Citrus Sinensis ID: 037836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
PSLPPPCPKSPPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPCTCCSIPKCCCKSNCLNCSCKRNCCTCNPCSLFF
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
pslpppcpksppeypdlygkrRELAKVQVLEREISFLEEELKtvdrfhpasrscKEVADFvvaksdplipvnrknrrscrfwkwlcgtpcfnfswlswiccccyskcsihielprccdcsdcsicccrpctccsipkcccksnclncsckrncctcnpcslff
Flexible Loop (DISEMBL)
pslpppcpksppeypdlygKRRELAKVQVLEREISFLEeelktvdrfhpasrsCKEVadfvvaksdplipvnrknrrsCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPCTCCSIPKCCCKSNCLNCSCKRNCCTCNPCSLFF
Low Complexity Region (SEG)
pslpppcpksppeypDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPrccdcsdcsicccrpctccsipkcccksnclncsckrncctcnpcsLFF
Disordered region (IsUnstruct)
**********************ELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPCTCCSIPKCCCKSNCLNCSCKRNCCTCNPCSLF*
Disordered Region (DISOPRED)
*****************YGKRRELAKVQVLEREISFLEEELK**D*FHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPCTCCSIPKCCCKSNCLNCSCKRNCCTCNPCSLFF
Disordered Region (DISEMBL)
*********SPPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPCTCCSIPKCCCKSNCLNCSCKRNCCTCNPCSLFF
Disordered Region (DISPRO)
*******PKSPPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPCTCCSIPKCCCKSNCLNCSCKRNCCTCNPCSLFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PSLPPPCPKSPPEYPDLYGxxxxxxxxxxxxxxxxxxxxxxxxxxxxHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPCTCCSIPKCCCKSNCLNCSCKRNCCTCNPCSLFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q6AWT8	251	Guanine nucleotide-bindin	yes	no	0.840	0.545	0.566	5e-29

>sp|Q6AWT8|GG3_ARATH Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana GN=GG3 PE=2 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 98/143 (68%), Gaps = 6/143 (4%)

Query: 13  EYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72
           EYPDLYGKRRE A+VQ+LEREI FLE E+K ++   PASR  KEV+DFVVA SDPLIP  
Sbjct: 40  EYPDLYGKRREAARVQMLEREIGFLEGEIKFIEGVQPASRCIKEVSDFVVANSDPLIPAQ 99

Query: 73  RKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRPC-- 130
           RK+RRS RFWKWLCG PC +          C SKCS H+  P+CC+C+ CS    + C  
Sbjct: 100 RKSRRSFRFWKWLCG-PCLSLVSFCCC---CQSKCSCHLRKPKCCNCTSCSCIGSKCCDG 155

Query: 131 TCCSIPKCCCKSNCLNCSCKRNC 153
           +CCS   CC + +C +CSC R C
Sbjct: 156 SCCSNICCCPRLSCPSCSCFRGC 178

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224141571	149	predicted protein [Populus trichocarpa]	0.779	0.852	0.692	3e-37
356558421	232	PREDICTED: uncharacterized protein LOC10	0.858	0.603	0.552	1e-33
356532778	217	PREDICTED: uncharacterized protein LOC10	0.754	0.566	0.604	4e-33
357479419	184	hypothetical protein MTR_4g125190 [Medic	0.515	0.456	0.75	6e-33
224069152	142	predicted protein [Populus trichocarpa]	0.723	0.830	0.694	2e-32
357450039	250	hypothetical protein MTR_2g042200 [Medic	0.564	0.368	0.666	2e-31
449446839	169	PREDICTED: guanine nucleotide-binding pr	0.582	0.562	0.653	4e-31
449488205	230	PREDICTED: guanine nucleotide-binding pr	0.582	0.413	0.642	7e-31
363808182	209	uncharacterized protein LOC100783447 [Gl	0.846	0.660	0.583	8e-30
330370708	228	dense and erect pancile 1 [Glycine max]	0.601	0.429	0.64	6e-29

>gi|224141571|ref|XP_002324141.1| predicted protein [Populus trichocarpa] gi|222865575|gb|EEF02706.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 100/130 (76%), Gaps = 3/130 (2%)

Query: 1   PSLPPPCPKSPPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADF 60
           PSLP PCPKSP EYPDLYGKRRE+AKVQ+LEREI FLEEELK++    PAS SCKEV DF
Sbjct: 9   PSLPSPCPKSPREYPDLYGKRREMAKVQMLEREIGFLEEELKSIQGLQPASTSCKEVTDF 68

Query: 61  VVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCS 120
           V+A SDPLIP +RK RRS RFWKWL G  CFNFSW   ICCCC S CS+H E P CC+C+
Sbjct: 69  VMANSDPLIPTSRKKRRSSRFWKWLWGIRCFNFSW---ICCCCSSGCSLHQECPSCCECN 125

Query: 121 DCSICCCRPC 130
            C+   C  C
Sbjct: 126 LCNCSSCISC 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558421|ref|XP_003547505.1| PREDICTED: uncharacterized protein LOC100784824 [Glycine max]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 98/152 (64%), Gaps = 12/152 (7%)

Query: 3   LPPPCPKSPPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV 62
           LP P PK+P  YPDLY KRRE AK+Q+LEREISFLEEELK+ +   PASR CKE+ADFV+
Sbjct: 17  LPSPTPKAPSGYPDLYRKRRETAKIQMLEREISFLEEELKSSEGLQPASRCCKEIADFVM 76

Query: 63  AKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDC 122
           A SDPL+P ++KN +SC  WKWLC  PCFN   LSWIC  C   C  H  L  CC     
Sbjct: 77  ANSDPLLPTSKKNHQSCSLWKWLCDIPCFN---LSWICHWCCDGCFEHQNLSSCCSHG-- 131

Query: 123 SICCCRPCTCCSIPKCCCKSNCLNCSCKRNCC 154
                +PC CCS   C   +NC  CS  R+ C
Sbjct: 132 -----KPCNCCS--SCLPSTNCSCCSNGRSHC 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532778|ref|XP_003534947.1| PREDICTED: uncharacterized protein LOC100817458 [Glycine max]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 93/134 (69%), Gaps = 11/134 (8%)

Query: 2   SLPPPCPKS-PPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADF 60
           SLP P PK+ PP  PDLYGKRRE+AK+Q+LEREISFLEEELK+ +   PASR CKE+ADF
Sbjct: 14  SLPLPSPKAAPPSCPDLYGKRREMAKIQMLEREISFLEEELKSSEGLQPASRCCKEIADF 73

Query: 61  VVAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCS 120
           V+A SDPL+P ++KN RSC FWKWLC  PCFN   LSWIC  C   C  H  +  CC   
Sbjct: 74  VMANSDPLLPTSKKNHRSCSFWKWLCDIPCFN---LSWICHWCCDGCFEHQNMSSCCS-- 128

Query: 121 DCSICCCRPCTCCS 134
                 C PC CCS
Sbjct: 129 -----HCMPCNCCS 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479419|ref|XP_003609995.1| hypothetical protein MTR_4g125190 [Medicago truncatula] gi|355511050|gb|AES92192.1| hypothetical protein MTR_4g125190 [Medicago truncatula]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 63/84 (75%), Positives = 74/84 (88%)

Query: 13  EYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72
           EYPDLYGKRRE+AKVQ+LEREI FLEEELK+++   PAS+ CKE+AD+VVA SDPL+P N
Sbjct: 26  EYPDLYGKRREMAKVQMLEREIGFLEEELKSMEGLQPASKCCKEIADYVVANSDPLLPSN 85

Query: 73  RKNRRSCRFWKWLCGTPCFNFSWL 96
           +KNRRSCRFWKWLC  PCFN SW+
Sbjct: 86  KKNRRSCRFWKWLCRLPCFNLSWI 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069152|ref|XP_002326287.1| predicted protein [Populus trichocarpa] gi|222833480|gb|EEE71957.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 95/121 (78%), Gaps = 3/121 (2%)

Query: 10  SPPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLI 69
           SPPEYPDLYGKRRE+AKVQ+LEREI FLEEELK++    PASR CKEV DFVVA SDPLI
Sbjct: 22  SPPEYPDLYGKRREMAKVQMLEREIGFLEEELKSLQGLQPASRCCKEVTDFVVANSDPLI 81

Query: 70  PVNRKNRRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRP 129
           P +RK RR+C FWKWLCG  CFN   LSWICCCC S CS+H+E P CC+C+  + C C  
Sbjct: 82  PTSRKKRRTCLFWKWLCGIRCFN---LSWICCCCSSGCSLHLECPTCCECNPRNCCSCIS 138

Query: 130 C 130
           C
Sbjct: 139 C 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450039|ref|XP_003595296.1| hypothetical protein MTR_2g042200 [Medicago truncatula] gi|355484344|gb|AES65547.1| hypothetical protein MTR_2g042200 [Medicago truncatula]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 80/96 (83%), Gaps = 4/96 (4%)

Query: 2   SLPPPCPKSPPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFV 61
           SLP P PK+PPEYPDLYGKRRE+AKVQ+LEREISFLEEELK+ + F PAS+ CKE+ADFV
Sbjct: 15  SLPLPSPKAPPEYPDLYGKRREMAKVQMLEREISFLEEELKSSEGFQPASKCCKEIADFV 74

Query: 62  VAKSDPLIPVNRKNRRSCRFWKWLCGTPCFNFSWLS 97
           +A SDPL+P  +KNR++CR WKWL     ++F +L+
Sbjct: 75  MANSDPLLPTTKKNRKTCRLWKWL----WYDFYFLT 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446839|ref|XP_004141178.1| PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Cucumis sativus]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 3/98 (3%)

Query: 16  DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKN 75
           DLYGKRR+ AK+Q+L+REI FLEEELK+ +   PAS+ CKEVAD+V+A SDP+IP  +K+
Sbjct: 29  DLYGKRRQAAKLQMLDREIGFLEEELKSTEGLQPASKCCKEVADYVIANSDPMIPTYKKH 88

Query: 76  RRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIEL 113
           RR C+FWKWLCG PC     LSWICCCCY+ CSIH+E+
Sbjct: 89  RRRCQFWKWLCGFPCCK---LSWICCCCYAGCSIHLEI 123

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488205|ref|XP_004157967.1| PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Cucumis sativus]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 79/98 (80%), Gaps = 3/98 (3%)

Query: 16  DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKN 75
           DLYGKRR+ AK+Q+L+REI FLEEELK+ +   PAS+ CKEVAD+V+A SDP+IP  +K+
Sbjct: 31  DLYGKRRQAAKLQMLDREIGFLEEELKSTEGLQPASKCCKEVADYVIANSDPMIPTYKKH 90

Query: 76  RRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIEL 113
            R C+FWKWLCG PC     LSWICCCCY+ CSIH+E+
Sbjct: 91  HRRCQFWKWLCGFPCCK---LSWICCCCYAGCSIHLEI 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808182|ref|NP_001242228.1| uncharacterized protein LOC100783447 [Glycine max] gi|255637941|gb|ACU19287.1| unknown [Glycine max]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 102/149 (68%), Gaps = 11/149 (7%)

Query: 16  DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKN 75
           DLYGKRRE A+V  LEREI+FLEEELK+V+   PASR CKE+AD+V+A +DPL+P  +KN
Sbjct: 29  DLYGKRRETARVHTLEREITFLEEELKSVEGLQPASRCCKEIADYVMANADPLLPSTKKN 88

Query: 76  RRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPRCCDCSDCSICCCRP---CTC 132
           RRSCRFWKWLCG PCFN SW+   CCCC    S+ ++LPRCC       C C       C
Sbjct: 89  RRSCRFWKWLCGMPCFNLSWIC--CCCCCEGLSLQLKLPRCCCDCKPCSCSCSCLPPIKC 146

Query: 133 CSIPK--CCC---KSNCLNCSCK-RNCCT 155
           CS+PK  CCC   KSNC    C   NCCT
Sbjct: 147 CSLPKWSCCCSCPKSNCCKEGCGFGNCCT 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330370708|gb|AEC12482.1| dense and erect pancile 1 [Glycine max]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 79/100 (79%), Gaps = 2/100 (2%)

Query: 16  DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKN 75
           DLYGKRRE A+V +LEREI+FLEEELK+V+   PASR CKE+AD+V+A +DPL+P  +KN
Sbjct: 29  DLYGKRRETARVHMLEREITFLEEELKSVEGLQPASRCCKEIADYVMANADPLLPSTKKN 88

Query: 76  RRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELPR 115
           RRSCRFWKWLCG PCFN SW+     CC    S+ ++LPR
Sbjct: 89  RRSCRFWKWLCGMPCFNLSWICCC--CCCEGLSLQLKLPR 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:504954807	251	AGG3 "AT5G20635" [Arabidopsis	0.582	0.378	0.666	5.4e-31
TAIR|locus:1005471648	100	AGG2 "G-protein gamma subunit	0.337	0.55	0.490	3.3e-08
UNIPROTKB|Q75WU1	93	RGG1 "Heterotrimeric G protein	0.429	0.752	0.356	7.8e-07
UNIPROTKB|Q6YXX9	150	OSJNBa0026E05.11-1 "Os02g01378	0.325	0.353	0.396	9e-06
TAIR|locus:2087398	98	GG1 "Ggamma-subunit 1" [Arabid	0.325	0.540	0.396	9e-06

TAIR|locus:504954807 AGG3 "AT5G20635" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 66/99 (66%), Positives = 76/99 (76%)

Query:    16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKN 75
             DLYGKRRE A+VQ+LEREI FLE E+K ++   PASR  KEV+DFVVA SDPLIP  RK+
Sbjct:    43 DLYGKRREAARVQMLEREIGFLEGEIKFIEGVQPASRCIKEVSDFVVANSDPLIPAQRKS 102

Query:    76 RRSCRFWKWLCGTPCFNFSWLSWICCCCYSKCSIHIELP 114
             RRS RFWKWLCG PC   S +S+ CCCC SKCS H+  P
Sbjct:   103 RRSFRFWKWLCG-PCL--SLVSF-CCCCQSKCSCHLRKP 137

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0045095 "keratin filament" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:1005471648 AGG2 "G-protein gamma subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query:    16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIP 70
             D  GK R  A+++ LE+E  FLEEEL+ +++   AS SCKE  D V +K DPL+P
Sbjct:    18 DTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLLP 72

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0018342 "protein prenylation" evidence=IMP

GO:0018345 "protein palmitoylation" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

UNIPROTKB|Q75WU1 RGG1 "Heterotrimeric G protein gamma subunit 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 26/73 (35%), Positives = 43/73 (58%)

Query:    16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKN 75
             D  G+ R  A+++ LE+E  FLEEEL+ +D+    S + +E+     +K+DPL+PV    
Sbjct:    11 DTRGRHRIQAELKKLEQEARFLEEELEELDKTDKVSAALQELMVTAESKADPLLPVT--T 68

Query:    76 RRSCRFW-KWLCG 87
               +C+ W +W  G
Sbjct:    69 GPACQSWDRWFEG 81

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6YXX9 OSJNBa0026E05.11-1 "Os02g0137800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query:    19 GKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPV 71
             GK R  A +  L++E+  L++EL  ++   PAS +C+ V      KSDPL+PV
Sbjct:    65 GKHRLSAAIARLDQELQSLQDELNELETMEPASAACQGVITSTEGKSDPLLPV 117

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2087398 GG1 "Ggamma-subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 21/53 (39%), Positives = 34/53 (64%)

Query:    19 GKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPV 71
             GK R LA++  +E+E++FLE+ELK V+     S  C+E+   +    DPL+P+
Sbjct:    19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPL 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.500    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       102   0.00091  102 3  11 22  0.46    29
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.94u 0.10s 14.04t   Elapsed:  00:00:01
  Total cpu time:  13.94u 0.10s 14.04t   Elapsed:  00:00:01
  Start:  Fri May 10 02:13:25 2013   End:  Fri May 10 02:13:26 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0005525 "GTP binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010541 "acropetal auxin transport" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PF00631	68	G-gamma: GGL domain; InterPro: IPR015898 This entr	99.46
cd00068	57	GGL G protein gamma subunit-like motifs, the alpha	97.45
smart00224	63	GGL G protein gamma subunit-like motifs.	96.45
KOG4119	71	consensus G protein gamma subunit [Signal transduc	95.73
PRK14011	144	prefoldin subunit alpha; Provisional	95.52
PRK01203	130	prefoldin subunit alpha; Provisional	94.45
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	93.46
PRK03947	140	prefoldin subunit alpha; Reviewed	92.25
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	92.09
PRK13922	276	rod shape-determining protein MreC; Provisional	90.85
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	89.97
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.7
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	88.63
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	86.75
PF10458	66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	86.03
PF07334	76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	86.02
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	85.21
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	83.75
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	82.72
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.46
PF06657	79	Cep57_MT_bd: Centrosome microtubule-binding domain	81.15
PRK06342	160	transcription elongation factor regulatory protein	80.34
PF08286	118	Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252	80.23

>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide

Probab=99.46  E-value=1.5e-14  Score=99.56  Aligned_cols=62  Identities=27%  Similarity=0.489  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccCCCchhhHHHHHhCC
Q 037836           24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLCGT   88 (163)
Q Consensus        24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g~~~s~~~~rW~~~~   88 (163)
                      ++++++|.+||.+|++||+. |++ +||++|+||++||++.+|||||...|+.+ .++..|+.+.
T Consensus         1 ~~~~~~l~~ei~~L~~el~~-~r~-~vS~a~~~li~y~~~~~DPll~~~~~p~~-~~~NPw~~~~   62 (68)
T PF00631_consen    1 KQEKDQLKREIEQLRQELER-ERI-KVSKACKELIEYCESTPDPLLPGPWGPPS-SSSNPWIEKD   62 (68)
T ss_dssp             -THHHHHHHHHHHHHHHHTS------HHHHHHHHHHHHHGTC-HHHHT--SS---GGGSTTCC-S
T ss_pred             ChHHHHHHHHHHHHHHHHcc-cce-eHHHHHHHHHHHhcCCCCceeCCCCCCCC-ccCCCCcCCC
Confidence            46789999999999999999 999 99999999999999999999999987764 6667888873

The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....

>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors

Probab=97.45  E-value=0.00023  Score=48.34  Aligned_cols=48  Identities=21%  Similarity=0.353  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhc--CCCCcccccCCCc
Q 037836           28 QVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAK--SDPLIPVNRKNRR   77 (163)
Q Consensus        28 q~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~--pDPLLP~t~g~~~   77 (163)
                      +++.++|.+|+.||+- + --+||.++.|++.|++..  .||||+...++.|
T Consensus         2 ~~~~~~veqLr~el~~-~-RikvS~a~~~l~~y~e~~~~~Dpll~g~~~~~N   51 (57)
T cd00068           2 DQLKKEVEQLRKELSR-E-RLKVSKAAAELLKYCEQNAENDPLLTGPPSPSN   51 (57)
T ss_pred             HHHHHHHHHHHHHHCC-c-hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Confidence            5788889999999874 4 568999999999999999  9999987765545

>smart00224 GGL G protein gamma subunit-like motifs

Probab=96.45  E-value=0.005  Score=42.54  Aligned_cols=43  Identities=26%  Similarity=0.422  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCcccc
Q 037836           28 QVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIPVN   72 (163)
Q Consensus        28 q~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP~t   72 (163)
                      +++.+||.+|++||+- + --+||.++.+++.|++  ..-||||.-.
T Consensus         2 ~~~~~~ve~Lr~el~~-~-RikvS~a~~~li~y~e~~~~~DP~l~g~   46 (63)
T smart00224        2 DQLRKEVEQLRKELSR-E-RIKVSKAAEELLAYCEQHAEEDPLLTGP   46 (63)
T ss_pred             hHHHHHHHHHHHHHCC-c-eehHHHHHHHHHHHHHcCCCCCCCcCCC
Confidence            5788999999999975 3 5689999999999999  5677777443

>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]

Probab=95.73  E-value=0.018  Score=41.88  Aligned_cols=52  Identities=17%  Similarity=0.308  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcC--CCCcccccCCCc
Q 037836           24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKS--DPLIPVNRKNRR   77 (163)
Q Consensus        24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~p--DPLLP~t~g~~~   77 (163)
                      .+++.++.+++..|..|+. +| -.+||.+.+||.+|+|+..  ||||-.-...+|
T Consensus         6 ~~~~~q~k~~VeqLk~e~~-~~-R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~~N   59 (71)
T KOG4119|consen    6 NSKKPQMKKEVEQLKLEAN-IE-RIKVSKAAAELLEYCETHATEDPLLEGVPEKEN   59 (71)
T ss_pred             ccchHHHHHHHHHHHHHHH-hh-HhhHHHHHHHHHHHHHhcCccCccccCCccccC
Confidence            3456777888888888876 34 6789999999999999988  999977666666

>PRK14011 prefoldin subunit alpha; Provisional

Probab=95.52  E-value=0.017  Score=45.94  Aligned_cols=54  Identities=19%  Similarity=0.310  Sum_probs=47.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccC
Q 037836           21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRK   74 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g   74 (163)
                      ..++++|++|.+||..|+++|+.|+.+..=-..++|.++.+....+=|+|+|.|
T Consensus         6 q~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s   59 (144)
T PRK14011          6 QNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPG   59 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCC
Confidence            457889999999999999999999987776678889998888888999999876

>PRK01203 prefoldin subunit alpha; Provisional

Probab=94.45  E-value=0.048  Score=43.20  Aligned_cols=54  Identities=13%  Similarity=0.163  Sum_probs=43.4

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCcccccC
Q 037836           21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIPVNRK   74 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP~t~g   74 (163)
                      +-..++++.|++||..|+++|++|+....=-..++|.+..+.  ...+=|+|+|.|
T Consensus         3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~s   58 (130)
T PRK01203          3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSG   58 (130)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCC
Confidence            346789999999999999999999887766667777777753  567778999876

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=93.46  E-value=0.1  Score=38.55  Aligned_cols=52  Identities=15%  Similarity=0.301  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhc--CCCCcccccC
Q 037836           23 ELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAK--SDPLIPVNRK   74 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~--pDPLLP~t~g   74 (163)
                      +++++++|++||..|+..+.+|+..-+--...+|+++++..+  .+=|+|++.+
T Consensus         4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~   57 (126)
T TIGR00293         4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAG   57 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCC
Confidence            566777777777777777777777766666778999999876  3447788765

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=92.25  E-value=0.23  Score=37.57  Aligned_cols=54  Identities=19%  Similarity=0.297  Sum_probs=41.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh---cCCCCcccccC
Q 037836           21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA---KSDPLIPVNRK   74 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves---~pDPLLP~t~g   74 (163)
                      ..+++.+++|+++|..|+.++.+|+..-+--...+|.++++..   ..+=|+|++.+
T Consensus         9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~   65 (140)
T PRK03947          9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAG   65 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCC
Confidence            3567778889999999999999888887777788888888874   44456676654

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=92.09  E-value=0.23  Score=39.84  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcC---CCCcccccC
Q 037836           21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKS---DPLIPVNRK   74 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~p---DPLLP~t~g   74 (163)
                      .++.|+++.|++||..|+.+|..|+.+..-=+-++|-++++.+..   -=|+|+..|
T Consensus         9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag   65 (145)
T COG1730           9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAG   65 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCC
Confidence            478899999999999999999999988888888999999998877   668887765

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=90.85  E-value=0.11  Score=43.07  Aligned_cols=66  Identities=12%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccCCCchhhHHH
Q 037836           18 YGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWK   83 (163)
Q Consensus        18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g~~~s~~~~r   83 (163)
                      .....+.+|.++|++|+..|+.|+.+++.+..-..--++++++....+-.+++..-=.++...|++
T Consensus        69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~~~~i~A~Vi~~~~~~~~~  134 (276)
T PRK13922         69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDYQFITARVISRSPDPWSQ  134 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCceEEEEEEEeCCCCcee
Confidence            346678889999999999999999999888888888899988887766455554433333334433

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=89.97  E-value=0.49  Score=31.42  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836           20 KRRELAKVQVLEREISFLEEELKTV   44 (163)
Q Consensus        20 KhR~~Aelq~LeqEI~fLEEEL~~L   44 (163)
                      ..|...+++++++|++-||.|+++|
T Consensus        43 ~~~~r~~~~~~~k~l~~le~e~~~l   67 (68)
T PF06305_consen   43 RLRLRRRIRRLRKELKKLEKELEQL   67 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4677788999999999999999876

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.70  E-value=0.56  Score=36.43  Aligned_cols=41  Identities=24%  Similarity=0.265  Sum_probs=34.3

Q ss_pred             CCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhh
Q 037836           12 PEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASR   52 (163)
Q Consensus        12 P~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~   52 (163)
                      .+.|..---.|++++|.++|-|+..|++||..|+.....-+
T Consensus        10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~   50 (120)
T PF12325_consen   10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELR   50 (120)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777789999999999999999999999988765443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=88.63  E-value=0.74  Score=34.15  Aligned_cols=53  Identities=25%  Similarity=0.360  Sum_probs=39.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh---cCCCCcccccC
Q 037836           22 RELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA---KSDPLIPVNRK   74 (163)
Q Consensus        22 R~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves---~pDPLLP~t~g   74 (163)
                      .+++.+++|++||..|+.+++.|+....--...++.++.+..   ..+=|+|++.+
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~   58 (129)
T cd00584           3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAG   58 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCC
Confidence            356778888888888888888888777777777787777764   44567777654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=86.75  E-value=1.3  Score=29.18  Aligned_cols=28  Identities=29%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836           18 YGKRRELAKVQVLEREISFLEEELKTVD   45 (163)
Q Consensus        18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE   45 (163)
                      +.|.|..+.++.|++++.+|++|..+|+
T Consensus        18 r~R~rkk~~~~~le~~~~~L~~en~~L~   45 (54)
T PF07716_consen   18 RSRQRKKQREEELEQEVQELEEENEQLR   45 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777778888888888888877774

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6

Probab=86.03  E-value=0.99  Score=30.89  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccc
Q 037836           23 ELAKVQVLEREISFLEEELKTVDRF   47 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE~~   47 (163)
                      +.+|+++|++|+.-|+.+|+.+++.
T Consensus         2 ~~~E~~rL~Kel~kl~~~i~~~~~k   26 (66)
T PF10458_consen    2 VEAEIERLEKELEKLEKEIERLEKK   26 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999888753

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []

Probab=86.02  E-value=1.1  Score=32.97  Aligned_cols=25  Identities=28%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836           21 RRELAKVQVLEREISFLEEELKTVD   45 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE   45 (163)
                      |-|+-|-.+|++||+-||+||+++-
T Consensus         3 ~ei~eEn~~Lk~eiqkle~ELq~~~   27 (76)
T PF07334_consen    3 HEIQEENARLKEEIQKLEAELQQNK   27 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788899999999999999998854

This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=85.21  E-value=2  Score=31.47  Aligned_cols=48  Identities=23%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836           20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP   67 (163)
Q Consensus        20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP   67 (163)
                      +....++|..|..+|..|+.++..+|..=.-....+++++.|....+-
T Consensus        76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~~~e  123 (126)
T PF13863_consen   76 KEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPKSPE  123 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            445667778888888888877777777666667788888887666553

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=83.75  E-value=1.7  Score=35.40  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             CCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhh
Q 037836           15 PDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASR   52 (163)
Q Consensus        15 pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~   52 (163)
                      .+...|.+++++++.|++|+..|+.||+.+...+|...
T Consensus       100 ~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i  137 (188)
T PF03962_consen  100 EESEEREELLEELEELKKELKELKKELEKYSENDPEKI  137 (188)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            45578899999999999999999999999988888654

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=82.72  E-value=2  Score=28.24  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=20.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836           22 RELAKVQVLEREISFLEEELKTVD   45 (163)
Q Consensus        22 R~~Aelq~LeqEI~fLEEEL~~LE   45 (163)
                      -+..+|+.|+.|...|+.++..|+
T Consensus        29 ~le~~~~~L~~en~~L~~~i~~L~   52 (54)
T PF07716_consen   29 ELEQEVQELEEENEQLRQEIAQLE   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            466788999999999999998886

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.46  E-value=2.5  Score=28.25  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 037836           24 LAKVQVLEREISFLEEELKTV   44 (163)
Q Consensus        24 ~Aelq~LeqEI~fLEEEL~~L   44 (163)
                      +.+++.|++|+..|++|++.|
T Consensus        30 ~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   30 QKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            344444555555555555555

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein)

Probab=81.15  E-value=3.3  Score=29.92  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhh----cccCchhh---------hhHHHHHhhhhcCC
Q 037836           23 ELAKVQVLEREISFLEEELKTV----DRFHPASR---------SCKEVADFVVAKSD   66 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~L----E~~~paS~---------~CKEv~~~Ves~pD   66 (163)
                      +..=|+.|+.|++.|.-|+.+|    ..++++..         -.++++.-+|.+.|
T Consensus        15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~d   71 (79)
T PF06657_consen   15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKAD   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566666666665555554    33333331         45566666666654

It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].

>PRK06342 transcription elongation factor regulatory protein; Validated

Probab=80.34  E-value=3.1  Score=33.43  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=24.0

Q ss_pred             CCCCCCC-CCCCCchhhhHhHHHHHHHHHHHHHH
Q 037836            5 PPCPKSP-PEYPDLYGKRRELAKVQVLEREISFL   37 (163)
Q Consensus         5 ~p~PKsP-P~~pD~~GKhR~~Aelq~LeqEI~fL   37 (163)
                      +++|.++ +.|--..|..++++||++|..+|.-.
T Consensus        20 ~~r~~~~~~~~lT~~G~~~L~~El~~L~~~i~~A   53 (160)
T PRK06342         20 PDRPISPHPNLVTEAGLKALEDQLAQARAAYEAA   53 (160)
T ss_pred             CCCCCCCCCceECHHHHHHHHHHHHHHHHHHHHH
Confidence            4566544 56667789999999999997766554

>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation []

Probab=80.23  E-value=0.48  Score=35.55  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=0.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836           20 KRRELAKVQVLEREISFLEEELKTV   44 (163)
Q Consensus        20 KhR~~Aelq~LeqEI~fLEEEL~~L   44 (163)
                      |-+++.+++.||++|.+|+.||++|
T Consensus         8 k~~laK~~~~LE~~l~~l~~el~~L   32 (118)
T PF08286_consen    8 KFRLAKELSDLESELESLQSELEEL   32 (118)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555444433

; PDB: 2VE7_D 2FV4_B 2FTX_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1got_G	73	GT-gamma; complex (GTP-binding/transducer), G prot	96.24
3v5w_G	77	G gamma-I, guanine nucleotide-binding protein G(I)	94.97
2er8_A	72	Regulatory protein Leu3; Zn(2)Cys(6) binuclear clu	92.81
4dac_A	28	Computationally designed crystal forming protein;	91.77
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	91.7
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	91.25
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	90.5
1zme_C	70	Proline utilization transcription activator; compl	90.44
2wg5_A	109	General control protein GCN4, proteasome-activatin	89.93
1pwb_A	177	SP-D, PSP-D, pulmonary surfactant-associated prote	87.59
1buu_A	168	Protein (mannose-binding protein A); lectin, HOST	86.58
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	85.46
1uk5_A	111	BAG-family molecular chaperone regulator-3; triple	85.1
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	84.85
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	84.66
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	84.65
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	84.63
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	84.02
2jn6_A	97	Protein CGL2762, transposase; GFT PSI-2, protein s	83.92
2rjz_A	147	PILO protein; structural genomics, unknown functio	83.2
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	82.69
1rtm_1	149	Mannose-binding protein-A; lectin; 1.80A {Rattus n	82.26
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	82.14
1htn_A	182	Tetranectin; plasminogen binding, kringle 4, alpha	81.57
2wuj_A	57	Septum site-determining protein diviva; bacterial	80.97
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	80.02

>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*

Probab=96.24  E-value=0.002  Score=45.41  Aligned_cols=56  Identities=27%  Similarity=0.443  Sum_probs=41.4

Q ss_pred             CchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCccccc
Q 037836           16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIPVNR   73 (163)
Q Consensus        16 D~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP~t~   73 (163)
                      |..---+-++.+++|.+++.+|+.||+ ++.+ ++|.++.|++.|++  +.-||||+--.
T Consensus         8 ~~~~~~~~~~~~~~lr~~veqLr~el~-~~Ri-kVS~aa~~L~~Yce~~~~~DpLl~g~~   65 (73)
T 1got_G            8 DPVINIEDLTEKDKLKMEVDQLKKEVT-LERM-LVSKCCEEFRDYVEERSGEDPLVKGIP   65 (73)
T ss_dssp             --------CTHHHHHHHHHHHHHHHTT-CCCC-CHHHHHHHHHHHHHHHGGGCHHHHCCC
T ss_pred             CchhhhcccccHHHHHHHHHHHHHHHC-Cchh-hHHHHHHHHHHHHHhcCCCCCCcCCCC
Confidence            333344566889999999999999994 5554 79999999999999  56999997543

>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*

Probab=94.97  E-value=0.021  Score=41.04  Aligned_cols=59  Identities=20%  Similarity=0.346  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh--cCCCCcccccCCCchhhHHHHHhC
Q 037836           27 VQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA--KSDPLIPVNRKNRRSCRFWKWLCG   87 (163)
Q Consensus        27 lq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves--~pDPLLP~t~g~~~s~~~~rW~~~   87 (163)
                      |+++.+.+..|.-|.. +|.+ +||.+.+||++|++.  ..||||--.....|.++=.+|+..
T Consensus        15 i~q~rk~VeQLr~Ea~-i~Ri-kVSqaaadL~~yc~~~~~~DpLl~Gvp~~~NPFkeKk~~c~   75 (77)
T 3v5w_G           15 IAQARKLVEQLKMEAN-IDRI-KVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFSA   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHS-SCCC-CHHHHHHHHHHHHHHSGGGCTTTSCCCGGGCTTTTC-----
T ss_pred             HHHHHHHHHHHHHHhc-cchh-hHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCCCCCcCccc
Confidence            5666667777776654 5554 699999999999997  789999655555576666666653

>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A

Probab=92.81  E-value=0.08  Score=34.43  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccc
Q 037836           23 ELAKVQVLEREISFLEEELKTVDRF   47 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE~~   47 (163)
                      ....|+.||++|..||+.|++|+..
T Consensus        47 ~~~~~~~Le~ri~~Le~~l~~l~~~   71 (72)
T 2er8_A           47 KRARNEAIEKRFKELTRTLTNLTSD   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3477999999999999999998754

>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}

Probab=91.77  E-value=0.15  Score=30.60  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=20.2

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhh
Q 037836           21 RRELAKVQVLEREISFLEEELKTV   44 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~L   44 (163)
                      .++-|.+++||+|++-||.|...|
T Consensus         4 ykldanvkrlekevgklegevarl   27 (28)
T 4dac_A            4 YKLDANVKRLEKEVGKLEGEVARL   27 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             eeccccHHHHHHHHhhhhhhhhhc
Confidence            357789999999999999987654

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=91.70  E-value=0.15  Score=37.10  Aligned_cols=54  Identities=11%  Similarity=0.262  Sum_probs=43.6

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCcccccC
Q 037836           21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIPVNRK   74 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP~t~g   74 (163)
                      .++++.+++|++++..|++++++|+...+--.-.+|.++.+.  ...+=|.|++.+
T Consensus         4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~   59 (133)
T 1fxk_C            4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAG   59 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCC
Confidence            467888999999999999999999988888888888888887  344556666654

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=91.25  E-value=0.23  Score=29.74  Aligned_cols=25  Identities=36%  Similarity=0.430  Sum_probs=22.2

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836           21 RRELAKVQVLEREISFLEEELKTVD   45 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE   45 (163)
                      +|+..+-.+|.|||.-||-|+..||
T Consensus         3 rrlkqknarlkqeiaaleyeiaale   27 (28)
T 3ra3_B            3 RRLKQKNARLKQEIAALEYEIAALE   27 (28)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            6777888899999999999998887

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=90.50  E-value=0.1  Score=46.14  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcC--CCCcccc
Q 037836           26 KVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKS--DPLIPVN   72 (163)
Q Consensus        26 elq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~p--DPLLP~t   72 (163)
                      -++.+.+||.+|+-|| ..+.+ ++|.++.+++.++|...  ||||.-.
T Consensus       220 ~~~~~r~~veqLk~~l-~~~ri-kvS~~~e~l~~y~e~~~~~DPll~g~  266 (424)
T 2pbi_A          220 TVTAVRKEIMYYQQAL-MRSTV-KSSVSLGGIVKYSEQFSSNDAIMSGC  266 (424)
T ss_dssp             CHHHHHHHHHHHHHHH-HSCCC-CHHHHHHHHHHHHHHHGGGCHHHHCC
T ss_pred             cHHHHHHHHHHHHHHh-cccce-eHHHHHHHHHHHHHhhccCCCccccC
Confidence            3567888999999998 45554 69999999999998765  9998544

>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A

Probab=90.44  E-value=0.14  Score=32.94  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc
Q 037836           25 AKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        25 Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      ..|+.|+++|..||++|++|+.
T Consensus        44 ~~~~~L~~ri~~Le~~l~~l~~   65 (70)
T 1zme_C           44 KYLQQLQKDLNDKTEENNRLKA   65 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3478889999999988888864

>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A

Probab=89.93  E-value=0.29  Score=35.70  Aligned_cols=35  Identities=17%  Similarity=0.069  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHH
Q 037836           23 ELAKVQVLEREISFLEEELKTVDRFHPASRSCKEV   57 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv   57 (163)
                      ++++++.|++||..|+|||+.|.+..-.-.-.-|+
T Consensus        12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~   46 (109)
T 2wg5_A           12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDI   46 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence            67899999999999999999999876543333333

>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...

Probab=87.59  E-value=0.39  Score=35.32  Aligned_cols=20  Identities=15%  Similarity=0.413  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 037836           27 VQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        27 lq~LeqEI~fLEEEL~~LE~   46 (163)
                      |+.|+++|+.|+++|.+|++
T Consensus        33 l~~L~~~l~~Lq~~l~~l~~   52 (177)
T 1pwb_A           33 VEALQGQVQHLQAAFSQYKK   52 (177)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            66777888888888877654

>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1

Probab=86.58  E-value=0.44  Score=34.93  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836           22 RELAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        22 R~~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      =+..+|+.|+++|+.|+.+|.+|++
T Consensus        20 ~~~~~l~~L~~~~~~L~~~l~~l~~   44 (168)
T 1buu_A           20 AIEVKLANMEAEINTLKSKLELTNK   44 (168)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4555688999999999999988765

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=85.46  E-value=1  Score=29.55  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836           18 YGKRRELAKVQVLEREISFLEEELKTVD   45 (163)
Q Consensus        18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE   45 (163)
                      +.+.|.++-|+.||.++..|++|-.+|.
T Consensus        15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~   42 (55)
T 1dh3_A           15 ESRRKKKEYVKSLENRVAVLENQNKTLI   42 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888999999999999998877764

>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1

Probab=85.10  E-value=1.6  Score=32.88  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             CCCCCCCCCC-CCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836            2 SLPPPCPKSP-PEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFH   48 (163)
Q Consensus         2 ~l~~p~PKsP-P~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~   48 (163)
                      +.++++|..| |...|.--+|....+|+.+..|+.-|+++.+++.|..
T Consensus         6 ~~~~~e~~~~~~~~~~~~~~~p~~~~I~~I~~eV~~L~~qV~~f~g~k   53 (111)
T 1uk5_A            6 SGAPAEPAAPKSGEAETPPKHPGVLKVEAILEKVQGLEQAVDSFEGKK   53 (111)
T ss_dssp             CCCCCCCCCCCCCSSSSCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3344444444 4445777778877888888888888888877776643

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=84.85  E-value=0.99  Score=29.33  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836           21 RRELAKVQVLEREISFLEEELKTVDRF   47 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE~~   47 (163)
                      .|+-+||++.|++|.-||.-|++||..
T Consensus        12 ~kVdrEI~Kte~kI~~lqkKlkeLee~   38 (42)
T 2l5g_B           12 DRVDREITMVEQQISKLKKKQQQLEEE   38 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467788888888888888888888753

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=84.66  E-value=0.93  Score=28.27  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhc
Q 037836           23 ELAKVQVLEREISFLEEELKTVD   45 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE   45 (163)
                      -|++|..|.++...||+++..||
T Consensus        12 ~qqDIddlkrQN~~Le~Qir~le   34 (34)
T 1a93_B           12 HQQDIDDLKRQNALLEQQVRALX   34 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hHhhHHHHHHHHHHHHHHHHhcC
Confidence            46789999999999999999887

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=84.65  E-value=0.95  Score=30.93  Aligned_cols=21  Identities=19%  Similarity=0.498  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhc
Q 037836           25 AKVQVLEREISFLEEELKTVD   45 (163)
Q Consensus        25 Aelq~LeqEI~fLEEEL~~LE   45 (163)
                      +++..|.+|+..|+.+|..|+
T Consensus        61 ~e~~~L~~~~~~L~~~l~~L~   81 (83)
T 1nkp_B           61 QDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            344444444444444444443

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=84.63  E-value=0.93  Score=31.57  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=19.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836           22 RELAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        22 R~~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      +.|-||..|+++|.-||+++..|+.
T Consensus        19 keqrEle~le~~Ie~LE~~i~~le~   43 (89)
T 2lw1_A           19 KLQRELEQLPQLLEDLEAKLEALQT   43 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567788888888888888888764

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=84.02  E-value=0.62  Score=34.01  Aligned_cols=36  Identities=11%  Similarity=0.205  Sum_probs=30.2

Q ss_pred             CCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCch
Q 037836           15 PDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPA   50 (163)
Q Consensus        15 pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~pa   50 (163)
                      |--.-|.+++++|+.|++||.-...+-+.|++|..|
T Consensus        12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v   47 (98)
T 2ke4_A           12 PPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDV   47 (98)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334568899999999999999999888888888666

>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19

Probab=83.92  E-value=0.13  Score=34.70  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836           23 ELAKVQVLEREISFLEEELKTVDRFHP   49 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE~~~p   49 (163)
                      ..++|++|++|+..|+.|++.|.+..+
T Consensus        64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~   90 (97)
T 2jn6_A           64 EAEQIRQLKKENALQRARTRHPAESCL   90 (97)
T ss_dssp             THHHHHHHHHCGGGGGGTTSCCCGGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999988888776543

>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}

Probab=83.20  E-value=0.69  Score=34.97  Aligned_cols=46  Identities=13%  Similarity=0.198  Sum_probs=37.8

Q ss_pred             CchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhh
Q 037836           16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFV   61 (163)
Q Consensus        16 D~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~V   61 (163)
                      ++.-|.++.|+|.+|++|+..||++|+++...=|..+-=-+|++.|
T Consensus         6 ~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~~~em~~LL~~i   51 (147)
T 2rjz_A            6 QFSTKAFQAANLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDI   51 (147)
T ss_dssp             HHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            3566889999999999999999999999998887776555566555

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=82.69  E-value=1  Score=38.12  Aligned_cols=25  Identities=12%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836           22 RELAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        22 R~~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      |+.++++.|.+||..|++||+.|-.
T Consensus        72 ~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           72 KLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3677889999999999999998854

>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*

Probab=82.26  E-value=1  Score=31.90  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836           23 ELAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      +..+|+.||++|+-||.+|++|++
T Consensus         2 ~~~~l~~l~~~~~~l~~~l~~l~~   25 (149)
T 1rtm_1            2 IEVKLANMEAEINTLKSKLELTNK   25 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345688888888888888887765

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=82.14  E-value=1  Score=33.36  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhhhHHHHHh
Q 037836           28 QVLEREISFLEEELKTVDRFHPASRSCKEVADF   60 (163)
Q Consensus        28 q~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~   60 (163)
                      +.|+.||.-|+.|+..||+++.-++.-|-=..+
T Consensus        50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~   82 (96)
T 1t3j_A           50 KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQ   82 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            568899999999999999998877766543333

>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1

Probab=81.57  E-value=0.48  Score=34.99  Aligned_cols=24  Identities=13%  Similarity=0.182  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccc
Q 037836           24 LAKVQVLEREISFLEEELKTVDRF   47 (163)
Q Consensus        24 ~Aelq~LeqEI~fLEEEL~~LE~~   47 (163)
                      ...|+.|+++|..|++||..|..+
T Consensus        21 ~~~~~~L~~~~~~l~~~l~~l~~~   44 (182)
T 1htn_A           21 TKMFEELKSRLDTLSQEVALLKEQ   44 (182)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455677888888888888877755

>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A

Probab=80.97  E-value=1.5  Score=28.80  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=19.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836           22 RELAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        22 R~~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      ++..++..|.+|+.-|+++|+.|+.
T Consensus        31 ~v~~~~~~l~~e~~~L~~~~~~l~~   55 (57)
T 2wuj_A           31 QVRKDYEIVLRKKTELEAKVNELDE   55 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677888999999999999998874

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=80.02  E-value=1.9  Score=30.34  Aligned_cols=25  Identities=12%  Similarity=0.287  Sum_probs=17.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836           22 RELAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        22 R~~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      ++++++.+|.+|...|+.+|++|+|
T Consensus        63 ~l~~~~~~L~~~n~~L~~rl~~L~~   87 (88)
T 1nkp_A           63 KLISEEDLLRKRREQLKHKLEQLGG   87 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555666777777778888877765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1gg2g_	54	Transducin (heterotrimeric G protein), gamma chain	96.17
d1tbge_	68	Transducin (heterotrimeric G protein), gamma chain	95.35
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	94.21
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	87.33
d1tbga_	340	beta1-subunit of the signal-transducing G protein	85.07
d1ivsa1	66	Valyl-tRNA synthetase (ValRS) C-terminal domain {T	83.45
d1uk5a_	111	BAG-family molecular chaperone regulator-3 {Mouse	83.4

>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Transducin (heterotrimeric G protein), gamma chain
family: Transducin (heterotrimeric G protein), gamma chain
domain: Transducin (heterotrimeric G protein), gamma chain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.17  E-value=0.0033  Score=40.51  Aligned_cols=42  Identities=24%  Similarity=0.465  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCcc
Q 037836           27 VQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIP   70 (163)
Q Consensus        27 lq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP   70 (163)
                      |+++.++|..|+-|++ ++.+ ++|.++.|++.|+|  +.-||||-
T Consensus         2 i~q~rk~VeqLr~e~~-~~Ri-kvS~aa~~l~~y~e~~~~~Dpll~   45 (54)
T d1gg2g_           2 IAQARKLVEQLKMEAN-IDRI-KVSKAAADLMAYCEAHAKEDPLLT   45 (54)
T ss_dssp             HHHHHHHHHHHHHHHS-SCCC-CHHHHHHHHHHHHHHHGGGCTTTS
T ss_pred             HHHHHHHHHHHHHHhC-Cchh-hHHHHHHHHHHHHHhcCcCCCCcC
Confidence            5778889999998885 4443 79999999999999  78999994

>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Transducin (heterotrimeric G protein), gamma chain
family: Transducin (heterotrimeric G protein), gamma chain
domain: Transducin (heterotrimeric G protein), gamma chain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.35  E-value=0.0028  Score=42.85  Aligned_cols=43  Identities=30%  Similarity=0.608  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCcc
Q 037836           26 KVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIP   70 (163)
Q Consensus        26 elq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP   70 (163)
                      ++++|..++..|+-|++ ++.+ ++|.++.||.+|+|  +..||||-
T Consensus        11 d~~~lk~~VeQLr~Ea~-i~R~-~VS~aa~dl~~yce~~~~~DpLl~   55 (68)
T d1tbge_          11 EKDKLKMEVDQLKKEVT-LERM-LVSKCCEEFRDYVEERSGEDPLVK   55 (68)
T ss_dssp             TTHHHHHHHHHHHHHHT-CCCC-CHHHHHHHHHHHHHTTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHHHhc-Cchh-hHHHHHHHHHHHHHhcCCCCCccc
Confidence            34444445555554443 5554 79999999999999  77899984

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.21  E-value=0.018  Score=40.07  Aligned_cols=54  Identities=11%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcC--CCCcccccC
Q 037836           21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKS--DPLIPVNRK   74 (163)
Q Consensus        21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~p--DPLLP~t~g   74 (163)
                      +++++++++|+++|..|+++|+.|+..-.--..-++.+..+..+.  +=|+|++.|
T Consensus         4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~   59 (133)
T d1fxkc_           4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAG   59 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCc
Confidence            578899999999999999999999887766666777777766443  457777765

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=87.33  E-value=0.096  Score=39.54  Aligned_cols=40  Identities=28%  Similarity=0.252  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcC
Q 037836           26 KVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKS   65 (163)
Q Consensus        26 elq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~p   65 (163)
                      ++++|+++..-|+|-|++++.....+..-+++++|+++..
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~s~  251 (259)
T d1j2za_         212 LYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFILESS  251 (259)
T ss_dssp             HHHHHTCSSSCHHHHHHHHHHHTSSCHHHHHHHHHHHHCS
T ss_pred             HHHHHHhcCCCHHHHHHHHHHhccCCHHHHHHHHHHHcCC
Confidence            3444555555677778777777777888899999997643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.07  E-value=0.15  Score=34.78  Aligned_cols=23  Identities=13%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcc
Q 037836           24 LAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        24 ~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      ||||+.|+||+..|+++|++.+.
T Consensus         1 ~~~~~~l~~~~~~l~~~~~~~~~   23 (340)
T d1tbga_           1 MSELDQLRQEAEQLKNQIRDARK   23 (340)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999988764

>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Valyl-tRNA synthetase (ValRS) C-terminal domain
domain: Valyl-tRNA synthetase (ValRS) C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.45  E-value=0.45  Score=29.89  Aligned_cols=24  Identities=13%  Similarity=-0.050  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836           23 ELAKVQVLEREISFLEEELKTVDR   46 (163)
Q Consensus        23 ~~Aelq~LeqEI~fLEEEL~~LE~   46 (163)
                      +.+|+++|+.++..|+.|++.+++
T Consensus         2 ~~~E~~RL~K~l~kl~~~i~~~~~   25 (66)
T d1ivsa1           2 VEEWRRRQEKRLKELLALAERSQR   25 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888888888888888887765

>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.40  E-value=1.9  Score=30.38  Aligned_cols=56  Identities=13%  Similarity=0.065  Sum_probs=39.0

Q ss_pred             CCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCc--hhhhhHHHHHhhhhcCCC
Q 037836           12 PEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHP--ASRSCKEVADFVVAKSDP   67 (163)
Q Consensus        12 P~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~p--aS~~CKEv~~~Ves~pDP   67 (163)
                      ....+.-.+|--+.+|+.+..++..|+.+++..+|...  .-.-..|+++-+--+=|-
T Consensus        17 ~~~~~~p~~~P~~~ki~~i~~~v~~L~~~V~~f~g~~~dkey~~L~E~L~~~LlkLD~   74 (111)
T d1uk5a_          17 SGEAETPPKHPGVLKVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTKELLALDS   74 (111)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCSSSHHHHHHHHHHHHHHHHHHS
T ss_pred             CcCcCCCCCCccHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHhcC
Confidence            33455567788888999999999999999999888433  444566666554444343