Citrus Sinensis ID: 037826

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRICSSSRHGSDSGRTRRVLPV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEccc
Coil and Loop (DISEMBL)
KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADqlglfpsagasFKDAIADVIGVLIASSALSLWRIcsssrhgsdsgrtrrvlpv
Flexible Loop (DISEMBL)
KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRIcsssrhgsdsgrtrrvlpv
Low Complexity Region (SEG)
KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRICSSSRHGSDSGRTRRVLPV
Disordered region (IsUnstruct)
***LYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRIC******************
Disordered Region (DISOPRED)
**KLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSL*****************RVLP*
Disordered Region (DISEMBL)
KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRICS*****************
Disordered Region (DISPRO)
KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRICSS****************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRICSSSRHGSDSGRTRRVLPV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
356557219	108	PREDICTED: uncharacterized protein LOC10	0.857	0.833	0.604	5e-21
15218367	113	uncharacterized protein [Arabidopsis tha	0.923	0.858	0.580	2e-20
449484799	122	PREDICTED: uncharacterized protein LOC10	0.8	0.688	0.619	5e-20
225465512	111	PREDICTED: uncharacterized protein LOC10	0.780	0.738	0.634	6e-20
297844508	113	hypothetical protein ARALYDRAFT_312580 [	0.914	0.849	0.567	2e-19
255572753	115	conserved hypothetical protein [Ricinus	0.961	0.878	0.672	3e-19
294461516	114	unknown [Picea sitchensis]	0.761	0.701	0.414	8e-08
357118496	116	PREDICTED: uncharacterized protein LOC10	0.742	0.672	0.487	2e-07

>gi|356557219|ref|XP_003546915.1| PREDICTED: uncharacterized protein LOC100809039 [Glycine max]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 2   DKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAG 61
           DKLYHVL C +LTF F A AS++ Y + R ++I +GS+LSLLAGAAKEAAD LG F S+G
Sbjct: 12  DKLYHVLMCFSLTFLFYALASLTPYPY-RRYAISIGSVLSLLAGAAKEAADHLGYFRSSG 70

Query: 62  ASFKDAIADVIGVLIASSALSLWRICSSSRH 92
           AS +DA+AD++GV IAS ALSL+R      H
Sbjct: 71  ASLRDALADILGVCIASFALSLFRSPPPPPH 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218367|ref|NP_173042.1| uncharacterized protein [Arabidopsis thaliana] gi|332191260|gb|AEE29381.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 77/105 (73%), Gaps = 8/105 (7%)

Query: 1   KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSA 60
           +DKLYHV+FC +++  FS  AS SRYSF+R HSI +GS  SL AGAAKEAADQ+G+FPSA
Sbjct: 17  RDKLYHVIFCFSISLIFSTLASFSRYSFLRRHSIWIGSAFSLAAGAAKEAADQIGIFPSA 76

Query: 61  GASFKDAIADVIGVLIASSALSLWRICSSSRHGSDSGRTRRVLPV 105
           GAS +DA+AD IGV+IA+  L LW+        S   RTR +LP+
Sbjct: 77  GASVRDAVADAIGVVIAALVLLLWK--------SRRSRTRPILPI 113

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484799|ref|XP_004156983.1| PREDICTED: uncharacterized protein LOC101230248 [Cucumis sativus]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 62/84 (73%)

Query: 2  DKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAG 61
          DK YH L C +LT  F+++A  +RY FIR HSI +GS+LSL AGAAKE AD+LG F SAG
Sbjct: 16 DKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVADELGFFKSAG 75

Query: 62 ASFKDAIADVIGVLIASSALSLWR 85
          AS +DA+AD IGVLIAS  L   R
Sbjct: 76 ASTRDAVADFIGVLIASFLLHALR 99

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465512|ref|XP_002273014.1| PREDICTED: uncharacterized protein LOC100253325 [Vitis vinifera]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 64/82 (78%)

Query: 2  DKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAG 61
          DK+YH+LFC  LT  FSA A+ +RY F+R +S+ V SILSL  GAAKE AD++G F SAG
Sbjct: 11 DKVYHILFCSALTLIFSALANRTRYPFLRRYSVWVASILSLATGAAKEVADEIGFFKSAG 70

Query: 62 ASFKDAIADVIGVLIASSALSL 83
          AS KDA+AD++GVLIA  ALSL
Sbjct: 71 ASPKDALADLLGVLIACLALSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844508|ref|XP_002890135.1| hypothetical protein ARALYDRAFT_312580 [Arabidopsis lyrata subsp. lyrata] gi|297335977|gb|EFH66394.1| hypothetical protein ARALYDRAFT_312580 [Arabidopsis lyrata subsp. lyrata]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 76/104 (73%), Gaps = 8/104 (7%)

Query: 2   DKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAG 61
           DK+YHV+FC +++  FS  AS+SRYSF+R HSI +GS  S+ AGAAKEAADQ G+FPSAG
Sbjct: 18  DKVYHVVFCFSISLLFSTLASLSRYSFLRRHSIWIGSAFSVAAGAAKEAADQFGIFPSAG 77

Query: 62  ASFKDAIADVIGVLIASSALSLWRICSSSRHGSDSGRTRRVLPV 105
           AS +DA+AD IGV+IA+  L LW+        S   RTR +LP+
Sbjct: 78  ASARDAVADAIGVVIAALVLFLWK--------SRRSRTRPILPI 113

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572753|ref|XP_002527309.1| conserved hypothetical protein [Ricinus communis] gi|223533309|gb|EEF35061.1| conserved hypothetical protein [Ricinus communis]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 86/107 (80%), Gaps = 6/107 (5%)

Query: 1   KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSA 60
            DKLYH+LFCL LT FFS  AS++R+SF+R HSIR+GSILSL AGAAKEAAD  GLFPSA
Sbjct: 13  PDKLYHILFCLFLTLFFSKLASLTRHSFLRNHSIRIGSILSLAAGAAKEAADHFGLFPSA 72

Query: 61  GASFKDAIADVIGVLIASSALSLWRICSSSRHGSDS--GRTRRVLPV 105
           GAS KDA+AD++GV IA+ ALS   IC +  +GSD+  G+ RRVLPV
Sbjct: 73  GASVKDAVADLLGVFIAAFALS---ICKNP-NGSDTGPGQNRRVLPV 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461516|gb|ADE76319.1| unknown [Picea sitchensis]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 2  DKLYHVLFC--LTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPS 59
          DK  H+  C  + +   ++   S +    +   +  VG ILSL  GA KE  DQ+GL+PS
Sbjct: 9  DKFEHLAMCFFIVIMCVYTIRLSFTPSKLLYRCATPVGCILSLTIGAVKELGDQMGLWPS 68

Query: 60 AGASFKDAIADVIGVLIASSAL 81
          AG S KD +ADV GVL+A++ L
Sbjct: 69 AGGSLKDGLADVGGVLLAATLL 90

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357118496|ref|XP_003560990.1| PREDICTED: uncharacterized protein LOC100822918 [Brachypodium distachyon]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 51/78 (65%)

Query: 2  DKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAG 61
          DKL HVL CL +    +  A  S   F+R H++ +G   SL  GAAKEA D+ GLF S+G
Sbjct: 11 DKLQHVLACLLIALAAAGLAGRSSRPFLRRHALALGCAASLAVGAAKEAVDEAGLFGSSG 70

Query: 62 ASFKDAIADVIGVLIASS 79
          AS +DA AD++GV +A+S
Sbjct: 71 ASLRDAAADLLGVSLAAS 88

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2036219	113	AT1G15900 "AT1G15900" [Arabido	0.923	0.858	0.590	7.3e-27

TAIR|locus:2036219 AT1G15900 "AT1G15900" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 62/105 (59%), Positives = 78/105 (74%)

Query:     1 KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSA 60
             +DKLYHV+FC +++  FS  AS SRYSF+R HSI +GS  SL AGAAKEAADQ+G+FPSA
Sbjct:    17 RDKLYHVIFCFSISLIFSTLASFSRYSFLRRHSIWIGSAFSLAAGAAKEAADQIGIFPSA 76

Query:    61 GASFKDAIADVIGVLIASSALSLWRICSSSRHGSDSGRTRRVLPV 105
             GAS +DA+AD IGV+IA+  L LW+    SR      RTR +LP+
Sbjct:    77 GASVRDAVADAIGVVIAALVLLLWK----SRRS----RTRPILPI 113


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.48    29
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  110 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  11.69u 0.07s 11.76t   Elapsed:  00:00:23
  Total cpu time:  11.69u 0.07s 11.76t   Elapsed:  00:00:24
  Start:  Fri May 10 02:01:11 2013   End:  Fri May 10 02:01:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PRK10759	106	lipoprotein; Provisional	99.64
PF10043	85	DUF2279: Predicted periplasmic lipoprotein (DUF227	99.63
PF04892	133	VanZ: VanZ like family ; InterPro: IPR006976 This	98.71
COG5652	148	Predicted integral membrane protein [Function unkn	98.16
COG5544	101	Predicted periplasmic lipoprotein [General functio	96.83
COG3647	205	Predicted membrane protein [Function unknown]	90.59

>PRK10759 lipoprotein; Provisional

Probab=99.64  E-value=1.2e-15  Score=109.73  Aligned_cols=79  Identities=28%  Similarity=0.256  Sum_probs=69.9

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHHHH
Q 037826            1 KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSA   80 (105)
Q Consensus         1 ~DKl~H~l~c~~it~l~~~La~~t~~p~lrr~~~~~G~~~~L~~GaaKE~aD~~g~~rs~G~S~kD~~AD~~Gvl~aa~~   80 (105)
                      .||.|||++|++++..++..+.+..++.  .++..+|..+|+.+|++||+-|  .-.+++|+|+||.++|++|+..+..+
T Consensus        26 ~DKaqHF~~Sa~laaag~~~~~~~~~s~--~~sa~~G~~~s~~~G~~KE~yD--sr~~GsgwSwkDla~DvaGaa~Gy~l  101 (106)
T PRK10759         26 QDKAQHFIASAALSAAGNEYAQHQGMSD--DRSAAFGLMFSVSLGAGKELYD--SRPAGSGWSWKDLAWDVAGASTGYTL  101 (106)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhccCCc--cchhhHhHHHHHHhhHHHHHHh--cCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            5999999999999999998888876664  5666899999999999999999  46788999999999999999999877


Q ss_pred             HHH
Q 037826           81 LSL   83 (105)
Q Consensus        81 l~l   83 (105)
                      .+.
T Consensus       102 ~q~  104 (106)
T PRK10759        102 WQL  104 (106)
T ss_pred             HHh
Confidence            653

>PF10043 DUF2279: Predicted periplasmic lipoprotein (DUF2279); InterPro: IPR018736 This domain has no known function

Probab=99.63  E-value=1.8e-15  Score=104.33  Aligned_cols=70  Identities=34%  Similarity=0.257  Sum_probs=63.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHHHH
Q 037826            1 KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSA   80 (105)
Q Consensus         1 ~DKl~H~l~c~~it~l~~~La~~t~~p~lrr~~~~~G~~~~L~~GaaKE~aD~~g~~rs~G~S~kD~~AD~~Gvl~aa~~   80 (105)
                      .||.+|+++++.|+..+..           .++.++|+.+++.+|++||+.|  ...+++|+|+||.+||.+|+.++..+
T Consensus        15 ~DK~~Hf~~Sa~laa~~~~-----------~~~~~~g~~~s~a~G~~KE~~D--~~~~gsGfS~~DlaaD~aGa~~g~~~   81 (85)
T PF10043_consen   15 ADKAQHFIASAALAAAGNA-----------DRSAWYGLGLSLAIGAAKELYD--SRSGGSGFSWKDLAADRAGAAFGYLA   81 (85)
T ss_pred             ccHHHHHHHHHHHHHhhcc-----------chhHHHHHHHHHHHHHHHHHHh--cCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3999999999999999883           5566799999999999999999  56689999999999999999999988


Q ss_pred             HHH
Q 037826           81 LSL   83 (105)
Q Consensus        81 l~l   83 (105)
                      +++
T Consensus        82 ~~~   84 (85)
T PF10043_consen   82 TQS   84 (85)
T ss_pred             Hhc
Confidence            764

>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases

Probab=98.71  E-value=3.5e-07  Score=62.37  Aligned_cols=76  Identities=22%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 037826            2 DKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSAL   81 (105)
Q Consensus         2 DKl~H~l~c~~it~l~~~La~~t~~p~lrr~~~~~G~~~~L~~GaaKE~aD~~g~~rs~G~S~kD~~AD~~Gvl~aa~~l   81 (105)
                      ||..|++..++++++..+.-.+..       +......++++.+...|..|.+-..|+.  |+.|.++|.+|+.+|..+.
T Consensus        53 ~~~~hi~~f~plG~l~~~~~~~~~-------~~~~~~~~~~~~sl~iE~~Q~~~~~r~~--d~~Dv~~n~~G~~lG~~l~  123 (133)
T PF04892_consen   53 DKIGHILLFFPLGFLLPLLFRRLR-------SWLLAILIGFLFSLFIELIQLFLPGRSF--DIDDVLANTLGALLGYLLY  123 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccc-------hHHHHHHHHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHHHHHHHHHH
Confidence            899999999999999885444322       4445566788999999999977666665  9999999999999999977


Q ss_pred             HHHHH
Q 037826           82 SLWRI   86 (105)
Q Consensus        82 ~l~~~   86 (105)
                      .+.++
T Consensus       124 ~~~~~  128 (133)
T PF04892_consen  124 RLIRK  128 (133)
T ss_pred             HHHHH
Confidence            76665

VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].

>COG5652 Predicted integral membrane protein [Function unknown]

Probab=98.16  E-value=4.1e-06  Score=63.26  Aligned_cols=75  Identities=27%  Similarity=0.345  Sum_probs=61.9

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHHHH
Q 037826            1 KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSA   80 (105)
Q Consensus         1 ~DKl~H~l~c~~it~l~~~La~~t~~p~lrr~~~~~G~~~~L~~GaaKE~aD~~g~~rs~G~S~kD~~AD~~Gvl~aa~~   80 (105)
                      .||++|+..-++++.+-..+..-+.++.  +.++... .++++.|...|..|  .+.|+-..|+.|+++|.+|+.+|...
T Consensus        58 ~~k~aH~~~Yf~lg~l~f~ls~~~r~~~--~~ai~av-~i~~~~~~ldE~~Q--~f~PGR~~sl~Dvi~d~iGA~lg~~~  132 (148)
T COG5652          58 IDKLAHFLGYFSLGILLFGLSRSTRLTG--VIAIAAV-FIGTLYGILDEVHQ--TFLPGRAASLVDVIADTIGAVLGHIW  132 (148)
T ss_pred             HHHHHHHHHHHHHHHHhheeecccccce--eehhhHH-HHHHHHHHHHHHHH--hhcCCcchHHHHHHHHHhhhheeeeE
Confidence            3899999999999988775555555553  5566666 89999999999999  77888888999999999999887643

>COG5544 Predicted periplasmic lipoprotein [General function prediction only]

Probab=96.83  E-value=0.0021  Score=46.49  Aligned_cols=74  Identities=28%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHH
Q 037826            1 KDKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIAS   78 (105)
Q Consensus         1 ~DKl~H~l~c~~it~l~~~La~~t~~p~lrr~~~~~G~~~~L~~GaaKE~aD~~g~~rs~G~S~kD~~AD~~Gvl~aa   78 (105)
                      .||.+|+..+..+...+-..+..-. - ..+++..+|...++..|+-||.-|  +---.+|-|+||..=|+.|...+-
T Consensus        21 ~dka~hf~~sa~l~aAGma~g~~q~-i-~d~R~an~gl~fs~~lg~~ke~~d--sr~agsgwswkd~~wd~aGaa~Gy   94 (101)
T COG5544          21 QDKAQHFNASAMLSAAGMAYGLHQG-I-SDDRSANFGLMFSDSLGASKEAWD--SRPAGSGWSWKDLAWDVAGAATGY   94 (101)
T ss_pred             hhhhhchHHHHHHHhhhhHHHhhcc-c-chhhhhccCchhHHHHhhhHHHhc--cCcccCCcchHHHHhccccchhhh
Confidence            3899999999988887765544332 2 367888899999999999999999  667788899999999999986653

>COG3647 Predicted membrane protein [Function unknown]

Probab=90.59  E-value=2.9  Score=33.41  Aligned_cols=81  Identities=20%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhcccchhhhhhH--HHHHHHHHHHHHHHHHH--------------HhhCCCCCCCCChH
Q 037826            2 DKLYHVLFCLTLTFFFSAWASVSRYSFIRTHSI--RVGSILSLLAGAAKEAA--------------DQLGLFPSAGASFK   65 (105)
Q Consensus         2 DKl~H~l~c~~it~l~~~La~~t~~p~lrr~~~--~~G~~~~L~~GaaKE~a--------------D~~g~~rs~G~S~k   65 (105)
                      ||+.|+.-.+--..+..+|.++    .+|.+.+  .+.+...+..-|.-|++              |-+|+=.+-=-.=|
T Consensus       104 DrvaHf~iGly~~pvAewlLrr----~~~gp~la~ffalf~~msiaA~YElIEWwyA~~aGgeegiaFLGsQGDqWDaQk  179 (205)
T COG3647         104 DRVAHFFIGLYPAPVAEWLLRR----YVRGPKLAAFFALFVAMSIAAMYELIEWWYALAAGGEEGIAFLGSQGDQWDAQK  179 (205)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHH----HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHhhcccchhhhHH
Confidence            7888876544444455566555    2222211  12222333334444443              33343222112348


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 037826           66 DAIADVIGVLIASSALSLWRI   86 (105)
Q Consensus        66 D~~AD~~Gvl~aa~~l~l~~~   86 (105)
                      |-++|.+|++.+-.++++.+-
T Consensus       180 DmlcdtlGAltal~lla~~r~  200 (205)
T COG3647         180 DMLCDTLGALTALILLARFRC  200 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888887754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00