Citrus Sinensis ID: 037834


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
MFVFMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNNELSALDKLKLASHSG
cccEEEEEEccccccEEEEEEEccccccEEEEEEccccccccEEEEcccccccccccccccccHHHHHHHHHHcccccccccEEEEccccc
cEEEEEEEEcccEEEEEEEEEEcccccEEEEEEEEcccccccccccHHHHccccccccHHHccHHHHHHHHHHcccccccccccEcccccc
MFVFMQLITNDKFKSAYHRVLsnkegsrisigsvfmnnscsrrygpikellsevnpplypeitlkdiynnqslknnelsALDKLKLASHSG
MFVFMQLitndkfksaYHRVLsnkegsrisigsVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKnnelsaldklklashsg
MFVFMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNNELSALDKLKLASHSG
*FVFMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNN*********************
MFVFMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNNELSALD**KLA****
MFVFMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNNELSALDKLKLASHSG
MFVFMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNNELSALD*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFVFMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNNELSALDKLKLASHSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query91 2.2.26 [Sep-21-2011]
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.692 0.157 0.565 1e-14
Q9LTH7366 1-aminocyclopropane-1-car yes no 0.692 0.172 0.584 2e-14
Q9LTH8364 1-aminocyclopropane-1-car no no 0.692 0.173 0.553 2e-12
P93821345 1-aminocyclopropane-1-car no no 0.692 0.182 0.569 3e-12
Q9SKK4359 Probable 2-oxoacid depend no no 0.912 0.231 0.471 5e-12
P10967363 1-aminocyclopropane-1-car N/A no 0.890 0.223 0.465 2e-11
Q9LSW7365 1-aminocyclopropane-1-car no no 0.659 0.164 0.529 7e-11
Q84MB3365 1-aminocyclopropane-1-car no no 0.670 0.167 0.537 7e-11
Q8H1S4369 1-aminocyclopropane-1-car no no 0.692 0.170 0.515 2e-10
Q9C5K7369 1-aminocyclopropane-1-car no no 0.692 0.170 0.515 2e-10
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function desciption
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 6/69 (8%)

Query: 4   FMQLITNDKFKSAYHRVLSNKEGSRISIGSVF------MNNSCSRRYGPIKELLSEVNPP 57
            +QLITNDKFKS  HRVL+NK G RIS+   F            R YGPIKEL+SE NPP
Sbjct: 310 LLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPP 369

Query: 58  LYPEITLKD 66
           +Y E+T+KD
Sbjct: 370 IYKEVTVKD 378




Catalyzes the C4-hydroxylation of desacetoxyvindoline.
Catharanthus roseus (taxid: 4058)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2EC: 0
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|P93821|ACCH7_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 7 OS=Arabidopsis thaliana GN=At1g04380 PE=1 SV=1 Back     alignment and function description
>sp|Q9SKK4|GSL_ARATH Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1 Back     alignment and function description
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query91
157169280 372 D4H-like protein [Catharanthus roseus] g 0.692 0.169 0.656 2e-15
388500864 374 unknown [Lotus japonicus] 0.681 0.165 0.640 5e-15
118489003 370 unknown [Populus trichocarpa x Populus d 0.890 0.218 0.522 1e-14
255638215 373 unknown [Glycine max] 0.890 0.217 0.505 4e-14
356527372 690 PREDICTED: 1-aminocyclopropane-1-carboxy 0.890 0.117 0.505 4e-14
356559863 369 PREDICTED: 1-aminocyclopropane-1-carboxy 0.901 0.222 0.494 6e-14
357451781 349 1-aminocyclopropane-1-carboxylate oxidas 0.912 0.237 0.518 6e-14
388513629 378 unknown [Lotus japonicus] 0.945 0.227 0.483 1e-13
359806352 375 uncharacterized protein LOC100790198 [Gl 0.890 0.216 0.505 2e-13
356556983 678 PREDICTED: 1-aminocyclopropane-1-carboxy 0.890 0.119 0.512 2e-13
>gi|157169280|gb|ABV25958.1| D4H-like protein [Catharanthus roseus] gi|319748362|gb|ADV69113.1| desacetoxyvindoline-4-hydroxylase-like protein [Catharanthus roseus] Back     alignment and taxonomy information
 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 51/67 (76%), Gaps = 4/67 (5%)

Query: 4   FMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNN----SCSRRYGPIKELLSEVNPPLY 59
           F+Q+I+NDKFKSA HRVL+NK G RIS  SVFM N    +  R YGPIKELLSE NPP+Y
Sbjct: 278 FLQIISNDKFKSAPHRVLANKNGPRISTASVFMPNFLESAEVRLYGPIKELLSEENPPIY 337

Query: 60  PEITLKD 66
            +IT KD
Sbjct: 338 EQITAKD 344




Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500864|gb|AFK38498.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|118489003|gb|ABK96309.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|255638215|gb|ACU19421.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356527372|ref|XP_003532285.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 12-like [Glycine max] Back     alignment and taxonomy information
>gi|356559863|ref|XP_003548216.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357451781|ref|XP_003596167.1| 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] gi|355485215|gb|AES66418.1| 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513629|gb|AFK44876.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359806352|ref|NP_001241230.1| uncharacterized protein LOC100790198 [Glycine max] gi|255647188|gb|ACU24062.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356556983|ref|XP_003546798.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query91
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.692 0.172 0.584 2.3e-14
TAIR|locus:2040045359 AT2G25450 [Arabidopsis thalian 0.912 0.231 0.471 9.9e-13
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.692 0.173 0.553 1.7e-12
TAIR|locus:2018274345 AT1G04380 [Arabidopsis thalian 0.692 0.182 0.569 1.9e-12
TAIR|locus:2176456365 AT5G43440 [Arabidopsis thalian 0.681 0.169 0.530 4.7e-11
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.681 0.169 0.531 7.8e-11
TAIR|locus:2176466362 AT5G43450 [Arabidopsis thalian 0.692 0.174 0.523 9.8e-11
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 0.681 0.168 0.523 1.7e-10
TAIR|locus:2009210369 AT1G06640 [Arabidopsis thalian 0.681 0.168 0.523 2.8e-10
TAIR|locus:2052781358 AT2G30830 [Arabidopsis thalian 0.692 0.175 0.523 4.3e-10
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 189 (71.6 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query:     4 FMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSC--SRRYGPIKELLSEVNPPLYPE 61
             F+QLITNDKF S  HRVL+N++G RIS+ S F ++    SR YGP+KEL+SE NPP Y +
Sbjct:   281 FLQLITNDKFVSVEHRVLANRQGPRISVASFFSSSMRPNSRVYGPMKELVSEENPPKYRD 340

Query:    62 ITLKD 66
             IT+K+
Sbjct:   341 ITIKE 345




GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA;ISS
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2040045 AT2G25450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018274 AT1G04380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176466 AT5G43450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009210 AT1G06640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query91
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 5e-09
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-08
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-07
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-07
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 5e-07
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 6e-07
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 8e-07
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-06
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-06
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-06
PLN02904357 PLN02904, PLN02904, oxidoreductase 5e-06
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-05
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-05
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-05
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-05
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-05
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 5e-05
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-04
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-04
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-04
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 0.001
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 0.003
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
 Score = 51.0 bits (122), Expect = 5e-09
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 5   MQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRY-GPIKELLSEVNPPLYPEIT 63
           +++++N ++KS  HR L NKE  RIS  +VF      +    P+ EL+S+  PP +P  T
Sbjct: 276 LEILSNGRYKSILHRGLVNKEKVRISW-AVFCEPPKEKIILKPLPELVSKEEPPKFPPRT 334

Query: 64  LKD 66
              
Sbjct: 335 FGQ 337


Length = 360

>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 91
PLN02216357 protein SRG1 99.93
PLN02904357 oxidoreductase 99.93
PLN02947374 oxidoreductase 99.93
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.92
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.92
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.92
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 99.92
PLN02365300 2-oxoglutarate-dependent dioxygenase 99.91
PLN02254358 gibberellin 3-beta-dioxygenase 99.91
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.91
PLN02276361 gibberellin 20-oxidase 99.91
PLN02393362 leucoanthocyanidin dioxygenase like protein 99.91
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 99.91
PLN02704335 flavonol synthase 99.9
PLN02156335 gibberellin 2-beta-dioxygenase 99.9
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.89
PLN02997325 flavonol synthase 99.89
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.89
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 99.89
PLN02485329 oxidoreductase 99.88
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 99.88
PTZ00273320 oxidase reductase; Provisional 99.87
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.86
PLN02403303 aminocyclopropanecarboxylate oxidase 99.85
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.79
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 99.69
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.0
>PLN02216 protein SRG1 Back     alignment and domain information
Probab=99.93  E-value=2.1e-26  Score=170.21  Aligned_cols=82  Identities=23%  Similarity=0.450  Sum_probs=78.1

Q ss_pred             hhhHHhCCeeecccceeecCCCCCceEEEeeeccCCCCcEeecCccccCCCCCCCCCcccHHHHHHHHHHccC-Ccchhc
Q 037834            4 FMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNN-ELSALD   82 (91)
Q Consensus         4 ~l~~~TNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~~i~pl~~~~~~~~p~~y~~~~~~ey~~~~~~~~~-~~~~l~   82 (91)
                      +||+||||+|||++|||++++.++|||||||++|+. |+.|+|+++|+++++|++|++++++||+..++++.. ++..++
T Consensus       275 ~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~-d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~  353 (357)
T PLN02216        275 ILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGM-GKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLD  353 (357)
T ss_pred             hhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCC-CCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCCcchhh
Confidence            799999999999999999998899999999999994 999999999999999999999999999999999888 999999


Q ss_pred             cccc
Q 037834           83 KLKL   86 (91)
Q Consensus        83 ~~~~   86 (91)
                      .+||
T Consensus       354 ~~~~  357 (357)
T PLN02216        354 AMRI  357 (357)
T ss_pred             hhcC
Confidence            9875



>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query91
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-04
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure

Iteration: 1

Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 5 MQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELL---SEVNPPLYPE 61 +++ITN K+KS HRV++ K+G+R S+ S + S + Y P L+ +E N +YP+ Sbjct: 221 LEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIY-PAPALVEKEAEENKQVYPK 279 Query: 62 ITLKD 66 D Sbjct: 280 FVFDD 284

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query91
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-21
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 7e-20
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 8e-09
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-08
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 6e-08
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score = 85.4 bits (212), Expect = 1e-21
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 4   FMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEIT 63
            +++++N K+KS  HR L NKE  RIS               P+ E++S  +P  +P  T
Sbjct: 274 TLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRT 333

Query: 64  LKDIYNNQSLKNNELSALDKLK 85
               +    L   E   L   K
Sbjct: 334 FAQ-HIEHKLFGKEQEELVSEK 354


>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query91
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 99.91
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 99.9
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 99.89
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 99.86
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.85
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 99.71
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=99.91  E-value=1.3e-25  Score=162.52  Aligned_cols=83  Identities=27%  Similarity=0.436  Sum_probs=71.9

Q ss_pred             hhhHHhCCeeecccceeecCCCCCceEEEeeeccCCCCcEeecCccccCCC---CCCCCCcccHHHHHHHHHHccC-Ccc
Q 037834            4 FMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEV---NPPLYPEITLKDIYNNQSLKNN-ELS   79 (91)
Q Consensus         4 ~l~~~TNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~~i~pl~~~~~~~---~p~~y~~~~~~ey~~~~~~~~~-~~~   79 (91)
                      +||+||||+|||+.|||++++.++|+|+|||++|+. |+.|+|+++|++++   +|++|++++++||+..+++..+ ++.
T Consensus       220 ~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~-d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~  298 (319)
T 1w9y_A          220 QLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGS-DAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKE  298 (319)
T ss_dssp             HHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCT-TCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHH
T ss_pred             HHHHHhCCeeecccceecCCCCCCceEEEEEecCCC-CCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCcch
Confidence            799999999999999999999999999999999995 99999999999887   5999999999999999998888 775


Q ss_pred             h-hcccccc
Q 037834           80 A-LDKLKLA   87 (91)
Q Consensus        80 ~-l~~~~~~   87 (91)
                      . ++.+|+-
T Consensus       299 ~~~~~~~~~  307 (319)
T 1w9y_A          299 PRFEAMKAM  307 (319)
T ss_dssp             HHHHHHHHC
T ss_pred             hHHHHHHHH
Confidence            4 7777764



>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 91
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-15
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-10
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-08
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-06
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
 Score = 68.1 bits (165), Expect = 1e-15
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 5   MQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITL 64
           +++++N K+KS  HR L NKE  RIS               P+ E++S  +P  +P  T 
Sbjct: 274 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 333

Query: 65  KDIYNNQSLKNNELSAL 81
              +    L   E   L
Sbjct: 334 AQ-HIEHKLFGKEQEEL 349


>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query91
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 99.92
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 99.91
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 99.87
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.72
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]
Probab=99.92  E-value=1.1e-26  Score=164.20  Aligned_cols=81  Identities=28%  Similarity=0.461  Sum_probs=70.1

Q ss_pred             hhhHHhCCeeecccceeecCCCCCceEEEeeeccCCCCcEeecCccccC---CCCCCCCCcccHHHHHHHHHHccC-Cc-
Q 037834            4 FMQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELLS---EVNPPLYPEITLKDIYNNQSLKNN-EL-   78 (91)
Q Consensus         4 ~l~~~TNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~~i~pl~~~~~---~~~p~~y~~~~~~ey~~~~~~~~~-~~-   78 (91)
                      |||+||||+|||+.|||+.+++.+|||||||++|+. |++|+|+++|++   +++|++|++++++||++.+.+..+ ++ 
T Consensus       219 ~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~-d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~  297 (307)
T d1w9ya1         219 QLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGS-DAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKE  297 (307)
T ss_dssp             HHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCT-TCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHH
T ss_pred             hhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCC-CCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCccc
Confidence            799999999999999999999999999999999995 999999999985   567899999999999999988888 55 


Q ss_pred             chhcccc
Q 037834           79 SALDKLK   85 (91)
Q Consensus        79 ~~l~~~~   85 (91)
                      .+++.+|
T Consensus       298 ~~~~~~~  304 (307)
T d1w9ya1         298 PRFEAMK  304 (307)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            4677765



>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure