ ++ .                                +..+++|++|++++|.+++..|  +.++++|+.|+|++|
T Consensus       342 ~~-l~-~--------------------------------l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SD-VS-S--------------------------------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-CG-G--------------------------------GGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-Ch-h--------------------------------HcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            42 11 2                                3456777889999999986655  888999999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=1.1e-25  Score=208.81  Aligned_cols=248  Identities=29%  Similarity=0.409  Sum_probs=198.8

Q ss_pred             ccceEecccCcccc--cCChhhhcCCCCccEEEccc-CcceecccccccCcCCccEEEeecceeecccCcccccCCCCCE
Q 037822          236 NVTKLYLRDNSFSG--PIPRDFGQKIPFLTDLDISF-NSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYI  312 (497)
Q Consensus       236 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  312 (497)
                      +++.|+++++.+.+  .+|..+ ..+++|++|++++ |.+.+..|..++++++|++|++++|++.+..+..+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            57777787777765  355655 4788888888886 6777778888888888888888888888777777888888888


Q ss_pred             EECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCC-CEEecCCCcCcccCChhHhhhCCCCCEEEccCc
Q 037822          313 LDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM-DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN  391 (497)
Q Consensus       313 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n  391 (497)
                      +++++|.+....|..+..++.++++++++|.+.+.+|..+..+.++ +.+++++|++.+..+..+.. + ....+++.++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~-l-~~~~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-L-NLAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-C-CCSEEECCSS
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc-c-cccccccccc
Confidence            8888888887788888888888888888888888888888777775 77888888888777765543 3 4457888888


Q ss_pred             ccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCC
Q 037822          392 YFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSN  471 (497)
Q Consensus       392 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  471 (497)
                      ...+.++..+..+++++.+++++|.+.+.+ ..+..+++++.|++++|++.        +..|..++.+++|++|+|++|
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~--------g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY--------GTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCE--------ECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccCccCeec--------ccCChHHhCCCCCCEEECcCC
Confidence            888777888888888888888888887554 46788888888888888874        344556778889999999999


Q ss_pred             cccccCChhhhccCCCCeEECCCCC
Q 037822          472 NLSGEMPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       472 ~~~~~~~~~l~~l~~L~~l~l~~n~  496 (497)
                      .+++.+|. +.++++|+.+++++|+
T Consensus       279 ~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         279 NLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccCCC-cccCCCCCHHHhCCCc
Confidence            99988885 5788999999999886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=4.6e-25  Score=204.54  Aligned_cols=248  Identities=29%  Similarity=0.447  Sum_probs=164.4

Q ss_pred             cccEEEccCCcCCC--CCCccccCCCCccEEEeec-cccccccCchhhhcccCccEEEcccccccccCCccccccCCCEE
Q 037822          143 KLTFINIRSCQLGP--KFPTWLRNQTELTTLVLNN-VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATV  219 (497)
Q Consensus       143 ~L~~l~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l  219 (497)
                      ++++|+|+++.+..  .+|..++++++|++|++++ |.+.+.+|..+..+ ++|++|++++|.+.+..+           
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L-~~L~~L~Ls~N~l~~~~~-----------  118 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECC-----------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc-cccchhhhcccccccccc-----------
Confidence            57777777776664  4677788888888888876 66777777777665 366666666665543222           


Q ss_pred             EccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecc
Q 037822          220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE  299 (497)
Q Consensus       220 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  299 (497)
                                                       .. +...+.|+.+++++|.+....|..+..++.++.+++++|.+.+.
T Consensus       119 ---------------------------------~~-~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~  164 (313)
T d1ogqa_         119 ---------------------------------DF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             ---------------------------------GG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             ---------------------------------cc-ccchhhhcccccccccccccCchhhccCcccceeeccccccccc
Confidence                                             11 23456666667766666666666677777777777777776666


Q ss_pred             cCcccccCCCC-CEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822          300 IPRLWSNISSL-YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE  378 (497)
Q Consensus       300 ~~~~~~~~~~L-~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  378 (497)
                      .|..+..+..+ +.+++++|++++..+..+..+.. ..+++..+...+..+..+..+++++.+++++|.+.+.++. +. 
T Consensus       165 ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-~~-  241 (313)
T d1ogqa_         165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-  241 (313)
T ss_dssp             CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC-
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-cc-
Confidence            66666666554 66777777777666666655533 3577777777666666677777777777777777644442 32 


Q ss_pred             hCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCc
Q 037822          379 SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVK  440 (497)
Q Consensus       379 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~  440 (497)
                      .+++|+.|++++|++++.+|..|..+++|++|+|++|++++.+|+ +.++++|+.+++++|+
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            267777777777777777777777777777777777777766663 4555556555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4e-23  Score=190.60  Aligned_cols=83  Identities=27%  Similarity=0.294  Sum_probs=69.3

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ..+.++.++.+++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+....|.+|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            5788899998888 4465553  689999999999885555678999999999999999887778889999999999999


Q ss_pred             CCcccc
Q 037822           98 ENQWEG  103 (497)
Q Consensus        98 ~n~l~~  103 (497)
                      +|+++.
T Consensus        88 ~n~l~~   93 (305)
T d1xkua_          88 KNQLKE   93 (305)
T ss_dssp             SSCCSB
T ss_pred             CCccCc
Confidence            998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=194.25  Aligned_cols=264  Identities=19%  Similarity=0.176  Sum_probs=157.8

Q ss_pred             CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822          217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL  296 (497)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~  296 (497)
                      +.++.++..++..++..++++++|++++|+++ .++...+..+++|++|++++|.+....+.++..+++|++|++++|++
T Consensus        13 ~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             TEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCCccCCCCCCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            34444444444443333446777777777666 45544445667777777777777666666677777777777777776


Q ss_pred             ecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceee--eeCCcccccCCCCCEEecCCCcCcccCCh
Q 037822          297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS--GEVPPSLKNCSMMDSLDLGDNQLSGNIPA  374 (497)
Q Consensus       297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  374 (497)
                      + .+|..  ..+.++.|++.+|.+.+..+..+.....+..++...+...  ...+..+..+++|+.+++++|.+. .++.
T Consensus        92 ~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          92 K-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             S-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             C-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc
Confidence            6 34432  2356677777777666544445555556666666555432  123345556666667777666665 4444


Q ss_pred             hHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccc
Q 037822          375 WIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEY  454 (497)
Q Consensus       375 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  454 (497)
                      ..   +++|+.|++++|..++..+..+..++.++.|++++|.+.+..+..+.++++|++|++++|++.+.         +
T Consensus       168 ~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l---------p  235 (305)
T d1xkua_         168 GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV---------P  235 (305)
T ss_dssp             SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC---------C
T ss_pred             cc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc---------c
Confidence            32   45666677766666655566666666667777777666666666666666777777766665321         2


Q ss_pred             cccccccccCEEEccCCcccccCChh------hhccCCCCeEECCCCCC
Q 037822          455 VFYTTLYLVNLMDLSSNNLSGEMPVE------LTRLIHLGTLNLSRNHL  497 (497)
Q Consensus       455 ~~~~~~~~L~~L~l~~n~~~~~~~~~------l~~l~~L~~l~l~~n~i  497 (497)
                      ..+..+++|+.|++++|+++......      +..+++|+.|+|++|++
T Consensus       236 ~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            23455666777777777666432222      23456666777766653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=191.36  Aligned_cols=266  Identities=19%  Similarity=0.189  Sum_probs=206.6

Q ss_pred             EEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEee-cceee
Q 037822          219 VDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS-NNNLS  297 (497)
Q Consensus       219 l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~-~n~~~  297 (497)
                      ++.++..+...+..-+.++++|++++|+++ .++...+..++.|++|+++++.+....+..+..++.++.+... .+.+.
T Consensus        16 v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             EECCSSCCSSCCTTCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             EEcCCCCCCccCCCCCCCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            344444444332223347889999999987 6666666789999999999999998888888888999998875 44566


Q ss_pred             cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHh
Q 037822          298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG  377 (497)
Q Consensus       298 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  377 (497)
                      ...+..|+++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+. .++...+
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f  173 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAF  173 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhh
Confidence            556778899999999999999998667777888999999999999998666778889999999999999998 5555555


Q ss_pred             hhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccccc
Q 037822          378 ESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFY  457 (497)
Q Consensus       378 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  457 (497)
                      .++++|+.+++++|++++..|..|..+++|++|++++|++.+..+..|..+++|+.|++++|++.-+.+..         
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~---------  244 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR---------  244 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH---------
T ss_pred             ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch---------
Confidence            56999999999999999888899999999999999999999888888999999999999999875332210         


Q ss_pred             ccccccCEEEccCCcccccCChhhhc--cCCCCeEECCCC
Q 037822          458 TTLYLVNLMDLSSNNLSGEMPVELTR--LIHLGTLNLSRN  495 (497)
Q Consensus       458 ~~~~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~l~l~~n  495 (497)
                      .-...++.+....+.++...|..+.+  +..+..-+|+||
T Consensus       245 ~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l~gc  284 (284)
T d1ozna_         245 PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (284)
T ss_dssp             HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             HHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHCCCc
Confidence            01123445566667776667777665  344444455554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.6e-23  Score=185.81  Aligned_cols=223  Identities=17%  Similarity=0.139  Sum_probs=165.4

Q ss_pred             eEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECc-c
Q 037822          239 KLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMS-N  317 (497)
Q Consensus       239 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~-~  317 (497)
                      .++.++++++ .+|..+   .+.+++|++++|.++...+.+|.++++|++|++++|.+....+..+..++.++.+.+. .
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566666666 666643   4578899999999987777788889999999999988887777777888888888765 4


Q ss_pred             CcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC
Q 037822          318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI  397 (497)
Q Consensus       318 n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  397 (497)
                      +.+....+..+..+++|++|++++|.+....+..+...++|+.+++++|.++ .++...+..+++|+.|++++|++.+..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccc
Confidence            5666566777888888999999888887666667778888888899888887 565555555788888888888888666


Q ss_pred             CcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccc
Q 037822          398 PPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS  474 (497)
Q Consensus       398 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  474 (497)
                      +.+|..+++|+.+++++|++++..|..|.++++|+.|++++|++.+.        .+..++.+++|+.|++++|++.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~--------~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL--------PTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC--------CHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc--------cccccccccccCEEEecCCCCC
Confidence            67788888888888888888877788887777776655555555322        2223344555555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-21  Score=174.28  Aligned_cols=199  Identities=20%  Similarity=0.201  Sum_probs=125.8

Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                      ....+.+++.+++.++. .|..+.  +++++|++++|.++...+..|..+++|++|++++|+++.. + .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            34455566666666663 344332  4677777777777654455667777777777777777632 2 24566777777


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL  417 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i  417 (497)
                      ++++|.+. ..+..+..+++|+.|+++++.+. .++...+..+.+++.|++++|.++...+..+..+++++.+++++|++
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccc-ccccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            77777765 34555666777777777777665 44444444466777777777776654445556667777777777777


Q ss_pred             cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCC
Q 037822          418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNH  496 (497)
Q Consensus       418 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~  496 (497)
                      ++..++.|..++                                +|++|+|++|.++ .+|+++..+++|+.|+|++||
T Consensus       161 ~~~~~~~~~~l~--------------------------------~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         161 TELPAGLLNGLE--------------------------------NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SCCCTTTTTTCT--------------------------------TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cccCcccccccc--------------------------------ccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            655555555544                                4566677777766 556666667777777777766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.5e-21  Score=173.36  Aligned_cols=177  Identities=21%  Similarity=0.188  Sum_probs=95.3

Q ss_pred             CCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822          260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL  339 (497)
Q Consensus       260 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  339 (497)
                      +.+++|++++|.+++..+.+|..+++|++|++++|.++. ++ .++.+++|++|++++|++. ..+..+..+++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            345555555555554444455555555555555555542 22 2344555555555555554 33444555555555555


Q ss_pred             ecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC
Q 037822          340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG  419 (497)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~  419 (497)
                      +++.+.+..+..+..+.+++.|++++|.+. .++...+..+++++.+++++|++++..+..|..+++|++|+|++|+++ 
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             cccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            555555444444555555566666655555 444444444555666666666555444445555566666666666655 


Q ss_pred             CCCccccCCCCCcccCCCCCcc
Q 037822          420 IIPPCVGNFSGMKVEPPDSVKY  441 (497)
Q Consensus       420 ~~~~~l~~l~~L~~L~l~~~~~  441 (497)
                      .+|+.+..+++|+.|++++|++
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccChhHCCCCCCCEEEecCCCC
Confidence            4555555555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=2.4e-17  Score=154.75  Aligned_cols=313  Identities=26%  Similarity=0.302  Sum_probs=177.9

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS   97 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   97 (497)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|+.   ..+|+.|++++|.++ .++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence            6899999999998 45643   578999999999998 66765   458999999999987 3332 1  2579999999


Q ss_pred             CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822           98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR  177 (497)
Q Consensus        98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  177 (497)
                      +|.+.. ++.  +..+++|+.|+++++.+.     ..+   .....+..+.+..+...  ....+..++.++.+.+.++.
T Consensus       107 ~n~l~~-lp~--~~~l~~L~~L~l~~~~~~-----~~~---~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         107 NNQLEK-LPE--LQNSSFLKIIDVDNNSLK-----KLP---DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             SSCCSS-CCC--CTTCTTCCEEECCSSCCS-----CCC---CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSC
T ss_pred             cccccc-ccc--hhhhccceeecccccccc-----ccc---cccccccchhhcccccc--ccccccccccceeccccccc
Confidence            999986 443  578899999999885432     111   22345667777665542  23456777888888888877


Q ss_pred             cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822          178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ  257 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (497)
                      .... +..    ....+.+...++.+. ..+....++.++.+.++++.... .+..                        
T Consensus       174 ~~~~-~~~----~~~~~~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~-~~~~------------------------  222 (353)
T d1jl5a_         174 LKKL-PDL----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL------------------------  222 (353)
T ss_dssp             CSSC-CCC----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC------------------------
T ss_pred             cccc-ccc----ccccccccccccccc-ccccccccccccccccccccccc-cccc------------------------
Confidence            6532 211    113344444444433 33333344555555555554332 2222                        


Q ss_pred             CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822          258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL  337 (497)
Q Consensus       258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  337 (497)
                       ...+..+.+.++.+... +   ...+.+....+..+.+.+ ...   -.......++..+.+.+.    ...+++|++|
T Consensus       223 -~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~-l~~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L  289 (353)
T d1jl5a_         223 -PPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSL----CDLPPSLEEL  289 (353)
T ss_dssp             -CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEE----CCCCTTCCEE
T ss_pred             -ccccccccccccccccc-c---cccccccccccccccccc-ccc---ccchhcccccccCccccc----cccCCCCCEE
Confidence             33344444444443311 1   112333444443333221 000   012233444444444321    1224566666


Q ss_pred             EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEc
Q 037822          338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDL  412 (497)
Q Consensus       338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  412 (497)
                      ++++|.+. .+|.   .+++|+.|++++|+++ .+|..    +++|+.|++++|+++ .+|..   ...|+.|.+
T Consensus       290 ~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~----~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~  351 (353)
T d1jl5a_         290 NVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLR-EFPDI---PESVEDLRM  351 (353)
T ss_dssp             ECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEEC
T ss_pred             ECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc----cCCCCEEECcCCcCC-CCCcc---ccccCeeEC
Confidence            66666665 3443   2456667777777666 55531    456777777777765 44532   234555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.8e-22  Score=197.51  Aligned_cols=388  Identities=17%  Similarity=0.132  Sum_probs=225.9

Q ss_pred             CCccEEEcCCCCCcccC-CccccCCCCCCEEECCCCcccc----cCCccccCCCCCCEEECcCCcCcccC----CccCC-
Q 037822           17 SLLEKLELGFNQLNGDL-PSSLGYLKNLRYLELWHNSFVG----SIPPSIGNLTFLKELYLSSNQMNGKF----PENFG-   86 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~-   86 (497)
                      ++|++||++++++++.. .+.+..++++++|++++|.++.    .++.++..+++|++|++++|++++..    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            37899999999998543 3446778999999999998874    34566788999999999999987422    22333 


Q ss_pred             CCCCCCEEEcCCCcccccc---ChhhhhcCCCCceEeccCccccceeeecccCCCCC-CccccEEEccCCcCCCC----C
Q 037822           87 QLSAVEVLDLSENQWEGII---TETHFRNLSNLKELALNKQSENISLIFNISSHWIP-PFKLTFINIRSCQLGPK----F  158 (497)
Q Consensus        87 ~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~----~  158 (497)
                      ...+|++|++++|.+++..   ....+..++.|++|++++|.+...........+.. .................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            3458999999999987531   12356778999999999876543222222222211 11223333333222111    1


Q ss_pred             CccccCCCCccEEEeeccccccccCch----hhhcccCccEEEcccccccccCCc-----cccccCCCEEEccCCccccC
Q 037822          159 PTWLRNQTELTTLVLNNVRISDTIPDW----FWQLDLTLDELDVAYNELSGSIPN-----SLGFRFPATVDLSSNSFEGP  229 (497)
Q Consensus       159 ~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~  229 (497)
                      ...+...+.++.++++++...+.....    +.........+.+..+.+......     ....+               
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~---------------  226 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA---------------  226 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT---------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccc---------------
Confidence            122334466667776666543221111    111112344455555443211100     00122               


Q ss_pred             CCCCccccceEecccCccccc----CChhhhcCCCCccEEEcccCcceec----ccccccCcCCccEEEeecceeecccC
Q 037822          230 LPLWSFNVTKLYLRDNSFSGP----IPRDFGQKIPFLTDLDISFNSLNGS----VSKSICNLQQLLTLVISNNNLSGEIP  301 (497)
Q Consensus       230 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~  301 (497)
                            .++.+.+.++.+...    .........+.++.+++++|.+...    ....+...+.++.+++++|.+.....
T Consensus       227 ------~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~  300 (460)
T d1z7xw1         227 ------SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  300 (460)
T ss_dssp             ------TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             ------cccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  445555555543211    1122223456777788877776532    22234456778888888777653211


Q ss_pred             cc-----cccCCCCCEEECccCcccccCCcc----cccccCCcEEEeecceeeee----CCcccc-cCCCCCEEecCCCc
Q 037822          302 RL-----WSNISSLYILDMSNNSLSGEIPES----IGSLLSVRFLILCNNHISGE----VPPSLK-NCSMMDSLDLGDNQ  367 (497)
Q Consensus       302 ~~-----~~~~~~L~~L~l~~n~i~~~~~~~----l~~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~~~  367 (497)
                      ..     ......|+.+++++|.++......    +...++|++|++++|.++..    +++.+. ..+.|++|++++|.
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            11     123457888888888776543333    34456888888888887532    222232 46678999999998


Q ss_pred             CcccCChhH---hhhCCCCCEEEccCcccccCCC----cccC-CCCCCCEEEccCCcCcCCCCccc
Q 037822          368 LSGNIPAWI---GESMPSLSILRLRSNYFNGTIP----PELC-KLPALHILDLSHNNLSGIIPPCV  425 (497)
Q Consensus       368 i~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~----~~l~-~l~~L~~L~l~~n~i~~~~~~~l  425 (497)
                      +++.....+   ...+++|+.|++++|+++....    ..+. ....|+.|++.++.+.+.....+
T Consensus       381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             CChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            875432222   2236889999999998875322    2233 34479999999998875544433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=5.9e-17  Score=152.04  Aligned_cols=304  Identities=23%  Similarity=0.322  Sum_probs=167.5

Q ss_pred             CCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEe
Q 037822           41 KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA  120 (497)
Q Consensus        41 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  120 (497)
                      .++++||++++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|++|++++|.++.. +.    -.+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~----lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD----LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS----CCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh----hcccccccc
Confidence            46889999999987 56753   568999999999988 56654   35789999998887642 21    112355555


Q ss_pred             ccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEccc
Q 037822          121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAY  200 (497)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  200 (497)
                      +++                            |.+.. +|. ++.+++|+.++++++.+... +..    ...+..+.+..
T Consensus       105 L~~----------------------------n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~~----~~~l~~l~~~~  149 (353)
T d1jl5a_         105 VSN----------------------------NQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PDL----PPSLEFIAAGN  149 (353)
T ss_dssp             CCS----------------------------SCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CCC----CTTCCEEECCS
T ss_pred             ccc----------------------------ccccc-ccc-hhhhccceeecccccccccc-ccc----cccccchhhcc
Confidence            554                            44432 222 34556666666666555422 111    12444555444


Q ss_pred             ccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccc
Q 037822          201 NELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI  280 (497)
Q Consensus       201 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l  280 (497)
                      +... .......++.++.+.+..+....... .....+.+...+..+. .++..  ..++.++.+++++|.... .+   
T Consensus       150 ~~~~-~~~~l~~l~~l~~L~l~~n~~~~~~~-~~~~~~~l~~~~~~~~-~~~~~--~~l~~L~~l~l~~n~~~~-~~---  220 (353)
T d1jl5a_         150 NQLE-ELPELQNLPFLTAIYADNNSLKKLPD-LPLSLESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLKT-LP---  220 (353)
T ss_dssp             SCCS-SCCCCTTCTTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCS-SCCCC--TTCTTCCEEECCSSCCSS-CC---
T ss_pred             cccc-ccccccccccceeccccccccccccc-cccccccccccccccc-ccccc--cccccccccccccccccc-cc---
Confidence            4332 11122234445555555555443221 1223344444444333 22221  356677777777766542 11   


Q ss_pred             cCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCE
Q 037822          281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDS  360 (497)
Q Consensus       281 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  360 (497)
                      ....++..+.+.++.+. ..+   ...+.+...++..+.+.+...    -.......++..+.+.+.    ...+++|++
T Consensus       221 ~~~~~l~~~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~----~~~~~~L~~  288 (353)
T d1jl5a_         221 DLPPSLEALNVRDNYLT-DLP---ELPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPPSLEE  288 (353)
T ss_dssp             SCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE----CCCCTTCCE
T ss_pred             ccccccccccccccccc-ccc---ccccccccccccccccccccc----ccchhcccccccCccccc----cccCCCCCE
Confidence            22355666666666654 222   223455566655554432110    012334455555555422    233567888


Q ss_pred             EecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCc
Q 037822          361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPP  423 (497)
Q Consensus       361 L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  423 (497)
                      |++++|++. .+|..    +++|+.|++++|+++ .+|..   +++|++|++++|++. .+|.
T Consensus       289 L~Ls~N~l~-~lp~~----~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         289 LNVSNNKLI-ELPAL----PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             EECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             EECCCCccC-ccccc----cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            888888777 66642    677888888888877 45532   457788888888876 4454

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-21  Score=188.45  Aligned_cols=405  Identities=15%  Similarity=0.101  Sum_probs=204.0

Q ss_pred             CCCCEEECcCCcCcccC-CccCCCCCCCCEEEcCCCccccccC---hhhhhcCCCCceEeccCccccceeeecccCCCCC
Q 037822           65 TFLKELYLSSNQMNGKF-PENFGQLSAVEVLDLSENQWEGIIT---ETHFRNLSNLKELALNKQSENISLIFNISSHWIP  140 (497)
Q Consensus        65 ~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  140 (497)
                      ++|++||++++++++.. ...+..++++++|++++|.++..-.   ..++..+++|++|++++|.+.......+...+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999998633 2335668899999999998864211   1257889999999999987654333444444433


Q ss_pred             -CccccEEEccCCcCCCC----CCccccCCCCccEEEeeccccccccCchhhhcc----cCccEEEcccccccccCCcc-
Q 037822          141 -PFKLTFINIRSCQLGPK----FPTWLRNQTELTTLVLNNVRISDTIPDWFWQLD----LTLDELDVAYNELSGSIPNS-  210 (497)
Q Consensus       141 -~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~-  210 (497)
                       ..+|++|++++|+++..    ++..+..+++|++|++++|.+.+.....+....    .................... 
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence             34799999999987643    345567788999999999887654333332211    11222222222221110000 


Q ss_pred             ----ccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceec----ccccccC
Q 037822          211 ----LGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS----VSKSICN  282 (497)
Q Consensus       211 ----~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~  282 (497)
                          .....++.++++.+........                 .....+.........+++..+.+...    ....+..
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~-----------------~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  224 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVR-----------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS  224 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHH-----------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccc-----------------ccccccccccccccccccccccccchhhhcccccccc
Confidence                0122334444444332210000                 00000111122334455544443311    1112333


Q ss_pred             cCCccEEEeecceeec-----ccCcccccCCCCCEEECccCcccccCC----cccccccCCcEEEeecceeeeeCCcc--
Q 037822          283 LQQLLTLVISNNNLSG-----EIPRLWSNISSLYILDMSNNSLSGEIP----ESIGSLLSVRFLILCNNHISGEVPPS--  351 (497)
Q Consensus       283 l~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~--  351 (497)
                      .+.++.+.+.+|.+..     ...........++.+++++|.+.....    ..+...+.++.+++++|.+.......  
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            4555666665554321     111222334556666666665542211    12334556666666666554211111  


Q ss_pred             ---cccCCCCCEEecCCCcCcccCChhH---hhhCCCCCEEEccCcccccC----CCcccC-CCCCCCEEEccCCcCcCC
Q 037822          352 ---LKNCSMMDSLDLGDNQLSGNIPAWI---GESMPSLSILRLRSNYFNGT----IPPELC-KLPALHILDLSHNNLSGI  420 (497)
Q Consensus       352 ---~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~L~~L~l~~n~~~~~----~~~~l~-~l~~L~~L~l~~n~i~~~  420 (497)
                         ....+.|+.+++++|.+.+.....+   ....++|++|++++|++++.    ++..+. ..+.|++|++++|.|++.
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence               1123456666666666654332222   22345666677766666532    122222 345566777777766532


Q ss_pred             ----CCccccCCCCCcccCCCCCcccccceeeeeCcccccc-ccccccCEEEccCCcccccCChhh----hccCCCCeE
Q 037822          421 ----IPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFY-TTLYLVNLMDLSSNNLSGEMPVEL----TRLIHLGTL  490 (497)
Q Consensus       421 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l----~~l~~L~~l  490 (497)
                          +++.+..+++|+.|++++|++.......+.    ..+ .....|+.|+++++.+.......+    ...|+|+.+
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~----~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLV----ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH----HHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHH----HHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence                223344555666666655554321111000    001 122357888888887765544433    234666544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-17  Score=147.10  Aligned_cols=220  Identities=19%  Similarity=0.093  Sum_probs=155.2

Q ss_pred             CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCccee-cccccccCcCCccEEEeec-c
Q 037822          217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISN-N  294 (497)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~-n  294 (497)
                      +.++.++..++..++..+.++++|++++|.+. .++...+..+++|++|++++|.+.+ ..+.++..++.++++.+.. +
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            34555555555443334458888999988887 5666555778999999999998764 3456788889999998765 4


Q ss_pred             eeecccCcccccCCCCCEEECccCcccccCCc-ccccccCCcEEEeecceeeeeCCcccccCC-CCCEEecCCCcCcccC
Q 037822          295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPE-SIGSLLSVRFLILCNNHISGEVPPSLKNCS-MMDSLDLGDNQLSGNI  372 (497)
Q Consensus       295 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~  372 (497)
                      .+....+..|..+++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.+++++|++. .+
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i  168 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI  168 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-cc
Confidence            66666777788899999999999988643332 233445555556666666655555666554 7888999999888 66


Q ss_pred             ChhHhhhCCCCCEE-EccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCC
Q 037822          373 PAWIGESMPSLSIL-RLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSV  439 (497)
Q Consensus       373 ~~~~~~~~~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~  439 (497)
                      +...+. .+++.++ ++++|+++...+..|.++++|++|++++|+++...+..|.+++.|++++++..
T Consensus       169 ~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         169 HNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             cccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            665555 5555555 46677787433456888999999999999998666667788888877665443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.5e-17  Score=145.64  Aligned_cols=205  Identities=20%  Similarity=0.278  Sum_probs=124.7

Q ss_pred             ceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822          238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN  317 (497)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  317 (497)
                      ..++++.+++++....   ..+.+|++|++.+|.+.+.  ..+..+++|++|++++|.+.+..  .+..+++++.+++++
T Consensus        22 ~~~~l~~~~~~d~~~~---~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSG   94 (227)
T ss_dssp             HHHHTTCSSTTSEECH---HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCS
T ss_pred             HHHHhCCCCcCCcCCH---HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccc
Confidence            3445555555533221   3456677777777776632  34666777777777777665322  256667777777777


Q ss_pred             CcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC
Q 037822          318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI  397 (497)
Q Consensus       318 n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  397 (497)
                      |.++.  ...+..+++|++++++++...+  ...+...+.++.+.++++.+....+  +. .+++|+.|++++|.++.. 
T Consensus        95 n~~~~--i~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~L~~L~l~~n~~~~~-  166 (227)
T d1h6ua2          95 NPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNAQVSDL-  166 (227)
T ss_dssp             CCCSC--CGGGTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC-
T ss_pred             ccccc--cccccccccccccccccccccc--cchhccccchhhhhchhhhhchhhh--hc-cccccccccccccccccc-
Confidence            76652  2245566677777776666542  2334556666666666666542211  22 256666677666666522 


Q ss_pred             CcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccC
Q 037822          398 PPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM  477 (497)
Q Consensus       398 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  477 (497)
                       ..+..+++|++|++++|++.+. + .                                ++++++|++|++++|++++..
T Consensus       167 -~~l~~l~~L~~L~Ls~n~l~~l-~-~--------------------------------l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         167 -TPLANLSKLTTLKADDNKISDI-S-P--------------------------------LASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC-G-G--------------------------------GGGCTTCCEEECTTSCCCBCG
T ss_pred             -hhhcccccceecccCCCccCCC-h-h--------------------------------hcCCCCCCEEECcCCcCCCCc
Confidence             2356666666666666666532 1 1                                245667788999999988544


Q ss_pred             ChhhhccCCCCeEECCC
Q 037822          478 PVELTRLIHLGTLNLSR  494 (497)
Q Consensus       478 ~~~l~~l~~L~~l~l~~  494 (497)
                      |  +..+++|+.|+|++
T Consensus       212 ~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         212 P--LANTSNLFIVTLTN  226 (227)
T ss_dssp             G--GTTCTTCCEEEEEE
T ss_pred             c--cccCCCCCEEEeeC
Confidence            3  88899999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4e-17  Score=144.51  Aligned_cols=78  Identities=22%  Similarity=0.109  Sum_probs=36.6

Q ss_pred             CccEEEcccCcceecccccccCcCCccEEE-eecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822          261 FLTDLDISFNSLNGSVSKSICNLQQLLTLV-ISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL  339 (497)
Q Consensus       261 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~-l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  339 (497)
                      .++.+++++|.+.......+ ..++++++. +++|.++...+..|..+++|++|++++|+++...+..|..++.|+++++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            44445555555543322222 223333332 3444454323334556666666666666665444444555555554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.3e-17  Score=142.01  Aligned_cols=199  Identities=20%  Similarity=0.302  Sum_probs=154.6

Q ss_pred             EEccCCccccCCCC-CccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceee
Q 037822          219 VDLSSNSFEGPLPL-WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS  297 (497)
Q Consensus       219 l~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~  297 (497)
                      +++..+.+++.... .+.+|+.|++.+|++. .++ .+ ..+++|++|++++|.+.+..  .+..+++++++++++|.++
T Consensus        24 ~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHTTCSSTTSEECHHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS
T ss_pred             HHhCCCCcCCcCCHHHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeeccc--ccccccccccccccccccc
Confidence            34555555554432 3559999999999998 443 33 68999999999999997543  4889999999999999887


Q ss_pred             cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHh
Q 037822          298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG  377 (497)
Q Consensus       298 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  377 (497)
                       .+ ..+..+++|+.+.++++...+  ...+...+.++.+.++++.+..  ...+..+++|+.|++++|.+.+ .+. + 
T Consensus        99 -~i-~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~-~~~-l-  169 (227)
T d1h6ua2          99 -NV-SAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD-LTP-L-  169 (227)
T ss_dssp             -CC-GGGTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCC-CGG-G-
T ss_pred             -cc-ccccccccccccccccccccc--cchhccccchhhhhchhhhhch--hhhhcccccccccccccccccc-chh-h-
Confidence             33 457889999999999998763  3346778899999999988853  3457889999999999999873 332 3 


Q ss_pred             hhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccC
Q 037822          378 ESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP  435 (497)
Q Consensus       378 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  435 (497)
                      .++++|+.|++++|++++ ++ .+..+++|++|++++|++++..  .++++++|+.|+
T Consensus       170 ~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~  223 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVT  223 (227)
T ss_dssp             TTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEE
T ss_pred             cccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEE
Confidence            348999999999999984 43 4889999999999999998543  366666665543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.3e-16  Score=132.87  Aligned_cols=176  Identities=25%  Similarity=0.380  Sum_probs=122.3

Q ss_pred             EecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCc
Q 037822          240 LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS  319 (497)
Q Consensus       240 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  319 (497)
                      ..++.+.+++....   ..++++++|+++++.+...  ..++.+++|++|++++|++++ .+ .++.+++|++|++++|.
T Consensus        23 ~~l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          23 TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHTTCSSTTSEECH---HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCccCH---HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-cc-cccCCcccccccccccc
Confidence            34445555433322   2467788888888887643  346778888888888888773 32 37788888888888887


Q ss_pred             ccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCc
Q 037822          320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP  399 (497)
Q Consensus       320 i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  399 (497)
                      +... + .+..+++|++|++++|....  ...+..+++|+.|++++|.+. .++. +. .+++|+.|++.+|++++ + .
T Consensus        96 ~~~~-~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~-l~-~~~~L~~L~l~~n~l~~-l-~  166 (199)
T d2omxa2          96 IADI-T-PLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISA-LS-GLTSLQQLNFSSNQVTD-L-K  166 (199)
T ss_dssp             CCCC-G-GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCGG-GT-TCTTCSEEECCSSCCCC-C-G
T ss_pred             cccc-c-cccccccccccccccccccc--ccccchhhhhHHhhhhhhhhc-cccc-cc-ccccccccccccccccC-C-c
Confidence            7632 2 47778888888888887753  245677888888888888876 4442 33 37888888888888874 3 3


Q ss_pred             ccCCCCCCCEEEccCCcCcCCCCccccCCCCCcc
Q 037822          400 ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKV  433 (497)
Q Consensus       400 ~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  433 (497)
                      .+..+++|++|++++|++++. + .+.++++|+.
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~  198 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSDI-S-VLAKLTNLES  198 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSE
T ss_pred             cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCc
Confidence            477888888888888888743 2 4666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.5e-16  Score=133.96  Aligned_cols=165  Identities=25%  Similarity=0.346  Sum_probs=86.3

Q ss_pred             cCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEe
Q 037822          283 LQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD  362 (497)
Q Consensus       283 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  362 (497)
                      +.+|++|++++|.+.. .+ .+..+++|++|++++|++++..  .++.+++|++|++++|.+++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            3445555555555542 21 2455555555555555555322  24455556666665555542 22 355556666666


Q ss_pred             cCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccc
Q 037822          363 LGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYE  442 (497)
Q Consensus       363 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~  442 (497)
                      +++|.+. .++ .+. .++.++.+++++|.+++  +..+..+++|+.+++++|++++. + .+                 
T Consensus       119 l~~~~~~-~~~-~l~-~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l-----------------  174 (210)
T d1h6ta2         119 LEHNGIS-DIN-GLV-HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PL-----------------  174 (210)
T ss_dssp             CTTSCCC-CCG-GGG-GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GG-----------------
T ss_pred             ccccccc-ccc-ccc-ccccccccccccccccc--ccccccccccccccccccccccc-c-cc-----------------
Confidence            6666554 222 122 25566666666666552  22345556666666666666532 1 12                 


Q ss_pred             ccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCC
Q 037822          443 GSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSR  494 (497)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~  494 (497)
                                     +.+++|++|++++|.+++ ++ .|..+++|++|+|++
T Consensus       175 ---------------~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 ---------------AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---------------TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ---------------cCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence                           223445666677666653 33 366677777777653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.6e-16  Score=134.69  Aligned_cols=175  Identities=23%  Similarity=0.258  Sum_probs=129.8

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCccee-cccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD  314 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  314 (497)
                      ..+.++.++++++ .+|..+   .+.+++|++++|.++. ..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            3456777777776 666653   4678888888888864 4456678888999999998888877778888888999999


Q ss_pred             CccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc
Q 037822          315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN  394 (497)
Q Consensus       315 l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  394 (497)
                      +++|++....+.+|..+++|++|+|++|.++...+.+|..+++|+++++++|.+........+  ...++.+.+..+.++
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCB
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeE
Confidence            999998877778888899999999999998877777888889999999999887643332221  123555666667766


Q ss_pred             cCCCcccCCCCCCCEEEccCCcCcC
Q 037822          395 GTIPPELCKLPALHILDLSHNNLSG  419 (497)
Q Consensus       395 ~~~~~~l~~l~~L~~L~l~~n~i~~  419 (497)
                      +..|..   +.+++.++++.+.+..
T Consensus       163 c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         163 CGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             BCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             eCCChh---hcCCEeeecCHhhCcC
Confidence            555543   4455566777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.1e-15  Score=130.28  Aligned_cols=178  Identities=25%  Similarity=0.357  Sum_probs=119.9

Q ss_pred             EEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecce
Q 037822          264 DLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH  343 (497)
Q Consensus       264 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~  343 (497)
                      ...++.+.+++..  ....++++++|++++|.+. .+ +.++.+++|++|++++|++++..  .++.+++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccCcc--cccCCcccccccccccc
Confidence            3445555554332  2345678888888888876 33 35677888888888888877433  27778888888888887


Q ss_pred             eeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCc
Q 037822          344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPP  423 (497)
Q Consensus       344 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  423 (497)
                      +.. + ..+..+++|+.|++++|.+. .++ .+. .+++|+.|++++|++. .+ +.+..+++|++|++++|++++. + 
T Consensus        96 ~~~-~-~~l~~l~~L~~L~l~~~~~~-~~~-~~~-~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l-~-  166 (199)
T d2omxa2          96 IAD-I-TPLANLTNLTGLTLFNNQIT-DID-PLK-NLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDL-K-  166 (199)
T ss_dssp             CCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGT-TCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC-G-
T ss_pred             ccc-c-cccccccccccccccccccc-ccc-ccc-hhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCC-c-
Confidence            752 2 24677788888888877765 222 222 3777888888887776 22 3567777888888887777643 1 


Q ss_pred             cccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeE
Q 037822          424 CVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL  490 (497)
Q Consensus       424 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l  490 (497)
                      .+                                +++++|++|++++|++++. + .++.+++|++|
T Consensus       167 ~l--------------------------------~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 PL--------------------------------ANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             GG--------------------------------TTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             cc--------------------------------cCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            13                                3456678899999988753 3 47888888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.3e-17  Score=146.84  Aligned_cols=181  Identities=17%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecce-eecc-cCcccccCCCCCEE
Q 037822          236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN-LSGE-IPRLWSNISSLYIL  313 (497)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~L  313 (497)
                      .+++++++++.+.+.....++..+++|++|++++|.+.+..+..++.+++|++|++++|. ++.. .......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            455555555544433333334455555555555555544444445555555555555532 2211 11112334555555


Q ss_pred             ECccCc-ccccCC-cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC--cCcccCChhHhhhCCCCCEEEcc
Q 037822          314 DMSNNS-LSGEIP-ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN--QLSGNIPAWIGESMPSLSILRLR  389 (497)
Q Consensus       314 ~l~~n~-i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~i~~~~~~~~~~~~~~L~~L~l~  389 (497)
                      ++++|. +++... ..+.                       ..+++|+.|+++++  .+++.....+...+++|+.|+++
T Consensus       127 ~ls~c~~~~~~~~~~~~~-----------------------~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVA-----------------------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHH-----------------------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccccchhhhc-----------------------ccccccchhhhcccccccccccccccccccccccccccc
Confidence            555442 211100 1111                       12344555555543  23322222333335555555555


Q ss_pred             Ccc-cccCCCcccCCCCCCCEEEccCC-cCcCCCCccccCCCCCcccCCCCC
Q 037822          390 SNY-FNGTIPPELCKLPALHILDLSHN-NLSGIIPPCVGNFSGMKVEPPDSV  439 (497)
Q Consensus       390 ~n~-~~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~~  439 (497)
                      +|. +++.....+..+++|++|++++| .+++.....+.++++|+.|++++|
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            542 33333344455555555555554 344443444555555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2e-15  Score=129.76  Aligned_cols=164  Identities=23%  Similarity=0.315  Sum_probs=89.7

Q ss_pred             CCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEE
Q 037822          259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI  338 (497)
Q Consensus       259 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  338 (497)
                      +..+++|++++|.+...  ..+..+++|++|++++|.+++ .+ .++.+++|+.|++++|++++ .+ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            34555556665555432  234555666666666665552 22 24555666666666666552 22 355566666666


Q ss_pred             eecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822          339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS  418 (497)
Q Consensus       339 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~  418 (497)
                      +++|.+.  ....+..+++++.+++++|.+.+ .+ ... .+++|+.+++++|++++ ++ .+..+++|++|++++|+++
T Consensus       119 l~~~~~~--~~~~l~~l~~l~~l~~~~n~l~~-~~-~~~-~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGIS--DINGLVHLPQLESLYLGNNKITD-IT-VLS-RLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCC--CCGGGGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc--ccccccccccccccccccccccc-cc-ccc-ccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC
Confidence            6666553  12345556666666666666552 22 122 25666666666666653 22 3566666666666666665


Q ss_pred             CCCCccccCCCCCcccCCC
Q 037822          419 GIIPPCVGNFSGMKVEPPD  437 (497)
Q Consensus       419 ~~~~~~l~~l~~L~~L~l~  437 (497)
                      + ++ .+.++++|+.|+++
T Consensus       192 ~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 D-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             B-CG-GGTTCTTCSEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEEcc
Confidence            3 22 46666666666543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.1e-17  Score=145.97  Aligned_cols=63  Identities=22%  Similarity=0.220  Sum_probs=38.8

Q ss_pred             hcCCCCccEEEcccCc-ceecccccccCcCCccEEEeecc-eeecccCcccccCCCCCEEECccC
Q 037822          256 GQKIPFLTDLDISFNS-LNGSVSKSICNLQQLLTLVISNN-NLSGEIPRLWSNISSLYILDMSNN  318 (497)
Q Consensus       256 ~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n  318 (497)
                      ...+|+|++|++++|. +++.....+..+++|++|++++| .++......++.+++|+.|++++|
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3456777777777653 55555556666677777777664 344444444556666666666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=2.5e-16  Score=133.59  Aligned_cols=174  Identities=18%  Similarity=0.236  Sum_probs=134.2

Q ss_pred             CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822          217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL  296 (497)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~  296 (497)
                      ..++.+++.++..+...+.++++|++++|.++..++...+..+++|++|++++|.+....+..+..+++|++|++++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            35566666666544444568999999999997667777777899999999999999988888999999999999999999


Q ss_pred             ecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhH
Q 037822          297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI  376 (497)
Q Consensus       297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  376 (497)
                      ....+.+|.++++|++|++++|+|+...+.+|..+++|++|++++|.+...... ......++.+.+..+.++...|.. 
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~~-  168 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSK-  168 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSSTT-
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCeEeCCChh-
Confidence            977788899999999999999999988888999999999999999988633211 111122445556666665445543 


Q ss_pred             hhhCCCCCEEEccCccccc
Q 037822          377 GESMPSLSILRLRSNYFNG  395 (497)
Q Consensus       377 ~~~~~~L~~L~l~~n~~~~  395 (497)
                         +..++.++++.+.++.
T Consensus       169 ---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         169 ---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             ---TTTSBGGGSCTTTCCC
T ss_pred             ---hcCCEeeecCHhhCcC
Confidence               4556667777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=7.1e-16  Score=143.91  Aligned_cols=114  Identities=25%  Similarity=0.276  Sum_probs=62.1

Q ss_pred             cCCCCCEEECccCccccc-----CCcccccccCCcEEEeecceeeee----CCcccccCCCCCEEecCCCcCcccCChhH
Q 037822          306 NISSLYILDMSNNSLSGE-----IPESIGSLLSVRFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPAWI  376 (497)
Q Consensus       306 ~~~~L~~L~l~~n~i~~~-----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  376 (497)
                      .++.+++|++++|.+...     ....+..+++|++|++++|.++..    +...+..+++|++|++++|.+.+.....+
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            344555555555554421     122344455666666666655321    22345566777777777777665433333


Q ss_pred             hhh-----CCCCCEEEccCcccccC----CCcccC-CCCCCCEEEccCCcCcC
Q 037822          377 GES-----MPSLSILRLRSNYFNGT----IPPELC-KLPALHILDLSHNNLSG  419 (497)
Q Consensus       377 ~~~-----~~~L~~L~l~~n~~~~~----~~~~l~-~l~~L~~L~l~~n~i~~  419 (497)
                      +..     .+.|++|++++|+++..    +...+. +++.|+.|++++|.+..
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            221     24577777777776532    122232 45677788888877763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.9e-15  Score=121.65  Aligned_cols=105  Identities=15%  Similarity=0.054  Sum_probs=75.1

Q ss_pred             CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822           17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL   96 (497)
Q Consensus        17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   96 (497)
                      ..+++|++++|+|+.+ +..+..+++|++|++++|.+...  +.+..+++|++|++++|+++...+..+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            3788888888888744 55567788888888888888743  35778888888888888887555555567888888888


Q ss_pred             CCCccccccChhhhhcCCCCceEeccCc
Q 037822           97 SENQWEGIITETHFRNLSNLKELALNKQ  124 (497)
Q Consensus        97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~  124 (497)
                      ++|++++...-..+..+++|+.|++++|
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccchhhcCCC
Confidence            8888765322234666666666666664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.4e-14  Score=111.06  Aligned_cols=101  Identities=24%  Similarity=0.271  Sum_probs=83.6

Q ss_pred             cEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCC
Q 037822           20 EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN   99 (497)
Q Consensus        20 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n   99 (497)
                      |+|++++|+++.. + .+..+++|++|++++|+++ .+|..+..+++|++|++++|.++. .+ .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            5799999999844 4 4899999999999999998 677789999999999999999984 33 5889999999999999


Q ss_pred             ccccccChhhhhcCCCCceEeccCcc
Q 037822          100 QWEGIITETHFRNLSNLKELALNKQS  125 (497)
Q Consensus       100 ~l~~~~~~~~~~~l~~L~~L~l~~~~  125 (497)
                      ++++......+..+++|+.|++++|.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCc
Confidence            99864433467778888888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.1e-15  Score=142.44  Aligned_cols=189  Identities=15%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             ccCCCCCEEECccCcccccCC----cccccccCCcEEEeecceeeeeCC-------------cccccCCCCCEEecCCCc
Q 037822          305 SNISSLYILDMSNNSLSGEIP----ESIGSLLSVRFLILCNNHISGEVP-------------PSLKNCSMMDSLDLGDNQ  367 (497)
Q Consensus       305 ~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~  367 (497)
                      ..+++|++|++++|.+.....    ..+...++|++|++++|.+.....             ......+.|+.+++++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            344555666665555543211    223344556666665555431100             011234566666666666


Q ss_pred             CcccCChhH---hhhCCCCCEEEccCcccccC-----CCcccCCCCCCCEEEccCCcCcCC----CCccccCCCCCcccC
Q 037822          368 LSGNIPAWI---GESMPSLSILRLRSNYFNGT-----IPPELCKLPALHILDLSHNNLSGI----IPPCVGNFSGMKVEP  435 (497)
Q Consensus       368 i~~~~~~~~---~~~~~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~  435 (497)
                      +.+.....+   ...++.|+.|++++|.+...     +...+..+++|+.|++++|+++..    +...+..++.|+.|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            553322211   12255666666666665431     123345566666777766666432    233455666666667


Q ss_pred             CCCCcccccceeeeeCccccccc--cccccCEEEccCCcccccCC----hhhh-ccCCCCeEECCCCCC
Q 037822          436 PDSVKYEGSLQVVLKGSEYVFYT--TLYLVNLMDLSSNNLSGEMP----VELT-RLIHLGTLNLSRNHL  497 (497)
Q Consensus       436 l~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~----~~l~-~l~~L~~l~l~~n~i  497 (497)
                      +++|.+.+.....+    ...+.  ....|++|++++|.++....    ..+. +++.|++|+|++|++
T Consensus       250 Ls~n~i~~~g~~~l----~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         250 LNDCLLSARGAAAV----VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             CTTCCCCHHHHHHH----HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhcCccCchhhHHH----HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            76666543211110    00111  23568888888888865432    2332 467888888888864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-14  Score=116.87  Aligned_cols=112  Identities=18%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             cccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCC
Q 037822          304 WSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSL  383 (497)
Q Consensus       304 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L  383 (497)
                      +.++.++++|++++|+|+ .++..+..+++|+.|++++|.+...  +.+..+++|++|++++|.+. .++..++..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccccc
Confidence            345556667777777666 3344445566677777777766532  34666777777777777776 5555555457777


Q ss_pred             CEEEccCcccccCC-CcccCCCCCCCEEEccCCcCcC
Q 037822          384 SILRLRSNYFNGTI-PPELCKLPALHILDLSHNNLSG  419 (497)
Q Consensus       384 ~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~i~~  419 (497)
                      +.|++++|+++... ...+..+++|++|++++|+++.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCcccc
Confidence            77777777776321 1346677778888888877763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=5.5e-13  Score=103.18  Aligned_cols=118  Identities=25%  Similarity=0.420  Sum_probs=63.6

Q ss_pred             EEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecce
Q 037822          264 DLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH  343 (497)
Q Consensus       264 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~  343 (497)
                      .|++++|.++.. + .+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+++ .+ .+..+++|++|++++|.
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            455566655422 2 3555666666666666665 445555666666666666666652 22 35556666666666666


Q ss_pred             eeeeC-CcccccCCCCCEEecCCCcCccc--CChhHhhhCCCCCEE
Q 037822          344 ISGEV-PPSLKNCSMMDSLDLGDNQLSGN--IPAWIGESMPSLSIL  386 (497)
Q Consensus       344 ~~~~~-~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~~~~L~~L  386 (497)
                      +.... ...+..+++|+.|++++|++.+.  .+..+...+|+|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            55221 13455566666666666665421  233344445555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.3e-12  Score=100.48  Aligned_cols=107  Identities=20%  Similarity=0.130  Sum_probs=87.8

Q ss_pred             CccEEEcCCCCCcccCCccccCCCCCCEEECCCC-cccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822           18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHN-SFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL   96 (497)
Q Consensus        18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   96 (497)
                      ....++.+++.++ ..|..+..+++|++|+++++ .++.+.+.+|.++++|+.|++++|+++...+.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            5567889988887 45677889999999999766 487677788999999999999999999877888999999999999


Q ss_pred             CCCccccccChhhhhcCCCCceEeccCcccc
Q 037822           97 SENQWEGIITETHFRNLSNLKELALNKQSEN  127 (497)
Q Consensus        97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  127 (497)
                      ++|+++. ++...+... .|+.|++++|.+.
T Consensus        88 s~N~l~~-l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALES-LSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSC-CCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcc-cChhhhccc-cccccccCCCccc
Confidence            9999986 455466654 6888888887654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=2e-13  Score=115.42  Aligned_cols=111  Identities=20%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             ccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCC
Q 037822          278 KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM  357 (497)
Q Consensus       278 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  357 (497)
                      ..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.++ .++.....+++|++|++++|.++. + ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccc
Confidence            34444555555555555554 222 3445555555555555554 222222333445555555555432 1 22344444


Q ss_pred             CCEEecCCCcCcccCCh-hHhhhCCCCCEEEccCcccc
Q 037822          358 MDSLDLGDNQLSGNIPA-WIGESMPSLSILRLRSNYFN  394 (497)
Q Consensus       358 L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~l~~n~~~  394 (497)
                      |+.|++++|.+. .++. ..+..+++|+.|++++|++.
T Consensus       117 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhc-cccccccccCCCccceeecCCCccc
Confidence            555555554444 2221 11222444555555444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.1e-13  Score=117.07  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=89.4

Q ss_pred             ccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822          299 EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE  378 (497)
Q Consensus       299 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  378 (497)
                      .++..+..+++|++|++++|.|+. ++ .+..+++|++|++++|.++ .++.....+++|++|++++|.++ .++ .+. 
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~-  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIE-  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHH-
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccc-
Confidence            344567888999999999999874 33 5888999999999999987 45555555678999999999887 443 233 


Q ss_pred             hCCCCCEEEccCcccccCCC-cccCCCCCCCEEEccCCcCcCC
Q 037822          379 SMPSLSILRLRSNYFNGTIP-PELCKLPALHILDLSHNNLSGI  420 (497)
Q Consensus       379 ~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~  420 (497)
                      .+++|+.|++++|+++.... ..+..+++|+.|++++|++...
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            37899999999999874211 3578899999999999988644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.3e-11  Score=95.94  Aligned_cols=86  Identities=22%  Similarity=0.117  Sum_probs=74.7

Q ss_pred             CCCccEEEcCCC-CCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEE
Q 037822           16 SSLLEKLELGFN-QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL   94 (497)
Q Consensus        16 ~~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   94 (497)
                      +++|++|+++++ .++...+.+|.++++|++|++++|+++.+.+.+|..+++|++|++++|+++. ++.......+|++|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc-cChhhhcccccccc
Confidence            349999999876 5887778889999999999999999998888999999999999999999995 44444455589999


Q ss_pred             EcCCCccc
Q 037822           95 DLSENQWE  102 (497)
Q Consensus        95 ~l~~n~l~  102 (497)
                      ++++|++.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            99999985

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.8e-08  Score=79.41  Aligned_cols=16  Identities=25%  Similarity=0.445  Sum_probs=7.3

Q ss_pred             cCCCCCEEecCCCcCc
Q 037822          354 NCSMMDSLDLGDNQLS  369 (497)
Q Consensus       354 ~~~~L~~L~l~~~~i~  369 (497)
                      .+++|+.|++++|.+.
T Consensus        89 ~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          89 KAPNLKILNLSGNELK  104 (162)
T ss_dssp             HSTTCCCCCCTTSCCC
T ss_pred             hCCcccccccccCccc
Confidence            3444444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.3e-07  Score=74.61  Aligned_cols=88  Identities=18%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             CccccCCCCCCEEECCCCccccc--CCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccCh----
Q 037822           34 PSSLGYLKNLRYLELWHNSFVGS--IPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITE----  107 (497)
Q Consensus        34 ~~~~~~l~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----  107 (497)
                      +..+..+++|++|++++|+++..  ++..+..+++|++|++++|.++...+-.+.+..+|++|++++|++......    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            33456799999999999999854  235567899999999999999854333344556899999999998754332    


Q ss_pred             --hhhhcCCCCceEec
Q 037822          108 --THFRNLSNLKELAL  121 (497)
Q Consensus       108 --~~~~~l~~L~~L~l  121 (497)
                        ..+..+|+|+.|+-
T Consensus       138 ~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         138 ISAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHHTTSTTCCEETT
T ss_pred             HHHHHHHCCCCCEECc
Confidence              35788999999974

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=1.8e-06  Score=69.60  Aligned_cols=107  Identities=10%  Similarity=0.073  Sum_probs=71.2

Q ss_pred             CCccEEEcCCC-CCccc----CCccccCCCCCCEEECCCCccccc----CCccccCCCCCCEEECcCCcCccc----CCc
Q 037822           17 SLLEKLELGFN-QLNGD----LPSSLGYLKNLRYLELWHNSFVGS----IPPSIGNLTFLKELYLSSNQMNGK----FPE   83 (497)
Q Consensus        17 ~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~   83 (497)
                      ++|++|+++++ .+...    +-..+...+.|++|++++|.+...    +.+.+...+.|++|++++|.++..    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            48999999875 46532    233566778899999998887642    334456678889999988888753    233


Q ss_pred             cCCCCCCCCEEEcCCCcccccc------ChhhhhcCCCCceEeccC
Q 037822           84 NFGQLSAVEVLDLSENQWEGII------TETHFRNLSNLKELALNK  123 (497)
Q Consensus        84 ~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~l~~L~~L~l~~  123 (497)
                      ++...+.|++|++++|.+...-      ...++...+.|+.|+++.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            5777788888888877644210      112445566677766654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=1.4e-06  Score=70.34  Aligned_cols=63  Identities=10%  Similarity=0.129  Sum_probs=26.9

Q ss_pred             CCCCCEEECCCC-ccccc----CCccccCCCCCCEEECcCCcCcccCCc----cCCCCCCCCEEEcCCCccc
Q 037822           40 LKNLRYLELWHN-SFVGS----IPPSIGNLTFLKELYLSSNQMNGKFPE----NFGQLSAVEVLDLSENQWE  102 (497)
Q Consensus        40 l~~L~~L~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~  102 (497)
                      .+.|+.|+++++ .+...    +..++...+.|++|++++|.+++....    .+...+.|++|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            345555555543 23211    222344445555555555554432111    1223344455555444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.60  E-value=3.6e-06  Score=67.84  Aligned_cols=66  Identities=20%  Similarity=0.151  Sum_probs=27.9

Q ss_pred             hcCCCCceEeccCccccceeeecccCCCCCCccccEEEcc--CCcCCC----CCCccccCCCCccEEEeecc
Q 037822          111 RNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIR--SCQLGP----KFPTWLRNQTELTTLVLNNV  176 (497)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~--~~~~~~----~~~~~l~~l~~L~~L~l~~~  176 (497)
                      ...+.++.+++.+|.+.......+...+...+.|+.++|.  ++.+..    .+.+.+...++|+.|++..+
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3344444444444433333333333333444444443332  233322    22333445566666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.59  E-value=2.2e-06  Score=69.14  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=58.4

Q ss_pred             CCccEEEcCC-CCCccc----CCccccCCCCCCEEECCCCccccc----CCccccCCCCCCEEECcCCcCccc----CCc
Q 037822           17 SLLEKLELGF-NQLNGD----LPSSLGYLKNLRYLELWHNSFVGS----IPPSIGNLTFLKELYLSSNQMNGK----FPE   83 (497)
Q Consensus        17 ~~L~~L~l~~-~~i~~~----~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~   83 (497)
                      |.|++|++++ +.++..    +-.++...++|++|++++|.+...    +...+...+.++.+++++|.++..    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4777777776 345422    223344667777777777766432    333445566777777777766542    223


Q ss_pred             cCCCCCCCCEEEcC--CCcccccc---ChhhhhcCCCCceEeccC
Q 037822           84 NFGQLSAVEVLDLS--ENQWEGII---TETHFRNLSNLKELALNK  123 (497)
Q Consensus        84 ~~~~l~~L~~L~l~--~n~l~~~~---~~~~~~~l~~L~~L~l~~  123 (497)
                      .+...++|+++++.  +|.+....   ....+...+.|+.|++..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            45566667665543  44443211   112345556666665544