Citrus Sinensis ID: 037843
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 203 | 2.2.26 [Sep-21-2011] | |||||||
| P48261 | 190 | Anthranilate synthase com | N/A | no | 0.866 | 0.926 | 0.470 | 5e-42 | |
| Q08654 | 589 | Anthranilate synthase com | yes | no | 0.871 | 0.300 | 0.439 | 6e-38 | |
| P51362 | 189 | Anthranilate synthase com | N/A | no | 0.866 | 0.931 | 0.444 | 7e-38 | |
| Q1XDC5 | 189 | Anthranilate synthase com | N/A | no | 0.866 | 0.931 | 0.423 | 9e-37 | |
| P00901 | 198 | Anthranilate synthase com | yes | no | 0.857 | 0.878 | 0.424 | 1e-34 | |
| Q92370 | 759 | Anthranilate synthase com | yes | no | 0.866 | 0.231 | 0.440 | 6e-34 | |
| P20576 | 201 | Anthranilate synthase com | yes | no | 0.857 | 0.865 | 0.424 | 2e-33 | |
| P00903 | 187 | Para-aminobenzoate syntha | N/A | no | 0.857 | 0.930 | 0.414 | 2e-32 | |
| P00902 | 194 | Anthranilate synthase com | yes | no | 0.857 | 0.896 | 0.404 | 3e-31 | |
| P09575 | 367 | Anthranilate synthase com | N/A | no | 0.852 | 0.471 | 0.431 | 7e-31 |
| >sp|P48261|TRPG_CYAPA Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/189 (47%), Positives = 124/189 (65%), Gaps = 13/189 (6%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL QY+ EL +++ V RND++T+ E+K +G++ISP PG
Sbjct: 2 ILLIDNYDSFTYNLAQYLSELNIKVL------VKRNDKITLDEIKNLNIQGIIISPCPGG 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P++SGIS + LG +P+ C+G + IG G++ + ++++++ K
Sbjct: 56 PEDSGISQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIKAPKLIHGKPSIIFHDGK--- 112
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
G+ L NP TA RYH L+IEK+S DELE+TAWTEDGLIM +HKKYK L G+QFHP
Sbjct: 113 -GVFQNLKNPITATRYHSLIIEKESC-PDELEITAWTEDGLIMGIQHKKYKQLQGIQFHP 170
Query: 193 ESILTSEGK 201
ESILT GK
Sbjct: 171 ESILTESGK 179
|
Cyanophora paradoxa (taxid: 2762) EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 2EC: 7 |
| >sp|Q08654|TRPG_THEMA Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 120/189 (63%), Gaps = 12/189 (6%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
++VIDNYDSF YN+ QY+GE+E + EV+RNDE+T+ E++RK P +VISPGPG
Sbjct: 47 VIVIDNYDSFVYNIVQYIGEVEPDC----EIEVFRNDEITIEEIERKNPTHIVISPGPGR 102
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P+E+GIS V +P+ C+G + IG A G++ + + + +N K
Sbjct: 103 PEEAGISVDVVRHFSGKVPILGVCLGHQVIGYAFGGKIVHAKRILHGKTSKIVHNGK--- 159
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
G+ +G+ NP A RYH LV+E+ S + LE+TA ++DG IM +HK++ GVQFHP
Sbjct: 160 -GVFSGVKNPLVATRYHSLVVEEASL-PEVLEITAKSDDGEIMGLQHKEHPTF-GVQFHP 216
Query: 193 ESILTSEGK 201
ES+LT EGK
Sbjct: 217 ESVLTEEGK 225
|
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 2 EC: . EC: 4 EC: . EC: 2 EC: . EC: 1 EC: 8 |
| >sp|P51362|TRPG_PORPU Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 118/189 (62%), Gaps = 13/189 (6%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL Q +GEL G+ V RNDE+ V ++K+ P ++ISPGPG
Sbjct: 2 ILIIDNYDSFTYNLAQCVGEL------GHDVLVCRNDEIDVVKIKKLNPEKIIISPGPGK 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P ESGIS + L +P+ C+G + IG G + + + GK Y+++E+
Sbjct: 56 PTESGISLDVISSLAEYIPILGVCLGHQSIGYINGGSIIKVPKIM-HGKTSQIYHDRED- 113
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
L L NPF A RYH L+I++ +F ++ L VTAWT++ +IMA RHK YK L G+QFHP
Sbjct: 114 --LFINLPNPFIATRYHSLIIDRANFPTN-LAVTAWTDNNIIMACRHKHYKMLRGIQFHP 170
Query: 193 ESILTSEGK 201
ES+ T G+
Sbjct: 171 ESLWTVCGQ 179
|
Porphyra purpurea (taxid: 2787) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q1XDC5|TRPG_PORYE Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 114/189 (60%), Gaps = 13/189 (6%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL Q +GEL GY V RNDE+ + +K+ P ++ISPGPG
Sbjct: 2 ILIIDNYDSFTYNLAQCVGEL------GYDVLVCRNDEIDIPTIKQLNPNKIIISPGPGK 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P +SGIS + ++P+ C+G + IG GR+ + + + +Y+N ++
Sbjct: 56 PSDSGISLDVISSFSDSIPILGVCLGHQSIGYLNGGRIIKVSEIMHGKTSKIYHNNED-- 113
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
L L NPF A RYH L+I+ +F S L +TAWTE+ +IMA RHK + L G+QFHP
Sbjct: 114 --LFKTLPNPFIATRYHSLIIDNLNFPS-SLAITAWTENNIIMACRHKDNQMLRGIQFHP 170
Query: 193 ESILTSEGK 201
ES+ T G+
Sbjct: 171 ESLWTFYGQ 179
|
Porphyra yezoensis (taxid: 2788) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P00901|TRPG_PSEPU Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 19/193 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYN+ QY+GEL G +V RNDE+T+A+++ P +V+SPGP
Sbjct: 3 LMMIDNYDSFTYNVVQYLGEL------GAEVKVIRNDEMTIAQIEALNPERIVVSPGPCT 56
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+G+S +L +P+ C+G + IG+A G + V + V++ +
Sbjct: 57 PSEAGVSIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPVHHRDL--- 113
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT--EDGL---IMAARHKKYKHLHG 187
G+ GL+NP T RYH LV+++++ D LEVTAWT EDG IM RHK + G
Sbjct: 114 -GVFTGLNNPLTVTRYHSLVVKRETL-PDCLEVTAWTAHEDGSVDEIMGLRHKTLN-IEG 170
Query: 188 VQFHPESILTSEG 200
VQFHPESILT +G
Sbjct: 171 VQFHPESILTEQG 183
|
Pseudomonas putida (taxid: 303) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q92370|TRPG_SCHPO Anthranilate synthase component 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trp1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 115/193 (59%), Gaps = 17/193 (8%)
Query: 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG 73
PIV+IDNYDSFT+N+ QY+ LE + Y V+RNDE+TV EL++ P +V+SPGPG
Sbjct: 27 PIVMIDNYDSFTWNVVQYLSNLE----KRYPIMVFRNDEITVDELEKLNPLKLVLSPGPG 82
Query: 74 AP-QESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE 130
P ++ GI + +P+ CMGL+CI E + G+ V G+ + K
Sbjct: 83 HPARDGGICNEAISRFAGKIPILGVCMGLQCIFETMGGK------VDSAGEIIHGKVSKI 136
Query: 131 EADGL--LAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGV 188
DGL G+ + RYH L K S D L+VT+WTE+G+IM ARHKKY + GV
Sbjct: 137 NHDGLGFYQGIPQNISVTRYHSLA-GKISSLPDCLDVTSWTENGVIMGARHKKYA-IEGV 194
Query: 189 QFHPESILTSEGK 201
Q+HPESIL+ GK
Sbjct: 195 QYHPESILSEYGK 207
|
Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 5 EC: . EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 4 |
| >sp|P20576|TRPG_PSEAE Anthranilate synthase component II OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=trpG PE=4 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 118/193 (61%), Gaps = 19/193 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYNL QY GEL+ E+ +V RNDEL+V +++ P +V+SPGP
Sbjct: 2 LLMIDNYDSFTYNLVQYFGELKAEV------KVVRNDELSVEQIEALAPERIVLSPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+G+S + +PL C+G + IG+A G + V + +++ +
Sbjct: 56 PNEAGVSLAVIERFAGKLPLLGVCLGHQSIGQAFGGEVVRARQVMHGKTSPIHHKDL--- 112
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE--DGL---IMAARHKKYKHLHG 187
G+ AGL+NP T RYH LV++++S + LEVTAWT+ DG IM RHK ++ G
Sbjct: 113 -GVFAGLANPLTVTRYHSLVVKRESL-PECLEVTAWTQHADGSLDEIMGVRHKTL-NVEG 169
Query: 188 VQFHPESILTSEG 200
VQFHPESILT +G
Sbjct: 170 VQFHPESILTEQG 182
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P00903|PABA_ECOLI Para-aminobenzoate synthase glutamine amidotransferase component II OS=Escherichia coli (strain K12) GN=pabA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFT+NL QY EL G V RND LT+A++ KP+ +VISPGP
Sbjct: 2 ILLIDNYDSFTWNLYQYFCEL------GADVLVKRNDALTLADIDALKPQKIVISPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS + +P+ C+G + + +A G++ V + + +N
Sbjct: 56 PDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHN----G 111
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
+G+ GL+NP T RYH LV+E DS + +VTAW+E IM RH+++ L GVQFHP
Sbjct: 112 EGVFRGLANPLTVTRYHSLVVEPDSLPA-CFDVTAWSETREIMGIRHRQWD-LEGVQFHP 169
Query: 193 ESILTSEG 200
ESIL+ +G
Sbjct: 170 ESILSEQG 177
|
Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 5 |
| >sp|P00902|TRPG_ACIAD Anthranilate synthase component 2 OS=Acinetobacter sp. (strain ADP1) GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 117/193 (60%), Gaps = 19/193 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYN+ QY GEL ++ +V RND++T+ +++R +P+ +V+ PGP +
Sbjct: 2 LLMIDNYDSFTYNIVQYFGELNQDV------KVVRNDQVTLEDIERWQPKYLVVGPGPCS 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS + +PL C+G + IG+A G + V + +Y+ +K
Sbjct: 56 PTEAGISIPAIHHFAGRIPLLGVCLGHQAIGQAFGGNIIRAKTVMHGRLSDMYHTDK--- 112
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT--EDGL---IMAARHKKYKHLHG 187
G+ + L +PF+A RYH LVIE++S + LEVT WT DG IM +HK + G
Sbjct: 113 -GIFSNLPSPFSATRYHSLVIEQESL-PECLEVTCWTNQNDGSIEEIMGVKHKTLP-VEG 169
Query: 188 VQFHPESILTSEG 200
VQFHPESIL+ G
Sbjct: 170 VQFHPESILSQHG 182
|
Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P09575|TRPG_PICAN Anthranilate synthase component 2 (Fragment) OS=Pichia angusta PE=4 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 113/190 (59%), Gaps = 17/190 (8%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+V+IDNYDSFT+NL +Y+ + +G + EV+RND++T+ E+++ KP VVISPGPG
Sbjct: 8 VVMIDNYDSFTWNLYEYLCQ------EGANVEVFRNDQITIPEIEQLKPDVVVISPGPGH 61
Query: 75 PQ-ESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRL-YVLLLVSCMGKALVYYNEKE 130
P+ +SGIS + +P+F CMG +CI E G + Y +V GK K
Sbjct: 62 PRTDSGISRDVISHFKGKIPVFGVCMGQQCIFEEFGGDVEYAGEIVH--GKTSTV---KH 116
Query: 131 EADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQF 190
+ G+ + RYH L S D LE+TA T++G+IM RHKKY + GVQF
Sbjct: 117 DNKGMFKNVPQDVAVTRYHSLAGTLKSL-PDCLEITARTDNGIIMGVRHKKYT-IEGVQF 174
Query: 191 HPESILTSEG 200
HPESILT EG
Sbjct: 175 HPESILTEEG 184
|
Pichia angusta (taxid: 870730) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 203 | ||||||
| 356521181 | 276 | PREDICTED: anthranilate synthase compone | 0.955 | 0.702 | 0.739 | 4e-78 | |
| 356558733 | 272 | PREDICTED: anthranilate synthase compone | 0.940 | 0.702 | 0.731 | 4e-77 | |
| 356558731 | 278 | PREDICTED: anthranilate synthase compone | 0.940 | 0.687 | 0.731 | 4e-77 | |
| 224101933 | 240 | anthranilate synthase, beta subunit, ASB | 0.916 | 0.775 | 0.75 | 2e-76 | |
| 224108213 | 276 | anthranilate synthase, beta subunit, ASB | 0.906 | 0.666 | 0.747 | 3e-76 | |
| 255573238 | 281 | Anthranilate synthase component II, puta | 0.926 | 0.669 | 0.727 | 8e-75 | |
| 217072976 | 270 | unknown [Medicago truncatula] gi|3884985 | 0.950 | 0.714 | 0.707 | 2e-74 | |
| 449449078 | 276 | PREDICTED: anthranilate synthase compone | 0.921 | 0.677 | 0.710 | 3e-74 | |
| 297845630 | 277 | hypothetical protein ARALYDRAFT_472860 [ | 0.921 | 0.675 | 0.710 | 6e-74 | |
| 25403004 | 469 | probable anthranilate synthase beta subu | 0.926 | 0.400 | 0.696 | 9e-74 |
| >gi|356521181|ref|XP_003529236.1| PREDICTED: anthranilate synthase component II-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 153/207 (73%), Positives = 167/207 (80%), Gaps = 13/207 (6%)
Query: 2 NEVLKLSKNDK---NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL 58
N V +S N K NPIVVIDNYDSFTYNLCQYMGEL G+HFEVYRNDELTV EL
Sbjct: 60 NAVEAISANKKSNNNPIVVIDNYDSFTYNLCQYMGEL------GFHFEVYRNDELTVEEL 113
Query: 59 KRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV 116
KRK PRGV+ISPGPGAPQ+SGIS +TVLELGPT+PLF CMGL+CIGEA G++
Sbjct: 114 KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRAPHG 173
Query: 117 SCMGKA-LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIM 175
GK+ +VYY+EK E DG+LAGLSNPF AGRYH LVIEK SF DELEVTAWTEDGLIM
Sbjct: 174 VMHGKSSMVYYDEKGE-DGVLAGLSNPFLAGRYHSLVIEKGSFPDDELEVTAWTEDGLIM 232
Query: 176 AARHKKYKHLHGVQFHPESILTSEGKT 202
AARHKKYKHL GVQFHPESI+T EGKT
Sbjct: 233 AARHKKYKHLQGVQFHPESIITPEGKT 259
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558733|ref|XP_003547657.1| PREDICTED: anthranilate synthase component II-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/201 (73%), Positives = 164/201 (81%), Gaps = 10/201 (4%)
Query: 5 LKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPR 64
+ K++ NPIVVIDNYDSFTYNLCQYMGEL G+HFEVYRNDELTV EL+RK PR
Sbjct: 62 ISAKKSNNNPIVVIDNYDSFTYNLCQYMGEL------GFHFEVYRNDELTVEELRRKNPR 115
Query: 65 GVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKA 122
GV+ISPGPG PQ+SGIS +TVLELGPT+PLF CMGL+CIGEA G++ GK+
Sbjct: 116 GVLISPGPGEPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPHGVMHGKS 175
Query: 123 -LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKK 181
+VYY+EK E DGLLAGLSNPF AGRYH LVIEK+SF DELE TAWTEDGLIMAARHKK
Sbjct: 176 SMVYYDEKGE-DGLLAGLSNPFLAGRYHSLVIEKESFPHDELEATAWTEDGLIMAARHKK 234
Query: 182 YKHLHGVQFHPESILTSEGKT 202
YKHL GVQFHPESI+T EGKT
Sbjct: 235 YKHLQGVQFHPESIITPEGKT 255
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558731|ref|XP_003547656.1| PREDICTED: anthranilate synthase component II-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/201 (73%), Positives = 164/201 (81%), Gaps = 10/201 (4%)
Query: 5 LKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPR 64
+ K++ NPIVVIDNYDSFTYNLCQYMGEL G+HFEVYRNDELTV EL+RK PR
Sbjct: 68 ISAKKSNNNPIVVIDNYDSFTYNLCQYMGEL------GFHFEVYRNDELTVEELRRKNPR 121
Query: 65 GVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKA 122
GV+ISPGPG PQ+SGIS +TVLELGPT+PLF CMGL+CIGEA G++ GK+
Sbjct: 122 GVLISPGPGEPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPHGVMHGKS 181
Query: 123 -LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKK 181
+VYY+EK E DGLLAGLSNPF AGRYH LVIEK+SF DELE TAWTEDGLIMAARHKK
Sbjct: 182 SMVYYDEKGE-DGLLAGLSNPFLAGRYHSLVIEKESFPHDELEATAWTEDGLIMAARHKK 240
Query: 182 YKHLHGVQFHPESILTSEGKT 202
YKHL GVQFHPESI+T EGKT
Sbjct: 241 YKHLQGVQFHPESIITPEGKT 261
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101933|ref|XP_002312481.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa] gi|222852301|gb|EEE89848.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/196 (75%), Positives = 163/196 (83%), Gaps = 10/196 (5%)
Query: 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68
K KNPI+VIDNYDSFTYNLCQYMGEL G HFEVYRNDELTV +LKRKKPRGV+I
Sbjct: 36 KGIKNPIIVIDNYDSFTYNLCQYMGEL------GCHFEVYRNDELTVEDLKRKKPRGVLI 89
Query: 69 SPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVY 125
SPGPG PQ+SGIS +TVLELGPT+PLF CMGL+CIGEA G++ GK + VY
Sbjct: 90 SPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSPVY 149
Query: 126 YNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHL 185
Y+EK E DGL +GLSNPFTAGRYH LVIEK+SF S+ELEVTAWTEDGLIMAARH+KYKHL
Sbjct: 150 YDEKGE-DGLFSGLSNPFTAGRYHSLVIEKESFPSEELEVTAWTEDGLIMAARHRKYKHL 208
Query: 186 HGVQFHPESILTSEGK 201
GVQFHPESI+TSEGK
Sbjct: 209 QGVQFHPESIITSEGK 224
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108213|ref|XP_002314761.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa] gi|222863801|gb|EEF00932.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 162/194 (83%), Gaps = 10/194 (5%)
Query: 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71
KNPI+VIDNYDSFTYNLCQYMGE+ G HFEVYRNDELTV +L+RKKPRGV+ISPG
Sbjct: 72 KNPIIVIDNYDSFTYNLCQYMGEV------GCHFEVYRNDELTVEDLERKKPRGVLISPG 125
Query: 72 PGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNE 128
PG PQ+SGIS +TVLELGPT+PLF CMGL+CIGEA G++ GK + VYY+E
Sbjct: 126 PGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPYGVVHGKGSPVYYDE 185
Query: 129 KEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGV 188
K E DGL AGLSNPFTAGRYH LVIEK+SF +ELEVTAWTEDGLIMAARH+KYKHL GV
Sbjct: 186 KGE-DGLFAGLSNPFTAGRYHSLVIEKESFPGEELEVTAWTEDGLIMAARHRKYKHLQGV 244
Query: 189 QFHPESILTSEGKT 202
QFHPESI+TSEGKT
Sbjct: 245 QFHPESIITSEGKT 258
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573238|ref|XP_002527548.1| Anthranilate synthase component II, putative [Ricinus communis] gi|223533098|gb|EEF34857.1| Anthranilate synthase component II, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 161/198 (81%), Gaps = 10/198 (5%)
Query: 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVV 67
S+ KNPI+VIDNYDSFTYNLCQYMGEL G +FEVYRNDELTV ELKRK PRGV+
Sbjct: 73 SREMKNPIIVIDNYDSFTYNLCQYMGEL------GCYFEVYRNDELTVEELKRKNPRGVL 126
Query: 68 ISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKAL-V 124
ISPGPG P++SGIS TVLELGP +PLF CMGL+CIGEA G++ GK+ V
Sbjct: 127 ISPGPGEPRDSGISLETVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPYGVMHGKSSPV 186
Query: 125 YYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKH 184
YY+EK E DGL +GLSNPFTAGRYH LVIE DSF ++ELE+TAWTEDGLIMAARHKKYKH
Sbjct: 187 YYDEKGE-DGLFSGLSNPFTAGRYHSLVIENDSFPTEELEITAWTEDGLIMAARHKKYKH 245
Query: 185 LHGVQFHPESILTSEGKT 202
L GVQFHPESI+TSEGKT
Sbjct: 246 LQGVQFHPESIITSEGKT 263
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072976|gb|ACJ84848.1| unknown [Medicago truncatula] gi|388498572|gb|AFK37352.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/205 (70%), Positives = 162/205 (79%), Gaps = 12/205 (5%)
Query: 1 GNEVLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR 60
G V K ND PIVVIDNYDSFTYNLCQY+GEL G HFEVYRNDELTV ELKR
Sbjct: 58 GVSVEKSKSND--PIVVIDNYDSFTYNLCQYIGEL------GVHFEVYRNDELTVEELKR 109
Query: 61 KKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSC 118
K PRGV+ISPGPG PQ+SGIS +TV ELGPT+P+F CMGL+C+GEA G++
Sbjct: 110 KNPRGVLISPGPGTPQDSGISLQTVFELGPTIPVFGVCMGLQCMGEAFGGKIIRAPSGVM 169
Query: 119 MGKA-LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAA 177
GK+ LVYY+EK E DGLLAGL NPF AGRYH LVIEK+SF DELEVTAWTEDGLIMAA
Sbjct: 170 HGKSSLVYYDEKGE-DGLLAGLPNPFLAGRYHSLVIEKESFPDDELEVTAWTEDGLIMAA 228
Query: 178 RHKKYKHLHGVQFHPESILTSEGKT 202
RHKKY+H+ GVQFHPESI+T +GKT
Sbjct: 229 RHKKYRHMQGVQFHPESIITPDGKT 253
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449078|ref|XP_004142292.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus] gi|449513110|ref|XP_004164233.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 140/197 (71%), Positives = 164/197 (83%), Gaps = 10/197 (5%)
Query: 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGV 66
L+K +NPI+VIDNYDSFTYNLCQY+GEL G HFEVYRND+LTV EL+RK PRG+
Sbjct: 65 LNKKTQNPIIVIDNYDSFTYNLCQYVGEL------GCHFEVYRNDDLTVDELRRKNPRGI 118
Query: 67 VISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKAL- 123
+ISPGPGAPQ+SGIS +TVLELGPT+PLF CMGL+CIGEA G++ GK+
Sbjct: 119 LISPGPGAPQDSGISLQTVLELGPTIPLFGVCMGLQCIGEAFGGKIVRSPYGVVHGKSSP 178
Query: 124 VYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK 183
VYY+EK E +GLL+GLSNPFTAGRYH LVI+K++F SDELEVTAWTEDGLIMAARH KY+
Sbjct: 179 VYYDEKGE-EGLLSGLSNPFTAGRYHSLVIDKETFPSDELEVTAWTEDGLIMAARHSKYR 237
Query: 184 HLHGVQFHPESILTSEG 200
HL GVQFHPESI+T+EG
Sbjct: 238 HLQGVQFHPESIITNEG 254
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845630|ref|XP_002890696.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata] gi|297336538|gb|EFH66955.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 140/197 (71%), Positives = 159/197 (80%), Gaps = 10/197 (5%)
Query: 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68
+N PI+VIDNYDSFTYNLCQYMGEL G HFEVYRNDELTV ELK K PRGV+I
Sbjct: 70 QNGYGPIIVIDNYDSFTYNLCQYMGEL------GCHFEVYRNDELTVEELKNKNPRGVLI 123
Query: 69 SPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKA-LVY 125
SPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++ GK+ +VY
Sbjct: 124 SPGPGTPQDSGISLQTVLELGPRVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVY 183
Query: 126 YNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHL 185
Y+EK E +GL +GLSNPF GRYH LVIEKDSF SDELEVTAWTEDGL+MAARH+KYKH+
Sbjct: 184 YDEKGE-EGLFSGLSNPFLVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHI 242
Query: 186 HGVQFHPESILTSEGKT 202
GVQFHPESI+T+EGKT
Sbjct: 243 QGVQFHPESIITTEGKT 259
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|25403004|pir||B86381 probable anthranilate synthase beta subunit [imported] - Arabidopsis thaliana | Back alignment and taxonomy information |
|---|
Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 138/198 (69%), Positives = 159/198 (80%), Gaps = 10/198 (5%)
Query: 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVV 67
S PI+VIDNYDSFTYNLCQYMGEL+ HFEVYRNDELTV ELKRK PRGV+
Sbjct: 261 SSKQNGPIIVIDNYDSFTYNLCQYMGELQC------HFEVYRNDELTVEELKRKNPRGVL 314
Query: 68 ISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKA-LV 124
ISPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++ GK+ +V
Sbjct: 315 ISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMV 374
Query: 125 YYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKH 184
+Y+EK E +GL +GLSNPF GRYH LVIEKD+F SDELEVTAWTEDGL+MAARH+KYKH
Sbjct: 375 HYDEKGE-EGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAARHRKYKH 433
Query: 185 LHGVQFHPESILTSEGKT 202
+ GVQFHPESI+T+EGKT
Sbjct: 434 IQGVQFHPESIITTEGKT 451
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: N/A Phylum: Streptophyta Superkingdom: |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 203 | ||||||
| TAIR|locus:2174378 | 273 | AT5G57890 [Arabidopsis thalian | 0.955 | 0.710 | 0.691 | 3.7e-71 | |
| TAIR|locus:2826092 | 222 | AT1G24909 [Arabidopsis thalian | 0.940 | 0.860 | 0.693 | 8.9e-70 | |
| TAIR|locus:2826077 | 222 | AT1G25083 [Arabidopsis thalian | 0.940 | 0.860 | 0.693 | 8.9e-70 | |
| TAIR|locus:2825965 | 222 | AT1G25155 [Arabidopsis thalian | 0.940 | 0.860 | 0.693 | 8.9e-70 | |
| TAIR|locus:2826037 | 235 | AT1G24807 [Arabidopsis thalian | 0.970 | 0.838 | 0.665 | 5.1e-67 | |
| TIGR_CMR|CHY_1586 | 189 | CHY_1586 "para-aminobenzoate/a | 0.862 | 0.925 | 0.439 | 3.1e-35 | |
| UNIPROTKB|Q5LRH9 | 193 | trpG "Anthranilate synthase co | 0.857 | 0.901 | 0.460 | 1.5e-33 | |
| TIGR_CMR|SPO_2149 | 193 | SPO_2149 "anthranilate synthas | 0.857 | 0.901 | 0.460 | 1.5e-33 | |
| TIGR_CMR|BA_0069 | 195 | BA_0069 "para-aminobenzoate sy | 0.857 | 0.892 | 0.431 | 2.5e-33 | |
| UNIPROTKB|Q4K501 | 197 | trpG "Anthranilate synthase, c | 0.857 | 0.883 | 0.435 | 6.7e-33 |
| TAIR|locus:2174378 AT5G57890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 141/204 (69%), Positives = 163/204 (79%)
Query: 2 NEVLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK 61
N + + N PI+VIDNYDSFTYNLCQYMGEL G HFEVYRNDELTV ELKRK
Sbjct: 59 NSISSVVVNSSGPIIVIDNYDSFTYNLCQYMGEL------GCHFEVYRNDELTVEELKRK 112
Query: 62 KPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM 119
KPRG++ISPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++
Sbjct: 113 KPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMH 172
Query: 120 GKA-LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAAR 178
GK+ +V+Y+EK E +GL +GLSNPF GRYH LVIEKDSF SDELEVTAWTEDGL+MAAR
Sbjct: 173 GKSSMVHYDEKGE-EGLFSGLSNPFLVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAAR 231
Query: 179 HKKYKHLHGVQFHPESILTSEGKT 202
H+KYKH+ GVQFHPESI+T+EGKT
Sbjct: 232 HRKYKHIQGVQFHPESIITTEGKT 255
|
|
| TAIR|locus:2826092 AT1G24909 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 140/202 (69%), Positives = 163/202 (80%)
Query: 4 VLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKP 63
V+ SK + PI+VIDNYDSFTYNLCQYMGEL+ HFEVYRNDELTV ELKRK P
Sbjct: 11 VINSSKQN-GPIIVIDNYDSFTYNLCQYMGELQC------HFEVYRNDELTVEELKRKNP 63
Query: 64 RGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK 121
RGV+ISPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++ GK
Sbjct: 64 RGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGK 123
Query: 122 A-LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHK 180
+ +V+Y+EK E +GL +GLSNPF GRYH LVIEKD+F SDELEVTAWTEDGL+MAARH+
Sbjct: 124 SSMVHYDEKGE-EGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAARHR 182
Query: 181 KYKHLHGVQFHPESILTSEGKT 202
KYKH+ GVQFHPESI+T+EGKT
Sbjct: 183 KYKHIQGVQFHPESIITTEGKT 204
|
|
| TAIR|locus:2826077 AT1G25083 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 140/202 (69%), Positives = 163/202 (80%)
Query: 4 VLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKP 63
V+ SK + PI+VIDNYDSFTYNLCQYMGEL+ HFEVYRNDELTV ELKRK P
Sbjct: 11 VINSSKQN-GPIIVIDNYDSFTYNLCQYMGELQC------HFEVYRNDELTVEELKRKNP 63
Query: 64 RGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK 121
RGV+ISPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++ GK
Sbjct: 64 RGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGK 123
Query: 122 A-LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHK 180
+ +V+Y+EK E +GL +GLSNPF GRYH LVIEKD+F SDELEVTAWTEDGL+MAARH+
Sbjct: 124 SSMVHYDEKGE-EGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAARHR 182
Query: 181 KYKHLHGVQFHPESILTSEGKT 202
KYKH+ GVQFHPESI+T+EGKT
Sbjct: 183 KYKHIQGVQFHPESIITTEGKT 204
|
|
| TAIR|locus:2825965 AT1G25155 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 140/202 (69%), Positives = 163/202 (80%)
Query: 4 VLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKP 63
V+ SK + PI+VIDNYDSFTYNLCQYMGEL+ HFEVYRNDELTV ELKRK P
Sbjct: 11 VINSSKQN-GPIIVIDNYDSFTYNLCQYMGELQC------HFEVYRNDELTVEELKRKNP 63
Query: 64 RGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK 121
RGV+ISPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++ GK
Sbjct: 64 RGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGK 123
Query: 122 A-LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHK 180
+ +V+Y+EK E +GL +GLSNPF GRYH LVIEKD+F SDELEVTAWTEDGL+MAARH+
Sbjct: 124 SSMVHYDEKGE-EGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAARHR 182
Query: 181 KYKHLHGVQFHPESILTSEGKT 202
KYKH+ GVQFHPESI+T+EGKT
Sbjct: 183 KYKHIQGVQFHPESIITTEGKT 204
|
|
| TAIR|locus:2826037 AT1G24807 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 139/209 (66%), Positives = 161/209 (77%)
Query: 4 VLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELE-LELSQGY------HFEVYRNDELTVA 56
V+ SK + PI+VIDNYDSFTYNLCQY E L Y HFEVYRNDELTV
Sbjct: 11 VINSSKQN-GPIIVIDNYDSFTYNLCQYKQNFENCYLFLQYMGELQCHFEVYRNDELTVE 69
Query: 57 ELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLL 114
ELKRK PRGV+ISPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++
Sbjct: 70 ELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSP 129
Query: 115 LVSCMGKA-LVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGL 173
GK+ +V+Y+EK E +GL +GLSNPF GRYH LVIEKD+F SDELEVTAWTEDGL
Sbjct: 130 FGVMHGKSSMVHYDEKGE-EGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGL 188
Query: 174 IMAARHKKYKHLHGVQFHPESILTSEGKT 202
+MAARH+KYKH+ GVQFHPESI+T+EGKT
Sbjct: 189 VMAARHRKYKHIQGVQFHPESIITTEGKT 217
|
|
| TIGR_CMR|CHY_1586 CHY_1586 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 83/189 (43%), Positives = 117/189 (61%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL QY+GEL G+ V RND +T++E++ KP ++ISPGP
Sbjct: 2 ILLIDNYDSFTYNLVQYLGEL------GHRVVVRRNDRITLSEIREMKPTHIIISPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS V +P+ C+G + IG+A G++ + + GK + Y++ +
Sbjct: 56 PNEAGISLDVVRFFAGKIPILGVCLGHQVIGQAFGGKV-IQDKIPVHGKTSLIYHDGQ-- 112
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
G+ GL NPF A RYH LV+EK+ EL +TA T +G IM RH+ + + GVQFHP
Sbjct: 113 -GIYKGLPNPFRATRYHSLVVEKEGL-PQELIITATTAEGTIMGIRHRTWA-IEGVQFHP 169
Query: 193 ESILTSEGK 201
ESI+T GK
Sbjct: 170 ESIMTEYGK 178
|
|
| UNIPROTKB|Q5LRH9 trpG "Anthranilate synthase component II" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 87/189 (46%), Positives = 111/189 (58%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYNL Y+GEL E+ EV RND L V E P G+++SPGP
Sbjct: 2 LLLIDNYDSFTYNLVHYLGELGAEI------EVRRNDALNVQEAMAMNPAGILLSPGPCD 55
Query: 75 PQESGISFRTVLELGPTM-PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEE 131
P ++GI T PL C+G + IG+A G++ V GK ++
Sbjct: 56 PDQAGICLALTEAAAETRTPLLGVCLGHQTIGQAFGGKV-VRCHEIVHGKMGQMHHS--- 111
Query: 132 ADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFH 191
A GL AGL +PF A RYH LV+E+DS D LEVTAW EDG IM +HK+ +HGVQFH
Sbjct: 112 AKGLFAGLPSPFEATRYHSLVVERDSL-PDCLEVTAWLEDGTIMGLQHKELP-IHGVQFH 169
Query: 192 PESILTSEG 200
PESI + G
Sbjct: 170 PESIASEHG 178
|
|
| TIGR_CMR|SPO_2149 SPO_2149 "anthranilate synthase component II" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 87/189 (46%), Positives = 111/189 (58%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYNL Y+GEL E+ EV RND L V E P G+++SPGP
Sbjct: 2 LLLIDNYDSFTYNLVHYLGELGAEI------EVRRNDALNVQEAMAMNPAGILLSPGPCD 55
Query: 75 PQESGISFRTVLELGPTM-PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEE 131
P ++GI T PL C+G + IG+A G++ V GK ++
Sbjct: 56 PDQAGICLALTEAAAETRTPLLGVCLGHQTIGQAFGGKV-VRCHEIVHGKMGQMHHS--- 111
Query: 132 ADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFH 191
A GL AGL +PF A RYH LV+E+DS D LEVTAW EDG IM +HK+ +HGVQFH
Sbjct: 112 AKGLFAGLPSPFEATRYHSLVVERDSL-PDCLEVTAWLEDGTIMGLQHKELP-IHGVQFH 169
Query: 192 PESILTSEG 200
PESI + G
Sbjct: 170 PESIASEHG 178
|
|
| TIGR_CMR|BA_0069 BA_0069 "para-aminobenzoate synthase glutamine amidotransferase, component II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 82/190 (43%), Positives = 120/190 (63%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFT+NL Q++GEL EL V RNDE+T+++++ KP ++ISPGP +
Sbjct: 2 ILMIDNYDSFTFNLVQFLGELGQELV------VKRNDEVTISDIENMKPDFLMISPGPCS 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM-GKALVYYNEKEE 131
P E+GIS + +P+F C+G + I + G V+ M GK +++ +
Sbjct: 56 PNEAGISMDVIRYFAGKIPIFGVCLGHQSIAQVFGGE--VVRAERLMHGKTSPMHHDGKT 113
Query: 132 ADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFH 191
+ + + NPFTA RYH L+++K++ D LEVT+WTE+G IMA RH + GVQFH
Sbjct: 114 ---IFSDIPNPFTATRYHSLIVKKETL-PDCLEVTSWTEEGEIMALRHTTLP-IEGVQFH 168
Query: 192 PESILTSEGK 201
PESI+TS GK
Sbjct: 169 PESIMTSHGK 178
|
|
| UNIPROTKB|Q4K501 trpG "Anthranilate synthase, component II" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 84/193 (43%), Positives = 118/193 (61%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYN+ QY+GEL E+ +V RNDELTVA+++ KP +V+SPGP
Sbjct: 2 LLMIDNYDSFTYNVVQYLGELGAEV------KVVRNDELTVAQIEALKPERIVVSPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS + +P+ C+G + IG+A G++ V + V++ +
Sbjct: 56 PTEAGISIEAIKHFAGKLPILGVCLGHQSIGQAFGGQVVRARQVMHGKTSPVFHRDL--- 112
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT--EDGL---IMAARHKKYKHLHG 187
G+ GL+ P T RYH LV++ +S + LEVTAWT EDG IM RHK ++ G
Sbjct: 113 -GVFNGLNMPLTVTRYHSLVVKHESL-PECLEVTAWTQLEDGSVDEIMGLRHKTL-NIEG 169
Query: 188 VQFHPESILTSEG 200
VQFHPESILT +G
Sbjct: 170 VQFHPESILTEQG 182
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P00902 | TRPG_ACIAD | 4, ., 1, ., 3, ., 2, 7 | 0.4041 | 0.8571 | 0.8969 | yes | no |
| P00901 | TRPG_PSEPU | 4, ., 1, ., 3, ., 2, 7 | 0.4248 | 0.8571 | 0.8787 | yes | no |
| P28819 | PABA_BACSU | 4, ., 1, ., 3, ., 2, 7 | 0.4114 | 0.8472 | 0.8865 | yes | no |
| Q57690 | TRPG_METJA | 4, ., 1, ., 3, ., 2, 7 | 0.3684 | 0.8571 | 0.8832 | yes | no |
| Q9YGB2 | TRPG_PYRKO | 4, ., 1, ., 3, ., 2, 7 | 0.3850 | 0.8177 | 0.8645 | yes | no |
| Q02003 | TRPG_LACLA | 4, ., 1, ., 3, ., 2, 7 | 0.3210 | 0.8669 | 0.8888 | yes | no |
| P26923 | TRPG_METTM | 4, ., 1, ., 3, ., 2, 7 | 0.3582 | 0.8325 | 0.8622 | yes | no |
| P26922 | TRPG_AZOBR | 4, ., 1, ., 3, ., 2, 7 | 0.4285 | 0.8571 | 0.8877 | yes | no |
| P06193 | PABA_SALTY | 2, ., 6, ., 1, ., 8, 5 | 0.3776 | 0.8571 | 0.9304 | yes | no |
| O27693 | TRPG_METTH | 4, ., 1, ., 3, ., 2, 7 | 0.3834 | 0.8866 | 0.9183 | yes | no |
| P20576 | TRPG_PSEAE | 4, ., 1, ., 3, ., 2, 7 | 0.4248 | 0.8571 | 0.8656 | yes | no |
| P05379 | TRPG_THET8 | 4, ., 1, ., 3, ., 2, 7 | 0.4010 | 0.8522 | 0.8480 | yes | no |
| Q06129 | TRPG_SULSO | 4, ., 1, ., 3, ., 2, 7 | 0.3482 | 0.8078 | 0.8410 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 203 | |||
| PLN02335 | 222 | PLN02335, PLN02335, anthranilate synthase | 1e-110 | |
| PRK05670 | 189 | PRK05670, PRK05670, anthranilate synthase componen | 2e-73 | |
| cd01743 | 184 | cd01743, GATase1_Anthranilate_Synthase, Type 1 glu | 5e-68 | |
| COG0512 | 191 | COG0512, PabA, Anthranilate/para-aminobenzoate syn | 1e-65 | |
| CHL00101 | 190 | CHL00101, trpG, anthranilate synthase component 2 | 6e-65 | |
| PRK07765 | 214 | PRK07765, PRK07765, para-aminobenzoate synthase co | 1e-54 | |
| PRK14607 | 534 | PRK14607, PRK14607, bifunctional glutamine amidotr | 2e-54 | |
| PRK07649 | 195 | PRK07649, PRK07649, para-aminobenzoate/anthranilat | 4e-53 | |
| pfam00117 | 186 | pfam00117, GATase, Glutamine amidotransferase clas | 8e-49 | |
| TIGR00566 | 188 | TIGR00566, trpG_papA, glutamine amidotransferase o | 5e-46 | |
| PRK08007 | 187 | PRK08007, PRK08007, para-aminobenzoate synthase co | 6e-46 | |
| PRK06774 | 191 | PRK06774, PRK06774, para-aminobenzoate synthase co | 1e-43 | |
| PRK08857 | 193 | PRK08857, PRK08857, para-aminobenzoate synthase co | 2e-39 | |
| PRK13566 | 720 | PRK13566, PRK13566, anthranilate synthase; Provisi | 3e-34 | |
| TIGR01815 | 717 | TIGR01815, TrpE-clade3, anthranilate synthase, alp | 1e-24 | |
| PRK09522 | 531 | PRK09522, PRK09522, bifunctional glutamine amidotr | 1e-23 | |
| PRK06895 | 190 | PRK06895, PRK06895, putative anthranilate synthase | 1e-17 | |
| PRK05637 | 208 | PRK05637, PRK05637, anthranilate synthase componen | 4e-14 | |
| PLN02889 | 918 | PLN02889, PLN02889, oxo-acid-lyase/anthranilate sy | 1e-13 | |
| TIGR01823 | 742 | TIGR01823, PabB-fungal, aminodeoxychorismate synth | 2e-13 | |
| cd01742 | 181 | cd01742, GATase1_GMP_Synthase, Type 1 glutamine am | 1e-09 | |
| PRK00074 | 511 | PRK00074, guaA, GMP synthase; Reviewed | 3e-08 | |
| TIGR00888 | 188 | TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd | 5e-08 | |
| PRK12838 | 354 | PRK12838, PRK12838, carbamoyl phosphate synthase s | 7e-07 | |
| cd01744 | 178 | cd01744, GATase1_CPSase, Small chain of the glutam | 2e-06 | |
| cd01745 | 189 | cd01745, GATase1_2, Subgroup of proteins having th | 3e-06 | |
| COG2071 | 243 | COG2071, COG2071, Predicted glutamine amidotransfe | 4e-06 | |
| PRK00758 | 184 | PRK00758, PRK00758, GMP synthase subunit A; Valida | 9e-06 | |
| PLN02771 | 415 | PLN02771, PLN02771, carbamoyl-phosphate synthase ( | 1e-05 | |
| COG0518 | 198 | COG0518, GuaA, GMP synthase - Glutamine amidotrans | 2e-05 | |
| PRK12564 | 360 | PRK12564, PRK12564, carbamoyl phosphate synthase s | 2e-05 | |
| TIGR01368 | 358 | TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt | 7e-05 | |
| CHL00197 | 382 | CHL00197, carA, carbamoyl-phosphate synthase argin | 2e-04 | |
| pfam07722 | 219 | pfam07722, Peptidase_C26, Peptidase C26 | 8e-04 | |
| cd01741 | 188 | cd01741, GATase1_1, Subgroup of proteins having th | 0.002 |
| >gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = e-110
Identities = 142/202 (70%), Positives = 161/202 (79%), Gaps = 10/202 (4%)
Query: 4 VLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKP 63
V+ S PI+VIDNYDSFTYNLCQYMGEL G HFEVYRNDELTV ELKRK P
Sbjct: 10 VVINSSKQNGPIIVIDNYDSFTYNLCQYMGEL------GCHFEVYRNDELTVEELKRKNP 63
Query: 64 RGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK 121
RGV+ISPGPG PQ+SGIS +TVLELGP +PLF CMGL+CIGEA G++ GK
Sbjct: 64 RGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGK 123
Query: 122 -ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHK 180
+ V+Y+EK E +GL +GL NPFTAGRYH LVIEKD+F SDELEVTAWTEDGLIMAARH+
Sbjct: 124 SSPVHYDEKGE-EGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHR 182
Query: 181 KYKHLHGVQFHPESILTSEGKT 202
KYKH+ GVQFHPESI+T+EGKT
Sbjct: 183 KYKHIQGVQFHPESIITTEGKT 204
|
Length = 222 |
| >gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 2e-73
Identities = 92/192 (47%), Positives = 121/192 (63%), Gaps = 18/192 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL QY+GEL G VYRNDE+T+ E++ P +V+SPGPG
Sbjct: 2 ILLIDNYDSFTYNLVQYLGEL------GAEVVVYRNDEITLEEIEALNPDAIVLSPGPGT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM-GKA-LVYYNEKE 130
P E+GIS + E +P+ C+G + IGEA G+ V+ M GK + ++
Sbjct: 56 PAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGK--VVRAKEIMHGKTSPIEHDGS- 112
Query: 131 EADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQF 190
G+ AGL NPFT RYH LV++++S D LEVTAWT+DG IM RHK+ ++GVQF
Sbjct: 113 ---GIFAGLPNPFTVTRYHSLVVDRESL-PDCLEVTAWTDDGEIMGVRHKELP-IYGVQF 167
Query: 191 HPESILTSEGKT 202
HPESILT G
Sbjct: 168 HPESILTEHGHK 179
|
Length = 189 |
| >gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 5e-68
Identities = 88/191 (46%), Positives = 114/191 (59%), Gaps = 16/191 (8%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL QY+ EL G V RNDE+T+ EL+ P +VISPGPG
Sbjct: 1 ILLIDNYDSFTYNLVQYLREL------GAEVVVVRNDEITLEELELLNPDAIVISPGPGH 54
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKA-LVYYNEKEE 131
P+++GIS + L +P+ C+G + I EA G++ GK ++++
Sbjct: 55 PEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEP-MHGKTSEIHHDGS-- 111
Query: 132 ADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFH 191
GL GL PFT GRYH LV++ D D LEVTA TEDG+IMA RH+ +GVQFH
Sbjct: 112 --GLFKGLPQPFTVGRYHSLVVDPDPL-PDLLEVTASTEDGVIMALRHRDLPI-YGVQFH 167
Query: 192 PESILTSEGKT 202
PESILT G
Sbjct: 168 PESILTEYGLR 178
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184 |
| >gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 1e-65
Identities = 86/193 (44%), Positives = 118/193 (61%), Gaps = 19/193 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL QY+ EL G V RND++++ ++ KP +VISPGPG
Sbjct: 4 ILLIDNYDSFTYNLVQYLREL------GAEVTVVRNDDISLELIEALKPDAIVISPGPGT 57
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM-GKA-LVYYNEKE 130
P+++GIS + +P+ C+G + I EA G++ M GK ++ ++
Sbjct: 58 PKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAKEP--MHGKTSIITHDGS- 114
Query: 131 EADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQ 189
GL AGL NPFT RYH LV++ ++ +ELEVTA +EDG +IMA RHKK +GVQ
Sbjct: 115 ---GLFAGLPNPFTVTRYHSLVVDPETL-PEELEVTAESEDGGVIMAVRHKKLPI-YGVQ 169
Query: 190 FHPESILTSEGKT 202
FHPESILT G
Sbjct: 170 FHPESILTEYGHR 182
|
Length = 191 |
| >gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2 | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 6e-65
Identities = 89/190 (46%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYNL Q +GEL V RNDE+ ++++K R ++ISPGPG
Sbjct: 2 ILIIDNYDSFTYNLVQSLGEL------NSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGH 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM-GKALVYYNEKEE 131
P++SGIS + P +P+ C+G + IG G+ ++ M GK Y+
Sbjct: 56 PRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGK--IIKAPKPMHGKTSKIYHNH-- 111
Query: 132 ADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFH 191
D L GL NPFTA RYH L+I+ + LE+TAWTEDGLIMA RHKKYK L G+QFH
Sbjct: 112 -DDLFQGLPNPFTATRYHSLIIDPLNL-PSPLEITAWTEDGLIMACRHKKYKMLRGIQFH 169
Query: 192 PESILTSEGK 201
PES+LT+ G+
Sbjct: 170 PESLLTTHGQ 179
|
Length = 190 |
| >gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 1e-54
Identities = 84/195 (43%), Positives = 113/195 (57%), Gaps = 25/195 (12%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPR--GVVISPGP 72
I+V+DNYDSF +NL QY+G+L G EV+RND+ +A+ + GV++SPGP
Sbjct: 3 ILVVDNYDSFVFNLVQYLGQL------GVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGP 56
Query: 73 GAPQESGISFRTVLELGPT-MPLF--CMGLKCIGEALEG---RLYVLLLVSCMGK-ALVY 125
G P+ +G S V PL C+G + IG A R LL GK + V+
Sbjct: 57 GTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELL----HGKTSSVH 112
Query: 126 YNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHL 185
+ G+LAGL +PFTA RYH L I ++ ELEVTA T+ G+IMA RH++ +
Sbjct: 113 HTGV----GVLAGLPDPFTATRYHSLTILPETL-PAELEVTARTDSGVIMAVRHRELP-I 166
Query: 186 HGVQFHPESILTSEG 200
HGVQFHPES+LT G
Sbjct: 167 HGVQFHPESVLTEGG 181
|
Length = 214 |
| >gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-54
Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 15/191 (7%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFTYN+ QY+GEL E EV RNDE+T+ E++ P +VISPGPG
Sbjct: 2 IILIDNYDSFTYNIYQYIGELGPE-----EIEVVRNDEITIEEIEALNPSHIVISPGPGR 56
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKA-LVYYNEKEE 131
P+E+GIS + +P+ C+G + IG A G++ V GK + +N K
Sbjct: 57 PEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKI-VHAKRILHGKTSPIDHNGK-- 113
Query: 132 ADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFH 191
GL G+ NP A RYH LV+E+ S + LEVTA ++DG IM RHK++ + GVQFH
Sbjct: 114 --GLFRGIPNPTVATRYHSLVVEEASL-PECLEVTAKSDDGEIMGIRHKEH-PIFGVQFH 169
Query: 192 PESILTSEGKT 202
PESILT EGK
Sbjct: 170 PESILTEEGKR 180
|
Length = 534 |
| >gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 4e-53
Identities = 85/192 (44%), Positives = 124/192 (64%), Gaps = 18/192 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFT+NL Q++GEL EL V RNDE+T+++++ KP ++ISPGP +
Sbjct: 2 ILMIDNYDSFTFNLVQFLGELGQELV------VKRNDEVTISDIENMKPDFLMISPGPCS 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM-GK-ALVYYNEKE 130
P E+GIS + +P+F C+G + I + G V+ M GK +L++++ K
Sbjct: 56 PNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGE--VVRAERLMHGKTSLMHHDGK- 112
Query: 131 EADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQF 190
+ + + NPFTA RYH L+++K++ D LEVT+WTE+G IMA RHK + GVQF
Sbjct: 113 ---TIFSDIPNPFTATRYHSLIVKKETL-PDCLEVTSWTEEGEIMAIRHKTLP-IEGVQF 167
Query: 191 HPESILTSEGKT 202
HPESI+TS GK
Sbjct: 168 HPESIMTSHGKE 179
|
Length = 195 |
| >gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 8e-49
Identities = 72/189 (38%), Positives = 97/189 (51%), Gaps = 16/189 (8%)
Query: 16 VVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP 75
++IDN DSFTYNL + + EL +E+ EV ND E+ P G++ISPGPG+P
Sbjct: 1 LLIDNGDSFTYNLARALRELGVEV------EVVPNDT-PAEEILELNPDGIIISPGPGSP 53
Query: 76 QESGISFRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
G + + EL +P+ C+G + + A G++ GK
Sbjct: 54 GALGGAIEAIKELRENKIPILGICLGHQLLALAFGGKVIKAKKEPHHGKNS----PVGHD 109
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
GL GL N F RYH ++ D D LEVTA +E+G IMA RHK+ + GVQFHP
Sbjct: 110 KGLFYGLPNVFIVRRYHSYAVDPD-TLPDGLEVTAASENGGIMAIRHKENP-IFGVQFHP 167
Query: 193 ESILTSEGK 201
ES LT G
Sbjct: 168 ESSLTPGGP 176
|
Length = 186 |
| >gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-46
Identities = 79/190 (41%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYNL QY EL E+ V RND LT+ E++ P +VISPGP
Sbjct: 2 VLMIDNYDSFTYNLVQYFCELGAEVV------VKRNDSLTLQEIEALLPLLIVISPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS + +P+ C+G + +G+A G V GK +
Sbjct: 56 PNEAGISLEAIRHFAGKLPILGVCLGHQAMGQA-FGGDVVRANTVMHGKT---SEIEHNG 111
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT-EDGLIMAARHKKYKHLHGVQFH 191
G+ GL NP TA RYH LV+E ++ VTAW E+ IMA RH+ L GVQFH
Sbjct: 112 AGIFRGLFNPLTATRYHSLVVEPETL-PTCFPVTAWEEENIEIMAIRHRD-LPLEGVQFH 169
Query: 192 PESILTSEGK 201
PESIL+ +G
Sbjct: 170 PESILSEQGH 179
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188 |
| >gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 6e-46
Identities = 79/188 (42%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I++IDNYDSFT+NL QY EL G V RND LT+A++ KP+ +VISPGP
Sbjct: 2 ILLIDNYDSFTWNLYQYFCEL------GADVLVKRNDALTLADIDALKPQKIVISPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS + +P+ C+G + + +A G++ V + + +N
Sbjct: 56 PDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHN----G 111
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
+G+ GL+NP T RYH LV+E DS EVTAW+E IM RH+++ L GVQFHP
Sbjct: 112 EGVFRGLANPLTVTRYHSLVVEPDSL-PACFEVTAWSETREIMGIRHRQWD-LEGVQFHP 169
Query: 193 ESILTSEG 200
ESIL+ +G
Sbjct: 170 ESILSEQG 177
|
Length = 187 |
| >gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-43
Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 18/192 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYNL QY EL G V RNDEL + ++++ P +VISPGP
Sbjct: 2 LLLIDNYDSFTYNLYQYFCEL------GTEVMVKRNDELQLTDIEQLAPSHLVISPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS + +P+ C+G + +G+A R+ V + + ++ +
Sbjct: 56 PNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQ--- 112
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE-DGL---IMAARHKKYKHLHGV 188
G+ GL+ P T RYH LVI DS E+TAW+E G IM RH+ L GV
Sbjct: 113 -GVFRGLNQPLTVTRYHSLVIAADSL-PGCFELTAWSERGGEMDEIMGIRHRTLP-LEGV 169
Query: 189 QFHPESILTSEG 200
QFHPESIL+ +G
Sbjct: 170 QFHPESILSEQG 181
|
Length = 191 |
| >gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 2e-39
Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 19/193 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++IDNYDSFTYNL QY EL G +V RNDE+ + ++ P +VISPGP
Sbjct: 2 LLMIDNYDSFTYNLYQYFCEL------GAQVKVVRNDEIDIDGIEALNPTHLVISPGPCT 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P E+GIS + + +P+ C+G + I + G++ V + + + +
Sbjct: 56 PNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRHTGR--- 112
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE--DGL---IMAARHKKYKHLHG 187
+ GL+NP T RYH LV++ D+ + E+TAWTE DG IM +HK +
Sbjct: 113 -SVFKGLNNPLTVTRYHSLVVKNDTL-PECFELTAWTELEDGSMDEIMGFQHKTLP-IEA 169
Query: 188 VQFHPESILTSEG 200
VQFHPESI T +G
Sbjct: 170 VQFHPESIKTEQG 182
|
Length = 193 |
| >gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-34
Identities = 70/192 (36%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAE--LKRKKPRGVVISPGP 72
++++D+ DSF + L Y + E++ R AE L R P VV+SPGP
Sbjct: 529 VLLVDHEDSFVHTLANYFRQTGAEVT------TVRYG---FAEEMLDRVNPDLVVLSPGP 579
Query: 73 GAPQESGIS--FRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNE 128
G P + L +P+F C+GL+ I EA G L L GK
Sbjct: 580 GRPSDFDCKATIDAALARN--LPIFGVCLGLQAIVEAFGGELGQLA-YPMHGKPSRIRVR 636
Query: 129 KEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGV 188
L +GL FT GRYH L + ++ DEL VTA TEDG+IMA HK + V
Sbjct: 637 --GPGRLFSGLPEEFTVGRYHSLFADPETL-PDELLVTAETEDGVIMAIEHKTLP-VAAV 692
Query: 189 QFHPESILTSEG 200
QFHPESI+T G
Sbjct: 693 QFHPESIMTLGG 704
|
Length = 720 |
| >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 1e-24
Identities = 69/190 (36%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAE--LKRKKPRGVVISPGP 72
I+++D+ DSF + L Y+ + ++ H + AE ++P VV+SPGP
Sbjct: 519 ILLVDHEDSFVHTLANYLRQTGASVTTLRH---------SHAEAAFDERRPDLVVLSPGP 569
Query: 73 GAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE 130
G P + ++ L +P+F C+GL+ + EA G L VL GKA
Sbjct: 570 GRPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP-EPVHGKASRIR--VL 626
Query: 131 EADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQF 190
D L AGL T GRYH L +D + EL VTA + DGLIMA H++ L VQF
Sbjct: 627 GPDALFAGLPERLTVGRYHSLFARRDRLPA-ELTVTAESADGLIMAIEHRRLP-LAAVQF 684
Query: 191 HPESILTSEG 200
HPESI+T +G
Sbjct: 685 HPESIMTLDG 694
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717 |
| >gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 1e-23
Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKRKKPRGVVISPG 71
I+++DN DSFTYNL + S G++ +YRN + + L +++SPG
Sbjct: 4 ILLLDNIDSFTYNLADQL------RSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPG 57
Query: 72 PGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK 129
PG P E+G + L +P+ C+G + I EA G V G+ L
Sbjct: 58 PGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGY------VGQAGEILHGKASS 111
Query: 130 EEADG--LLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHG 187
E DG + AGL+NP RYH LV S L + A +G++MA RH + + G
Sbjct: 112 IEHDGQAMFAGLTNPLPVARYHSLV---GSNIPAGLTINA-HFNGMVMAVRHDADR-VCG 166
Query: 188 VQFHPESILTSEG 200
QFHPESILT++G
Sbjct: 167 FQFHPESILTTQG 179
|
Length = 531 |
| >gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-17
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++I+N+DSFT+NL + +L + +V ++L + E++ ++ISPGP
Sbjct: 4 LLIINNHDSFTFNLVDLIRKLGVP------MQVVNVEDLDLDEVENFS--HILISPGPDV 55
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P+ F + + C+G + + E G LY L V G+
Sbjct: 56 PRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLNNVR-HGQQRPLKVRSNSP 114
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHL--HGVQF 190
L GL F G YH + +++F LE+TA ++ ++MA +HK L +GVQF
Sbjct: 115 --LFDGLPEEFNIGLYHSWAVSEENF-PTPLEITAVCDENVVMAMQHK---TLPIYGVQF 168
Query: 191 HPESILTSEGK 201
HPES ++ G+
Sbjct: 169 HPESYISEFGE 179
|
Length = 190 |
| >gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-14
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+V+IDN+DSF YNL ++ GY V+RN + V E+ P + +SPGPG
Sbjct: 4 VVLIDNHDSFVYNL------VDAFAVAGYKCTVFRN-TVPVEEILAANPDLICLSPGPGH 56
Query: 75 PQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
P+++G + +PL C+G + + E G++ V ++ + ++
Sbjct: 57 PRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCGPVHGTTDNMILTDAGVQS 116
Query: 133 DGLLAGLS------NPFTAG------RYH--GLVIEKDSFRSDELEVTAWTEDG-LIMAA 177
+ AGL+ +P G RYH G V+ D S T +E G +IMAA
Sbjct: 117 P-VFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMES---LGTCSSEIGPVIMAA 172
Query: 178 RHKKYKHLHGVQFHPESILTSEG 200
K + G+QFHPES+L+ G
Sbjct: 173 ETTDGKAI-GLQFHPESVLSPTG 194
|
Length = 208 |
| >gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-13
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 39/175 (22%)
Query: 16 VVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL-----KRKKPRGVVISP 70
++IDNYDS+TYN+ Q EL + G V RNDE T E+ + K +VISP
Sbjct: 85 LLIDNYDSYTYNIYQ-----ELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISP 139
Query: 71 GPGAP---QESGISFRTVLELGPTMPLF--CMGLKCIG-----------EALEGRLYVLL 114
GPG+P + GI R +LE +P+ C+G + +G E + GRL
Sbjct: 140 GPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGARIVHAPEPVHGRL---- 194
Query: 115 LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169
+ + +N D + +G ++ F RYH LVI+ +S EL AWT
Sbjct: 195 -------SEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESL-PKELVPIAWT 241
|
Length = 918 |
| >gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-13
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 43/210 (20%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPR--GVVISPGP 72
++ ID+YDSFTYN+ + LE + H +D +L P +V+ PGP
Sbjct: 8 VLFIDSYDSFTYNVVRL---LEQQTDISVHVTTVHSDTFQ-DQLLELLPLFDAIVVGPGP 63
Query: 73 GAP---QESGISFRTVLEL--GPTMPLF--CMGLKC--------IGE---ALEGRLYVLL 114
G P Q+ GI + EL +P+ C+G + I G++Y
Sbjct: 64 GNPNNAQDMGI-ISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYE-- 120
Query: 115 LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLI 174
++ N+ GL + + RYH L + + E+G+I
Sbjct: 121 ---------MHTNDAAIFCGLFS-----VKSTRYHSLYANPEGIDTLLPLCLTEDEEGII 166
Query: 175 -MAARHKKYKHLHGVQFHPESILTSEGKTK 203
M+A+ KK GVQ+HPES + G K
Sbjct: 167 LMSAQTKKKPWF-GVQYHPESCCSELGSGK 195
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742 |
| >gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-09
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 55/208 (26%)
Query: 15 IVVIDNYDSFTYNLCQYMGELEL----ELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70
I+++D QY L EL G + E+ N + E+K K P+G+++S
Sbjct: 1 ILILDFG-------SQY-THLIARRVREL--GVYSEILPNTT-PLEEIKLKNPKGIILSG 49
Query: 71 GP------GAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEG-------RLYVLLL 115
GP AP+ + ELG +P+ C G++ I +AL G R Y
Sbjct: 50 GPSSVYEEDAPRVD----PEIFELG--VPVLGICYGMQLIAKALGGKVERGDKREY---- 99
Query: 116 VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEK--DSFRSDELEVTAWTEDGL 173
GKA + E +++ L GL + T HG + K + F +V A +++
Sbjct: 100 ----GKAEI---EIDDSSPLFEGLPDEQTVWMSHGDEVVKLPEGF-----KVIASSDNCP 147
Query: 174 IMAARHKKYKHLHGVQFHPESILTSEGK 201
+ A +++ K ++GVQFHPE T +GK
Sbjct: 148 VAAIANEEKK-IYGVQFHPEVTHTEKGK 174
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181 |
| >gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-08
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
E+ D + E++ P+G+++S GP GAP+ + ELG +P+ C
Sbjct: 31 EIVPYDI-SAEEIRAFNPKGIILSGGPASVYEEGAPRAD----PEIFELG--VPVLGICY 83
Query: 98 GLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150
G++ + L G R Y G+A + E + L GL HG
Sbjct: 84 GMQLMAHQLGGKVERAGKREY--------GRAEL---EVDNDSPLFKGLPEEQDVWMSHG 132
Query: 151 LVIEK--DSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201
+ + + F +V A TE+ I A +++ + +GVQFHPE T +GK
Sbjct: 133 DKVTELPEGF-----KVIASTENCPIAAIANEE-RKFYGVQFHPEVTHTPQGK 179
|
Length = 511 |
| >gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 35/199 (17%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I+V+D +T + + + EL G + E+ N + E++ K P+G+++S GP +
Sbjct: 1 ILVLDFGSQYTQLIARRLREL------GVYSELVPNTT-PLEEIREKNPKGIILSGGPSS 53
Query: 75 PQESGISFR---TVLELGPTMPLFCMGLKCIGEALEGRL-------YVLLLVSCMGKALV 124
+ R + ELG + C G++ + + L G + Y GKA +
Sbjct: 54 VYAEN-APRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREY--------GKAEL 104
Query: 125 YYNEKEEADGLLAGLSNPFTAGRYHG-LVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK 183
E + D L GL + T HG V E + +V A +++ + A H++ K
Sbjct: 105 ---EILDEDDLFRGLPDESTVWMSHGDKVKEL----PEGFKVLATSDNCPVAAMAHEE-K 156
Query: 184 HLHGVQFHPESILTSEGKT 202
++GVQFHPE T G
Sbjct: 157 PIYGVQFHPEVTHTEYGNE 175
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188 |
| >gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-07
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 26/149 (17%)
Query: 54 TVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLY 111
++ E+K P G+V+S GPG P+E + +L + P+ C+G + I AL
Sbjct: 200 SLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTE 259
Query: 112 VLLLVSCMGKALVYYNE------KEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEV 165
L + + + G + + + HG V+++DS L V
Sbjct: 260 ----------KLPFGHRGANHPVIDLTTGRV------WMTSQNHGYVVDEDSLDGTPLSV 303
Query: 166 TAWT-EDGLIMAARHKKYKHLHGVQFHPE 193
+ DG I RHKK L VQFHPE
Sbjct: 304 RFFNVNDGSIEGLRHKKKPVL-SVQFHPE 331
|
Length = 354 |
| >gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 34/154 (22%)
Query: 54 TVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTMPLF--CMGLKCIGEALEGRL 110
E+ + P G+ +S GPG P + +TV + LG +P+F C+G + + AL +
Sbjct: 31 DAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKT 90
Query: 111 YVLLLVSCMGKALVYYNEKEEADGLLAGLSNP---FTAGR-Y-----HGLVIEKDSFRSD 161
Y + + + G ++P GR Y HG ++ DS
Sbjct: 91 Y----------KMKFGHR---------GSNHPVKDLITGRVYITSQNHGYAVDPDSLPGG 131
Query: 162 ELEVTAWT-EDGLIMAARHKKYKHLHGVQFHPES 194
LEVT DG + RHK VQFHPE+
Sbjct: 132 -LEVTHVNLNDGTVEGIRHKDLPVF-SVQFHPEA 163
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178 |
| >gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193
D L V A DG+I A + GVQ+HPE
Sbjct: 140 DGLRVEARAPDGVIEAIESPDRPFVLGVQWHPE 172
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 189 |
| >gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-06
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 148 YHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193
+H I+K + L V A DG + A K + GVQ+HPE
Sbjct: 176 FHHQAIKK---LAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPE 218
|
Length = 243 |
| >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 9e-06
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 47/202 (23%)
Query: 14 PIVVIDNYDSFTY----NLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69
IVV+DN + + L +Y+G ++ ++ + V E+K G+++S
Sbjct: 1 KIVVVDNGGQYNHLIHRTL-RYLG-VDAKI---------IPNTTPVEEIK-AFEDGLILS 48
Query: 70 PGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRL-------YVLLLVSCMG 120
GP + +G + EL +P+ C+G + I +A G + Y L+ V
Sbjct: 49 GGPDI-ERAGNCPEYLKELD--VPILGICLGHQLIAKAFGGEVGRGEYGEYALVEV---- 101
Query: 121 KALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS--DELEVTAWTEDGLIMAAR 178
E + D +L GL H D + D E+ A ++ + A +
Sbjct: 102 -------EILDEDDILKGLPPEIRVWASH-----ADEVKELPDGFEILARSDICEVEAMK 149
Query: 179 HKKYKHLHGVQFHPESILTSEG 200
HK+ K ++GVQFHPE T G
Sbjct: 150 HKE-KPIYGVQFHPEVAHTEYG 170
|
Length = 184 |
| >gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 56 AELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLY 111
+E + KP GV+ S GPG P + TV EL +P+F CMG + +G+AL G+ +
Sbjct: 275 SEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTF 332
|
Length = 415 |
| >gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 51/203 (25%), Positives = 72/203 (35%), Gaps = 52/203 (25%)
Query: 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG 73
I+++D Y + EL GY + EL P G++IS GP
Sbjct: 3 KILILDFG--GQYL--GLIARRLREL--GYVYSEIVPYTGDAEELPLDSPDGIIISGGPM 56
Query: 74 APQESGISFRTVLEL-----GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYY 126
+ + +L P P+ C+G + + +AL G+ V
Sbjct: 57 SVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGK--------------VER 102
Query: 127 NEKEE-----------ADGLLAGLSNPF-TAGRYHGLVIEKDSFRSDEL----EVTAWTE 170
K E D L AGL + F T HG D+ EL V A +E
Sbjct: 103 GPKREIGWTPVELTEGDDPLFAGLPDLFTTVFMSHG-----DTV--VELPEGAVVLASSE 155
Query: 171 DGLIMAARHKKYKHLHGVQFHPE 193
A R+ K +GVQFHPE
Sbjct: 156 TCPNQAFRYGK--RAYGVQFHPE 176
|
Length = 198 |
| >gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-05
Identities = 45/162 (27%), Positives = 62/162 (38%), Gaps = 50/162 (30%)
Query: 54 TVAELKRKKPRGVVISPGPGAPQ--ESGIS-FRTVLELGPTMPLF--CMGLKCIGEALEG 108
T E+ P GV +S GPG P + I R +LE +P+F C+G + + AL
Sbjct: 210 TAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKK--IPIFGICLGHQLLALALGA 267
Query: 109 RLY------------VLLLVSCMGKALVYY---NEKEEADGLLAGLSNPFTAGRYHGLVI 153
+ Y V L + GK V N HG +
Sbjct: 268 KTYKMKFGHRGANHPVKDLET--GK--VEITSQN---------------------HGFAV 302
Query: 154 EKDSFRSDELEVTAW-TEDGLIMAARHKKYKHLHGVQFHPES 194
++DS LEVT DG + RHK VQ+HPE+
Sbjct: 303 DEDSL-PANLEVTHVNLNDGTVEGLRHKDLP-AFSVQYHPEA 342
|
Length = 360 |
| >gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 36/153 (23%)
Query: 56 AELKRKKPRGVVISPGPGAPQ--ESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLY 111
E+K+ P G+ +S GPG P + I T+ +L +P+F C+G + + A + Y
Sbjct: 208 EEIKKYNPDGIFLSNGPGDPAAVKPAI--ETIRKLLEKIPIFGICLGHQLLALAFGAKTY 265
Query: 112 VLLLVSCMGKALVYYNEKEEADGLLAGLSNP---FTAGRY------HGLVIEKDSFRSDE 162
+ G G ++P GR HG ++ DS + +
Sbjct: 266 KMK----FGH---------------RGGNHPVKDLITGRVEITSQNHGYAVDPDSLPAGD 306
Query: 163 LEVTAWT-EDGLIMAARHKKYKHLHGVQFHPES 194
LEVT DG + RHK + VQ+HPE+
Sbjct: 307 LEVTHVNLNDGTVEGIRHKDLP-VFSVQYHPEA 338
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358 |
| >gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 62 KPRGVVISPGPGAPQESGISFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSC 118
+P G+++S GPG P +TV + L +P+F CMG + + ALE + + L
Sbjct: 233 QPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFGHR 292
Query: 119 MGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT-EDGLIMAA 177
N++ E + HG + +S ++ +T + DG +
Sbjct: 293 GLNHPSGLNQQVE------------ITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGI 340
Query: 178 RHKKYKHLHGVQFHPES 194
H K VQ+HPE+
Sbjct: 341 SHSP-KPYFSVQYHPEA 356
|
Length = 382 |
| >gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26 | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 160 SDELEVTAWTEDGLIMAARHKK-YKHLHGVQFHPE 193
+ L V A DG I A + GVQ+HPE
Sbjct: 185 APGLRVEATAPDGTIEAIESPNAPYFVLGVQWHPE 219
|
These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219 |
| >gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 25/143 (17%)
Query: 65 GVVISPGPGAPQESGISF--------RTVLELGPTMPLF--CMGLKCIGEALEGRLYVLL 114
G+VI GP + E + R L G P+ C+G + + AL G++
Sbjct: 49 GLVILGGPMSVDEDDYPWLKKLKELIRQALAAG--KPVLGICLGHQLLARALGGKVGRNP 106
Query: 115 LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDEL----EVTAWTE 170
+G V E +AD L AGL + F +HG D+ EL + A +E
Sbjct: 107 KGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHG-----DTV--VELPPGAVLLASSE 159
Query: 171 DGLIMAARHKKYKHLHGVQFHPE 193
A R+ G+QFHPE
Sbjct: 160 ACPNQAFRYGD--RALGLQFHPE 180
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 203 | |||
| COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases com | 100.0 | |
| PRK08007 | 187 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK07649 | 195 | para-aminobenzoate/anthranilate synthase glutamine | 100.0 | |
| PLN02335 | 222 | anthranilate synthase | 100.0 | |
| TIGR00566 | 188 | trpG_papA glutamine amidotransferase of anthranila | 100.0 | |
| PRK06774 | 191 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| CHL00101 | 190 | trpG anthranilate synthase component 2 | 100.0 | |
| PRK05637 | 208 | anthranilate synthase component II; Provisional | 100.0 | |
| PRK05670 | 189 | anthranilate synthase component II; Provisional | 100.0 | |
| KOG0026 | 223 | consensus Anthranilate synthase, beta chain [Amino | 100.0 | |
| PRK08857 | 193 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK06895 | 190 | putative anthranilate synthase component II; Provi | 100.0 | |
| TIGR00888 | 188 | guaA_Nterm GMP synthase (glutamine-hydrolyzing), N | 100.0 | |
| cd01743 | 184 | GATase1_Anthranilate_Synthase Type 1 glutamine ami | 100.0 | |
| PRK07765 | 214 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK09522 | 531 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| cd01742 | 181 | GATase1_GMP_Synthase Type 1 glutamine amidotransfe | 100.0 | |
| PRK00758 | 184 | GMP synthase subunit A; Validated | 100.0 | |
| COG0518 | 198 | GuaA GMP synthase - Glutamine amidotransferase dom | 100.0 | |
| PRK14607 | 534 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| PLN02347 | 536 | GMP synthetase | 100.0 | |
| PF00117 | 192 | GATase: Glutamine amidotransferase class-I; InterP | 100.0 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 100.0 | |
| PLN02889 | 918 | oxo-acid-lyase/anthranilate synthase | 100.0 | |
| TIGR01815 | 717 | TrpE-clade3 anthranilate synthase, alpha proteobac | 100.0 | |
| PRK13566 | 720 | anthranilate synthase; Provisional | 100.0 | |
| cd01744 | 178 | GATase1_CPSase Small chain of the glutamine-depend | 100.0 | |
| PRK09065 | 237 | glutamine amidotransferase; Provisional | 100.0 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 100.0 | |
| PRK07053 | 234 | glutamine amidotransferase; Provisional | 99.98 | |
| PRK12564 | 360 | carbamoyl phosphate synthase small subunit; Review | 99.98 | |
| TIGR01368 | 358 | CPSaseIIsmall carbamoyl-phosphate synthase, small | 99.98 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 99.98 | |
| PRK07567 | 242 | glutamine amidotransferase; Provisional | 99.97 | |
| CHL00197 | 382 | carA carbamoyl-phosphate synthase arginine-specifi | 99.97 | |
| PRK05665 | 240 | amidotransferase; Provisional | 99.97 | |
| PRK12838 | 354 | carbamoyl phosphate synthase small subunit; Review | 99.97 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 99.97 | |
| TIGR01823 | 742 | PabB-fungal aminodeoxychorismate synthase, fungal | 99.97 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 99.97 | |
| cd01741 | 188 | GATase1_1 Subgroup of proteins having the Type 1 g | 99.97 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK13170 | 196 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 99.96 | |
| cd01748 | 198 | GATase1_IGP_Synthase Type 1 glutamine amidotransfe | 99.96 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK11366 | 254 | puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; | 99.95 | |
| PRK13181 | 199 | hisH imidazole glycerol phosphate synthase subunit | 99.95 | |
| PRK13141 | 205 | hisH imidazole glycerol phosphate synthase subunit | 99.94 | |
| PRK13152 | 201 | hisH imidazole glycerol phosphate synthase subunit | 99.94 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 99.94 | |
| TIGR01855 | 196 | IMP_synth_hisH imidazole glycerol phosphate syntha | 99.94 | |
| cd01747 | 273 | GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot | 99.94 | |
| PRK14004 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.94 | |
| cd01745 | 189 | GATase1_2 Subgroup of proteins having the Type 1 g | 99.94 | |
| cd01746 | 235 | GATase1_CTP_Synthase Type 1 glutamine amidotransfe | 99.93 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 99.93 | |
| PRK13525 | 189 | glutamine amidotransferase subunit PdxT; Provision | 99.93 | |
| PRK13527 | 200 | glutamine amidotransferase subunit PdxT; Provision | 99.93 | |
| PF07722 | 217 | Peptidase_C26: Peptidase C26; InterPro: IPR011697 | 99.93 | |
| KOG1224 | 767 | consensus Para-aminobenzoate (PABA) synthase ABZ1 | 99.92 | |
| COG2071 | 243 | Predicted glutamine amidotransferases [General fun | 99.92 | |
| KOG3179 | 245 | consensus Predicted glutamine synthetase [Nucleoti | 99.92 | |
| PRK06186 | 229 | hypothetical protein; Validated | 99.91 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.9 | |
| TIGR00337 | 525 | PyrG CTP synthase. CTP synthase is involved in pyr | 99.89 | |
| PRK05380 | 533 | pyrG CTP synthetase; Validated | 99.89 | |
| PRK13142 | 192 | hisH imidazole glycerol phosphate synthase subunit | 99.88 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.88 | |
| cd01749 | 183 | GATase1_PB Glutamine Amidotransferase (GATase_I) i | 99.88 | |
| TIGR03800 | 184 | PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl | 99.86 | |
| COG0504 | 533 | PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide | 99.86 | |
| PLN02327 | 557 | CTP synthase | 99.86 | |
| PRK05368 | 302 | homoserine O-succinyltransferase; Provisional | 99.84 | |
| TIGR01737 | 227 | FGAM_synth_I phosphoribosylformylglycinamidine syn | 99.82 | |
| KOG2387 | 585 | consensus CTP synthase (UTP-ammonia lyase) [Nucleo | 99.73 | |
| PRK03619 | 219 | phosphoribosylformylglycinamidine synthase I; Prov | 99.72 | |
| PLN02832 | 248 | glutamine amidotransferase subunit of pyridoxal 5' | 99.64 | |
| KOG1559 | 340 | consensus Gamma-glutamyl hydrolase [Coenzyme trans | 99.63 | |
| PRK13526 | 179 | glutamine amidotransferase subunit PdxT; Provision | 99.58 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 99.58 | |
| cd01740 | 238 | GATase1_FGAR_AT Type 1 glutamine amidotransferase | 99.43 | |
| PRK01175 | 261 | phosphoribosylformylglycinamidine synthase I; Prov | 99.31 | |
| COG0311 | 194 | PDX2 Predicted glutamine amidotransferase involved | 99.22 | |
| COG0047 | 231 | PurL Phosphoribosylformylglycinamidine (FGAM) synt | 99.2 | |
| PF13507 | 259 | GATase_5: CobB/CobQ-like glutamine amidotransferas | 99.01 | |
| PF01174 | 188 | SNO: SNO glutamine amidotransferase family; InterP | 99.0 | |
| PF04204 | 298 | HTS: Homoserine O-succinyltransferase ; InterPro: | 98.93 | |
| cd03131 | 175 | GATase1_HTS Type 1 glutamine amidotransferase (GAT | 98.89 | |
| TIGR01001 | 300 | metA homoserine O-succinyltransferase. The apparen | 98.72 | |
| TIGR01735 | 1310 | FGAM_synt phosphoribosylformylglycinamidine syntha | 98.62 | |
| cd01750 | 194 | GATase1_CobQ Type 1 glutamine amidotransferase (GA | 98.59 | |
| TIGR01857 | 1239 | FGAM-synthase phosphoribosylformylglycinamidine sy | 98.55 | |
| PLN03206 | 1307 | phosphoribosylformylglycinamidine synthase; Provis | 98.5 | |
| PRK05297 | 1290 | phosphoribosylformylglycinamidine synthase; Provis | 98.48 | |
| cd03130 | 198 | GATase1_CobB Type 1 glutamine amidotransferase (GA | 98.38 | |
| PHA03366 | 1304 | FGAM-synthase; Provisional | 98.02 | |
| KOG3210 | 226 | consensus Imidazoleglycerol-phosphate synthase sub | 97.95 | |
| TIGR01739 | 1202 | tegu_FGAM_synt herpesvirus tegument protein/v-FGAM | 97.93 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 97.92 | |
| cd01653 | 115 | GATase1 Type 1 glutamine amidotransferase (GATase1 | 97.76 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 97.68 | |
| PRK11780 | 217 | isoprenoid biosynthesis protein with amidotransfer | 97.67 | |
| COG1897 | 307 | MetA Homoserine trans-succinylase [Amino acid tran | 97.63 | |
| PF07685 | 158 | GATase_3: CobB/CobQ-like glutamine amidotransferas | 97.61 | |
| cd03128 | 92 | GAT_1 Type 1 glutamine amidotransferase (GATase1)- | 97.49 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 97.49 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 97.36 | |
| cd03169 | 180 | GATase1_PfpI_1 Type 1 glutamine amidotransferase ( | 97.28 | |
| TIGR01382 | 166 | PfpI intracellular protease, PfpI family. The memb | 96.96 | |
| COG3442 | 250 | Predicted glutamine amidotransferase [General func | 96.96 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 96.92 | |
| cd03134 | 165 | GATase1_PfpI_like A type 1 glutamine amidotransfer | 96.85 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 96.83 | |
| cd03133 | 213 | GATase1_ES1 Type 1 glutamine amidotransferase (GAT | 96.83 | |
| cd03132 | 142 | GATase1_catalase Type 1 glutamine amidotransferase | 96.82 | |
| KOG1907 | 1320 | consensus Phosphoribosylformylglycinamidine syntha | 96.56 | |
| cd03147 | 231 | GATase1_Ydr533c_like Type 1 glutamine amidotransfe | 96.53 | |
| PRK11574 | 196 | oxidative-stress-resistance chaperone; Provisional | 96.47 | |
| COG0693 | 188 | ThiJ Putative intracellular protease/amidase [Gene | 96.14 | |
| PRK05282 | 233 | (alpha)-aspartyl dipeptidase; Validated | 96.05 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 95.96 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 95.59 | |
| PRK04155 | 287 | chaperone protein HchA; Provisional | 95.55 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 95.39 | |
| PF01965 | 147 | DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T | 95.32 | |
| cd03140 | 170 | GATase1_PfpI_3 Type 1 glutamine amidotransferase ( | 95.27 | |
| PF09825 | 367 | BPL_N: Biotin-protein ligase, N terminal; InterPro | 95.27 | |
| cd03148 | 232 | GATase1_EcHsp31_like Type 1 glutamine amidotransfe | 95.25 | |
| cd03135 | 163 | GATase1_DJ-1 Type 1 glutamine amidotransferase (GA | 94.87 | |
| cd03129 | 210 | GAT1_Peptidase_E_like Type 1 glutamine amidotransf | 94.86 | |
| cd03141 | 221 | GATase1_Hsp31_like Type 1 glutamine amidotransfera | 94.83 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 94.38 | |
| PRK05568 | 142 | flavodoxin; Provisional | 93.98 | |
| cd03137 | 187 | GATase1_AraC_1 AraC transcriptional regulators hav | 93.71 | |
| PRK11104 | 177 | hemG protoporphyrinogen oxidase; Provisional | 93.62 | |
| cd03144 | 114 | GATase1_ScBLP_like Type 1 glutamine amidotransfera | 93.53 | |
| TIGR01383 | 179 | not_thiJ DJ-1 family protein. This model represent | 93.29 | |
| PF06283 | 217 | ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A. | 92.61 | |
| PRK05569 | 141 | flavodoxin; Provisional | 92.48 | |
| PF06490 | 109 | FleQ: Flagellar regulatory protein FleQ; InterPro: | 92.43 | |
| cd00886 | 152 | MogA_MoaB MogA_MoaB family. Members of this family | 92.43 | |
| cd03138 | 195 | GATase1_AraC_2 AraC transcriptional regulators hav | 92.35 | |
| TIGR02667 | 163 | moaB_proteo molybdenum cofactor biosynthesis prote | 92.12 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 91.93 | |
| cd03139 | 183 | GATase1_PfpI_2 Type 1 glutamine amidotransferase ( | 91.61 | |
| PF13278 | 166 | DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M | 90.44 | |
| KOG2764 | 247 | consensus Putative transcriptional regulator DJ-1 | 89.47 | |
| cd03136 | 185 | GATase1_AraC_ArgR_like AraC transcriptional regula | 89.13 | |
| PRK06756 | 148 | flavodoxin; Provisional | 88.85 | |
| smart00852 | 135 | MoCF_biosynth Probable molybdopterin binding domai | 88.62 | |
| TIGR02069 | 250 | cyanophycinase cyanophycinase. This model describe | 87.79 | |
| PRK03673 | 396 | hypothetical protein; Provisional | 86.96 | |
| cd03145 | 217 | GAT1_cyanophycinase Type 1 glutamine amidotransfer | 86.87 | |
| PRK14690 | 419 | molybdopterin biosynthesis protein MoeA; Provision | 86.53 | |
| COG0303 | 404 | MoeA Molybdopterin biosynthesis enzyme [Coenzyme m | 86.27 | |
| PRK14497 | 546 | putative molybdopterin biosynthesis protein MoeA/u | 85.22 | |
| PRK09393 | 322 | ftrA transcriptional activator FtrA; Provisional | 85.16 | |
| PRK09468 | 239 | ompR osmolarity response regulator; Provisional | 84.97 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 84.65 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 84.46 | |
| PRK10680 | 411 | molybdopterin biosynthesis protein MoeA; Provision | 84.43 | |
| cd00758 | 133 | MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin | 84.28 | |
| COG1440 | 102 | CelA Phosphotransferase system cellobiose-specific | 84.18 | |
| PRK01215 | 264 | competence damage-inducible protein A; Provisional | 84.16 | |
| PRK03767 | 200 | NAD(P)H:quinone oxidoreductase; Provisional | 83.72 | |
| PF00994 | 144 | MoCF_biosynth: Probable molybdopterin binding doma | 83.62 | |
| TIGR00177 | 144 | molyb_syn molybdenum cofactor synthesis domain. Th | 83.52 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 83.29 | |
| PF03698 | 80 | UPF0180: Uncharacterised protein family (UPF0180); | 83.27 | |
| COG1058 | 255 | CinA Predicted nucleotide-utilizing enzyme related | 83.23 | |
| cd00885 | 170 | cinA Competence-damaged protein. CinA is the first | 82.41 | |
| PRK09267 | 169 | flavodoxin FldA; Validated | 81.86 | |
| PF03575 | 154 | Peptidase_S51: Peptidase family S51; InterPro: IPR | 81.66 | |
| COG3340 | 224 | PepE Peptidase E [Amino acid transport and metabol | 81.18 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 81.15 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 81.06 | |
| PRK04539 | 296 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 80.69 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 80.56 | |
| PRK09417 | 193 | mogA molybdenum cofactor biosynthesis protein MogA | 80.5 |
| >COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=287.11 Aligned_cols=177 Identities=48% Similarity=0.844 Sum_probs=160.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
|+||++|||+|||++||+++++++ |+++.+++.+..+.++++..++|+||||||||.|.+.+...++|+++.++
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~l------g~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~ 74 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLREL------GAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGR 74 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHc------CCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCC
Confidence 578999999999999999999999 99999999876777777777899999999999999999999999999888
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEE
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAW 168 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~ 168 (203)
+||| |||||.|++++||+|.+.. .+.||+ +.+.+.. +.+|++++++|.+.+|||..+.++++ |+.++++|+
T Consensus 75 ~PiLGVCLGHQai~~~fGg~V~~a~-~~~HGK~s~i~h~g----~~iF~glp~~f~v~RYHSLvv~~~~l-P~~l~vtA~ 148 (191)
T COG0512 75 IPILGVCLGHQAIAEAFGGKVVRAK-EPMHGKTSIITHDG----SGLFAGLPNPFTVTRYHSLVVDPETL-PEELEVTAE 148 (191)
T ss_pred CCEEEECccHHHHHHHhCCEEEecC-CCcCCeeeeeecCC----cccccCCCCCCEEEeeEEEEecCCCC-CCceEEEEE
Confidence 9999 9999999999999999998 789999 4333332 57999999999999999999988776 499999999
Q ss_pred cCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 169 TED-GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 169 s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++ +.++|++++++| ++|+|||||+..|+.|.
T Consensus 149 ~~d~~~IMai~h~~~p-i~gvQFHPESilT~~G~ 181 (191)
T COG0512 149 SEDGGVIMAVRHKKLP-IYGVQFHPESILTEYGH 181 (191)
T ss_pred eCCCCEEEEEeeCCCC-EEEEecCCccccccchH
Confidence 965 599999999999 99999999999999985
|
|
| >PRK08007 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=270.02 Aligned_cols=175 Identities=46% Similarity=0.803 Sum_probs=153.6
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||++|||+|||+++++++|+++ |+++.++++++.+.+++...++|+||||||||+|.+.+...++++.+..++|
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~------g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~P 74 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCEL------GADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLP 74 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHC------CCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCC
Confidence 5999999999999999999999 9999999987667888876689999999999999988776777777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |+|||+||.++||+|.+.. ..++|. .++.+.. +++|++++..+.++++|++.|...+ +|++++++|+++
T Consensus 75 iLGIClG~Q~la~a~Gg~v~~~~-~~~~g~~~~v~~~~----~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~~~ 148 (187)
T PRK08007 75 ILGVCLGHQAMAQAFGGKVVRAA-KVMHGKTSPITHNG----EGVFRGLANPLTVTRYHSLVVEPDS-LPACFEVTAWSE 148 (187)
T ss_pred EEEECHHHHHHHHHcCCEEEeCC-CcccCCceEEEECC----CCcccCCCCCcEEEEcchhEEccCC-CCCCeEEEEEeC
Confidence 99 9999999999999999987 456775 6676543 4689999888999999999996433 468999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|+++.+.| +||+|||||+..++.|.
T Consensus 149 ~~~i~a~~~~~~~-i~GvQfHPE~~~t~~G~ 178 (187)
T PRK08007 149 TREIMGIRHRQWD-LEGVQFHPESILSEQGH 178 (187)
T ss_pred CCcEEEEEeCCCC-EEEEEeCCcccCCcchH
Confidence 9999999999987 99999999999998874
|
|
| >PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=267.75 Aligned_cols=175 Identities=46% Similarity=0.826 Sum_probs=152.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+||||+|||++++.++|+++ |+++.+++.+..+.+++...++|+|||+|||++|++.+.....++.+..++|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~------g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~P 74 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGEL------GQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIP 74 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHC------CCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCC
Confidence 5999999999999999999999 9999999987667777776689999999999999988776777777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |||||+|+.++||+|.+.+ ..++|. ..+.... +++|++++..+.+++||++.+..++ +|++++++|+++
T Consensus 75 vLGIClG~Qlla~~lGg~V~~~~-~~~~G~~~~i~~~~----~~lf~~~~~~~~v~~~H~~~v~~~~-lp~~~~~~a~s~ 148 (195)
T PRK07649 75 IFGVCLGHQSIAQVFGGEVVRAE-RLMHGKTSLMHHDG----KTIFSDIPNPFTATRYHSLIVKKET-LPDCLEVTSWTE 148 (195)
T ss_pred EEEEcHHHHHHHHHcCCEEeeCC-CcccCCeEEEEECC----ChhhcCCCCCCEEEEechheEeccc-CCCCeEEEEEcC
Confidence 99 9999999999999999987 456776 4454432 5799999999999999999995333 468999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|+++++++ +||+|||||+..++.|.
T Consensus 149 ~~~v~a~~~~~~~-i~gvQFHPE~~~t~~g~ 178 (195)
T PRK07649 149 EGEIMAIRHKTLP-IEGVQFHPESIMTSHGK 178 (195)
T ss_pred CCcEEEEEECCCC-EEEEEECCCCCCCccHH
Confidence 9999999999987 99999999999888774
|
|
| >PLN02335 anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=270.03 Aligned_cols=185 Identities=75% Similarity=1.261 Sum_probs=158.5
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELG 89 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~ 89 (203)
+..++|+|||++++|++++.++|+++ |+++.+++++..+.+++...++|+|||+|||++|++.+...+.+++++
T Consensus 16 ~~~~~ilviD~~dsft~~i~~~L~~~------g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~ 89 (222)
T PLN02335 16 KQNGPIIVIDNYDSFTYNLCQYMGEL------GCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELG 89 (222)
T ss_pred CccCcEEEEECCCCHHHHHHHHHHHC------CCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhC
Confidence 44689999999999999999999999 999999998655677776557999999999999998877667777777
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
.++||| |+|||+|+.++||++.+.+.+..+|. .++..+.. ..++||.+++..+.++++|+++|+.+++++.+++++
T Consensus 90 ~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~-~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~ 168 (222)
T PLN02335 90 PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEK-GEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVT 168 (222)
T ss_pred CCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCC-CCChhhhCCCCCCEEEechhheEecccCCCCceEEE
Confidence 889999 99999999999999998864456655 66766543 236899999999999999999998766654459999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
|+++++.+++++++++|++||+|||||+..+++|.
T Consensus 169 a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~ 203 (222)
T PLN02335 169 AWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGK 203 (222)
T ss_pred EEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHH
Confidence 99999999999999887799999999999988763
|
|
| >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=261.14 Aligned_cols=175 Identities=45% Similarity=0.773 Sum_probs=151.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||++|||++++.++++++ |+.+.+++++..+.+++.+.++|||||+||||+|.+.....++++++..++|
T Consensus 1 ~il~id~~dsft~~~~~~l~~~------g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~P 74 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCEL------GAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLP 74 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHc------CCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCC
Confidence 5999999999999999999999 9999999876566788877789999999999999876655677777767899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|| |+|||+|+.++||+|.+.. ..++|. .++.++. +++|.++++++.++++|++.|..+. +|++++++|+++
T Consensus 75 vLGIC~G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~~----~~~~~~l~~~~~v~~~H~~~v~~~~-l~~~~~v~a~s~ 148 (188)
T TIGR00566 75 ILGVCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHNG----AGIFRGLFNPLTATRYHSLVVEPET-LPTCFPVTAWEE 148 (188)
T ss_pred EEEECHHHHHHHHHcCCEEeeCC-CccccceEEEEECC----CccccCCCCCcEEEEcccceEeccc-CCCceEEEEEcC
Confidence 99 9999999999999999987 556774 7777654 4578888878999999999996444 468999999997
Q ss_pred CC-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DG-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++ .++|++++++| +||+|||||+..++.|.
T Consensus 149 ~~~~v~a~~~~~~~-i~gvQfHPE~~~t~~G~ 179 (188)
T TIGR00566 149 ENIEIMAIRHRDLP-LEGVQFHPESILSEQGH 179 (188)
T ss_pred CCCEEEEEEeCCCC-EEEEEeCCCccCCcccH
Confidence 65 99999999988 99999999999998875
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. |
| >PRK06774 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=259.54 Aligned_cols=176 Identities=44% Similarity=0.783 Sum_probs=149.6
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||++|||+|||+++++++|++. |+++.+++++..+.+++...++|+|||+|||++|.+.+....+++.+.+++|
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~------~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~P 74 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCEL------GTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLP 74 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHC------CCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCC
Confidence 5999999999999999999998 9999999987667888877789999999999999988776777777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcCC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTED 171 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 171 (203)
|| |+|||+|+.++||+|.+.. ..++|+..+..... +++|++++..+.++++|++.+...+ +|++++++|+++.
T Consensus 75 iLGIC~G~Qlla~~~GG~v~~~~-~~~~G~~~~~~~~~---~~lf~~l~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~~ 149 (191)
T PRK06774 75 ILGVCLGHQALGQAFGARVVRAR-QVMHGKTSAICHSG---QGVFRGLNQPLTVTRYHSLVIAADS-LPGCFELTAWSER 149 (191)
T ss_pred EEEECHHHHHHHHHhCCEEEeCC-cceecceEEEEecC---chhhcCCCCCcEEEEeCcceeeccC-CCCCeEEEEEeCC
Confidence 99 9999999999999999987 46788855544322 5799999888999999999995333 4689999999864
Q ss_pred C----cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 172 G----LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 172 ~----~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+ .++++++++.| +||+|||||+..++.|.
T Consensus 150 d~~~~~i~~~~~~~~~-i~GvQfHPE~~~~~~G~ 182 (191)
T PRK06774 150 GGEMDEIMGIRHRTLP-LEGVQFHPESILSEQGH 182 (191)
T ss_pred CCCcceEEEEEeCCCC-EEEEEECCCcCCCccHH
Confidence 2 46788888776 99999999998888773
|
|
| >CHL00101 trpG anthranilate synthase component 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=258.41 Aligned_cols=177 Identities=50% Similarity=0.875 Sum_probs=148.4
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||++|+|++++++++++. |+++.+++++..+.+++...++|||||+|||+++.+......+++.+..++|
T Consensus 1 ~iliid~~dsft~~l~~~l~~~------g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~P 74 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGEL------NSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIP 74 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhc------CCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCc
Confidence 5999999999999999999999 9999999876556767765579999999999999876655556655678899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcCC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTED 171 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 171 (203)
+| |+|||+|+.++||+|.+.+ ..++|........ .+++|.+++..+.++++|+|.|...+ +|++++++|++++
T Consensus 75 iLGIClG~Qlla~~~Gg~V~~~~-~~~~g~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~vla~s~~ 149 (190)
T CHL00101 75 ILGVCLGHQSIGYLFGGKIIKAP-KPMHGKTSKIYHN---HDDLFQGLPNPFTATRYHSLIIDPLN-LPSPLEITAWTED 149 (190)
T ss_pred EEEEchhHHHHHHHhCCEEEECC-CcccCceeeEeeC---CcHhhccCCCceEEEcchhheeeccc-CCCceEEEEEcCC
Confidence 99 9999999999999999987 4556763322222 25799999989999999999996433 4689999999999
Q ss_pred CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 172 GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 172 ~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+.+++++++++|++||+|||||++.++.|.
T Consensus 150 ~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 179 (190)
T CHL00101 150 GLIMACRHKKYKMLRGIQFHPESLLTTHGQ 179 (190)
T ss_pred CcEEEEEeCCCCCEEEEEeCCccCCChhHH
Confidence 999999999876699999999999888764
|
|
| >PRK05637 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=258.60 Aligned_cols=177 Identities=32% Similarity=0.529 Sum_probs=149.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
|++|++||++|||+++++++|+++ |+.+++++++ .+.+++...++|+|||+|||+++.+.+...++++....+
T Consensus 1 ~~~il~iD~~dsf~~nl~~~l~~~------g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~ 73 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVA------GYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQ 73 (208)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHC------CCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCC
Confidence 578999999999999999999999 9999999986 567777766899999999999998876656667655467
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCC------------CceEEeecccceeecC
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLS------------NPFTAGRYHGLVIEKD 156 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~------------~~~~~~~~H~~~v~~~ 156 (203)
+||| |+|||+|+.++||+|.+.. +++|. ..+.++..+..+++|.+++ .++.++++|++.|..
T Consensus 74 ~PiLGIClG~Qlla~alGG~V~~~~--~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~- 150 (208)
T PRK05637 74 IPLLGICLGFQALLEHHGGKVEPCG--PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV- 150 (208)
T ss_pred CCEEEEcHHHHHHHHHcCCeeccCC--cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc-
Confidence 9999 9999999999999999764 46666 5566665555578998875 358899999999987
Q ss_pred CCCCCCeEEEEEcCC--C-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 157 SFRSDELEVTAWTED--G-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 157 ~l~~~~~~~~a~s~~--~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+|++++++|++++ | .++++++.+.+ +||+|||||+.+|++|.
T Consensus 151 --lp~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T~~G~ 195 (208)
T PRK05637 151 --APDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLSPTGP 195 (208)
T ss_pred --CCCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcCCCHH
Confidence 7899999999754 4 46788888876 99999999999999985
|
|
| >PRK05670 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=254.13 Aligned_cols=175 Identities=51% Similarity=0.913 Sum_probs=148.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||++|+|++++.++|++. |+.+.+++++....+++...++|||||+||||++.+.+...++++++.+++|
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~------g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~P 74 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGEL------GAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVP 74 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHC------CCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCC
Confidence 5999999999999999999999 9999999986445666665579999999999999887766677777777899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |+|||+|+.++||+|.+.. ...+|. .++... .+++|.+++..+.++++|+|.|.+.+ +|++++++|+++
T Consensus 75 vLGIClG~Qlla~alGg~v~~~~-~~~~g~~~~v~~~----~~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~~la~s~ 148 (189)
T PRK05670 75 ILGVCLGHQAIGEAFGGKVVRAK-EIMHGKTSPIEHD----GSGIFAGLPNPFTVTRYHSLVVDRES-LPDCLEVTAWTD 148 (189)
T ss_pred EEEECHHHHHHHHHhCCEEEecC-CcccCceeEEEeC----CCchhccCCCCcEEEcchhheecccc-CCCceEEEEEeC
Confidence 99 9999999999999999887 456676 455522 26799999888999999999995323 468999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|++++++| +||+|||||+..+++|.
T Consensus 149 ~~~i~a~~~~~~~-~~gvQfHPE~~~~~~g~ 178 (189)
T PRK05670 149 DGEIMGVRHKELP-IYGVQFHPESILTEHGH 178 (189)
T ss_pred CCcEEEEEECCCC-EEEEeeCCCcCCCcchH
Confidence 9999999998877 99999999998777663
|
|
| >KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=241.96 Aligned_cols=184 Identities=74% Similarity=1.273 Sum_probs=170.2
Q ss_pred CCcEEEEeCCchHHHHHHHHH-HHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYM-GELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l-~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~ 90 (203)
...|++|||||||++++.+|| -+. |+.+.+++.|+.+.+++...++++++||+|||.|.|.+...+.++++..
T Consensus 18 n~piv~IDNYDSFT~Nv~qYL~~e~------g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~ 91 (223)
T KOG0026|consen 18 NGPIIVIDNYDSFTYNLCQYLMGEL------GCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGP 91 (223)
T ss_pred cCCEEEEecccchhHHHHHHhhhcc------CccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCC
Confidence 578999999999999999999 344 9999999999999999999999999999999999999988899999999
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
.+|+| |+|.|.|.+++||+|.+...+..||. .+|.++..++ ..+|+++++.+.+.+||+.....++|+.+.++++|
T Consensus 92 ~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~-~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTa 170 (223)
T KOG0026|consen 92 LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGE-EGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTA 170 (223)
T ss_pred CCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCCccc-cccccCCCCCeEEEeeeeeeeecccCCccceeeeE
Confidence 99999 99999999999999999876788998 7888876554 67999999999999999999999898879999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~ 202 (203)
|++++.+++.+|+.|.++-|+|||||+..+++|.+
T Consensus 171 wTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~ 205 (223)
T KOG0026|consen 171 WTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKT 205 (223)
T ss_pred eccCcEEEeeeccccccccceeecchhhhhhhhHH
Confidence 99999999999999988999999999999999863
|
|
| >PRK08857 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=253.13 Aligned_cols=175 Identities=41% Similarity=0.746 Sum_probs=148.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||++||++|||+++++++|+++ |+.+.+++++..+.+++.+.++|+||++|||+++++.+...++++.+..++|
T Consensus 1 ~il~id~~dsft~~~~~~l~~~------g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~P 74 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCEL------GAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLP 74 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHC------CCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCC
Confidence 5999999999999999999999 9999999977555666655679999999999999887766677777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |+|||+|+.++||+|.+.+ ..++|+ ..+..+. +++|.+++..+.+++||++.|...+ +|++++++|+++
T Consensus 75 iLGIClG~Qlia~a~Gg~v~~~~-~~~~G~~~~~~~~~----~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~s~ 148 (193)
T PRK08857 75 ILGVCLGHQAIAQVFGGQVVRAR-QVMHGKTSPIRHTG----RSVFKGLNNPLTVTRYHSLVVKNDT-LPECFELTAWTE 148 (193)
T ss_pred EEEEcHHHHHHHHHhCCEEEeCC-CceeCceEEEEECC----CcccccCCCccEEEEccEEEEEcCC-CCCCeEEEEEec
Confidence 99 9999999999999999987 456777 4555432 5799999888999999999997434 468999999885
Q ss_pred --C---CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 --D---GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 --~---~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+ +.+++++++++| +||+|||||+..+++|.
T Consensus 149 ~~~~~~~~i~~~~~~~~p-i~gvQfHPE~~~t~~g~ 183 (193)
T PRK08857 149 LEDGSMDEIMGFQHKTLP-IEAVQFHPESIKTEQGH 183 (193)
T ss_pred CcCCCcceEEEEEeCCCC-EEEEeeCCCcCCCcchH
Confidence 3 368999999987 99999999999999875
|
|
| >PRK06895 putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=251.91 Aligned_cols=175 Identities=30% Similarity=0.564 Sum_probs=148.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
+||+|||++|+|+++++++|+++ |+++.+++++..+++++. .+|+|||+|||+.+.+.+.+.++|+++..++
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~------g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~ 73 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKL------GVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHK 73 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHc------CCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCC
Confidence 68999999999999999999999 999999987644556665 5799999999998766566667777777789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
|+| |+|||+|+.++||+|.+.+ ...+|. ..+.... .+++|++++..+.++++|++.+..+++ |+++.++|.+
T Consensus 74 PiLGIClG~Qlla~~~Gg~V~~~~-~~~~g~~~~v~~~~---~~~l~~~~~~~~~v~~~Hs~~v~~~~l-p~~l~~~a~~ 148 (190)
T PRK06895 74 SILGVCLGHQTLCEFFGGELYNLN-NVRHGQQRPLKVRS---NSPLFDGLPEEFNIGLYHSWAVSEENF-PTPLEITAVC 148 (190)
T ss_pred CEEEEcHHHHHHHHHhCCeEeecC-CCccCceEEEEECC---CChhhhcCCCceEEEcchhheeccccc-CCCeEEEEEC
Confidence 999 9999999999999998876 345665 5665533 378999999999999999999975444 5889999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++.+++++++++| +||+|||||+..+++|.
T Consensus 149 ~~~~i~a~~~~~~p-i~GvQFHPE~~~~~~g~ 179 (190)
T PRK06895 149 DENVVMAMQHKTLP-IYGVQFHPESYISEFGE 179 (190)
T ss_pred CCCcEEEEEECCCC-EEEEEeCCCcCCCcchH
Confidence 89999999999988 99999999999998874
|
|
| >TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=239.28 Aligned_cols=171 Identities=26% Similarity=0.408 Sum_probs=147.6
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCc
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTMP 93 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~P 93 (203)
|+|||++++|++++.++++.+ |+++.+++++ .+++++...++|||||+||++++++... ..+++. ++.++|
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~------g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~P 72 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLREL------GVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVP 72 (188)
T ss_pred CEEEECCchHHHHHHHHHHHc------CCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCC
Confidence 689999999999999999999 9999999876 4567776556779999999999886543 345555 467899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcCC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTED 171 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 171 (203)
+| |+|||+|+.++||+|.+.. ..+.|+.++..+.. ++||.++++.+.++++|+|.+.. +|++++++|++++
T Consensus 73 ilGIC~G~Qll~~~lgg~v~~~~-~~~~g~~~v~~~~~---~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~vla~~~~ 145 (188)
T TIGR00888 73 VLGICYGMQLMAKQLGGEVGRAE-KREYGKAELEILDE---DDLFRGLPDESTVWMSHGDKVKE---LPEGFKVLATSDN 145 (188)
T ss_pred EEEECHHHHHHHHhcCceEecCC-CccceeEEEEEecC---CHhhcCCCCCcEEEeEccceeec---CCCCCEEEEECCC
Confidence 99 9999999999999999887 56788888877654 57999998889999999999976 6799999999999
Q ss_pred CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 172 GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 172 ~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+.++++++++++ +||+|||||++.+++|.
T Consensus 146 ~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~ 174 (188)
T TIGR00888 146 CPVAAMAHEEKP-IYGVQFHPEVTHTEYGN 174 (188)
T ss_pred CCeEEEEECCCC-EEEEeeCCccCCChhhH
Confidence 999999999877 99999999999887663
|
separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. |
| >cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=238.67 Aligned_cols=172 Identities=50% Similarity=0.836 Sum_probs=142.7
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCce
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPL 94 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pi 94 (203)
|+|||++++|+.++.++++++ |+++.+++++..........++||||++||++++.+......+++.+.+++|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~------G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~Pv 74 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLREL------GAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPI 74 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHc------CCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCE
Confidence 689999999999999999999 99999999864332211223799999999999987765544555556678999
Q ss_pred e--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCC--eEEEEEc
Q 037843 95 F--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDE--LEVTAWT 169 (203)
Q Consensus 95 l--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s 169 (203)
| |+|||+|+.++||+|.+.+ ...+|. .++.... +++|+++++.+.++++|+|.|.. ++.+ ++++|++
T Consensus 75 lGIC~G~Qlla~~~Gg~v~~~~-~~~~g~~~~v~~~~----~~~~~~~~~~~~~~~~H~~~v~~---~~~~~~~~~la~~ 146 (184)
T cd01743 75 LGVCLGHQAIAEAFGGKVVRAP-EPMHGKTSEIHHDG----SGLFKGLPQPFTVGRYHSLVVDP---DPLPDLLEVTAST 146 (184)
T ss_pred EEECHhHHHHHHHhCCEEEeCC-CCCcCceeEEEECC----CccccCCCCCcEEEeCcEEEEec---CCCCceEEEEEeC
Confidence 9 9999999999999999887 344454 6666542 67899999899999999999987 5555 9999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++.++|++++++| +||+|||||+..+++|.
T Consensus 147 ~~~~v~a~~~~~~~-i~gvQfHPE~~~~~~g~ 177 (184)
T cd01743 147 EDGVIMALRHRDLP-IYGVQFHPESILTEYGL 177 (184)
T ss_pred CCCeEEEEEeCCCC-EEEEeeCCCcCCCcchH
Confidence 99999999999987 99999999999999985
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese |
| >PRK07765 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=239.49 Aligned_cols=176 Identities=46% Similarity=0.760 Sum_probs=145.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcchHHHHHHH-hC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESGISFRTVLE-LG 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~ 89 (203)
+||+|+|++++|+.++.+++++. |+.+.+++++....++.. ..++|||||+|||+++.+.....+++++ ++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~------G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~ 74 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQL------GVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAA 74 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHc------CCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHh
Confidence 47999999999999999999999 999999987632222222 1269999999999998766655677777 46
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
+++||| |+|||+|+.++||+|.+.+ ..++|. ..+.+.. +.+|.++++.+.++++|++.+.+++ +|++++++
T Consensus 75 ~~~PiLGIC~G~Qlla~a~GG~v~~~~-~~~~g~~~~v~~~~----~~~~~~~~~~~~v~~~H~~~v~~~~-lp~~~~vl 148 (214)
T PRK07765 75 AGTPLLGVCLGHQAIGVAFGATVDRAP-ELLHGKTSSVHHTG----VGVLAGLPDPFTATRYHSLTILPET-LPAELEVT 148 (214)
T ss_pred CCCCEEEEccCHHHHHHHhCCEEeeCC-CCccCceeEEEECC----CccccCCCCccEEEecchheEeccc-CCCceEEE
Confidence 789999 9999999999999999876 455666 5666654 4588888888999999999996433 46899999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
|+++++.++|+++++++ +||+|||||+..++.|.
T Consensus 149 a~s~~~~vqa~~~~~~~-i~gvQfHPE~~~t~~g~ 182 (214)
T PRK07765 149 ARTDSGVIMAVRHRELP-IHGVQFHPESVLTEGGH 182 (214)
T ss_pred EEcCCCcEEEEEeCCCC-EEEEeeCCCcccCcchH
Confidence 99999999999999887 99999999998887765
|
|
| >PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=266.05 Aligned_cols=174 Identities=35% Similarity=0.584 Sum_probs=147.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc---ccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE---LTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~---~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
|.||+||||+|||+++++++|+++ |+++.+++.+. ...+++...++|+||||||||+|.+.+...++++.+
T Consensus 1 ~~~iLiIDn~dsft~nl~~~lr~~------g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~ 74 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSN------GHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRL 74 (531)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHC------CCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHH
Confidence 468999999999999999999999 99999988642 235666655789999999999999877665666656
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEV 165 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~ 165 (203)
..++||| |+|||+|+.++||+|.+.. ...+|+ ..+.+.. .++|.+++..+.+++||++.+.. +|+++++
T Consensus 75 ~~~iPILGIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~~~~----~~lf~~~~~~~~v~~~Hs~~v~~---lP~~l~v 146 (531)
T PRK09522 75 RGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDG----QAMFAGLTNPLPVARYHSLVGSN---IPAGLTI 146 (531)
T ss_pred hcCCCEEEEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEeecC----CccccCCCCCcEEEEehheeccc---CCCCcEE
Confidence 6789999 9999999999999999876 466777 4444332 56999999899999999999976 6799999
Q ss_pred EEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 166 TAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 166 ~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+|++ ++.++++++.+.+ +||+|||||+.+|++|.
T Consensus 147 lA~s-d~~v~ai~~~~~~-i~GVQFHPEs~~T~~G~ 180 (531)
T PRK09522 147 NAHF-NGMVMAVRHDADR-VCGFQFHPESILTTQGA 180 (531)
T ss_pred EEec-CCCEEEEEECCCC-EEEEEecCccccCcchH
Confidence 9975 6789999998877 99999999999999985
|
|
| >cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=232.31 Aligned_cols=170 Identities=28% Similarity=0.428 Sum_probs=141.5
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhCCCC
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG--ISFRTVLELGPTM 92 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~--~~~~~i~~~~~~~ 92 (203)
|+|||++++|+.++.++|+++ |+.+.+++++ .+.++....++|||||+||++++++.. .+.+.+. +.++
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~------G~~~~~~~~~-~~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~--~~~~ 71 (181)
T cd01742 1 ILILDFGSQYTHLIARRVREL------GVYSEILPNT-TPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIF--ELGV 71 (181)
T ss_pred CEEEECCCchHHHHHHHHHhc------CceEEEecCC-CChhhhcccCCCEEEECCCcccccccccchhhHHHH--hcCC
Confidence 689999999999999999999 9999999875 333333333789999999999887643 2222222 3579
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|+| |+|||+|+.++||+|.+.. .++.|+..+.... .+++|.+++.++.++++|++.|.. +|++++++|+++
T Consensus 72 PilGIC~G~Qll~~~~gg~v~~~~-~~~~G~~~v~~~~---~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~ 144 (181)
T cd01742 72 PVLGICYGMQLIAKALGGKVERGD-KREYGKAEIEIDD---SSPLFEGLPDEQTVWMSHGDEVVK---LPEGFKVIASSD 144 (181)
T ss_pred CEEEEcHHHHHHHHhcCCeEEeCC-CCcceEEEEEecC---CChhhcCCCCceEEEcchhhhhhh---cCCCcEEEEeCC
Confidence 999 9999999999999999887 5678887776543 377999999889999999999976 678999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++++++++++ +||+|||||++.+++|.
T Consensus 145 ~~~i~a~~~~~~~-~~g~QfHPE~~~~~~g~ 174 (181)
T cd01742 145 NCPVAAIANEEKK-IYGVQFHPEVTHTEKGK 174 (181)
T ss_pred CCCEEEEEeCCCc-EEEEEcCCccccCcChH
Confidence 9999999998776 99999999999987774
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK00758 GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=231.58 Aligned_cols=168 Identities=26% Similarity=0.362 Sum_probs=141.4
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCC-CEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKP-RGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~-dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
||+|||++++|++++.++++++ |+++.+++++ .+++++. ++ |||||+||+ +..+.....+++++ .++
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~------g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~~--~~~ 68 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYL------GVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLKE--LDV 68 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHc------CCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHHh--CCC
Confidence 5999999999999999999999 9999988865 4566776 45 999999998 33333334445543 569
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
||| |+|||+|+.++||+|.+.+ ..++|+..+..+.. +++|.++++.+.++++|+|.+.. +|++++++|+++
T Consensus 69 PilGIC~G~Q~L~~a~Gg~v~~~~-~~~~g~~~i~~~~~---~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~ 141 (184)
T PRK00758 69 PILGICLGHQLIAKAFGGEVGRGE-YGEYALVEVEILDE---DDILKGLPPEIRVWASHADEVKE---LPDGFEILARSD 141 (184)
T ss_pred CEEEEeHHHHHHHHhcCcEEecCC-CceeeeEEEEEcCC---ChhhhCCCCCcEEEeehhhhhhh---CCCCCEEEEECC
Confidence 999 9999999999999999987 56788877777643 67899999899999999999976 678999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|+++++++ +||+|||||++.+++|.
T Consensus 142 ~~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~ 171 (184)
T PRK00758 142 ICEVEAMKHKEKP-IYGVQFHPEVAHTEYGE 171 (184)
T ss_pred CCCEEEEEECCCC-EEEEEcCCccCCCchHH
Confidence 9999999998876 99999999999887764
|
|
| >COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=235.13 Aligned_cols=170 Identities=26% Similarity=0.320 Sum_probs=146.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch----HHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI----SFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~----~~~~i~ 86 (203)
+.+|+|+|++.++++.+.|++++. | +..++++++ .+.+++...++|||||+|||.++++.+. ...+|+
T Consensus 1 ~~~ilIld~g~q~~~li~r~~re~------g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~ 73 (198)
T COG0518 1 MRKILILDFGGQYLGLIARRLREL------GYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIK 73 (198)
T ss_pred CcEEEEEeCCCcHhHHHHHHHHHc------CCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHH
Confidence 468999999999999999999998 8 777776765 6677777667899999999999987763 356676
Q ss_pred Hh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCce-EEeecccceeecCCCCCCC
Q 037843 87 EL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF-TAGRYHGLVIEKDSFRSDE 162 (203)
Q Consensus 87 ~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~-~~~~~H~~~v~~~~l~~~~ 162 (203)
++ ..++||| |+|||+||.++||+|.+.. ..+.|+.+++.+. .. +++|++++..+ .++++|+|.|.. +|++
T Consensus 74 ~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~-~~E~G~~~v~~~~-~~-~~l~~gl~~~~~~v~~sH~D~v~~---lP~g 147 (198)
T COG0518 74 DAGVPGKPVLGICLGHQLLAKALGGKVERGP-KREIGWTPVELTE-GD-DPLFAGLPDLFTTVFMSHGDTVVE---LPEG 147 (198)
T ss_pred HhCCCCCCEEEEChhHHHHHHHhCCEEeccC-CCccceEEEEEec-Cc-cccccCCccccCccccchhCcccc---CCCC
Confidence 64 4667899 9999999999999999987 4899999999875 22 47999998877 599999999998 7899
Q ss_pred eEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 163 LEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 163 ~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++++|+|+.|+++|+++. .+ +||+|||||.++
T Consensus 148 ~~vlA~s~~cp~qa~~~~-~~-~~gvQFHpEv~~ 179 (198)
T COG0518 148 AVVLASSETCPNQAFRYG-KR-AYGVQFHPEVTH 179 (198)
T ss_pred CEEEecCCCChhhheecC-Cc-EEEEeeeeEEeH
Confidence 999999999999999998 45 999999999987
|
|
| >PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=261.99 Aligned_cols=175 Identities=50% Similarity=0.829 Sum_probs=149.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
||+||||+|||+++++++|+++ |.. +.++++++.+.+++...++|+|||+|||++|.+.+...++++.+..++
T Consensus 1 ~il~idn~dsft~nl~~~l~~~------g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~ 74 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGEL------GPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKV 74 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHc------CCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCC
Confidence 5999999999999999999999 885 777766666778887668999999999999988776667777777789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
||| |+|||+|+.++||+|.+.. ...+|. ..+.... +++|.+++..+.++++|++.|.... +|++++++|++
T Consensus 75 PvLGIClG~QlLa~a~Gg~V~~~~-~~~~G~~~~v~~~~----~~lf~~~~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s 148 (534)
T PRK14607 75 PILGVCLGHQAIGYAFGGKIVHAK-RILHGKTSPIDHNG----KGLFRGIPNPTVATRYHSLVVEEAS-LPECLEVTAKS 148 (534)
T ss_pred CEEEEcHHHHHHHHHcCCeEecCC-ccccCCceeEEECC----CcchhcCCCCcEEeeccchheeccc-CCCCeEEEEEc
Confidence 999 9999999999999999987 456776 5555432 5689999888999999999996434 46899999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++.+++++++++| +||+|||||+..+++|.
T Consensus 149 ~d~~i~a~~~~~~p-i~GvQFHPE~~~t~~g~ 179 (534)
T PRK14607 149 DDGEIMGIRHKEHP-IFGVQFHPESILTEEGK 179 (534)
T ss_pred CCCCEEEEEECCCC-EEEEEeCCCCCCChhHH
Confidence 99999999999988 99999999999888774
|
|
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=259.18 Aligned_cols=174 Identities=21% Similarity=0.292 Sum_probs=149.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch--HHH-HHHHh-
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI--SFR-TVLEL- 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~--~~~-~i~~~- 88 (203)
.+|+|||++++|++++.++++++ |+.+++++++ .+.+++...++|||||||||+++++.+. +.. +++.+
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrel------gv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~ 83 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVREL------GVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCR 83 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHC------CCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHH
Confidence 57999999999999999999999 9999999886 6788887667999999999999886532 222 23322
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCc--eEEeecccceeecCCCCCCCeE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNP--FTAGRYHGLVIEKDSFRSDELE 164 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~--~~~~~~H~~~v~~~~l~~~~~~ 164 (203)
..++||| |+|||+|+.++||+|.+.. ..++|+..+.+... ++||+++++. +.++++|+|.+.. +|++++
T Consensus 84 ~~~iPILGIClG~QlLa~alGG~V~~~~-~~e~G~~~v~i~~~---~~Lf~~l~~~~~~~v~~~Hsd~V~~---lP~g~~ 156 (536)
T PLN02347 84 ERGVPVLGICYGMQLIVQKLGGEVKPGE-KQEYGRMEIRVVCG---SQLFGDLPSGETQTVWMSHGDEAVK---LPEGFE 156 (536)
T ss_pred hcCCcEEEECHHHHHHHHHcCCEEEecC-CcccceEEEEEcCC---ChhhhcCCCCceEEEEEEEEEEeee---CCCCCE
Confidence 4679999 9999999999999999886 57899988876432 6799999876 8899999999977 679999
Q ss_pred EEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 165 VTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 165 ~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++|+++++.++++++.+.| +||+|||||+++++.|.
T Consensus 157 vlA~s~~~~iaai~~~~~~-i~GvQFHPE~~~t~~G~ 192 (536)
T PLN02347 157 VVAKSVQGAVVAIENRERR-IYGLQYHPEVTHSPKGM 192 (536)
T ss_pred EEEEeCCCcEEEEEECCCC-EEEEEccCCCCccchHH
Confidence 9999999999999998877 99999999999998874
|
|
| >PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=229.43 Aligned_cols=174 Identities=33% Similarity=0.486 Sum_probs=142.2
Q ss_pred EEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH--hccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCC
Q 037843 16 VVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL--KRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTM 92 (203)
Q Consensus 16 ~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l--~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~ 92 (203)
||||+|++|++++.++++++ |+++++++++. +..+. ...++|||||+||++++++......+++.+ ++++
T Consensus 1 lviD~~~~~~~~l~~~l~~~------~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALREL------GIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHT------TEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred CEEeCCHHHHHHHHHHHHHC------CCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccce
Confidence 68999999999999999999 99999998763 33332 234799999999999999855556666663 5789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
|+| |+|||+|+.++|++|.+.......|+ ..+..+.. +++|.++++.+.++++|+|.|.+..++|++++++|++
T Consensus 74 PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s 150 (192)
T PF00117_consen 74 PILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPE---DPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASS 150 (192)
T ss_dssp EEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEE---HGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEE
T ss_pred EEEEEeehhhhhHHhcCCcccccccccccccccccccccc---cccccccccccccccccceeeeccccccccccccccc
Confidence 999 99999999999999998762344555 44444332 5899999999999999999998533346899999999
Q ss_pred CC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 170 ED-GLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 170 ~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++ +.++++.+.++| +||+|||||++.++.|
T Consensus 151 ~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~ 181 (192)
T PF00117_consen 151 SDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGG 181 (192)
T ss_dssp TTTTEEEEEEECTTS-EEEESSBTTSTTSTTH
T ss_pred ccccccccccccccE-EEEEecCCcCCCCCCc
Confidence 65 489999999987 9999999999998865
|
The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B .... |
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=253.61 Aligned_cols=173 Identities=26% Similarity=0.424 Sum_probs=149.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch--HHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI--SFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~--~~~~i~~~~ 89 (203)
+.+|+|||++++|++++.++++++ |+..++++++ .+.+++...++|||||+||+.++++.+. +.+.+ +.
T Consensus 3 ~~~i~vlD~Gsq~~~li~r~lrel------g~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~ 73 (511)
T PRK00074 3 HDKILILDFGSQYTQLIARRVREL------GVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FE 73 (511)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHC------CCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCccccHHH--Hh
Confidence 467999999999999999999999 9999999875 5677887667899999999998876542 22222 34
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
.++||| |+|||+|+.++||+|.+.. ..+.|+..+.++.+ ++||++++..+.++++|+|.|.. +|++++++|
T Consensus 74 ~~~PvLGIC~G~QlLa~~lGG~V~~~~-~~e~G~~~i~i~~~---~~Lf~~l~~~~~v~~~H~d~V~~---lp~g~~vlA 146 (511)
T PRK00074 74 LGVPVLGICYGMQLMAHQLGGKVERAG-KREYGRAELEVDND---SPLFKGLPEEQDVWMSHGDKVTE---LPEGFKVIA 146 (511)
T ss_pred CCCCEEEECHHHHHHHHHhCCeEEecC-CcccceEEEEEcCC---ChhhhcCCCceEEEEECCeEEEe---cCCCcEEEE
Confidence 679999 9999999999999999886 57889888877542 67999998889999999999987 789999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++++.++++++.+.+ +||+|||||++++++|.
T Consensus 147 ~s~~~~v~ai~~~~~~-i~GvQFHPE~~~t~~G~ 179 (511)
T PRK00074 147 STENCPIAAIANEERK-FYGVQFHPEVTHTPQGK 179 (511)
T ss_pred EeCCCCEEEEEeCCCC-EEEEeCCCCcCCchhHH
Confidence 9999999999988777 99999999999998774
|
|
| >PLN02889 oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=263.38 Aligned_cols=176 Identities=37% Similarity=0.597 Sum_probs=148.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-----cCCCEEEECCCCCCCCC---cchHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-----KKPRGVVISPGPGAPQE---SGISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-----~~~dgiil~GG~~~~~~---~~~~~~~ 84 (203)
+|||+|||||||++||+++|+++. |+.+.++++++.+.+++.. ..||+|||+||||+|.. .+...++
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~-----g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~ 156 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVN-----GVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRL 156 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHH
Confidence 579999999999999999998873 8888899888777777643 36899999999999964 3344566
Q ss_pred HHHhCCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCC----ceEEeecccceeecCC
Q 037843 85 VLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSN----PFTAGRYHGLVIEKDS 157 (203)
Q Consensus 85 i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~----~~~~~~~H~~~v~~~~ 157 (203)
|.++ .++||| |||||+|+.++||+|.+.+ .++||. ..|.+.. ..+|++++. .|.+.+||+..|...+
T Consensus 157 i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~~-~~~HG~~s~I~h~~----~~lF~glp~~~~~~f~v~RYHSL~v~~~~ 230 (918)
T PLN02889 157 LLEC-RDIPILGVCLGHQALGYVHGARIVHAP-EPVHGRLSEIEHNG----CRLFDDIPSGRNSGFKVVRYHSLVIDAES 230 (918)
T ss_pred HHHh-CCCcEEEEcHHHHHHHHhcCceEEeCC-CceeeeeeeEeecC----chhhcCCCcCCCCCceEEeCCCcccccCC
Confidence 6654 469999 9999999999999999998 688998 6676653 579999986 5999999999997555
Q ss_pred CCCCCeEEEEEcCC-----------------------------------------------------CcEEEEEeCCCCc
Q 037843 158 FRSDELEVTAWTED-----------------------------------------------------GLIMAARHKKYKH 184 (203)
Q Consensus 158 l~~~~~~~~a~s~~-----------------------------------------------------~~v~a~~~~~~~~ 184 (203)
+ |++++++|++++ +.++|++|+.+|
T Consensus 231 l-P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P- 308 (918)
T PLN02889 231 L-PKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRP- 308 (918)
T ss_pred C-CCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCc-
Confidence 4 589999998854 479999999998
Q ss_pred EEEEcCCCCCCCCCCCC
Q 037843 185 LHGVQFHPESILTSEGK 201 (203)
Q Consensus 185 i~gvQfHPE~~~~~~g~ 201 (203)
+||||||||...++.|.
T Consensus 309 ~~GVQfHPESi~t~~G~ 325 (918)
T PLN02889 309 HYGLQFHPESIATCYGR 325 (918)
T ss_pred eEEEEeCCccccCchhH
Confidence 99999999999999874
|
|
| >TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=252.40 Aligned_cols=175 Identities=39% Similarity=0.650 Sum_probs=146.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~ 90 (203)
+++|+|||++++|++++.++|++. |+.+.+++++ ...+.+...++|+|||+||||++.+.+. ..+|++ +..
T Consensus 516 ~~~IlVID~gds~~~~l~~~L~~~------G~~v~vv~~~-~~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~ 587 (717)
T TIGR01815 516 GRRILLVDHEDSFVHTLANYLRQT------GASVTTLRHS-HAEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALAR 587 (717)
T ss_pred CCEEEEEECCChhHHHHHHHHHHC------CCeEEEEECC-CChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHC
Confidence 578999999999999999999999 9999988865 2222333347899999999999987654 345555 567
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++|+| |+|||+|+.++||+|.+.+ .+++|+ ..+..... +++|.+++..+.+++||++.+.... +|+++.++|
T Consensus 588 ~iPvLGICLG~QlLa~a~GG~V~~~~-~p~~G~~~~V~~~~~---~~Lf~~lp~~~~v~~~HS~~~~~~~-LP~~~~vlA 662 (717)
T TIGR01815 588 GLPVFGVCLGLQGMVEAFGGALDVLP-EPVHGKASRIRVLGP---DALFAGLPERLTVGRYHSLFARRDR-LPAELTVTA 662 (717)
T ss_pred CCCEEEECHHHHHHhhhhCCEEEECC-CCeeCcceEEEECCC---ChhhhcCCCCCEEEEECCCCccccc-CCCCeEEEE
Confidence 89999 9999999999999999987 467885 67766543 6799999999999999999875434 468999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+++++.++|+++++.| +||+|||||+..++.|
T Consensus 663 ~s~d~~v~Ai~~~~~~-i~GVQFHPEsi~T~sg 694 (717)
T TIGR01815 663 ESADGLIMAIEHRRLP-LAAVQFHPESIMTLDG 694 (717)
T ss_pred EeCCCcEEEEEECCCC-EEEEEeCCeeCCccCc
Confidence 9999999999999887 9999999999888765
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. |
| >PRK13566 anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=250.36 Aligned_cols=174 Identities=39% Similarity=0.629 Sum_probs=147.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~ 90 (203)
.++|+|||++++|.+++.++++.. |+++.+++++ .+.+.+...++|+|||+||||++.+.+. ..+++. +++
T Consensus 526 g~~IlvID~~dsf~~~l~~~Lr~~------G~~v~vv~~~-~~~~~~~~~~~DgVVLsgGpgsp~d~~~-~~lI~~a~~~ 597 (720)
T PRK13566 526 GKRVLLVDHEDSFVHTLANYFRQT------GAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFDC-KATIDAALAR 597 (720)
T ss_pred CCEEEEEECCCchHHHHHHHHHHC------CCEEEEEECC-CChhHhhhcCCCEEEECCCCCChhhCCc-HHHHHHHHHC
Confidence 578999999999999999999999 9999999886 3444444457999999999999877553 456666 467
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++||| |+|||+|+.++||++.+.. .+.+|+ .+|.+... ++||++++..+.++++|++.+....+ |++++++|
T Consensus 598 ~iPILGIClG~QlLa~alGG~V~~~~-~~~~G~~~~V~v~~~---~~Lf~~lp~~~~v~~~Hs~~v~~~~L-p~~~~vlA 672 (720)
T PRK13566 598 NLPIFGVCLGLQAIVEAFGGELGQLA-YPMHGKPSRIRVRGP---GRLFSGLPEEFTVGRYHSLFADPETL-PDELLVTA 672 (720)
T ss_pred CCcEEEEehhHHHHHHHcCCEEEECC-CCccCCceEEEECCC---CchhhcCCCCCEEEEecceeEeeccC-CCceEEEE
Confidence 89999 9999999999999999987 455665 77877654 57999999999999999998865444 58999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+++++.+++++++++| +||+|||||+..+..
T Consensus 673 ~s~dg~V~ai~~~~~p-i~GVQFHPE~i~t~~ 703 (720)
T PRK13566 673 ETEDGVIMAIEHKTLP-VAAVQFHPESIMTLG 703 (720)
T ss_pred EeCCCcEEEEEECCCC-EEEEeccCeeCCcCC
Confidence 9999999999999887 999999999988744
|
|
| >cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=207.71 Aligned_cols=162 Identities=29% Similarity=0.469 Sum_probs=128.0
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCc
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTMP 93 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~P 93 (203)
|+|||++++ +++++++++. |+.+.+++++ .+.+++...++|||||+||++++.+.....+++++ +++++|
T Consensus 1 i~i~d~g~~--~~~~~~l~~~------G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 1 VVVIDFGVK--HNILRELLKR------GCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred CEEEecCcH--HHHHHHHHHC------CCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCC
Confidence 689999986 4789999998 9999999876 45555554479999999999988766556667776 467799
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc-
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT- 169 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s- 169 (203)
+| |+|||+|+.++||++.+... ..+|. +++..... ...+.++++|++.+.++++ |++++++|++
T Consensus 72 vlGIC~G~Q~l~~~~Gg~v~~~~~-~~~g~~~~v~~~~~----------~~~~~v~~~H~~~v~~~~l-p~~~~v~a~s~ 139 (178)
T cd01744 72 IFGICLGHQLLALALGAKTYKMKF-GHRGSNHPVKDLIT----------GRVYITSQNHGYAVDPDSL-PGGLEVTHVNL 139 (178)
T ss_pred EEEECHHHHHHHHHcCCceecCCC-CCCCCceeeEEcCC----------CCcEEEEcCceEEEccccc-CCceEEEEEEC
Confidence 99 99999999999999998652 23343 45543321 1235678899999975444 5899999998
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
+++.+++++++++| +||+|||||+..++
T Consensus 140 ~~~~i~a~~~~~~~-i~GvQfHPE~~~~~ 167 (178)
T cd01744 140 NDGTVEGIRHKDLP-VFSVQFHPEASPGP 167 (178)
T ss_pred CCCcEEEEEECCCC-eEEEeeCCCCCCCC
Confidence 57899999999888 99999999998764
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is |
| >PRK09065 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=220.14 Aligned_cols=172 Identities=23% Similarity=0.217 Sum_probs=136.0
Q ss_pred CCcEEEEeC----------CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcch
Q 037843 12 KNPIVVIDN----------YDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESGI 80 (203)
Q Consensus 12 ~~~i~iid~----------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~~ 80 (203)
|++|+|+.. +++|...+.+.++.. |.++.+++.... ...++. ++|||||+||+.+.++...
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~--~~dgvvi~Gg~~~~~d~~~ 72 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLA------EQPVVVVRVFAGEPLPAPD--DFAGVIITGSWAMVTDRLD 72 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccC------CceEEEEeccCCCCCCChh--hcCEEEEeCCCcccCCCch
Confidence 456777733 344556666666666 888887765421 122333 6899999999999877543
Q ss_pred H----HHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeeccccee
Q 037843 81 S----FRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVI 153 (203)
Q Consensus 81 ~----~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v 153 (203)
+ .++|++ +..++||| |+|||+|+.++||+|.+.+.+.+.|+..+.++..+..+++|+++++.+.++++|++.|
T Consensus 73 w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v 152 (237)
T PRK09065 73 WSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTHLQSV 152 (237)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccChhhhcCCccCcEeeehhhhh
Confidence 2 455666 46789999 9999999999999999876567889989988776666789999999999999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.. +|++++++|+++++.++++++++ ++||+|||||++.
T Consensus 153 ~~---lp~~~~~la~s~~~~iqa~~~~~--~i~gvQfHPE~~~ 190 (237)
T PRK09065 153 LR---LPPGAVVLARSAQDPHQAFRYGP--HAWGVQFHPEFTA 190 (237)
T ss_pred hh---CCCCCEEEEcCCCCCeeEEEeCC--CEEEEEeCCcCCH
Confidence 76 68999999999999999999976 4999999999864
|
|
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=227.92 Aligned_cols=166 Identities=25% Similarity=0.391 Sum_probs=138.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
.+|+++|++. .+++.++|+++ |+.++++|++ .+.+++.+.++||||||||||+|.+.....+.++++..++
T Consensus 241 ~~IvviD~G~--K~nIlr~L~~~------G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~i 311 (415)
T PLN02771 241 YHVIAYDFGI--KHNILRRLASY------GCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKV 311 (415)
T ss_pred CEEEEECCCh--HHHHHHHHHHc------CCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCC
Confidence 5899999875 89999999999 9999999986 5677877778999999999999987777777777754579
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc-
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT- 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s- 169 (203)
||| |||||+|+.++||++.+++.+++.+++++.....+ ....+.++|+|.|.++++ |+++++++.+
T Consensus 312 PIlGICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~~~~~----------~v~itsqnHg~aVd~~sL-p~~~~vt~~nl 380 (415)
T PLN02771 312 PVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRTG----------RVEISAQNHNYAVDPASL-PEGVEVTHVNL 380 (415)
T ss_pred CEEEEcHHHHHHHHhcCCeEEECCCCcccceEEEEECCCC----------CEEEEecCHHHhhccccC-CCceEEEEEeC
Confidence 999 99999999999999999886554445777654321 113567899999976665 5899999987
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+|+.+++++++++| ++|+|||||....|.
T Consensus 381 nDgtvegi~~~~~p-i~gVQFHPEa~pgp~ 409 (415)
T PLN02771 381 NDGSCAGLAFPALN-VMSLQYHPEASPGPH 409 (415)
T ss_pred CCCcEEEEEECCCC-EEEEEcCCCCCCCCC
Confidence 68999999999998 999999999987664
|
|
| >PRK07053 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=215.09 Aligned_cols=172 Identities=21% Similarity=0.228 Sum_probs=138.4
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc---h---HHH
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG---I---SFR 83 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~---~---~~~ 83 (203)
||++|+||.+...- ..++.+++++. |..+.+++.+..........++|+|||+||+.++++.. . ..+
T Consensus 1 ~m~~ilviqh~~~e~~g~i~~~L~~~------g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~ 74 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLGAR------GYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIA 74 (234)
T ss_pred CCceEEEEECCCCCCChHHHHHHHHC------CCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHH
Confidence 57889999876533 67899999998 99999887642211011122689999999999887643 2 346
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
+|++ +..++|+| |+|||+|+.++||+|.+.. ..+.|+.+|.++..+..++++ +++..+.++++|++.+. +|
T Consensus 75 ~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~i~~t~~g~~~pl~-~~~~~~~~~~~H~d~~~----lP 148 (234)
T PRK07053 75 LLRQRLAAGLPTLGICLGAQLIARALGARVYPGG-QKEIGWAPLTLTDAGRASPLR-HLGAGTPVLHWHGDTFD----LP 148 (234)
T ss_pred HHHHHHHCCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEEEEEEeccccCChhh-cCCCcceEEEEeCCEEe----cC
Confidence 6666 46789999 9999999999999999875 688999999988776666664 67778899999999985 57
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 161 ~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++++++|+|+.|.+|+++..+ ++||+|||||++.
T Consensus 149 ~ga~~La~s~~~~~qaf~~g~--~~~g~QfHpE~~~ 182 (234)
T PRK07053 149 EGATLLASTPACRHQAFAWGN--HVLALQFHPEARE 182 (234)
T ss_pred CCCEEEEcCCCCCeeEEEeCC--CEEEEeeCccCCH
Confidence 999999999999999999865 5999999999875
|
|
| >PRK12564 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-31 Score=223.31 Aligned_cols=166 Identities=29% Similarity=0.451 Sum_probs=134.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~ 90 (203)
..+|++||++ +.+++.++|++. |+.+.+++++ .+.+++...++|||||||||++|.+.....++++++ +.
T Consensus 177 ~~~I~viD~G--~k~nivr~L~~~------G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~ 247 (360)
T PRK12564 177 KYKVVAIDFG--VKRNILRELAER------GCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEK 247 (360)
T ss_pred CCEEEEEeCC--cHHHHHHHHHHC------CCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHc
Confidence 4689999997 478999999999 9999999986 567777666799999999999987655556667764 56
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++|+| |+|||+|+.++||++.+++.++ +|. +++..... ...+.+.++|+|+|+++++ |+++++++
T Consensus 248 ~~PilGIClG~QlLa~a~Gg~v~kl~~gh-~G~~~pv~~~~~----------~~~~its~~H~~~V~~~~l-p~~l~v~a 315 (360)
T PRK12564 248 KIPIFGICLGHQLLALALGAKTYKMKFGH-RGANHPVKDLET----------GKVEITSQNHGFAVDEDSL-PANLEVTH 315 (360)
T ss_pred CCeEEEECHHHHHHHHHhCCcEeccCCCc-cCCceeeEECCC----------CcEEEEecCcccEEccccc-CCceEEEE
Confidence 89999 9999999999999999987443 343 66655432 1235677899999976555 58899999
Q ss_pred Ec-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 168 WT-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 168 ~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
++ +++.+++++++++| +||+|||||+...+.
T Consensus 316 ~~~~Dg~iegi~~~~~p-i~gVQfHPE~~~gp~ 347 (360)
T PRK12564 316 VNLNDGTVEGLRHKDLP-AFSVQYHPEASPGPH 347 (360)
T ss_pred EeCCCCcEEEEEECCCC-EEEEEeCCcCCCCCC
Confidence 98 68899999999998 999999999988664
|
|
| >TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=223.34 Aligned_cols=167 Identities=27% Similarity=0.431 Sum_probs=133.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
++|++||++ +.+++.++|++. |+.+.+++++ .+.+++....+|||||+|||++|.+.....++++++.+++
T Consensus 174 ~~i~viD~G--~k~ni~~~L~~~------G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~ 244 (358)
T TIGR01368 174 KRVVVIDFG--VKQNILRRLVKR------GCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKI 244 (358)
T ss_pred cEEEEEeCC--cHHHHHHHHHHC------CCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 589999996 568999999999 9999999876 5677776656899999999999876555566677743389
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc-
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT- 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s- 169 (203)
||| |+|||+|+.++||++.++..++....+++..... . ..+.+.++|+++|.+++++.+++++++++
T Consensus 245 PILGIClG~QlLa~a~Gg~v~kl~~gh~G~nhpV~~~~~---~-------~v~itsqnH~~aV~~~~l~~~~l~vta~~~ 314 (358)
T TIGR01368 245 PIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVKDLIT---G-------RVEITSQNHGYAVDPDSLPAGDLEVTHVNL 314 (358)
T ss_pred CEEEECHHHHHHHHHhCCceeccCcCcCCCceeeEECCC---C-------cEEEeecCCCcEEcccccCCCceEEEEEEC
Confidence 999 9999999999999999987443333366655332 1 12455689999998766655789999998
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+|+.+++++++++| +||+|||||+...+.
T Consensus 315 nDg~Vegi~h~~~p-i~gVQfHPE~~~gp~ 343 (358)
T TIGR01368 315 NDGTVEGIRHKDLP-VFSVQYHPEASPGPH 343 (358)
T ss_pred CCCcEEEEEECCCC-EEEEEECCCCCCCCC
Confidence 68899999999998 999999999987654
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. |
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=213.77 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=132.7
Q ss_pred CCCcEEEEeCCc-hHHHHHHHHHHHhhhhhcCCceEEEEeCCc--ccHHHHhccCCCEEEECCCCCCCCCcchH----HH
Q 037843 11 DKNPIVVIDNYD-SFTYNLCQYMGELELELSQGYHFEVYRNDE--LTVAELKRKKPRGVVISPGPGAPQESGIS----FR 83 (203)
Q Consensus 11 ~~~~i~iid~~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~--~~~~~l~~~~~dgiil~GG~~~~~~~~~~----~~ 83 (203)
.+++|+||++.+ ++..++.++|++. |..+.++++.. ..++++. ++||+||+||++++++...+ .+
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~~------g~~~~v~~~~~~~~~p~~l~--~~dgvii~Ggp~~~~d~~~wi~~~~~ 77 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQER------GYPLDIRRPRLGDPLPDTLE--DHAGAVIFGGPMSANDPDDFIRREID 77 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHHC------CCceEEEeccCCCCCCCccc--ccCEEEEECCCCCCCCCchHHHHHHH
Confidence 468899996655 7899999999999 99998876531 1223343 68999999999999876643 45
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccc-cccceeEEEcccccccccccCCCCceEEeecccceeecCCCC
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVS-CMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFR 159 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~ 159 (203)
+|++ +..++|+| |+|||+|+.++||+|.+.+.+. +.|+..+.++.. .+++.+++ ..++++|++.+ . +
T Consensus 78 ~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~~---~~~~~~~~--~~~~~~H~d~~-~---l 148 (239)
T PRK06490 78 WISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTEA---GRALMHWP--EMVYHWHREGF-D---L 148 (239)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceEEeEECCC---cccccCCC--CEEEEECCccc-c---C
Confidence 5665 46789999 9999999999999999986444 788888888764 33455554 45888999984 3 6
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 160 SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 160 ~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|++++++|+|++|.++++++.+ ++||+|||||++.
T Consensus 149 P~~~~~LA~s~~~~~qa~~~~~--~v~g~QfHPE~~~ 183 (239)
T PRK06490 149 PAGAELLATGDDFPNQAFRYGD--NAWGLQFHPEVTR 183 (239)
T ss_pred CCCCEEEEeCCCCCeEEEEeCC--CEEEEeeCccCCH
Confidence 7999999999999999999976 4999999999883
|
|
| >PRK07567 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=214.86 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=133.8
Q ss_pred CCcEEEEeCCchHH---HHHHHHHHHhhhhhcCCce---EEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCc----c
Q 037843 12 KNPIVVIDNYDSFT---YNLCQYMGELELELSQGYH---FEVYRNDELT--VAELKRKKPRGVVISPGPGAPQES----G 79 (203)
Q Consensus 12 ~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g~~---~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~----~ 79 (203)
|++|+|+.+..... ..+.++++.. |.. +.+++.+... +.++. +||||||+||++++++. .
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~dgvIi~Gg~~~~~d~~~~~~ 72 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRYT------GLDPAELRRIRLDREPLPDLDLD--DYSGVIVGGSPFNVSDPAESKS 72 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHhc------CCCccceEEEecccCCCCCCCHh--hccEEEEcCCCCcCCCCCCccc
Confidence 45699998776532 4577777776 654 5555443221 11333 68999999999999875 1
Q ss_pred hH----H----HHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeec
Q 037843 80 IS----F----RTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY 148 (203)
Q Consensus 80 ~~----~----~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~ 148 (203)
.+ . ++++. ...++||| |+|||+|+.++||+|.+.. +.+.|+.++.++..+..+++|.+++..+.++++
T Consensus 73 pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~-g~e~G~~~v~l~~~g~~~~l~~~~~~~~~~~~~ 151 (242)
T PRK07567 73 PWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTY-GEPVGAVTVSLTDAGRADPLLAGLPDTFTAFVG 151 (242)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCC-CCcCccEEEEECCccCCChhhcCCCCceEEEee
Confidence 11 1 22332 26789999 9999999999999999843 678899999988766668899999999999999
Q ss_pred ccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 149 HGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 149 H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
|++.|.. +|++++++|+++++.+|++++.+ ++||+|||||++..
T Consensus 152 H~d~V~~---lp~~~~vlA~s~~~~vqa~~~~~--~~~gvQfHPE~~~~ 195 (242)
T PRK07567 152 HKEAVSA---LPPGAVLLATSPTCPVQMFRVGE--NVYATQFHPELDAD 195 (242)
T ss_pred hhhhhhh---CCCCCEEEEeCCCCCEEEEEeCC--CEEEEEeCCcCCHH
Confidence 9999976 68999999999999999999876 49999999998753
|
|
| >CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=221.67 Aligned_cols=166 Identities=23% Similarity=0.427 Sum_probs=133.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~ 90 (203)
.++|+|||+ ++++++.++|+++ |+.+.+++++ .+.+++...++||||||||||+|.+...+.+.++++ ..
T Consensus 192 ~~~I~viD~--g~k~ni~~~L~~~------G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~ 262 (382)
T CHL00197 192 QLKIIVIDF--GVKYNILRRLKSF------GCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKY 262 (382)
T ss_pred CCEEEEEEC--CcHHHHHHHHHHC------CCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhC
Confidence 478999999 5788999999999 9999999876 667777767899999999999998766666666664 56
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCce-EEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF-TAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++||| |||||+|+.++||++.++..++..+.+++.. ...+ ...++|++.+..++++..++.+++
T Consensus 263 ~~PilGIClGhQlLa~a~Gg~v~k~~~Gh~g~n~pv~~-------------~~~v~itsq~H~~~v~~~sv~~~~~~vt~ 329 (382)
T CHL00197 263 NIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPSGL-------------NQQVEITSQNHGFAVNLESLAKNKFYITH 329 (382)
T ss_pred CCCEEEEcHHHHHHHHHhCCEEeccCCCCCCCCEecCC-------------CCceEEeecchheEeeccccCCCCcEEEE
Confidence 89999 9999999999999999987444333344321 1222 334799999987766544788988
Q ss_pred Ec-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 168 WT-EDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 168 ~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
.+ +++.+++++++++| +||+|||||+...+.+
T Consensus 330 ~~~nDgtvegi~h~~~p-i~gVQFHPE~~~gp~d 362 (382)
T CHL00197 330 FNLNDGTVAGISHSPKP-YFSVQYHPEASPGPHD 362 (382)
T ss_pred EECCCCCEEEEEECCCC-cEEEeeCCCCCCCCCC
Confidence 86 68889999999998 9999999999887764
|
|
| >PRK05665 amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=209.80 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=129.0
Q ss_pred CcEEEEeCCc----------hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcchH
Q 037843 13 NPIVVIDNYD----------SFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESGIS 81 (203)
Q Consensus 13 ~~i~iid~~~----------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~~~ 81 (203)
+||+||..+. +|..++.+++... ....++.++...... +.++. ++|||||+||+.++++...+
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~----~~~~~~~~~~~~~~~~p~~~~--~~dgiiitGs~~~v~~~~pw 76 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQ----PIAAEFVVYNVVQGDYPADDE--KFDAYLVTGSKADSFGTDPW 76 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhC----CCCceEEEEeccCCCCCCCcc--cCCEEEECCCCCCccccchH
Confidence 3599996654 2334455555554 112344544322111 22222 68999999999998875543
Q ss_pred ----HHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceee
Q 037843 82 ----FRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIE 154 (203)
Q Consensus 82 ----~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~ 154 (203)
.++|++ +.+++|+| |||||+||.++||+|.+.+.+++.|...+.++.. .++|.++++.+.++++|++.|.
T Consensus 77 i~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~~~~~~---~~~~~~~~~~~~~~~~H~D~V~ 153 (240)
T PRK05665 77 IQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAAH---APWMSPAVTELTLLISHQDQVT 153 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEEEecCC---CccccCCCCceEEEEEcCCeee
Confidence 455666 46789999 9999999999999999987667778777776543 5689888899999999999998
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. +|++++++|+|+.|.+|+++..+ ++||+|||||++..
T Consensus 154 ~---LP~ga~~La~s~~~~~q~~~~~~--~~~g~QfHPE~~~~ 191 (240)
T PRK05665 154 A---LPEGATVIASSDFCPFAAYHIGD--QVLCFQGHPEFVHD 191 (240)
T ss_pred e---CCCCcEEEEeCCCCcEEEEEeCC--CEEEEecCCcCcHH
Confidence 7 78999999999999999999876 59999999998763
|
|
| >PRK12838 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=218.97 Aligned_cols=167 Identities=27% Similarity=0.415 Sum_probs=134.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
.++|++||++ +..++.++|++. |+.+.+++++ .+.+++...++|||||+|||++|.+.....+.++++...
T Consensus 167 ~~~V~viD~G--~k~ni~~~L~~~------G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~ 237 (354)
T PRK12838 167 GKHVALIDFG--YKKSILRSLSKR------GCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS 237 (354)
T ss_pred CCEEEEECCC--HHHHHHHHHHHC------CCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC
Confidence 4789999995 789999999998 9999999986 456777655799999999999987766666777774333
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
+|+| |+|||+|+.++||++.+++.++..+.+++...... ..+.+.++|+++|..+++++.++.+++.+
T Consensus 238 ~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G~~hpV~~~~~~----------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~ 307 (354)
T PRK12838 238 YPILGICLGHQLIALALGADTEKLPFGHRGANHPVIDLTTG----------RVWMTSQNHGYVVDEDSLDGTPLSVRFFN 307 (354)
T ss_pred CCEEEECHHHHHHHHHhCCEEecCCCCccCCceEEEECCCC----------eEEEeccchheEecccccCCCCcEEEEEE
Confidence 9999 99999999999999999875444444777764321 12456689999998766554568999986
Q ss_pred -CCCcEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 170 -EDGLIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 170 -~~~~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
+++.++|++++++| +||+|||||+...+
T Consensus 308 ~~Dg~Veai~~~~~p-i~gVQfHPE~~~gp 336 (354)
T PRK12838 308 VNDGSIEGLRHKKKP-VLSVQFHPEAHPGP 336 (354)
T ss_pred CCCCeEEEEEECCCC-EEEEEeCCCCCCCC
Confidence 68899999999998 99999999998765
|
|
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=214.83 Aligned_cols=168 Identities=26% Similarity=0.424 Sum_probs=142.2
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-C
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-G 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~ 89 (203)
...+|++||++. ..++.|.|.+. |++++++|++ .+.+++...+||||+||.|||+|......++.|+++ +
T Consensus 178 ~~~~Vv~iD~Gv--K~nIlr~L~~r------g~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~ 248 (368)
T COG0505 178 PGKHVVVIDFGV--KRNILRELVKR------GCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLG 248 (368)
T ss_pred CCcEEEEEEcCc--cHHHHHHHHHC------CCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhc
Confidence 357899999975 88999999898 9999999986 789999888999999999999998777778888885 5
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
..+|+| |||||||+.|+|++..++..+++.+++++.-...+ ......++|+|+|+.+++...+ +++-
T Consensus 249 ~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV~dl~tg----------rv~ITSQNHGyaVd~~s~~~~~-~vth 317 (368)
T COG0505 249 TKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLDTG----------RVYITSQNHGYAVDEDSLVETL-KVTH 317 (368)
T ss_pred cCCCeEEEcHHHHHHHHhcCCceeecccCCCCCCcCcccccCC----------eEEEEecCCceecChhhcCCCc-eeEE
Confidence 667999 99999999999999999998877777887654321 2355678999999987665333 7778
Q ss_pred Ec-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 168 WT-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 168 ~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
.+ .|+.+++++++++| +++||||||.+.-|.
T Consensus 318 ~nlnDgTvEGi~h~~~P-~fSVQ~HPEAsPGPh 349 (368)
T COG0505 318 VNLNDGTVEGIRHKDLP-AFSVQYHPEASPGPH 349 (368)
T ss_pred EeCCCCCccceecCCCc-eEEEccCCCCCCCCc
Confidence 88 68999999999999 999999999987653
|
|
| >TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=233.50 Aligned_cols=178 Identities=26% Similarity=0.436 Sum_probs=134.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcch--HHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESGI--SFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~~--~~~~i~~ 87 (203)
.+++|||||++|||++|++++|++.. ..++.+.+++++....+.+.. ..+|+|||+||||+|.+... +...+.+
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~---g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~ 80 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQT---DISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWE 80 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhc---CCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHH
Confidence 45799999999999999999999872 113667888876433322222 36899999999999975443 2222222
Q ss_pred h--CCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCC
Q 037843 88 L--GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDE 162 (203)
Q Consensus 88 ~--~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~ 162 (203)
. ..++||| |+|||+|+.++||+|.+.+ ..++|. ..+.+.. ..+|.+++. +.++++|++.+..+ .++.
T Consensus 81 ~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~-~~~hG~~~~v~~~~----~~lf~gl~~-~~v~~~Hs~~v~~~--~~~~ 152 (742)
T TIGR01823 81 LANLDEVPVLGICLGFQSLCLAQGADISRLP-TPKHGQVYEMHTND----AAIFCGLFS-VKSTRYHSLYANPE--GIDT 152 (742)
T ss_pred hcccCCCcEEEEchhhHHHHhhcCCEEEECC-CCCcCeEEEEEECC----ccccCCCCC-CceeEEEEEEccCC--CCCc
Confidence 2 3469999 9999999999999999987 567887 5665543 468999975 88999999998652 2234
Q ss_pred --eEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 163 --LEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 163 --~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+.+++.+++ +.++|++++++| +||+|||||+..++.|
T Consensus 153 l~~~~~a~~~~~~~i~ai~h~~~p-i~GVQFHPE~~~s~~g 192 (742)
T TIGR01823 153 LLPLCLTEDEEGIILMSAQTKKKP-WFGVQYHPESCCSELG 192 (742)
T ss_pred ceEEEEEEcCCCCeEEEEEEcCCc-eEEEEeCcccCCCCcc
Confidence 566666654 479999999998 9999999999988876
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. |
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=204.86 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=134.7
Q ss_pred CcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCc----ch-----
Q 037843 13 NPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQES----GI----- 80 (203)
Q Consensus 13 ~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~----~~----- 80 (203)
+||+||.+...- ...+..++++. |..+.++...... .+. ..++|+|||+||++++.+. ..
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~------g~~~~~~~~~~g~--~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~ 72 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENR------GYDISYSRVYAGE--ALPENADGFDLLIVMGGPQSPRTTREECPYFDSKA 72 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHC------CCeEEEEEccCCC--CCCCCccccCEEEECCCCCChhhccccccccchHH
Confidence 368888765422 45677888887 8888876643211 121 1268999999999886531 11
Q ss_pred HHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCC
Q 037843 81 SFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDS 157 (203)
Q Consensus 81 ~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~ 157 (203)
..++|++ +..++|+| |+|+|+|+.++||+|.+.+ ..+.|+.++.++..+..+++|.++++.+.++++|++.+.
T Consensus 73 ~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~--- 148 (235)
T PRK08250 73 EQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSP-EKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWHNDMPG--- 148 (235)
T ss_pred HHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCC-CCceeEEEEEEccccccCchhhcCCCCcEEEEEecceec---
Confidence 2456666 46789999 9999999999999999987 478999999998887778899999999999999999864
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 158 FRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 158 l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+|++++++|+|+.|.+|+++..+ ++||+|||||.+.
T Consensus 149 -lP~~a~~LA~s~~~~~qa~~~~~--~~~g~QfHPE~~~ 184 (235)
T PRK08250 149 -LTDQAKVLATSEGCPRQIVQYSN--LVYGFQCHMEFTV 184 (235)
T ss_pred -CCCCCEEEECCCCCCceEEEeCC--CEEEEeecCcCCH
Confidence 67999999999999999999876 4999999999874
|
|
| >cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=196.55 Aligned_cols=167 Identities=23% Similarity=0.271 Sum_probs=134.1
Q ss_pred cEEEEeCCchH-HHHHHHHHHHhhhhhcCC---ceEEEEeCCcccH-HHHhccCCCEEEECCCCCCC-CCcch----HHH
Q 037843 14 PIVVIDNYDSF-TYNLCQYMGELELELSQG---YHFEVYRNDELTV-AELKRKKPRGVVISPGPGAP-QESGI----SFR 83 (203)
Q Consensus 14 ~i~iid~~~~~-~~~l~~~l~~~~~~~~~g---~~~~v~~~~~~~~-~~l~~~~~dgiil~GG~~~~-~~~~~----~~~ 83 (203)
||+||++.... ..++.+++++. | +++++++...... .++ .++|||||+||+.++ .+... ..+
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~------g~~~~~~~~~~~~~~~~~~~~--~~~dgvil~Gg~~~~~~~~~~~~~~~~~ 72 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREA------GAETIEIDVVDVYAGELLPDL--DDYDGLVILGGPMSVDEDDYPWLKKLKE 72 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhc------CCCCceEEEEecCCCCCCCCc--ccCCEEEECCCCccCCccCChHHHHHHH
Confidence 57888766533 46788899888 7 6888877653222 222 278999999999887 33322 345
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
+++. ..+++|+| |+|||+|+.++||+|.+...+++.|+.++.++..+..+++|++++..+.++++|++.|.. +|
T Consensus 73 ~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~---lp 149 (188)
T cd01741 73 LIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVE---LP 149 (188)
T ss_pred HHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCcceeEEEEEEeccccccCchhhcCCCcceEEEEeccChhh---CC
Confidence 5665 46789999 999999999999999998755577888998887666678899998899999999999987 67
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCC
Q 037843 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193 (203)
Q Consensus 161 ~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE 193 (203)
++++++|+++++.+++++.++ ++||+|||||
T Consensus 150 ~~~~~la~~~~~~v~~~~~~~--~~~g~QfHPE 180 (188)
T cd01741 150 PGAVLLASSEACPNQAFRYGD--RALGLQFHPE 180 (188)
T ss_pred CCCEEeecCCCCCcceEEecC--CEEEEccCch
Confidence 999999999999999999874 5999999999
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=198.19 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=125.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFR 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~ 83 (203)
|+||+|||++.++..++.++|+++ |+ ++.++ .+++++. ++|+|||+|+.....+. +....
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~------g~~~~v~~~----~~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~ 68 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERA------GAGADVVVT----ADPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEA 68 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHc------CCCccEEEE----CCHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHH
Confidence 468999999999999999999999 88 44443 3466775 68999998864332211 11223
Q ss_pred HHHHh-CCCCcee--ehhHHHHHHH------------hCCeecccc------ccccccceeEEEcccccccccccCCCCc
Q 037843 84 TVLEL-GPTMPLF--CMGLKCIGEA------------LEGRLYVLL------LVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 84 ~i~~~-~~~~Pil--ClG~Qlla~a------------~gg~v~~~~------~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
+++.. ..++|+| |+|||+|+.+ ++|+|.+.. ..++.||..+.... ++++|+++++.
T Consensus 69 ~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~---~~~lf~~~~~~ 145 (209)
T PRK13146 69 VIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTR---DHPLFAGIPDG 145 (209)
T ss_pred HHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCC---CChhccCCCCC
Confidence 44443 5789999 9999999999 889998861 12467888887654 37899999999
Q ss_pred eEEeecccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+.++++|+|.+.. ++ +..++|+++.+ .++++..+. + +||+|||||++ ++.|
T Consensus 146 ~~v~~~Hs~~v~~---~~-~~~~la~s~~~~~~~a~~~~~-~-i~GvQFHPE~s-~~~G 197 (209)
T PRK13146 146 ARFYFVHSYYAQP---AN-PADVVAWTDYGGPFTAAVARD-N-LFATQFHPEKS-QDAG 197 (209)
T ss_pred CEEEEEeEEEEEc---CC-CCcEEEEEcCCCEEEEEEecC-C-EEEEEcCCccc-HHHH
Confidence 9999999999976 43 56888988765 577877653 4 99999999998 3444
|
|
| >PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=190.72 Aligned_cols=162 Identities=24% Similarity=0.286 Sum_probs=119.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i~ 86 (203)
++|+|||+++++..++.++|+++ |+++.+++. .+++. ++|+||| ||+|.+.+.. .+.+.++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~------g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~ 67 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERL------GYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIK 67 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHC------CCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHH
Confidence 47999999999999999999999 999988753 45565 5799999 6667655432 1234444
Q ss_pred HhCCCCcee--ehhHHHHHHHhC------------Ceecccc----ccccccceeEEEcccccccccccCCCCceEEeec
Q 037843 87 ELGPTMPLF--CMGLKCIGEALE------------GRLYVLL----LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY 148 (203)
Q Consensus 87 ~~~~~~Pil--ClG~Qlla~a~g------------g~v~~~~----~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~ 148 (203)
+ .++||| |+|||+|+.+++ +++.+.. ..++.||+.|....+ +++|+++++.+.++++
T Consensus 68 ~--~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~~---~~l~~~l~~~~~v~~~ 142 (196)
T PRK13170 68 A--CTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAG---HPLFQGIEDGSYFYFV 142 (196)
T ss_pred H--cCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCCC---ChhhhCCCcCCEEEEE
Confidence 4 369999 999999999973 3454432 135688888877543 6799999999999999
Q ss_pred ccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 149 HGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 149 H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
|+|.+. ++..++|+++.+ .++++.. ..+ +||+|||||++. +.|.
T Consensus 143 Hs~~lp------~~~~~la~s~~~~~~~~~~~-~~~-i~G~QFHPE~~~-~~G~ 187 (196)
T PRK13170 143 HSYAMP------VNEYTIAQCNYGEPFSAAIQ-KDN-FFGVQFHPERSG-AAGA 187 (196)
T ss_pred CeeecC------CCCcEEEEecCCCeEEEEEE-cCC-EEEEECCCCCcc-cccH
Confidence 998762 456788888754 4444443 334 999999999995 5553
|
|
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=186.96 Aligned_cols=164 Identities=22% Similarity=0.278 Sum_probs=123.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch------HHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI------SFRTV 85 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~------~~~~i 85 (203)
|++|+|||++.++.+++.++++.+ |+++.+. .+++++. +.|+||| ||.|...+... +.+.|
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~------G~~~~vs----~d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i 67 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERL------GAEVVVS----RDPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAI 67 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHc------CCeeEEe----cCHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHH
Confidence 578999999999999999999999 9888774 3567777 4699999 77887655432 35556
Q ss_pred HH-hCCCCcee--ehhHHHHHHH------------hCCeecccccc----ccccceeEEEcccccccccccCCCCceEEe
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLLV----SCMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~~----~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
++ ...++|+| |+|||+|.+. +.|+|.++... +..||..+.... .++||+++++.-.+|
T Consensus 68 ~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~---~~~l~~gi~~~~~~Y 144 (204)
T COG0118 68 KEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVR---GHPLFKGIPDGAYFY 144 (204)
T ss_pred HHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccC---CChhhcCCCCCCEEE
Confidence 65 45669999 9999999874 23677776532 457898887762 389999998878899
Q ss_pred ecccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 147 RYHGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 147 ~~H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+.|||.+.+ . +.-.++++++.+ .+-|...++ +++|+|||||++.+
T Consensus 145 FVHSY~~~~---~-~~~~v~~~~~YG~~f~AaV~k~--N~~g~QFHPEKSg~ 190 (204)
T COG0118 145 FVHSYYVPP---G-NPETVVATTDYGEPFPAAVAKD--NVFGTQFHPEKSGK 190 (204)
T ss_pred EEEEEeecC---C-CCceEEEeccCCCeeEEEEEeC--CEEEEecCcccchH
Confidence 999999974 2 334456666544 444444455 59999999999864
|
|
| >cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=192.51 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=124.3
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH-
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRTVLE- 87 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~i~~- 87 (203)
|+|||+++++...+.++|+++ |+++++++. .+++. ++|+|||+|| +.+.+. ....+.+++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~------g~~v~v~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~ 67 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERL------GAEVIITSD----PEEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEA 67 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHC------CCeEEEEcC----hHHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHH
Confidence 689999999999999999999 999998764 23454 5899999554 443321 123556666
Q ss_pred hCCCCcee--ehhHHHHHHH------------hCCeeccccc-----cccccceeEEEcccccccccccCCCCceEEeec
Q 037843 88 LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY 148 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~ 148 (203)
.++++||| |+|||+|+.+ +++++.+.+. .+++|+..+..... +++|+++++.+.++++
T Consensus 68 ~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~---~~lf~~l~~~~~v~~~ 144 (198)
T cd01748 68 IASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKE---SPLFKGIPDGSYFYFV 144 (198)
T ss_pred HHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCC---ChhhhCCCCCCeEEEE
Confidence 46789999 9999999998 7888888652 14778877776543 6799999999999999
Q ss_pred ccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 149 HGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 149 H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|++.+.. + +.+.++|+++++ .++++.. +.+ +||+|||||++. +.|
T Consensus 145 Hs~~v~~---~-~~~~~la~s~~~~~~~~~~~-~~~-i~GvQFHPE~~~-~~g 190 (198)
T cd01748 145 HSYYAPP---D-DPDYILATTDYGGKFPAAVE-KDN-IFGTQFHPEKSG-KAG 190 (198)
T ss_pred eEEEEec---C-CcceEEEEecCCCeEEEEEE-cCC-EEEEECCCcccc-HhH
Confidence 9999975 4 567888988664 4555544 445 999999999984 444
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=190.95 Aligned_cols=168 Identities=18% Similarity=0.183 Sum_probs=121.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTV 85 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i 85 (203)
|++|.|||++.++..++.++++.+ |+++.+++. .+++. ++|+||+ ||+|++.... .+.+.+
T Consensus 1 ~~~v~iid~~~GN~~sl~~al~~~------g~~v~vv~~----~~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i 67 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQA------GQQPCIINS----ESELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPI 67 (210)
T ss_pred CcEEEEEEcCCccHHHHHHHHHHc------CCcEEEEcC----HHHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHH
Confidence 457999999999999999999999 999988753 34554 5799887 6667754221 122344
Q ss_pred HH-hCCCCcee--ehhHHHHHHH-----------hCCeecccc-----ccccccceeEEEcccccc---cccccCCCCce
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEA-----------LEGRLYVLL-----LVSCMGKALVYYNEKEEA---DGLLAGLSNPF 143 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a-----------~gg~v~~~~-----~~~~~g~~~i~~~~~~~~---~~lf~~~~~~~ 143 (203)
++ +.+++|+| |+|||+|++. +.|+|.+.. .-++.||..+..+.+... ++||+++++.+
T Consensus 68 ~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~ 147 (210)
T CHL00188 68 KKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNP 147 (210)
T ss_pred HHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCC
Confidence 44 56789999 9999999986 456666652 124568888877654221 46999999999
Q ss_pred EEeecccceeecCCCCCCCeEEEEEc----CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 144 TAGRYHGLVIEKDSFRSDELEVTAWT----EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 144 ~~~~~H~~~v~~~~l~~~~~~~~a~s----~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
.++++|+|.+.+ ++...++.+ .++.+++++.. + +||+|||||++ ++.|.
T Consensus 148 ~v~~~HS~~v~p-----~~~~~l~~t~~~~~~~~v~a~~~~--~-i~GvQFHPE~s-~~~G~ 200 (210)
T CHL00188 148 WAYFVHSYGVMP-----KSQACATTTTFYGKQQMVAAIEYD--N-IFAMQFHPEKS-GEFGL 200 (210)
T ss_pred EEEEeCccEecC-----CCCceEEEEEecCCcceEEEEecC--C-EEEEecCCccc-cHhHH
Confidence 999999999853 233334433 24569999863 4 99999999998 66653
|
|
| >PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=191.61 Aligned_cols=132 Identities=29% Similarity=0.333 Sum_probs=99.7
Q ss_pred CCCEEEECCCCCCCC--------Ccch--------HHHHHHH-hCCCCcee--ehhHHHHHHHhCCeecccc----cccc
Q 037843 62 KPRGVVISPGPGAPQ--------ESGI--------SFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLL----LVSC 118 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--------~~~~--------~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~----~~~~ 118 (203)
.+|||||+||+.+.. .... ..++++. +++++||| |+|||+|+.++||++.+.. ....
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~ 140 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLE 140 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccc
Confidence 589999999986542 1111 1455665 57889999 9999999999999999752 0001
Q ss_pred cc-------------ceeEEEcccccccccccCCC---CceEEeecccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCC
Q 037843 119 MG-------------KALVYYNEKEEADGLLAGLS---NPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKY 182 (203)
Q Consensus 119 ~g-------------~~~i~~~~~~~~~~lf~~~~---~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~ 182 (203)
|+ .+.|.++. ++++..+. ..+.++++|+++|.. ++++++++|+++++.+||+++.++
T Consensus 141 h~~~~~~~~~~~~~~~h~v~~~~----~s~l~~i~~~~~~~~Vns~H~q~V~~---l~~gl~v~A~s~dg~ieAie~~~~ 213 (254)
T PRK11366 141 HREDPELPVEQQYAPSHEVQVEE----GGLLSALLPECSNFWVNSLHGQGAKV---VSPRLRVEARSPDGLVEAVSVINH 213 (254)
T ss_pred cccCCccccccccCCceEEEECC----CCcHHHhcCCCceEEeehHHHHHHhh---cccceEEEEEcCCCcEEEEEeCCC
Confidence 11 24455543 33444432 467899999999987 789999999999999999999998
Q ss_pred CcEEEEcCCCCCCCCCCC
Q 037843 183 KHLHGVQFHPESILTSEG 200 (203)
Q Consensus 183 ~~i~gvQfHPE~~~~~~g 200 (203)
++++|||||||+..++++
T Consensus 214 ~~~~GVQwHPE~~~~~~~ 231 (254)
T PRK11366 214 PFALGVQWHPEWNSSEYA 231 (254)
T ss_pred CCEEEEEeCCCcCCCCCc
Confidence 867999999999988776
|
|
| >PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=187.78 Aligned_cols=160 Identities=23% Similarity=0.227 Sum_probs=119.4
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~i~~ 87 (203)
||+|||+++++..++.++++.+ |++++++. +.+++. ++|+||++|| +++... ..+.+.+++
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~------g~~v~~~~----~~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~ 67 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRL------GVEAVVSS----DPEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKE 67 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHC------CCcEEEEc----ChHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHH
Confidence 4999999999999999999999 99988773 345665 5899999554 443211 112344555
Q ss_pred -hCCCCcee--ehhHHHHHHH-----------hCCeeccccc----cccccceeEEEcccccccccccCCCCceEEeecc
Q 037843 88 -LGPTMPLF--CMGLKCIGEA-----------LEGRLYVLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYH 149 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a-----------~gg~v~~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H 149 (203)
...++|+| |+|||+|+.+ +++++.+.+. .++.|+..+.... .++||+++++.+.++++|
T Consensus 68 ~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~---~~~lf~~l~~~~~~~~~H 144 (199)
T PRK13181 68 HVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLK---ESPLFKGIEEGSYFYFVH 144 (199)
T ss_pred HHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCC---CChhHcCCCCCCEEEEeC
Confidence 46789999 9999999999 7788887642 2467887776543 378999999889999999
Q ss_pred cceeecCCCCCCCeEEEEEcCCC-cE-EEEEeCCCCcEEEEcCCCCCCC
Q 037843 150 GLVIEKDSFRSDELEVTAWTEDG-LI-MAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 150 ~~~v~~~~l~~~~~~~~a~s~~~-~v-~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++.+.. + +.+.++|+++.+ .+ ++++ . .+ +||+|||||++.
T Consensus 145 s~~v~~---~-~~~~~lA~s~~~~~~~~~~~-~-~~-i~GvQFHPE~~~ 186 (199)
T PRK13181 145 SYYVPC---E-DPEDVLATTEYGVPFCSAVA-K-DN-IYAVQFHPEKSG 186 (199)
T ss_pred eeEecc---C-CcccEEEEEcCCCEEEEEEE-C-CC-EEEEECCCccCC
Confidence 999865 4 345688988754 33 3443 3 34 999999999873
|
|
| >PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=182.62 Aligned_cols=161 Identities=25% Similarity=0.291 Sum_probs=124.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~i~~ 87 (203)
+|+|||++.++..++.++|++. |+.+.+++. .+++. ++|+|||+|| +.+.+. ..+.++|++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~------G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~ 67 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERL------GAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKE 67 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHC------CCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHH
Confidence 5899999999999999999999 999988753 35555 6899999775 332221 123455666
Q ss_pred -hCCCCcee--ehhHHHHHHH------------hCCeeccccc-----cccccceeEEEcccccccccccCCCCceEEee
Q 037843 88 -LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGR 147 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~ 147 (203)
..+++|+| |+|+|+|+.+ +++++.+.+. .++.|++.+..+. .+++|++++..+.++.
T Consensus 68 ~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~---~~~l~~~l~~~~~v~~ 144 (205)
T PRK13141 68 AVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKK---ESPLLKGIPDGAYVYF 144 (205)
T ss_pred HHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCC---CChhhhCCCCCCEEEE
Confidence 46789999 9999999997 6788877641 1345777776654 3789999998889999
Q ss_pred cccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 148 YHGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 148 ~H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+|++.+.. ++++.++|+++++ .++++.... ++||+|||||++.
T Consensus 145 ~Hs~~v~~----~~~~~v~a~~~~~~~~~a~~~~~--~i~GvQfHPE~~~ 188 (205)
T PRK13141 145 VHSYYADP----CDEEYVAATTDYGVEFPAAVGKD--NVFGAQFHPEKSG 188 (205)
T ss_pred ECeeEecc----CCcCeEEEEEeCCcEEEEEEecC--CEEEEeCCCccch
Confidence 99999964 5778999988765 788887654 4999999999875
|
|
| >PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=180.32 Aligned_cols=159 Identities=20% Similarity=0.292 Sum_probs=116.2
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI------SFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~------~~~~i~~ 87 (203)
||+|||++.++..++.++|+.+ |+++.+++. .+++. ++|+||| ||++++.+... +...+++
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~------g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~ 67 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKI------GAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKE 67 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHC------CCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHH
Confidence 4899999999999999999999 998877653 34565 5799999 66677654321 1333444
Q ss_pred --hCCCCcee--ehhHHHHHHH-h-----------CCeeccccc-----cccccceeEEEcccccccccccCCCCceEEe
Q 037843 88 --LGPTMPLF--CMGLKCIGEA-L-----------EGRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 88 --~~~~~Pil--ClG~Qlla~a-~-----------gg~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
++.++|+| |+|||+|+.+ . +++|.+... .+..|++.+..... +++|+++++++.++
T Consensus 68 ~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~~---~~l~~~l~~~~~~~ 144 (201)
T PRK13152 68 QVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQ---SPLYQGIPEKSDFY 144 (201)
T ss_pred HHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECCC---ChhhhCCCCCCeEE
Confidence 36789999 9999999997 1 256655321 13457778876543 67999998889999
Q ss_pred ecccceeecCCCCCCCeEEEEEcCCC--cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 147 RYHGLVIEKDSFRSDELEVTAWTEDG--LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 147 ~~H~~~v~~~~l~~~~~~~~a~s~~~--~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++|++.+.. ++ ..+++.++++ .+++++. . ++||+|||||++.
T Consensus 145 ~vHS~~v~~---~~--~~v~a~~~~g~~~~~a~~~--~-~i~GvQFHPE~~~ 188 (201)
T PRK13152 145 FVHSFYVKC---KD--EFVSAKAQYGHKFVASLQK--D-NIFATQFHPEKSQ 188 (201)
T ss_pred EEcccEeec---CC--CcEEEEECCCCEEEEEEec--C-CEEEEeCCCeecC
Confidence 999999975 32 4566766554 5567663 2 4999999999984
|
|
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=198.59 Aligned_cols=174 Identities=24% Similarity=0.377 Sum_probs=149.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG--ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~--~~~~~i~~~~ 89 (203)
..+|+|+|++++|...+.|.+|++ .+..+++|.. .+...+....|-||||||||.++++.+ .+...+.+++
T Consensus 16 ~d~i~iLD~GaQY~~~I~RrvRel------~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~ 88 (552)
T KOG1622|consen 16 FDTILILDFGAQYGKVIDRRVREL------NVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELG 88 (552)
T ss_pred CceEEEEeccchhhHHHHHHHHHH------hhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhccC
Confidence 467999999999999999999999 8888888864 556677767899999999999988654 3556677766
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCce--EEeecccceeecCCCCCCCeEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF--TAGRYHGLVIEKDSFRSDELEV 165 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~--~~~~~H~~~v~~~~l~~~~~~~ 165 (203)
+|+| |+|||+|+..+||.|.+-. ..+.|...|..... ..||+++.... .++..|++.+.. ++.++++
T Consensus 89 --vpvLGICYGmQ~i~~~~Gg~V~~~~-~RE~G~~eI~v~~~---~~lF~~~~~~~~~~VlltHgdsl~~---v~~g~kv 159 (552)
T KOG1622|consen 89 --VPVLGICYGMQLINKLNGGTVVKGM-VREDGEDEIEVDDS---VDLFSGLHKTEFMTVLLTHGDSLSK---VPEGFKV 159 (552)
T ss_pred --CcceeehhHHHHHHHHhCCcccccc-ccCCCCceEEcCch---hhhhhhhcccceeeeeeccccchhh---cccccee
Confidence 9999 9999999999999999876 67888888877654 55899887544 488999999998 7899999
Q ss_pred EEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCCC
Q 037843 166 TAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202 (203)
Q Consensus 166 ~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~ 202 (203)
.|+|.+.++.++.+..++ +||+|||||.++++.|.+
T Consensus 160 ~a~s~n~~va~i~~e~kk-iyglqfhpEV~~t~~g~~ 195 (552)
T KOG1622|consen 160 VAFSGNKPVAGILNELKK-IYGLQFHPEVTLTPNGKE 195 (552)
T ss_pred EEeecCcceeeehhhhhh-hhcCCCCCcccccCchhH
Confidence 999988889999988887 999999999999998864
|
|
| >TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=178.95 Aligned_cols=159 Identities=23% Similarity=0.193 Sum_probs=116.4
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-h-----HHHHHHH-
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-I-----SFRTVLE- 87 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~-----~~~~i~~- 87 (203)
|+|||++.++...+.++++.+ |+++++++.+ +++. ++|+||++| ++++.+.. . ...++++
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~------g~~v~v~~~~----~~l~--~~d~lii~G-~~~~~~~~~~l~~~~~~~l~~~~ 67 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRV------GAEPVVVKDS----KEAE--LADKLILPG-VGAFGAAMARLRENGLDLFVELV 67 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHC------CCcEEEEcCH----HHhc--cCCEEEECC-CCCHHHHHHHHHHcCcHHHHHHH
Confidence 689999999999999999999 9999988742 3444 589999955 44433211 0 2233354
Q ss_pred hCCCCcee--ehhHHHHHHH------------hCCeecccc--ccccccceeEEEcccccccccccCCCCceEEeecccc
Q 037843 88 LGPTMPLF--CMGLKCIGEA------------LEGRLYVLL--LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGL 151 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~--~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~ 151 (203)
++.++|+| |+|||+|+.+ +|++|.+.+ ...+.|+..+.... .++||+++++.+.++++|++
T Consensus 68 ~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~---~~~l~~~l~~~~~v~~~Hs~ 144 (196)
T TIGR01855 68 VRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVK---ESPLLNGIDEGAYFYFVHSY 144 (196)
T ss_pred HhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCC---CChHHhCCCCCCEEEEECee
Confidence 46789999 9999999998 688888764 13467776665543 37899999999999999999
Q ss_pred eeecCCCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 152 VIEKDSFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 152 ~v~~~~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.+.. ++ +. +++.+++ +..+++.. ..+ +||+|||||++.
T Consensus 145 ~v~~---~~-~~-~~a~~~~g~~~~~~~~-~~~-i~GvQFHPE~~~ 183 (196)
T TIGR01855 145 YAVC---EE-EA-VLAYADYGEKFPAAVQ-KGN-IFGTQFHPEKSG 183 (196)
T ss_pred EecC---CC-Cc-EEEEEcCCcEEEEEEe-cCC-EEEEECCCccCc
Confidence 9975 43 54 5565554 45555544 334 999999999874
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. |
| >cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=185.41 Aligned_cols=168 Identities=19% Similarity=0.254 Sum_probs=119.6
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCCcc--h-HHHHHHH----h--CCCCce
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQESG--I-SFRTVLE----L--GPTMPL 94 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~~~--~-~~~~i~~----~--~~~~Pi 94 (203)
.+.++++++. |+.+.+++.+ .+.+++.. ..+||||++||+.+....+ . ...+++. . +..+||
T Consensus 23 ~~Yv~~l~~a------G~~vvpi~~~-~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv 95 (273)
T cd01747 23 ASYVKFLESA------GARVVPIWIN-ESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPV 95 (273)
T ss_pred HHHHHHHHHC------CCeEEEEEeC-CcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcE
Confidence 3466677776 9998877765 23344332 2689999999987664222 1 1222222 1 234999
Q ss_pred e--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCC--------ceEEeecccceeecCCCC----
Q 037843 95 F--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSN--------PFTAGRYHGLVIEKDSFR---- 159 (203)
Q Consensus 95 l--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~--------~~~~~~~H~~~v~~~~l~---- 159 (203)
| |+|||+|+.++||++........++. .++.++....+++||++++. ...++++|+|++.+++++
T Consensus 96 ~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~ 175 (273)
T cd01747 96 WGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGL 175 (273)
T ss_pred EEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccc
Confidence 9 99999999999997554222334555 88888877677889999864 346789999999765443
Q ss_pred -CCCeEEEEEcCC--C--cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 160 -SDELEVTAWTED--G--LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 160 -~~~~~~~a~s~~--~--~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
...+.+++++.+ + .+++++++++| +||+|||||++.+||+.
T Consensus 176 l~~~~~vla~~~d~~g~~fis~ie~~~~p-i~gvQFHPEks~few~~ 221 (273)
T cd01747 176 LSDFFNVLTTNDDWNGVEFISTVEAYKYP-IYGVQWHPEKNAFEWKK 221 (273)
T ss_pred cccceEEEEEEecCCCceEEEEEEecCCc-eEEEecCCCcccccccc
Confidence 245788898744 3 47999999998 99999999999999986
|
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=177.80 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=117.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i~~ 87 (203)
||+|||++.++..++.++++.. +.++..+ .+++++. ++|+||++|+ +++.+.. .+...+++
T Consensus 1 ~i~iidyg~gNl~s~~~al~~~------~~~~~~~----~~~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~ 67 (210)
T PRK14004 1 MIAILDYGMGNIHSCLKAVSLY------TKDFVFT----SDPETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDK 67 (210)
T ss_pred CEEEEECCCchHHHHHHHHHHc------CCeEEEE----CCHHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHH
Confidence 3899999999999999999998 8877665 3456665 6799997555 5543321 13444444
Q ss_pred -hCCCCcee--ehhHHHHHHHhC------------------Ceecccc----ccccccceeEEEcccccccccccCCCCc
Q 037843 88 -LGPTMPLF--CMGLKCIGEALE------------------GRLYVLL----LVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~g------------------g~v~~~~----~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
..+++|+| |+|||+|+.+++ ++|.+++ .-++.||..+.... ...+++|+++++.
T Consensus 68 ~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~-~~~~~lf~~l~~~ 146 (210)
T PRK14004 68 HVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRR-KDKSKLLKGIGDQ 146 (210)
T ss_pred HHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceecc-CCCCccccCCCCC
Confidence 56889999 999999999764 5555432 13567887777652 2346799999999
Q ss_pred eEEeecccceeecCCCCCCCeEEEEEcCC-C-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSFRSDELEVTAWTED-G-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+.+++||+|.+.. +..+.+++.+.. + .++++..++ + +||+|||||++. +.|.
T Consensus 147 ~~v~~~HS~~~~~----~~~l~~sa~~~~~g~~~~a~~~~~-~-i~GvQFHPE~s~-~~G~ 200 (210)
T PRK14004 147 SFFYFIHSYRPTG----AEGNAITGLCDYYQEKFPAVVEKE-N-IFGTQFHPEKSH-THGL 200 (210)
T ss_pred CEEEEeceeecCC----CCcceEEEeeeECCEEEEEEEecC-C-EEEEeCCcccCc-hhHH
Confidence 9999999996532 234455555543 3 245666443 4 999999999998 4653
|
|
| >cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=178.58 Aligned_cols=141 Identities=21% Similarity=0.322 Sum_probs=109.2
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCC--------------c--c-hH
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQE--------------S--G-IS 81 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~--------------~--~-~~ 81 (203)
++++.+++.++++.+ |+.+.++++. .+.+++.. .++|||||+||++...+ . + ..
T Consensus 17 ~~~~~~~~~~~l~~~------G~~~~iv~~~-~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~ 89 (189)
T cd01745 17 RDYLNQYYVDAVRKA------GGLPVLLPPV-DDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFE 89 (189)
T ss_pred HHHHHHHHHHHHHHC------CCEEEEeCCC-CChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHH
Confidence 466788899999998 9998888765 23333321 26899999999865321 0 0 12
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCC
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF 158 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l 158 (203)
.++++. ++.++||| |+|||+|+.++||++.+.. .++++|++.|..
T Consensus 90 ~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~-----------------------------~v~~~H~~~v~~--- 137 (189)
T cd01745 90 LALLRAALERGKPILGICRGMQLLNVALGGTLYQDI-----------------------------RVNSLHHQAIKR--- 137 (189)
T ss_pred HHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC-----------------------------ceechHHHHHhh---
Confidence 455565 46789999 9999999999999986643 467899999986
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC--CCC
Q 037843 159 RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT--SEG 200 (203)
Q Consensus 159 ~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~--~~g 200 (203)
++++++++|+++++.++|++++++++++|+|||||+..+ ++|
T Consensus 138 ~~~~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~ 181 (189)
T cd01745 138 LADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDPDS 181 (189)
T ss_pred cCCCCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCchH
Confidence 679999999999999999999873359999999999987 544
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-26 Score=182.14 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=117.5
Q ss_pred EEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cH----HHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hC
Q 037843 17 VIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TV----AELKRKKPRGVVISPGPGAPQESGISFRTVLE-LG 89 (203)
Q Consensus 17 iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~----~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~ 89 (203)
++|+|.++..++..+..++ +..+.++..+.. .. +.+. ++||||++||++.+...+. ...++. ++
T Consensus 12 ~~day~s~~~~L~~a~~~~------~~~v~~~~i~~~~~~~~~~~~~l~--~~dgivl~GG~~~~~~~~~-~~~i~~~~~ 82 (235)
T cd01746 12 LPDAYLSVLEALKHAGIAL------GVKLEIKWIDSEDLEEENAEEALK--GADGILVPGGFGIRGVEGK-ILAIKYARE 82 (235)
T ss_pred CHHHHHHHHHHHHHHHHHc------CCeeEEEEeChhhcCccchhhhhc--cCCEEEECCCCCCcchhhH-HHHHHHHHH
Confidence 3466677777788777776 666666543321 11 2232 6899999999988776543 344554 56
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccc-----cccceeEE--------------------EcccccccccccCCC--
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVS-----CMGKALVY--------------------YNEKEEADGLLAGLS-- 140 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~-----~~g~~~i~--------------------~~~~~~~~~lf~~~~-- 140 (203)
.++|+| |+|||+|+.++|+++.+++... ....+++. +....++++++..+.
T Consensus 83 ~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~ 162 (235)
T cd01746 83 NNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGK 162 (235)
T ss_pred CCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCC
Confidence 789999 9999999999999988765321 00111111 111111233334432
Q ss_pred CceEEeecccceeecC---CCCCCCeEEEEEcC-CCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 141 NPFTAGRYHGLVIEKD---SFRSDELEVTAWTE-DGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 141 ~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~-~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+...++++|+++|+++ .+..+++.++|++. ++.+++++.+++|+++|+|||||+...+.
T Consensus 163 ~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~ 225 (235)
T cd01746 163 DEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPL 225 (235)
T ss_pred CEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCC
Confidence 2467889999999653 22368999999997 89999999999997779999999877543
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th |
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=174.65 Aligned_cols=161 Identities=24% Similarity=0.251 Sum_probs=118.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-c---hHHHHHHH-
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-G---ISFRTVLE- 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~---~~~~~i~~- 87 (203)
+||+|||+++++...+.+++++. |+++.+++. .+++. ++|+|||+|| +.+.+. . ...+.+++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~------G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~ 67 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERA------GAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEA 67 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHC------CCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999 999888742 34554 6899999774 332221 1 13455665
Q ss_pred hCCCCcee--ehhHHHHHHH------------hCCeeccccc---cccccceeEEEcccccccccccCCCCceEEeeccc
Q 037843 88 LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL---VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~---~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~ 150 (203)
.++++|+| |+|+|+|+.+ +||++.+... ..+.|+..+.... .+++|++++ ...++++|+
T Consensus 68 ~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~---~~~l~~~l~-~~~~~~~Hs 143 (200)
T PRK13143 68 ARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVK---DCPLFEGID-GEYVYFVHS 143 (200)
T ss_pred HHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcC---CChhhccCC-CcEEEEEee
Confidence 46789999 9999999986 6788876531 1244777776653 367898884 455788999
Q ss_pred ceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 151 LVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 151 ~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+.+.. ++++.++|+++++ .++++...+ + +||+|||||++.
T Consensus 144 ~~~~~----~~~~~~la~~~~~~~~~~~~~~~-~-~~gvQfHPE~~~ 184 (200)
T PRK13143 144 YYAYP----DDEDYVVATTDYGIEFPAAVCND-N-VFGTQFHPEKSG 184 (200)
T ss_pred eeeCC----CCcceEEEEEcCCCEEEEEEEcC-C-EEEEeCCCccch
Confidence 98864 4678999999764 556666554 4 999999999874
|
|
| >PRK13525 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=172.29 Aligned_cols=158 Identities=22% Similarity=0.280 Sum_probs=114.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~ 87 (203)
|++|.|++....+...+ ++++.. |+.+..++. .+++. ++|||||+||+++..+. ..+.+++++
T Consensus 1 ~m~~~i~~~~g~~~~~~-~~l~~~------g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~ 67 (189)
T PRK13525 1 MMKIGVLALQGAVREHL-AALEAL------GAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLRE 67 (189)
T ss_pred CCEEEEEEcccCHHHHH-HHHHHC------CCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHH
Confidence 46899999887666554 678777 888877653 34554 58999999998765432 123456666
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCe-----------eccccccccccceeEEEcccccccccccCCCCceEEeeccccee
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGR-----------LYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVI 153 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~-----------v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v 153 (203)
..+++|+| |+|+|+|+.++|+. +.+...+++.|.. ..+.++.++++.+.++++|+|.|
T Consensus 68 ~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~--------~~~~~~~~~~~~~~~~~~H~d~v 139 (189)
T PRK13525 68 FIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSF--------EAELDIKGLGEPFPAVFIRAPYI 139 (189)
T ss_pred HHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeE--------EecccccCCCCCeEEEEEeCcee
Confidence 46789999 99999999999984 3332222222211 11456777777899999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.. +|++++++|+++. .+++++.. ++||+|||||++..
T Consensus 140 ~~---lp~~~~vlA~~~~-~~~~~~~~---~~~g~QfHPE~~~~ 176 (189)
T PRK13525 140 EE---VGPGVEVLATVGG-RIVAVRQG---NILATSFHPELTDD 176 (189)
T ss_pred ec---cCCCcEEEEEcCC-EEEEEEeC---CEEEEEeCCccCCC
Confidence 87 7899999999875 45677653 49999999999764
|
|
| >PRK13527 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=172.67 Aligned_cols=165 Identities=21% Similarity=0.280 Sum_probs=118.1
Q ss_pred EEEEeCC-chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH-h
Q 037843 15 IVVIDNY-DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE-L 88 (203)
Q Consensus 15 i~iid~~-~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~-~ 88 (203)
|+++++. ..+...+.++++.. |..++++... +.+++. ++|+|||+||++++.+. ..+.+.|++ .
T Consensus 5 vl~~~~~~~e~~~~~~~~l~~~------g~~~~~~~~~--~~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~ 74 (200)
T PRK13527 5 VLALQGDVEEHIDALKRALDEL------GIDGEVVEVR--RPGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKI 74 (200)
T ss_pred EEEECCccHHHHHHHHHHHHhc------CCCeEEEEeC--ChHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHH
Confidence 4555432 23355788888888 8888877653 345554 68999999998775321 123566666 4
Q ss_pred CCCCcee--ehhHHHHHHHhCCe-eccccccccccceeEEEcc--cc------cccccccCCCCceEEeecccceeecCC
Q 037843 89 GPTMPLF--CMGLKCIGEALEGR-LYVLLLVSCMGKALVYYNE--KE------EADGLLAGLSNPFTAGRYHGLVIEKDS 157 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~-v~~~~~~~~~g~~~i~~~~--~~------~~~~lf~~~~~~~~~~~~H~~~v~~~~ 157 (203)
..++|+| |+|+|+|+.++|++ +...+ ..++|+.++.... .+ ..+.+|.++++++.++++|++.+..
T Consensus 75 ~~~~pilGIC~G~Qll~~~~gg~~v~~~~-~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~-- 151 (200)
T PRK13527 75 EEGLPILGTCAGLILLAKEVGDDRVTKTE-QPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRAPAITK-- 151 (200)
T ss_pred HCCCeEEEECHHHHHHHhhhcCCccCCCC-CceeeeeEEEEeeccccCccccEEEeEeccccCCcceEEEEccccccc--
Confidence 6789999 99999999999984 44433 4667775554322 11 1234677888899999999999987
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 158 FRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 158 l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+|++++++|+++++.+ +++.. ++||+|||||.+..
T Consensus 152 -lp~~~~~la~~~~~~~-a~~~~---~~~g~QfHPE~~~~ 186 (200)
T PRK13527 152 -VGGDVEVLAKLDDRIV-AVEQG---NVLATAFHPELTDD 186 (200)
T ss_pred -cCCCeEEEEEECCEEE-EEEEC---CEEEEEeCCCCCCC
Confidence 7899999999988754 66643 49999999998754
|
|
| >PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-25 Score=174.24 Aligned_cols=154 Identities=23% Similarity=0.325 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCC--CCcc--------h-------H-HHHH
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAP--QESG--------I-------S-FRTV 85 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~--~~~~--------~-------~-~~~i 85 (203)
...++++++. |..+.++++. .+.+++.. ..+|||||+||..+. ..++ . + ..++
T Consensus 27 ~~Yv~~i~~a------G~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~ 99 (217)
T PF07722_consen 27 ASYVKAIEAA------GGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALI 99 (217)
T ss_dssp HHHHHHHHHT------T-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHH
Confidence 4567778887 8888888875 33433332 168999999998432 1111 0 1 2334
Q ss_pred HH-hCCCCcee--ehhHHHHHHHhCCeecccccc----c-------cccceeEEEcccccccccccCCC--CceEEeecc
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLV----S-------CMGKALVYYNEKEEADGLLAGLS--NPFTAGRYH 149 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~----~-------~~g~~~i~~~~~~~~~~lf~~~~--~~~~~~~~H 149 (203)
+. .++++||| |+|||+|+.++||++...... . ....+.+.+.. +++++.+. ....++.+|
T Consensus 100 ~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~----~s~l~~~~~~~~~~vns~H 175 (217)
T PF07722_consen 100 RNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVP----GSLLAKILGSEEIEVNSFH 175 (217)
T ss_dssp HHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEET----TSTCCCTSHHCTEEEEEEE
T ss_pred HHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceecc----CchHHHHhCcCcceeecch
Confidence 44 47899999 999999999999998865421 0 01124455443 45555544 578999999
Q ss_pred cceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCC-cEEEEcCCCC
Q 037843 150 GLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK-HLHGVQFHPE 193 (203)
Q Consensus 150 ~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~-~i~gvQfHPE 193 (203)
+++|.+ ++++++++|++.|+.++|++..+++ +++|+|||||
T Consensus 176 hq~v~~---l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 176 HQAVKP---LGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CEEECC---HHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred hhhhhc---cCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 999988 7799999999999999999999965 6999999999
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D. |
| >KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=188.44 Aligned_cols=180 Identities=26% Similarity=0.477 Sum_probs=132.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE-EeCCcccHHH---Hhc-cCCCEEEECCCCCCCCCc---chHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV-YRNDELTVAE---LKR-KKPRGVVISPGPGAPQES---GISFR 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v-~~~~~~~~~~---l~~-~~~dgiil~GG~~~~~~~---~~~~~ 83 (203)
+.++++||+||||+.++.+++.... |.+.++ ++.+...++. +.. --||+||+++|||+|.-. +...+
T Consensus 14 rl~~LlID~YDSyTfNiy~ll~~~~-----~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~r 88 (767)
T KOG1224|consen 14 RLRTLLIDNYDSYTFNIYQLLSTIN-----GVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLR 88 (767)
T ss_pred heeEEEEecccchhhhHHHHHHHhc-----CCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHH
Confidence 5789999999999999999998763 555444 4433222222 221 138999999999999432 22223
Q ss_pred HHHHhCCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 84 TVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 84 ~i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
++ ...+++||| |||||.|+.+-|+.|...+ .+.||. +.+++......+.++.|-+..|.+.+||+..+++ ++-
T Consensus 89 l~-~~~~~iPilGICLGfQal~l~hGA~v~~~n-~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~--~pi 164 (767)
T KOG1224|consen 89 LL-LECRDIPILGICLGFQALGLVHGAHVVHAN-EPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINS--LPI 164 (767)
T ss_pred HH-HhcCCCceeeeehhhHhHhhhcccceecCC-CcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEecC--Cch
Confidence 32 335689999 9999999999999999776 688998 8888877544455555556789999999999987 232
Q ss_pred CCeEEEEEc-CCC--cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 161 DELEVTAWT-EDG--LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 161 ~~~~~~a~s-~~~--~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+-+.+++++ +++ .++++.+++.| -||+|||||+..++.|.
T Consensus 165 d~l~il~t~~ddng~ilMsi~~~~fP-hfG~qyHPES~~s~~g~ 207 (767)
T KOG1224|consen 165 DLLPILWTIYDDNGHILMSIMHSSFP-HFGLQYHPESIASTYGS 207 (767)
T ss_pred hhhcceeEeecCCceEEEEeeccCCC-ccceeeChHHhhhhhhH
Confidence 444555555 333 67899999999 79999999999988774
|
|
| >COG2071 Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-25 Score=172.92 Aligned_cols=159 Identities=22% Similarity=0.316 Sum_probs=109.4
Q ss_pred HHHHHhhhhhcCCceEEEEeCC--cccHHHHhccCCCEEEECCCCCCC--CCcc---------------h-HHHHHHH-h
Q 037843 30 QYMGELELELSQGYHFEVYRND--ELTVAELKRKKPRGVVISPGPGAP--QESG---------------I-SFRTVLE-L 88 (203)
Q Consensus 30 ~~l~~~~~~~~~g~~~~v~~~~--~~~~~~l~~~~~dgiil~GG~~~~--~~~~---------------~-~~~~i~~-~ 88 (203)
+|++... .++|+.+ ++|.. ..+..++.. ..|||||||| .++ ..++ . ...+|++ +
T Consensus 30 ~yv~ai~--~aGg~pi-llP~~~d~~~~~~~l~-~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~AL 104 (243)
T COG2071 30 DYVDAII--KAGGIPI-LLPALEDPEDARQYLD-LIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAAL 104 (243)
T ss_pred HHHHHHH--HcCCceE-EecCCCCHHHHHHHHh-hccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHH
Confidence 4555542 2446665 45522 223333333 5799999999 432 1111 1 2566776 6
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccc------cccc------cceeEEEcccccccccccCCCCc-eEEeeccccee
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLL------VSCM------GKALVYYNEKEEADGLLAGLSNP-FTAGRYHGLVI 153 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~------~~~~------g~~~i~~~~~~~~~~lf~~~~~~-~~~~~~H~~~v 153 (203)
++++||| |+|+|+|+.++||++.+--. .+.. ..+.|..... +.|.+-+++. +.++++|++++
T Consensus 105 e~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~---s~La~i~g~~~~~VNS~HhQaI 181 (243)
T COG2071 105 ERGIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPG---SKLAKILGESEFMVNSFHHQAI 181 (243)
T ss_pred HcCCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCC---ccHHHhcCccceeecchHHHHH
Confidence 8999999 99999999999999886531 1111 1234444332 2343334434 89999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
.+ +.++++++|+++|+.+||+++++..|++|||||||+....+
T Consensus 182 k~---La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~ 224 (243)
T COG2071 182 KK---LAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTN 224 (243)
T ss_pred HH---hCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCC
Confidence 98 78999999999999999999998678999999999877554
|
|
| >KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-25 Score=167.91 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=126.0
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHHhccCCCEEEECCCCCCCCCcchH----HHHHHHh-CCCC
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKRKKPRGVVISPGPGAPQESGIS----FRTVLEL-GPTM 92 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l~~~~~dgiil~GG~~~~~~~~~~----~~~i~~~-~~~~ 92 (203)
|++|...++..|.+. |..++.++.. -...+++. +|||+||||+..+..+...| ...++++ ..++
T Consensus 23 yGgy~nvfvsllg~e------ge~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkk 94 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGDE------GEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKK 94 (245)
T ss_pred hcCHHHHHHHHhccc------CceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhcc
Confidence 456677788888887 8888766532 23355666 68999999998876654433 3444553 4569
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEE-cccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYY-NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~-~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
||+ |||||+||.+.||+|.+.+.++..|.-.+.. .........|..++.++.+...|+|.|.. +|++++++|+|
T Consensus 95 kvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle---~PE~a~llasS 171 (245)
T KOG3179|consen 95 KVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLE---LPEGAELLASS 171 (245)
T ss_pred ceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecccchhhcccchhhhhHHhhcccceec---CCchhhhhccc
Confidence 999 9999999999999999998776666533322 22233456788788889999999999988 88999999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+.|.++++...+ +++++|.|||++.
T Consensus 172 e~ceve~fs~~~--~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 172 EKCEVEMFSIED--HLLCFQGHPEYNK 196 (245)
T ss_pred cccceEEEEecc--eEEEecCCchhhH
Confidence 999999999988 5999999999863
|
|
| >PRK06186 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-24 Score=168.15 Aligned_cols=179 Identities=16% Similarity=0.205 Sum_probs=114.5
Q ss_pred CcEEEEeCCchHHH---HHHHHHHHhhhhhcCCceEEE--EeCCcccH-HHHhccCCCEEEECCCCCCCCCcchHHHHHH
Q 037843 13 NPIVVIDNYDSFTY---NLCQYMGELELELSQGYHFEV--YRNDELTV-AELKRKKPRGVVISPGPGAPQESGISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~---~l~~~l~~~~~~~~~g~~~~v--~~~~~~~~-~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~ 86 (203)
.+|++|--|..... ++.++|+..+.+. +..+.+ ++.++... +.+. ++|||+++||.|....++++..+-.
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~--~~~~~i~wi~s~~l~~~~~l~--~~dgilvpgGfg~rg~~Gki~ai~~ 77 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVL--GLPVDYEWLPTPEITDPEDLA--GFDGIWCVPGSPYRNDDGALTAIRF 77 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhc--CCeeEEEEEchhhcCChhhHh--hCCeeEeCCCCCcccHhHHHHHHHH
Confidence 46788844432222 2344454443222 555544 44332222 2333 6899999999999888888655444
Q ss_pred HhCCCCcee--ehhHHHHHHHhCCeeccccc--ccccc------------------ceeEEEcccccccccccCCCC--c
Q 037843 87 ELGPTMPLF--CMGLKCIGEALEGRLYVLLL--VSCMG------------------KALVYYNEKEEADGLLAGLSN--P 142 (203)
Q Consensus 87 ~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~~~g------------------~~~i~~~~~~~~~~lf~~~~~--~ 142 (203)
+..+++|+| |+|||++...++.++..... ..+.. .+.+.+.. ++++..+.. .
T Consensus 78 Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~~----~S~l~~iyg~~~ 153 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLRP----GSLIARAYGTLE 153 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEECC----CCHHHHHhCCCe
Confidence 467899999 99999988888777654331 01110 02333322 344444432 2
Q ss_pred eEEeecccceeecC---CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKD---SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 143 ~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
....+.|+|.|+.. .+..+|++++|+++|+.+++++.+++||++|+|||||+...+.
T Consensus 154 i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~ 213 (229)
T PRK06186 154 IEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAG 213 (229)
T ss_pred eeeeccccEEECHHHHHHHhcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCC
Confidence 33345677777642 2346899999999999999999999999999999999987654
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=178.50 Aligned_cols=166 Identities=18% Similarity=0.231 Sum_probs=119.7
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GIS 81 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~ 81 (203)
+++.+++|+|||++.++..++.++++.+ |+++.+++. ++++. ++|+|||+| .+++... ..+
T Consensus 2 ~~~~~~~i~iiDyG~GN~~sl~~al~~~------G~~v~~v~~----~~~l~--~~D~lIlpG-~gs~~~~m~~L~~~gl 68 (538)
T PLN02617 2 SNSADSEVTLLDYGAGNVRSVRNAIRHL------GFTIKDVQT----PEDIL--NADRLIFPG-VGAFGSAMDVLNNRGM 68 (538)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHC------CCeEEEECC----hhhhc--cCCEEEECC-CCCHHHHHHHHHHcCH
Confidence 4567899999999999999999999999 999877642 45564 679999965 4443321 113
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHHh---------C---Ceeccccc-----cccccceeEEEcccccccccccCCCC
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEAL---------E---GRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSN 141 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a~---------g---g~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~ 141 (203)
.+.|++ +..++|+| |+|||+|+.++ | |++.+... .++.||..+..... +++|.+++
T Consensus 69 ~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~---spL~~~l~- 144 (538)
T PLN02617 69 AEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKD---SELLDGVG- 144 (538)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCC---ChhHhcCC-
Confidence 445555 46789999 99999999873 2 55555421 24578877776443 78998885
Q ss_pred ceEEeecccceeecCCCCCCC-eEEEEEcC--CCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 142 PFTAGRYHGLVIEKDSFRSDE-LEVTAWTE--DGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 142 ~~~~~~~H~~~v~~~~l~~~~-~~~~a~s~--~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.+.++++|+|.+.. .+.+ ..++++++ ++.+++++.. ++||+|||||++.
T Consensus 145 ~~~vy~vHSy~v~~---~p~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQFHPE~s~ 196 (538)
T PLN02617 145 GRHVYFVHSYRATP---SDENKDWVLATCNYGGEFIASVRKG---NVHAVQFHPEKSG 196 (538)
T ss_pred CcEEEEEeEEEEEe---cCCCCcEEEEEEccCCCcEEEEEeC---CEEEEEcCCccCc
Confidence 46789999999865 3333 33445443 4588999874 3999999999986
|
|
| >TIGR00337 PyrG CTP synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-23 Score=177.68 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=115.6
Q ss_pred CCcEEEEeCCchHH---HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh------ccCCCEEEECCCCCCCCCcchHH
Q 037843 12 KNPIVVIDNYDSFT---YNLCQYMGELELELSQGYHFEVYRNDELTVAELK------RKKPRGVVISPGPGAPQESGISF 82 (203)
Q Consensus 12 ~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~------~~~~dgiil~GG~~~~~~~~~~~ 82 (203)
..+|+++--|.... .++.++|+..+. ..++.+.+.+.+ .+++. ..++|||||+||+|++...+.+
T Consensus 289 ~v~IalVGKY~~~~daY~SI~eAL~~ag~--~~~~~V~~~~i~---se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i- 362 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSYLSVIEALKHAGA--KLDTKVNIKWID---SEDLEEEGAEFLKGVDGILVPGGFGERGVEGKI- 362 (525)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHhCcc--ccCCEEEEEEec---HHHhhhhhhhhhcCCCEEEeCCCCCChhhcChH-
Confidence 47899996554333 356666666610 002344443322 22221 1258999999999998776654
Q ss_pred HHHHH-hCCCCcee--ehhHHHHHHHhCCeecccccccc-----ccceeEEE-ccc-------------------ccccc
Q 037843 83 RTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSC-----MGKALVYY-NEK-------------------EEADG 134 (203)
Q Consensus 83 ~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~-----~g~~~i~~-~~~-------------------~~~~~ 134 (203)
..++. .++++|+| |+|||+|+.++|+++.++..+.. ...+++.. ... ..+++
T Consensus 363 ~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS 442 (525)
T TIGR00337 363 LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGT 442 (525)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCC
Confidence 34444 46789999 99999999999999887652211 01122221 000 01123
Q ss_pred cccCCCC--ceEEeecccceeecC---CCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 135 LLAGLSN--PFTAGRYHGLVIEKD---SFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 135 lf~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
++..+.. .....+.|+|.|+.. .+..++++++|++.+ +.+||++.+++||++|+|||||+...+.
T Consensus 443 ~L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~ 513 (525)
T TIGR00337 443 LAFKLYGKEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPN 513 (525)
T ss_pred hHHHHhCCCceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCC
Confidence 3333332 234457788888753 223479999999987 5899999999998889999999987664
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). |
| >PRK05380 pyrG CTP synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=176.18 Aligned_cols=179 Identities=15% Similarity=0.194 Sum_probs=112.2
Q ss_pred CCcEEEEeCCchHH---HHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCCCCCCCcchHH
Q 037843 12 KNPIVVIDNYDSFT---YNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGPGAPQESGISF 82 (203)
Q Consensus 12 ~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~~~~~~~~~~~ 82 (203)
..+|+++--|.... .++.++|+..+.+. ++.+.+...+... .+.+. ++||||++||+|.+...+.+
T Consensus 288 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~--~~~v~i~wIdse~l~~~~~~~~L~--~~DGIIlpGGfG~~~~~g~i- 362 (533)
T PRK05380 288 EVTIALVGKYVELPDAYKSVIEALKHAGIAN--DVKVNIKWIDSEDLEEENVAELLK--GVDGILVPGGFGERGIEGKI- 362 (533)
T ss_pred ceEEEEEeCccCCcHHHHHHHHHHHHHHHHc--CCeeEEEEEChhhccCcchhhHhh--cCCEEEecCCCCccccccHH-
Confidence 46788885443322 23445555542211 5566554433221 12233 68999999999987666543
Q ss_pred HHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccc--cccc---------------------------cceeEEEcccc
Q 037843 83 RTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLL--VSCM---------------------------GKALVYYNEKE 130 (203)
Q Consensus 83 ~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~~~---------------------------g~~~i~~~~~~ 130 (203)
.+++. +++++|+| |+|||+|+.++||++..+.. ..+. |.+++.+..
T Consensus 363 ~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~-- 440 (533)
T PRK05380 363 LAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKP-- 440 (533)
T ss_pred HHHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECC--
Confidence 44554 46889999 99999999999999853221 0111 112333322
Q ss_pred cccccccCCCCc--eEEeecccceeecC---CCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 131 EADGLLAGLSNP--FTAGRYHGLVIEKD---SFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 131 ~~~~lf~~~~~~--~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
++++..+... ..-.+.|+|.|+.. .+...++.++|++.+ +.+++++..++||++|+|||||+...+.
T Consensus 441 --gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~ 513 (533)
T PRK05380 441 --GTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPR 513 (533)
T ss_pred --CChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence 3344444322 22345677777542 122359999999965 5999999999998889999999987654
|
|
| >PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=153.93 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=97.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI------SFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~------~~~~i~~ 87 (203)
||+|||++.++..++.++|+.+ |+++.+++. ++++. ++|+||++ |+|++.+... +.+.|++
T Consensus 1 mi~iidyg~gN~~s~~~al~~~------g~~~~~v~~----~~~l~--~~D~lIlP-G~g~~~~~~~~L~~~gl~~~i~~ 67 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHL------GYEVVVSNT----SKIID--QAETIILP-GVGHFKDAMSEIKRLNLNAILAK 67 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHc------CCCEEEEeC----HHHhc--cCCEEEEC-CCCCHHHHHHHHHHCCcHHHHHH
Confidence 4899999999999999999999 999888743 46665 57999885 4555433211 3455555
Q ss_pred hCCCCcee--ehhHHHHHHHh--C---------Ceecccccc---ccccceeEEEcccccccccccCCCCceEEeecccc
Q 037843 88 LGPTMPLF--CMGLKCIGEAL--E---------GRLYVLLLV---SCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGL 151 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~--g---------g~v~~~~~~---~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~ 151 (203)
..++|+| |+|||+|++.. | ++|.+.... +..||..+.. ..++|+ ..+++.|+|
T Consensus 68 -~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~-----~~~l~~-----~~~yFVhSy 136 (192)
T PRK13142 68 -NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS-----KHPMLN-----QDVYFVHSY 136 (192)
T ss_pred -hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccccCC-----CCcccc-----cEEEEECCC
Confidence 4679999 99999999875 2 222232210 1223322211 133442 357999999
Q ss_pred eeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 152 VIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 152 ~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.+. .++....++.-....+.+++.. +++|+|||||++.
T Consensus 137 ~v~----~~~~v~~~~~yg~~~~~~v~~~---n~~g~QFHPEkS~ 174 (192)
T PRK13142 137 QAP----MSENVIAYAQYGADIPAIVQFN---NYIGIQFHPEKSG 174 (192)
T ss_pred eEC----CCCCEEEEEECCCeEEEEEEcC---CEEEEecCcccCc
Confidence 993 2344444333322245566543 4999999999986
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-22 Score=180.07 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=136.4
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE- 87 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~- 87 (203)
...+.+|+.+|++. .++..|+|... |+++.++|++ .+..+ .+||||+|++|||+|.-.+.+..-+++
T Consensus 169 ~Gk~~~I~aiDcG~--K~N~IRcL~~R------Ga~vtVvPw~-~~i~~---~~yDGlflSNGPGdPe~~~~~v~~vr~l 236 (1435)
T KOG0370|consen 169 DGKSLRILAIDCGL--KYNQIRCLVKR------GAEVTVVPWD-YPIAK---EEYDGLFLSNGPGDPELCPLLVQNVREL 236 (1435)
T ss_pred CCcccEEEEcccCc--hHHHHHHHHHh------CceEEEecCC-ccccc---cccceEEEeCCCCCchhhHHHHHHHHHH
Confidence 34467899999975 78999999999 9999999986 33332 278999999999999988877666777
Q ss_pred hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEE
Q 037843 88 LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEV 165 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~ 165 (203)
+..++|++ |+|||+++.|.|++..+++.+.+..+.+......+ ..+...++|+|.|..++|+ .++..
T Consensus 237 L~~~~PvfGIClGHQllA~AaGakT~KmKyGNRGhNiP~~~~~tG----------rc~ITSQNHGYAVD~~tLp-~gWk~ 305 (1435)
T KOG0370|consen 237 LESNVPVFGICLGHQLLALAAGAKTYKMKYGNRGHNIPCTCRATG----------RCFITSQNHGYAVDPATLP-AGWKP 305 (1435)
T ss_pred HhCCCCeEEEehhhHHHHHhhCCceEEeeccccCCCccceeccCc----------eEEEEecCCceeecccccc-CCCch
Confidence 45569999 99999999999999999987655555565554432 2456678999999988875 89999
Q ss_pred EEEc-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 166 TAWT-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 166 ~a~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+-.+ +|+..+++.|..+| ++.+|||||.+..|.
T Consensus 306 lFvN~NDgSNEGI~Hss~P-~fSvQFHPEat~GP~ 339 (1435)
T KOG0370|consen 306 LFVNANDGSNEGIMHSSKP-FFSVQFHPEATPGPH 339 (1435)
T ss_pred heeecccCCCceEecCCCC-ceeeecCCcCCCCCc
Confidence 8888 68899999999998 999999999887664
|
|
| >cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=152.03 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=105.9
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH-hC
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE-LG 89 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~-~~ 89 (203)
|+++.. .+...+ ++++.. |+++..++. .+++. ++|+||++||+....+. ..+.+.|++ ..
T Consensus 3 vl~~qg--~~~e~~-~~l~~~------g~~v~~v~~----~~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~ 67 (183)
T cd01749 3 VLALQG--DFREHI-RALERL------GVEVIEVRT----PEDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIR 67 (183)
T ss_pred EEEecC--CcHHHH-HHHHHC------CCeEEEECC----HHHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHH
Confidence 444443 334444 788888 999888754 23444 68999999998643321 123455666 46
Q ss_pred CCCcee--ehhHHHHHHHhCC------------eeccccccccccceeEEEcccccccccccCC-CCceEEeecccceee
Q 037843 90 PTMPLF--CMGLKCIGEALEG------------RLYVLLLVSCMGKALVYYNEKEEADGLLAGL-SNPFTAGRYHGLVIE 154 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg------------~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~-~~~~~~~~~H~~~v~ 154 (203)
+++|+| |+|+|+|+.++++ ++.+...++..|+....+ .+.++ ++.+.++++|.+.|.
T Consensus 68 ~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l--------~~~~~~~~~~~~~~~h~~~v~ 139 (183)
T cd01749 68 AGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADL--------DIPGLGLGPFPAVFIRAPVIE 139 (183)
T ss_pred cCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceEEEcC--------CCCcCCCCccEEEEEECcEEE
Confidence 789999 9999999999998 454443333333322221 23344 367899999999998
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. +|++++++|+++.+. ++++.. ++||+|||||.+..
T Consensus 140 ~---~p~~~~~la~~~~~~-~a~~~~---~~~g~qfHPE~~~~ 175 (183)
T cd01749 140 E---VGPGVEVLAEYDGKI-VAVRQG---NVLATSFHPELTDD 175 (183)
T ss_pred E---cCCCcEEEEecCCEE-EEEEEC---CEEEEEcCCccCCC
Confidence 7 789999999997665 488754 39999999998853
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. |
| >TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-21 Score=147.36 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=105.5
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC----cchHHHHHHH-h
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE----SGISFRTVLE-L 88 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~----~~~~~~~i~~-~ 88 (203)
||.|+.....+.. ..++|+++ |+++.+++. ++++. ++|+|||+||+++..+ ...+.+.|++ .
T Consensus 1 ~igvl~~qg~~~e-~~~~l~~~------g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~ 67 (184)
T TIGR03800 1 KIGVLALQGAVRE-HARALEAL------GVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFI 67 (184)
T ss_pred CEEEEEccCCHHH-HHHHHHHC------CCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHH
Confidence 4666655544444 55889888 999888753 44554 6899999999765421 1224555666 4
Q ss_pred CCCCcee--ehhHHHHHHHhC-----------CeeccccccccccceeEEEcccccccccccCCC-CceEEeecccceee
Q 037843 89 GPTMPLF--CMGLKCIGEALE-----------GRLYVLLLVSCMGKALVYYNEKEEADGLLAGLS-NPFTAGRYHGLVIE 154 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~g-----------g~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~-~~~~~~~~H~~~v~ 154 (203)
++++|+| |+|||+|+.++. +++.+...+.+.+.....++. +++. +.+...+.|.+.|.
T Consensus 68 ~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~--------~~~~~~~~~~~~~h~~~v~ 139 (184)
T TIGR03800 68 LSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDI--------KGVGDDPITGVFIRAPKIV 139 (184)
T ss_pred HcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEEEEeec--------ccCCCCcceEEEEcCCCcc
Confidence 6789999 999999999973 455554433334443333322 1221 23566689999998
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
. +|++++++|+++++ +.|++.. ++||+|||||++.
T Consensus 140 ~---lp~~~~vla~~~~~-~~a~~~~---~~~gvQfHPE~~~ 174 (184)
T TIGR03800 140 S---VGNGVEILAKVGNR-IVAVRQG---NILVSSFHPELTD 174 (184)
T ss_pred c---CCCCeEEEEEeCCe-eEEEEeC---CEEEEEeCCccCC
Confidence 7 78999999998765 4677654 3999999999874
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. |
| >COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=164.62 Aligned_cols=182 Identities=17% Similarity=0.241 Sum_probs=121.9
Q ss_pred CcEEEEeCCchHHH---HHHHHHHHhhhhhcCCceEEE--EeCCcccH---HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 037843 13 NPIVVIDNYDSFTY---NLCQYMGELELELSQGYHFEV--YRNDELTV---AELKRKKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~~~~~---~l~~~l~~~~~~~~~g~~~~v--~~~~~~~~---~~l~~~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
.+|+++--|..... ++..+|+..+.+. ++.+.+ +...+... +++.. .+|||+++||.|....++++..+
T Consensus 289 v~IalVGKYv~l~DaY~Sv~EAL~hag~~~--~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eGkI~Ai 365 (533)
T COG0504 289 VTIALVGKYVELPDAYKSVIEALKHAGIAL--GVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEGKIAAI 365 (533)
T ss_pred eEEEEEECCcCchhHHHHHHHHHHhhhhhc--CCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHHHHHHH
Confidence 56888854443332 2334555442222 444444 43322221 23332 28999999999999889987666
Q ss_pred HHHhCCCCcee--ehhHHHHHHHhCCeecccccc-----------------------------ccccceeEEEccccccc
Q 037843 85 VLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV-----------------------------SCMGKALVYYNEKEEAD 133 (203)
Q Consensus 85 i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~-----------------------------~~~g~~~i~~~~~~~~~ 133 (203)
-.+.++++|+| |||||++...+..+|..+... .+.|.++..+.. .
T Consensus 366 ~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~----g 441 (533)
T COG0504 366 RYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKP----G 441 (533)
T ss_pred HHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCC----C
Confidence 56678999999 999999999877666544310 112223333322 3
Q ss_pred ccccCCCC--ceEEeecccceeecC---CCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 134 GLLAGLSN--PFTAGRYHGLVIEKD---SFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 134 ~lf~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.+.++. ...-.+.|+|.|+++ .+...|+.++++|.+ ..+++++..++||++|+|||||+..+|..+
T Consensus 442 T~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~p 515 (533)
T COG0504 442 TLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRP 515 (533)
T ss_pred cHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCC
Confidence 44444543 344557899999875 456689999999976 589999999999999999999999988754
|
|
| >PLN02327 CTP synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=168.83 Aligned_cols=139 Identities=16% Similarity=0.193 Sum_probs=95.0
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee--ehhHHHHHHHhCCeecccccc--cccc---ceeEE-Eccc----
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV--SCMG---KALVY-YNEK---- 129 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~--~~~g---~~~i~-~~~~---- 129 (203)
++||||++||+|++...+.+..+-....+++|+| |+|||+++.++++++..+... .|.. .+++. +..+
T Consensus 362 ~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~ 441 (557)
T PLN02327 362 GADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKT 441 (557)
T ss_pred cCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccc
Confidence 6899999999998877776533222346889999 999999999999988876521 1111 12221 1110
Q ss_pred --------------cc-ccccccCCCC---ceEEeecccceeecC---CCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEE
Q 037843 130 --------------EE-ADGLLAGLSN---PFTAGRYHGLVIEKD---SFRSDELEVTAWTEDG-LIMAARHKKYKHLHG 187 (203)
Q Consensus 130 --------------~~-~~~lf~~~~~---~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~g 187 (203)
.. ++++...++. .....+.|+|+|+++ .+..+++.++|++.++ .++++++.++|+++|
T Consensus 442 ~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvG 521 (557)
T PLN02327 442 HMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVG 521 (557)
T ss_pred cCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEE
Confidence 00 1223333332 234567788999775 2335899999999776 799999999997779
Q ss_pred EcCCCCCCCCCCC
Q 037843 188 VQFHPESILTSEG 200 (203)
Q Consensus 188 vQfHPE~~~~~~g 200 (203)
+|||||+...+..
T Consensus 522 VQfHPE~~s~p~~ 534 (557)
T PLN02327 522 VQFHPEFKSRPGK 534 (557)
T ss_pred EEcCCCCCCCCCC
Confidence 9999999876543
|
|
| >PRK05368 homoserine O-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=149.29 Aligned_cols=176 Identities=17% Similarity=0.126 Sum_probs=120.3
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCce--EEEEeCCc---------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYH--FEVYRNDE---------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~--~~v~~~~~---------------~~~~~l~~~~~dgiil~GG 71 (203)
..+|+||+.-..- ...+.|.|... .+. ++.+.... .+.++++..+|||+||||+
T Consensus 35 pl~i~ilNlMp~k~~TE~q~~rll~~~------~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 35 PLKILILNLMPKKIETETQFLRLLGNT------PLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CccEEEEeCCCCCchHHHHHHHHhcCC------CceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 3789999765422 23455655443 334 44443321 1345565568999999999
Q ss_pred CCC--CCCcch-H---HHHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCc
Q 037843 72 PGA--PQESGI-S---FRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 72 ~~~--~~~~~~-~---~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
|.. +++... + .++++.. .+.+|+| |+|+|+++.++||...........|......... .++|++++++.
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~--~~pL~~g~~d~ 186 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDP--HHPLLRGFDDS 186 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCC--CChhhcCCCCc
Confidence 977 443322 2 2333322 4579999 9999999999999633222124566544444322 47899999999
Q ss_pred eEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|.+.++|...|..+.+ .+++++++|.|+.+.++++..++.+ ++++|+|||++.
T Consensus 187 F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r-~~~vQgHPEYd~ 240 (302)
T PRK05368 187 FLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDKR-EVFVTGHPEYDA 240 (302)
T ss_pred cccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCC-EEEEECCCCCCH
Confidence 9999998888853322 4689999999999999999986665 999999999975
|
|
| >TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=144.82 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=110.6
Q ss_pred CcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC--------cchHHH
Q 037843 13 NPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE--------SGISFR 83 (203)
Q Consensus 13 ~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~--------~~~~~~ 83 (203)
+||+||++..++ ...+.++|++. |+.+.+++..+. ++. ++|+|||+||+..-.. ...+.+
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~------G~~~~~i~~~~~---~l~--~~d~lilpGG~~~~d~~~~~~~~~~~~~~~ 69 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLL------GVDAEIVWYEDG---SLP--DYDGVVLPGGFSYGDYLRAGAIAAASPIMQ 69 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHC------CCeEEEEecCCC---CCC--CCCEEEECCCCcccccccccchhcchHHHH
Confidence 379999998776 46688999988 999888765422 233 6899999998742111 112345
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccccc--eeEEEcccccccccccCCCCceEEee--cccc---
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCMGK--ALVYYNEKEEADGLLAGLSNPFTAGR--YHGL--- 151 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~g~--~~i~~~~~~~~~~lf~~~~~~~~~~~--~H~~--- 151 (203)
++++ .+.++||+ |.|+|+|+.+ ++|.+.+.. ..+++. ..++.. ...++++++++....++. .|++
T Consensus 70 ~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~-~~~~~~~~~~~~v~--~~~~~~~~~~~~g~~~~~pi~H~eG~y 146 (227)
T TIGR01737 70 EVREFAEKGVPVLGICNGFQILVEAGLLPGALLPND-SLRFICRWVYLRVE--NADTIFTKNYKKGEVIRIPIAHGEGRY 146 (227)
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecC-CCceEEEeEEEEEC--CCCChhhccCCCCCEEEEEeEcCCcCe
Confidence 5666 46789999 9999999996 888887765 234433 334333 233668888774222222 4433
Q ss_pred eeecC---CCCCCCeEEEEE-c----------CC---CcEEEEEeCCCCcEEEEcCCCCCC-----CCCCC
Q 037843 152 VIEKD---SFRSDELEVTAW-T----------ED---GLIMAARHKKYKHLHGVQFHPESI-----LTSEG 200 (203)
Q Consensus 152 ~v~~~---~l~~~~~~~~a~-s----------~~---~~v~a~~~~~~~~i~gvQfHPE~~-----~~~~g 200 (203)
.++++ .|...+..++-+ + .+ +.++++.+++++ ++|+|||||+. .+++|
T Consensus 147 ~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~-~~g~~~HpE~~~~~~~~~~~g 216 (227)
T TIGR01737 147 YADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGN-VLGMMPHPERASEKLLGGDDG 216 (227)
T ss_pred EcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCC-EEEEecCchhhcccccCCccc
Confidence 33221 122222222222 2 22 368899999987 99999999999 56655
|
In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. |
| >KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=139.88 Aligned_cols=187 Identities=15% Similarity=0.242 Sum_probs=118.0
Q ss_pred CcEEEEeCCchHHHHHH---HHHHHhhhhhcCCceEEEEeCCcc-------cHHHHh-----ccCCCEEEECCCCCCCCC
Q 037843 13 NPIVVIDNYDSFTYNLC---QYMGELELELSQGYHFEVYRNDEL-------TVAELK-----RKKPRGVVISPGPGAPQE 77 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~---~~l~~~~~~~~~g~~~~v~~~~~~-------~~~~l~-----~~~~dgiil~GG~~~~~~ 77 (203)
-+|+++--|.....+.. ++|+....+-...+.+..+...+. ++.... ....|||+++||.|+..-
T Consensus 299 V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGv 378 (585)
T KOG2387|consen 299 VRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGV 378 (585)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccch
Confidence 57888876665554433 444433222233455555543111 111110 025799999999999998
Q ss_pred cchHHHHHHHhCCCCcee--ehhHHHHHHHhCCeecccccc------c----------------------cccceeEEEc
Q 037843 78 SGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV------S----------------------CMGKALVYYN 127 (203)
Q Consensus 78 ~~~~~~~i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~------~----------------------~~g~~~i~~~ 127 (203)
++.+.++-.+.++++|+| |||||+.+..|..++..+... + +.|.....+.
T Consensus 379 eG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~ 458 (585)
T KOG2387|consen 379 EGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQ 458 (585)
T ss_pred hHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeee
Confidence 988765555566889999 999999998887666554310 0 0111111111
Q ss_pred ccccccccccCCCC---ceEEeecccceeecC---CCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 128 EKEEADGLLAGLSN---PFTAGRYHGLVIEKD---SFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 128 ~~~~~~~lf~~~~~---~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
.. ++..+.++. ...-.+.|+|+|+++ .+...|+..++.+.++ ..+.++.+++|+++|+|||||+...+.-
T Consensus 459 ~~---~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~k 535 (585)
T KOG2387|consen 459 DK---DSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDK 535 (585)
T ss_pred cC---chHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCC
Confidence 11 112222221 122346799999875 4566899999999776 6889999999999999999999998875
Q ss_pred CC
Q 037843 201 KT 202 (203)
Q Consensus 201 ~~ 202 (203)
+.
T Consensus 536 ps 537 (585)
T KOG2387|consen 536 PS 537 (585)
T ss_pred CC
Confidence 43
|
|
| >PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-17 Score=127.90 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=112.0
Q ss_pred CcEEEEeCCchHH-HHHHHHHH-HhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--------CcchHH
Q 037843 13 NPIVVIDNYDSFT-YNLCQYMG-ELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--------ESGISF 82 (203)
Q Consensus 13 ~~i~iid~~~~~~-~~l~~~l~-~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--------~~~~~~ 82 (203)
+||+||.+..++. ..+.++|+ .. |+.+..+...+ .++. ++|+|||+||+..-. ....+.
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~------G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~ 69 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLL------GAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIM 69 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcC------CCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHH
Confidence 3799999998884 55888998 67 88887765432 2343 689999999864211 112345
Q ss_pred HHHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccc--cceeEEEcccccccccccCCCC--ceEEe---eccc
Q 037843 83 RTVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCM--GKALVYYNEKEEADGLLAGLSN--PFTAG---RYHG 150 (203)
Q Consensus 83 ~~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~--g~~~i~~~~~~~~~~lf~~~~~--~~~~~---~~H~ 150 (203)
+++++ ..+++|++ |.|+|+|+.+ ++|++.+.. ..+. .+..+.+.. ..+++++++.. .+.+. .-|+
T Consensus 70 ~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~-~~~~~~~~v~v~i~~--~~~~~~~~~~~g~~~~~~~aH~~~r 146 (219)
T PRK03619 70 KAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNA-SLKFICRDVHLRVEN--NDTPFTSGYEKGEVIRIPIAHGEGN 146 (219)
T ss_pred HHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcC-CCcEEEEEEEEEECC--CCChhhcCCCCCCEEEEEEEcCccc
Confidence 56666 46789999 9999999997 899888776 3344 334444432 34678877742 23332 3355
Q ss_pred ceeecC---CCCCCCeEEEEEc---CCC---cEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 151 LVIEKD---SFRSDELEVTAWT---EDG---LIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 151 ~~v~~~---~l~~~~~~~~a~s---~~~---~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
|.++.+ .+...++.++.++ .++ .+.++...+. +++|+|||||+...+
T Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~-~~~g~~~HPE~~~~~ 202 (219)
T PRK03619 147 YYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKG-NVLGMMPHPERAVEP 202 (219)
T ss_pred EEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCC-CEEEEeCCCCccccC
Confidence 555432 2344677766665 444 4566665443 699999999999765
|
|
| >PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=116.28 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC----cchHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE----SGISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~----~~~~~~~i~~ 87 (203)
|++|.||...+++... .++|+.+ |+++.+++. ++++. ++|+|||+||.+.... ...+.+.|++
T Consensus 1 ~m~igVLa~qG~~~e~-~~aL~~l------G~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~ 67 (248)
T PLN02832 1 MMAIGVLALQGSFNEH-IAALRRL------GVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALRE 67 (248)
T ss_pred CcEEEEEeCCCchHHH-HHHHHHC------CCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHH
Confidence 4589999999887666 4789888 888877643 46666 5799999997653211 1123455565
Q ss_pred -hCCCCcee--ehhHHHHHHHh
Q 037843 88 -LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~ 106 (203)
..+++|+| |+|||+|+...
T Consensus 68 ~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 68 FVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred HHHcCCCEEEEChhHHHHHHHh
Confidence 35789999 99999999865
|
|
| >KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-16 Score=120.61 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=101.6
Q ss_pred CceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcchHHHH-----HHHh--CCCCcee--ehhHHHHHHHhC--C
Q 037843 42 GYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESGISFRT-----VLEL--GPTMPLF--CMGLKCIGEALE--G 108 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~~~~~~-----i~~~--~~~~Pil--ClG~Qlla~a~g--g 108 (203)
|++|..+.+++ +.+.+. ..-.+|||++||-....++-++.+. +++. +...||+ |+|+.+|..... .
T Consensus 90 GARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnr 168 (340)
T KOG1559|consen 90 GARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNR 168 (340)
T ss_pred CceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcCh
Confidence 99999888863 333221 1147999999996655565444333 2332 4789999 999999987543 3
Q ss_pred eeccccccccccceeEEEccccc-ccccccCCC--------CceEEeecccceeecCCC-----CCCCeEEEEEcCCC--
Q 037843 109 RLYVLLLVSCMGKALVYYNEKEE-ADGLLAGLS--------NPFTAGRYHGLVIEKDSF-----RSDELEVTAWTEDG-- 172 (203)
Q Consensus 109 ~v~~~~~~~~~g~~~i~~~~~~~-~~~lf~~~~--------~~~~~~~~H~~~v~~~~l-----~~~~~~~~a~s~~~-- 172 (203)
.+...- ..+.-..++.+..... .+++|+.+| ..--+.++|.|.+.++++ +..-|.++.++.|+
T Consensus 169 dile~~-d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~ 247 (340)
T KOG1559|consen 169 DILERF-DAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNS 247 (340)
T ss_pred hHHHhh-cccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheeeecCCCc
Confidence 332211 1111113444443222 244666655 334577899999987644 22345666665332
Q ss_pred --cEEEEEeCCCCcEEEEcCCCCCCCCCCCCCC
Q 037843 173 --LIMAARHKKYKHLHGVQFHPESILTSEGKTK 203 (203)
Q Consensus 173 --~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~~ 203 (203)
.+..++...+| ++|+|||||+...|||..+
T Consensus 248 k~fvSTv~~~kYP-vtgfQWHPEKnafEWgss~ 279 (340)
T KOG1559|consen 248 KTFVSTVESKKYP-VTGFQWHPEKNAFEWGSSD 279 (340)
T ss_pred eEEEEeecceecc-ceeeeecCccCccccccCC
Confidence 68889999999 9999999999999999753
|
|
| >PRK13526 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-14 Score=106.88 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=103.5
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC--C--CcchHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP--Q--ESGISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~--~--~~~~~~~~i~~~ 88 (203)
.+|.|+...+.+.. -.++++.+ |+++.+++ +++++. ++|+|||+||.+.. . ....+.+.|+++
T Consensus 3 ~~igVLalqG~~~E-h~~al~~l------G~~v~~v~----~~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~ 69 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKSL------GVEVKLVK----FNNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNF 69 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHHc------CCcEEEEC----CHHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHH
Confidence 67999998888876 55688888 88877654 456666 67999999985542 1 112356667775
Q ss_pred CCCCcee--ehhHHHHHHH---hC---CeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 89 GPTMPLF--CMGLKCIGEA---LE---GRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a---~g---g~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
.+++|++ |.|+|+|+.. || ++|.++..+.... ++... --+.++ ++...+...-.|.. ..
T Consensus 70 ~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~----sf~~~----~~~~~~--~~~~vFiRAP~i~~---~~ 136 (179)
T PRK13526 70 CSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVD----SFVAD----ISFNDK--NITGVFIRAPKFIV---VG 136 (179)
T ss_pred HcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcCCCCccc----eeeee----cCcCCc--eEEEEEEcCceEeE---cC
Confidence 4468999 9999999983 33 5666655322111 11110 001122 36667777777776 56
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 161 ~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++.+++|+-++ .+-+++.. +++++-||||.+.
T Consensus 137 ~~v~vla~~~~-~~v~v~q~---~~l~~~FHPElt~ 168 (179)
T PRK13526 137 NQVDILSKYQN-SPVLLRQA---NILVSSFHPELTQ 168 (179)
T ss_pred CCcEEEEEECC-EEEEEEEC---CEEEEEeCCccCC
Confidence 89999998854 45566665 3999999999874
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.5e-15 Score=120.29 Aligned_cols=165 Identities=16% Similarity=0.267 Sum_probs=110.5
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-c-----hHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-G-----ISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~-----~~~~~i~ 86 (203)
+-|.+||++.++.+++.++++.+ |.++..+. ++.++. +.|-+|+ +|.|+.... + -..+-++
T Consensus 2 ~vv~~ld~~agn~~si~nal~hl------g~~i~~v~----~P~DI~--~a~rLIf-PGVGnfg~~~D~L~~~Gf~eplr 68 (541)
T KOG0623|consen 2 SVVTLLDYGAGNVRSIRNALRHL------GFSIKDVQ----TPGDIL--NADRLIF-PGVGNFGPAMDVLNRTGFAEPLR 68 (541)
T ss_pred ceEEEEecCCccHHHHHHHHHhc------Cceeeecc----Cchhhc--cCceEee-cCcccchHHHHHHhhhhhHHHHH
Confidence 45789999999999999999999 99987653 456676 4588988 666664321 1 1245566
Q ss_pred H-hCCCCcee--ehhHHHHHHH------------hCCeeccccc----cccccceeEEEcccccccccccCCCCceEEee
Q 037843 87 E-LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGR 147 (203)
Q Consensus 87 ~-~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~ 147 (203)
+ ...++|++ |.|.|+|... +-|.|.+... -+..||.....-. +..|-+....-.+|+
T Consensus 69 ~YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~s----d~effg~~p~~~~YF 144 (541)
T KOG0623|consen 69 KYIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGS----DSEFFGDVPNRHVYF 144 (541)
T ss_pred HHHhcCCCeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCC----cccccccCCCceEEE
Confidence 6 47889999 9999999752 1133333321 2356665444332 234445444567899
Q ss_pred cccceeec--CCCCCCCeEEEEEc--CCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 148 YHGLVIEK--DSFRSDELEVTAWT--EDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 148 ~H~~~v~~--~~l~~~~~~~~a~s--~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.|+|-... .+++++++++.... +..++.+++.. +++++|||||.+..
T Consensus 145 VHSyl~~ek~~~len~~wkiat~kYG~E~Fi~ai~kn---N~~AtQFHPEKSG~ 195 (541)
T KOG0623|consen 145 VHSYLNREKPKSLENKDWKIATCKYGSESFISAIRKN---NVHATQFHPEKSGE 195 (541)
T ss_pred EeeecccccccCCCCCCceEeeeccCcHHHHHHHhcC---ceeeEecccccccc
Confidence 99995533 25667788764443 23467787654 49999999999864
|
|
| >cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=102.94 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=105.6
Q ss_pred EEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH--HHhccCCCEEEECCCCCCCCCc--------ch-HHH
Q 037843 16 VVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA--ELKRKKPRGVVISPGPGAPQES--------GI-SFR 83 (203)
Q Consensus 16 ~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~--~l~~~~~dgiil~GG~~~~~~~--------~~-~~~ 83 (203)
+||- .+......+.++|++. |+.+.+++..+.... ++. ++|+|||+||+...... .. ..+
T Consensus 2 ~vl~~pG~n~~~~~~~al~~a------G~~v~~v~~~~~~~~~~~l~--~~d~liipGG~~~~d~l~~~~~~~~~~~~~~ 73 (238)
T cd01740 2 AVLRFPGSNCDRDMAYAFELA------GFEAEDVWHNDLLAGRKDLD--DYDGVVLPGGFSYGDYLRAGAIAAASPLLME 73 (238)
T ss_pred EEEEcCCcCCHHHHHHHHHHc------CCCEEEEeccCCccccCCHh--hCCEEEECCCCCcccccccccccccChhHHH
Confidence 4553 3444456788899888 999988876422111 232 68999999997432111 11 445
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccccce----eEEEcccccccccccC--CCCceEEeecccce
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCMGKA----LVYYNEKEEADGLLAG--LSNPFTAGRYHGLV 152 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~g~~----~i~~~~~~~~~~lf~~--~~~~~~~~~~H~~~ 152 (203)
++++ ..+++|+| |.|+|+|+.+ +++++...+. .+.... -+........+.++.. ....+.++..|++.
T Consensus 74 ~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~-~~~~~~~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG 152 (238)
T cd01740 74 EVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKG-LKFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEG 152 (238)
T ss_pred HHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCC-CceeccccCceEEEEEcCCCCceecCCCCCCEEEEEeECCce
Confidence 6666 46789999 9999999997 8888866542 222111 1222222223556665 33567788888762
Q ss_pred --eec-C---CCCCCCeEEEE------------EcCCC---cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 153 --IEK-D---SFRSDELEVTA------------WTEDG---LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 153 --v~~-~---~l~~~~~~~~a------------~s~~~---~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+.. + .+...+-.+-. .+.++ .|+++...+.+ ++|...|||+...++.
T Consensus 153 ~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlglMphPer~~~~~q 220 (238)
T cd01740 153 RFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLGMMPHPERAVEPWQ 220 (238)
T ss_pred eeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEEEcCChHHcccccc
Confidence 111 1 11112211101 12233 48999999987 9999999999987754
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site |
| >PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=97.24 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=102.9
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCC--Ccc-----h-
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQ--ESG-----I- 80 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~--~~~-----~- 80 (203)
++||+||...+++ .....++|+.. |+.+.+++..+.. ...+. ++|+|||+||.+... ..+ .
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~Al~~a------G~~v~~v~~~~~~~~~~~l~--~~DgLvipGGfs~gD~l~~g~~~~~~l 74 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVKAFRRL------GVEPEYVHINDLAAERKSVS--DYDCLVIPGGFSAGDYIRAGAIFAARL 74 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHC------CCcEEEEeeccccccccchh--hCCEEEECCCCCcccccccchhhHHHH
Confidence 4689999875554 55677888888 9888887653211 11233 689999999964211 121 1
Q ss_pred ---HHHHHHH-hCCCCcee--ehhHHHHHHH--hCC----------eeccccccc-cccceeEEEcccccccccccCCCC
Q 037843 81 ---SFRTVLE-LGPTMPLF--CMGLKCIGEA--LEG----------RLYVLLLVS-CMGKALVYYNEKEEADGLLAGLSN 141 (203)
Q Consensus 81 ---~~~~i~~-~~~~~Pil--ClG~Qlla~a--~gg----------~v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~~ 141 (203)
+.+.|++ +++++|+| |.|+|+|+.+ +.| .+.++.... +--|..++... .++++++++..
T Consensus 75 ~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~--~~s~~~~~~~~ 152 (261)
T PRK01175 75 KAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKEN--RKCIFTKLLKK 152 (261)
T ss_pred HHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECC--CCChhHhccCC
Confidence 1244555 47889999 9999999984 323 222222111 11123333332 33566665542
Q ss_pred -ceEEeecccce--e-ecC----CCCCCCeEEEEE------------cCC---CcEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 142 -PFTAGRYHGLV--I-EKD----SFRSDELEVTAW------------TED---GLIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 142 -~~~~~~~H~~~--v-~~~----~l~~~~~~~~a~------------s~~---~~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
.+.+...|++. + ..+ .|...+..++-+ +.+ ..|+++...+.+ ++|...|||+...+
T Consensus 153 ~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~-vlglMpHPEr~~~~ 231 (261)
T PRK01175 153 DVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGN-VIGLMPHPERAFYG 231 (261)
T ss_pred CEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCC-EEEEcCCHHHhhch
Confidence 23334456442 2 111 122234444433 222 258899999987 99999999998876
Q ss_pred C
Q 037843 199 E 199 (203)
Q Consensus 199 ~ 199 (203)
+
T Consensus 232 ~ 232 (261)
T PRK01175 232 Y 232 (261)
T ss_pred h
Confidence 5
|
|
| >COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-10 Score=83.93 Aligned_cols=158 Identities=21% Similarity=0.288 Sum_probs=93.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC-----CCcchHHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP-----QESGISFRTVLE 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~-----~~~~~~~~~i~~ 87 (203)
++|.||...+.+...+. .++++. |+.+..++ .++++. ..||+||+||-+.. .+++...++.+.
T Consensus 1 m~IGVLalQG~v~EH~~-~l~~~~-----~~e~~~Vk----~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~ 68 (194)
T COG0311 1 MKIGVLALQGAVEEHLE-ALEKAG-----GAEVVEVK----RPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREF 68 (194)
T ss_pred CeEEEEEecccHHHHHH-HHHhhc-----CCceEEEc----CHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHH
Confidence 46778876666655543 455551 36665553 467877 57999999997542 123333333333
Q ss_pred hCCCCcee--ehhHHHHHHHhC-Ce-----------eccccccccccceeEEEcccccccccccCCCC--ceEEeecccc
Q 037843 88 LGPTMPLF--CMGLKCIGEALE-GR-----------LYVLLLVSCMGKALVYYNEKEEADGLLAGLSN--PFTAGRYHGL 151 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~g-g~-----------v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~--~~~~~~~H~~ 151 (203)
..+++|+| |-||-+|+...- +. |.|+. .|.+.-+++.+ --++++.. .+...+....
T Consensus 69 ~~~G~Pv~GTCAGlIlLakei~~~~~~~~Lg~mdi~V~RNA----fGRQ~dSFe~~----~di~~~~~~~~~~avFIRAP 140 (194)
T COG0311 69 IADGLPVFGTCAGLILLAKEILDGPEQPLLGLLDVTVRRNA----FGRQVDSFETE----LDIEGFGLPFPFPAVFIRAP 140 (194)
T ss_pred HHcCCceEEechhhhhhhhhhcCCCCCcccceEEEEEEccc----cccccccceee----EEeecccCCCcceEEEEEcc
Confidence 56799999 999999997543 21 11111 22211111110 01222222 2555667777
Q ss_pred eeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 152 VIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 152 ~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.|.. ..++.+++|+-++ .+-+++.. +++++-||||.+..
T Consensus 141 ~I~~---vg~~V~vLa~l~~-~iVav~qg---n~LatsFHPELT~D 179 (194)
T COG0311 141 VIEE---VGDGVEVLATLDG-RIVAVKQG---NILATSFHPELTDD 179 (194)
T ss_pred eeeh---hcCcceEeeeeCC-EEEEEEeC---CEEEEecCccccCC
Confidence 7766 4468999998866 45555554 39999999998753
|
|
| >COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-10 Score=87.42 Aligned_cols=174 Identities=17% Similarity=0.253 Sum_probs=103.7
Q ss_pred CCCcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCC--CCCCcch------H
Q 037843 11 DKNPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG--APQESGI------S 81 (203)
Q Consensus 11 ~~~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~--~~~~~~~------~ 81 (203)
+++||+||-.-.++. .-...+++.+ |.++..++..+..... ++|+||++||.+ +.-..+. +
T Consensus 1 ~~~kvaVi~fpGtN~d~d~~~A~~~a------G~~~~~V~~~d~~~~~----~~d~vv~pGGFSyGDyLr~Gaiaa~~~v 70 (231)
T COG0047 1 ARPKVAVLRFPGTNCDYDMAAAFERA------GFEAEDVWHSDLLLGR----DFDGVVLPGGFSYGDYLRAGAIAAIAPV 70 (231)
T ss_pred CCceEEEEEcCCcCchHHHHHHHHHc------CCCceEEEeeecccCC----CccEEEEcCCCCcccccCcchHHhhHHH
Confidence 368999997766653 3467788877 8888877654222211 589999999974 2222333 2
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccccc-eeEEEcccccccccccCCC--CceEEeecccce-
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLS--NPFTAGRYHGLV- 152 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~--~~~~~~~~H~~~- 152 (203)
.+.+++ +++++|+| |-|+|+|.++ +.|...++........ ..++.. ..++++++++. +.+.+--.|+..
T Consensus 71 ~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~--~~~t~ft~~~~~g~~i~ipVAHgEGr 148 (231)
T COG0047 71 MDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVE--NNNTPFTSGYEGGEVIPIPVAHGEGR 148 (231)
T ss_pred HHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEe--cCCCHHHHhcCCCceEEEEEeeccee
Confidence 444555 46899999 9999999964 5576666652211111 333333 22344555543 234555556442
Q ss_pred --eecCC---CCCCCeEEEEEc-----------CCC---cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 153 --IEKDS---FRSDELEVTAWT-----------EDG---LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 153 --v~~~~---l~~~~~~~~a~s-----------~~~---~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
++.+. |..++-.++-+. .++ .|+++...+.+ ++|..=||||...
T Consensus 149 ~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~-V~gmMPHPERa~~ 211 (231)
T COG0047 149 YYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGN-VLGMMPHPERASE 211 (231)
T ss_pred EEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCC-EEEecCCchhhhh
Confidence 22111 222222333222 233 58889888886 9999999999764
|
|
| >PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=85.35 Aligned_cols=180 Identities=18% Similarity=0.163 Sum_probs=97.2
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC--cch--------
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE--SGI-------- 80 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~--~~~-------- 80 (203)
++||+|+-..+++ ...+..+|+.. |.++..+...+...++....++|+|+|+||.+.-+. .+.
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~a------G~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~ 74 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENA------GFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLF 74 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCT------T-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHc------CCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhc
Confidence 5789999766655 56688899988 999988775432111112227899999999753221 222
Q ss_pred ---HHHHHHH-hCC-CCcee--ehhHHHHHHH--hCC----------eeccccccc-cccceeEEEcccccccccccCCC
Q 037843 81 ---SFRTVLE-LGP-TMPLF--CMGLKCIGEA--LEG----------RLYVLLLVS-CMGKALVYYNEKEEADGLLAGLS 140 (203)
Q Consensus 81 ---~~~~i~~-~~~-~~Pil--ClG~Qlla~a--~gg----------~v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~ 140 (203)
+.+.+++ +++ +.|+| |-|+|+|.+. +.+ .+.++..+. +-.|..+..... .+...++++.
T Consensus 75 ~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~-s~~~~~~~~~ 153 (259)
T PF13507_consen 75 NSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNEN-SPSIFLRGLE 153 (259)
T ss_dssp SCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--S-STTCCCTTTT
T ss_pred cHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecC-CcceecCCCC
Confidence 2444555 345 89999 9999999875 555 333333111 122333322111 1233344542
Q ss_pred CceEEeecccce--ee-cC----CCCCCCeEEEEEcCC----------------CcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 NPFTAGRYHGLV--IE-KD----SFRSDELEVTAWTED----------------GLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 ~~~~~~~~H~~~--v~-~~----~l~~~~~~~~a~s~~----------------~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.+.+.-.|++. +. .+ .|...+..++-+.+. ..|+++...+.+ ++|...|||+...
T Consensus 154 -~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~Gr-vlglMpHPEr~~~ 231 (259)
T PF13507_consen 154 -GIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGR-VLGLMPHPERAFE 231 (259)
T ss_dssp -CEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSS-EEEESSBCCGTTC
T ss_pred -EEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCC-EEEEcCChHHhCc
Confidence 34444445432 21 11 233345555544431 368999999997 9999999999987
Q ss_pred CCC
Q 037843 198 SEG 200 (203)
Q Consensus 198 ~~g 200 (203)
++.
T Consensus 232 ~~~ 234 (259)
T PF13507_consen 232 PWQ 234 (259)
T ss_dssp CCC
T ss_pred hhh
Confidence 764
|
|
| >PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=81.19 Aligned_cols=143 Identities=24% Similarity=0.314 Sum_probs=79.7
Q ss_pred HHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC----CcchHHHHHHHh-CCC-Ccee--ehhHHH
Q 037843 30 QYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ----ESGISFRTVLEL-GPT-MPLF--CMGLKC 101 (203)
Q Consensus 30 ~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~----~~~~~~~~i~~~-~~~-~Pil--ClG~Ql 101 (203)
+.++++ |++...++ +++++. ++||+||+||-+..- ....+.+.|+++ ..+ +|+| |-||-+
T Consensus 13 ~~l~~l------g~~~~~Vr----~~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 13 RMLERL------GAEVVEVR----TPEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp HHHHHT------TSEEEEE-----SGGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred HHHHHc------CCCeEEeC----CHHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 467777 88876664 356776 579999999864311 111234556653 344 9999 999999
Q ss_pred HHHHhCCe-----------eccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 102 IGEALEGR-----------LYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 102 la~a~gg~-----------v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|+....+. |.|+.++.........+ -+.++..++...+..--.|..- ..+++..+++..+
T Consensus 81 La~~v~~~~q~~Lg~ldi~V~RNafGrQ~~SFe~~l--------~i~~~~~~~~avFIRAP~I~~v-~~~~~v~vla~~~ 151 (188)
T PF01174_consen 81 LAKEVEGQGQPLLGLLDITVRRNAFGRQLDSFEADL--------DIPGLGEPFPAVFIRAPVIEEV-GSPEGVEVLAELD 151 (188)
T ss_dssp HEEEECSSCCTSS--EEEEEETTTTCSSSCEEEEEE--------EETTTESEEEEEESS--EEEEE---TTTEEEEEEET
T ss_pred hhhhhhhcccccccceeEEEEccccccchhcEEEEE--------EeecCCCcEEEEEcCCcEEEEe-ecccccccccccc
Confidence 99754332 22222222111111111 1223334677777777777651 0126889888876
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. .+-+++.. +++++-||||.+..
T Consensus 152 g-~iVav~qg---n~latsFHPELT~D 174 (188)
T PF01174_consen 152 G-KIVAVRQG---NILATSFHPELTDD 174 (188)
T ss_dssp T-EEEEEEET---TEEEESS-GGGSST
T ss_pred c-ceEEEEec---CEEEEEeCCcccCc
Confidence 5 45566654 49999999997753
|
The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A. |
| >PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: |
Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-09 Score=86.02 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=79.4
Q ss_pred HHHHhccCCCEEEECCCCCCCCCc---ch---HHHHHHHh-CCCCcee--ehhHHH-HHHHhCCeeccccccccccceeE
Q 037843 55 VAELKRKKPRGVVISPGPGAPQES---GI---SFRTVLEL-GPTMPLF--CMGLKC-IGEALEGRLYVLLLVSCMGKALV 124 (203)
Q Consensus 55 ~~~l~~~~~dgiil~GG~~~~~~~---~~---~~~~i~~~-~~~~Pil--ClG~Ql-la~a~gg~v~~~~~~~~~g~~~i 124 (203)
.+++....+||+||||.|-.--+. +- +.+++.-. .+..+.| |+|.|. |....|-.-..++ ....|..+-
T Consensus 91 ~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~-~KlfGVf~~ 169 (298)
T PF04204_consen 91 FDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLP-EKLFGVFEH 169 (298)
T ss_dssp HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEE-EEEEEEEEE
T ss_pred HHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCC-Ccceeceee
Confidence 445555589999999998643222 21 22333322 3557888 999999 7777888877776 455677554
Q ss_pred EEcccccccccccCCCCceEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 125 YYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 125 ~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.... ..++|++|+++.|.+-++..-.+..+.+ ..++++++|.|+..-+..+..++++ .+=+|.|||+...
T Consensus 170 ~~~~--~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r-~vfi~GH~EYd~~ 240 (298)
T PF04204_consen 170 RVLD--PDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGR-QVFITGHPEYDAD 240 (298)
T ss_dssp EES---SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCT-EEEE-S-TT--TT
T ss_pred eccC--CCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCC-EEEEeCCCccChh
Confidence 4332 2389999999888776544334443333 3579999999987767777777776 7789999998753
|
Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A. |
| >cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS) | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-09 Score=80.64 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=71.8
Q ss_pred HHhccCCCEEEECCCCCCCCCcch------HHHHHHHh-CCCCcee--ehhHHHHHHHhCCee-ccccccccccceeEEE
Q 037843 57 ELKRKKPRGVVISPGPGAPQESGI------SFRTVLEL-GPTMPLF--CMGLKCIGEALEGRL-YVLLLVSCMGKALVYY 126 (203)
Q Consensus 57 ~l~~~~~dgiil~GG~~~~~~~~~------~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v-~~~~~~~~~g~~~i~~ 126 (203)
++...+|||+||||.|-.-.+... +.+++.-. .+..|+| |+|+|+...+++|.. ..++ ....|......
T Consensus 57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~-~K~~Gvf~~~~ 135 (175)
T cd03131 57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLP-EKIFGVFPHTI 135 (175)
T ss_pred HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCC-CceEEEEEeee
Confidence 355558999999999875333221 22222222 4678999 999999999999986 5555 34456544333
Q ss_pred cccccccccccCCCCceEEeecccceeecCCC-CCCCeEEEE
Q 037843 127 NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF-RSDELEVTA 167 (203)
Q Consensus 127 ~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a 167 (203)
.. .++|++|+++.|.+-++|...|..+.+ ..+++++++
T Consensus 136 ~~---~hpL~~g~~d~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 136 LE---PHPLLRGLDDGFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred cC---CCccccCCCCceeecCcccccCCHHHHhhCCCCEEcc
Confidence 22 389999999999999888888865333 235666654
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti |
| >TIGR01001 metA homoserine O-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.9e-08 Score=78.19 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=105.8
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCce--EEEEeCCc---------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYH--FEVYRNDE---------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~--~~v~~~~~---------------~~~~~l~~~~~dgiil~GG 71 (203)
..+|+||+.-..- -..+.|.|... .+. ++.+.... .+.++++..++||+||||-
T Consensus 35 pL~I~ILNLMP~K~~TE~Q~lRlL~nt------plqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 35 PLEILILNLMPKKIETENQFLRLLSNS------PLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred ceeEEEEecCCccHHHHHHHHHHhcCC------CCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 3679999765422 23355555443 444 44333221 1456666668999999999
Q ss_pred CCCCC---CcchH---HHHHHHh-CCCCcee--ehhHHH-HHHHhCCeeccccccccccceeEEEcccccccccccCCCC
Q 037843 72 PGAPQ---ESGIS---FRTVLEL-GPTMPLF--CMGLKC-IGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSN 141 (203)
Q Consensus 72 ~~~~~---~~~~~---~~~i~~~-~~~~Pil--ClG~Ql-la~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~ 141 (203)
|-.-- +.+-+ .+++.-. .+-...| |+|.|. |....|-.-..++ ....|..+-... +.++|++|+.+
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~-~KlfGVf~h~~~---~~~pL~rGfdd 184 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLP-EKLSGVYKHDIA---PDSLLLRGFDD 184 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccC-CceEEeecCccC---CCCccccCCCC
Confidence 86422 22222 2333322 3556777 999999 5555676666665 345665332222 23789999998
Q ss_pred ceEEeecccceeecCCCC-CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 142 PFTAGRYHGLVIEKDSFR-SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 142 ~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.|.+-++..-.|..+.+. .++++++|.|+..-+..+..++++ -+=++.|||+...
T Consensus 185 ~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r-~vfi~GH~EYd~~ 240 (300)
T TIGR01001 185 FFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDER-NIFVTGHPEYDAY 240 (300)
T ss_pred ccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCC-EEEEcCCCccChh
Confidence 877765332235433332 268999999976656666667766 4559999998753
|
The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames. |
| >TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=88.42 Aligned_cols=183 Identities=13% Similarity=0.132 Sum_probs=107.0
Q ss_pred CCCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--Ccch------
Q 037843 10 NDKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--ESGI------ 80 (203)
Q Consensus 10 ~~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--~~~~------ 80 (203)
.+++||+|+-..+++ ......+|+.. |+.+..+...+.........+|++|+++||.+.-+ ..+.
T Consensus 1053 ~~~p~vail~~pG~N~~~e~~~Af~~a------Gf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i 1126 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDREMAAAFDRA------GFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSI 1126 (1310)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh------CCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHH
Confidence 457899999766555 45577888887 88877766433222221112689999999975321 1222
Q ss_pred -----HHHHHHH-h-CCCCcee--ehhHHHHHHH---hCCe-----ecccccc-ccccceeEEEcccccccccccCCCC-
Q 037843 81 -----SFRTVLE-L-GPTMPLF--CMGLKCIGEA---LEGR-----LYVLLLV-SCMGKALVYYNEKEEADGLLAGLSN- 141 (203)
Q Consensus 81 -----~~~~i~~-~-~~~~Pil--ClG~Qlla~a---~gg~-----v~~~~~~-~~~g~~~i~~~~~~~~~~lf~~~~~- 141 (203)
+.+.+++ + .++.++| |-|+|+|... +++. ..++..+ .+--|..+++.. .++.+|+++..
T Consensus 1127 ~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~--s~s~~~~~~~g~ 1204 (1310)
T TIGR01735 1127 LFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGE--SPSIMLRGMAGS 1204 (1310)
T ss_pred HhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECC--CCChhhhhcCCC
Confidence 1334444 3 5789999 9999999943 3332 2222211 111223444433 34677877653
Q ss_pred ceEEeecccce---eecC----CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 142 PFTAGRYHGLV---IEKD----SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 142 ~~~~~~~H~~~---v~~~----~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
.+.++-.|+.. +..+ .+...+...+-+ +.++ .|+++...+++ ++|...|||+...+
T Consensus 1205 ~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1205 RLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred EEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 46667777552 2211 122233333332 2222 48899999997 99999999998776
Q ss_pred CCC
Q 037843 199 EGK 201 (203)
Q Consensus 199 ~g~ 201 (203)
+..
T Consensus 1284 ~q~ 1286 (1310)
T TIGR01735 1284 WQN 1286 (1310)
T ss_pred hhC
Confidence 643
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. |
| >cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.4e-08 Score=75.10 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=58.3
Q ss_pred EEEEeCC-chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC-----cchHHHHHHH-
Q 037843 15 IVVIDNY-DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE-----SGISFRTVLE- 87 (203)
Q Consensus 15 i~iid~~-~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~-----~~~~~~~i~~- 87 (203)
|+|+++. .++..++.++++.. |+++++++... + +. ++|+|||+||.....+ ...+.+.|++
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~------G~~~~~~~~~~-~---~~--~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~ 68 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREP------GVDVRYVEVPE-G---LG--DADLIILPGSKDTIQDLAWLRKRGLAEAIKNY 68 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcC------CceEEEEeCCC-C---CC--CCCEEEECCCcchHHHHHHHHHcCHHHHHHHH
Confidence 5678885 67788888888888 99998887541 2 33 5799999888733211 1123455665
Q ss_pred hCCCCcee--ehhHHHHHHHhC
Q 037843 88 LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~g 107 (203)
..+++||| |.|+|+|++.+.
T Consensus 69 ~~~g~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 69 ARAGGPVLGICGGYQMLGKYIV 90 (194)
T ss_pred HHCCCcEEEECHHHHHhhhhcc
Confidence 46789999 999999999873
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. |
| >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=82.60 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=104.4
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcc-------cHHHHh--ccCCCEEEECCCCCCCCCc--
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDEL-------TVAELK--RKKPRGVVISPGPGAPQES-- 78 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-------~~~~l~--~~~~dgiil~GG~~~~~~~-- 78 (203)
.++||+|+-..+++ ..-..++|+.. |+.+..+...+. +.+++. ..++++|+++||.+.-+..
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~a------G~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~ 1049 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEKE------GAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDG 1049 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccch
Confidence 47899999776665 45577888887 888776654332 122221 1278999999998532221
Q ss_pred c-h----------HHHHHHH-hCCCCcee--ehhHHHHHHH--h-CCeec----------ccccc-ccccceeEEEcccc
Q 037843 79 G-I----------SFRTVLE-LGPTMPLF--CMGLKCIGEA--L-EGRLY----------VLLLV-SCMGKALVYYNEKE 130 (203)
Q Consensus 79 ~-~----------~~~~i~~-~~~~~Pil--ClG~Qlla~a--~-gg~v~----------~~~~~-~~~g~~~i~~~~~~ 130 (203)
+ . +.+.+.+ +.++.++| |-|+|+|... + ++++. ++..+ .+-.+..++.. .
T Consensus 1050 ~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~--~ 1127 (1239)
T TIGR01857 1050 SAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIA--S 1127 (1239)
T ss_pred hHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEEC--C
Confidence 1 1 2333444 36889999 9999999885 2 12222 11100 11112333332 2
Q ss_pred cccccccCCC--CceEEeecccce--e-ecC---CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEE
Q 037843 131 EADGLLAGLS--NPFTAGRYHGLV--I-EKD---SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLH 186 (203)
Q Consensus 131 ~~~~lf~~~~--~~~~~~~~H~~~--v-~~~---~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~ 186 (203)
..++++.++. ..+.+...|+.. + ..+ .|...+..++-+ +.++ .|+++...+++ ++
T Consensus 1128 ~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dGr-vl 1206 (1239)
T TIGR01857 1128 TNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGR-IF 1206 (1239)
T ss_pred CCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCCC-EE
Confidence 3477887764 346667777653 1 111 121223333222 2222 57899999987 99
Q ss_pred EEcCCCCCCCCC
Q 037843 187 GVQFHPESILTS 198 (203)
Q Consensus 187 gvQfHPE~~~~~ 198 (203)
|..-||||...+
T Consensus 1207 g~MpHpER~~~~ 1218 (1239)
T TIGR01857 1207 GKMGHSERYGDG 1218 (1239)
T ss_pred EECCCcccccCc
Confidence 999999998654
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. |
| >PLN03206 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=83.66 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=105.1
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccH--HHHhccCCCEEEECCCCC--CCCCcch-----
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTV--AELKRKKPRGVVISPGPG--APQESGI----- 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~--~~l~~~~~dgiil~GG~~--~~~~~~~----- 80 (203)
.++||+|+-..+++ ..-...+|+.. |+.+..+...+... ..+. ++++|+++||.+ +....+.
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~Af~~a------Gf~~~~V~~~dl~~~~~~L~--~~~glv~pGGFSyGD~l~sg~~wa~~ 1107 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAAFYAA------GFEPWDVTMSDLLNGRISLD--DFRGIVFVGGFSYADVLDSAKGWAGS 1107 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCceEEEEeeeccccccccc--ceeEEEEcCcCCCccccchHHHHHHH
Confidence 36899999766655 45577889887 88876665432211 1233 689999999984 3333331
Q ss_pred ------HHHHHHH-h-CCCCcee--ehhHHHHHHH--hC-Ce---------------ecccccc-ccccceeEEEccccc
Q 037843 81 ------SFRTVLE-L-GPTMPLF--CMGLKCIGEA--LE-GR---------------LYVLLLV-SCMGKALVYYNEKEE 131 (203)
Q Consensus 81 ------~~~~i~~-~-~~~~Pil--ClG~Qlla~a--~g-g~---------------v~~~~~~-~~~g~~~i~~~~~~~ 131 (203)
+.+.+++ + ..+.++| |-|+|+|... +. ++ ..++..+ .+--|..+++. ..
T Consensus 1108 i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~--~s 1185 (1307)
T PLN03206 1108 IRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIE--DS 1185 (1307)
T ss_pred HHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEEC--CC
Confidence 2334444 3 4589999 9999999885 21 11 1111100 11122334442 23
Q ss_pred ccccccCCCC-ceEEeecccce--e-ecC----CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEEE
Q 037843 132 ADGLLAGLSN-PFTAGRYHGLV--I-EKD----SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLHG 187 (203)
Q Consensus 132 ~~~lf~~~~~-~~~~~~~H~~~--v-~~~----~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~g 187 (203)
++.+|+++.. .+.++-.|+.. + ..+ .|...+...+-+ +.++ .|+++...+++ ++|
T Consensus 1186 ~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGR-vlg 1264 (1307)
T PLN03206 1186 PAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGR-HLA 1264 (1307)
T ss_pred CChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCC-EEE
Confidence 4677877653 46666667642 1 211 122233333322 2222 58899999997 999
Q ss_pred EcCCCCCCCCCCC
Q 037843 188 VQFHPESILTSEG 200 (203)
Q Consensus 188 vQfHPE~~~~~~g 200 (203)
...|||+...++.
T Consensus 1265 mMpHPER~~~~~q 1277 (1307)
T PLN03206 1265 MMPHPERCFLMWQ 1277 (1307)
T ss_pred EcCCHHHhhhhhh
Confidence 9999999887764
|
|
| >PRK05297 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=82.47 Aligned_cols=179 Identities=13% Similarity=0.154 Sum_probs=105.7
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccH--HHHhccCCCEEEECCCCCCCCC--cch-----
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTV--AELKRKKPRGVVISPGPGAPQE--SGI----- 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~--~~l~~~~~dgiil~GG~~~~~~--~~~----- 80 (203)
.++||+|+-..+++ ..-...+|+.. |+.+..+...+... ..+. ++++|+++||.+.-+. .+.
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~a------G~~~~~v~~~dl~~~~~~l~--~~~~l~~~GGFS~gD~lgsg~~~a~~ 1105 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDRA------GFDAIDVHMSDLLAGRVTLE--DFKGLVACGGFSYGDVLGAGEGWAKS 1105 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCCeEEEEeecCcCCCCChh--hCcEEEECCccCCcccchHHHHHHHH
Confidence 46899999766655 45677889887 88877665432222 1243 6899999999643221 221
Q ss_pred ------HHHHHHH-h-CCCCcee--ehhHHHHHHHhCC---------eecccccc-ccccceeEEEcccccccccccCCC
Q 037843 81 ------SFRTVLE-L-GPTMPLF--CMGLKCIGEALEG---------RLYVLLLV-SCMGKALVYYNEKEEADGLLAGLS 140 (203)
Q Consensus 81 ------~~~~i~~-~-~~~~Pil--ClG~Qlla~a~gg---------~v~~~~~~-~~~g~~~i~~~~~~~~~~lf~~~~ 140 (203)
+.+.+++ + .++.++| |-|+|+|... |. ++.++..+ .+--|..+++.. .++.+|+++.
T Consensus 1106 ~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l-g~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~--~~s~~~~~~~ 1182 (1290)
T PRK05297 1106 ILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL-KEIIPGAEHWPRFVRNRSEQFEARFSLVEVQE--SPSIFLQGMA 1182 (1290)
T ss_pred hhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh-CCccCCCCCCCeEeecCCCCeEEeeeEEEECC--CCChhHhhcC
Confidence 2344455 3 5789999 9999999986 21 11111101 111223444432 3467887765
Q ss_pred -CceEEeecccce--e-ecC---CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 -NPFTAGRYHGLV--I-EKD---SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 -~~~~~~~~H~~~--v-~~~---~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
..+.++-.|++. + ..+ .|...+...+-+ +.++ .|+++...+++ ++|...|||+...
T Consensus 1183 g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vlglMpHPEr~~~ 1261 (1290)
T PRK05297 1183 GSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGR-VTIMMPHPERVFR 1261 (1290)
T ss_pred CCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCC-EEEEcCChHHhcc
Confidence 346666667642 2 111 122223333222 2222 58899999997 9999999999987
Q ss_pred CCCC
Q 037843 198 SEGK 201 (203)
Q Consensus 198 ~~g~ 201 (203)
+|.-
T Consensus 1262 ~~q~ 1265 (1290)
T PRK05297 1262 TVQN 1265 (1290)
T ss_pred hhhc
Confidence 7653
|
|
| >cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.5e-06 Score=65.05 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=43.4
Q ss_pred HHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC-----CcchHHHHHHH-hCCCCcee--ehhHHH
Q 037843 30 QYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ-----ESGISFRTVLE-LGPTMPLF--CMGLKC 101 (203)
Q Consensus 30 ~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~-----~~~~~~~~i~~-~~~~~Pil--ClG~Ql 101 (203)
++|++. |+++.++... ..+++. ++|+|||+||..... ....+.+.|++ ..+++||+ |.|+|+
T Consensus 18 ~~l~~~------G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~ql 87 (198)
T cd03130 18 ELLEAA------GAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMY 87 (198)
T ss_pred HHHHHC------CCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHH
Confidence 456666 9988876531 112333 489999988743211 11123455666 46789999 999999
Q ss_pred HHHHh
Q 037843 102 IGEAL 106 (203)
Q Consensus 102 la~a~ 106 (203)
|++.+
T Consensus 88 L~~~~ 92 (198)
T cd03130 88 LGESL 92 (198)
T ss_pred HHHHh
Confidence 99875
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. |
| >PHA03366 FGAM-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0001 Score=72.08 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=58.4
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH-HhccCCCEEEECCCCCCCCCc--ch------
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAE-LKRKKPRGVVISPGPGAPQES--GI------ 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~-l~~~~~dgiil~GG~~~~~~~--~~------ 80 (203)
.++||+|+-..+.+ ......+|+.. |..+..+...+..... +. +|+||+++||.+.-+.. +.
T Consensus 1027 ~~prVaIl~~pG~N~~~e~~~Af~~a------Gf~~~~v~~~dL~~~~~l~--~f~glv~~GGFS~gD~l~~~~~~a~~i 1098 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPHALLAAFTNA------GFDPYPVSIEELKDGTFLD--EFSGLVIGGSSGAEDSYTGARAAVAAL 1098 (1304)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCceEEEEeecCCCCCccc--cceEEEEcCCCCCcccccHHHHHHHHh
Confidence 47899999766555 45577888888 8888777643332222 33 68999999998643222 11
Q ss_pred -----HHHHHHHh--CCCCcee--eh-hHHHHHHH
Q 037843 81 -----SFRTVLEL--GPTMPLF--CM-GLKCIGEA 105 (203)
Q Consensus 81 -----~~~~i~~~--~~~~Pil--Cl-G~Qlla~a 105 (203)
+.+.++++ .++.++| |- |+|+|+..
T Consensus 1099 l~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1099 LSNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred hhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 23445553 4689999 96 99999873
|
|
| >KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00032 Score=52.96 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCCcEEEEeCCchHHHH---HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC----CcchHH
Q 037843 10 NDKNPIVVIDNYDSFTYN---LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ----ESGISF 82 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~---l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~----~~~~~~ 82 (203)
+++.-|.|+...+.|... +.+.+.+- .-++.+.+.+. .+++++. ++|++||+||....- ....+.
T Consensus 9 Ktn~VIGVLALQGAFiEH~N~~~~c~~en----~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~ 80 (226)
T KOG3210|consen 9 KTNVVIGVLALQGAFIEHVNHVEKCIVEN----RYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLY 80 (226)
T ss_pred CcceEEeeeehhhHHHHHHHHHHHhhccC----cceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhH
Confidence 344556777776667543 33333221 00344444443 4677777 689999999975421 112244
Q ss_pred HHHHHh--CCCCcee--ehhHHHHHHHhCC
Q 037843 83 RTVLEL--GPTMPLF--CMGLKCIGEALEG 108 (203)
Q Consensus 83 ~~i~~~--~~~~Pil--ClG~Qlla~a~gg 108 (203)
+.+.++ ...+|++ |-||-+|..-+.+
T Consensus 81 d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 81 DDLYAFVHNPSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred HHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence 555554 3459999 9999999876543
|
|
| >TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=69.98 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=56.9
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccH-HHHhccCCCEEEECCCCCCCCC--cch------
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTV-AELKRKKPRGVVISPGPGAPQE--SGI------ 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-~~l~~~~~dgiil~GG~~~~~~--~~~------ 80 (203)
.++||+|+-..+.+ ......+|+.. |+.+..+...+... ..+. +++||+++||.+.-+. .+.
T Consensus 928 ~~p~VaIl~~pG~N~~~e~~~Af~~a------Gf~~~~v~~~dl~~~~~l~--~f~glv~~Ggfsy~D~lgsg~~~a~~i 999 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHGLLAALTNA------GFDPRIVSITELKKTDFLD--TFSGLIIGGASGTLDSEVGARALAAAL 999 (1202)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHc------CCceEEEEeccCCCCCchh--heEEEEEcCcCCCCccchHHHHHHHHh
Confidence 46889999665555 45677889888 98877776433221 1233 6899999888753221 221
Q ss_pred -----HHHHHHH-h-CCCCcee--eh-hHHHHHHH
Q 037843 81 -----SFRTVLE-L-GPTMPLF--CM-GLKCIGEA 105 (203)
Q Consensus 81 -----~~~~i~~-~-~~~~Pil--Cl-G~Qlla~a 105 (203)
+.+.+++ + .++.++| |- |+|+|+..
T Consensus 1000 l~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1000 LRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred hcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 2334444 3 4589999 96 99999984
|
This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model. |
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=3e-05 Score=68.48 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=48.2
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCC-CCCc-chHHHHHHHhCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGA-PQES-GISFRTVLELGP 90 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~-~~~~-~~~~~~i~~~~~ 90 (203)
+|.|+.-. ++.++++.+ |. .+.++.. .+++++. ++|+|||+||.-. ..+. ..+.+.++++
T Consensus 2 ~iGvlal~-----sv~~al~~l------g~~~~~vv~~--~~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~-- 64 (476)
T PRK06278 2 EIGLLDIK-----GSLPCFENF------GNLPTKIIDE--NNIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF-- 64 (476)
T ss_pred EEEEEehh-----hHHHHHHHh------cCCCcEEEEe--CChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--
Confidence 57888754 445667777 54 5555443 3466776 6799999887411 1111 1233444444
Q ss_pred CCcee--ehhHHHHHHHh
Q 037843 91 TMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~ 106 (203)
++||| |.|||||++..
T Consensus 65 g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 65 DGYIIGICSGFQILSEKI 82 (476)
T ss_pred CCeEEEEcHHHHhccccc
Confidence 79999 99999999865
|
|
| >cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=50.20 Aligned_cols=71 Identities=20% Similarity=0.401 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHH-HHhccCCCEEEECCCCCCCCCc---chHHHHHHH-hCCCCcee--ehh
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVA-ELKRKKPRGVVISPGPGAPQES---GISFRTVLE-LGPTMPLF--CMG 98 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~-~~~~~Pil--ClG 98 (203)
..+.+.++.. ++.+.+++....... .....++|++|++||....... ....+.+++ ..+++|++ |.|
T Consensus 15 ~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g 88 (115)
T cd01653 15 ASPLDALREA------GAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLG 88 (115)
T ss_pred HHHHHHHHHC------CCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECch
Confidence 4566777777 888888875422110 0112268999999998765543 344566666 46789999 999
Q ss_pred HHHH
Q 037843 99 LKCI 102 (203)
Q Consensus 99 ~Qll 102 (203)
+|++
T Consensus 89 ~~~l 92 (115)
T cd01653 89 AQLL 92 (115)
T ss_pred hHhH
Confidence 9999
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende |
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.3e-05 Score=67.39 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=53.2
Q ss_pred CCcEEEEeCC-chHHHHHHHHHHH-hhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-----hHHHH
Q 037843 12 KNPIVVIDNY-DSFTYNLCQYMGE-LELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-----ISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~-~~~~~~l~~~l~~-~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-----~~~~~ 84 (203)
+.+|+|+.+. ..+..++. .|+. . |+++.++.+ .+++. ++|+|+|+||........ .+.+.
T Consensus 251 ~~~i~v~~~~~a~~f~nl~-~l~~~~------g~~v~~~s~----~~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~ 317 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDFD-PLRAEP------GVDVRYVRP----GEPLP--DADLVILPGSKNTIADLAWLRESGWDEA 317 (488)
T ss_pred ceEEEEEeCCCcCCccChH-HHhhcC------CCeEEEECC----ccccc--cCCEEEECCccchHHHHHHHHHcCHHHH
Confidence 3589999733 22224444 4444 6 888877654 23454 579999988874322211 13455
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHh
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
|++ ...++||| |.|+|+|+..+
T Consensus 318 i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 318 IRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHcCCeEEEECHHHHHHhhhc
Confidence 666 46789999 99999999987
|
|
| >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00041 Score=55.27 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHhccCCCEEEECCCCCCCC---C----------cchHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 57 ELKRKKPRGVVISPGPGAPQ---E----------SGISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 57 ~l~~~~~dgiil~GG~~~~~---~----------~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
++...+||+|+|+||.+... + ...+.++++++ ++++||- |-|-++|+.++
T Consensus 80 ~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 80 EADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred HCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 33334799999999976431 1 22356777774 7889998 99999999887
|
|
| >COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00032 Score=56.30 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=81.2
Q ss_pred cHHHHhccCCCEEEECCCCCCCCCcc---hHH--HHHHHh-C-CCCcee--ehhHHHHHHHh-CCeecccccccccccee
Q 037843 54 TVAELKRKKPRGVVISPGPGAPQESG---ISF--RTVLEL-G-PTMPLF--CMGLKCIGEAL-EGRLYVLLLVSCMGKAL 123 (203)
Q Consensus 54 ~~~~l~~~~~dgiil~GG~~~~~~~~---~~~--~~i~~~-~-~~~Pil--ClG~Qlla~a~-gg~v~~~~~~~~~g~~~ 123 (203)
+.+++++.+|||+||+|.|--.-+.. .+. ..|.+. . +---.| |+|.|.--.++ |-.-..++ ....|.+.
T Consensus 91 tfeeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~-~Kl~GVy~ 169 (307)
T COG1897 91 TFEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLP-EKLSGVYK 169 (307)
T ss_pred cHHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccc-hhhhceee
Confidence 45677777899999999986432222 222 222222 2 223445 99999876654 54444444 23345422
Q ss_pred EEEcccccccccccCCCCceEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 124 VYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 124 i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
-.. ....+.+++|+.+.|.+-++..-.+..+.+ .-+++++++.|+..-+..+..++.+ -+=+-.|||+...
T Consensus 170 h~~--l~p~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r-~ifv~gH~EYD~~ 241 (307)
T COG1897 170 HDI--LSPHSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGR-NIFVTGHPEYDAT 241 (307)
T ss_pred ccc--cCccchhhccCCccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCC-eEEEeCCcchhhh
Confidence 221 122367899998877665433223332221 1257999999975555555666666 4556689998764
|
|
| >PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00039 Score=52.60 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCCEEEECCCCCCCCCcc-----hHHHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 62 KPRGVVISPGPGAPQESG-----ISFRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~-----~~~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
++|+|+|+||.-...+.. .+.+.|++ ..++.||+ |-|+|+|++.+-
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 689999988864333221 23556666 46789999 999999999774
|
Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process |
| >cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00023 Score=46.38 Aligned_cols=71 Identities=20% Similarity=0.396 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHH-HHhccCCCEEEECCCCCCCCCc---chHHHHHHH-hCCCCcee--ehh
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVA-ELKRKKPRGVVISPGPGAPQES---GISFRTVLE-LGPTMPLF--CMG 98 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~-~~~~~Pil--ClG 98 (203)
..+.+.++.. +..+.++........ .....++|++|++||...+... ....+.+.+ ..++.|++ |.|
T Consensus 15 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 88 (92)
T cd03128 15 ASPLDALREA------GAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLG 88 (92)
T ss_pred ecHHHHHHhC------CCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecc
Confidence 4566777777 888888765422211 1122378999999998876543 334555555 46679999 999
Q ss_pred HHHH
Q 037843 99 LKCI 102 (203)
Q Consensus 99 ~Qll 102 (203)
+|++
T Consensus 89 ~~~~ 92 (92)
T cd03128 89 AQLL 92 (92)
T ss_pred cccC
Confidence 9874
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin |
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=58.48 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=52.0
Q ss_pred CcEEEEeCCc-hH--HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-----chHHHH
Q 037843 13 NPIVVIDNYD-SF--TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-----GISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~-~~--~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-----~~~~~~ 84 (203)
.+|+|+-... .| ..++ +.|++. |+++..+.+. ..+++. ++|+|+|+||....... ..+.+.
T Consensus 245 ~~Iava~d~afnFy~~~~~-~~L~~~------g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~ 313 (449)
T TIGR00379 245 VRIAVAQDQAFNFYYQDNL-DALTHN------AAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDS 313 (449)
T ss_pred cEEEEEechhhceeHHHHH-HHHHHC------CCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHH
Confidence 5788884332 11 2333 356666 8988776541 112343 67999999987422211 113455
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHh
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
|++ ..++.||| |-|+|+|++.+
T Consensus 314 i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 314 IKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 665 46789999 99999999976
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00048 Score=60.70 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=53.2
Q ss_pred CcEEEEeCCc-hH--HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC-----CcchHHHH
Q 037843 13 NPIVVIDNYD-SF--TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ-----ESGISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~-~~--~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~-----~~~~~~~~ 84 (203)
.+|+|+-... .| ..++ +.|++. |+++..+++. ..+++. ++|+|||+||..... ....+.+.
T Consensus 246 ~~iava~d~af~f~y~e~~-~~L~~~------g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~ 314 (451)
T PRK01077 246 VRIAVARDAAFNFYYPENL-ELLRAA------GAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRAS 314 (451)
T ss_pred ceEEEEecCcccccHHHHH-HHHHHC------CCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHH
Confidence 5888884332 22 1233 456666 8888776541 122343 689999999964321 11224566
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHh
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
|++ ..+++||+ |-|+|+|+..+
T Consensus 315 i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 315 IRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 666 46789999 99999999987
|
|
| >cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=50.36 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+++||++... .......++++ +.+++||. |-|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 589999999975322 22345677777 47889999 9999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR01382 PfpI intracellular protease, PfpI family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0039 Score=47.06 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|+|+++||.+... ....+.++++++ .+++||. |-|.++|+.+
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 589999999976321 223467777774 6789999 9999999975
|
The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. |
| >COG3442 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0045 Score=48.81 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC------CcchHHHHHHH-hCCCCcee--ehh
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ------ESGISFRTVLE-LGPTMPLF--CMG 98 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~------~~~~~~~~i~~-~~~~~Pil--ClG 98 (203)
+.+..+.+ |+.+++++....+ .+....+|.+++.||. +.. +.....+-+++ .++++|+| |-|
T Consensus 26 Lr~ra~~r------gi~v~i~~vsl~d--~~~~~~~Dl~~~GGgq-D~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg 96 (250)
T COG3442 26 LRQRAEKR------GIKVEIVEVSLTD--TFPDDSYDLYFLGGGQ-DYEQEIATRDLLTKKEGLKDAIENGKPVLAICGG 96 (250)
T ss_pred ehHHHHhc------CCceEEEEeecCC--CCCcccccEEEecCch-HHHHHHHhhhhccccHHHHHHHhcCCcEEEEccc
Confidence 44556666 9999887653211 1222257888885553 221 11111234444 57889999 999
Q ss_pred HHHHHHH----hCCeecccc----------ccccccceeEEEcccccccccccCCCCceEEeecccceee-cCCCCCCCe
Q 037843 99 LKCIGEA----LEGRLYVLL----------LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIE-KDSFRSDEL 163 (203)
Q Consensus 99 ~Qlla~a----~gg~v~~~~----------~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~-~~~l~~~~~ 163 (203)
.|+|..+ .|-++..+. ..+..|...++.+..+ ..+.++..-+.+|+-.-. .+...|=|-
T Consensus 97 ~QlLG~yY~~a~G~ri~GlGiLd~~T~~~~~~R~IGdiv~~~~~~~------e~~~et~~GFENH~GrT~L~~d~~pLG~ 170 (250)
T COG3442 97 YQLLGQYYETASGTRIDGLGILDHYTENPQTKRFIGDIVIENTLAG------EEFGETLVGFENHGGRTYLGPDVKPLGK 170 (250)
T ss_pred hhhccceeecCCCcEeecccceeeeeccccccceeeeEEeecccch------HHhCCeeeeeecCCCceecCCCCcccee
Confidence 9999875 344444331 0112233222221110 113345555667754321 111122344
Q ss_pred EEEEEcCC--CcEEEEEeCCCCcEEEEcCC
Q 037843 164 EVTAWTED--GLIMAARHKKYKHLHGVQFH 191 (203)
Q Consensus 164 ~~~a~s~~--~~v~a~~~~~~~~i~gvQfH 191 (203)
.+.+..++ .-.+++.+++ ++|+=||
T Consensus 171 Vv~G~GNn~eD~~eG~~ykn---~~aTY~H 197 (250)
T COG3442 171 VVYGYGNNGEDGTEGAHYKN---VIATYFH 197 (250)
T ss_pred EEEccCCCccccccceeeee---eEEEeec
Confidence 55554432 2356666664 8999998
|
|
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0022 Score=50.87 Aligned_cols=87 Identities=9% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCCCcEEEEeCCch----HHHHHHHHHHHhhhhhcCCceEEEEeCCc-cc-HHHHhccCCCEEEECCCCCCCCCc-----
Q 037843 10 NDKNPIVVIDNYDS----FTYNLCQYMGELELELSQGYHFEVYRNDE-LT-VAELKRKKPRGVVISPGPGAPQES----- 78 (203)
Q Consensus 10 ~~~~~i~iid~~~~----~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~-~~~l~~~~~dgiil~GG~~~~~~~----- 78 (203)
+..++|++|...+. +..++.++++.+. |+.+..+.... .. .+.+. +.|+|+++|| +....
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~-----G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~ 99 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLR-----GVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWR 99 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhcc-----CcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHH
Confidence 34688999965543 3444555555541 66666654211 12 34444 6799999886 33211
Q ss_pred -chHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 79 -GISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 79 -~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
..+.+.|++ +.+++|++ |.|+|+++..
T Consensus 100 ~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 100 EHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 123455665 46789999 9999999975
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0068 Score=45.66 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=33.3
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
++|+|+++||++... ....+.++|++ ..+++||. |-|.++|+.+
T Consensus 62 ~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 62 DYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 589999999974321 23446777877 46889998 9999999975
|
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. |
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.014 Score=51.22 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCCEEEECCCCCCCCCc----chHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPGPGAPQES----GISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~----~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
++|+|+|+||.-...+. ....+.|++ ..++.||+ |-|+|+|++.+
T Consensus 274 ~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 274 DCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 57999999987433221 111245555 46789999 99999999976
|
|
| >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0055 Score=48.65 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHhccCCCEEEECCCCCCC---CC----------cchHHHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 56 AELKRKKPRGVVISPGPGAP---QE----------SGISFRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 56 ~~l~~~~~dgiil~GG~~~~---~~----------~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
+++...+||+|+|+||.+.. .+ ...+.+++++ .++++||. |-|-++|+.+.+
T Consensus 76 ~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 76 AKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred HHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 34333369999999997542 11 2235677777 47889998 999999999874
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. |
| >cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0066 Score=44.66 Aligned_cols=87 Identities=18% Similarity=0.083 Sum_probs=54.0
Q ss_pred CcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCCC
Q 037843 13 NPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 13 ~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~~ 75 (203)
++|+|+-+.+.. ...+.+.|+.. |+++.++.... .+.++....+||+|+++||.+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a------~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~ 75 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAA------GANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA 75 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHC------CCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH
Confidence 467777443322 22345666666 78877764321 01122222258999999987643
Q ss_pred C---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 76 Q---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 76 ~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
. ....+.+++++ ..+++||. |-|-.+|+.+
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 76 FALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred HHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 2 33456778877 46789998 9999999974
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C |
| >KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.025 Score=52.92 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=96.9
Q ss_pred CCCCcEEEEeCCchHHHH-HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--Cc--ch----
Q 037843 10 NDKNPIVVIDNYDSFTYN-LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--ES--GI---- 80 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~-l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--~~--~~---- 80 (203)
++.|||+||--.+.+.+. +..+|... |.+..-+..-+.-.......+|-||+++||..-.+ .. ++
T Consensus 1056 s~~PkVAilREeGvNg~rEMa~af~~A------gF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasi 1129 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAA------GFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASI 1129 (1320)
T ss_pred cCCCceEEeeccccccHHHHHHHHHHc------CCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhhe
Confidence 346899999766655443 45566666 76643222111111111111578999999985322 11 11
Q ss_pred -----HHHHHHHhCCCCcee----ehhHHHHHHH--hCCeeccccc----cccccc-----eeEEEcccccccccccCCC
Q 037843 81 -----SFRTVLELGPTMPLF----CMGLKCIGEA--LEGRLYVLLL----VSCMGK-----ALVYYNEKEEADGLLAGLS 140 (203)
Q Consensus 81 -----~~~~i~~~~~~~Pil----ClG~Qlla~a--~gg~v~~~~~----~~~~g~-----~~i~~~~~~~~~~lf~~~~ 140 (203)
......++.++.-.| |-|.|+|+.. .|-.+...+. ..+.+. ..+++. ...+-++.++.
T Consensus 1130 l~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~--~~~SIml~gM~ 1207 (1320)
T KOG1907|consen 1130 LFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIE--SNVSIMLSGMA 1207 (1320)
T ss_pred eeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeC--CCchhhhcccc
Confidence 122333343444455 9999999984 3333333221 111222 233333 22244556654
Q ss_pred -CceEEeeccccee---ecC----CCCCCCeEEEEEcC-------------CC---cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 141 -NPFTAGRYHGLVI---EKD----SFRSDELEVTAWTE-------------DG---LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 141 -~~~~~~~~H~~~v---~~~----~l~~~~~~~~a~s~-------------~~---~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
..+-++..|+..= ..+ .+..+++..+-+-+ ++ -|.++...+.+ .++..=||||..
T Consensus 1208 gs~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGR-hLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1208 GSVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGR-HLAMMPHPERVF 1286 (1320)
T ss_pred CCceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCC-eeeccCCchhee
Confidence 3566777776542 111 23334554444321 22 47889999988 899999999986
Q ss_pred CCCC
Q 037843 197 TSEG 200 (203)
Q Consensus 197 ~~~g 200 (203)
.-|.
T Consensus 1287 l~~q 1290 (1320)
T KOG1907|consen 1287 LMWQ 1290 (1320)
T ss_pred eeee
Confidence 5443
|
|
| >cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0087 Score=48.13 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=34.8
Q ss_pred cCCCEEEECCCCCCCCC---cchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 61 KKPRGVVISPGPGAPQE---SGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~---~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+||+|+|+||.+...+ ...+.++++++ ++++||- |-|-++|+.+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 37999999999775433 33456777774 6788998 9999999886
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. |
| >PRK11574 oxidative-stress-resistance chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.029 Score=43.56 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=34.0
Q ss_pred HHHHhccCCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHH
Q 037843 55 VAELKRKKPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 55 ~~~l~~~~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~ 104 (203)
.+++...++|.|+++||.+.+. +...+.++++++ .++++|. |-|-.+|..
T Consensus 59 l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 59 LVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred HHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 3443323689999999865432 233467788774 6788998 999987554
|
|
| >COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.024 Score=43.67 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=35.1
Q ss_pred CCCEEEECCC-CCCCCCc--chHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPG-PGAPQES--GISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG-~~~~~~~--~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
+||+|+++|| .+..... ..+.++++++ ..++||. |-|-++|+.+-
T Consensus 66 ~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 66 DYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred HCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 7899999999 5544333 3567788884 6789999 99999999763
|
|
| >PRK05282 (alpha)-aspartyl dipeptidase; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.025 Score=45.51 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCcEEEEeCCc------hHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC----CcchH
Q 037843 12 KNPIVVIDNYD------SFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ----ESGIS 81 (203)
Q Consensus 12 ~~~i~iid~~~------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~----~~~~~ 81 (203)
.++|++|..-+ .+...+.++++++ |+.+..++..+...+.+. +.|+|+++||-.... ....+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~l------G~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl 102 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPL------GIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGL 102 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHC------CCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCc
Confidence 58899995443 2455677788888 999877754321223344 579999998843211 11123
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
.+.|++ +.+++|++ |-|.-+++....
T Consensus 103 ~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 103 LAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 455555 56789999 999988877544
|
|
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0042 Score=55.18 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred CCCEEEECCCCCCCCCcc-----hHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPGPGAPQESG-----ISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~-----~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
++|+|+|+||.....+.. .+.+.|++ ...+.||| |.|||+|++.+
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 679999988863222211 13455666 46789999 99999999975
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.017 Score=50.92 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=38.4
Q ss_pred CceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-----chHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 42 GYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-----GISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-----~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
++++.+++.. +++. ++|.|||+|+-....|- ..+.+.+.+ ..++.||+ |-|||||...+
T Consensus 276 ~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 276 DVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence 7788777542 3444 47999997765444332 123334444 45689999 99999998764
|
|
| >PRK04155 chaperone protein HchA; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.052 Score=45.12 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=34.0
Q ss_pred cCCCEEEECCCCCCCCC---cchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 61 KKPRGVVISPGPGAPQE---SGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~---~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+||+|+|+||.+...+ ...+.+++++ .++++||- |-|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 47999999999876443 3345677777 47789998 9999877763
|
|
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.046 Score=50.92 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=55.0
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~ 74 (203)
+++|+||-..+.. ...+.++|+.. |+.+.++-... .+.++.....||+|+|+||...
T Consensus 597 gRKIaILVaDG~d~~ev~~~~daL~~A------Ga~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~ 670 (752)
T PRK11249 597 GRKVAILLNDGVDAADLLAILKALKAK------GVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN 670 (752)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchh
Confidence 4678777443322 23355666666 77777664310 1122222225899999998654
Q ss_pred CC---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 75 PQ---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ~~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+. .......+|++ +.+.++|- |-|.++|+.+
T Consensus 671 ~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 671 IADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 32 23456777877 57889998 9999999974
|
|
| >PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0078 Score=44.69 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=38.1
Q ss_pred ccHHHHhccCCCEEEECCCCCCCC----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 53 LTVAELKRKKPRGVVISPGPGAPQ----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 53 ~~~~~l~~~~~dgiil~GG~~~~~----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+.+++...+||+|||+||.+.+. +...+.++++++ .+++||- |-|-.+|+.+
T Consensus 28 ~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 28 KTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 455666655799999999987432 224567888884 6789998 9999988876
|
Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C .... |
| >cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.033 Score=42.33 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=33.1
Q ss_pred CCCEEEECCCCCCC-CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP-QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~-~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+|+||.... .....+.++|+++ .++++|. |-|.++|+.+
T Consensus 60 ~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 60 DYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 68999999996522 2233467778874 6778888 9999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown | Back alignment and domain information |
|---|
Probab=95.27 E-value=1 Score=38.70 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=68.3
Q ss_pred CCCEEEECCCCCCCCCc---chHHHHHHHh-CCCCcee--ehhHHHHHHHh----CCe---ecccc-----cc-------
Q 037843 62 KPRGVVISPGPGAPQES---GISFRTVLEL-GPTMPLF--CMGLKCIGEAL----EGR---LYVLL-----LV------- 116 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~---~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~----gg~---v~~~~-----~~------- 116 (203)
+++.+|++||.+.++.. +.-.+.|+++ .++--.| |.|.-.-+... |.. |.... .+
T Consensus 49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~ 128 (367)
T PF09825_consen 49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAF 128 (367)
T ss_pred CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccc
Confidence 68999999998776532 2225667774 5677788 99988776531 221 11000 00
Q ss_pred ------ccccceeEEEcccccccccccCCCCceEEeecccceeec-CCCCCCCeEEEEEcCC--------C--cEEEEEe
Q 037843 117 ------SCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEK-DSFRSDELEVTAWTED--------G--LIMAARH 179 (203)
Q Consensus 117 ------~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~-~~l~~~~~~~~a~s~~--------~--~v~a~~~ 179 (203)
.+.|...+.+... .. ...+..+.++.+.+-.+.. +.. +.+.+++|+-.+ . .+-..+.
T Consensus 129 ~gf~Y~se~Gara~~l~~~---~~--~~~~~~~~~yynGG~~Fv~~~~~-~~~v~vLA~Y~~~~~v~~~~~~aAvV~c~v 202 (367)
T PF09825_consen 129 PGFQYNSESGARAVKLKVN---DS--QAVPSEFSSYYNGGGVFVDADKY-DKNVEVLARYEDDLDVPGGEGKAAVVYCKV 202 (367)
T ss_pred cCCccCCCCCeEeEEEEec---CC--CCCCceeEEEECCceEEeCcccc-CCCeEEEEEEecCCCCCCCCCCcEEEEEEe
Confidence 1112211111111 00 1234555555544444432 222 368899998643 1 1233345
Q ss_pred CCCCcEEEEcCCCCCCC
Q 037843 180 KKYKHLHGVQFHPESIL 196 (203)
Q Consensus 180 ~~~~~i~gvQfHPE~~~ 196 (203)
.+.. ++-+-.|||...
T Consensus 203 GkG~-aiLsG~HpE~~~ 218 (367)
T PF09825_consen 203 GKGR-AILSGPHPEFSP 218 (367)
T ss_pred CCce-EEEEecccccCh
Confidence 5555 888999999974
|
It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| >cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31) | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.092 Score=42.24 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCCC---cchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQE---SGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~---~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+++||.+...+ ...+.++++++ ++++||- |-|-++|..+
T Consensus 96 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 96 EYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 7999999999776543 23456777774 6788888 9999977764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer. |
| >cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1 | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.063 Score=40.09 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+++||.+... +...+.++++++ .++++|. |-|..+|+.+
T Consensus 60 ~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 60 DYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 789999999873322 344567788774 6778888 9999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly |
| >cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.19 Score=39.57 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=55.2
Q ss_pred CCCcEEEEeCCc----hHHHHHHHHHHHhhhhhcCCceEEEEeCCc--ccH---HHHhccCCCEEEECCCCCCCC-----
Q 037843 11 DKNPIVVIDNYD----SFTYNLCQYMGELELELSQGYHFEVYRNDE--LTV---AELKRKKPRGVVISPGPGAPQ----- 76 (203)
Q Consensus 11 ~~~~i~iid~~~----~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~--~~~---~~l~~~~~dgiil~GG~~~~~----- 76 (203)
..++|++|...+ .+...+.++++.+ |+.+..+.... .+. +.+. +.|+|+++||.-...
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~l------G~~~~~~~~~~~~~~~~~~~~l~--~ad~I~~~GG~~~~~~~~l~ 99 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERL------GVEVVHLLLIDTANDPDVVARLL--EADGIFVGGGNQLRLLSVLR 99 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHc------CCceEEEeccCCCCCHHHHHHHh--hCCEEEEcCCcHHHHHHHHH
Confidence 468999997665 3456677888888 88877654321 112 2233 679999988743211
Q ss_pred CcchHHHHHHHhCCCCcee--ehhHHHHHHH
Q 037843 77 ESGISFRTVLELGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 77 ~~~~~~~~i~~~~~~~Pil--ClG~Qlla~a 105 (203)
..+....+++.+.++.|+. |-|..+++..
T Consensus 100 ~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 100 ETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 1112223333355778999 9999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from |
| >cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.035 Score=44.24 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+|+||.+... +...+.++++++ .++++|. |-|-++|+.+
T Consensus 90 ~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 90 DYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 689999999976433 234467888774 6788888 9999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different |
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.59 Score=40.88 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=72.3
Q ss_pred CcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC-----CcchHHH
Q 037843 13 NPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ-----ESGISFR 83 (203)
Q Consensus 13 ~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~-----~~~~~~~ 83 (203)
.||+|..-. .| ..|+ +.|++. |++++.+.+- .-+++.+ ++|+|.|+||.=-.+ +.....+
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl-~~Lr~~------GAelv~FSPL--~D~~lP~-~~D~vYlgGGYPElfA~~L~~n~~~~~ 314 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENL-ELLREA------GAELVFFSPL--ADEELPP-DVDAVYLGGGYPELFAEELSANESMRR 314 (451)
T ss_pred ceEEEEecc-hhccccHHHH-HHHHHC------CCEEEEeCCc--CCCCCCC-CCCEEEeCCCChHHHHHHHhhCHHHHH
Confidence 578888422 22 3333 467777 9998776431 2234443 479999988852211 1222466
Q ss_pred HHHHh-CCCCcee--ehhHHHHHHHh---CCeeccccc---------cc--cccceeEEEcccccccccccCCCCceEEe
Q 037843 84 TVLEL-GPTMPLF--CMGLKCIGEAL---EGRLYVLLL---------VS--CMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 84 ~i~~~-~~~~Pil--ClG~Qlla~a~---gg~v~~~~~---------~~--~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
.|+++ +.++||+ |-|+--|++.+ .|+...+.. .. ..|...+.... +.++..-...++-+
T Consensus 315 ~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~~~~~~~----d~~~~~~G~~irGH 390 (451)
T COG1797 315 AIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYREAEAVD----DTLLLRAGEKIRGH 390 (451)
T ss_pred HHHHHHHcCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhccceeEEEecC----CcccccCCceeeee
Confidence 67774 6789999 99999999876 333333320 01 12333333322 33444444567777
Q ss_pred ecccceeec
Q 037843 147 RYHGLVIEK 155 (203)
Q Consensus 147 ~~H~~~v~~ 155 (203)
.+|.-.+..
T Consensus 391 EFHyS~~~~ 399 (451)
T COG1797 391 EFHYSRLIT 399 (451)
T ss_pred eeeeeeccc
Confidence 777666643
|
|
| >PRK05568 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=1 Score=32.76 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=36.1
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCC
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~ 72 (203)
.+++|+ ....+++..+++.+.+... ..|+.+++++..+.+..++. ++|+||| |.|
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~--~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp 57 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAK--ENGAEVKLLNVSEASVDDVK--GADVVAL-GSP 57 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHH--HCCCeEEEEECCCCCHHHHH--hCCEEEE-ECC
Confidence 345554 6667888888877755321 22788888876555556665 5799999 544
|
|
| >cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.13 Score=39.50 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=33.9
Q ss_pred CCCEEEECCCCCCC--CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP--QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~--~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+++||.+.. .+...+.++++++ .++++|. |-|-++|+.+
T Consensus 64 ~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 64 AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 68999999986653 2234467788874 6778888 9999999985
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK11104 hemG protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.57 Score=35.95 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=44.9
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC-cchHHHHHHHh---
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE-SGISFRTVLEL--- 88 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~-~~~~~~~i~~~--- 88 (203)
+++|+ ....+.+.-+++++.+... . |..+++++..+....++. +||.||| |+|-.... ...+..++.+.
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~--~-g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~ 75 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELK--E-GIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQ 75 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhC--C-CCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHH
Confidence 45554 6666788888888866521 2 567777765433333444 5899999 54432222 22333444332
Q ss_pred CCCCcee--ehh
Q 037843 89 GPTMPLF--CMG 98 (203)
Q Consensus 89 ~~~~Pil--ClG 98 (203)
-.++|+. |.|
T Consensus 76 l~~K~v~~F~v~ 87 (177)
T PRK11104 76 LNQMPSAFFSVN 87 (177)
T ss_pred hCCCeEEEEEec
Confidence 2568887 666
|
|
| >cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP) | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.26 Score=35.15 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCCEEEECCCCCCCC-----CcchHHHHHHH-hCCCCcee--ehhHHHH
Q 037843 62 KPRGVVISPGPGAPQ-----ESGISFRTVLE-LGPTMPLF--CMGLKCI 102 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-----~~~~~~~~i~~-~~~~~Pil--ClG~Qll 102 (203)
++|.||++||..... ..+ .+.|++ ..+++|+| |+|.-+.
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g--~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKG--NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhC--cHHHHHHHHCCCcEEEEecCccce
Confidence 689999988543211 112 455565 46789999 9998776
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved. |
| >TIGR01383 not_thiJ DJ-1 family protein | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.13 Score=39.11 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCEEEECCCCCCC---CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP---QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~---~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+|+||.... .+...+.+++++. .++++|. |-|-.+|+.+
T Consensus 63 ~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 63 EFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred cCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 68999999885322 2334467788874 6778888 9999999986
|
This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. |
| >PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A | Back alignment and domain information |
|---|
Probab=92.61 E-value=2.8 Score=32.99 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=66.5
Q ss_pred cEEEEeCC-chHH----HHHHHHHHHhhhhhcCCceEEEEeC-CcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 14 PIVVIDNY-DSFT----YNLCQYMGELELELSQGYHFEVYRN-DELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~-~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~-~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
|||||.-. .++. ....++|+.++.+ ..++++++... +..+.+.|. ++|.||+....+..- .....+.+++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~-~~~~~v~~~~~~~~~~~~~L~--~~Dvvv~~~~~~~~l-~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEE-SEGFEVTVTEDPDDLTPENLK--GYDVVVFYNTGGDEL-TDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHH-TTCEEEEECCSGGCTSHHCHC--T-SEEEEE-SSCCGS--HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhcc-CCCEEEEEEeCcccCChhHhc--CCCEEEEECCCCCcC-CHHHHHHHHH
Confidence 67888554 2221 1223334333211 23888877542 223455554 789999876654221 2222344555
Q ss_pred -hCCCCcee-eh-hH-------HHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEee--cccceeec
Q 037843 88 -LGPTMPLF-CM-GL-------KCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGR--YHGLVIEK 155 (203)
Q Consensus 88 -~~~~~Pil-Cl-G~-------Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~--~H~~~v~~ 155 (203)
++++.+++ .- +. .-....+||.....+ .. .+..+....+.+|+.++++..|.+.- |....
T Consensus 77 ~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~---~~--~~~~v~~~~~~HPi~~gl~~~f~~~DE~Y~~~~--- 148 (217)
T PF06283_consen 77 YVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHP---PP--QPFTVRVEDPDHPITRGLPESFTIYDEWYYFLR--- 148 (217)
T ss_dssp HHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEE---CE--EEEEEEESSTTSCCCTTS-SEEEEEEEEEES-B---
T ss_pred HHHcCCCEEEEcccccccchhHHHHHHeeCccccCCC---CC--ceEEEEEcCCCChhhcCCCCCceEccccccccc---
Confidence 46789998 32 22 123445666543322 11 23333333445999999987776631 11111
Q ss_pred CCCCCCCeEEEEEcC
Q 037843 156 DSFRSDELEVTAWTE 170 (203)
Q Consensus 156 ~~l~~~~~~~~a~s~ 170 (203)
.+.++..+|++..
T Consensus 149 --~~~~~~~vL~~~~ 161 (217)
T PF06283_consen 149 --DPRPNVTVLLTAD 161 (217)
T ss_dssp --S---CEEEEEEEE
T ss_pred --CCCCCEEEEEEEE
Confidence 1334688887764
|
|
| >PRK05569 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.9 Score=33.11 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=35.5
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCC
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~ 72 (203)
.+|+|+ ....+++..+++.+.+...+ .|+.+++++....+..++. ++|+|+| |.|
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~--~g~~v~~~~~~~~~~~~~~--~~d~iil-gsP 57 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKE--AGAEVTIKHVADAKVEDVL--EADAVAF-GSP 57 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHh--CCCeEEEEECCcCCHHHHh--hCCEEEE-ECC
Confidence 456555 55567888888777553211 2778877765545556666 5799999 554
|
|
| >PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.32 Score=34.31 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=47.9
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||........+.-.|+=+ |.++..+...... ........+++++..|... ......+.+.+.....|
T Consensus 1 kILvIddd~~R~~~L~~ILeFl------Ge~~~~~~~~~~~-~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~P 71 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFL------GEQCEAVSSSDWS-QADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIP 71 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhc------CCCeEEecHHHHH-HhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCC
Confidence 6999998887788888888888 9998887543221 1122235677766555433 11122233333356799
Q ss_pred eeehhHHH
Q 037843 94 LFCMGLKC 101 (203)
Q Consensus 94 ilClG~Ql 101 (203)
+|.+|-+.
T Consensus 72 vlllg~~~ 79 (109)
T PF06490_consen 72 VLLLGEHD 79 (109)
T ss_pred EEEECCCC
Confidence 99655443
|
g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO). |
| >cd00886 MogA_MoaB MogA_MoaB family | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.2 Score=33.25 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--c--CCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--K--KPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~--~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
.+++...+.+++++. |+++..+..-..+.+++ .. . .+|.||.+||.+ +.+.+...+.+.+
T Consensus 18 ~d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s-~g~~D~t~~al~~ 85 (152)
T cd00886 18 EDRSGPALVELLEEA------GHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG-LAPRDVTPEATRP 85 (152)
T ss_pred ccchHHHHHHHHHHc------CCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCCCcCcHHHHHH
Confidence 456677888999999 88765443111122322 21 1 589999998854 4444544455555
|
Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers. |
| >cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.24 Score=38.27 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCCEEEECCCCCCCC-----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ-----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+|+||.+... ....+.+++++. .++++|. |-|..+|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 689999999865432 233467778774 6778888 9999999974
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.5 Score=33.29 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCcEEEEe-------CCchHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc----cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVID-------NYDSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR----KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid-------~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~----~~~dgiil~GG~~~~~ 76 (203)
+++|.||- -.+++...+..++++. |+++..+. .|+.. .+.+.. .++|.||.+||.| +.
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~------G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg-~g 76 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEA------GHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG-FT 76 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHC------CCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CC
Confidence 35666652 3456677888889998 88765432 23211 122211 2589999999865 33
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 77 ~~D~t~eal~~ 87 (163)
T TIGR02667 77 GRDVTPEALEP 87 (163)
T ss_pred CCCCcHHHHHH
Confidence 34433444444
|
This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. |
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.93 Score=30.92 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=47.3
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
|+|+|........+.++++.. |+ .+........-...+....+|.+++.-.... .+...+.+.|+....+.|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~------~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA------GYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT------TEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSE
T ss_pred cEEEECCHHHHHHHHHHHHhC------CCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-cccccccccccccccccc
Confidence 689999888888899999977 88 6665432111233344457899999433221 122234566666567889
Q ss_pred ee
Q 037843 94 LF 95 (203)
Q Consensus 94 il 95 (203)
++
T Consensus 74 ii 75 (112)
T PF00072_consen 74 II 75 (112)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.33 Score=36.92 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+|+||++||.+... ....+.+++++ ..++++|. |-|..+|+.+
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 689999999865432 23446788887 46788888 9999999874
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.32 Score=36.52 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCEEEECCCCC--CCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPG--APQESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~--~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++||++ .......+.+++++. .++.+|. |-|..+|+.+
T Consensus 61 ~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 61 DFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred cCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 689999999987 122334466777764 6778888 9999999986
|
... |
| >KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.5 Score=35.21 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=28.2
Q ss_pred cCCCEEEECCC-CCCCC--CcchHHHHHHHh-CCCCcee--ehhH
Q 037843 61 KKPRGVVISPG-PGAPQ--ESGISFRTVLEL-GPTMPLF--CMGL 99 (203)
Q Consensus 61 ~~~dgiil~GG-~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~ 99 (203)
..||.|||+|| +|.-. +.....+++++. ..+++|. |-|=
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap 110 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAP 110 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecch
Confidence 58999999999 76533 344556777775 4667777 9875
|
|
| >cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.7 Score=35.32 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=32.9
Q ss_pred CCCEEEECCCCCCCC-CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ-ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|||+||.+... ....+.+++++. .+++.|. |-|..+|+.+
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 689999999865432 233467778774 6778888 9999999974
|
A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee |
| >PRK06756 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=7.1 Score=28.61 Aligned_cols=78 Identities=9% Similarity=-0.007 Sum_probs=42.4
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCC-CCCcc-hHHHHHHHh
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGA-PQESG-ISFRTVLEL 88 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~-~~~~~-~~~~~i~~~ 88 (203)
++|+|| ....+++..+++.+.+... ..|+.+++.+..+. ...++. ++|+|+| |.|-. ..... .+..++..+
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~--~~g~~v~~~~~~~~~~~~~~~--~~d~vi~-gspt~~~g~~p~~~~~fl~~l 76 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIR--ETENEIEVIDIMDSPEASILE--QYDGIIL-GAYTWGDGDLPDDFLDFYDAM 76 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHh--hcCCeEEEeehhccCCHHHHh--cCCeEEE-EeCCCCCCCCcHHHHHHHHHH
Confidence 467666 5566778877776655321 12777777654322 234554 6799998 43321 11222 244444432
Q ss_pred ----CCCCcee
Q 037843 89 ----GPTMPLF 95 (203)
Q Consensus 89 ----~~~~Pil 95 (203)
-+++|+.
T Consensus 77 ~~~~l~~k~~~ 87 (148)
T PRK06756 77 DSIDLTGKKAA 87 (148)
T ss_pred hcCCCCCCEEE
Confidence 2567776
|
|
| >smart00852 MoCF_biosynth Probable molybdopterin binding domain | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.5 Score=30.64 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEE---EeCCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEV---YRNDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+.+++++. |+++.. ++ |+.. .+.+.. .++|.||.+||.+ +...+...+.++++
T Consensus 17 d~~~~~l~~~l~~~------G~~~~~~~~v~-Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~~ 82 (135)
T smart00852 17 DSNGPALAELLTEL------GIEVTRYVIVP-DDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAEA 82 (135)
T ss_pred cCcHHHHHHHHHHC------CCeEEEEEEeC-CCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHHH
Confidence 55667888899998 876543 33 3211 122221 2589999999976 44455555555554
|
This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation. |
| >TIGR02069 cyanophycinase cyanophycinase | Back alignment and domain information |
|---|
Probab=87.79 E-value=2.5 Score=34.39 Aligned_cols=93 Identities=11% Similarity=0.121 Sum_probs=54.0
Q ss_pred cccCCCCCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCc-eEEEEeCCcc----cHHHHhc-cCCCEEEECCCCCCC
Q 037843 6 KLSKNDKNPIVVIDNYDSF----TYNLCQYMGELELELSQGY-HFEVYRNDEL----TVAELKR-KKPRGVVISPGPGAP 75 (203)
Q Consensus 6 ~~~~~~~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~----~~~~l~~-~~~dgiil~GG~~~~ 75 (203)
.+..+..+||++|-..+.. .....++++.+ |+ .+.++..... +++.+.. .+.|+|+++||--..
T Consensus 22 ~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~l------G~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~ 95 (250)
T TIGR02069 22 SRAGGEDAIIVIITSASEEPREVGERYITIFSRL------GVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLR 95 (250)
T ss_pred HHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHc------CCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHH
Confidence 4445556899999654432 34556677777 88 4666554211 1221111 267999999985321
Q ss_pred ----CCcchHHHHHHH-hCCCCcee--ehhHHHHHH
Q 037843 76 ----QESGISFRTVLE-LGPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 76 ----~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~ 104 (203)
.....+...|++ +.++.|+. --|.-+|+.
T Consensus 96 l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 96 ITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred HHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 112224455655 56778888 777777654
|
This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. |
| >PRK03673 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=4.6 Score=35.22 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------cCCCEEEECCCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR------KKPRGVVISPGPGA 74 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~~~dgiil~GG~~~ 74 (203)
+++...+.+.++++ |+++.....-..+.+++.. .++|.||++||-|.
T Consensus 20 dtN~~~la~~L~~~------G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGp 72 (396)
T PRK03673 20 DTNAAWLADFFFHQ------GLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGP 72 (396)
T ss_pred EhHHHHHHHHHHHC------CCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCC
Confidence 45677788899998 9887543211112333321 26899999999764
|
|
| >cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase | Back alignment and domain information |
|---|
Probab=86.87 E-value=3.4 Score=32.73 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=52.2
Q ss_pred cCCCCCcEEEEeCCc----hHHHHHHHHHHHhhhhhcCCce-EEEEeCCc----ccH---HHHhccCCCEEEECCCCCCC
Q 037843 8 SKNDKNPIVVIDNYD----SFTYNLCQYMGELELELSQGYH-FEVYRNDE----LTV---AELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 8 ~~~~~~~i~iid~~~----~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~----~~~---~~l~~~~~dgiil~GG~~~~ 75 (203)
..+..++|++|...+ .....+.++++++ |+. +.++.... .++ +.+. +.|+|+++||.-..
T Consensus 25 ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~l------G~~~v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG~~~~ 96 (217)
T cd03145 25 AGGAGARIVVIPAASEEPAEVGEEYRDVFERL------GAREVEVLVIDSREAANDPEVVARLR--DADGIFFTGGDQLR 96 (217)
T ss_pred cCCCCCcEEEEeCCCcChhHHHHHHHHHHHHc------CCceeEEeccCChHHcCCHHHHHHHH--hCCEEEEeCCcHHH
Confidence 334568999997764 3345577778888 875 44443321 122 2233 67999999984321
Q ss_pred C----CcchHHHHHHH-hCCCCcee--ehhHHHHHH
Q 037843 76 Q----ESGISFRTVLE-LGPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 76 ~----~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~ 104 (203)
. ....+.+.|++ +.++.|+. --|.-+++.
T Consensus 97 ~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~ 132 (217)
T cd03145 97 ITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSD 132 (217)
T ss_pred HHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhh
Confidence 1 11223455665 56778888 556655554
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. |
| >PRK14690 molybdopterin biosynthesis protein MoeA; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=4.8 Score=35.34 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=40.8
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~ 69 (203)
++||.||..+ +++...+...+++. |+.+..+. .|+.. .+.+.. .++|.||++
T Consensus 193 ~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItT 266 (419)
T PRK14690 193 PLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRW------GHAPVDLGRVGDDRAALAARLDRAAAEADVILTS 266 (419)
T ss_pred CCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHC------CCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEc
Confidence 5788888443 34667788889998 88775432 22211 122222 268999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.+ ..+.+.+.+.+.+
T Consensus 267 GG~S-~G~~D~v~~~l~~ 283 (419)
T PRK14690 267 GGAS-AGDEDHVSALLRE 283 (419)
T ss_pred CCcc-CCCcchHHHHHHh
Confidence 8854 4555544444443
|
|
| >COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.27 E-value=2.5 Score=36.92 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=43.5
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiil~ 69 (203)
++||+||..+ +++...+..+++++ |+++..+..-..+++++ .. ..+|.||.+
T Consensus 176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~------G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviIts 249 (404)
T COG0303 176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERA------GGEVVDLGIVPDDPEALREAIEKALSEADVIITS 249 (404)
T ss_pred CCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHc------CCceeeccccCCCHHHHHHHHHHhhhcCCEEEEe
Confidence 5889988433 45677888999999 88665432111122222 21 258999999
Q ss_pred CCCCCCCCcchHHHHHH
Q 037843 70 PGPGAPQESGISFRTVL 86 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~ 86 (203)
||. ++.+.+.+.+.++
T Consensus 250 GG~-SvG~~D~v~~~l~ 265 (404)
T COG0303 250 GGV-SVGDADYVKAALE 265 (404)
T ss_pred CCc-cCcchHhHHHHHH
Confidence 986 4566666666777
|
|
| >PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=85.22 E-value=5.8 Score=36.05 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----c--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----R--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~--~~~dgiil~ 69 (203)
++||+||..+ +++...+..++++. |+++..+..-..+.+++. . .++|.||++
T Consensus 179 rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~------G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVItt 252 (546)
T PRK14497 179 KPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSE------GYKIVGLSLLSDDKESIKNEIKRAISVADVLILT 252 (546)
T ss_pred CCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEc
Confidence 5788888433 24566788888888 887654321111233322 1 268999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.+ ....+...+.+.+
T Consensus 253 GGtS-~G~~D~~~~al~~ 269 (546)
T PRK14497 253 GGTS-AGEKDFVHQAIRE 269 (546)
T ss_pred CCcc-CCCCccHHHHHhh
Confidence 9864 4444444444443
|
|
| >PRK09393 ftrA transcriptional activator FtrA; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.7 Score=36.35 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCCEEEECCCCCCCC-CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ-ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++||.+... ....+.++|++. .++++|. |-|-.+|+.+
T Consensus 75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 689999988865322 233467778774 5667887 9999999885
|
|
| >PRK09468 ompR osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=13 Score=28.96 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=44.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
...+|+|++........+...++.. |..+........-.+.+....+|.||+--. .+...+ .+...++...
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~ 75 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQ------GFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQN 75 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 3578999998877778888888887 888765432111112223336898888322 122222 2344455433
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 76 ~~~pii 81 (239)
T PRK09468 76 NPTPII 81 (239)
T ss_pred CCCCEE
Confidence 568888
|
|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=5 Score=35.86 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=39.9
Q ss_pred CCCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 11 DKNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 11 ~~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
.+.+|+|+ ....+++..+++++.+-..+.+.|+.+.+.+..+.+.+++.. .++|+||| |.|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vil-Gsp 313 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLV-GSS 313 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEE-ECC
Confidence 35667666 555677888888776643332336788877766566767653 25799999 554
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=84.46 E-value=3.7 Score=30.47 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc----cCCCEEEECCCCCCC-CCcchH
Q 037843 11 DKNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR----KKPRGVVISPGPGAP-QESGIS 81 (203)
Q Consensus 11 ~~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~----~~~dgiil~GG~~~~-~~~~~~ 81 (203)
.++||++. |.++--...+.++|++. |+++...... .+++++.. .+.|.|++|+=.+.- .....+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~------GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~l 83 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA------GFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGL 83 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC------CceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHH
Confidence 46888887 55544456688899998 9998776543 45555432 378999997754432 123345
Q ss_pred HHHHHHhC-CCCceee
Q 037843 82 FRTVLELG-PTMPLFC 96 (203)
Q Consensus 82 ~~~i~~~~-~~~PilC 96 (203)
.+.+++.. ..+.++|
T Consensus 84 ve~lre~G~~~i~v~~ 99 (143)
T COG2185 84 VEALREAGVEDILVVV 99 (143)
T ss_pred HHHHHHhCCcceEEee
Confidence 56666642 3454334
|
|
| >PRK10680 molybdopterin biosynthesis protein MoeA; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=5.3 Score=34.97 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=38.8
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiil~ 69 (203)
++||.||-.+ +++...+..++++. |+.+..+..-..+.+++ .. .++|.||++
T Consensus 177 ~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~------G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvItt 250 (411)
T PRK10680 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQL------GCEVINLGIIRDDPHALRAAFIEADSQADVVISS 250 (411)
T ss_pred CCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEc
Confidence 5788888432 35566788889998 88765432111122222 22 268999999
Q ss_pred CCCCCCCCcchHHHHH
Q 037843 70 PGPGAPQESGISFRTV 85 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i 85 (203)
||.+ ..+.+...+.+
T Consensus 251 GG~S-~G~~D~~~~al 265 (411)
T PRK10680 251 GGVS-VGEADYTKTIL 265 (411)
T ss_pred CCCC-CCCcchHHHHH
Confidence 9864 33344333333
|
|
| >cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD) | Back alignment and domain information |
|---|
Probab=84.28 E-value=6.4 Score=28.50 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH----Hhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAE----LKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~----l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+.+++++. |.++.....-..+.++ +.. .++|.||.+||.| +...+...+.++++
T Consensus 18 d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g-~g~~D~t~~ai~~~ 83 (133)
T cd00758 18 DTNGPALEALLEDL------GCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG-VGRRDVTPEALAEL 83 (133)
T ss_pred EchHHHHHHHHHHC------CCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC-CCCCcchHHHHHHh
Confidence 45667788889888 8877544211112222 221 1589999999865 34444445555553
|
This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin. |
| >COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.18 E-value=5.9 Score=27.57 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~G 70 (203)
|.+|+++-+.+--++.+++-.++. +.+.|.++.+--+.+....+..+ ++|.++|.|
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~a--A~~kg~~~~I~A~s~~e~~~~~~-~~DvvLlGP 56 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKA--AESKGKDVTIEAYSETELSEYID-NADVVLLGP 56 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHH--HHhCCCceEEEEechhHHHHhhh-cCCEEEECh
Confidence 467888876655577788777665 23448888775443222333222 689999943
|
|
| >PRK01215 competence damage-inducible protein A; Provisional | Back alignment and domain information |
|---|
Probab=84.16 E-value=6 Score=32.47 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCcEEEEeCC---------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDNY---------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~~---------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~ 76 (203)
++++.||--+ +.+...+.+.+++. |+++.... .|+.. .+.+.. .+.|.||++||-| +.
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~------G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g-~t 75 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYL------GYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG-PT 75 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHC------CCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc-CC
Confidence 4677776333 34566788888888 88875432 23211 112211 2579999999865 33
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 76 ~dD~t~eaia~ 86 (264)
T PRK01215 76 YDDKTNEGFAK 86 (264)
T ss_pred hhhhHHHHHHH
Confidence 33333344444
|
|
| >PRK03767 NAD(P)H:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=5.5 Score=30.99 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=22.2
Q ss_pred CcEEEEeC-CchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 13 NPIVVIDN-YDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 13 ~~i~iid~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
++|+||-+ ..+.+..+++++.+...+ ..|+++++++.
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~-~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGARE-VAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhh-cCCcEEEEEec
Confidence 47888743 245677777766554221 13888887754
|
|
| >PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity | Back alignment and domain information |
|---|
Probab=83.62 E-value=5.4 Score=29.21 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEE---EeCCcccH-HHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEV---YRNDELTV-AELKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~~-~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+.+++++. |+++.. ++.+.... +.+.. .+.|.||.+||.|. ...+...+.+.++
T Consensus 16 d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~-~~~D~t~~a~~~~ 81 (144)
T PF00994_consen 16 DSNGPFLAALLEEL------GIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGP-GPDDVTPEALAEA 81 (144)
T ss_dssp BHHHHHHHHHHHHT------TEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSS-STTCHHHHHHHHH
T ss_pred EhHHHHHHHHHHHc------CCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCc-ccCCcccHHHHHh
Confidence 56777888999998 887753 33321111 12221 25799999999763 4444445555553
|
The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F .... |
| >TIGR00177 molyb_syn molybdenum cofactor synthesis domain | Back alignment and domain information |
|---|
Probab=83.52 E-value=5.9 Score=29.15 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--cCCCEEEECCCCCCCCCcchHHHHHHHhC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--KKPRGVVISPGPGAPQESGISFRTVLELG 89 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~~ 89 (203)
+++...+.+.+++. |+++..+..-..+.+++ .. .++|.||.+||.+ +...+...+.+.++.
T Consensus 26 d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g-~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 26 DSNGPLLAALLEEA------GFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG-VGPRDVTPEALEELG 92 (144)
T ss_pred eCcHHHHHHHHHHC------CCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCccHHHHHHHhC
Confidence 34566788889888 88876443111122222 21 2689999999865 344555556666543
|
The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis. |
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=83.29 E-value=5.6 Score=34.47 Aligned_cols=61 Identities=10% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 11 DKNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 11 ~~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
.+.+|+|+ ....+++..+++++.+-..+...|+++.+++..+.+.+++.. .++|+||| |+|
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~-Gsp 309 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILV-GSS 309 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-ECC
Confidence 35667666 555677888888776542211347888887765556666542 25899999 544
|
|
| >PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins | Back alignment and domain information |
|---|
Probab=83.27 E-value=2 Score=28.66 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=32.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~ 74 (203)
|+||+|=+. ..++.++|++. |+.+..+... .++. .+|++|++|-..+
T Consensus 1 MkkIAVE~~----Ls~v~~~L~~~------GyeVv~l~~~----~~~~--~~daiVvtG~~~n 47 (80)
T PF03698_consen 1 MKKIAVEEG----LSNVKEALREK------GYEVVDLENE----QDLQ--NVDAIVVTGQDTN 47 (80)
T ss_pred CCeEEecCC----chHHHHHHHHC------CCEEEecCCc----cccC--CcCEEEEECCCcc
Confidence 466776554 44788899998 9988665421 2233 6899999986543
|
|
| >COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.23 E-value=9.4 Score=31.20 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh------ccCCCEEEECCCCCCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK------RKKPRGVVISPGPGAPQE 77 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~------~~~~dgiil~GG~~~~~~ 77 (203)
+++..-|.+.|.+. |+++..+..-..++++|. ..++|-||+|||-|-..|
T Consensus 20 dtNa~~la~~L~~~------G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~D 75 (255)
T COG1058 20 DTNAAFLADELTEL------GVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHD 75 (255)
T ss_pred cchHHHHHHHHHhc------CceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCcc
Confidence 45567788999998 998765432111233332 126999999999885443
|
|
| >cd00885 cinA Competence-damaged protein | Back alignment and domain information |
|---|
Probab=82.41 E-value=9.5 Score=29.05 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
+++...+.+++++. |+.+..+. .|+.. .+.+.. ..+|.||.+||.| +...+...+.+.+
T Consensus 18 d~n~~~l~~~L~~~------G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G-~t~~D~t~ea~~~ 82 (170)
T cd00885 18 DTNAAFLAKELAEL------GIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG-PTHDDLTREAVAK 82 (170)
T ss_pred EhHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCChHHHHHHH
Confidence 45667788899998 88765332 23211 122221 2689999999865 3444444455554
|
CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin. |
| >PRK09267 flavodoxin FldA; Validated | Back alignment and domain information |
|---|
Probab=81.86 E-value=17 Score=27.17 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=31.4
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
++|+|+ ....+++..+++.+.+... +..+.+++..+.+..++. ++|.|||.
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~----~~~~~~~~~~~~~~~~l~--~~d~vi~g 53 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLG----KDVADVVDIAKASKEDFE--AYDLLILG 53 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhC----CCceEEEEhhhCCHhhHh--hCCEEEEE
Confidence 367666 5556778888887766421 224555554434445555 57999983
|
|
| >PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=81.66 E-value=2.4 Score=31.61 Aligned_cols=65 Identities=8% Similarity=0.092 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCC----CcchHHHHHHH-hCCCCcee
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQ----ESGISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~----~~~~~~~~i~~-~~~~~Pil 95 (203)
...+.++|+++ |+++..++....+.+++.. .+.|+|+|+||--... ....+.+.|++ +.++.|+.
T Consensus 2 ~~~~~~~f~~~------g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~ 73 (154)
T PF03575_consen 2 VEKFRKAFRKL------GFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVII 73 (154)
T ss_dssp HHHHHHHHHHC------T-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHC------CCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEE
Confidence 34567788888 9998887754333333322 1679999999832110 01123556666 45667777
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A. |
| >COG3340 PepE Peptidase E [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.18 E-value=6.7 Score=31.21 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=49.5
Q ss_pred CCcEEEEeCCc------hHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCC-----c
Q 037843 12 KNPIVVIDNYD------SFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQE-----S 78 (203)
Q Consensus 12 ~~~i~iid~~~------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~-----~ 78 (203)
.++|+.|-..+ -|..-..++|+++ |+.+.-++....+.+++++ .+.|.|.++||- ...- +
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~l------g~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN-TF~LL~~lke 104 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKL------GLEVSELHLSKPPLAAIENKLMKADIIYVGGGN-TFNLLQELKE 104 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHc------CCeeeeeeccCCCHHHHHHhhhhccEEEECCch-HHHHHHHHHH
Confidence 46899993322 2345566788888 9999887765566777774 257999997773 1110 1
Q ss_pred chHHHHHHH-hCCCCcee
Q 037843 79 GISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 79 ~~~~~~i~~-~~~~~Pil 95 (203)
-.+.+.|++ ..+++|.+
T Consensus 105 ~gld~iIr~~vk~G~~Yi 122 (224)
T COG3340 105 TGLDDIIRERVKAGTPYI 122 (224)
T ss_pred hCcHHHHHHHHHcCCceE
Confidence 113455665 67888888
|
|
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=81.15 E-value=7.9 Score=27.21 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHHHHHHHhCC-CCceeehh
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISFRTVLELGP-TMPLFCMG 98 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~~~i~~~~~-~~PilClG 98 (203)
...+..+|+.. |+++..+..+ .+.+++. ..++|.|.||....... ....+.+.+++... +++|++-|
T Consensus 16 ~~~~~~~l~~~------G~~V~~lg~~-~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 16 KNIVARALRDA------GFEVIDLGVD-VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 34566788887 9998665443 4554543 35899999977633221 12234455555444 66776433
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=81.06 E-value=15 Score=25.01 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=48.9
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE--e-CCcccHHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY--R-NDELTVAELKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~--~-~~~~~~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+|+||-........+.+.+++. |...... . ........+.. .+.|.||+.=+.-+ -.....+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~------G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs----H~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKY------GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS----HNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHc------CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC----hHHHHHHHHH
Confidence 4788876566778888899898 9988777 1 11111112332 15699998443221 1222333332
Q ss_pred --CCCCcee-e--hhHHHHHHHh
Q 037843 89 --GPTMPLF-C--MGLKCIGEAL 106 (203)
Q Consensus 89 --~~~~Pil-C--lG~Qlla~a~ 106 (203)
..++|++ | .|..-|..++
T Consensus 71 akk~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 71 AKKYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred HHHcCCcEEEECCCCHHHHHHHH
Confidence 4679999 5 5777666554
|
|
| >PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=16 Score=30.56 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=42.6
Q ss_pred cCCCCCcEEEEeCCch-H----HHHHHHHHHHhhhhhcCCceEEEEeCCcc---------------cHHHHhccCCCEEE
Q 037843 8 SKNDKNPIVVIDNYDS-F----TYNLCQYMGELELELSQGYHFEVYRNDEL---------------TVAELKRKKPRGVV 67 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~-~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~---------------~~~~l~~~~~dgii 67 (203)
|++.+++|+|+-+... . ...+.++|++. |+.+.+...... +..++.. .+|.+|
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi 73 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQH------GFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQ-YCDLVA 73 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHC------CCEEEEecccccccchhccccccccccchhhcCc-CCCEEE
Confidence 5566778988855432 1 23455566666 888766421100 1122221 479999
Q ss_pred ECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 68 ISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 68 l~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
..||.|. +....+.+ ..++|||
T Consensus 74 ~lGGDGT------~L~aa~~~~~~~~Pil 96 (296)
T PRK04539 74 VLGGDGT------FLSVAREIAPRAVPII 96 (296)
T ss_pred EECCcHH------HHHHHHHhcccCCCEE
Confidence 9999653 34444543 4578888
|
|
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=80.56 E-value=16 Score=30.02 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=34.9
Q ss_pred CCCcEEEEeCCch--------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 11 DKNPIVVIDNYDS--------FTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 11 ~~~~i~iid~~~~--------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
|+++|+|+-.+.+ -...+.++|++. |.++.++.++......+...++|.|+..
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~------g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREA------GYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHC------CCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 4568998853332 135677888888 9999888765333333434478998875
|
|
| >PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional | Back alignment and domain information |
|---|
Probab=80.50 E-value=12 Score=29.30 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHhhhhhcCCce---E--EEEeCCccc-HHHHhc----cCCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYH---F--EVYRNDELT-VAELKR----KKPRGVVISPGPGAPQESGISFRTVLE-LGP 90 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~---~--~v~~~~~~~-~~~l~~----~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~ 90 (203)
+.+...+..++++. |.. + .+++.+... .+.+.. .++|.||.+||.| +...+...+.++. +++
T Consensus 22 D~ng~~L~~~L~~~------G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg-~g~rDvTpeAv~~l~~k 94 (193)
T PRK09417 22 DKGIPALEEWLASA------LTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG-PARRDVTPEATLAVADK 94 (193)
T ss_pred echHHHHHHHHHHc------CCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC-CCCCCcHHHHHHHHhCC
Confidence 34566788888887 532 2 233322111 112221 2589999999865 4445555566666 355
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
.+|=+
T Consensus 95 eipG~ 99 (193)
T PRK09417 95 EMPGF 99 (193)
T ss_pred cCCcH
Confidence 56654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 203 | ||||
| 1qdl_B | 195 | The Crystal Structure Of Anthranilate Synthase From | 3e-23 | ||
| 1i7q_B | 193 | Anthranilate Synthase From S. Marcescens Length = 1 | 5e-18 | ||
| 1i1q_B | 192 | Structure Of The Cooperative Allosteric Anthranilat | 5e-18 | ||
| 1gpm_A | 525 | Escherichia Coli Gmp Synthetase Complexed With Amp | 9e-04 |
| >pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195 | Back alignment and structure |
|
| >pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193 | Back alignment and structure |
|
| >pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192 | Back alignment and structure |
|
| >pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 203 | |||
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 2e-77 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 2e-72 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 8e-28 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 2e-19 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 3e-10 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 3e-09 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 5e-09 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 7e-09 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 3e-08 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 4e-08 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 7e-06 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 1e-05 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 1e-05 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 2e-05 |
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 2e-77
Identities = 67/197 (34%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
++IDNYDSF YN+ Q +GEL G + V RNDE+++ ++R P ++ISPGPG
Sbjct: 4 TLIIDNYDSFVYNIAQIVGEL------GSYPIVIRNDEISIKGIERIDPDRLIISPGPGT 57
Query: 75 P---QESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSC---M-GKALVY 125
P ++ G+S + LG P+ C+G + IG A + + GK
Sbjct: 58 PEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAK-----IRRARKVFHGKISNI 112
Query: 126 YNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHL 185
L G++ F A RYH LV+++ ++ + ED IMA H++Y +
Sbjct: 113 ILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHR-PLIVDAISA-EDNEIMAIHHEEYP-I 169
Query: 186 HGVQFHPESILTSEGKT 202
+GVQFHPES+ TS G
Sbjct: 170 YGVQFHPESVGTSLGYK 186
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 2e-72
Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 30/198 (15%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKRKKPRGVVISPG 71
I+++DN DSFT+NL + G++ +YRN + + L K +++SPG
Sbjct: 3 ILLLDNIDSFTWNLADQLRTN------GHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPG 56
Query: 72 PGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSC---M-GKA-LV 124
PG P E+G + L +P+ C+G + I EA G + + GKA +
Sbjct: 57 PGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGY-----VGQAGEILHGKATSI 111
Query: 125 YYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKH 184
++ + + AGL+NP RYH LV L + A +G++MA RH +
Sbjct: 112 EHDGQ----AMFAGLANPLPVARYHSLVGSN---VPAGLTINAHF-NGMVMAVRHDADR- 162
Query: 185 LHGVQFHPESILTSEGKT 202
+ G QFHPESILT++G
Sbjct: 163 VCGFQFHPESILTTQGAR 180
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-28
Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 38/199 (19%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
+++D D FT + Q + L L V + + + VV+ PGPG
Sbjct: 449 ALIVDAEDHFTAMIAQQLSSLGLATE------VCGVHDA----VDLARYDVVVMGPGPGD 498
Query: 75 PQESGISFRTVLE------LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYY 126
P ++G L + P C+ + + L L +
Sbjct: 499 PSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRR--------EVPNQ 550
Query: 127 NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDE-----LEVTAWTEDGLIMAARHKK 181
+ E D G Y+ V + D + ++ G + A R
Sbjct: 551 GIQVEIDLF----GQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGP- 605
Query: 182 YKHLHGVQFHPESILTSEG 200
+QFH ES+LT +G
Sbjct: 606 --TFSSMQFHAESVLTVDG 622
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 | Back alignment and structure |
|---|
Score = 83.6 bits (206), Expect = 2e-19
Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 31/191 (16%)
Query: 42 GYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTV----------LELGPT 91
G R D K ++ PG + + G
Sbjct: 65 GARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDY 124
Query: 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEAD---------GLLAGLS 140
P++ C+G + + + G L + A+ + LL L+
Sbjct: 125 FPVWGTCLGFEELSLLISGECL-LTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLA 183
Query: 141 NPFTAGRYHGLVIEKDSFR-----SDELEVTAWTEDGL---IMAARHKKYKHLHGVQFHP 192
+H + +F V DG I KY ++GVQ+HP
Sbjct: 184 VEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHP 242
Query: 193 ESILTSEGKTK 203
E
Sbjct: 243 EKAPYEWKNLD 253
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 38/172 (22%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
E++ + +K + R ++IS GP AP + +G P+ C
Sbjct: 57 EIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFD----PAIFTIG--KPVLGICY 109
Query: 98 GLKCIGEALEGRLYVLLLVSCM-----GKALVYYNEKEEADGLLAGLSNPFTAGRYHGLV 152
G++ + + G V G + + L GL HG
Sbjct: 110 GMQMMNKVFGGT------VHKKSVREDGVFNI---SVDNTCSLFRGLQKEEVVLLTHGDS 160
Query: 153 IEK--DSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202
++K D F +V A + + I+A + K L+G QFHPE LT GK
Sbjct: 161 VDKVADGF-----KVVARSGN--IVAGIANESKKLYGAQFHPEVGLTENGKV 205
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 3e-09
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 42/174 (24%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
+ D + E+ + +P+ +++S GP AP+ + G +PL C
Sbjct: 27 LILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPD----PRLFSSG--LPLLGICY 79
Query: 98 GLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150
G++ + + L G Y GKAL+ +E L GL H
Sbjct: 80 GMQLLAQELGGRVERAGRAEY--------GKALLTRHE----GPLFRGLEGEVQVWMSHQ 127
Query: 151 LVIEK--DSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202
+ + V A TE+ + A +GVQFHPE T +G
Sbjct: 128 DAVTAPPPGW-----RVVAETEENPVAAIASPD-GRAYGVQFHPEVAHTPKGMQ 175
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 5e-09
Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 49/182 (26%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
E+ D + ++ P G+++S GP + + E+G P+ C
Sbjct: 38 ELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAP----AFIFEIG--CPVLGICY 90
Query: 98 GLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY-- 148
G++ + L G + G A + L G+ + +
Sbjct: 91 GMQTMAYQLGGKVNRTAKAEF--------GHAQL---RVLNPAFLFDGIEDQVSPQGEPL 139
Query: 149 ------HGLVIEK--DSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200
HG ++ + F E TA T++ + A K + G+QFHPE T +G
Sbjct: 140 LDVWMSHGDIVSELPPGF-----EATACTDNSPLAAMADFK-RRFFGLQFHPEVTHTPQG 193
Query: 201 KT 202
Sbjct: 194 HR 195
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 7e-09
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 49/182 (26%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
E++ D +T A+++ P G+++S GP +P+ + V E G +P+F C
Sbjct: 35 ELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAP----QYVFEAG--VPVFGVCY 87
Query: 98 GLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY-- 148
G++ + L G R + G A V E L+ G+ + TA
Sbjct: 88 GMQTMAMQLGGHVEASNEREF--------GYAQV---EVVNDSALVRGIEDALTADGKPL 136
Query: 149 ------HGLVIEK--DSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200
HG + F A TE +++ K +GVQFHPE T +G
Sbjct: 137 LDVWMSHGDKVTAIPSDF-----ITVASTESCPFAIMANEE-KRFYGVQFHPEVTHTRQG 190
Query: 201 KT 202
Sbjct: 191 MR 192
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-08
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 42/174 (24%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
E++ + +K + R ++IS GP AP + +G P+ C
Sbjct: 52 EIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFD----PAIFTIG--KPVLGICY 104
Query: 98 GLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150
G++ + + G R G + + L GL HG
Sbjct: 105 GMQMMNKVFGGTVHKKSVRED--------GVFNI---SVDNTCSLFRGLQKEEVVLLTHG 153
Query: 151 LVIEK--DSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202
++K D F +V A + + I+A + K L+G QFHPE LT GK
Sbjct: 154 DSVDKVADGF-----KVVARSGN--IVAGIANESKKLYGAQFHPEVGLTENGKV 200
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-08
Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 37/172 (21%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
++ N + E+K P+G++ S GP + E +P+ C+
Sbjct: 28 KIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGNCEKVL----EHYDEFN--VPILGICL 80
Query: 98 GLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150
G + I + G Y + E + + GL H
Sbjct: 81 GHQLIAKFFGGKVGRGEKAEY--------SLVEI---EIIDEXEIFKGLPKRLKVWESHM 129
Query: 151 LVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202
+++ + ++ A +E I A +H++ ++GVQFHPE T +G+
Sbjct: 130 DEVKE---LPPKFKILARSETCPIEAMKHEE-LPIYGVQFHPEVAHTEKGEE 177
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-06
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 45/176 (25%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP--------GAPQESGISFRTVLELGPTMPLF-- 95
++ ND + +EL G+V+S G + + + P+
Sbjct: 41 KIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVG----KYIDDHN--YPILGI 91
Query: 96 CMGLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY 148
C+G + I + GK V ++ + GL + T
Sbjct: 92 CVGAQFIALHFGASVVKAKHPEF--------GKTKV---SVMHSENIFGGLPSEITVWEN 140
Query: 149 HGLVIEK--DSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202
H I D F + A + + HK + ++ QFHPE T G+
Sbjct: 141 HNDEIINLPDDF-----TLAASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRD 190
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 161 DELEVTAWTEDGLIMAARHKKYKH-LHGVQFHPE 193
+VTA T DG+I A GVQ+HPE
Sbjct: 187 PSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPE 220
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 53/198 (26%)
Query: 46 EVYRNDELTVAELKRKKPRGVVISPGP------GAPQESGISFRTVLELGPTMPLF--CM 97
E + + ++K +GV++S GP G+P F LE +P+F C
Sbjct: 35 ETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKK--IPIFGICY 91
Query: 98 GLKCIGEALEG-------RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150
G++ I + G Y G V + + + + ++
Sbjct: 92 GMQEIAVQMNGEVKKSKTSEY--------GCTDVNILRNDNINNITYCRNFGDSSSAMDL 143
Query: 151 LVIEKDSFRSDEL--------------------------EVTAWTEDGLIMAARHKKYKH 184
K + L + + +E+ LI + +K+ +
Sbjct: 144 YSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKE-YN 202
Query: 185 LHGVQFHPESILTSEGKT 202
++GVQ+HPE + +G+
Sbjct: 203 IYGVQYHPEVYESLDGEL 220
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 27/167 (16%)
Query: 40 SQGYHFEVYRNDELTVAELKRKKPRGVVISPGP-GAPQESGISF--------RTVLELGP 90
+ + F+ + E ++ VV+ G GA +E F +L+
Sbjct: 35 EKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEI 94
Query: 91 TMPLFCMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150
C+G + + + L +Y +G V EK + + ++HG
Sbjct: 95 PFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFV---EKVSDNKFFREFPDRLRVFQWHG 151
Query: 151 LVIEKDSFRSDEL----EVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193
D+F +L +E Y G+QFH E
Sbjct: 152 -----DTF---DLPRRATRVFTSEKYENQGFV---YGKAVGLQFHIE 187
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 203 | |||
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 100.0 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 100.0 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 100.0 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 100.0 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 100.0 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 100.0 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 100.0 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 100.0 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 100.0 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 100.0 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 99.98 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 99.97 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 99.97 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 99.97 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 99.97 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 99.97 | |
| 4gud_A | 211 | Imidazole glycerol phosphate synthase subunit His; | 99.96 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 99.95 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 99.95 | |
| 3d54_D | 213 | Phosphoribosylformylglycinamidine synthase 1; alph | 99.95 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 99.94 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 99.93 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 99.93 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 99.93 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 99.92 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 99.92 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 99.91 | |
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 99.91 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 99.91 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 99.89 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 99.89 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 99.88 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.87 | |
| 2h2w_A | 312 | Homoserine O-succinyltransferase; TM0881, (EC 2.3. | 99.87 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 99.82 | |
| 3ugj_A | 1303 | Phosphoribosylformylglycinamidine synthase; amidot | 99.06 | |
| 1fy2_A | 229 | Aspartyl dipeptidase; serine protease, catalytic t | 98.45 | |
| 3l4e_A | 206 | Uncharacterized peptidase LMO0363; hypothetical pr | 98.36 | |
| 4hcj_A | 177 | THIJ/PFPI domain protein; structural genomics, PSI | 97.94 | |
| 1oi4_A | 193 | Hypothetical protein YHBO; PFPI/THIJ family, compl | 97.89 | |
| 1vhq_A | 232 | Enhancing lycopene biosynthesis protein 2; structu | 97.59 | |
| 2rk3_A | 197 | Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha | 97.46 | |
| 3l18_A | 168 | Intracellular protease I; gatase1_PFPI_LIKE, hydro | 97.46 | |
| 2ab0_A | 205 | YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase | 97.45 | |
| 3l3b_A | 242 | ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, | 97.44 | |
| 1u9c_A | 224 | APC35852; structural genomics, protein structure i | 97.35 | |
| 3ot1_A | 208 | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate | 97.25 | |
| 4e08_A | 190 | DJ-1 beta; flavodoxin-like fold, stress response, | 97.23 | |
| 2vrn_A | 190 | Protease I, DR1199; cysteine sulfenic acid, DJ-1/T | 97.13 | |
| 3gra_A | 202 | Transcriptional regulator, ARAC family; transcript | 97.05 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 96.99 | |
| 3cne_A | 175 | Putative protease I; structural genomics, PSI-2, M | 96.97 | |
| 2fex_A | 188 | Conserved hypothetical protein; structural genomic | 96.83 | |
| 3efe_A | 212 | THIJ/PFPI family protein; structural GEN csgid, ce | 96.82 | |
| 3f5d_A | 206 | Protein YDEA; unknow protein, PSI-II, nysgrc, stru | 96.71 | |
| 3n7t_A | 247 | Macrophage binding protein; seattle structural gen | 96.66 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 96.63 | |
| 3er6_A | 209 | Putative transcriptional regulator protein; struct | 96.53 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 96.36 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 96.3 | |
| 3noq_A | 231 | THIJ/PFPI family protein; DJ-1 superfamily, isocya | 96.15 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 96.13 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 96.11 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 95.87 | |
| 1rw7_A | 243 | YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe | 95.83 | |
| 4gdh_A | 194 | DJ-1, uncharacterized protein C22E12.03C; unknown | 95.36 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 95.2 | |
| 3bhn_A | 236 | THIJ/PFPI domain protein; structural genomics, joi | 94.92 | |
| 3ewn_A | 253 | THIJ/PFPI family protein; monomer, PSI nysgrc, str | 94.63 | |
| 1n57_A | 291 | Chaperone HSP31, protein YEDU; alpha-beta sandwich | 94.58 | |
| 2rdm_A | 132 | Response regulator receiver protein; structural ge | 94.52 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 94.4 | |
| 3grc_A | 140 | Sensor protein, kinase; protein structure initiati | 94.3 | |
| 3gt7_A | 154 | Sensor protein; structural genomics, signal receiv | 94.22 | |
| 3hdg_A | 137 | Uncharacterized protein; two-component sensor acti | 94.17 | |
| 3cg4_A | 142 | Response regulator receiver domain protein (CHEY-; | 93.95 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 93.77 | |
| 3h5i_A | 140 | Response regulator/sensory box protein/ggdef domai | 93.74 | |
| 3i42_A | 127 | Response regulator receiver domain protein (CHEY- | 93.53 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 93.51 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 93.46 | |
| 2pbq_A | 178 | Molybdenum cofactor biosynthesis MOG; molybdopteri | 93.44 | |
| 3a10_A | 116 | Response regulator; phosphoacceptor, signaling pro | 93.37 | |
| 2zay_A | 147 | Response regulator receiver protein; structural ge | 93.28 | |
| 2gkg_A | 127 | Response regulator homolog; social motility, recei | 93.18 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 93.18 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 92.97 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 92.96 | |
| 2gwr_A | 238 | DNA-binding response regulator MTRA; two-component | 92.85 | |
| 3hdv_A | 136 | Response regulator; PSI-II, structural genomics, P | 92.8 | |
| 3kbq_A | 172 | Protein TA0487; structural genomics, CINA, protein | 92.65 | |
| 3en0_A | 291 | Cyanophycinase; serine protease, beta peptide spec | 92.65 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 92.61 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 92.56 | |
| 2j48_A | 119 | Two-component sensor kinase; pseudo-receiver, circ | 92.5 | |
| 3snk_A | 135 | Response regulator CHEY-like protein; P-loop conta | 92.44 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 92.32 | |
| 2pln_A | 137 | HP1043, response regulator; signaling protein; 1.8 | 92.27 | |
| 3lte_A | 132 | Response regulator; structural genomics, PSI, prot | 92.2 | |
| 3rht_A | 259 | (gatase1)-like protein; structural genomics, PSI-b | 92.07 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 91.98 | |
| 1k66_A | 149 | Phytochrome response regulator RCPB; CHEY homologu | 91.97 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 91.92 | |
| 1mvo_A | 136 | PHOP response regulator; phosphate regulon, transc | 91.85 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 91.75 | |
| 1kgs_A | 225 | DRRD, DNA binding response regulator D; DNA-bindin | 91.61 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 91.44 | |
| 1srr_A | 124 | SPO0F, sporulation response regulatory protein; as | 91.38 | |
| 3rfq_A | 185 | Pterin-4-alpha-carbinolamine dehydratase MOAB2; st | 91.16 | |
| 3crn_A | 132 | Response regulator receiver domain protein, CHEY-; | 91.11 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 90.79 | |
| 3f6p_A | 120 | Transcriptional regulatory protein YYCF; unphospho | 90.71 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 90.68 | |
| 2g2c_A | 167 | Putative molybdenum cofactor biosynthesis protein; | 90.66 | |
| 3pzy_A | 164 | MOG; ssgcid, seattle structural genomics center fo | 90.38 | |
| 2ark_A | 188 | Flavodoxin; FMN, structural genomics, PSI, structu | 90.33 | |
| 3cfy_A | 137 | Putative LUXO repressor protein; structural genomi | 90.0 | |
| 3nhm_A | 133 | Response regulator; protein structure initiative I | 89.98 | |
| 1tmy_A | 120 | CHEY protein, TMY; chemotaxis, phosphoryl transfer | 89.96 | |
| 2is8_A | 164 | Molybdopterin biosynthesis enzyme, MOAB; globular | 89.85 | |
| 2lpm_A | 123 | Two-component response regulator; transcription re | 89.81 | |
| 2b4a_A | 138 | BH3024; flavodoxin-like fold, structural genomics, | 89.62 | |
| 2qvg_A | 143 | Two component response regulator; NYSGXRC, PSI-2, | 89.56 | |
| 2fz5_A | 137 | Flavodoxin; alpha/beta doubly-wound topology, non- | 89.54 | |
| 2pl1_A | 121 | Transcriptional regulatory protein PHOP; CHEY-like | 89.33 | |
| 1k68_A | 140 | Phytochrome response regulator RCPA; phosphorylate | 89.31 | |
| 1y5e_A | 169 | Molybdenum cofactor biosynthesis protein B; struct | 89.3 | |
| 3eq2_A | 394 | Probable two-component response regulator; adaptor | 89.29 | |
| 3rqi_A | 184 | Response regulator protein; structural genomics, s | 88.88 | |
| 1dbw_A | 126 | Transcriptional regulatory protein FIXJ; doubly wo | 88.65 | |
| 4dad_A | 146 | Putative pilus assembly-related protein; response | 88.59 | |
| 3mgk_A | 211 | Intracellular protease/amidase related enzyme (THI | 88.56 | |
| 3fni_A | 159 | Putative diflavin flavoprotein A 3; alpha-beta pro | 88.26 | |
| 3r0j_A | 250 | Possible two component system response transcript | 88.18 | |
| 3lua_A | 140 | Response regulator receiver protein; two-component | 88.0 | |
| 3ilh_A | 146 | Two component response regulator; NYSGXRC, PSI-II, | 87.97 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 87.68 | |
| 2jba_A | 127 | Phosphate regulon transcriptional regulatory PROT; | 87.43 | |
| 2pjk_A | 178 | 178AA long hypothetical molybdenum cofactor biosyn | 87.34 | |
| 1zgz_A | 122 | Torcad operon transcriptional regulatory protein; | 87.17 | |
| 1mkz_A | 172 | Molybdenum cofactor biosynthesis protein B; MAD, W | 87.16 | |
| 1ys7_A | 233 | Transcriptional regulatory protein PRRA; response | 87.08 | |
| 2a9o_A | 120 | Response regulator; essential protein, YYCF/YYCG h | 86.95 | |
| 1xhf_A | 123 | DYE resistance, aerobic respiration control protei | 86.84 | |
| 5nul_A | 138 | Flavodoxin; electron transport, flavoprotein, FMN; | 86.84 | |
| 1jlj_A | 189 | Gephyrin; globular alpha/beta fold, structural pro | 86.71 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 86.65 | |
| 3iwt_A | 178 | 178AA long hypothetical molybdenum cofactor biosy | 86.43 | |
| 3kto_A | 136 | Response regulator receiver protein; PSI-II,struct | 86.25 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 86.12 | |
| 2a5l_A | 200 | Trp repressor binding protein WRBA; APC5760, PA094 | 86.01 | |
| 1yio_A | 208 | Response regulatory protein; transcription regulat | 86.0 | |
| 3heb_A | 152 | Response regulator receiver domain protein (CHEY); | 85.92 | |
| 3c3m_A | 138 | Response regulator receiver protein; structural ge | 85.46 | |
| 3t8y_A | 164 | CHEB, chemotaxis response regulator protein-glutam | 85.42 | |
| 2ayx_A | 254 | Sensor kinase protein RCSC; two independent struct | 85.36 | |
| 2qv0_A | 143 | Protein MRKE; structural genomics, transcription, | 85.28 | |
| 2an1_A | 292 | Putative kinase; structural genomics, PSI, protein | 85.21 | |
| 1zh2_A | 121 | KDP operon transcriptional regulatory protein KDPE | 84.93 | |
| 3t6k_A | 136 | Response regulator receiver; flavodoxin-like, stru | 84.55 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 84.38 | |
| 3b2n_A | 133 | Uncharacterized protein Q99UF4; structural genomic | 84.37 | |
| 3mm4_A | 206 | Histidine kinase homolog; receiver domain, CKI1, c | 83.79 | |
| 2qsj_A | 154 | DNA-binding response regulator, LUXR family; struc | 83.61 | |
| 3hly_A | 161 | Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein | 83.44 | |
| 3m6m_D | 143 | Sensory/regulatory protein RPFC; RPFF, REC, enoyl- | 83.41 | |
| 2oqr_A | 230 | Sensory transduction protein REGX3; response regul | 83.38 | |
| 2zki_A | 199 | 199AA long hypothetical Trp repressor binding prot | 83.16 | |
| 3kcn_A | 151 | Adenylate cyclase homolog; SGX, PSI 2, structural | 83.1 | |
| 1mb3_A | 124 | Cell division response regulator DIVK; signal tran | 83.1 | |
| 3eqz_A | 135 | Response regulator; structural genomics, unknown f | 82.69 | |
| 3c97_A | 140 | Signal transduction histidine kinase; structural g | 82.66 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 82.19 | |
| 1di6_A | 195 | MOGA, molybdenum cofactor biosynthetic enzyme; MOC | 82.19 | |
| 2hqr_A | 223 | Putative transcriptional regulator; phosporylation | 81.43 | |
| 3cu5_A | 141 | Two component transcriptional regulator, ARAC FAM; | 81.12 | |
| 2qzj_A | 136 | Two-component response regulator; 11017X, PSI-II, | 81.05 | |
| 3rpe_A | 218 | MDAB, modulator of drug activity B; structural gen | 80.79 | |
| 1p6q_A | 129 | CHEY2; chemotaxis, signal transduction, response r | 80.27 |
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=243.67 Aligned_cols=176 Identities=39% Similarity=0.673 Sum_probs=146.8
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc---chHHHHHHHhC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES---GISFRTVLELG 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~~~ 89 (203)
+||+|||++++|+.++.+++++. |+.+.+++++..+.+++...++|||||+||++++.+. +...++++++.
T Consensus 2 ~mi~iid~~~s~~~~~~~~l~~~------G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~ 75 (195)
T 1qdl_B 2 DLTLIIDNYDSFVYNIAQIVGEL------GSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLG 75 (195)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHT------TCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHT
T ss_pred CEEEEEECCCchHHHHHHHHHhC------CCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhc
Confidence 45999999999999999999999 9999999876445667765468999999999998763 33456777777
Q ss_pred CCCcee--ehhHHHHHHHhCCeecccccccccc-ceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMG-KALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g-~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
.++|+| |+|||+|+.++||++.+.. ...+| +..+.++.. ..+++|+++++.+.++++|++.|.. +|++++++
T Consensus 76 ~~~PvLGIC~G~QlL~~~~gg~v~~~~-~~~~g~~~~v~~~~~-~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vl 150 (195)
T 1qdl_B 76 KRTPILGVCLGHQAIGYAFGAKIRRAR-KVFHGKISNIILVNN-SPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVD 150 (195)
T ss_dssp TTSCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEEECCS-SCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEE
T ss_pred CCCcEEEEehHHHHHHHHhCCEEeccC-CCcCCCceEEEECCC-CHhHHHhcCCCceEEeccccchhhh---CCCCcEEE
Confidence 789999 9999999999999999876 34455 466766532 1128999998889999999999976 67999999
Q ss_pred EEc-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 167 AWT-EDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 167 a~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|++ +++.++|+++++++ ++|+|||||++.+++|
T Consensus 151 a~s~~~g~i~a~~~~~~~-~~gvQfHPE~~~~~~g 184 (195)
T 1qdl_B 151 AISAEDNEIMAIHHEEYP-IYGVQFHPESVGTSLG 184 (195)
T ss_dssp EEESSSCCEEEEEESSSS-EEEESSBTTSTTCTTH
T ss_pred EEECCCCcEEEEEeCCCC-EEEEecCCCCCCCccH
Confidence 999 89999999998876 9999999999987765
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=233.52 Aligned_cols=172 Identities=36% Similarity=0.603 Sum_probs=135.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc----cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR----KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~----~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
++|+||||++||++++.++++++ |+++.+++++ .+.+++.. .+.+++||+||++++.+.+...++++.+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~------G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~ 73 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTN------GHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRL 73 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHT------TCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHC------CCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHH
Confidence 57999999999999999999999 9999999876 33344422 1356799999999998877666667667
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
..++||| |+|||+|+.++||++.+.. ...+|....... ..+++|+++++.+.++++|++.+.. +|++++++
T Consensus 74 ~~~~PilGIC~G~Qll~~~~Gg~v~~~~-~~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~v~ 146 (192)
T 1i1q_B 74 RGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEH---DGQAMFAGLANPLPVARYHSLVGSN---VPAGLTIN 146 (192)
T ss_dssp BTTBCEEEETHHHHHHHHHTSCCCCC----CCSSEEEEEEE---CCCGGGTTSCSSEEEEECCC---CC---CCTTCEEE
T ss_pred hcCCCEEEECcChHHHHHHhCCEEEeCC-CcEecceeEEec---CCChHHhcCCCCcEEEechhhHhhh---CCCccEEE
Confidence 7789999 9999999999999998775 456776333222 2267999999899999999999976 67899999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|.+ ++.++++++.+++ +||+|||||++.+++|
T Consensus 147 a~~-~~~~~ai~~~~~~-~~gvQfHPE~~~~~~g 178 (192)
T 1i1q_B 147 AHF-NGMVMAVRHDADR-VCGFQFHPESILTTQG 178 (192)
T ss_dssp EEE-TTEEEEEEETTTT-EEEESSBTTSTTCTTH
T ss_pred ECC-CCcEEEEEECCCC-EEEEEccCcccCCccc
Confidence 965 4679999988776 9999999999988766
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=230.23 Aligned_cols=171 Identities=22% Similarity=0.365 Sum_probs=143.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~ 92 (203)
||+|||++++|+.++.+++++. |+.+.+++.+ .+.+++...++|||||+||+ ++.+.+...++++++ +.++
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~------G~~~~~~~~~-~~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~ 73 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYL------GVETKIIPNT-TPLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNV 73 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHT------TCEEEEEETT-CCHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCS
T ss_pred eEEEEECCCchHHHHHHHHHHC------CCeEEEEECC-CChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCC
Confidence 5999999999999999999999 9999999875 35666654468999999999 776655556777775 6889
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|+| |+|||+|+.++||++.+.. ..++|+..+.... .+++|+++++.+.++++|++.+.. +|++++++|+++
T Consensus 74 PilGIC~G~Q~l~~~~gg~v~~~~-~~~~G~~~~~~~~---~~~l~~~~~~~~~~~~~h~~~v~~---l~~~~~vla~s~ 146 (189)
T 1wl8_A 74 PILGICLGHQLIAKFFGGKVGRGE-KAEYSLVEIEIID---EXEIFKGLPKRLKVWESHMDEVKE---LPPKFKILARSE 146 (189)
T ss_dssp CEEEETHHHHHHHHHHTCEEEECS-CCSCEEEEEEESC---C--CCTTSCSEEEEEECCSEEEEE---CCTTEEEEEEES
T ss_pred eEEEEcHHHHHHHHHhCCceecCC-CcccCceeEEEec---CchHHhCCCCceEEEEEeeeehhh---CCCCcEEEEEcC
Confidence 999 9999999999999999876 4578886666543 367999888888999999999876 678999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++.+++++++++| ++|+|||||++.+++|
T Consensus 147 ~g~i~a~~~~~~~-~~gvQfHPE~~~~~~g 175 (189)
T 1wl8_A 147 TCPIEAMKHEELP-IYGVQFHPEVAHTEKG 175 (189)
T ss_dssp SCSCSEEEESSSC-EEEESSCTTSTTSTTH
T ss_pred CCCEEEEEeCCce-EEEEecCCCcCCCcch
Confidence 9999999999876 9999999999887654
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=266.40 Aligned_cols=179 Identities=22% Similarity=0.354 Sum_probs=139.5
Q ss_pred ccCCC--CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHH
Q 037843 7 LSKND--KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 7 ~~~~~--~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
+|.+. ..+|+|||++++|+++++++++++ |+.+++++++ .+.+++...++|||||||||+++++.+.. ..
T Consensus 3 ~m~~~~~~~~I~IlD~g~~~~~~i~r~lr~~------Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~ 74 (527)
T 3tqi_A 3 AMLKDIHQHRILILDFGSQYAQLIARRVREI------GVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RA 74 (527)
T ss_dssp -----CCCSEEEEEECSCTTHHHHHHHHHHH------TCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------C
T ss_pred cccccccCCeEEEEECCCccHHHHHHHHHHC------CCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hh
Confidence 45433 258999999999999999999999 9999999875 55666766678999999999998765432 11
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCC--------ceEEeeccccee
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSN--------PFTAGRYHGLVI 153 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~--------~~~~~~~H~~~v 153 (203)
.+. ++.++||| |+|||+|+.++||+|.+.. ..++|+..+.+... ++||++++. .+.++++|+|.|
T Consensus 75 ~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~-~~e~G~~~v~~~~~---~~l~~~l~~~~~~~~~~~~~v~~~H~d~v 150 (527)
T 3tqi_A 75 PAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTA-KAEFGHAQLRVLNP---AFLFDGIEDQVSPQGEPLLDVWMSHGDIV 150 (527)
T ss_dssp CCSTTTSSSCEEEETHHHHHHHHHSSSCBC------CEEEEEEEESSC---TTTTSSCCSBCCTTSCCEEEEEEESSSCB
T ss_pred HHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCC-CccccceEEEEcCC---ChhhcCCccccccccccceEEEEEcccch
Confidence 222 45789999 9999999999999999987 57889988887643 679999987 588999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
.. +|++++++|+++++.++|+++.+++ +||+|||||++++++|.
T Consensus 151 ~~---lp~g~~v~A~s~~~~i~ai~~~~~~-~~GvQFHPE~~~t~~G~ 194 (527)
T 3tqi_A 151 SE---LPPGFEATACTDNSPLAAMADFKRR-FFGLQFHPEVTHTPQGH 194 (527)
T ss_dssp CS---CCTTCEEEEEETTEEEEEEECSSSC-EEEESBCSSSTTSTTHH
T ss_pred hc---cCCCCEEEEEeCCCcEEEEEcCCCC-EEEEEeccccccccccc
Confidence 87 7899999999999999999998776 99999999999998763
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=236.54 Aligned_cols=171 Identities=24% Similarity=0.316 Sum_probs=143.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC-CCCCCCcc---hHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG-PGAPQESG---ISFRTVL 86 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG-~~~~~~~~---~~~~~i~ 86 (203)
-|+||++||++++|+.++.++|+++ |+.+.+++++ .+++++. ++|||||+|| ++++++.. .+.+.+.
T Consensus 12 ~~~~i~~id~~~~~~~~~~~~l~~~------G~~~~vv~~~-~~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~ 82 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWTHREWRVLREL------GVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYID 82 (212)
T ss_dssp CCCBEEEEEESCCTTCHHHHHHHHT------TCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHH
T ss_pred ccceEEEEeCCCccHHHHHHHHHHC------CCEEEEEeCC-CCHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHH
Confidence 3789999999999999999999999 9999888875 3455555 4899999999 88887652 2233332
Q ss_pred HhCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeE
Q 037843 87 ELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELE 164 (203)
Q Consensus 87 ~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~ 164 (203)
++++|+| |+|||+|+.++||++.+.. ..+.|+..+.+.. .+++|+++++.+.++++|++.|.. +|++++
T Consensus 83 --~~~~PiLGIC~G~Qll~~~lGg~v~~~~-~~~~G~~~v~~~~---~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~ 153 (212)
T 2a9v_A 83 --DHNYPILGICVGAQFIALHFGASVVKAK-HPEFGKTKVSVMH---SENIFGGLPSEITVWENHNDEIIN---LPDDFT 153 (212)
T ss_dssp --HCCSCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEESC---CCGGGTTCCSEEEEEEEEEEEEES---CCTTEE
T ss_pred --hCCCCEEEEChHHHHHHHHhCCEEEcCC-CcccCceeeEECC---CChhHhcCCCceEEEeEhhhhHhh---CCCCcE
Confidence 4679999 9999999999999999886 5678888887754 267999998889999999999986 679999
Q ss_pred EEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 165 VTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 165 ~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++|+++++.++|+++++++ ++|+|||||++.++.|
T Consensus 154 vlA~s~d~~i~ai~~~~~~-i~gvQfHPE~~~~~~g 188 (212)
T 2a9v_A 154 LAASSATCQVQGFYHKTRP-IYATQFHPEVEHTQYG 188 (212)
T ss_dssp EEEECSSCSCSEEEESSSS-EEEESSCTTSTTSTTH
T ss_pred EEEEeCCCCEEEEEECCCC-EEEEEeCCCCCCCccH
Confidence 9999999999999998766 9999999999987654
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=236.01 Aligned_cols=174 Identities=21% Similarity=0.304 Sum_probs=136.6
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-h
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-L 88 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~ 88 (203)
++.++|+|||++++|..++.++++++ |+.+.+++++ .+.+++...++|||||+||++++++.... .+.++ +
T Consensus 22 ~~~~~I~iiD~g~~~~~~i~~~l~~~------G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~-~~~~~~~ 93 (218)
T 2vpi_A 22 SMEGAVVILDAGAQYGKVIDRRVREL------FVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIF 93 (218)
T ss_dssp -CTTCEEEEECSTTTTHHHHHHHHHT------TCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CC-CCCGGGG
T ss_pred ecCCeEEEEECCCchHHHHHHHHHHC------CCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccch-hHHHHHH
Confidence 34578999999999999999999999 9999998875 45666654468999999999877642210 01122 3
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
+.++|+| |+|||+|+.++||++.+.. ..+.|+..+.++. .++||+++++.+.++++|++.|.. +|++++++
T Consensus 94 ~~~~PilGIC~G~Qll~~~~GG~v~~~~-~~~~G~~~v~~~~---~~~l~~~l~~~~~v~~~H~~~v~~---l~~~~~vl 166 (218)
T 2vpi_A 94 TIGKPVLGICYGMQMMNKVFGGTVHKKS-VREDGVFNISVDN---TCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVV 166 (218)
T ss_dssp TSSCCEEEETHHHHHHHHHTTCCEEEEE-ECSCEEEEEEECT---TSGGGTTCCSEEEEEECSEEEESS---CCTTCEEE
T ss_pred HcCCCEEEEcHHHHHHHHHhCCceEeCC-CCcccEEEEEEcc---CChhHhcCCCCcEEeehhhhHhhh---cCCCCEEE
Confidence 5689999 9999999999999999986 4678888887764 278999998888999999999976 67899999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|++ ++.++++++.+++ ++|+|||||++.++.|
T Consensus 167 A~s-~~~i~ai~~~~~~-i~gvQfHPE~~~~~~g 198 (218)
T 2vpi_A 167 ARS-GNIVAGIANESKK-LYGAQFHPEVGLTENG 198 (218)
T ss_dssp EEE-TTEEEEEEETTTT-EEEESSCTTSTTSTTH
T ss_pred EEc-CCeEEEEEECCCC-EEEEEcCCCCCCChhH
Confidence 999 5689999988776 9999999999987654
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=256.87 Aligned_cols=179 Identities=22% Similarity=0.328 Sum_probs=149.3
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch--H-HHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI--S-FRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~--~-~~~i~~ 87 (203)
...+|+|||++++|++++.++++++ |+.+++++++ .+.+++...++||||||||++++++.+. + ..+++.
T Consensus 6 ~~~~IlilD~Gs~~~~~I~r~lre~------Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~ 78 (556)
T 3uow_A 6 EYDKILVLNFGSQYFHLIVKRLNNI------KIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEY 78 (556)
T ss_dssp -CCEEEEEESSCTTHHHHHHHHHHT------TCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHH
T ss_pred CCCEEEEEECCCccHHHHHHHHHHC------CCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHH
Confidence 3478999999999999999999999 9999999875 5667776567899999999999886542 2 333333
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccc----------------------------cccccc
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE----------------------------EADGLL 136 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~----------------------------~~~~lf 136 (203)
..+++|+| |+|||+|+.++||+|.+.. ..++|...+.+.... ..++||
T Consensus 79 a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~-~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf 157 (556)
T 3uow_A 79 FLEKKIPIFGICYGMQEIAVQMNGEVKKSK-TSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLF 157 (556)
T ss_dssp HHHTTCCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGG
T ss_pred hhhcCCCEEEECHHHHHHHHHhCCcEecCC-CcccCCcceeeccCcccccccceecccccccccccccccccccccchhh
Confidence 24679999 9999999999999999886 577888777765432 124799
Q ss_pred cCC-CCceEEeecccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 137 AGL-SNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 137 ~~~-~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++ ++.+.++++|++.|.. +|++++++|+++++.++|+++.+++ +||+|||||+++++.|.
T Consensus 158 ~gl~~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~i~ai~~~~~~-i~GvQFHPE~~~~~~G~ 219 (556)
T 3uow_A 158 ENIKSDITTVWMNHNDEVTK---IPENFYLVSSSENCLICSIYNKEYN-IYGVQYHPEVYESLDGE 219 (556)
T ss_dssp TTCCSSEEEEEEEEEEEEEE---CCTTCEEEEEETTEEEEEEEETTTT-EEEESSCTTSTTSTTHH
T ss_pred cccccCceEEEEEccceeec---cCCCcEEEEEeCCCCEEEEEECCCC-EEEEEcCCCCCccccch
Confidence 999 8889999999999987 7899999999999999999998776 99999999999998763
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=254.21 Aligned_cols=172 Identities=24% Similarity=0.387 Sum_probs=146.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~ 91 (203)
++|+|||++++|++++.++++++ |+.+++++++ .+.+++...++|||||||||+++++.... .+.+. ++.+
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~------G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g 79 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVREL------GVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAG 79 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHT------TCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSS
T ss_pred CEEEEEECCCccHHHHHHHHHHC------CCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCC
Confidence 67999999999999999999999 9999999875 56777776678999999999998765421 01122 3567
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCC--------ceEEeecccceeecCCCCCC
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSN--------PFTAGRYHGLVIEKDSFRSD 161 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~--------~~~~~~~H~~~v~~~~l~~~ 161 (203)
+||| |+|||+|+.++||+|.+.. .+++|+..+.+... ++||++++. .+.++++|+|.|.. +|+
T Consensus 80 ~PvLGIC~G~Qlla~~~GG~V~~~~-~~e~G~~~v~~~~~---~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~---lp~ 152 (525)
T 1gpm_A 80 VPVFGVCYGMQTMAMQLGGHVEASN-EREFGYAQVEVVND---SALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPS 152 (525)
T ss_dssp SCEEEETHHHHHHHHHHTCEEECCS-SCEEEEEEEEECSC---CTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCT
T ss_pred CCEEEEChHHHHHHHHcCCEEEeCC-CcccceEEEEeCCC---CHhhccCccccccccccceEEEEEccceeee---CCC
Confidence 9999 9999999999999999987 57889888877542 679999987 78999999999987 789
Q ss_pred CeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 162 ELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 162 ~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+++++|+++++.++|+++.+++ +||+|||||+++++.|
T Consensus 153 g~~v~A~s~~~~i~ai~~~~~~-i~gvQFHPE~~~~~~g 190 (525)
T 1gpm_A 153 DFITVASTESCPFAIMANEEKR-FYGVQFHPEVTHTRQG 190 (525)
T ss_dssp TCEEEEECSSCSCSEEEETTTT-EEEESBCTTSTTSTTH
T ss_pred CCEEEEECCCCCEEEEEECCCC-EEEEecCCCCCcchhH
Confidence 9999999999999999998776 9999999999998765
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.88 Aligned_cols=170 Identities=25% Similarity=0.365 Sum_probs=143.5
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~ 92 (203)
||+|||++++|++++.++++++ |+.+++++++ .+.+++...++||||||||++++++.... ...++ ++.++
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~------G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~ 72 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLREL------RAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGL 72 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTT------TCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHC------CCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCC
Confidence 5999999999999999999999 9999999876 56788876678999999999998765421 01122 35789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
||| |+|||+|+.++||+|.+.. .++.|+..+.+.. ++||+++++.+.++++|+|.|.. +|++++++|+++
T Consensus 73 PvLGIC~G~Qlla~~~GG~v~~~~-~~e~G~~~v~~~~----~~l~~~~~~~~~v~~~H~~~v~~---lp~g~~v~A~s~ 144 (503)
T 2ywb_A 73 PLLGICYGMQLLAQELGGRVERAG-RAEYGKALLTRHE----GPLFRGLEGEVQVWMSHQDAVTA---PPPGWRVVAETE 144 (503)
T ss_dssp CEEEETHHHHHHHHTTTCEEECC----CEEEEECSEEC----SGGGTTCCSCCEEEEECSCEEEE---CCTTCEEEEECS
T ss_pred CEEEECHHHHHHHHHhCCeEeeCC-CCccceEEEEecC----cHHhhcCCCccEEEEECCCcccc---CCCCCEEEEEEC
Confidence 999 9999999999999999886 5678887766543 67999998889999999999987 789999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++.++|+++.+++ +||+|||||+++++.|
T Consensus 145 ~~~i~ai~~~~~~-~~gvQFHPE~~~~~~g 173 (503)
T 2ywb_A 145 ENPVAAIASPDGR-AYGVQFHPEVAHTPKG 173 (503)
T ss_dssp SCSCSEEECTTSS-EEEESBCTTSTTSTTH
T ss_pred CCCEEEEEeCCCC-EEEEecCCCccccccc
Confidence 9999999997776 9999999999998765
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=222.71 Aligned_cols=169 Identities=16% Similarity=0.180 Sum_probs=137.8
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCc-ch---HHHH
Q 037843 12 KNPIVVIDNYD-SFTYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQES-GI---SFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~-~~---~~~~ 84 (203)
+++|+||++.. ....++.+++++. |+++++++.+... ++++. ++|+|||+||++++++. .. ..++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~------G~~v~v~~~~~~~~~p~~~~--~~d~lIl~GGp~~~~d~~~~~~~~~~~ 74 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGE------HIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLAL 74 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHT------TCCEEEEEGGGTCCCCSCGG--GSSEEEECCCSSCTTSCCTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHC------CCeEEEEeccCCCcCcCccc--cCCEEEECCCCCcccccchHHHHHHHH
Confidence 46899998754 5578999999999 9999998754211 22333 58999999999988754 22 2455
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCC
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSD 161 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~ 161 (203)
|++ +..++||| |+|||+|+.++||+|.+.+ .+++|+.++.++..+..+++| ++++.+.++++|++.| . +|+
T Consensus 75 i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~-~~e~G~~~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~v-~---lp~ 148 (250)
T 3m3p_A 75 IRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSP-HAEIGWVRAWPQHVPQALEWL-GTWDELELFEWHYQTF-S---IPP 148 (250)
T ss_dssp HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEECSSHHHHHHH-SCSSCEEEEEEEEEEE-C---CCT
T ss_pred HHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCC-CCceeeEEEEEecCCCCcccc-cCCCccEEEEEcccee-e---cCC
Confidence 665 45689999 9999999999999999987 578999888886544446789 8888999999999999 4 679
Q ss_pred CeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 162 ELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 162 ~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+++++|+++++.++|+++++ ++||+|||||++.
T Consensus 149 ~~~vlA~s~~~~~~a~~~~~--~~~GvQfHPE~~~ 181 (250)
T 3m3p_A 149 GAVHILRSEHCANQAYVLDD--LHIGFQCHIEMQA 181 (250)
T ss_dssp TEEEEEEETTEEEEEEEETT--TEEEESSCTTCCH
T ss_pred CCEEEEEeCCCCEEEEEECC--eeEEEEeCCcCCH
Confidence 99999999999999999987 4999999999874
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=247.53 Aligned_cols=171 Identities=22% Similarity=0.321 Sum_probs=133.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG--ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~--~~~~~i~~~~ 89 (203)
..+|+|||++++|++++.+.++++ |+.+++++++ .+.+++...++|||||||||+++++.+ .+.+.+ ++
T Consensus 29 ~~~I~VLDfg~q~~~liar~lre~------Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~ 99 (697)
T 2vxo_A 29 EGAVVILDAGAQYGKVIDRRVREL------FVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FT 99 (697)
T ss_dssp CCCEEEEEEC--CHHHHHHHHHHT------TCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CCCCCGGG--TT
T ss_pred CCEEEEEECCCchHHHHHHHHHHC------CCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccchhHHHHH--Hh
Confidence 468999999999999999999999 9999999986 567777655799999999999987532 222211 35
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
.++||| |+|||+|+.++||++.+.. ..++|++.+.+... ++||+++++.+.++++|++.|.. +|++++++|
T Consensus 100 ~g~PvLGIC~G~QlLa~~lGG~v~~~~-~~e~G~~~v~~~~~---~~Lf~~l~~~~~v~~~H~~~V~~---lp~g~~vlA 172 (697)
T 2vxo_A 100 IGKPVLGICYGMQMMNKVFGGTVHKKS-VREDGVFNISVDNT---CSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVA 172 (697)
T ss_dssp SSCCEEEEEHHHHHHHHHTTCCBCC--------CEEEEECTT---SGGGTTCCSEEEECCCSSCCBSS---CCTTCEEEE
T ss_pred CCCCEEEECHHHHHHHHHhCCeEeecC-CCccceEEEEecCC---ChhhhcCCccCcceeecccceec---CCCCeEEEE
Confidence 679999 9999999999999999887 56889988887543 68999998889999999999976 679999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++++ .++|+++.+++ +||+|||||+++++.|
T Consensus 173 ~s~~-~i~ai~~~~~~-i~GvQFHPE~~~t~~g 203 (697)
T 2vxo_A 173 RSGN-IVAGIANESKK-LYGAQFHPEVGLTENG 203 (697)
T ss_dssp EETT-EEEEEEETTTT-EEEESSCTTSSSSTTH
T ss_pred EeCC-ceEEEEeCCCC-EEEEEecccCCCCccc
Confidence 9965 99999998877 9999999999998875
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=222.10 Aligned_cols=167 Identities=18% Similarity=0.317 Sum_probs=133.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~ 90 (203)
..+|++||++. .+++.++|+++ |+.+.+++++ .+.+++...++|||||+|||+++.+.....++++++ +.
T Consensus 190 ~~~V~viD~G~--k~ni~r~L~~~------G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~ 260 (379)
T 1a9x_B 190 PFHVVAYDFGA--KRNILRMLVDR------GCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET 260 (379)
T ss_dssp CEEEEEEESSC--CHHHHHHHHHT------TEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTS
T ss_pred CCEEEEEECCC--hHHHHHHHHHC------CCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHc
Confidence 35899999954 58899999999 9999999986 567777766799999999999998766667778874 66
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAW 168 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~ 168 (203)
++||| |+|||+|+.++||++.+++.++..+++++..... . ..+.+.++|++.|..+++ |++++++++
T Consensus 261 ~~PILGIClG~QLLa~A~GG~v~k~~~gh~g~n~pv~~~~~---g-------~v~its~~H~~aV~~~~L-p~~~~v~a~ 329 (379)
T 1a9x_B 261 DIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEK---N-------VVMITAQNHGFAVDEATL-PANLRVTHK 329 (379)
T ss_dssp CCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTT---T-------EEEEEEEEEEEEECSTTC-CTTEEEEEE
T ss_pred CCCEEEECchHHHHHHHhCcEEEecccccccCceeeEecCC---C-------cEEEEecCccceEecccC-CCCeEEEEE
Confidence 89999 9999999999999999986443333355543221 1 123456799999976554 578999999
Q ss_pred c-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 169 T-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 169 s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+ +++.++|++++++| ++|+|||||.+..+.
T Consensus 330 s~~Dg~ieai~~~~~p-i~gVQFHPE~~~~p~ 360 (379)
T 1a9x_B 330 SLFDGTLQGIHRTDKP-AFSFQGNPEASPGPH 360 (379)
T ss_dssp ETTTCCEEEEEESSSS-EEEESSCTTCSSSCS
T ss_pred eCCCCcEEEEEECCCC-EEEEEeCCcCCCCcc
Confidence 8 68899999998877 999999999998764
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=239.80 Aligned_cols=169 Identities=22% Similarity=0.327 Sum_probs=139.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-----HHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-----SFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-----~~~~i~ 86 (203)
.++|+|||++++|++++.++++++ |+.+++++++.. .++ .++|||||+|||+++++.+. ..++|+
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~------G~~v~Vv~~d~~--~~~--~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~ 515 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSL------GLATEVCGVHDA--VDL--ARYDVVVMGPGPGDPSDAGDPRIARLYAWLR 515 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHT------TCEEEEEETTCC--CCG--GGCSEEEECCCSSCTTCTTSHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHC------CCEEEEEECCCc--ccc--cCCCEEEECCCCCChhhhhhhhHHHHHHHHH
Confidence 568999999999999999999999 999999987632 122 26899999999999998763 345566
Q ss_pred H-hCCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCC
Q 037843 87 E-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDE 162 (203)
Q Consensus 87 ~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~ 162 (203)
+ +..++||| |+|||+|+.++||+|.+.. ...+|+ ..+.+.. ++++.+++..+.++++|.+.+.. +|++
T Consensus 516 ~a~~~~iPiLGIClG~QlLa~alGG~V~~~~-~~~~G~~~~i~~~~----~~l~~~~~~~~~v~~~h~~~~~~---lp~g 587 (645)
T 3r75_A 516 HLIDEGKPFMAVCLSHQILNAILGIPLVRRE-VPNQGIQVEIDLFG----QRERVGFYNTYVAQTVRDEMDVD---GVGT 587 (645)
T ss_dssp HHHHHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEEETT----EEEEEEEEEEEEEBCSCSEEEET---TTEE
T ss_pred HHHHCCCCEEEECHHHHHHHHHhCCEEEcCC-CcccccceEEeeec----CcceecCCCcEEEEEehhhcccc---CCCC
Confidence 5 46789999 9999999999999999987 456676 5665542 56888888888888888777655 6799
Q ss_pred eEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 163 LEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 163 ~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++++|+++++.++++++++ +||+|||||++.++.|.
T Consensus 588 ~~v~A~s~dg~i~Ai~~~~---~~GVQFHPE~~~t~~G~ 623 (645)
T 3r75_A 588 VAISRDPRTGEVHALRGPT---FSSMQFHAESVLTVDGP 623 (645)
T ss_dssp EEEEECTTTCBEEEEEETT---EEEESSBTTSTTCTTHH
T ss_pred eEEEEEcCCCcEEEEEcCC---EEEEEeCCeecCCcchH
Confidence 9999999999999999874 79999999999988763
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=211.26 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=135.4
Q ss_pred CcEEEEeCCch-HHHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCc----ch-----
Q 037843 13 NPIVVIDNYDS-FTYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQES----GI----- 80 (203)
Q Consensus 13 ~~i~iid~~~~-~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~----~~----- 80 (203)
+||++|.+... ....+.+++++. |+++.+++.+... ++++. ++|+|||+||++++.+. ..
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~------g~~~~~~~~~~~~~~p~~~~--~~d~lii~GGp~~~~~~~~~~~~~~~~~ 72 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALR------GHDVSMTKVYRYEKLPKDID--DFDMLILMGGPQSPSSTKKEFPYYDAQA 72 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHT------TCEEEEEEGGGTCCCCSCGG--GCSEEEECCCSSCTTCCTTTCTTCCHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHC------CCeEEEEeeeCCCCCCCCcc--ccCEEEECCCCCCcccccccCcccchHH
Confidence 47999986543 257788999988 9999988754211 22233 68999999999997532 11
Q ss_pred HHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCC
Q 037843 81 SFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDS 157 (203)
Q Consensus 81 ~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~ 157 (203)
..++|++ +..++||| |+|||+|+.++||+|.+.. ..++|+.++..+..++++++|++++..+.++++|++.. .
T Consensus 73 ~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~-~~~~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~-~-- 148 (236)
T 3l7n_A 73 EVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSP-KKEIGNYLISLTEAGKMDSYLSDFSDDLLVGHWHGDMP-G-- 148 (236)
T ss_dssp HHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEE-EEEEEEEEEEECTTGGGCGGGTTSCSEEEEEEEEEEEC-C--
T ss_pred HHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCC-CceeeeEEEEEccCcccChHHhcCCCCcEEEEecCCcc-c--
Confidence 3566776 46789999 9999999999999999987 57889988988776656889999999999999999874 3
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCC
Q 037843 158 FRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 158 l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+|++++++|+++++.+++++..+ ++||+|||||++
T Consensus 149 -lp~~~~vla~s~~~~~~a~~~~~--~v~gvQfHPE~~ 183 (236)
T 3l7n_A 149 -LPDKAQVLAISQGCPRQIIKFGP--KQYAFQCHLEFT 183 (236)
T ss_dssp -CCTTCEEEEECSSCSCSEEEEET--TEEEESSBSSCC
T ss_pred -CCChheEEEECCCCCEEEEEECC--CEEEEEeCCCCC
Confidence 56899999999999999999876 499999999987
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=207.53 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=132.4
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCcc------hHH
Q 037843 12 KNPIVVIDNYD-SFTYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQESG------ISF 82 (203)
Q Consensus 12 ~~~i~iid~~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~~------~~~ 82 (203)
..||+||.+.. .+..++.+++++. |+++.+++++... ++++. ++|||||+||++++++.. ...
T Consensus 12 ~~~~~~i~~~~~~~~~~i~~~l~~~------G~~v~v~~~~~~~~~~~~l~--~~Dglil~GG~~~~~~~~~~~~l~~~~ 83 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLGMMEDIFREK------NWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEF 83 (239)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHT------TCEEEEECGGGTCCCSSCGG--GCSEEEECCCSCCTTCTTTCTHHHHHH
T ss_pred eeEEEEEECCCCCCchHHHHHHHhC------CCcEEEeCCcCccccccchh--cCCEEEECCCCccccCCccChhHHHHH
Confidence 46899997654 3467889999998 9999877754211 12233 689999999998887542 135
Q ss_pred HHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCC
Q 037843 83 RTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFR 159 (203)
Q Consensus 83 ~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~ 159 (203)
+++++. ++++|+| |+|||+|+.++||++.+...+++.|+.++.... .+++|+++++.+.++++|++.+. +
T Consensus 84 ~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~~v~~~~---~~~l~~~~~~~~~~~~~H~~~v~----l 156 (239)
T 1o1y_A 84 QLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVS---DNKFFREFPDRLRVFQWHGDTFD----L 156 (239)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECC---CCGGGTTSCSEEEEEEEESEEEC----C
T ss_pred HHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccEEEEECC---CCchHHhCCCCceeEeecCCccc----c
Confidence 666663 5779999 999999999999999998733778887777543 37899999888999999999983 5
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 160 SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 160 ~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|++++++|+++++.++++++++ ++|+|||||++.
T Consensus 157 p~~~~vlA~s~~~~iea~~~~~---i~gvQfHPE~~~ 190 (239)
T 1o1y_A 157 PRRATRVFTSEKYENQGFVYGK---AVGLQFHIEVGA 190 (239)
T ss_dssp CTTCEEEEECSSCSCSEEEETT---EEEESSBSSCCH
T ss_pred CCCCEEEEEcCCCCEEEEEECC---EEEEEeCccCCH
Confidence 6899999999998999999874 999999999863
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=202.62 Aligned_cols=158 Identities=24% Similarity=0.314 Sum_probs=120.5
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCC-CCC--Cc---------c-----hHHHHHHH-
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPG-APQ--ES---------G-----ISFRTVLE- 87 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~-~~~--~~---------~-----~~~~~i~~- 87 (203)
...++++++ |+.+.++++.. ...+++.+ ++|||||+||++ +|. .. . ...+++++
T Consensus 32 ~~~~~l~~a------G~~pv~lp~~~~~~~~~~l~-~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a 104 (254)
T 3fij_A 32 RYVDAIQKV------GGFPIALPIDDPSTAVQAIS-LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAA 104 (254)
T ss_dssp HHHHHHHHH------TCEEEEECCCCGGGHHHHHH-TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC------CCEEEEEeCCCchHHHHHHh-hCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHH
Confidence 456667776 88888887642 12333222 689999999986 222 11 0 03456666
Q ss_pred hCCCCcee--ehhHHHHHHHhCCeeccccc-------------cccccceeEEEcccccccccccCCCCceEEeecccce
Q 037843 88 LGPTMPLF--CMGLKCIGEALEGRLYVLLL-------------VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLV 152 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~gg~v~~~~~-------------~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~ 152 (203)
+++++||| |+|||+|+.++||++.+... ..+.|++.+.+... +.||+.+++.+.++++|++.
T Consensus 105 ~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~---s~l~~~~~~~~~v~~~H~~~ 181 (254)
T 3fij_A 105 LDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPT---SELAKHHPNKKLVNSLHHQF 181 (254)
T ss_dssp HHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTT---SSGGGTCCTTEEECCBCSCE
T ss_pred HHcCCCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCC---ChHHHhcCCcEEEEEeccch
Confidence 46789999 99999999999999976520 13456778877643 67888888888999999999
Q ss_pred eecCCCCCCCeEEEEEcCCCcEEEEEeC-CCCcEEEEcCCCCCCCC
Q 037843 153 IEKDSFRSDELEVTAWTEDGLIMAARHK-KYKHLHGVQFHPESILT 197 (203)
Q Consensus 153 v~~~~l~~~~~~~~a~s~~~~v~a~~~~-~~~~i~gvQfHPE~~~~ 197 (203)
|.. ++++++++|+++++.++|++++ ++|+++|+|||||++.+
T Consensus 182 v~~---l~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~ 224 (254)
T 3fij_A 182 IKK---LAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQ 224 (254)
T ss_dssp ESS---CCSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGG
T ss_pred hhc---cCCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCC
Confidence 976 6799999999999999999999 87779999999999875
|
| >4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-30 Score=200.29 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=111.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHH---HHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISF---RTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~---~~i~~ 87 (203)
|.++|+|||++.+|..++.++|+++ |+++++++ +++++. ++|+|||+ |+|++.+..... .+++.
T Consensus 1 M~~~I~iiD~g~~n~~si~~al~~~------G~~~~v~~----~~~~l~--~~D~lilP-G~g~~~~~~~~~~~~~~i~~ 67 (211)
T 4gud_A 1 MTQNVVIIDTGCANISSVKFAIERL------GYAVTISR----DPQVVL--AADKLFLP-GVGTASEAMKNLTERDLIEL 67 (211)
T ss_dssp --CCEEEECCCCTTHHHHHHHHHHT------TCCEEEEC----CHHHHH--HCSEEEEC-CCSCHHHHHHHHHHTTCHHH
T ss_pred CCCEEEEEECCCChHHHHHHHHHHC------CCEEEEEC----CHHHHh--CCCEEEEC-CCCCHHHHHHHHHhcChHHH
Confidence 3457999999999999999999999 99998864 367777 46999995 556654432211 12333
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccc----------------------cceeEEEcccccccccccCCCCc
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM----------------------GKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~----------------------g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
.+.++||| |+|||+|+.++|+++.+... ... ++..+.. ...+++|++++..
T Consensus 68 ~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~-~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~ 143 (211)
T 4gud_A 68 VKRVEKPLLGICLGMQLLGKLSEEKGQKADE-IVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQV---KEGHPLFNGIEPD 143 (211)
T ss_dssp HHHCCSCEEEETHHHHTTSSEECCC----CC-CEECCCSSSCEEEECCCTTSCSSEEEEECCEE---CTTCGGGTTCCTT
T ss_pred HHHcCCCEEEEchhHhHHHHHhCCcccccCC-ccccceeccceEEEcccCCcceeeccceeeee---eccChhhcCCCCC
Confidence 24679999 99999999999988765431 111 1112222 1237799999999
Q ss_pred eEEeecccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+.++++|++.+. .+..++|+++++...+....+++ +||+|||||++
T Consensus 144 ~~~~~~H~~~v~------~~~~~~a~~~~g~~~~~~v~~~~-v~GvQFHPE~s 189 (211)
T 4gud_A 144 AYFYFVHSFAMP------VGDYTIAQCEYGQPFSAAIQAGN-YYGVQFHPERS 189 (211)
T ss_dssp CCEEEEESEECC------CCTTEEEEEESSSEEEEEEEETT-EEEESSCGGGS
T ss_pred cEEEEEeeEEeC------CCCeEEEEecCCCeEEEEEeCCC-EEEEEccCEec
Confidence 999999999874 35567788877755444444455 99999999986
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-28 Score=196.25 Aligned_cols=176 Identities=19% Similarity=0.185 Sum_probs=119.7
Q ss_pred CcEEEE-eC-------CchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc--------H-HHHhccCCCEEEECCCCCCC
Q 037843 13 NPIVVI-DN-------YDSFTYNLCQYMGELELELSQGYHFEVYRNDELT--------V-AELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 13 ~~i~ii-d~-------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--------~-~~l~~~~~dgiil~GG~~~~ 75 (203)
.+|+|| |+ ++|+..+|.++..+. ++.+.+++.+..+ . +.+. ++|||||+||++++
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~------~~~v~v~~~~~~~~~~~~~~~~~~~~~--~~dgiil~GG~~~~ 80 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIAL------QVRLDILYVDSEELEGPNADEARKALL--GCDGIFVPGGFGNR 80 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHH------TCCEEEEEEEGGGGSSTTTHHHHHHHH--TCSEEEECCCCTTT
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhc------CCceEEeccChhhcccccchhHHHHHh--hCCEEEecCCCCCc
Confidence 688888 55 334555666666666 7777777654322 2 2233 68999999998875
Q ss_pred CCcchHHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccc--cc-------------------------cccceeEE
Q 037843 76 QESGISFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLL--VS-------------------------CMGKALVY 125 (203)
Q Consensus 76 ~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~-------------------------~~g~~~i~ 125 (203)
...+ ..++++. ++.++||| |+|||+|+.++||+|..... .. ..|++++.
T Consensus 81 ~~~~-~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~ 159 (273)
T 2w7t_A 81 GVDG-KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVY 159 (273)
T ss_dssp THHH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEE
T ss_pred Cchh-HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEE
Confidence 4443 3455555 35679999 99999999999999852110 00 13445555
Q ss_pred EcccccccccccCCCCceEEee--cccceeecCCC--C-CCCeEEEEEcCC----C-cEEEEEeCCCCcEEEEcCCCCCC
Q 037843 126 YNEKEEADGLLAGLSNPFTAGR--YHGLVIEKDSF--R-SDELEVTAWTED----G-LIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 126 ~~~~~~~~~lf~~~~~~~~~~~--~H~~~v~~~~l--~-~~~~~~~a~s~~----~-~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+... .+++++.++....+++ +|+|.|+++.+ + +++++++|++++ + .+++++++++|+++|+|||||++
T Consensus 160 ~~~~--~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~ 237 (273)
T 2w7t_A 160 IVEK--SSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFI 237 (273)
T ss_dssp ECCT--TSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGS
T ss_pred EecC--CcHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcC
Confidence 5321 2456555554455554 67898875311 2 578999999987 5 89999999988777999999999
Q ss_pred CCCC
Q 037843 196 LTSE 199 (203)
Q Consensus 196 ~~~~ 199 (203)
.++.
T Consensus 238 ~~~~ 241 (273)
T 2w7t_A 238 STPM 241 (273)
T ss_dssp CBTT
T ss_pred CCCC
Confidence 8775
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=200.09 Aligned_cols=181 Identities=16% Similarity=0.226 Sum_probs=124.6
Q ss_pred CCcEEEEeCCch--------H---HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc--CCCEEEECCCCCCCCCc
Q 037843 12 KNPIVVIDNYDS--------F---TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK--KPRGVVISPGPGAPQES 78 (203)
Q Consensus 12 ~~~i~iid~~~~--------~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~--~~dgiil~GG~~~~~~~ 78 (203)
++.|.|..+... + ..++.++|+++ |+.+.+++.+ .+.+++... ++|||||+||++++...
T Consensus 30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------G~~~~vv~~~-~~~~~i~~~l~~~dglil~GG~~~v~p~ 102 (315)
T 1l9x_A 30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESA------GARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRS 102 (315)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHT------TCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTC
T ss_pred CCEEEEECCcccccccccCcceehHHHHHHHHHHC------CCEEEEEecC-CCHHHHHHHHhcCCEEEEeCCCcccChh
Confidence 467888743211 1 23577888888 9999998875 344554321 58999999999887543
Q ss_pred c------hHHHHHHHh--CC-CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCc----
Q 037843 79 G------ISFRTVLEL--GP-TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNP---- 142 (203)
Q Consensus 79 ~------~~~~~i~~~--~~-~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~---- 142 (203)
. .+.+.+++. .. ++||| |+|||+|+.++||++.... ...+|. .++......+.++||+++++.
T Consensus 103 ~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~-~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~ 181 (315)
T 1l9x_A 103 DYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLS 181 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEE-EEEEEEEECCEECSTTTTCSTTTTSCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccccc-ccccCCCCCeeeccCCCCChHHHhcChhhhhh
Confidence 1 133444443 22 69999 9999999999999976544 233454 456554333457899888643
Q ss_pred ----eEEeecccceeecCC-----CCCCCeEEEEEcCCCcEEEE---EeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 143 ----FTAGRYHGLVIEKDS-----FRSDELEVTAWTEDGLIMAA---RHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 143 ----~~~~~~H~~~v~~~~-----l~~~~~~~~a~s~~~~v~a~---~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
..++++|+++|.++. -++++++++|+++++.++++ ++++++ ++|+|||||+..+++|.
T Consensus 182 l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~-i~GVQfHPE~~~~e~~~ 251 (315)
T 1l9x_A 182 LAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKAPYEWKN 251 (315)
T ss_dssp HHHSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSC-EEEESSCTTHHHHCCSS
T ss_pred ccccceEEEhhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCC-EEEEEeCCCCCcccccc
Confidence 123459999997210 04579999999988876655 666666 99999999998877764
|
| >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=184.00 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=125.8
Q ss_pred CCCcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC--------cchH
Q 037843 11 DKNPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE--------SGIS 81 (203)
Q Consensus 11 ~~~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~--------~~~~ 81 (203)
||++|+||++.+.+. .++.++|+.. |+.+.+++.++ ++. ++|+|||+||.+...+ ....
T Consensus 1 m~~~i~il~~~~~~~~~~~~~~l~~~------g~~~~~~~~~~----~~~--~~d~lil~Gg~~~~~~~~~~~~~~~~~~ 68 (213)
T 3d54_D 1 MKPRACVVVYPGSNCDRDAYHALEIN------GFEPSYVGLDD----KLD--DYELIILPGGFSYGDYLRPGAVAAREKI 68 (213)
T ss_dssp CCCEEEEECCTTEEEHHHHHHHHHTT------TCEEEEECTTC----CCS--SCSEEEECEECGGGGCSSTTHHHHTSTT
T ss_pred CCcEEEEEEcCCCCccHHHHHHHHHC------CCEEEEEecCC----Ccc--cCCEEEECCCCchhhhhccccccccHHH
Confidence 468899999988774 7788999988 99998886531 232 6899999999754332 1234
Q ss_pred HHHHHHh-CCCCcee--ehhHHHHHHH--hCCeecccccc-ccccceeEEEcccccccccccCCCC--ceEEeecc---c
Q 037843 82 FRTVLEL-GPTMPLF--CMGLKCIGEA--LEGRLYVLLLV-SCMGKALVYYNEKEEADGLLAGLSN--PFTAGRYH---G 150 (203)
Q Consensus 82 ~~~i~~~-~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~-~~~g~~~i~~~~~~~~~~lf~~~~~--~~~~~~~H---~ 150 (203)
.++++++ ++++||| |+|+|+|+.+ ++|++.+.... .+.|+..+.+.. ..+++|+++++ .+.++.+| +
T Consensus 69 ~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~--~~~~l~~~~~~~~~~~~~~~H~~~s 146 (213)
T 3d54_D 69 AFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN--NDTPFTNAFEKGEKIRIPIAHGFGR 146 (213)
T ss_dssp HHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC--CSSTTSTTSCTTCEEEEECCBSSCE
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC--CCCceeeccCCCCEEEEEeecCceE
Confidence 5667663 5679999 9999999999 99999877522 256777777752 23689988875 46666689 5
Q ss_pred ceeecCCCCCCCeEEEEEcCC-----CcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 151 LVIEKDSFRSDELEVTAWTED-----GLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 151 ~~v~~~~l~~~~~~~~a~s~~-----~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+.+. ++++.++|++++ +.++|+++.+.+ ++|+|||||++..
T Consensus 147 ~~~~-----~~~~~~~a~~~~~ng~~~~i~a~~~~~~~-~~gvQfHPE~~~~ 192 (213)
T 3d54_D 147 YVKI-----DDVNVVLRYVKDVNGSDERIAGVLNESGN-VFGLMPHPERAVE 192 (213)
T ss_dssp EECS-----SCCEEEEEESSCSSCCGGGEEEEECSSSC-EEEECSCSTTTTS
T ss_pred EEec-----CCCcEEEEEcCCCCCCccceeEEEcCCCC-EEEEeCCHHHhcC
Confidence 5553 378999999865 489999986655 9999999999983
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=183.21 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=112.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG----ISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~----~~~~~i~~~ 88 (203)
++|+|||+.+++... .++++++ |+.+.+++.+ +++. ++|||||+||++++++.. .+.+.++
T Consensus 1 m~i~vl~~~g~~~~~-~~~l~~~------G~~~~~~~~~----~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~-- 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEH-EEAIKKA------GYEAKKVKRV----EDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK-- 65 (186)
T ss_dssp CEEEEECSSSCCHHH-HHHHHHT------TSEEEEECSG----GGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--
T ss_pred CEEEEEecCcchHHH-HHHHHHC------CCEEEEECCh----HHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--
Confidence 479999998777665 4889998 9988887642 2344 579999999987654321 1234444
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccc------cccccccCCCCceEEeecccceeecCCCC-
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE------EADGLLAGLSNPFTAGRYHGLVIEKDSFR- 159 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~------~~~~lf~~~~~~~~~~~~H~~~v~~~~l~- 159 (203)
+.++||| |+|||+|+.++||++.... ...+. +.....+ ..+.+|.++ +++.++++|++.|.. +
T Consensus 66 ~~~~PilGIC~G~Qll~~~~gg~~~~lg--~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~v~~---l~ 137 (186)
T 2ywj_A 66 NSNLPILGTCAGMVLLSKGTGINQILLE--LMDIT--VKRNAYGRQVDSFEKEIEFKDL-GKVYGVFIRAPVVDK---IL 137 (186)
T ss_dssp TCCCCEEEETHHHHHHSSCCSSCCCCCC--CSSEE--EETTTTCSSSCCEEEEEEETTT-EEEEEEESSCCEEEE---EC
T ss_pred hcCCcEEEECHHHHHHHHHhCCCcCccC--CCcee--EEeccCCCcccceecccccccC-CcEEEEEEecceeee---cC
Confidence 6789999 9999999999999854321 11111 1100000 113466666 678899999999976 6
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 160 SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 160 ~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|++++++|++ ++.++|++++ +++|+|||||++.
T Consensus 138 ~~~~~v~a~s-d~~~~a~~~~---~~~gvQfHPE~~~ 170 (186)
T 2ywj_A 138 SDDVEVIARD-GDKIVGVKQG---KYMALSFHPELSE 170 (186)
T ss_dssp CTTCEEEEEE-TTEEEEEEET---TEEEESSCGGGST
T ss_pred CCCeEEEEEE-CCEEEEEeeC---CEEEEECCCCcCC
Confidence 7899999999 6789999974 4999999999875
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-26 Score=189.00 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=118.9
Q ss_pred CCcEEEE-eC-CchH-HHHHHHHHHHhhhhhcCCceEEEEeCCc--c-------cHHH-------HhccCCCEEEECCCC
Q 037843 12 KNPIVVI-DN-YDSF-TYNLCQYMGELELELSQGYHFEVYRNDE--L-------TVAE-------LKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~ii-d~-~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~--~-------~~~~-------l~~~~~dgiil~GG~ 72 (203)
..+|+|| |+ +.+. ..++.++|++++.+ .+..+.++..+. . ++++ +. ++|||||+||+
T Consensus 25 ~~~Iavv~d~~~~~~s~~si~~~L~~~G~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~dgiil~GG~ 100 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDCYASVFKALEHSALA--INHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLC--KADGILVPGGF 100 (289)
T ss_dssp EEEEEEEESCSSCCGGGHHHHHHHHHHHHH--TTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHH--HCSEEEECSCC
T ss_pred ceEEEEEecCcCCCccHHHHHHHHHHhhhh--hCCceEEEEechhhcccccccCChhhhhhHHHHHh--hCCEEEecCCC
Confidence 3579999 88 6655 45788888887211 022344443321 1 1222 33 58999999999
Q ss_pred CCCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccc--c-----------------c---------cccc
Q 037843 73 GAPQESGISFRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLL--V-----------------S---------CMGK 121 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~-----------------~---------~~g~ 121 (203)
+++... ...++++++ +.++||| |+|||+|+.++||++.+... . + +.|+
T Consensus 101 ~~~~~~-~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~~g~ 179 (289)
T 2v4u_A 101 GIRGTL-GKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGI 179 (289)
T ss_dssp SSTTHH-HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCEEEE
T ss_pred CchhHH-HHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccccce
Confidence 874432 245566663 6789999 99999999999999852110 0 0 0233
Q ss_pred eeEEEcccccccccccCCCCceEEe--ecccceeecCCC--CC-CCeEEEEEcCCCc-EEEEEeCCCCcEEEEcCCCCCC
Q 037843 122 ALVYYNEKEEADGLLAGLSNPFTAG--RYHGLVIEKDSF--RS-DELEVTAWTEDGL-IMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 122 ~~i~~~~~~~~~~lf~~~~~~~~~~--~~H~~~v~~~~l--~~-~~~~~~a~s~~~~-v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+++.+... .+.+++.++..+.++ +.|+|.|+++.+ ++ ++++++|+++++. ++|++++++|+++|+|||||+.
T Consensus 180 ~~v~~~~~--~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQfHPE~~ 257 (289)
T 2v4u_A 180 RRTVFKTE--NSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFS 257 (289)
T ss_dssp EEEEESCS--CCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESSBGGGG
T ss_pred EEEEEecC--CCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEECCCCCC
Confidence 55555311 244555555434444 456777765422 45 8999999999986 9999999888667999999999
Q ss_pred CCCC
Q 037843 196 LTSE 199 (203)
Q Consensus 196 ~~~~ 199 (203)
.++.
T Consensus 258 ~~~~ 261 (289)
T 2v4u_A 258 SRPM 261 (289)
T ss_dssp CBTT
T ss_pred CCCC
Confidence 8764
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-26 Score=179.19 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=114.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRT 84 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~ 84 (203)
|+++|+|||++.++..++.++|++. |+.+.+++.+ +++. ++|+|||+| ++++.+. ....++
T Consensus 1 M~~~I~iid~~~~~~~~~~~~l~~~------G~~~~~~~~~----~~l~--~~d~lil~G-~g~~~~~~~~l~~~~~~~~ 67 (200)
T 1ka9_H 1 MRMKALLIDYGSGNLRSAAKALEAA------GFSVAVAQDP----KAHE--EADLLVLPG-QGHFGQVMRAFQESGFVER 67 (200)
T ss_dssp --CEEEEECSSCSCHHHHHHHHHHT------TCEEEEESST----TSCS--SCSEEEECC-CSCHHHHHHTTSSSCTHHH
T ss_pred CccEEEEEeCCCccHHHHHHHHHHC------CCeEEEecCh----HHcc--cCCEEEECC-CCcHHHHHHHHHhcCHHHH
Confidence 3468999998877788889999998 9999888643 2333 689999955 4554221 224566
Q ss_pred HHH-hCCCCcee--ehhHHHHHHH---hC---------Ceecccc--ccccccceeEEEcccccccccccCCCCceEEee
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEA---LE---------GRLYVLL--LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGR 147 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a---~g---------g~v~~~~--~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~ 147 (203)
|++ ++.++||| |+|||+|+.+ +| +++.+.. ..++.|++.+.++. + |.+++. +.+++
T Consensus 68 i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~-----~-l~~~~~-~~~~~ 140 (200)
T 1ka9_H 68 VRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGG-----A-FAPLTG-RHFYF 140 (200)
T ss_dssp HHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECG-----G-GGGGTT-CEEEE
T ss_pred HHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEEEech-----h-hhcCCC-CCEEE
Confidence 776 46789999 9999999999 68 6666553 12346776666542 3 777776 88899
Q ss_pred cccceeecCCCCCCCeEEEEEcCC-C-cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 148 YHGLVIEKDSFRSDELEVTAWTED-G-LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 148 ~H~~~v~~~~l~~~~~~~~a~s~~-~-~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+|++.+ . .+++ .+ |++++ + .++++.+++ +++|+|||||++.
T Consensus 141 ~Hs~~~-~---~~~~-~v-a~s~~~g~~~~~~~~~~--~i~gvQfHPE~~~ 183 (200)
T 1ka9_H 141 ANSYYG-P---LTPY-SL-GKGEYEGTPFTALLAKE--NLLAPQFHPEKSG 183 (200)
T ss_dssp EESEEC-C---CCTT-CC-EEEEETTEEEEEEEECS--SEEEESSCTTSSH
T ss_pred eccccc-C---CCCC-cE-EEEEeCCeEEEEEEeeC--CEEEEecCCCcCc
Confidence 999999 6 3343 56 87765 5 788888876 4999999999985
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=174.67 Aligned_cols=161 Identities=22% Similarity=0.306 Sum_probs=113.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~ 87 (203)
|+||+|||+.++|...+ +++++. |+.+.+++.. +++. ++|+|||+||+..+.+. ..+.+++++
T Consensus 1 ~m~I~il~~~~~~~~~~-~~l~~~------g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~ 67 (196)
T 2nv0_A 1 MLTIGVLGLQGAVREHI-HAIEAC------GAAGLVVKRP----EQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLRE 67 (196)
T ss_dssp CCEEEEECSSSCCHHHH-HHHHHT------TCEEEEECSG----GGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHH
T ss_pred CcEEEEEEccCCcHHHH-HHHHHC------CCEEEEeCCh----HHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHH
Confidence 46899999988888776 888888 9988877542 2444 58999999998655431 122566666
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEccc--c------cccccccCCCCceEEeecccceeecC
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK--E------EADGLLAGLSNPFTAGRYHGLVIEKD 156 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~------~~~~lf~~~~~~~~~~~~H~~~v~~~ 156 (203)
.++++|+| |+|||+|+.++|+++.+. .|..++..... + ..+.++.++++++.++++|++.+..
T Consensus 68 ~~~~~~pilgIC~G~q~l~~~~gg~~~~~-----lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~- 141 (196)
T 2nv0_A 68 FAAQGKPMFGTCAGLIILAKEIAGSDNPH-----LGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE- 141 (196)
T ss_dssp HHHTTCCEEEETHHHHHHSBCCC----CC-----CCCSCEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEE-
T ss_pred HHHCCCcEEEECHHHHHHHHHhcCCCCCc-----ccCCceeEeccCCCcccccccCCcccccCCCceEEEEEecceecc-
Confidence 36789999 999999999999976432 23222221110 0 0134556676788899999999976
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 157 SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 157 ~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+|++++++|++ ++.+++++.. +++|+|||||++..
T Consensus 142 --~~~~~~v~a~~-d~~~~a~~~~---~~~gvQfHPE~~~~ 176 (196)
T 2nv0_A 142 --AGENVEVLSEH-NGRIVAAKQG---QFLGCSFHPELTED 176 (196)
T ss_dssp --ECTTCEEEEEE-TTEEEEEEET---TEEEESSCTTSSSC
T ss_pred --cCCCcEEEEEE-CCEEEEEEEC---CEEEEEECCccCCc
Confidence 56899999998 5778999874 49999999998754
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-26 Score=199.03 Aligned_cols=174 Identities=20% Similarity=0.156 Sum_probs=118.5
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-----HHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-----VAELKRKKPRGVVISPGPGAPQESGISFRTVLE- 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-----~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~- 87 (203)
.++++|++.|+..++.++..+. |+++.+++.+... .++.. .++|||||+||+|++...+. .++++.
T Consensus 309 yv~l~D~y~Sv~~aL~~~g~~~------g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g~-i~~ir~a 380 (550)
T 1vco_A 309 YVKMPDAYLSLLEALRHAGIKN------RARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGK-VRAAQYA 380 (550)
T ss_dssp CC---CTTHHHHHHHHHHHHHT------TEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHH-HHHHHHH
T ss_pred eEEEEecHHHHHHHHHHHHHHc------CCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhhh-HHHHHHH
Confidence 4567799999999998888888 9999888654321 22322 26899999999998865443 355555
Q ss_pred hCCCCcee--ehhHHHHHHHhCCeecccccc--ccc---------------------------cceeEEEcccccccccc
Q 037843 88 LGPTMPLF--CMGLKCIGEALEGRLYVLLLV--SCM---------------------------GKALVYYNEKEEADGLL 136 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~--~~~---------------------------g~~~i~~~~~~~~~~lf 136 (203)
.++++|+| |+|||+|+.++||++.++... .+. |++++.+. +++++
T Consensus 381 ~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~----~~s~l 456 (550)
T 1vco_A 381 RERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIK----PGTLL 456 (550)
T ss_dssp HHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEEC----TTSHH
T ss_pred HHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEc----cCchh
Confidence 35789999 999999999999998865411 111 11122221 13344
Q ss_pred cCCCCceE--EeecccceeecC---CCCCCCeEEEEEcCCC------cEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 137 AGLSNPFT--AGRYHGLVIEKD---SFRSDELEVTAWTEDG------LIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 137 ~~~~~~~~--~~~~H~~~v~~~---~l~~~~~~~~a~s~~~------~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
..++.... ..+.|+|.|+.. .+++++++++|++.++ .+++++++++|+++|+|||||++.++.
T Consensus 457 ~~iy~~~~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~ 530 (550)
T 1vco_A 457 HRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPM 530 (550)
T ss_dssp HHHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTT
T ss_pred hHhcCCceeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCC
Confidence 33332222 356888888542 2223689999999773 899999999884449999999998875
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=172.48 Aligned_cols=158 Identities=19% Similarity=0.084 Sum_probs=109.5
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCC-----ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-c-----hH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQG-----YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-G-----IS 81 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-----~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~-----~~ 81 (203)
++|+|||++.++..++.++|+++ | +++++++..+ + .++|+|||+| ++++.+. . ..
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~------G~~~~~~~~~~~~~~~----~---~~~dglilpG-~g~~~~~~~~l~~~~~ 66 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRA------SENFEDVSIELVESPR----N---DLYDLLFIPG-VGHFGEGMRRLRENDL 66 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHH------STTBSSCEEEEECSCC----S---SCCSEEEECC-CSCSHHHHHHHHHTTC
T ss_pred CEEEEEecCCchHHHHHHHHHHc------CCCCCceEEEEECCCc----c---cCCCEEEECC-CCcHHHHHHHHHhhCH
Confidence 47999998877888999999998 8 8998887531 2 2689999966 4554322 1 13
Q ss_pred HHHHHHh-CCCCcee--ehhHHHHHHHhC--CeeccccccccccceeEEEcc-----cccccccccCCC-CceEEeeccc
Q 037843 82 FRTVLEL-GPTMPLF--CMGLKCIGEALE--GRLYVLLLVSCMGKALVYYNE-----KEEADGLLAGLS-NPFTAGRYHG 150 (203)
Q Consensus 82 ~~~i~~~-~~~~Pil--ClG~Qlla~a~g--g~v~~~~~~~~~g~~~i~~~~-----~~~~~~lf~~~~-~~~~~~~~H~ 150 (203)
.++|+++ +.++||| |+|||+|+.++| |+...+ +...|. +.... ....++++...+ ..+.++++|+
T Consensus 67 ~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l--~~~~g~--v~~~~~~~~~~~g~~~l~~~~~~~~~~v~~~H~ 142 (201)
T 1gpw_B 67 IDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGL--SLIEGN--VVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHT 142 (201)
T ss_dssp HHHHHHHHHTTCEEEEETHHHHTTSSEETTEEEEECC--CSSSEE--EEECCCSSCSEEEEEEEEESSSSCCEEEEEEES
T ss_pred HHHHHHHHHcCCeEEEEChhHHHHHHhhccCCCCCCc--ceeeeE--EEEcCCCCCCcccceeeEeccCCCCCeEEEECc
Confidence 4566663 6789999 999999999997 331111 111111 11110 000034444444 5688999999
Q ss_pred ceeecCCCCCCCeEEEEEcCC-C-cEEEEEeCCCCcEEEEcCCCCCC
Q 037843 151 LVIEKDSFRSDELEVTAWTED-G-LIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 151 ~~v~~~~l~~~~~~~~a~s~~-~-~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+.|.+ + +++++|++++ + .++++++++ + ++|+|||||++
T Consensus 143 ~~v~~---~--~~~vla~s~~~g~~~~a~~~~~-~-i~gvQfHPE~~ 182 (201)
T 1gpw_B 143 YRAVC---E--EEHVLGTTEYDGEIFPSAVRKG-R-ILGFQFHPEKS 182 (201)
T ss_dssp EEEEE---C--GGGEEEEEEETTEEEEEEEEET-T-EEEESSCGGGS
T ss_pred ceecc---C--CCEEEEEEccCCceEEEEEECC-C-EEEEECCCccc
Confidence 99986 4 7899999865 5 799999876 5 99999999998
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-25 Score=192.81 Aligned_cols=176 Identities=19% Similarity=0.140 Sum_probs=112.5
Q ss_pred EEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH-HHh--ccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCC
Q 037843 17 VIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA-ELK--RKKPRGVVISPGPGAPQESGISFRTVLE-LGPTM 92 (203)
Q Consensus 17 iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-~l~--~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~ 92 (203)
++|++.++..+|.++.... |+.+.+++.+..+.. ++. ..++|||||+||+|++...+ ..++++. +++++
T Consensus 301 l~D~y~Si~~aL~~~G~~~------~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g-~~~~i~~a~~~~~ 373 (545)
T 1s1m_A 301 LPDAYKSVIEALKHGGLKN------RVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEG-MITTARFARENNI 373 (545)
T ss_dssp SGGGGHHHHHHHHHHHHHH------TEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHH-HHHHHHHHHHTTC
T ss_pred EEEHHHHHHHHHHHhCccc------CCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCccchh-hHHHHHHHHHCCC
Confidence 3466666555555554444 667777665421111 110 12689999999999886543 3355555 35789
Q ss_pred cee--ehhHHHHHHHhCCeecccccc--cccc---ceeEEE-c----------c-------------------ccccccc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLV--SCMG---KALVYY-N----------E-------------------KEEADGL 135 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~--~~~g---~~~i~~-~----------~-------------------~~~~~~l 135 (203)
|+| |+|||+|+.++||++.++... .+.+ .+++.. . . ...++++
T Consensus 374 PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~ 453 (545)
T 1s1m_A 374 PYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSL 453 (545)
T ss_dssp CEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCH
T ss_pred cEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCH
Confidence 999 999999999999999865421 1111 122211 1 0 0001233
Q ss_pred ccCCCCceE--EeecccceeecC---CCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 136 LAGLSNPFT--AGRYHGLVIEKD---SFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 136 f~~~~~~~~--~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+..++.... ..+.|+|.|+.. .+.+++++++|++.++ .+++++++++|+++|+|||||+..++.
T Consensus 454 l~~iyg~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~ 523 (545)
T 1s1m_A 454 VRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPR 523 (545)
T ss_dssp HHHHTTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTT
T ss_pred HHHhcCCceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence 333333333 356788888642 2224799999999887 899999999996669999999998875
|
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=188.59 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=115.4
Q ss_pred CCcEEEE-------eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH--------HHHhccCCCEEEECCCCCCCC
Q 037843 12 KNPIVVI-------DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV--------AELKRKKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~ii-------d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~--------~~l~~~~~dgiil~GG~~~~~ 76 (203)
..+|+++ |+|.|+..+|..+..+. ++.+.+...+..+. +++. ++||||++||+|.+.
T Consensus 293 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~------~~~V~I~wIds~~l~~~~~~~~~~L~--~~DgIIlpGG~G~~~ 364 (535)
T 3nva_A 293 TINIALVGKYTKLKDSYISIKEAIYHASAYI------GVRPKLIWIESTDLESDTKNLNEILG--NVNGIIVLPGFGSRG 364 (535)
T ss_dssp EEEEEEEESCTTSGGGGHHHHHHHHHHHHHT------TCEEEEEEEEGGGGCCSSSCCTTTTT--SCSEEEECCCCSSTT
T ss_pred eeEEEEEecCcCCchhHHHHHHHHHHHHHHc------CCCeEEEEecchhccccccchhhhcc--CCCEEEECCCCCCcc
Confidence 3568888 44445555555555555 67776654332211 2222 689999999998875
Q ss_pred CcchHHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccc--ccc---------------------------ccceeE
Q 037843 77 ESGISFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLL--VSC---------------------------MGKALV 124 (203)
Q Consensus 77 ~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~~---------------------------~g~~~i 124 (203)
..+. .++++. .++++|+| |+|||+|+.++||++..... ..+ .|.+++
T Consensus 365 ~~g~-i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v 443 (535)
T 3nva_A 365 AEGK-IKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKI 443 (535)
T ss_dssp HHHH-HHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEE
T ss_pred HHHH-HHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEE
Confidence 4433 455555 45789999 99999999999999953221 000 122334
Q ss_pred EEcccccccccccCCCC--ceEEeecccceeecC---CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 125 YYNEKEEADGLLAGLSN--PFTAGRYHGLVIEKD---SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 125 ~~~~~~~~~~lf~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
.+.. ++++..+.. .+...++|+|.|+.. .+.++++.++|+++++.++|++++++||++|+|||||+..++.
T Consensus 444 ~l~~----gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~ 519 (535)
T 3nva_A 444 ILKE----GTIAYQLYGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPT 519 (535)
T ss_dssp EECT----TSHHHHHHTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSS
T ss_pred EEcC----CCcHHHHhCCCeeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCC
Confidence 4432 233333222 234456788888641 2335799999999999999999999998899999999988764
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=171.11 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=113.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~ 87 (203)
+++|+|+++.++|..+ .++|++. |+.+.+++.. +++. ++|+|||+||++...+. ....++|++
T Consensus 23 ~~~I~il~~~~~~~~~-~~~l~~~------G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~ 89 (219)
T 1q7r_A 23 NMKIGVLGLQGAVREH-VRAIEAC------GAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQ 89 (219)
T ss_dssp CCEEEEESCGGGCHHH-HHHHHHT------TCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHH
T ss_pred CCEEEEEeCCCCcHHH-HHHHHHC------CCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHH
Confidence 4689999987767654 4778887 9998887642 2343 68999999998654321 122466666
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEccc--c------cccccccCCCCceEEeecccceeecC
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK--E------EADGLLAGLSNPFTAGRYHGLVIEKD 156 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~------~~~~lf~~~~~~~~~~~~H~~~v~~~ 156 (203)
.++++||| |+|||+|+.++|+++.+. .|..++..... + ..+..+.+++.++.++++|++.|..
T Consensus 90 ~~~~~~PilGIC~G~QlL~~~~gg~~~~~-----lg~~~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v~~- 163 (219)
T 1q7r_A 90 FAAAGKPMFGTCAGLILLAKRIVGYDEPH-----LGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVE- 163 (219)
T ss_dssp HHHTTCCEEEETTHHHHHEEEEESSCCCC-----CCCEEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEE-
T ss_pred HHHcCCeEEEECHHHHHHHHHhCCCCcCC-----cCccceEEEecCCCccccceecCcccCCCCCceEEEEEecceeec-
Confidence 36789999 999999999999977432 22212111100 0 0022345565578888999999976
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 157 SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 157 ~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++++++++|++ ++.+++++.. +++|+|||||++.
T Consensus 164 --l~~~~~v~a~s-dg~~ea~~~~---~i~GvQfHPE~~~ 197 (219)
T 1q7r_A 164 --AGDGVDVLATY-NDRIVAARQG---QFLGCSFHPELTD 197 (219)
T ss_dssp --ECTTCEEEEEE-TTEEEEEEET---TEEEESSCGGGSS
T ss_pred --cCCCcEEEEEc-CCEEEEEEEC---CEEEEEECcccCC
Confidence 56899999998 6789999984 4999999999975
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=164.37 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=108.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVL 86 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~ 86 (203)
.+++|+|||+ .++...+.++|++. |+.+.+++.. +++. ++|+|||+||....++. ..+.++|+
T Consensus 19 ~~~~I~ii~~-~~~~~~~~~~l~~~------g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~ 85 (208)
T 2iss_D 19 SHMKIGVLGV-QGDVREHVEALHKL------GVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLV 85 (208)
T ss_dssp -CCEEEEECS-SSCHHHHHHHHHHT------TCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHH
T ss_pred CCcEEEEEEC-CCchHHHHHHHHHC------CCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHH
Confidence 3578999997 33444466778777 9988887542 3444 58999999985332221 11346666
Q ss_pred Hh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccc--------cccccccCCC-CceEEeecccceee
Q 037843 87 EL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE--------EADGLLAGLS-NPFTAGRYHGLVIE 154 (203)
Q Consensus 87 ~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~--------~~~~lf~~~~-~~~~~~~~H~~~v~ 154 (203)
++ ++++||| |+|||+|+.++|+...+. .|..+....... ..+..+.+++ +++.++++|++.+.
T Consensus 86 ~~~~~g~PilGIC~G~QlL~~~~gg~~~~~-----lg~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 160 (208)
T 2iss_D 86 ERINNGLPVFATCAGVILLAKRIKNYSQEK-----LGVLDITVERNAYGRQVESFETFVEIPAVGKDPFRAIFIRAPRIV 160 (208)
T ss_dssp HHHHTTCCEEEETHHHHHHEEEEC---CCC-----CCCEEEEEETTTTCSGGGCEEEEECCGGGCSSCEEEEESSCCEEE
T ss_pred HHHHCCCeEEEECHHHHHHHHHcCCCCCCC-----ccccceEEEecCCCcccccccCCcccccCCCCceEEEEEeCcccc
Confidence 63 6789999 999999999999954221 222222211110 0123455665 57889999999987
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. ++++++++|++ ++.+++++.. + ++|+|||||++..
T Consensus 161 ~---~~~~~~v~a~~-d~~~~a~~~~--~-i~GvQfHPE~~~~ 196 (208)
T 2iss_D 161 E---TGKNVEILATY-DYDPVLVKEG--N-ILACTFHPELTDD 196 (208)
T ss_dssp E---ECSSCEEEEEE-TTEEEEEEET--T-EEEESSCGGGSSC
T ss_pred c---CCCCcEEEEEE-CCEEEEEEEC--C-EEEEEeCCCcCCc
Confidence 6 56899999998 5889999874 3 9999999999764
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-24 Score=163.23 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=108.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC-CC---cchHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP-QE---SGISFRTVL 86 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~---~~~~~~~i~ 86 (203)
|+++|.|+...+ ....+.+++++. |+.+.++++. +++. ++|||||+||+... .+ ...+.++++
T Consensus 1 ~~p~Igi~~~~~-~~~~~~~~l~~~------G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~ 67 (191)
T 2ywd_A 1 MRGVVGVLALQG-DFREHKEALKRL------GIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVR 67 (191)
T ss_dssp --CCEEEECSSS-CHHHHHHHHHTT------TCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHH
T ss_pred CCcEEEEEecCC-chHHHHHHHHHC------CCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHH
Confidence 368899997654 345678888888 9988887642 2344 58999999995321 11 122356666
Q ss_pred Hh-CCC-Ccee--ehhHHHHHHHhCC-eeccccccccccceeEEEccc--cc------ccccccCCCCceEEeeccccee
Q 037843 87 EL-GPT-MPLF--CMGLKCIGEALEG-RLYVLLLVSCMGKALVYYNEK--EE------ADGLLAGLSNPFTAGRYHGLVI 153 (203)
Q Consensus 87 ~~-~~~-~Pil--ClG~Qlla~a~gg-~v~~~~~~~~~g~~~i~~~~~--~~------~~~lf~~~~~~~~~~~~H~~~v 153 (203)
++ +++ +||| |+|||+|+.++|+ ++.+. .|..+...... +. .+..+.++ .++.++++|++.+
T Consensus 68 ~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~-----lg~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~Hs~~v 141 (191)
T 2ywd_A 68 KRVEEGSLALFGTCAGAIWLAKEIVGYPEQPR-----LGVLEAWVERNAFGRQVESFEEDLEVEGL-GSFHGVFIRAPVF 141 (191)
T ss_dssp HHHHTTCCEEEEETHHHHHHEEEETTCTTCCC-----CCCEEEEEETTCSCCSSSEEEEEEEETTT-EEEEEEEESCCEE
T ss_pred HHHHCCCCeEEEECHHHHHHHHHhCCCCCCcc-----ccccceEEEcCCcCCccccccccccccCC-CceeEEEEcccce
Confidence 63 567 9999 9999999999998 54322 12211111100 00 02234445 5678889999998
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.. ++++++++|++ ++.++++++++ ++|+|||||.+.
T Consensus 142 ~~---l~~~~~~~a~~-~~~~~a~~~~~---~~gvQfHPE~~~ 177 (191)
T 2ywd_A 142 RR---LGEGVEVLARL-GDLPVLVRQGK---VLASSFHPELTE 177 (191)
T ss_dssp EE---ECTTCEEEEEE-TTEEEEEEETT---EEEESSCGGGSS
T ss_pred ec---cCCCcEEEEEE-CCEEEEEEECC---EEEEEeCCCCCC
Confidence 75 56899999999 58899999863 999999999764
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=162.66 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=118.0
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc-c--------------cHHHHhccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE-L--------------TVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~--------------~~~~l~~~~~dgiil~GG~~ 73 (203)
.+||+||+.-... ..++.+.|... ...++++.+.... . +.+++...+|||+||+|||.
T Consensus 35 plkI~ILnlmp~k~~te~qf~rlL~~~----~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~ 110 (301)
T 2vdj_A 35 ALKIAILNLMPTKQETEAQLLRLIGNT----PLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPV 110 (301)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHTCS----SSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTT
T ss_pred CceEEEEeCCCCcCchHHHHHHHhcCC----CCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCC
Confidence 3689999875432 33455555443 1123444443321 1 35555445799999999997
Q ss_pred CCCCc---ch---HHHHHHHh-CCCCcee--ehhHHHHHHHhCC-eeccccccccccceeEEEcccccccccccCCCCce
Q 037843 74 APQES---GI---SFRTVLEL-GPTMPLF--CMGLKCIGEALEG-RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF 143 (203)
Q Consensus 74 ~~~~~---~~---~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg-~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~ 143 (203)
...+. .. +.++++.. .+.+|+| |+|+|+++.++|| .....+ ..+.|..++..+. ..++||+++++.|
T Consensus 111 ~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-~K~~Gv~~~~~~~--~~~pL~~g~~~~f 187 (301)
T 2vdj_A 111 ETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK-EKMFGVFEHEVRE--QHVKLLQGFDELF 187 (301)
T ss_dssp TTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEEEEEEEECC--SSCGGGTTCCSEE
T ss_pred cCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC-CCEEEEEEEEecC--CCCccccCCCCce
Confidence 65432 22 23444443 5779999 9999997776666 333433 5677877766643 4588999999888
Q ss_pred EEeec-----ccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 144 TAGRY-----HGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 144 ~~~~~-----H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.+.++ |.+.|.. + ++++++|.|+.+.++++..++.+ ++++|||||++..
T Consensus 188 ~~phsr~~~~~~~~v~~---~-pga~vLA~S~~~~~~~~~~~~~~-~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 188 FAVHSRHTEVRESDIRE---V-KELTLLANSEEAGVHLVIGQEGR-QVFALGHSEYSCD 241 (301)
T ss_dssp EEEEEEEEECCHHHHHT---C-TTEEEEEEETTTEEEEEEEGGGT-EEEECSCTTCCTT
T ss_pred EeeeEeccCcCHHHccC---C-CCCEEEEeCCCCcceEEEecCCC-EEEEECCCCCCHH
Confidence 88876 4455654 4 49999999999999999996655 9999999999764
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-24 Score=188.21 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=118.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTV 85 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i 85 (203)
|++|+|||+++++..++.++++++ |+.+.+++..+ . ..+. ++|||||+|| |++.... ...+++
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~~------G~~~~vv~~~~-~-~~l~--~~DglILpGg-G~~~~~~~~l~~~~~~~~i 72 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEHL------GYEVQLVKSPK-D-FNIS--GTSRLILPGV-GNYGHFVDNLFNRGFEKPI 72 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHHT------TCEEEEESSGG-G-CCST--TCSCEEEEEC-SCHHHHHHHHHHTTCHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHC------CCEEEEECCcc-c-cccc--cCCEEEECCC-CchHhHhhhhhhccHHHHH
Confidence 578999999878888999999998 99988876421 1 1133 6899999663 4433211 134556
Q ss_pred HH-hCCCCcee--ehhHHHHHHHh------------CCeeccccc----cccccceeEEEcccccccccccCCCCceEEe
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEAL------------EGRLYVLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a~------------gg~v~~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
++ +..++|+| |+|||+|+.++ |+++.+... .+++|++.+... +++|+++++.+.++
T Consensus 73 ~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~-----~~L~~~l~~~~~~~ 147 (555)
T 1jvn_A 73 REYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPS-----ENLFFGLDPYKRYY 147 (555)
T ss_dssp HHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCC-----TTCCTTCCTTSCEE
T ss_pred HHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEc-----CHHHhhCCCCceEE
Confidence 65 36789999 99999999998 677765431 134566555432 67999998777788
Q ss_pred ecccceeecCC----CCCCCeEEEEEcC---CCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 147 RYHGLVIEKDS----FRSDELEVTAWTE---DGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 147 ~~H~~~v~~~~----l~~~~~~~~a~s~---~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++|++++.... ++++++.++|+++ ++.+++++.. ++||+|||||.+.
T Consensus 148 ~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~~---~i~GvQFHPE~s~ 201 (555)
T 1jvn_A 148 FVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN---NIFATQFHPEKSG 201 (555)
T ss_dssp EEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEET---TEEEESSBGGGSH
T ss_pred EEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEeC---CEEEEEeCcEecC
Confidence 89999885411 0135688888886 3578999853 4999999999763
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=161.95 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=117.4
Q ss_pred CCcEEEEeCCch---HHHHHHHHHHHhhhhhcCCceEE--EEeCCc-c--------------cHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDS---FTYNLCQYMGELELELSQGYHFE--VYRNDE-L--------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~---~~~~l~~~l~~~~~~~~~g~~~~--v~~~~~-~--------------~~~~l~~~~~dgiil~GG 71 (203)
.+||+||+.-.. +..++.+.|... +..++ .+.... . +.+++...+|||+||+||
T Consensus 47 plkI~ILnlmp~k~~te~qf~rlL~~~------~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGs 120 (312)
T 2h2w_A 47 PLEILILNLMPDKIKTEIQLLRLLGNT------PLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGA 120 (312)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHSS------SSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCC
T ss_pred CceEEEEeCCCCcCchHHHHHHHhcCC------CCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCC
Confidence 368999986543 334566666554 44444 443321 1 233333347999999999
Q ss_pred CCCCCCc---chH---HHHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCc
Q 037843 72 PGAPQES---GIS---FRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 72 ~~~~~~~---~~~---~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
|....+. ..+ .++++.. .+.+|+| |+|+|+++.++||.......+.+.|..++..+. .++|++++++.
T Consensus 121 P~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~---~~pL~~g~~~~ 197 (312)
T 2h2w_A 121 PVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAK---DSVLFRGHDDF 197 (312)
T ss_dssp SCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESS---CCGGGTTCCSE
T ss_pred CCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcC---CCccccCCCCc
Confidence 9765432 222 3444443 5779999 999999777776643333225677887777664 48899999998
Q ss_pred eEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
|.+.++|...+..+.+ .+++++++|.|+.+.++++..++.+ ++++|||||++..
T Consensus 198 f~vphsr~~e~~~~~v~~~pga~vLA~S~~~~~q~~~~~~~~-~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 198 FWAPHSRYTEVKKEDIDKVPELEILAESDEAGVYVVANKSER-QIFVTGHPEYDRY 252 (312)
T ss_dssp EEEEEEEEEECCHHHHTTCC-CEEEEEETTTEEEEEECSSSS-EEEECSCTTCCTT
T ss_pred eEeeEEeccccCHHHccCCCCCEEEEcCCCCcceEEEecCCC-EEEEECCCCCCHH
Confidence 9888875433322111 1259999999999999999986655 9999999999764
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=148.38 Aligned_cols=169 Identities=19% Similarity=0.193 Sum_probs=108.4
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC---c---chHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE---S---GISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~---~---~~~~~~i~ 86 (203)
++|+|+++.+.|.. ..++|+.+ ...|+.+.+++. .+++. ++|||||+||+.+..+ . ..+.+.|+
T Consensus 4 ~~I~Il~~~~~~~~-~~~~l~~~---~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~ 73 (227)
T 2abw_A 4 ITIGVLSLQGDFEP-HINHFIKL---QIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALV 73 (227)
T ss_dssp EEEEEECTTSCCHH-HHHHHHTT---CCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHH
T ss_pred cEEEEEeCCCCcHH-HHHHHHHh---ccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHH
Confidence 67899988755543 34455443 012666666542 35565 5899999999754321 1 12355666
Q ss_pred H-hCC-CCcee--ehhHHHHHHHhCCeecccc--ccccccceeEEEcccc--c------ccccccCC----CCceEEeec
Q 037843 87 E-LGP-TMPLF--CMGLKCIGEALEGRLYVLL--LVSCMGKALVYYNEKE--E------ADGLLAGL----SNPFTAGRY 148 (203)
Q Consensus 87 ~-~~~-~~Pil--ClG~Qlla~a~gg~v~~~~--~~~~~g~~~i~~~~~~--~------~~~lf~~~----~~~~~~~~~ 148 (203)
+ ++. ++||| |+|||+|+.++|+.+.... .....|..++...... . ....+.++ ...+..++.
T Consensus 74 ~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 153 (227)
T 2abw_A 74 HFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACI 153 (227)
T ss_dssp HHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEE
T ss_pred HHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCceeEEEE
Confidence 6 466 89999 9999999999999863310 0123444333322110 0 01123333 356777888
Q ss_pred ccceeecCCCC-CCCeEEEEEcC-----CCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 149 HGLVIEKDSFR-SDELEVTAWTE-----DGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 149 H~~~v~~~~l~-~~~~~~~a~s~-----~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
|++.|.. + +++++++|+++ ++.+++++.. +++|+|||||.+..
T Consensus 154 h~~~v~~---~~~~~~~vla~~~~~~~g~~~~~a~~~~---~v~gvQfHPE~~~~ 202 (227)
T 2abw_A 154 RAPYIRE---ILSDEVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPELLPH 202 (227)
T ss_dssp SCCEEEE---ECCTTCEEEEEEEETTTEEEEEEEEEET---TEEEESSCGGGSSC
T ss_pred EcceEee---cCCCCcEEEEEcccccCCCCceEEEEEC---CEEEEEECCeeCCC
Confidence 9998875 4 68999999985 5778899874 49999999998754
|
| >3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.1e-10 Score=106.99 Aligned_cols=179 Identities=14% Similarity=0.142 Sum_probs=108.7
Q ss_pred CCCcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCc--ccHHHHhccCCCEEEECCCCCCCC--Ccch-----
Q 037843 11 DKNPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDE--LTVAELKRKKPRGVVISPGPGAPQ--ESGI----- 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~--~~~~~l~~~~~dgiil~GG~~~~~--~~~~----- 80 (203)
.++||+||++..++. ..+.++|+.+ |..+.+++..+ ...+++. ++|+|||+||..... ..+.
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~a------G~~~~~v~~~dl~~~~~~l~--~~d~lvlPGGfSygD~l~~g~~~a~~ 1117 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHRA------GFDAIDVHMSDLLGGRIGLG--NFHALVACGGFSYGDVLGAGEGWAKS 1117 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHHT------TCEEEEEEHHHHHTTSCCGG--GCSEEEECCSCGGGGTTSTTHHHHHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHHh------CCceEEEeecccccCcccHh--hCCEEEECCCCcchhhhccchhHHHH
Confidence 478999999977774 7889999998 99887765311 0112333 589999999853211 1111
Q ss_pred ------HHHHHHH-h-CCCCcee--ehhHHHHHHH---hCCe-----eccccccc-cccceeEEEcccccccccccCCC-
Q 037843 81 ------SFRTVLE-L-GPTMPLF--CMGLKCIGEA---LEGR-----LYVLLLVS-CMGKALVYYNEKEEADGLLAGLS- 140 (203)
Q Consensus 81 ------~~~~i~~-~-~~~~Pil--ClG~Qlla~a---~gg~-----v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~- 140 (203)
+.+.+++ + .+++|+| |.|||+|+++ +.|. +.++.... +--+..+++. ..++++++++.
T Consensus 1118 ~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~--~~~s~~~~~~~g 1195 (1303)
T 3ugj_A 1118 ILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVT--QSPSLLLQGMVG 1195 (1303)
T ss_dssp HHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEEC--CCSCGGGTTCTT
T ss_pred HHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEEC--CCCChhhhccCC
Confidence 2344555 3 5789999 9999999986 2232 33332111 1112334443 23467888875
Q ss_pred CceEEeeccccee---ec-C---CCCCCCeEEEEEc-------------CCC---cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 NPFTAGRYHGLVI---EK-D---SFRSDELEVTAWT-------------EDG---LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 ~~~~~~~~H~~~v---~~-~---~l~~~~~~~~a~s-------------~~~---~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
..+.+.-.|++.= .. + .|...+..++-+. .++ .|+++...+.+ ++|...||||...
T Consensus 1196 ~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Gr-vlg~MpHPEr~~~ 1274 (1303)
T 3ugj_A 1196 SQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGR-VTIMMPHPERVFR 1274 (1303)
T ss_dssp CEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSS-EEEESSBGGGSSB
T ss_pred CEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCC-EEEEcCChHHccc
Confidence 3466666776432 11 1 1112333333332 222 48999999987 9999999999876
Q ss_pred CCC
Q 037843 198 SEG 200 (203)
Q Consensus 198 ~~g 200 (203)
.+.
T Consensus 1275 ~~~ 1277 (1303)
T 3ugj_A 1275 TVA 1277 (1303)
T ss_dssp GGG
T ss_pred ccc
Confidence 553
|
| >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-07 Score=75.01 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=59.9
Q ss_pred CCcEEEEeCCc------hHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------c
Q 037843 12 KNPIVVIDNYD------SFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------G 79 (203)
Q Consensus 12 ~~~i~iid~~~------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~ 79 (203)
.++|+||++.. .+..++.++|+.+ |+++.+++......+++. +.|+|+++|| +.... .
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~l------G~~~~~v~~~~d~~~~l~--~ad~I~lpGG--~~~~~~~~l~~~ 100 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPL------GVNVTGIHRVADPLAAIE--KAEIIIVGGG--NTFQLLKESRER 100 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGG------TCEEEETTSSSCHHHHHH--HCSEEEECCS--CHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHC------CCEEEEEeccccHHHHHh--cCCEEEECCC--cHHHHHHHHHHC
Confidence 58999999875 6777788889888 998877643211236676 4699999885 32221 1
Q ss_pred hHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 80 ISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 80 ~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
.+.+.|++ +.+++|++ |.|||+++...
T Consensus 101 gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 101 GLLAPMADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp TCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred ChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence 13455665 45779999 99999998743
|
| >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-07 Score=71.67 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=58.8
Q ss_pred CCcEEEEeCCch------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccH----HHHhccCCCEEEECCCCCCCCCcc--
Q 037843 12 KNPIVVIDNYDS------FTYNLCQYMGELELELSQGYHFEVYRNDELTV----AELKRKKPRGVVISPGPGAPQESG-- 79 (203)
Q Consensus 12 ~~~i~iid~~~~------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~----~~l~~~~~dgiil~GG~~~~~~~~-- 79 (203)
.++|++|++.++ +..++.++|+.+ |+++.+++....+. +.+. +.|+|+++|| +.....
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~l------G~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG--~~~~l~~~ 96 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESL------GLLVEELDIATESLGEITTKLR--KNDFIYVTGG--NTFFLLQE 96 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHT------TCEEEECCTTTSCHHHHHHHHH--HSSEEEECCS--CHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHc------CCeEEEEEecCCChHHHHHHHH--hCCEEEECCC--CHHHHHHH
Confidence 589999987664 677888999999 99988875322333 3454 4699999775 322211
Q ss_pred ----hHHHHHHH-hCCCCcee--ehhHHHHHH
Q 037843 80 ----ISFRTVLE-LGPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 80 ----~~~~~i~~-~~~~~Pil--ClG~Qlla~ 104 (203)
.+.+.|++ +.+++|++ |.|+|+++.
T Consensus 97 L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 97 LKRTGADKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp HHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred HHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 13455666 46789999 999999975
|
| >4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.5e-05 Score=60.47 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=59.0
Q ss_pred cCCCCCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEEC
Q 037843 8 SKNDKNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVIS 69 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~ 69 (203)
|.+++++|+||-. ++| .-...+.|++. |++++++.... .+.+++...+||+|||+
T Consensus 4 m~~t~~~v~il~~-~gFe~~E~~~p~~~l~~a------g~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiP 76 (177)
T 4hcj_A 4 MGKTNNILYVMSG-QNFQDEEYFESKKIFESA------GYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFV 76 (177)
T ss_dssp -CCCCEEEEECCS-EEECHHHHHHHHHHHHHT------TCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEEC
T ss_pred cccCCCEEEEECC-CCccHHHHHHHHHHHHHC------CCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEEC
Confidence 5565566666622 233 22344677887 88887764321 13444444478999999
Q ss_pred CCCCCCC--CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 70 PGPGAPQ--ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 70 GG~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
||.+... +...+.++++++ .+++||. |-|-++|+.+
T Consensus 77 GG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 77 GGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp CSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred CCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 9986432 234467788874 6789998 9999999875
|
| >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.9e-05 Score=59.39 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=57.4
Q ss_pred CCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCcc----------------cHHHHhccCCCEEEECCC
Q 037843 11 DKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDEL----------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~~----------------~~~~l~~~~~dgiil~GG 71 (203)
++++|+|+-+.... .....+.|+.. |+++.++..... +.+++...++|+||++||
T Consensus 22 ~~~kV~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSEFTSPADEFRKA------GHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp CCCEEEEECCTTBCTHHHHHHHHHHHHT------TCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred cCCEEEEEECCCCCHHHHHHHHHHHHHC------CCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 45789888653211 23456778777 888887754311 112222126899999999
Q ss_pred CCCC--CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 72 PGAP--QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~--~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+.. .....+.+++++. .+++||. |.|.|+|+.+
T Consensus 96 ~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 96 HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp THHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred cCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 5421 1223456778774 6789999 9999999986
|
| >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=57.73 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCCEEEECCCCCC---CCC----------cchHHHHHHHh-CCCCcee--ehhHHHHHHHhC
Q 037843 62 KPRGVVISPGPGA---PQE----------SGISFRTVLEL-GPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 62 ~~dgiil~GG~~~---~~~----------~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~g 107 (203)
+||+|||+||.+. ..+ ...+.++++++ .+++||. |-|-++|+.++.
T Consensus 90 ~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 90 ELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp GCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred cCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 6899999999764 222 33457778874 6789999 999999999865
|
| >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00022 Score=54.47 Aligned_cols=88 Identities=18% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc---------------ccHHHH-hccCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE---------------LTVAEL-KRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~---------------~~~~~l-~~~~~dgiil~GG~ 72 (203)
+++|+|+-+.... .....+.|+.. |+++.++.... .+.+++ ...++|.||++||.
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~ 76 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRA------GIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHT------TCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHC------CCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCc
Confidence 4678777543211 22355677777 88887765321 134555 33478999999997
Q ss_pred CCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 73 GAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+.+. ....+.+++++. .+++||. |-|-++|+.+
T Consensus 77 ~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 77 LGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 4332 223456778774 6789999 9999999986
|
| >3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00013 Score=54.11 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~ 74 (203)
.++|+|+-+.... .....+.|+.. |+++.++..+. .+.+++...++|.||++||.+.
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~ 75 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEE------GHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP 75 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHT------TCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHC------CCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH
Confidence 3578777443211 22355677776 88887765431 1123333235899999999753
Q ss_pred C--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 75 P--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
. .....+.+++++ ..+++||. |-|.++|+.+
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 76 EIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 1 123345677877 46889999 9999999985
|
| >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00011 Score=56.57 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=57.5
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc-----------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE-----------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~-----------------~~~~~l~~~~~dgiil~GG 71 (203)
+++|+|+-+.... .....+.|+.. |+++.++..+. .+.+++...+||+||++||
T Consensus 2 ~~kV~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG 75 (205)
T 2ab0_A 2 SASALVCLAPGSEETEAVTTIDLLVRG------GIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG 75 (205)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHT------TCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCC
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHHC------CCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCC
Confidence 4678877543221 22345677777 88887764321 1345554347899999999
Q ss_pred CCCCCC---cchHHHHHHH-hCCCCcee--ehhH-HHHHHH
Q 037843 72 PGAPQE---SGISFRTVLE-LGPTMPLF--CMGL-KCIGEA 105 (203)
Q Consensus 72 ~~~~~~---~~~~~~~i~~-~~~~~Pil--ClG~-Qlla~a 105 (203)
.+.+.+ ...+.+++++ ..+++||. |-|- ++|+.+
T Consensus 76 ~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 76 IKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred cccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 654332 2345677877 46789999 9999 999874
|
| >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00021 Score=56.75 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=34.4
Q ss_pred CCCEEEECCCCCCC--------------CCcchHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPGPGAP--------------QESGISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG~~~~--------------~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
+||+|||+||.+.. .....+.++++++ .+++||. |-|-++|+.+-
T Consensus 107 ~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 107 EFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp GCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred cCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 68999999997531 1123467778774 6789999 99999999875
|
| >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00032 Score=54.55 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCEEEECCCCCCC---CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP---QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~---~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|||+||.+.. .....+.++++++ .+++||. |-|-++|+.+
T Consensus 89 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 89 GFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp SCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 68999999998753 2334567788874 6789998 9999999875
|
| >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=56.56 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=56.6
Q ss_pred ccCCCCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc---------------ccHHHHhccCCCEEEE
Q 037843 7 LSKNDKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE---------------LTVAELKRKKPRGVVI 68 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~---------------~~~~~l~~~~~dgiil 68 (203)
++++|+++|+|+-..... .....+.|+.. |+++.++..+. .+.+++...+||.|||
T Consensus 4 ~~~~m~~~v~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~liv 77 (208)
T 3ot1_A 4 MEQGMSKRILVPVAHGSEEMETVIIVDTLVRA------GFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALAL 77 (208)
T ss_dssp -----CCEEEEEECTTCCHHHHHHHHHHHHHT------TCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEE
T ss_pred cccccCCeEEEEECCCCcHHHHHHHHHHHHHC------CCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEE
Confidence 456677889888543211 22355677777 88887765431 1123332236899999
Q ss_pred CCCCCCCC---CcchHHHHHHH-hCCCCcee--ehhH-HHHHHH
Q 037843 69 SPGPGAPQ---ESGISFRTVLE-LGPTMPLF--CMGL-KCIGEA 105 (203)
Q Consensus 69 ~GG~~~~~---~~~~~~~~i~~-~~~~~Pil--ClG~-Qlla~a 105 (203)
+||.+.+. ....+.+++++ ..+++||. |-|- .+|+.+
T Consensus 78 pGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 78 PGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred CCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 99964322 33456778887 46789998 9998 888864
|
| >4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00039 Score=52.77 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=56.8
Q ss_pred CCCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc---------------ccHHHHhccCCCEEEECCC
Q 037843 11 DKNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE---------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~---------------~~~~~l~~~~~dgiil~GG 71 (203)
|+++|+|+-. ++|. ....+.|+.. |+++.++..+. .+.+++...+||.||++||
T Consensus 4 m~kkv~ill~-~g~~~~e~~~~~~~l~~a------g~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG 76 (190)
T 4e08_A 4 MSKSALVILA-PGAEEMEFIIAADVLRRA------GIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGG 76 (190)
T ss_dssp CCCEEEEEEC-TTCCHHHHHHHHHHHHHT------TCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCC
T ss_pred CCcEEEEEEC-CCchHHHHHHHHHHHHHC------CCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCC
Confidence 4567877754 2332 2345677777 88888775432 1134443336899999998
Q ss_pred CCCCC---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 72 PGAPQ---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+... ....+.+++++ ..+++||. |-|-++|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 77 LGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 43221 23345677777 46789998 9999999985
|
| >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00068 Score=51.26 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc-------------------ccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE-------------------LTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~-------------------~~~~~l~~~~~dgiil 68 (203)
+++|+|+-+ ++|. ....+.|+.. |+++.++..+. .+.+++...+||+||+
T Consensus 9 ~~~v~il~~-~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liv 81 (190)
T 2vrn_A 9 GKKIAILAA-DGVEEIELTSPRAAIEAA------GGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLL 81 (190)
T ss_dssp TCEEEEECC-TTCBHHHHHHHHHHHHHT------TCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEE
T ss_pred CCEEEEEeC-CCCCHHHHHHHHHHHHHC------CCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEE
Confidence 367888844 3332 2345677776 77776654321 1223332236899999
Q ss_pred CCCCCCCC---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 69 SPGPGAPQ---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 69 ~GG~~~~~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+||.+.+. ....+.+++++ ..+++||. |-|.++|+.+
T Consensus 82 pGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 82 PGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp CCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred CCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 99974332 23446778887 46789999 9999999986
|
| >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0012 Score=50.77 Aligned_cols=98 Identities=14% Similarity=-0.002 Sum_probs=54.5
Q ss_pred cCCCCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCcc-------------cHHHHhccCCCEEEECCC
Q 037843 8 SKNDKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDEL-------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-------------~~~~l~~~~~dgiil~GG 71 (203)
|+.++++|+|+-+..-. .....+.|+........++++.++..+.. +.+++...++|.|||+||
T Consensus 1 ~~~~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG 80 (202)
T 3gra_A 1 MSLAPYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGG 80 (202)
T ss_dssp ----CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECC
T ss_pred CCCCcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCC
Confidence 55567788888553211 12234555544110111255555543210 122222236899999999
Q ss_pred CCCCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 72 PGAPQESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+.......+.+++++. .++++|. |-|-.+|+.+
T Consensus 81 ~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 81 LRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CchhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 76543225567888874 5678888 9999999986
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0018 Score=58.22 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=59.8
Q ss_pred CCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCC-----cccHHHHhccCCCEEEECCCCCCC-------
Q 037843 12 KNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRND-----ELTVAELKRKKPRGVVISPGPGAP------- 75 (203)
Q Consensus 12 ~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~-----~~~~~~l~~~~~dgiil~GG~~~~------- 75 (203)
+++|+||-..+.|. ..+.++|++. |+.+.++-.. +.+.++.....||+|||+||....
T Consensus 537 grKVaILvadG~fE~~El~~p~~aL~~a------Ga~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~ 610 (688)
T 3ej6_A 537 TLRVGVLSTTKGGSLDKAKALKEQLEKD------GLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAM 610 (688)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHT------TCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTC
T ss_pred CCEEEEEccCCCccHHHHHHHHHHHHHC------CCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccch
Confidence 46788884322232 3456778887 9999988542 123344444479999999996541
Q ss_pred ---CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 76 ---QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 76 ---~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
...+....++++ +.++|||- |-|-++|..+
T Consensus 611 d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 611 SPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp CTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 223456788887 57889998 9999999875
|
| >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0014 Score=48.84 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=32.5
Q ss_pred CCCEEEECCC--C-CCCC-----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPG--P-GAPQ-----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG--~-~~~~-----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++|| . +... ....+.++++++ .+++||. |-|.++|+.+
T Consensus 66 ~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 66 EFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred cCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 6899999999 5 3321 123356777774 6789999 9999999986
|
| >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0014 Score=49.58 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHH-hhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGE-LELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~-~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~ 72 (203)
|++|+|+-.. +| .......|+. . |+++.++..+. .+.+++...++|+||++||.
T Consensus 1 m~~i~ill~~-g~~~~e~~~~~~~l~~a~------~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~ 73 (188)
T 2fex_A 1 MTRIAIALAQ-DFADWEPALLAAAARSYL------GVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL 73 (188)
T ss_dssp CCEEEEECCT-TBCTTSSHHHHHHHHHHS------CCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS
T ss_pred CcEEEEEeCC-CchHHHHHHHHHHHhhcC------CceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCC
Confidence 3578777332 22 2234556666 5 77777665421 11233322268999999997
Q ss_pred CCC-CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 73 GAP-QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~-~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+.. .....+.+++++. .+++||. |-|.++|+.+
T Consensus 74 ~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 74 SWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp HHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 521 2234467778874 6789999 9999999986
|
| >3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0023 Score=49.48 Aligned_cols=94 Identities=4% Similarity=-0.082 Sum_probs=54.5
Q ss_pred CCcEEEEeCCc---hHHHHHHHHHHHhhhhh--cCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVIDNYD---SFTYNLCQYMGELELEL--SQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~---~~~~~l~~~l~~~~~~~--~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~ 72 (203)
|++|+|+-..+ .-.....+.|+...... ..++++.++..+. .+.+++...++|.||++||.
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~ 84 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGT 84 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCS
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCC
Confidence 57787774322 11234556666210000 0167776664321 12233332368999999997
Q ss_pred CCCC-CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 73 GAPQ-ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~~-~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+... ....+.+++++. .++++|. |-|-.+|+.+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 85 TWSEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 6422 223456777774 6779998 9999999986
|
| >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0036 Score=48.23 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=34.5
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++||.+.......+.+++++. .+++||. |-|-++|+.+
T Consensus 63 ~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 63 NFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred CCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 689999999986433333467788874 6789999 9999999986
|
| >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0021 Score=51.03 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=33.9
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+|+||.+... ....+.++++++ .+++||- |-|-.+|+.+
T Consensus 105 ~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 105 DYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 689999999986532 233467778774 6789998 9999999875
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0023 Score=54.03 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc------------------------------ccHH
Q 037843 10 NDKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE------------------------------LTVA 56 (203)
Q Consensus 10 ~~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~------------------------------~~~~ 56 (203)
.++++|+|+-..... .....+.|+.. |+++.++..+. .+.+
T Consensus 203 ~~~~ki~ill~dg~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 276 (396)
T 3uk7_A 203 GANKRILFLCGDYMEDYEVKVPFQSLQAL------GCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFD 276 (396)
T ss_dssp CCCCEEEEECCTTEEHHHHHHHHHHHHHH------TCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGG
T ss_pred hccceEEEEecCCCcchhHHHHHHHHHHC------CCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHH
Confidence 456788888543211 22345677777 88887764321 1223
Q ss_pred HHhccCCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 57 ELKRKKPRGVVISPGPGAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 57 ~l~~~~~dgiil~GG~~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
++...++|.||++||.+.. .....+.+++++ ..+++||. |-|-++|+.+
T Consensus 277 ~~~~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 277 DLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HCCcccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 3322368999999997522 123446777877 46789999 9999999986
|
| >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0032 Score=48.50 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCC----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|||+||.+... ....+.+++++. .++++|. |-|-.+|+.+
T Consensus 74 ~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 74 FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 689999999875322 234567788874 6778988 9999999986
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0036 Score=52.83 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc------------------------------ccHHH
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE------------------------------LTVAE 57 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~------------------------------~~~~~ 57 (203)
+++|+|+-.. +| .....+.|++. |+++.++.... .+.++
T Consensus 12 ~~kv~ill~d-g~e~~E~~~~~~~l~~a------g~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 84 (396)
T 3uk7_A 12 SRTVLILCGD-YMEDYEVMVPFQALQAF------GITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDE 84 (396)
T ss_dssp CCEEEEECCT-TEEHHHHHHHHHHHHHT------TCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGG
T ss_pred CCeEEEEeCC-CccHHHHHHHHHHHHHC------CCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhh
Confidence 4678877543 23 22345677777 88887764321 12233
Q ss_pred HhccCCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 58 LKRKKPRGVVISPGPGAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 58 l~~~~~dgiil~GG~~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+...+||.||++||.+.. .....+.+++++ ..+++||. |-|-++|+.+
T Consensus 85 ~~~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 85 VDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp CCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cCcccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 322368999999997531 123346777877 46789998 9999999986
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0055 Score=55.64 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=56.6
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~ 73 (203)
.++|+||-.. +| ...+.+.|++. |+.+.++-... .+.++.....||+|||+|| +
T Consensus 600 grKVaILlaD-GfEe~El~~pvdaLr~A------G~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g 671 (753)
T 3ttv_A 600 GRVVAILLND-EVRSADLLAILKALKAK------GVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-N 671 (753)
T ss_dssp TCEEEEECCT-TCCHHHHHHHHHHHHHH------TCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-C
T ss_pred CCEEEEEecC-CCCHHHHHHHHHHHHHC------CCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-C
Confidence 3678887332 23 23456778887 88888775421 1223333335899999999 4
Q ss_pred CC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 74 AP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 74 ~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.. .....+..++++ +.+++||- |-|-++|+.+
T Consensus 672 ~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 672 IADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 32 233456788888 47889998 9999999876
|
| >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0099 Score=46.51 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=54.1
Q ss_pred CCCCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCC
Q 037843 10 NDKNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG 71 (203)
+|+++|+|+-+. +|. ....+.|+.. .|+++.++..+. .+.+++. ++|.||++||
T Consensus 3 ~m~~~V~ill~~-gf~~~e~~~p~evl~~~-----~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~--~~D~livpGG 74 (231)
T 3noq_A 3 HMAVQIGFLLFP-EVQQLDLTGPHDVLASL-----PDVQVHLIWKEPGPVVASSGLVLQATTSFADCP--PLDVICIPGG 74 (231)
T ss_dssp -CCEEEEEECCT-TCCHHHHHHHHHHHTTS-----TTEEEEEEESSSEEEECTTSCEEEECEETTTCC--CCSEEEECCS
T ss_pred CCcEEEEEEEeC-CCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCcEEcCCCCEEecccChhHCC--cCCEEEECCC
Confidence 356788888543 332 2234555542 167776654321 1122322 5899999999
Q ss_pred CCCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 72 PGAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
++.. .....+.+++++ ..++++|. |-|-.+|+.+
T Consensus 75 ~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 75 TGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp TTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 7642 123456788887 47788988 9999999975
|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0064 Score=50.98 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCcc----------------cHHHHhccCCCEEEECC
Q 037843 11 DKNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDEL----------------TVAELKRKKPRGVVISP 70 (203)
Q Consensus 11 ~~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~----------------~~~~l~~~~~dgiil~G 70 (203)
++++|+|+-+. +| .......|+.. |+++.++..+.. +.+++...+||.|||+|
T Consensus 9 ~mkkV~ILl~d-gf~~~El~~p~dvL~~A------g~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPG 81 (365)
T 3fse_A 9 GKKKVAILIEQ-AVEDTEFIIPCNGLKQA------GFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPG 81 (365)
T ss_dssp --CEEEEECCT-TBCHHHHHHHHHHHHHT------TCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECC
T ss_pred CceEEEEEECC-CCcHHHHHHHHHHHHHC------CCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEEC
Confidence 35778888543 23 22355677776 788777643211 12222222589999999
Q ss_pred CCCCC--CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 71 GPGAP--QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 71 G~~~~--~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
|.+.. .....+.++++++ .+++||. |-|-.+|+.+
T Consensus 82 G~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 82 GMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp BTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 97531 1234467778774 6789998 9999999985
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0092 Score=53.80 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=58.5
Q ss_pred CCcEEEEeCC-chHH----HHHHHHHHHhhhhhcCCceEEEEeCCc-----ccHHHHhccCCCEEEECCCCCC-------
Q 037843 12 KNPIVVIDNY-DSFT----YNLCQYMGELELELSQGYHFEVYRNDE-----LTVAELKRKKPRGVVISPGPGA------- 74 (203)
Q Consensus 12 ~~~i~iid~~-~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~-----~~~~~l~~~~~dgiil~GG~~~------- 74 (203)
+++|+|+-.. ++|. ..+.++|++. |+.++++-... .+.++.....||+|||+||...
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~a------G~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~ 602 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSV------GVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSF 602 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGG------TCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTT
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHC------CCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccc
Confidence 3679888651 3443 2355677777 99999885421 2223333347999999999533
Q ss_pred ---------C---CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 75 ---------P---QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ---------~---~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+ ...+....++++ +..+|||- |-|-++|..+
T Consensus 603 ~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 603 TVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 2 233456778887 56789998 9999988865
|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0088 Score=47.31 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+|+||.+... ....+.++++++ .+++||- |-|-.+|+.+
T Consensus 98 ~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 98 DYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 689999999986532 234467778774 6789998 9999999876
|
| >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0063 Score=47.93 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=33.8
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|||+||.+... ....+.++++++ .+++||. |-|-.+|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 589999999977432 233467788874 6789998 9999998876
|
| >4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.019 Score=43.54 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CC-CCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GP-TMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~-~~Pil--ClG~Qlla~a 105 (203)
+||+|||+||.+.+. +...+.++++++ .+ ++++- |-|.. ++.+
T Consensus 73 ~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a 122 (194)
T 4gdh_A 73 QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT 122 (194)
T ss_dssp HCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred cCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence 589999999854322 334567888885 33 67776 98874 4443
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.017 Score=52.48 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=56.2
Q ss_pred CcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCCC
Q 037843 13 NPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 13 ~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~~ 75 (203)
++|+||-..+.. .......|+.. |+.+.++.... .+.+++....||+|||+||.+.+
T Consensus 535 rkVaILl~dGfe~~El~~p~dvL~~A------G~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~ 608 (715)
T 1sy7_A 535 RRVAIIIADGYDNVAYDAAYAAISAN------QAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAA 608 (715)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHT------TCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhc------CCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccH
Confidence 578888543211 22355667776 88888775421 11222222258999999985332
Q ss_pred C---CcchHHHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 76 Q---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 76 ~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
. ....+..++++ ..+++||- |-|-.+|+.++|
T Consensus 609 ~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 609 ETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 2 23446777877 46789998 999999999854
|
| >3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.016 Score=45.51 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=48.9
Q ss_pred ccccCCCCCcEEEEeCCchHH---HHHHHHHHHhhhhhcCC--ceEEEEeCCc--------------ccHHHHhccCCCE
Q 037843 5 LKLSKNDKNPIVVIDNYDSFT---YNLCQYMGELELELSQG--YHFEVYRNDE--------------LTVAELKRKKPRG 65 (203)
Q Consensus 5 ~~~~~~~~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g--~~~~v~~~~~--------------~~~~~l~~~~~dg 65 (203)
.++|...+++|+|+-+.+... ....+.|+.. + +++.++. +. .+.++.. ++|.
T Consensus 13 ~~~~~~~~~kV~ill~dGf~~~e~~~p~dvl~~~------~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~~--~~D~ 83 (236)
T 3bhn_A 13 ENLYFQGMYKVGIVLFDDFTDVDFFLMNDLLGRT------SDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEVK--EQDV 83 (236)
T ss_dssp -------CEEEEEECCTTBCHHHHHHHHHHHTTC------SSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGGG--GCSE
T ss_pred hhhccCCCCEEEEEeCCCChHHHHHHHHHHHHcC------CCCEEEEEEE-CCCcEEecCCcEEecCccccccc--CCCE
Confidence 456777778898885432112 2233455443 3 4555443 11 1223322 6899
Q ss_pred EEECCC-CCCCC--CcchHHHHHHHhCCCC-cee--ehhHHHHHHH
Q 037843 66 VVISPG-PGAPQ--ESGISFRTVLELGPTM-PLF--CMGLKCIGEA 105 (203)
Q Consensus 66 iil~GG-~~~~~--~~~~~~~~i~~~~~~~-Pil--ClG~Qlla~a 105 (203)
|||+|| ++... ....+.+++ ...+++ +|. |-|-.+|+.+
T Consensus 84 liVPGG~~g~~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 84 VLITSGYRGIPAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp EEECCCTTHHHHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred EEEcCCccCHhhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 999999 55321 233456677 655566 887 9999999986
|
| >3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.085 Score=41.78 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=33.7
Q ss_pred CCCEEEECCCC-CCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGP-GAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~-~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.||.|||+||. +.. .....+.+++++ ..++++|. |-|-.+|+.+
T Consensus 84 ~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 84 DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp SCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 57999999987 532 233456788887 47788988 9999999986
|
| >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.044 Score=44.38 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=34.5
Q ss_pred cCCCEEEECCCCCCCCC---cchHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 61 KKPRGVVISPGPGAPQE---SGISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~---~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
.+||+|||+||.+...+ ...+.++++++ .++++|. |-|-.+|+.+-
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 36899999999775422 23467788874 6788998 99999887763
|
| >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.25 Score=33.61 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=46.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc-CCCEEEECCCCCCCC-Ccc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK-KPRGVVISPGPGAPQ-ESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~~~-~~~-~~~~~i~~ 87 (203)
.+.+|+|+|....+...+.+.|+.. |+.+............+... .+|.||+--. .+. ..+ .+.+.+++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~--l~~~~~g~~~~~~l~~ 75 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDA------GFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR--FCQPPDGWQVARVARE 75 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTTCCCCEEEEESC--CSSSSCHHHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHHcCCCCCEEEEeee--CCCCCCHHHHHHHHHh
Confidence 3578999998877778888888887 88876543211112233343 6899888322 121 122 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 76 ~~~~~~ii 83 (132)
T 2rdm_A 76 IDPNMPIV 83 (132)
T ss_dssp HCTTCCEE
T ss_pred cCCCCCEE
Confidence 55678888
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.29 Score=33.24 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=46.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.++.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSL------GATTVLAADGVDALELLGGFTPDLMICDIA--MPRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHTTCCCSEEEECCC-------CHHHHHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC------CceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCC
Confidence 468999998877788888899888 888765432111122333346899998322 111222 24555666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 79 ~~~ii 83 (130)
T 3eod_A 79 QTPVL 83 (130)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78988
|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.22 Score=34.38 Aligned_cols=80 Identities=9% Similarity=0.200 Sum_probs=48.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH--h
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE--L 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~--~ 88 (203)
+++|+|||........+.+.|+.. |+.+..........+.+....+|.||+--. .+...+ .+.+.+++ .
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 77 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKG------GFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSR 77 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT------TCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHC------CCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcc
Confidence 578999998877778888889888 888755432111123333457899998321 122222 23455555 3
Q ss_pred CCCCcee-ehhH
Q 037843 89 GPTMPLF-CMGL 99 (203)
Q Consensus 89 ~~~~Pil-ClG~ 99 (203)
....|++ .-+.
T Consensus 78 ~~~~~ii~~s~~ 89 (140)
T 3grc_A 78 TRDLAIVVVSAN 89 (140)
T ss_dssp GTTCEEEEECTT
T ss_pred cCCCCEEEEecC
Confidence 4578998 4443
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.18 Score=35.69 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
...+.+|+|||....+...+.+.|+.. |+.+........-.+.+....+|.||+--. .+...+ .+.+.+++
T Consensus 4 ~~~~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 4 SNRAGEILIVEDSPTQAEHLKHILEET------GYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKG 75 (154)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHH
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHh
Confidence 344678999998887788888899888 888765432111122333447899998321 122222 23455665
Q ss_pred hC--CCCcee
Q 037843 88 LG--PTMPLF 95 (203)
Q Consensus 88 ~~--~~~Pil 95 (203)
.. ..+|++
T Consensus 76 ~~~~~~~pii 85 (154)
T 3gt7_A 76 QPDLRTIPVI 85 (154)
T ss_dssp STTTTTSCEE
T ss_pred CCCcCCCCEE
Confidence 42 578988
|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.19 Score=34.59 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=47.3
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+.+|+|||....+...+.+.|+.. |..+........-.+.+....+|.||+--.- +...+ .+.+.+++.
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~ 76 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNH------FPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PKLGGLEMLDRIKAG 76 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTT------CSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHT
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhc------CcEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCCCHHHHHHHHHhc
Confidence 34679999998877778888888876 8877655321111222333478999983321 22222 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 77 ~~~~~ii 83 (137)
T 3hdg_A 77 GAKPYVI 83 (137)
T ss_dssp TCCCEEE
T ss_pred CCCCcEE
Confidence 5678888
|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.2 Score=34.59 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=46.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH-
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE- 87 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~- 87 (203)
..+.+|+|||....+...+.+.|+.. |+.+............+....+|.||+--. .+...+ .+.+.+++
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDA------GFHIISADSGGQCIDLLKKGFSGVVLLDIM--MPGMDGWDTIRAILDN 76 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTCCCEEEEEESC--CSSSCHHHHHHHHHHT
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHC------CeEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhh
Confidence 34678999998887788888999888 887655432111122333446888887322 111122 24555665
Q ss_pred -hCCCCcee
Q 037843 88 -LGPTMPLF 95 (203)
Q Consensus 88 -~~~~~Pil 95 (203)
.....|++
T Consensus 77 ~~~~~~pii 85 (142)
T 3cg4_A 77 SLEQGIAIV 85 (142)
T ss_dssp TCCTTEEEE
T ss_pred cccCCCCEE
Confidence 34568887
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.15 Score=35.28 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
++.+|+|||........+.+.|+.. |+.+..........+.+....+|.||+-- .+...+ .+.+.+++..
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKD------GFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEF 73 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGG------TCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHC
Confidence 3578999998877778888888887 88876543211112233334789999843 121111 2345555555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~pii 79 (142)
T 2qxy_A 74 PDTKVA 79 (142)
T ss_dssp TTCEEE
T ss_pred CCCCEE
Confidence 678988
|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.33 Score=33.60 Aligned_cols=78 Identities=12% Similarity=0.262 Sum_probs=45.6
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCC-Ccc-hHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQ-ESG-ISFRTV 85 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~-~~~-~~~~~i 85 (203)
+..+.+|+|||....+...+.+.|+.. |+.+..........+.+.. ..+|.||+--. .+. ..+ .+.+.+
T Consensus 2 ~~~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l 73 (140)
T 3h5i_A 2 SLKDKKILIVEDSKFQAKTIANILNKY------GYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEGMDGVQTALAI 73 (140)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSSCCHHHHHHHH
T ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHc------CCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCCCCHHHHHHHH
Confidence 334578999998887888888999888 8887654321111233333 46899888321 111 122 234555
Q ss_pred HHhCCCCcee
Q 037843 86 LELGPTMPLF 95 (203)
Q Consensus 86 ~~~~~~~Pil 95 (203)
++. .+.|++
T Consensus 74 ~~~-~~~~ii 82 (140)
T 3h5i_A 74 QQI-SELPVV 82 (140)
T ss_dssp HHH-CCCCEE
T ss_pred HhC-CCCCEE
Confidence 554 568887
|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.24 Score=33.48 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=47.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|....+...+.+.|+.. |+.+........-.+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEML------GFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPM 74 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHT------TEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHc------CCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhc
Confidence 468999998877788888999888 887765432111122333447899998321 111222 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 75 ~~~~~ii 81 (127)
T 3i42_A 75 EKTSKFV 81 (127)
T ss_dssp SSCCEEE
T ss_pred cCCCCEE
Confidence 5678888
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.21 Score=34.67 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=46.0
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEECCCCCCCCCcc-hHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVISPGPGAPQESG-ISFRT 84 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~ 84 (203)
|+..+.+|+|||........+.+.|+.. |..+.+...... ..+.+....+|.||+--. .+...+ .+.+.
T Consensus 1 M~~~~~~ILivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~ 72 (144)
T 3kht_A 1 MSLRSKRVLVVEDNPDDIALIRRVLDRK------DIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSA 72 (144)
T ss_dssp ----CEEEEEECCCHHHHHHHHHHHHHT------TCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHH
Confidence 3434678999998877788888999888 877444332211 122333447898888221 121122 23455
Q ss_pred HHH--hCCCCcee
Q 037843 85 VLE--LGPTMPLF 95 (203)
Q Consensus 85 i~~--~~~~~Pil 95 (203)
+++ ...+.|++
T Consensus 73 lr~~~~~~~~pii 85 (144)
T 3kht_A 73 VRKPGANQHTPIV 85 (144)
T ss_dssp HHSSSTTTTCCEE
T ss_pred HHhcccccCCCEE
Confidence 555 34678988
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.39 Score=33.19 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=47.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|||....+...+.+.|+.. |..+............+. ...+|.||+--.- +...+ .+.+.+++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~ 74 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEID------GNEVLTASSSTEGLRIFTENCNSIDVVITDMKM--PKLSGMDILREIKKI 74 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC--SSSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC------CceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC--CCCcHHHHHHHHHHh
Confidence 578999998877788888999888 887765432111122233 3468999883221 22222 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 75 ~~~~~ii 81 (143)
T 3jte_A 75 TPHMAVI 81 (143)
T ss_dssp CTTCEEE
T ss_pred CCCCeEE
Confidence 5678988
|
| >2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.26 Score=36.76 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=40.1
Q ss_pred cCCCCCcEEEEeC---------CchHHHHHHHHHH---HhhhhhcCCceEE--EEeCCccc--HHHHhc----cCCCEEE
Q 037843 8 SKNDKNPIVVIDN---------YDSFTYNLCQYMG---ELELELSQGYHFE--VYRNDELT--VAELKR----KKPRGVV 67 (203)
Q Consensus 8 ~~~~~~~i~iid~---------~~~~~~~l~~~l~---~~~~~~~~g~~~~--v~~~~~~~--~~~l~~----~~~dgii 67 (203)
|.+.+++|.||-- .+++...+.++++ +. |+.+. +++ |+.. .+.+.. .++|.||
T Consensus 1 ~~~~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~------G~~v~~~iv~-Dd~~~I~~~l~~~~~~~~~DlVi 73 (178)
T 2pbq_A 1 MSEKKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIIT------PFEVEYRVIP-DERDLIEKTLIELADEKGCSLIL 73 (178)
T ss_dssp ----CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCS------CCEEEEEEEC-SCHHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhC------CCEEEEEEcC-CCHHHHHHHHHHHHhcCCCCEEE
Confidence 4555788988843 3456667888887 66 87662 233 3211 122221 1589999
Q ss_pred ECCCCCCCCCcchHHHHHHHh
Q 037843 68 ISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 68 l~GG~~~~~~~~~~~~~i~~~ 88 (203)
.+||.|- ...+...+.+.++
T Consensus 74 ttGG~g~-g~~D~t~ea~~~~ 93 (178)
T 2pbq_A 74 TTGGTGP-APRDVTPEATEAV 93 (178)
T ss_dssp EESCCSS-STTCCHHHHHHHH
T ss_pred ECCCCCC-CCCCchHHHHHHH
Confidence 9999763 3344444555543
|
| >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.55 Score=31.02 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
|.+|+|+|....+...+.+.++.. |+.+..........+.+....+|.+++-=. .+...+ .+.+.+++...
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~ 72 (116)
T 3a10_A 1 MKRILVVDDEPNIRELLKEELQEE------GYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKK 72 (116)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCT
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCC
Confidence 358999998887778888888887 887764432111122233346898888321 122222 23455665556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (116)
T 3a10_A 73 DAKII 77 (116)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 68887
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.27 Score=34.18 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH--
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE-- 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~-- 87 (203)
++.+|+|||....+...+.+.|+.. |+.+............+....+|.||+--.. +...+ .+.+.+++
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~ 78 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQE------GFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKISGMDLFNSLKKNP 78 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHH------TEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHTST
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHc------CCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCCCHHHHHHHHHcCc
Confidence 4678999999888888899999888 8877654321111222333368999983221 11122 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....||+
T Consensus 79 ~~~~~pii 86 (147)
T 2zay_A 79 QTASIPVI 86 (147)
T ss_dssp TTTTSCEE
T ss_pred ccCCCCEE
Confidence 34578988
|
| >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A | Back alignment and structure |
|---|
Probab=93.18 E-value=0.25 Score=33.15 Aligned_cols=76 Identities=13% Similarity=0.291 Sum_probs=46.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC-CCcc-hHHHHHHHh--
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP-QESG-ISFRTVLEL-- 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~~~-~~~~~i~~~-- 88 (203)
.+|+|+|........+.+.++.. |+.+............+....+|.||+--. .+ ...+ .+.+.+++.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~--~~~~~~g~~~~~~l~~~~~ 77 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGR------GFTVDETTDGKGSVEQIRRDRPDLVVLAVD--LSAGQNGYLICGKLKKDDD 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHH------TCEEEEECCHHHHHHHHHHHCCSEEEEESB--CGGGCBHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhc------CceEEEecCHHHHHHHHHhcCCCEEEEeCC--CCCCCCHHHHHHHHhcCcc
Confidence 48999998887788888899888 888765432111122233336899988321 11 1112 235556654
Q ss_pred CCCCcee-e
Q 037843 89 GPTMPLF-C 96 (203)
Q Consensus 89 ~~~~Pil-C 96 (203)
....|++ .
T Consensus 78 ~~~~~ii~~ 86 (127)
T 2gkg_A 78 LKNVPIVII 86 (127)
T ss_dssp TTTSCEEEE
T ss_pred ccCCCEEEE
Confidence 4678988 5
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.35 Score=33.98 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=45.7
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHH-hhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGE-LELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTV 85 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~-~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i 85 (203)
+..+.+|+|+|....+...+.+.|+. . |+.+...-.+.. ....+....+|.||+--.. +...+ .+.+.+
T Consensus 2 ~~~~~~ILivdd~~~~~~~l~~~L~~~~------~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~~g~~~~~~l 73 (153)
T 3cz5_A 2 SLSTARIMLVDDHPIVREGYRRLIERRP------GYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGPGGIEATRHI 73 (153)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHTTST------TEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSSCHHHHHHHH
T ss_pred CCcccEEEEECCcHHHHHHHHHHHhhCC------CcEEEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHH
Confidence 33457899999887777788888876 5 777652222211 1222334468999983221 11122 245556
Q ss_pred HHhCCCCcee
Q 037843 86 LELGPTMPLF 95 (203)
Q Consensus 86 ~~~~~~~Pil 95 (203)
++.....|++
T Consensus 74 ~~~~~~~~ii 83 (153)
T 3cz5_A 74 RQWDGAARIL 83 (153)
T ss_dssp HHHCTTCCEE
T ss_pred HHhCCCCeEE
Confidence 6655678888
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.33 Score=34.16 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=47.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+++|+|||....+...+.+.|+.. |+.+........-.+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~ 85 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPL------PYTLHFARDATQALQLLASREVDLVISAAH--LPQMDGPTLLARIHQQYP 85 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTS------SCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHCT
T ss_pred CceEEEECCCHHHHHHHHHHhccc------CcEEEEECCHHHHHHHHHcCCCCEEEEeCC--CCcCcHHHHHHHHHhHCC
Confidence 578999998877778888888887 887765432111122333447899998321 111122 24455666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 86 ~~~ii 90 (153)
T 3hv2_A 86 STTRI 90 (153)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 78988
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.4 Score=33.61 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCC--ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQG--YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g--~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
..|.+|+|||....+...+.+.|+.. | ..+........-.+.+....+|.||+--. .+...+ .+.+.++
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~ 89 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQ------PDVESVLQAKNGQEAIQLLEKESVDIAILDVE--MPVKTGLEVLEWIR 89 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHTTSCCSEEEECSS--CSSSCHHHHHHHHH
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHhhccCCCEEEEeCC--CCCCcHHHHHHHHH
Confidence 44788999998877778888888876 5 33333321111122333447899998322 111222 2455566
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+...+.||+
T Consensus 90 ~~~~~~~ii 98 (150)
T 4e7p_A 90 SEKLETKVV 98 (150)
T ss_dssp HTTCSCEEE
T ss_pred HhCCCCeEE
Confidence 655678888
|
| >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.24 Score=37.91 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
|++|+.+|+|+|....+...+...|+.. |+.+..........+.+....+|.||+-=. .+...+ .+.+.++
T Consensus 1 M~~m~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~~~~~lr 72 (238)
T 2gwr_A 1 MDTMRQRILVVDDDASLAEMLTIVLRGE------GFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGMNGIDVCRVLR 72 (238)
T ss_dssp -CCCCCEEEEECSCHHHHHHHHHHHHHT------TCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHH
T ss_pred CCcccCeEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHH
Confidence 5667779999998887778888888887 888765432111223333346899988321 122222 2334444
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+.. ..|++
T Consensus 73 ~~~-~~~ii 80 (238)
T 2gwr_A 73 ADS-GVPIV 80 (238)
T ss_dssp TTC-CCCEE
T ss_pred hCC-CCcEE
Confidence 433 68888
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.31 Score=33.36 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=45.7
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccC-CCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKK-PRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~-~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
.+.+|+|+|....+...+.+.|+.. |+.+............+.... +|.||+--. .+...+ .+.+.+++.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 77 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSR------GIDAVGADGAEEARLYLHYQKRIGLMITDLR--MQPESGLDLIRTIRAS 77 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHT------TCCEEEESSHHHHHHHHHHCTTEEEEEECSC--CSSSCHHHHHHHHHTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHc------CceEEEeCCHHHHHHHHHhCCCCcEEEEecc--CCCCCHHHHHHHHHhc
Confidence 3688999998887788888999888 888765432111112232234 788888321 111222 234555554
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
....|++
T Consensus 78 ~~~~~~ii 85 (136)
T 3hdv_A 78 ERAALSII 85 (136)
T ss_dssp TTTTCEEE
T ss_pred CCCCCCEE
Confidence 4668888
|
| >3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.63 Score=34.61 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=49.5
Q ss_pred CCcEEEEeC---------CchHHHHHHHHHHHhhhhhcCCceEEEEe--CCcc-c-HHHHhc--cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDN---------YDSFTYNLCQYMGELELELSQGYHFEVYR--NDEL-T-VAELKR--KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~---------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~-~-~~~l~~--~~~dgiil~GG~~~~~ 76 (203)
++++.||-- .+++...+.+++++. |+.+..+. .|+. . .+.+.. .++|.||.+||.|- .
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~------G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~-~ 75 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYH------GYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGP-T 75 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSS-S
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcC-C
Confidence 367777733 356677889999998 88765332 2321 1 112221 15899999999764 4
Q ss_pred CcchHHHHHHH-hCCCCceeehhHHHHHHHhC
Q 037843 77 ESGISFRTVLE-LGPTMPLFCMGLKCIGEALE 107 (203)
Q Consensus 77 ~~~~~~~~i~~-~~~~~PilClG~Qlla~a~g 107 (203)
..+...+.+.+ ++..+++.=--++.|-..++
T Consensus 76 ~~D~T~ea~a~~~~~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 76 FDDMTVEGFAKCIGQDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp TTCCHHHHHHHHHTCCCEECHHHHHHHHHHHC
T ss_pred cccchHHHHHHHcCCCeeeCHHHHHHHHHHHc
Confidence 44445555554 45334433222444555554
|
| >3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.11 Score=42.05 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCCcEEEEeCCc----hHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcc----c---HHHHhccCCCEEEECCCCCCCC--
Q 037843 11 DKNPIVVIDNYD----SFTYNLCQYMGELELELSQGY-HFEVYRNDEL----T---VAELKRKKPRGVVISPGPGAPQ-- 76 (203)
Q Consensus 11 ~~~~i~iid~~~----~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~----~---~~~l~~~~~dgiil~GG~~~~~-- 76 (203)
..++|++|-..+ .+...+.++|+++ |+ .+.+++.... + .+.+. +.|+|+++||-....
T Consensus 55 ~~~~I~~IptAs~~~~~~~~~~~~~f~~l------G~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~ 126 (291)
T 3en0_A 55 NDAIIGIIPSASREPLLIGERYQTIFSDM------GVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCG 126 (291)
T ss_dssp GGCEEEEECTTCSSHHHHHHHHHHHHHHH------CCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHH
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHc------CCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHH
Confidence 357999996543 2345567788888 98 7777754211 1 12344 579999988843210
Q ss_pred --CcchHHHHHHH-hCCC-Ccee--ehhHHHHHH
Q 037843 77 --ESGISFRTVLE-LGPT-MPLF--CMGLKCIGE 104 (203)
Q Consensus 77 --~~~~~~~~i~~-~~~~-~Pil--ClG~Qlla~ 104 (203)
....+.+.|++ +.++ .|+. |-|.-+++.
T Consensus 127 ~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 127 LLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 11234566666 4566 8999 999988865
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.55 Score=32.93 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|||....+...+.+.|+.. |+.+............+....+|.||+--.. +...+ .+.+.+++...
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRL------GCNIITFTSPLDALEALKGTSVQLVISDMRM--PEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SSSCHHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHc------CCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHHHHhCC
Confidence 468999998887778888888887 8887654321111222333468999883221 11122 23455665556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 79 ~~~ii 83 (154)
T 2rjn_A 79 DIERV 83 (154)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 78988
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.4 Score=32.91 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHH-hhhhhcCCce-EEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGE-LELELSQGYH-FEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~-~~~~~~~g~~-~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
.+.+|+|+|........+.+.|+. . |+. +..........+.+....+|.||+--.. +...+ .+.+.+++
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~------~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLF------PYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VGMDGFSICHRIKS 78 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHC------TTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TTSCHHHHHHHHHT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhcc------CccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CCCcHHHHHHHHHh
Confidence 357899999888778888888888 6 888 5544321111223333468999984321 11122 23455555
Q ss_pred --hCCCCcee
Q 037843 88 --LGPTMPLF 95 (203)
Q Consensus 88 --~~~~~Pil 95 (203)
.....|++
T Consensus 79 ~~~~~~~~ii 88 (143)
T 3cnb_A 79 TPATANIIVI 88 (143)
T ss_dssp STTTTTSEEE
T ss_pred CccccCCcEE
Confidence 34578888
|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.52 Score=30.84 Aligned_cols=75 Identities=17% Similarity=0.354 Sum_probs=45.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC--
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG-- 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~-- 89 (203)
++|+|+|........+.+.++.. |+.+............+....+|.+|+--.. +...+ .+.+.+++..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~------g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAA------GFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PDQSCLLLLQHLREHQAD 73 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHHHHCCSEEEEECST--TCCTHHHHHHHHHHTCCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhC------CcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CCCCHHHHHHHHHhcccc
Confidence 57999998877788888899888 8887654321111222333368999884321 11122 2345555543
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (119)
T 2j48_A 74 PHPPLV 79 (119)
T ss_dssp SSCCCE
T ss_pred CCCCEE
Confidence 578887
|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.18 Score=34.77 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
.+.+|+|+|....+...+.+.|+.. | +.+..........+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 84 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDAL------AIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDLLGKPGIVEARAL 84 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHT------SSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGGGGSTTHHHHHGG
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhc------CCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCchHHHHHHHHHhh
Confidence 3568999998887788888999888 8 87765432111111222336898887211 111112 245666665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 85 ~~~~~ii 91 (135)
T 3snk_A 85 WATVPLI 91 (135)
T ss_dssp GTTCCEE
T ss_pred CCCCcEE
Confidence 5578988
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.44 Score=33.77 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCCcccHHHHhcc--CCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFE-VYRNDELTVAELKRK--KPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~~~~~~~l~~~--~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
+.+|+|||....+...+.+.|+.. |+.+. .......-.+.+... .+|.||+--. .+...+ .+.+.+++
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~--l~~~~g~~~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSE------GFNIIDTAADGEEAVIKYKNHYPNIDIVTLXIT--MPKMDGITCLSNIME 107 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGCCEEEECSS--CSSSCHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHhcCCCCCEEEEecc--CCCccHHHHHHHHHh
Confidence 468999998877778888899888 88875 332111112233333 5799988322 111122 24555666
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....||+
T Consensus 108 ~~~~~~ii 115 (157)
T 3hzh_A 108 FDKNARVI 115 (157)
T ss_dssp HCTTCCEE
T ss_pred hCCCCcEE
Confidence 56678988
|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A | Back alignment and structure |
|---|
Probab=92.27 E-value=0.58 Score=32.05 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=44.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
.+.+|+|||........+.+.|+.. |+.+............+....+|.|| .++ ..+ .+.+.+++.
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvi-~~~-----~~g~~~~~~l~~~- 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVK------GFMADVTESLEDGEYLMDIRNYDLVM-VSD-----KNALSFVSRIKEK- 83 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHHHSCCSEEE-ECS-----TTHHHHHHHHHHH-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc------CcEEEEeCCHHHHHHHHHcCCCCEEE-EcC-----ccHHHHHHHHHhc-
Confidence 3578999998877778888889887 88876443211112223334689888 221 122 234555555
Q ss_pred C-CCcee
Q 037843 90 P-TMPLF 95 (203)
Q Consensus 90 ~-~~Pil 95 (203)
. ..|++
T Consensus 84 ~~~~~ii 90 (137)
T 2pln_A 84 HSSIVVL 90 (137)
T ss_dssp STTSEEE
T ss_pred CCCccEE
Confidence 5 78988
|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.27 Score=33.48 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=34.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+.+++|+|+|........+.+.|+.. |+.+..........+.+....+|.||+
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRD------HWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHC------CcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 34578999998877788888889887 888765432111122333447898888
|
| >3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.21 Score=39.73 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=35.0
Q ss_pred CCCcEEEEeCC--chHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEEC
Q 037843 11 DKNPIVVIDNY--DSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVIS 69 (203)
Q Consensus 11 ~~~~i~iid~~--~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~ 69 (203)
.|++||||+-. ......+.++|+.. |+.|++++..+. +.+++. +||.||++
T Consensus 3 ~m~~vLiV~g~~~~~~a~~l~~aL~~~------g~~V~~i~~~~~~~~~~~L~--~yDvIIl~ 57 (259)
T 3rht_A 3 AMTRVLYCGDTSLETAAGYLAGLMTSW------QWEFDYIPSHVGLDVGELLA--KQDLVILS 57 (259)
T ss_dssp ---CEEEEESSCTTTTHHHHHHHHHHT------TCCCEEECTTSCBCSSHHHH--TCSEEEEE
T ss_pred CCceEEEECCCCchhHHHHHHHHHHhC------CceEEEecccccccChhHHh--cCCEEEEc
Confidence 46899999632 12345677788888 999999876543 456666 68999996
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.68 Score=31.61 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=45.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE-EeCCcccHHHHhccCCCEEEECCCCCCC-CCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV-YRNDELTVAELKRKKPRGVVISPGPGAP-QESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v-~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~~~-~~~~~i~~~ 88 (203)
+.+|+|||....+...+.+.|+.. |+.+.. ..........+....+|.||+--. .+ ...+ .+.+.+++.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESL------GYDVLGVFDNGEEAVRCAPDLRPDIALVDIM--LCGALDGVETAARLAAG 80 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHH------TCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CCSSSCHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHC------CCeeEEEECCHHHHHHHHHhCCCCEEEEecC--CCCCCCHHHHHHHHHhC
Confidence 578999998877788888999888 888763 322111122233336899998322 11 1112 234555555
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
...|++
T Consensus 81 -~~~~ii 86 (140)
T 3cg0_A 81 -CNLPII 86 (140)
T ss_dssp -SCCCEE
T ss_pred -CCCCEE
Confidence 678988
|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=91.97 E-value=0.65 Score=32.01 Aligned_cols=80 Identities=13% Similarity=0.230 Sum_probs=46.4
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc----------cCCCEEEECCCCCCC
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR----------KKPRGVVISPGPGAP 75 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~----------~~~dgiil~GG~~~~ 75 (203)
|..++.+|+|+|....+...+.+.|+.. |. .+..........+.+.. ..+|.||+--.- +
T Consensus 2 ~~~~~~~iLivdd~~~~~~~l~~~L~~~------g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~ 73 (149)
T 1k66_A 2 VGNATQPLLVVEDSDEDFSTFQRLLQRE------GVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--P 73 (149)
T ss_dssp BSCTTSCEEEECCCHHHHHHHHHHHHHT------TBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--S
T ss_pred CCCCCccEEEEECCHHHHHHHHHHHHHc------CCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--C
Confidence 3455788999998887788888899888 77 55444321111223332 468999983221 1
Q ss_pred CCcc-hHHHHHHHhC--CCCcee
Q 037843 76 QESG-ISFRTVLELG--PTMPLF 95 (203)
Q Consensus 76 ~~~~-~~~~~i~~~~--~~~Pil 95 (203)
...+ .+.+.+++.. ...|++
T Consensus 74 ~~~g~~~~~~l~~~~~~~~~~ii 96 (149)
T 1k66_A 74 GTDGREVLQEIKQDEVLKKIPVV 96 (149)
T ss_dssp SSCHHHHHHHHTTSTTGGGSCEE
T ss_pred CCCHHHHHHHHHhCcccCCCeEE
Confidence 1122 2234444432 467887
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.9 Score=30.78 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=46.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFE-VYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.+|+|+|....+...+.+.++.. |..+. .......-...+....+|.||+--.- +...+ .+.+.+++...
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~ 73 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKN------DIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQY 73 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHT------TEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTC
T ss_pred eEEEEEcCCHHHHHHHHHHHhhC------CcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCCChHHHHHHHHhcCC
Confidence 57999998887788888999888 87765 33222122233444478999983221 22222 24555666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
+.|++
T Consensus 74 ~~~ii 78 (134)
T 3f6c_A 74 SGIII 78 (134)
T ss_dssp CSEEE
T ss_pred CCeEE
Confidence 78888
|
| >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=0.75 Score=31.27 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=45.1
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
|+.+|+|+|....+...+...++.. |..+............+....+|.||+--. .+...+ .+.+.+++..
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~ 73 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERS------GYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQK 73 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHC------CcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCC
Confidence 3468999998877777788888877 887654322111122223336898888321 122122 2345555544
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (136)
T 1mvo_A 74 LMFPIL 79 (136)
T ss_dssp CCCCEE
T ss_pred CCCCEE
Confidence 568887
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.38 Score=32.95 Aligned_cols=78 Identities=9% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCC---CCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG---APQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~---~~~~~~-~~~~~i~~ 87 (203)
+.+|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+--... .+...+ .+.+.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~ 76 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNH------FSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKR 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT------SSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhC------CcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHh
Confidence 468999998877778888888887 88876543211112223334688888832211 001122 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 77 ~~~~~~ii 84 (140)
T 2qr3_A 77 QYRDLPVV 84 (140)
T ss_dssp HCTTCCEE
T ss_pred hCcCCCEE
Confidence 55678988
|
| >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.72 Score=34.58 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
|+.+|+|+|....+...+.+.|+.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++..
T Consensus 1 M~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~ 72 (225)
T 1kgs_A 1 MNVRVLVVEDERDLADLITEALKKE------MFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESG 72 (225)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 4578999998877778888888887 888764322111122233347899988321 122222 2345556555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 73 ~~~~ii 78 (225)
T 1kgs_A 73 VNTPVL 78 (225)
T ss_dssp CCCCEE
T ss_pred CCCCEE
Confidence 678988
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=91.44 E-value=0.58 Score=32.87 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+++|+|||....+...+.+.|+.. |+.+............+....+|.||+--.. +...+ .+.+.+++...
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELA------GFTVSSFASATEALAGLSADFAGIVISDIRM--PGMDGLALFRKILALDP 74 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SSSCHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCCCHHHHHHHHHhhCC
Confidence 478999998887788888889887 8887654221001111222368988883321 11122 23455565556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~pii 79 (155)
T 1qkk_A 75 DLPMI 79 (155)
T ss_dssp TSCEE
T ss_pred CCCEE
Confidence 78988
|
| >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E | Back alignment and structure |
|---|
Probab=91.38 E-value=0.76 Score=30.73 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|....+...+.+.++.. |..+............+....+|.+|+-=. .+...+ .+.+.+++...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~ 74 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKE------GYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDE 74 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHC------CcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCC
Confidence 358999998877777888888877 887654322111122233336898887221 122122 23455555556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (124)
T 1srr_A 75 NIRVI 79 (124)
T ss_dssp TCEEE
T ss_pred CCCEE
Confidence 78988
|
| >3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A | Back alignment and structure |
|---|
Probab=91.16 E-value=0.88 Score=34.19 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCcEEEEeC--------CchHHHHHHHHHHHhhhhhcCCceEEE---EeCCccc-HHHHhc---cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDN--------YDSFTYNLCQYMGELELELSQGYHFEV---YRNDELT-VAELKR---KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~--------~~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~-~~~l~~---~~~dgiil~GG~~~~~ 76 (203)
++||.||-- .+++...+..++++. |+.+.. ++.+... .+.+.. .++|.||.+||.+ +.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~------G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts-~g 102 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEA------GFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG-VT 102 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHT------TEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS-SS
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC-CC
Confidence 578888832 567788899999998 887653 3322111 112221 3689999999976 34
Q ss_pred CcchHHHHHHHh
Q 037843 77 ESGISFRTVLEL 88 (203)
Q Consensus 77 ~~~~~~~~i~~~ 88 (203)
..+...+.+.++
T Consensus 103 ~~D~t~eal~~l 114 (185)
T 3rfq_A 103 PRDVTPESTREI 114 (185)
T ss_dssp TTCCHHHHHHTT
T ss_pred CcccHHHHHHHH
Confidence 444445555553
|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=91.11 E-value=1.2 Score=30.29 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=45.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.++.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~ 74 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFE------GYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRP 74 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHC------CceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCC
Confidence 468999998877778888888877 887764322111122233346898888221 122222 23455555556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (132)
T 3crn_A 75 GMKKI 79 (132)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 78988
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=90.79 E-value=2.8 Score=29.09 Aligned_cols=33 Identities=9% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCcEEEEe---CCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVID---NYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid---~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
.+.|+||- .-+.+.+.+.++|.+. |.++..+.+
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP 39 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGR 39 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESS
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECC
Confidence 46799993 3345677788888887 776655543
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A | Back alignment and structure |
|---|
Probab=90.71 E-value=0.6 Score=31.30 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=43.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|........+.+.++.. |+.+........-.+.+....+|.||+-=. .|...+ .+.+.+++. .
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~~-~ 72 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKE------GYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRKK-Y 72 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHTT-C
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC------CEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHhc-C
Confidence 468999998877777888888887 888765422111122333447899888211 122222 233444442 3
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (120)
T 3f6p_A 73 DMPII 77 (120)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 68887
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=90.68 E-value=0.53 Score=31.72 Aligned_cols=76 Identities=14% Similarity=0.268 Sum_probs=45.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|....+...+.+.++.. |+.+........-.+.+....+|.||+-= ..|...+ .+.+.+++.
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~al~~l~~~~~dlvllD~--~~p~~~g~~~~~~l~~~~~ 73 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKE------GYEVIEAENGQIALEKLSEFTPDLIVLXI--MMPVMDGFTVLKKLQEKEE 73 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHTTBCCSEEEECS--CCSSSCHHHHHHHHHTSTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHC------CcEEEEeCCHHHHHHHHHhcCCCEEEEec--cCCCCcHHHHHHHHHhccc
Confidence 468999998777777888888887 88876442211112233344789888821 1222222 234445443
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
..+.|++
T Consensus 74 ~~~~pii 80 (122)
T 3gl9_A 74 WKRIPVI 80 (122)
T ss_dssp TTTSCEE
T ss_pred ccCCCEE
Confidence 2568988
|
| >2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1 | Back alignment and structure |
|---|
Probab=90.66 E-value=0.28 Score=36.15 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=38.9
Q ss_pred CCCCCcEEEEe---------CCchHHHHHHHH----HHHhhhhhcCCceEE---EEeCCccc--HHHHhc--c-CCCEEE
Q 037843 9 KNDKNPIVVID---------NYDSFTYNLCQY----MGELELELSQGYHFE---VYRNDELT--VAELKR--K-KPRGVV 67 (203)
Q Consensus 9 ~~~~~~i~iid---------~~~~~~~~l~~~----l~~~~~~~~~g~~~~---v~~~~~~~--~~~l~~--~-~~dgii 67 (203)
+.|++++.||- -.+++...+.+. +++. |+.+. +++ |+.. .+.+.. . ++|.||
T Consensus 2 ~~m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~------G~~v~~~~iv~-Dd~~~I~~~l~~a~~~~~DlVi 74 (167)
T 2g2c_A 2 NAMHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDY------SYELISEVVVP-EGYDTVVEAIATALKQGARFII 74 (167)
T ss_dssp --CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----C------EEEEEEEEEEC-SSHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHC------CCEEeEEEEeC-CCHHHHHHHHHHHHhCCCCEEE
Confidence 34567888883 345667788888 8888 87664 333 3211 122222 1 489999
Q ss_pred ECCCCCCCCCcchHHHHHHH
Q 037843 68 ISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 68 l~GG~~~~~~~~~~~~~i~~ 87 (203)
.+||.| +...+...+.+.+
T Consensus 75 ttGG~g-~~~~D~t~ea~~~ 93 (167)
T 2g2c_A 75 TAGGTG-IRAKNQTPEATAS 93 (167)
T ss_dssp EESCCS-SSTTCCHHHHHHT
T ss_pred ECCCCC-CCCCcChHHHHHH
Confidence 999976 3344444455554
|
| >3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A | Back alignment and structure |
|---|
Probab=90.38 E-value=0.42 Score=35.17 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCcEEEEeC---------CchHHHHHHHHHHHhhhhhcCCceEE---EEeCCcccH-HHHhc---cCCCEEEECCCCCCC
Q 037843 12 KNPIVVIDN---------YDSFTYNLCQYMGELELELSQGYHFE---VYRNDELTV-AELKR---KKPRGVVISPGPGAP 75 (203)
Q Consensus 12 ~~~i~iid~---------~~~~~~~l~~~l~~~~~~~~~g~~~~---v~~~~~~~~-~~l~~---~~~dgiil~GG~~~~ 75 (203)
+++|.||-- .+++...+..++++. |+.+. +++.+ ... +.+.. .++|.||.+||.+ +
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~------G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s-~ 78 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQ------GFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTG-I 78 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHT------TCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCS-S
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHC------CCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCC-C
Confidence 477888833 356677889999998 88764 34332 221 22221 2689999999975 3
Q ss_pred CCcchHHHHHHHh
Q 037843 76 QESGISFRTVLEL 88 (203)
Q Consensus 76 ~~~~~~~~~i~~~ 88 (203)
...+...+.+.++
T Consensus 79 g~~D~t~eal~~~ 91 (164)
T 3pzy_A 79 APTDSTPDQTVAV 91 (164)
T ss_dssp STTCCHHHHHHTT
T ss_pred CCCccHHHHHHHH
Confidence 4445555556553
|
| >2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 | Back alignment and structure |
|---|
Probab=90.33 E-value=1.4 Score=32.62 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=46.6
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh-
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-GISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~~~~~~i~~~- 88 (203)
|++|+||- ...+++..+++.+.+...+ ..|++++++...+.+.+++. ++|+||| |.|--.... ..+..++.++
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~-~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~ 79 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARS-LEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVL 79 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHT-STTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTG
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhh-cCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHh
Confidence 46787773 3345677777766543211 02788888876555667776 4699999 554332222 2344555543
Q ss_pred ------CCCCcee
Q 037843 89 ------GPTMPLF 95 (203)
Q Consensus 89 ------~~~~Pil 95 (203)
-.++|+.
T Consensus 80 ~~~~~~l~gk~~~ 92 (188)
T 2ark_A 80 GDLWGEIDGKIAC 92 (188)
T ss_dssp GGTTTSCTTCEEE
T ss_pred hhhHHHhCCCeEE
Confidence 1467776
|
| >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.86 Score=31.33 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=43.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.+|+|+|....+...+.+.++.. |..+..........+.+....+|.||+-=. .+...+ .+.+.+++....
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~ 76 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDE------PYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIP 76 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTS------SSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhc------CceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCC
Confidence 48999998877777788888776 887654322111122233336898888221 122222 234556655566
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 77 ~~ii 80 (137)
T 3cfy_A 77 TSVI 80 (137)
T ss_dssp CEEE
T ss_pred CCEE
Confidence 8887
|
| >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=89.98 E-value=1.3 Score=29.81 Aligned_cols=75 Identities=8% Similarity=0.083 Sum_probs=43.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+++|+|+|........+...++ . |..+..........+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~------~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 74 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-G------EFDCTTAADGASGLQQALAHPPDVLISDVN--MDGMDGYALCGHFRSEPT 74 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-T------TSEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHSTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-C------CcEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhCCc
Confidence 4789999987777777777776 5 888765432111123333447899998322 122222 234555553
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
..+.|++
T Consensus 75 ~~~~pii 81 (133)
T 3nhm_A 75 LKHIPVI 81 (133)
T ss_dssp TTTCCEE
T ss_pred cCCCCEE
Confidence 3478888
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y | Back alignment and structure |
|---|
Probab=89.96 E-value=1 Score=29.78 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=44.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|+|....+...+.+.++.. |..+...-.+.. ....+....+|.|++-=. .+...+ .+.+.+++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~------g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~ 73 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKA------GYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKID 73 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHC
T ss_pred CceEEEEcCcHHHHHHHHHHHhhc------CcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhhC
Confidence 468999998877777888888877 887532222211 122233336898887321 121122 2345555555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (120)
T 1tmy_A 74 PNAKII 79 (120)
T ss_dssp TTCCEE
T ss_pred CCCeEE
Confidence 678887
|
| >2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A | Back alignment and structure |
|---|
Probab=89.85 E-value=0.45 Score=34.89 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=40.6
Q ss_pred CCcEEEEeC---------CchHHHHHHHHHHHhhhhhcCCceEEE---EeCCccc--HHHHhc---c-CCCEEEECCCCC
Q 037843 12 KNPIVVIDN---------YDSFTYNLCQYMGELELELSQGYHFEV---YRNDELT--VAELKR---K-KPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~---------~~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~--~~~l~~---~-~~dgiil~GG~~ 73 (203)
|++|.||-- .+++...+.+++++. |+.+.. ++ |+.. .+.+.. . ++|.||.+||.|
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~------G~~v~~~~iv~-Dd~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGG------PFEVAAYELVP-DEPPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTS------SEEEEEEEEEC-SCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHC------CCeEeEEEEcC-CCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 467777743 356677888888888 887643 33 3211 122221 1 589999999976
Q ss_pred CCCCcchHHHHHHH
Q 037843 74 APQESGISFRTVLE 87 (203)
Q Consensus 74 ~~~~~~~~~~~i~~ 87 (203)
- ...+...+.+.+
T Consensus 74 ~-g~~D~t~ea~~~ 86 (164)
T 2is8_A 74 L-APRDRTPEATRE 86 (164)
T ss_dssp S-STTCCHHHHHHT
T ss_pred C-CCCCChHHHHHH
Confidence 3 344444555555
|
| >2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.23 Score=34.70 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=49.3
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCCCCCCcch-HHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPGAPQESGI-SFRTV 85 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i 85 (203)
|+..+.||+|+|-.......+.+.|+.. |+.+.-.-.+. .-.+.+....||.|++= -..|.-.+. +.+.+
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~------G~~v~~~a~~g~eAl~~~~~~~~DlvllD--i~mP~~~G~el~~~l 75 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCEL------GHEVAATASRMQEALDIARKGQFDIAIID--VNLDGEPSYPVADIL 75 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHH------CCCCCBCSCCHHHHHHHHHHCCSSEEEEC--SSSSSCCSHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhCCCCEEEEe--cCCCCCCHHHHHHHH
Confidence 5566789999998777888899999998 98753211111 11222334479999881 112332332 34455
Q ss_pred HHhCCCCcee-ehh
Q 037843 86 LELGPTMPLF-CMG 98 (203)
Q Consensus 86 ~~~~~~~Pil-ClG 98 (203)
++ .++||+ +=|
T Consensus 76 r~--~~ipvI~lTa 87 (123)
T 2lpm_A 76 AE--RNVPFIFATG 87 (123)
T ss_dssp HH--TCCSSCCBCT
T ss_pred Hc--CCCCEEEEec
Confidence 54 469988 544
|
| >2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=89.62 E-value=1 Score=30.75 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=44.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|+|....+...+.+.|+.. |+.+............+.. ..+|.||+--. .+...+ .+.+.+++..
T Consensus 15 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 15 PFRVTLVEDEPSHATLIQYHLNQL------GAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHc------CCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhC
Confidence 578999998887788888889887 8876544321111222333 46899888321 111112 1233344333
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 87 ~~~~ii 92 (138)
T 2b4a_A 87 KQPSVL 92 (138)
T ss_dssp SCCEEE
T ss_pred CCCCEE
Confidence 467777
|
| >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=89.56 E-value=1 Score=30.82 Aligned_cols=76 Identities=11% Similarity=0.224 Sum_probs=44.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc------cCCCEEEECCCCCCCCCcc-hHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR------KKPRGVVISPGPGAPQESG-ISF 82 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~------~~~dgiil~GG~~~~~~~~-~~~ 82 (203)
+.+|+|+|....+...+.+.|+.. |. .+............+.. ..+|.||+--. .+...+ .+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~------g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~~~g~~~~ 78 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKI------SSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN--IPKMNGIEFL 78 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHH------CTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT--CTTSCHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHh------CCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC--CCCCCHHHHH
Confidence 468999999887888888999888 77 55554321111223332 46899988322 111122 233
Q ss_pred HHHHHhC--CCCcee
Q 037843 83 RTVLELG--PTMPLF 95 (203)
Q Consensus 83 ~~i~~~~--~~~Pil 95 (203)
+.+++.. ...|++
T Consensus 79 ~~l~~~~~~~~~~ii 93 (143)
T 2qvg_A 79 KELRDDSSFTDIEVF 93 (143)
T ss_dssp HHHTTSGGGTTCEEE
T ss_pred HHHHcCccccCCcEE
Confidence 4444432 568888
|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=89.54 E-value=3.7 Score=28.11 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=44.0
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC-CCCcch--HHHHHHHh-
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA-PQESGI--SFRTVLEL- 88 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~-~~~~~~--~~~~i~~~- 88 (203)
+|+|+ ....+++..+++.+.+...+ .|+++++++..+.+.+++. ++|+||| |.|-- -...+. +..++.++
T Consensus 1 ~i~iiy~S~tGnT~~~a~~i~~~l~~--~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~ 75 (137)
T 2fz5_A 1 MVEIVYWSGTGNTEAMANEIEAAVKA--AGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLA 75 (137)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHH--TTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHG
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHh--CCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhh
Confidence 35555 34446677777666543211 2788888876555566776 5799999 44422 122334 55555553
Q ss_pred --CCCCcee
Q 037843 89 --GPTMPLF 95 (203)
Q Consensus 89 --~~~~Pil 95 (203)
-.++|+.
T Consensus 76 ~~l~~k~~~ 84 (137)
T 2fz5_A 76 PKLKGKKVG 84 (137)
T ss_dssp GGCSSCEEE
T ss_pred hhcCCCEEE
Confidence 2567766
|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A | Back alignment and structure |
|---|
Probab=89.33 E-value=2.5 Score=27.78 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=43.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|+|........+.+.++.. |..+............+....+|.+|+--. .+...+ .+.+.+++.....
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~ 73 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDA------GHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSL 73 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHHHHHHHHHHHhhc------CCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCC
Confidence 6899998777777788888877 887665432111122233346899888221 122222 2345555545568
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 ~ii 76 (121)
T 2pl1_A 74 PIL 76 (121)
T ss_dssp CEE
T ss_pred CEE
Confidence 887
|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=89.31 E-value=1.7 Score=29.39 Aligned_cols=76 Identities=11% Similarity=0.204 Sum_probs=45.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc-------cCCCEEEECCCCCCCCCcc-hH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR-------KKPRGVVISPGPGAPQESG-IS 81 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~-------~~~dgiil~GG~~~~~~~~-~~ 81 (203)
+++|+|+|....+...+.+.|+.. |. .+........-...+.. ..+|.||+--.. +...+ .+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANS------TVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PKKDGREV 73 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTC------SSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SSSCHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhc------CCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--CcccHHHH
Confidence 468999998887788888999888 77 55443221111222332 468999983321 22122 23
Q ss_pred HHHHHHhC--CCCcee
Q 037843 82 FRTVLELG--PTMPLF 95 (203)
Q Consensus 82 ~~~i~~~~--~~~Pil 95 (203)
.+.+++.. ...|++
T Consensus 74 ~~~l~~~~~~~~~pii 89 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVV 89 (140)
T ss_dssp HHHHHHSTTGGGSCEE
T ss_pred HHHHHcCcccccccEE
Confidence 45555543 568888
|
| >1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1 | Back alignment and structure |
|---|
Probab=89.30 E-value=1.1 Score=32.91 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=41.6
Q ss_pred CCcEEEEe-------CCchHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--c--CCCEEEECCCCCCCC
Q 037843 12 KNPIVVID-------NYDSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--K--KPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid-------~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~--~~dgiil~GG~~~~~ 76 (203)
+++|.||- -.+++...+.+.|++. |+.+..+. .|+.. .+.+.. . ++|.||.+||.|- .
T Consensus 13 ~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~------G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~-g 85 (169)
T 1y5e_A 13 EVRCKIVTISDTRTEETDKSGQLLHELLKEA------GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI-T 85 (169)
T ss_dssp CCEEEEEEECSSCCTTTCHHHHHHHHHHHHH------TCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS-S
T ss_pred CCEEEEEEEcCccCeeccChHHHHHHHHHHC------CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC-C
Confidence 46787773 2456677888999998 88764321 23211 122221 2 5899999999763 3
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 86 ~~D~t~ea~~~ 96 (169)
T 1y5e_A 86 KRDVTIEAVSA 96 (169)
T ss_dssp TTCCHHHHHHT
T ss_pred CCCCcHHHHHH
Confidence 44444555555
|
| >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A | Back alignment and structure |
|---|
Probab=89.29 E-value=1.1 Score=37.03 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=46.5
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
|.+++.+|+|||-...+...+.+.|+.. |+.+.....-..-.+.+....+|.||+= ...|...+ .+.+.++
T Consensus 1 M~~~~~~iLivdD~~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~~~~~~~dlvllD--~~mp~~~G~~~~~~lr 72 (394)
T 3eq2_A 1 MHKVSATLLIIDDDEVVRESLAAYLEDS------NFKVLQALNGLQGLQIFESEQPDLVICD--LRMPQIDGLELIRRIR 72 (394)
T ss_dssp ---CEEEEEEECSCHHHHHHHHHHHHHT------TEEEEECSSHHHHHHHHHHSCCSEEEEC--CCSSSSCTHHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHhhCCCCEEEEc--CCCCCCCHHHHHHHHH
Confidence 4566789999998887788888899887 8876432211111222333478988871 11222223 2345556
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+...++||+
T Consensus 73 ~~~~~~pii 81 (394)
T 3eq2_A 73 QTASETPII 81 (394)
T ss_dssp HTTCCCCEE
T ss_pred hhCCCCcEE
Confidence 555568887
|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=88.88 E-value=1.3 Score=32.30 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=46.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|||....+...+.+.|+.. |+.+........-.+.+....||.||+-=. .|...+ .+.+.+++...
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERR------GYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQP 78 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCC
Confidence 468999998877778888889887 887754432111122333446899888211 122222 24555666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
+.||+
T Consensus 79 ~~~ii 83 (184)
T 3rqi_A 79 DARIL 83 (184)
T ss_dssp TCEEE
T ss_pred CCCEE
Confidence 78988
|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=2.3 Score=28.33 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=44.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.++.. |..+..........+.+....+|.+|+-=. .+...+ .+.+.+++...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~ 74 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMN------GFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKI 74 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC------CcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCC
Confidence 368999998877777888888887 887654321111112223336787776211 122222 23455565556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (126)
T 1dbw_A 75 NIPSI 79 (126)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78988
|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A | Back alignment and structure |
|---|
Probab=88.59 E-value=0.81 Score=31.65 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=46.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
+.+|+|||....+...+.+.|+.. | +.+............+.. ..+|.||+--. .+...+ .+.+.+++
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~------g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDA------GRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHH------CSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhC------CCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHH
Confidence 578999998887788888999888 7 877664332111122222 46899988221 111111 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 92 ~~~~~~ii 99 (146)
T 4dad_A 92 LHPGLTCL 99 (146)
T ss_dssp HCTTCEEE
T ss_pred hCCCCcEE
Confidence 55678988
|
| >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=88.56 E-value=0.12 Score=39.63 Aligned_cols=44 Identities=11% Similarity=0.239 Sum_probs=32.8
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+|.||++||.+... ....+.+++++. .++++|. |-|-.+|+.+
T Consensus 65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 379999999975321 233467778774 5778988 9999999985
|
| >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A | Back alignment and structure |
|---|
Probab=88.26 E-value=1.4 Score=31.95 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=35.8
Q ss_pred CCCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhc--cCCCEEEECCCC
Q 037843 11 DKNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 11 ~~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~--~~~dgiil~GG~ 72 (203)
...+|+|+ ....+++..+++.+.+...+ .|+++++++.... +.+++.. .++|+||| |.|
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~--~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 65 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITK--TGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS 65 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHH--TTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHH--CCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence 45677777 33446677777666443211 2888888876545 5555432 25799999 544
|
| >3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.18 E-value=1.9 Score=33.07 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=46.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+...|+.. |+.+........-.+.+....+|.||+-=. .|...+ .+.+.+++...
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~ 94 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQ------GFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGI 94 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCC
Confidence 578999998877778888888887 888764422111122233347899998211 122222 23455666555
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..||+
T Consensus 95 ~~~ii 99 (250)
T 3r0j_A 95 DAPAL 99 (250)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78888
|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=88.00 E-value=0.68 Score=31.81 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=46.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHH-hhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCC-CCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGE-LELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAP-QESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~-~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~-~~~~-~~~~~i~~ 87 (203)
+.+|+|||....+...+.+.|+. . |+.+........-.+.+.. ..+|.||+--. .+ ...+ .+.+.+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~------~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIG------EYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRN 75 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHC------CCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcc------CccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHh
Confidence 57899999888778888888888 6 8887644321111122333 46899988211 11 1111 23555666
Q ss_pred --hCCCCcee
Q 037843 88 --LGPTMPLF 95 (203)
Q Consensus 88 --~~~~~Pil 95 (203)
...+.|++
T Consensus 76 ~~~~~~~~ii 85 (140)
T 3lua_A 76 NSRTANTPVI 85 (140)
T ss_dssp SGGGTTCCEE
T ss_pred CcccCCCCEE
Confidence 45678988
|
| >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=87.97 E-value=1.8 Score=29.55 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=44.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc-----cCCCEEEECCCCCCCCCcc-hHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR-----KKPRGVVISPGPGAPQESG-ISFR 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~-----~~~dgiil~GG~~~~~~~~-~~~~ 83 (203)
+.+|+|||....+...+.+.++.. |. .+........-.+.+.. ..+|.||+-=. .+...+ .+.+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~------~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~ 80 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMT------HRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELID 80 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTT------CCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhc------CCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHH
Confidence 568999998877777888888887 77 44433221111223333 46899988221 122222 2455
Q ss_pred HHHH----hCCCCcee
Q 037843 84 TVLE----LGPTMPLF 95 (203)
Q Consensus 84 ~i~~----~~~~~Pil 95 (203)
.+++ .....|++
T Consensus 81 ~l~~~~~~~~~~~~ii 96 (146)
T 3ilh_A 81 LFKQHFQPMKNKSIVC 96 (146)
T ss_dssp HHHHHCGGGTTTCEEE
T ss_pred HHHHhhhhccCCCeEE
Confidence 5666 34678887
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=87.68 E-value=0.97 Score=31.89 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=47.2
Q ss_pred ccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHH
Q 037843 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRT 84 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~ 84 (203)
+|++ ..||+|||-.......+.+.|+.. |+.+...-.+... .+.+....||.||+= -..|.-.| .+.+.
T Consensus 8 ~m~k-~~rILiVDD~~~~r~~l~~~L~~~------G~~~v~~a~~g~~al~~~~~~~~DlillD--~~MP~mdG~el~~~ 78 (134)
T 3to5_A 8 ILNK-NMKILIVDDFSTMRRIVKNLLRDL------GFNNTQEADDGLTALPMLKKGDFDFVVTD--WNMPGMQGIDLLKN 78 (134)
T ss_dssp -CCT-TCCEEEECSCHHHHHHHHHHHHHT------TCCCEEEESSHHHHHHHHHHHCCSEEEEE--SCCSSSCHHHHHHH
T ss_pred HhCC-CCEEEEEeCCHHHHHHHHHHHHHc------CCcEEEEECCHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHH
Confidence 4444 368999998777778888999998 8863322222111 222333478998881 11233333 24566
Q ss_pred HHHh--CCCCcee
Q 037843 85 VLEL--GPTMPLF 95 (203)
Q Consensus 85 i~~~--~~~~Pil 95 (203)
|++. ..++||+
T Consensus 79 ir~~~~~~~ipvI 91 (134)
T 3to5_A 79 IRADEELKHLPVL 91 (134)
T ss_dssp HHHSTTTTTCCEE
T ss_pred HHhCCCCCCCeEE
Confidence 6653 3679998
|
| >2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A | Back alignment and structure |
|---|
Probab=87.43 E-value=0.69 Score=31.00 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=42.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hccCCCEEEECCCCCCCCCcc-hHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KRKKPRGVVISPGPGAPQESG-ISFRTV 85 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~~~~dgiil~GG~~~~~~~~-~~~~~i 85 (203)
|+.+|+|+|........+.+.++.. |..+.... +..+. ....+|.||+-=. .+...+ .+.+.+
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~------g~~v~~~~----~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l 68 (127)
T 2jba_A 1 MARRILVVEDEAPIREMVCFVLEQN------GFQPVEAE----DYDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHL 68 (127)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEEC----SHHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHC------CceEEEeC----CHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHH
Confidence 3568999998877777888888887 88765432 22222 2236888887211 111112 234445
Q ss_pred HHhC--CCCcee
Q 037843 86 LELG--PTMPLF 95 (203)
Q Consensus 86 ~~~~--~~~Pil 95 (203)
++.. .+.|++
T Consensus 69 ~~~~~~~~~~ii 80 (127)
T 2jba_A 69 RRESMTRDIPVV 80 (127)
T ss_dssp HTSTTTTTSCEE
T ss_pred HhCcccCCCCEE
Confidence 5432 568888
|
| >1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=87.17 E-value=1.3 Score=29.39 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|....+...+.+.++.. |..+........-...+....+|.+|+-=. .+...+ .+.+.+++ ..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~ 72 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQE------GYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RS 72 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TC
T ss_pred CcEEEEEECCHHHHHHHHHHHHHC------CCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cC
Confidence 357999998877778888888877 887754422111112223336898887221 122222 23444444 45
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (122)
T 1zgz_A 73 TVGII 77 (122)
T ss_dssp CCEEE
T ss_pred CCCEE
Confidence 67887
|
| >1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B | Back alignment and structure |
|---|
Probab=87.16 E-value=1.2 Score=32.87 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=39.9
Q ss_pred CCcEEEEeCC-------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc---c-CCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDNY-------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR---K-KPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~~-------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~---~-~~dgiil~GG~~~~~ 76 (203)
+++|.||--+ +++...+.+.|++. |+.+..+. .|+.. .+.+.. . ++|.||.+||.|- .
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~------G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~-~ 82 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEA------GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL-T 82 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSS-S
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHC------CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC-C
Confidence 4678888433 45667788899988 88765321 23211 122221 1 3899999999763 3
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 83 ~~D~t~ea~~~ 93 (172)
T 1mkz_A 83 EGDQAPEALLP 93 (172)
T ss_dssp TTCCHHHHHGG
T ss_pred CCCCHHHHHHH
Confidence 34444444444
|
| >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A | Back alignment and structure |
|---|
Probab=87.08 E-value=2.5 Score=31.66 Aligned_cols=76 Identities=12% Similarity=0.241 Sum_probs=46.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.++|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~ 78 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLS------GFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDN 78 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCC
Confidence 368999998887788888888887 887754322111122233347899988321 122222 23455565556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 79 ~~~ii 83 (233)
T 1ys7_A 79 DVPVC 83 (233)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78888
|
| >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=1.1 Score=29.53 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=42.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
|.+|+|+|....+...+.+.++.. |..+............+....+|.+++--. .+...+ .+.+.+++. .
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~ 71 (120)
T 2a9o_A 1 MKKILIVDDEKPISDIIKFNMTKE------GYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-S 71 (120)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-C
T ss_pred CceEEEEcCCHHHHHHHHHHHHhc------CcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-C
Confidence 458999998877777788888887 887754322111122233336898887321 122222 234445543 4
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 72 ~~~ii 76 (120)
T 2a9o_A 72 SVPIL 76 (120)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 68887
|
| >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A | Back alignment and structure |
|---|
Probab=86.84 E-value=3.8 Score=26.98 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=43.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.++|+|+|........+.+.++.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++. .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~ 73 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAE------GYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-A 73 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-C
T ss_pred CceEEEEeCCHHHHHHHHHHHhhC------CcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-C
Confidence 368999998877777788888877 887654322111122233346898887321 122222 234445544 5
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 74 ~~~ii 78 (123)
T 1xhf_A 74 NVALM 78 (123)
T ss_dssp CCEEE
T ss_pred CCcEE
Confidence 68887
|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=3.4 Score=28.56 Aligned_cols=72 Identities=8% Similarity=-0.007 Sum_probs=40.8
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC-CCCcc--hHHHHHHHh---CCCC
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA-PQESG--ISFRTVLEL---GPTM 92 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~-~~~~~--~~~~~i~~~---~~~~ 92 (203)
....+++..+++.+.+...+ .|+++++++..+.+.+++. ++|.||| |.|-. -.... .+..++..+ -.++
T Consensus 6 ~S~tGnT~~iA~~ia~~l~~--~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k 80 (138)
T 5nul_A 6 WSGTGNTEKMAELIAKGIIE--SGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGK 80 (138)
T ss_dssp ECSSSHHHHHHHHHHHHHHH--TTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTC
T ss_pred ECCCchHHHHHHHHHHHHHH--CCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCC
Confidence 44456777777766543211 2788888776555666766 5799998 44321 11112 344555553 2567
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
++.
T Consensus 81 ~~~ 83 (138)
T 5nul_A 81 KVA 83 (138)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A | Back alignment and structure |
|---|
Probab=86.71 E-value=2.8 Score=31.46 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=41.2
Q ss_pred CCCcEEEEeC---------CchHHHHHHHHHHH---hhhhhcCCceEEE---EeCCccc-HHHHhc----cCCCEEEECC
Q 037843 11 DKNPIVVIDN---------YDSFTYNLCQYMGE---LELELSQGYHFEV---YRNDELT-VAELKR----KKPRGVVISP 70 (203)
Q Consensus 11 ~~~~i~iid~---------~~~~~~~l~~~l~~---~~~~~~~g~~~~v---~~~~~~~-~~~l~~----~~~dgiil~G 70 (203)
.+++|.||-- .+++...+.+.|++ . |+.+.. ++.+... .+.+.. .++|.||.+|
T Consensus 13 ~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~------G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLL------GGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTT------CCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcC------CcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcC
Confidence 3578888843 34566778888887 6 776643 3322111 122221 1589999999
Q ss_pred CCCCCCCcchHHHHHHHh
Q 037843 71 GPGAPQESGISFRTVLEL 88 (203)
Q Consensus 71 G~~~~~~~~~~~~~i~~~ 88 (203)
|.|- ...+...+.+.++
T Consensus 87 Gtg~-g~~D~t~eal~~~ 103 (189)
T 1jlj_A 87 GTGF-APRDVTPEATKEV 103 (189)
T ss_dssp CCSS-STTCCHHHHHHHH
T ss_pred CCCC-CCcccHHHHHHHH
Confidence 9763 4444444555553
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.65 E-value=2.5 Score=29.25 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
.+.+|+|+|....+...+.+.|+.. |....+...... -.+.+....+|.||+--.. +...+ .+.+.+++
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~ 85 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLS------GSVNVVGEADDGAAALELIKAHLPDVALLDYRM--PGMDGAQVAAAVRS 85 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHH------SSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhC------CCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHh
Confidence 4678999998887788888999888 744333222111 1222333478999983221 11122 24555666
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 86 ~~~~~~ii 93 (152)
T 3eul_A 86 YELPTRVL 93 (152)
T ss_dssp TTCSCEEE
T ss_pred cCCCCeEE
Confidence 55678888
|
| >3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=86.43 E-value=2 Score=31.60 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCcEEEEeCC--------------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHh----ccCCCEEEEC
Q 037843 12 KNPIVVIDNY--------------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELK----RKKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~--------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~----~~~~dgiil~ 69 (203)
+.+|+||--. |.+...+.++|+++ |+++.... .|+.. .+.+. ..++|.||.+
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~------G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN------GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 4678888433 45566788899998 98875322 23211 11121 2368999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.|- .+.+...+.+.+
T Consensus 89 GG~g~-~~~D~t~ea~~~ 105 (178)
T 3iwt_A 89 GGTGY-SPTDITVETIRK 105 (178)
T ss_dssp SCCSS-STTCCHHHHHGG
T ss_pred CCccc-CCCCchHHHHHH
Confidence 99763 344444444444
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=86.25 E-value=0.34 Score=33.33 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=43.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC--Ccc-hHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ--ESG-ISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~--~~~-~~~~~ 84 (203)
+.+|+|+|....+...+.+.|+.. |+.+.... +.++.. ...+|.||+--. .+. ..+ .+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~----~~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~ 73 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPL------DVTIQCFA----SAESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLET 73 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTS------SSEEEEES----SHHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CcEEEEeC----CHHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHH
Confidence 578999998877777888888887 88776432 233322 235788887211 121 112 23455
Q ss_pred HHHhCCCCcee
Q 037843 85 VLELGPTMPLF 95 (203)
Q Consensus 85 i~~~~~~~Pil 95 (203)
+++...+.|++
T Consensus 74 l~~~~~~~~ii 84 (136)
T 3kto_A 74 LVKRGFHLPTI 84 (136)
T ss_dssp HHHTTCCCCEE
T ss_pred HHhCCCCCCEE
Confidence 56555678988
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=86.12 E-value=2.5 Score=33.83 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=34.5
Q ss_pred CCCCcEEEEeCCchH--------HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 10 NDKNPIVVIDNYDSF--------TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 10 ~~~~~i~iid~~~~~--------~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+|+++|+||--+.|- ...+.+++++. |+++..+...+.....+...++|.++.
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~------g~~v~~i~~~~~~~~~l~~~~~D~v~~ 71 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDA------GIDAHPFDPAERPLSALKDEGFVRAFN 71 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT------TCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHC------CCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence 456789999765432 24566788887 999988864332233444446898875
|
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* | Back alignment and structure |
|---|
Probab=86.01 E-value=4.7 Score=29.60 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=33.4
Q ss_pred CCcEEEEeC-CchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-------------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDN-YDSFTYNLCQYMGELELELSQGYHFEVYRNDE-------------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-------------------~~~~~l~~~~~dgiil~GG 71 (203)
|++|+||-. -.+++..+++++.+...+ .|++++++...+ ...+++. ++|+||| |.
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gs 79 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQ--GGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GS 79 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EE
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhh--CCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-Ec
Confidence 457888743 245677777666543211 278888776433 1244555 5799999 55
Q ss_pred C
Q 037843 72 P 72 (203)
Q Consensus 72 ~ 72 (203)
|
T Consensus 80 P 80 (200)
T 2a5l_A 80 P 80 (200)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A | Back alignment and structure |
|---|
Probab=86.00 E-value=2 Score=31.71 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=44.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.++|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+-= ..|...+ .+.+.+++...
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSA------GFEVETFDCASTFLEHRRPEQHGCLVLDM--RMPGMSGIELQEQLTAISD 75 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHCCTTSCEEEEEES--CCSSSCHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC------CceEEEcCCHHHHHHhhhccCCCEEEEeC--CCCCCCHHHHHHHHHhcCC
Confidence 468999998887778888888877 88876432110011112223578887721 1122222 23455665556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
+.|++
T Consensus 76 ~~~ii 80 (208)
T 1yio_A 76 GIPIV 80 (208)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78988
|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=85.92 E-value=2.8 Score=29.02 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHh---------ccCCCEEEECCCCCCCCCcc-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELK---------RKKPRGVVISPGPGAPQESG- 79 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~---------~~~~dgiil~GG~~~~~~~~- 79 (203)
+.+|+|||........+.+.|+.. |. .+..........+.+. ...+|.||+-=. .+...+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~------g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~ 75 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRA------GVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGI 75 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHT------TCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhC------CCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHH
Confidence 478999998877788888999888 77 4444322111122231 236888888221 122222
Q ss_pred hHHHHHHH--hCCCCcee
Q 037843 80 ISFRTVLE--LGPTMPLF 95 (203)
Q Consensus 80 ~~~~~i~~--~~~~~Pil 95 (203)
.+.+.+++ ...+.|++
T Consensus 76 ~~~~~lr~~~~~~~~pii 93 (152)
T 3heb_A 76 DILKLVKENPHTRRSPVV 93 (152)
T ss_dssp HHHHHHHHSTTTTTSCEE
T ss_pred HHHHHHHhcccccCCCEE
Confidence 24556666 34678988
|
| >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} | Back alignment and structure |
|---|
Probab=85.46 E-value=1.7 Score=29.66 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERG------GYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPA 74 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTT
T ss_pred cceEEEEeCCHHHHHHHHHHHHHc------CceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcc
Confidence 468999998877778888888887 887664321111122233346898887221 122222 234555553
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
...+||+
T Consensus 75 ~~~~~ii 81 (138)
T 3c3m_A 75 TRDIPVL 81 (138)
T ss_dssp TTTSCEE
T ss_pred cCCCCEE
Confidence 3468988
|
| >3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.42 E-value=2.8 Score=29.72 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=41.8
Q ss_pred ccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE-EeCCc-ccHHHHhccCCCEEEECCCCCCCCCcc-hHHH
Q 037843 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV-YRNDE-LTVAELKRKKPRGVVISPGPGAPQESG-ISFR 83 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v-~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~ 83 (203)
=|...+.+|+|+|........+.+.|+.. |....+ .-.+. ...+.+....+|.||+--. .+...+ .+.+
T Consensus 20 ~M~~~~~~ILivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~l~~ 91 (164)
T 3t8y_A 20 HMTDRVIRVLVVDDSAFMRMVLKDIIDSQ------PDMKVVGFAKDGLEAVEKAIELKPDVITMDIE--MPNLNGIEALK 91 (164)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHH
T ss_pred ccccCccEEEEEcCCHHHHHHHHHHHhcC------CCeEEEEecCCHHHHHHHhccCCCCEEEEeCC--CCCCCHHHHHH
Confidence 34445678999998877777788888776 432222 21111 1122233347899988321 111222 2345
Q ss_pred HHHHhCCCCcee
Q 037843 84 TVLELGPTMPLF 95 (203)
Q Consensus 84 ~i~~~~~~~Pil 95 (203)
.+++... .|++
T Consensus 92 ~lr~~~~-~~ii 102 (164)
T 3t8y_A 92 LIMKKAP-TRVI 102 (164)
T ss_dssp HHHHHSC-CEEE
T ss_pred HHHhcCC-ceEE
Confidence 5555444 7777
|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A | Back alignment and structure |
|---|
Probab=85.36 E-value=4.2 Score=31.35 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|....+...+.+.|+.. |+.+........-.+.+....+|.||+-=. .+...+ .+.+.|++...
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~l~~~~~dlvl~D~~--mp~~~G~~l~~~ir~~~~ 200 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSL------GYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGL 200 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHH------TSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCC
Confidence 467999998877778888899888 998765533211223333446898887211 122222 24555666545
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..||+
T Consensus 201 ~~piI 205 (254)
T 2ayx_A 201 TLPVI 205 (254)
T ss_dssp CSCEE
T ss_pred CCcEE
Confidence 78998
|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=85.28 E-value=3.3 Score=28.17 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEE
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVI 68 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil 68 (203)
+..+.+|+|+|....+...+.+.|+... |+.+...-.+.. ....+....+|.||+
T Consensus 6 ~~~~~~iLivdd~~~~~~~l~~~L~~~~-----~~~~v~~~~~~~~al~~l~~~~~dlvi~ 61 (143)
T 2qv0_A 6 SGEKMKVIIVEDEFLAQQELSWLINTHS-----QMEIVGSFDDGLDVLKFLQHNKVDAIFL 61 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHS-----CCEEEEEESCHHHHHHHHHHCCCSEEEE
T ss_pred CCCceEEEEEcCCHHHHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 3446789999988777778888887751 555322211111 112233346899988
|
| >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=85.21 E-value=3.5 Score=32.76 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=39.6
Q ss_pred cCCCCCcEEEEeCCch-----HHHHHHHHHHHhhhhhcCCceEEEEeCC----------cccHHHHhccCCCEEEECCCC
Q 037843 8 SKNDKNPIVVIDNYDS-----FTYNLCQYMGELELELSQGYHFEVYRND----------ELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~-----~~~~l~~~l~~~~~~~~~g~~~~v~~~~----------~~~~~~l~~~~~dgiil~GG~ 72 (203)
|+..|++|+||-+..+ ....+.+++++. |+++.+.... ....++.. .++|.||..||.
T Consensus 1 m~~~mkki~ii~np~~~~~~~~~~~i~~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GGD 73 (292)
T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQ------GYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGGD 73 (292)
T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHT------TCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSCH
T ss_pred CCCcCcEEEEEEcCCCHHHHHHHHHHHHHHHHC------CCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcCc
Confidence 3444678988855321 234466677777 8887664310 01122222 257999999996
Q ss_pred CCCCCcchHHHHHHHh-CCCCcee
Q 037843 73 GAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
|. +.+.++.+ ..++|+|
T Consensus 74 GT------~l~a~~~~~~~~~P~l 91 (292)
T 2an1_A 74 GN------MLGAARTLARYDINVI 91 (292)
T ss_dssp HH------HHHHHHHHTTSSCEEE
T ss_pred HH------HHHHHHHhhcCCCCEE
Confidence 53 33444443 3356766
|
| >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A | Back alignment and structure |
|---|
Probab=84.93 E-value=1.4 Score=29.07 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
|.+|+|+|....+...+.+.++.. |..+............+....+|.+++--. .+...+ .+.+.+++ ..
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~-~~ 71 (121)
T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALEGD------GMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WS 71 (121)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TC
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcC------CCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHh-CC
Confidence 357999998877777788888877 887654322111122222336898887211 111122 22344443 34
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 72 ~~~ii 76 (121)
T 1zh2_A 72 AVPVI 76 (121)
T ss_dssp CCCEE
T ss_pred CCcEE
Confidence 67887
|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=84.55 E-value=2 Score=29.32 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=45.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|........+.+.++.. |+.+........-.+.+....+|.||+-= ..+...+ .+.+.+++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~lr~~~~ 75 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGA------GYEVRRAASGEEALQQIYKNLPDALICDV--LLPGIDGYTLCKRVRQHPL 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEES--CCSSSCHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHcCCC
Confidence 367999998877778888888887 88776442211112223334789988821 1222222 234555552
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
...+|++
T Consensus 76 ~~~~pii 82 (136)
T 3t6k_A 76 TKTLPIL 82 (136)
T ss_dssp GTTCCEE
T ss_pred cCCccEE
Confidence 3578988
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* | Back alignment and structure |
|---|
Probab=84.38 E-value=1.8 Score=30.47 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|++|+|+ ....+++..+++.+.+... ..|+++++++..+.+.+++.. ++|.|||
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~--~~g~~v~~~~~~~~~~~~l~~-~~d~ii~ 55 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIA--AGGHEVTLLNAADASAENLAD-GYDAVLF 55 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHH--TTTCEEEEEETTTBCCTTTTT-TCSEEEE
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHH--hCCCeEEEEehhhCCHhHhcc-cCCEEEE
Confidence 3567666 4455677777776655321 227888888765444445441 4799888
|
| >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.37 E-value=4.4 Score=27.27 Aligned_cols=76 Identities=9% Similarity=0.228 Sum_probs=41.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|+|....+...+.+.++.. | ......-.+... .+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~------~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~--lp~~~g~~~~~~l~~~ 74 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLH------GDFEILADTDNGLDAMKLIEEYNPNVVILDIE--MPGMTGLEVLAEIRKK 74 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHH------SSEEEEEEESCHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHT
T ss_pred ceEEEEECCCHHHHHHHHHHHhhC------CCcEEEEEcCCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHHH
Confidence 357999998877777788888877 5 222211111111 12223336898888211 122222 234556654
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 75 ~~~~~ii 81 (133)
T 3b2n_A 75 HLNIKVI 81 (133)
T ss_dssp TCSCEEE
T ss_pred CCCCcEE
Confidence 4578988
|
| >3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A | Back alignment and structure |
|---|
Probab=83.79 E-value=3.9 Score=30.35 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=46.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhc-------------cCCCEEEECCCCCCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKR-------------KKPRGVVISPGPGAPQE 77 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~-------------~~~dgiil~GG~~~~~~ 77 (203)
..+|+|||....+...+.+.|+.. |+ .+........-.+.+.. ..||.||+-=. .+..
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~------g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~ 132 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKM------GVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEM 132 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT------TCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCC
Confidence 468999998887788888999988 87 56554321111222222 26899888211 1222
Q ss_pred cc-hHHHHHHHh----CCCCcee-ehh
Q 037843 78 SG-ISFRTVLEL----GPTMPLF-CMG 98 (203)
Q Consensus 78 ~~-~~~~~i~~~----~~~~Pil-ClG 98 (203)
.+ .+.+.|++. ...+||+ +-|
T Consensus 133 ~G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 133 DGYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CHHHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 22 234555553 4678998 544
|
| >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=83.61 E-value=5.6 Score=27.41 Aligned_cols=77 Identities=8% Similarity=0.049 Sum_probs=42.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|+|....+...+.+.|+... |. .+............+.. ..+|.||+--.. +...+ .+.+.+++.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~-----g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~ 75 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAF-----SGMRVEGAETVSDALAFLEADNTVDLILLDVNL--PDAEAIDGLVRLKRF 75 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHC-----TTEEEEEESSHHHHHHHHHTTCCCSEEEECC--------CHHHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCC-----CceEEEEecCHHHHHHHHhccCCCCEEEEeCCC--CCCchHHHHHHHHHh
Confidence 3579999988777778888887751 45 33333221111233334 468999883221 11122 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 76 ~~~~~ii 82 (154)
T 2qsj_A 76 DPSNAVA 82 (154)
T ss_dssp CTTSEEE
T ss_pred CCCCeEE
Confidence 5678988
|
| >3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} | Back alignment and structure |
|---|
Probab=83.44 E-value=2.7 Score=30.32 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=33.2
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
+|+|+ ....+++..+++.+.+...+ .|+.+++++....+.+++.. .++|+||| |.|
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~--~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 60 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVK--TGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTP 60 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHH--TTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHh--CCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcC
Confidence 45555 34446677777666443211 27888888765455555431 25799999 544
|
| >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=83.41 E-value=1.6 Score=30.16 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=42.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|........+.+.++.. |..+........-.+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKA------GHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--------CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHc------CCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchh
Confidence 468999998777777788888887 887765432111122233347899988211 122222 234555532
Q ss_pred --CCCCcee
Q 037843 89 --GPTMPLF 95 (203)
Q Consensus 89 --~~~~Pil 95 (203)
....|++
T Consensus 86 ~~~~~~pii 94 (143)
T 3m6m_D 86 SGMRYTPVV 94 (143)
T ss_dssp TTCCCCCEE
T ss_pred ccCCCCeEE
Confidence 2457888
|
| >2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} | Back alignment and structure |
|---|
Probab=83.38 E-value=1.8 Score=32.49 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
|+.+|+|+|....+...+.+.|+.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~- 73 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKE------GFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGMSGTDVCKQLRAR- 73 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHH-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHcC-
Confidence 4578999998887778888888887 888764322111122233336899888321 122222 234445554
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (230)
T 2oqr_A 74 SSVPVI 79 (230)
T ss_dssp CSCSEE
T ss_pred CCCCEE
Confidence 468888
|
| >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=83.16 E-value=5.9 Score=29.11 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=34.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--------------------cHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--------------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--------------------~~~~l~~~~~dgiil~GG 71 (203)
|++|+||-.-.+++..+++.+.+...+ .|++++++...+. ..+++. ++|+||| |.
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gs 78 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEE--AGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GS 78 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHH--HSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EE
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHh--CCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-EC
Confidence 357888854466777777665443211 1788887754322 144555 5799999 55
Q ss_pred CC
Q 037843 72 PG 73 (203)
Q Consensus 72 ~~ 73 (203)
|-
T Consensus 79 P~ 80 (199)
T 2zki_A 79 PT 80 (199)
T ss_dssp EC
T ss_pred Cc
Confidence 53
|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} | Back alignment and structure |
|---|
Probab=83.10 E-value=4.6 Score=27.88 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=42.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccC-CCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKK-PRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~-~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|||....+...+.+.|+ . |+.+..........+.+.... ||.||+--.- +...+ .+.+.+++..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~-~------~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~ 74 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS-F------DFEVTTCESGPEALACIKKSDPFSVIMVDMRM--PGMEGTEVIQKARLIS 74 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT-T------TSEEEEESSHHHHHHHHHHSCCCSEEEEESCC--SSSCHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-c------CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC--CCCcHHHHHHHHHhcC
Confidence 5789999987766666766663 3 777665432111122233334 5998883221 11222 2455566656
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 75 ~~~~ii 80 (151)
T 3kcn_A 75 PNSVYL 80 (151)
T ss_dssp SSCEEE
T ss_pred CCcEEE
Confidence 678988
|
| >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A | Back alignment and structure |
|---|
Probab=83.10 E-value=2.2 Score=28.20 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=43.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--C
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL--G 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~--~ 89 (203)
++|+|+|....+...+.+.++.. |+.+............+....+|.||+-=. .+...+ .+.+.+++. .
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~ 73 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQ------GYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDL 73 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHc------CcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccc
Confidence 57999998877778888888887 887654321111112222336898887211 122222 234555553 2
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
..+|++
T Consensus 74 ~~~~ii 79 (124)
T 1mb3_A 74 AHIPVV 79 (124)
T ss_dssp TTSCEE
T ss_pred cCCcEE
Confidence 468888
|
| >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=82.69 E-value=1 Score=30.44 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=43.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh---ccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK---RKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~---~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
+.+|+|||........+.+.|+.. +..+.... +.++.. ...+|.||+--. .+...+ .+.+.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~----~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~ 70 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPI------FGNVEAFQ----HPRAFLTLSLNKQDIIILDLM--MPDMDGIEVIRHLAE 70 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT------CSCEEEES----CHHHHTTSCCCTTEEEEEECC--TTTTHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhh------cceeeeec----CHHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHh
Confidence 478999998877777788888776 76665542 233322 123788887321 111122 23455666
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 71 ~~~~~~ii 78 (135)
T 3eqz_A 71 HKSPASLI 78 (135)
T ss_dssp TTCCCEEE
T ss_pred CCCCCCEE
Confidence 55678888
|
| >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=82.66 E-value=1.9 Score=29.44 Aligned_cols=51 Identities=6% Similarity=0.116 Sum_probs=33.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+.+|+|+|....+...+...++.. |..+..........+.+....+|.||+
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~al~~l~~~~~dlvll 60 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKC------TNDITVVTNGLQALQAYQNRQFDVIIM 60 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTT------CSEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHHc------CCceEEECCHHHHHHHHhcCCCCEEEE
Confidence 458999998877777788888777 877765432111122233346898888
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=82.19 E-value=5.3 Score=31.35 Aligned_cols=53 Identities=21% Similarity=0.083 Sum_probs=33.7
Q ss_pred CCCcEEEEeCCch--------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 11 DKNPIVVIDNYDS--------FTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 11 ~~~~i~iid~~~~--------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
|+++|+||..+.+ -...+.+++++. |+++.++..++.....+...++|.++..
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~------G~~v~~~~~~~~~~~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREG------GIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT------TCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHC------CCeEEEEecCchHHHHhhccCCCEEEEc
Confidence 3578999976653 234577788888 9999887654332233333367887754
|
| >1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A | Back alignment and structure |
|---|
Probab=82.19 E-value=2.7 Score=31.73 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=38.8
Q ss_pred CCcEEEEe---------CCchHHHHHHHHHHHhhhhhcCCce-----EEEEeCCcccH-HHHhc----cCCCEEEECCCC
Q 037843 12 KNPIVVID---------NYDSFTYNLCQYMGELELELSQGYH-----FEVYRNDELTV-AELKR----KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid---------~~~~~~~~l~~~l~~~~~~~~~g~~-----~~v~~~~~~~~-~~l~~----~~~dgiil~GG~ 72 (203)
+++|.||- ..+++...+.+++++. |+. ..+++.+.... +.+.. .++|.||.+||.
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~------G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSA------LTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHH------BCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHc------CCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 46777773 3456677888999988 765 23444331111 22221 158999999997
Q ss_pred CCCCCcchHHHHHHH
Q 037843 73 GAPQESGISFRTVLE 87 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~ 87 (203)
|- ...+...+.+.+
T Consensus 77 g~-g~~D~T~ea~~~ 90 (195)
T 1di6_A 77 GP-ARRDVTPDATLA 90 (195)
T ss_dssp SS-STTCCHHHHHHH
T ss_pred CC-CCCccHHHHHHH
Confidence 63 333334455554
|
| >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.43 E-value=3.8 Score=30.46 Aligned_cols=70 Identities=9% Similarity=0.085 Sum_probs=42.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|+|....+...+...|+.. |+.+..........+.+....+|.||+ ++ ..+ .+.+.+++.....
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvil-p~-----~~g~~~~~~lr~~~~~~ 69 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVK------GFMADVTESLEDGEYLMDIRNYDLVMV-SD-----KNALSFVSRIKEKHSSI 69 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGG------TCCEEEESSHHHHHHHHTTSCCSEEEE-CC-----TTHHHHHHHHHHHCTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHHC------CcEEEEECCHHHHHHHHhcCCCCEEEe-CC-----CCHHHHHHHHHhCCCCC
Confidence 6999998877777888888877 888764322111122233346898882 22 122 2345555552278
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 70 ~ii 72 (223)
T 2hqr_A 70 VVL 72 (223)
T ss_dssp EEE
T ss_pred cEE
Confidence 988
|
| >3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} | Back alignment and structure |
|---|
Probab=81.12 E-value=3.2 Score=28.44 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
||.+|+|+|....+...+.+.++.. ..|..+...-.+... ...+....+|.||+--. .+...+ .+.+.+++.
T Consensus 1 m~~~ILivdd~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~l~~~l~~~ 74 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWK----ALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKL 74 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGG----GSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHH
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHc----cCCcEEeeecccHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhh
Confidence 3568999998766666666666532 015654412121111 12233346898887221 122222 234555655
Q ss_pred CCCCcee-ehh
Q 037843 89 GPTMPLF-CMG 98 (203)
Q Consensus 89 ~~~~Pil-ClG 98 (203)
....|++ +-+
T Consensus 75 ~~~~~ii~ls~ 85 (141)
T 3cu5_A 75 YPDCSVIFMSG 85 (141)
T ss_dssp CTTCEEEEECC
T ss_pred CCCCcEEEEeC
Confidence 5678888 533
|
| >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=81.05 E-value=2.9 Score=28.48 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=43.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.|+.. |..+..........+.+....+|.||+-=. .+...+ .+.+.+++..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~- 74 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEK------GISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT- 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-
Confidence 468999998877777888888877 887654322111122233346898887211 111122 2334444433
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (136)
T 2qzj_A 75 TCPIV 79 (136)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 68887
|
| >3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.79 E-value=4.3 Score=31.15 Aligned_cols=59 Identities=12% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCCCcEEEEeCCc-------hHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccH----HHHhccCCCEEEECCCCC
Q 037843 10 NDKNPIVVIDNYD-------SFTYNLCQYMGELELELSQGYHFEVYRNDE-LTV----AELKRKKPRGVVISPGPG 73 (203)
Q Consensus 10 ~~~~~i~iid~~~-------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~----~~l~~~~~dgiil~GG~~ 73 (203)
+.|++|+||.... ++...+.+.+.+...+ .|.+++++..++ .+. +.+. ..|+||+ +.|.
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~--~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~-~~P~ 93 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE--SGHQVKITTVDQGYDIESEIENYL--WADTIIY-QMPA 93 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH--TTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEE-EEEC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh--CCCEEEEEECCCccCHHHHHHHHH--hCCEEEE-ECCh
Confidence 3467899996543 5666666655443221 288888776432 222 2333 5799999 4443
|
| >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A | Back alignment and structure |
|---|
Probab=80.27 E-value=2.5 Score=28.16 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~- 88 (203)
+.+|+|+|........+.+.++.. |. .+..........+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~------g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~ 77 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQL------GFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANP 77 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTT------TCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCT
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHC------CCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCc
Confidence 578999998877777788888877 77 4433211111122233346898887211 122222 223444432
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
....|++
T Consensus 78 ~~~~~~ii 85 (129)
T 1p6q_A 78 ATKKAAFI 85 (129)
T ss_dssp TSTTCEEE
T ss_pred cccCCCEE
Confidence 2467887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 203 | ||||
| d1qdlb_ | 195 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 4e-35 | |
| d1i7qb_ | 192 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 4e-29 | |
| d1wl8a1 | 188 | c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA | 2e-23 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 4e-23 | |
| d1gpma2 | 205 | c.23.16.1 (A:3-207) GMP synthetase {Escherichia co | 6e-18 | |
| d1a9xb2 | 228 | c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe | 1e-16 | |
| d1l9xa_ | 288 | c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho | 1e-10 | |
| d1o1ya_ | 230 | c.23.16.1 (A:) Hypothetical protein TM1158 {Thermo | 7e-07 | |
| d2nv0a1 | 195 | c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bac | 0.001 | |
| d1k9vf_ | 200 | c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i | 0.002 |
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 120 bits (302), Expect = 4e-35
Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG- 73
++IDNYDSF YN+ Q +GEL G + V RNDE+++ ++R P ++ISPGPG
Sbjct: 4 TLIIDNYDSFVYNIAQIVGEL------GSYPIVIRNDEISIKGIERIDPDRLIISPGPGT 57
Query: 74 --APQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLL-VSCMGKALVYYNEKE 130
++ G+S + LG P+ + L + GK
Sbjct: 58 PEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNN 117
Query: 131 EADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQF 190
L G++ F A RYH LV+++ + ED IMA H++Y ++GVQF
Sbjct: 118 SPLSLYYGIAKEFKATRYHSLVVDEVHR--PLIVDAISAEDNEIMAIHHEEYP-IYGVQF 174
Query: 191 HPESILTSEGKT 202
HPES+ TS G
Sbjct: 175 HPESVGTSLGYK 186
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Score = 104 bits (261), Expect = 4e-29
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKRKKPRGVVISPG 71
I+++DN DSFTYNL + G+ +YRN E+ + L+ + +++SPG
Sbjct: 3 ILLLDNVDSFTYNLVDQLRAS------GHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPG 56
Query: 72 PGAPQESGISFRTVLELGPTMPLFCMGLK--CIGEALEGRLYVLLLVSCMGKALVYYNEK 129
PG P E+G + L +P+ + L I EA G++ +
Sbjct: 57 PGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVG----QAGEILHGKASAIA 112
Query: 130 EEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQ 189
+ +G+ AG++NP RYH ++MA R + + + G Q
Sbjct: 113 HDGEGMFAGMANPLPVARYH----SLVGSNIPADLTVNARFGEMVMAVRDDR-RRVCGFQ 167
Query: 190 FHPESILTSEGKT 202
FHPESILT+ G
Sbjct: 168 FHPESILTTHGAR 180
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 89.6 bits (221), Expect = 4e-23
Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 13/187 (6%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
I V+DN +T+ + + EL G ++ ND + + G+V+S G
Sbjct: 4 IYVVDNGGQWTHREWRVLREL------GVDTKIVPND---IDSSELDGLDGLVLSGGAPN 54
Query: 75 PQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADG 134
E +V + +G+ + + ++ + + ++
Sbjct: 55 IDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSEN 114
Query: 135 LLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPES 194
+ GL + T H I D+ + A + + HK + ++ QFHPE
Sbjct: 115 IFGGLPSEITVWENHNDEIINL---PDDFTLAASSATCQVQGFYHKT-RPIYATQFHPEV 170
Query: 195 ILTSEGK 201
T G+
Sbjct: 171 EHTQYGR 177
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Score = 76.1 bits (186), Expect = 6e-18
Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 9/193 (4%)
Query: 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70
K+ I+++D +T + + + EL G + E++ D T A+++ P G+++S
Sbjct: 4 HKHRILILDFGSQYTQLVARRVREL------GVYCELWAWDV-TEAQIRDFNPSGIILSG 56
Query: 71 GPGAPQESGISFRTVLELGPTMPLFCMGLK--CIGEALEGRLYVLLLVSCMGKALVYYNE 128
GP + E +P+F + + L G + + N+
Sbjct: 57 GPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVND 116
Query: 129 KEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGV 188
G+ L+ + +T + + A + K +GV
Sbjct: 117 SALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGV 176
Query: 189 QFHPESILTSEGK 201
QFHPE T +G
Sbjct: 177 QFHPEVTHTRQGM 189
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 73.3 bits (179), Expect = 1e-16
Identities = 28/205 (13%), Positives = 67/205 (32%), Gaps = 25/205 (12%)
Query: 1 GNEVLKLSKNDKNP--IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL 58
+ + K D+ P +V D N+ + + + +G + + ++
Sbjct: 26 TGGLPQAKKEDELPFHVVAYDF--GAKRNILRML------VDRGCRLTIVPAQT-SAEDV 76
Query: 59 KRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLL 115
+ P G+ +S GPG P + + + L +P+F C+G + + A + +
Sbjct: 77 LKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKF 136
Query: 116 VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIM 175
G + ++ + HG +++ + ++ DG +
Sbjct: 137 G-HHGGNHPVKDVEKN---------VVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQ 186
Query: 176 AARHKKYKHLHGVQFHPESILTSEG 200
Q +PE+
Sbjct: 187 GIHRTDKP-AFSFQGNPEASPGPHD 210
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 1e-10
Identities = 29/184 (15%), Positives = 51/184 (27%), Gaps = 29/184 (15%)
Query: 42 GYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL----------GPT 91
G R D K ++ PG + G
Sbjct: 38 GARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDY 97
Query: 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNE--------KEEADGLLAGLSN 141
P++ C+G + + + G + + + + + LL L+
Sbjct: 98 FPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAV 157
Query: 142 PFTAGRYHGLVIEKDSFRSDE-----LEVTAWTEDGL---IMAARHKKYKHLHGVQFHPE 193
+H + +F +E V DG I KY ++GVQ+HPE
Sbjct: 158 EPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPE 216
Query: 194 SILT 197
Sbjct: 217 KAPY 220
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Score = 45.8 bits (107), Expect = 7e-07
Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 13/160 (8%)
Query: 40 SQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLFCMGL 99
+ + F+ + E ++ VV+ G E E + +
Sbjct: 26 EKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEI 85
Query: 100 KCIGEALEGRLYVLLLVSCMGKALV------YYNEKEEADGLLAGLSNPFTAGRYHGLVI 153
+G L ++ +L + + + Y+ EK + + ++HG
Sbjct: 86 PFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFPDRLRVFQWHGDTF 145
Query: 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193
+ +E Y G+QFH E
Sbjct: 146 DLPRR----ATRVFTSEKYENQ---GFVYGKAVGLQFHIE 178
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Score = 36.0 bits (82), Expect = 0.001
Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 23/162 (14%)
Query: 42 GYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF------ 95
G V + E + + G+++ G I +E
Sbjct: 24 GAAGLVVKRPE------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFG 77
Query: 96 -CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK---EEADGLLAGLSNPFTAGRYHGL 151
C GL + + + G L + + + + EAD + GL PFT
Sbjct: 78 TCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAP 137
Query: 152 VIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193
I + E +G I+AA+ G FHPE
Sbjct: 138 HILEA----GENVEVLSEHNGRIVAAKQG---QFLGCSFHPE 172
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Score = 35.8 bits (81), Expect = 0.002
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 95 FCMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIE 154
C+G++ + E E V L G + + + G + Y+ V
Sbjct: 83 VCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHT 142
Query: 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193
+ +E + DG I + +K + G QFHPE
Sbjct: 143 YRAVCEEEHVLGTTEYDGEIFPSAVRK-GRILGFQFHPE 180
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 203 | |||
| d1qdlb_ | 195 | Anthranilate synthase GAT subunit, TrpG {Archaeon | 100.0 | |
| d1wl8a1 | 188 | GMP synthase subunit A, GuaAA {Archaeon Pyrococcus | 100.0 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 100.0 | |
| d1i7qb_ | 192 | Anthranilate synthase GAT subunit, TrpG {Serratia | 100.0 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1a9xb2 | 228 | Carbamoyl phosphate synthetase, small subunit C-te | 100.0 | |
| d1o1ya_ | 230 | Hypothetical protein TM1158 {Thermotoga maritima [ | 99.97 | |
| d1l9xa_ | 288 | gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta | 99.93 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 99.92 | |
| d1s1ma1 | 258 | CTP synthase PyrG, C-terminal domain {Escherichia | 99.91 | |
| d1vcoa1 | 250 | CTP synthase PyrG, C-terminal domain {Thermus ther | 99.9 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.89 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.88 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.88 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 99.88 | |
| d2ghra1 | 281 | Homoserine O-succinyltransferase HTS (MetA) {Bacil | 99.81 | |
| d2abwa1 | 218 | Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p | 99.8 | |
| d1t3ta2 | 262 | FGAM synthase PurL, amidotransferase domain {Salmo | 99.16 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 97.94 | |
| d1p80a1 | 156 | Catalase, C-terminal domain {Escherichia coli, HPI | 97.46 | |
| d1oi4a1 | 170 | Hypothetical protein YhbO {Escherichia coli [TaxId | 97.35 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 97.22 | |
| d2fexa1 | 188 | Hypothetical protein Atu0886 {Agrobacterium tumefa | 97.17 | |
| d1p5fa_ | 186 | DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.07 | |
| d1sy7a1 | 184 | Catalase, C-terminal domain {Neurospora crassa [Ta | 96.94 | |
| d1u9ca_ | 221 | GK2698 ortholog {Bacillus stearothermophilus [TaxI | 96.88 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 96.02 | |
| d2ab0a1 | 195 | Protein ThiJ (YajL) {Escherichia coli [TaxId: 562] | 95.68 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 95.41 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 95.35 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 95.13 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 94.73 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 94.7 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 94.7 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 94.64 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 94.31 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 94.25 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 94.14 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 94.06 | |
| d1qvwa_ | 236 | Hypothetical protein Ydr533Cp {Baker's yeast (Sacc | 93.84 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 93.83 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 93.76 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 93.64 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 93.5 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 93.14 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 92.83 | |
| d2a5la1 | 196 | Trp repressor binding protein WrbA {Pseudomonas ae | 92.54 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 92.47 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 92.38 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 91.67 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 91.33 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 91.15 | |
| d1uz5a3 | 148 | MoeA, central domain {Archaeon Pyrococcus horikosh | 90.38 | |
| d2ftsa3 | 155 | Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId | 90.31 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 90.3 | |
| d2nqra3 | 149 | MoeA, central domain {Escherichia coli [TaxId: 562 | 90.22 | |
| d1ydga_ | 201 | Trp repressor binding protein WrbA {Deinococcus ra | 90.03 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 89.74 | |
| d1n57a_ | 279 | HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | 89.02 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 88.16 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 87.78 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 87.7 | |
| d1iiba_ | 103 | Enzyme IIB-cellobiose {Escherichia coli [TaxId: 56 | 87.27 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 86.84 | |
| d1z0sa1 | 249 | Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa | 86.41 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 86.29 | |
| d1mkza_ | 170 | MoaB {Escherichia coli [TaxId: 562]} | 86.26 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 85.85 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 84.97 | |
| d1qo0d_ | 189 | Positive regulator of the amidase operon AmiR {Pse | 84.8 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 84.16 | |
| d1wu2a3 | 144 | MoeA, central domain {Pyrococcus horikoshii, PH164 | 84.08 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 83.62 | |
| d1fyea_ | 229 | Aspartyl dipeptidase PepE {Salmonella typhimurium | 83.24 | |
| d1f4pa_ | 147 | Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | 80.73 | |
| d1y5ea1 | 155 | MoaB {Bacillus cereus [TaxId: 1396]} | 80.39 |
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-39 Score=251.76 Aligned_cols=178 Identities=39% Similarity=0.642 Sum_probs=146.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch---HHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI---SFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~---~~~~i~~~ 88 (203)
|.||||||++|||++|++++|+++ |+++++++++..+.++++..++||||++|||+++.+... ...+.+.+
T Consensus 1 ~~~~liiD~~dsft~Ni~~~l~~l------G~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~ 74 (195)
T d1qdlb_ 1 MDLTLIIDNYDSFVYNIAQIVGEL------GSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYL 74 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHT------TCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHH
T ss_pred CCEEEEEECCCchHHHHHHHHHhC------CCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccccccchhhhhhh
Confidence 568999999999999999999999 999999998777888888778999999999999987543 23334446
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEV 165 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~ 165 (203)
..++|+| |||||+|+.++|+++.+.. ...+|. ..+... ......+|.++++.+.++++|++.+.. .+.++..
T Consensus 75 ~~~~PiLGIClG~Qll~~~~G~~v~~~~-~~~~~~~~~~~~~-~~~~~~lf~~~~~~~~~~~~h~~~~~~---~~~~~~~ 149 (195)
T d1qdlb_ 75 GKRTPILGVCLGHQAIGYAFGAKIRRAR-KVFHGKISNIILV-NNSPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIV 149 (195)
T ss_dssp TTTSCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEEEC-CSSCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEE
T ss_pred cCCCCEEEeehhhhhhhhccCCEEEeec-ccccccccccccc-cccccccccCCCccceeeecceeeeec---cccCccc
Confidence 7899999 9999999999999999887 344554 333333 233467999999999999999999876 5567766
Q ss_pred EEEc-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 166 TAWT-EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 166 ~a~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.+ +++.++|+++++++ +||+|||||++.++.|.
T Consensus 150 ~~~~~~~~~i~ai~~~~~~-i~GvQFHPE~~~s~~G~ 185 (195)
T d1qdlb_ 150 DAISAEDNEIMAIHHEEYP-IYGVQFHPESVGTSLGY 185 (195)
T ss_dssp EEEESSSCCEEEEEESSSS-EEEESSBTTSTTCTTHH
T ss_pred ceeccCCCcEEEEEECCCC-EEEEEcCCCCCCCcchH
Confidence 6544 67899999999887 99999999999998874
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=4.1e-40 Score=255.36 Aligned_cols=173 Identities=23% Similarity=0.277 Sum_probs=146.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchH-HHHHHHh-C
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGIS-FRTVLEL-G 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~-~~~i~~~-~ 89 (203)
|+||+||||+++|++++.|+|+++ |+.+++++++ .+.+++. ++|||||+||++++.+.... ..+++.+ .
T Consensus 1 m~ki~iiD~g~~~~~~i~r~l~~l------g~~~~i~~~d-~~~~~~~--~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~ 71 (196)
T d2a9va1 1 MLKIYVVDNGGQWTHREWRVLREL------GVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDD 71 (196)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHHT------TCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHH
T ss_pred CCEEEEEECCCcHHHHHHHHHHHC------CCeEEEEeCC-CCHHHHh--cCCcEEEeccccccccccchhhhHHHHHhh
Confidence 689999999999999999999999 9999999876 5566665 68999999999887765543 3444443 5
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
.++|+| |+|||+|+.++||++.+.. ....++..+..... +++|+++++.+.++++|++.+.. ++++++++|
T Consensus 72 ~~~PilGIC~G~Qll~~~~gg~~~~~~-~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~H~~~v~~---~~~~~~v~a 144 (196)
T d2a9va1 72 HNYPILGICVGAQFIALHFGASVVKAK-HPEFGKTKVSVMHS---ENIFGGLPSEITVWENHNDEIIN---LPDDFTLAA 144 (196)
T ss_dssp CCSCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEESCC---CGGGTTCCSEEEEEEEEEEEEES---CCTTEEEEE
T ss_pred cCceEEEeehhhhhhhhcccccccccc-ccccccceEEEecC---CccccCCCCceEEEecceeEEEe---CCCccceee
Confidence 789999 9999999999999999887 44555555655443 78999999999999999999987 789999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++++.++|+++++++ +||+|||||+..+++|.
T Consensus 145 ~~~~~~v~ai~~~~~~-i~gvQfHPE~~~s~~G~ 177 (196)
T d2a9va1 145 SSATCQVQGFYHKTRP-IYATQFHPEVEHTQYGR 177 (196)
T ss_dssp ECSSCSCSEEEESSSS-EEEESSCTTSTTSTTHH
T ss_pred cccccchheEEECCCC-EEEEEeCcccCCCccHH
Confidence 9999999999999987 99999999999888764
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=3.1e-38 Score=243.96 Aligned_cols=172 Identities=35% Similarity=0.601 Sum_probs=144.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc---cHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL---TVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGP 90 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~---~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~ 90 (203)
.|+|||++|||+++++++|+++ |+.+++++.+.. ..+++...++|+|+++||||++.+......+.+.+..
T Consensus 2 niliiD~~DSFt~ni~~~l~~l------G~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~~~l~~ 75 (192)
T d1i7qb_ 2 DILLLDNVDSFTYNLVDQLRAS------GHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRG 75 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHT------TCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHHHHHBT
T ss_pred cEEEEECCCcHHHHHHHHHHHC------CCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccccccchhhHHhhhc
Confidence 5899999999999999999999 999999987522 2455666689999999999999877665554445778
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++||| |||||+|+.++||+|.+.. ...+|. ..+.... +.+|.+.+..+.++++|++.+.. +++++.++|
T Consensus 76 ~iPiLGIClG~Q~la~~~Gg~v~~~~-~~~~g~~~~~~~~~----~~l~~~~~~~~~~~~~h~~~~~~---~~~~~~~~a 147 (192)
T d1i7qb_ 76 QLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHDG----EGMFAGMANPLPVARYHSLVGSN---IPADLTVNA 147 (192)
T ss_dssp TBCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEEECC----CGGGTTCCSSEEEEEEEEEEEES---CCTTSEEEE
T ss_pred CccEEeeeHHHHHHHHHCCCeEEECC-cccccceEEEeecC----CCceeeccccceEEeeccccccc---ccceeeeec
Confidence 99999 9999999999999999987 456676 4444433 57999999999999999999987 778999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++ ..++|+++++++ +||+|||||+..+++|.
T Consensus 148 ~~~-~~i~ai~~~~~~-i~GvQFHPEs~~t~~G~ 179 (192)
T d1i7qb_ 148 RFG-EMVMAVRDDRRR-VCGFQFHPESILTTHGA 179 (192)
T ss_dssp EET-TEEEEEEETTTT-EEEESSCTTSTTSTTHH
T ss_pred CCC-CeeEEEEECCCC-EEEEEeCCCcCCCCChH
Confidence 875 458999999987 99999999999898874
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9e-36 Score=232.05 Aligned_cols=175 Identities=24% Similarity=0.366 Sum_probs=142.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
+.||+|||++++|+++++|+++++ |+.+++++++ .+.+++....+|||+++|||+++.+..........+..+
T Consensus 5 ~~kI~IiD~G~~~~~~I~r~lr~l------g~~~~I~~~d-~~~~~~~~~~~~giils~gp~~~~~~~~~~~~~~~~~~~ 77 (205)
T d1gpma2 5 KHRILILDFGSQYTQLVARRVREL------GVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAG 77 (205)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHT------TCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGGTSS
T ss_pred cCeEEEEECCchHHHHHHHHHHHC------CCEEEEECCC-CCHHHHhhcCCCeEEecCCCCccchhhhhhHHHHHHhCC
Confidence 468999999999999999999999 9999999886 667777766899999999999998765542222235678
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCC--------CCceEEeecccceeecCCCCCC
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGL--------SNPFTAGRYHGLVIEKDSFRSD 161 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~--------~~~~~~~~~H~~~v~~~~l~~~ 161 (203)
+||| |||||+|+.++||++.+.. ..++|+..+..... ..++.++ +..+.++++|++.+.. +++
T Consensus 78 ~PiLGIClG~Qlla~~~Gg~v~~~~-~~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~~ 150 (205)
T d1gpma2 78 VPVFGVCYGMQTMAMQLGGHVEASN-EREFGYAQVEVVND---SALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPS 150 (205)
T ss_dssp SCEEEETHHHHHHHHHHTCEEECCS-SCEEEEEEEEECSC---CTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCT
T ss_pred CCEEEeccchhhhhhhcCCcccccc-ccccCcceeccccc---cccccccccccccCCccceeeeccccccccc---ccc
Confidence 9999 9999999999999999987 57888866555432 2333333 3446778899998877 678
Q ss_pred CeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 162 ELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 162 ~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
...+++.++++.++++.+++++ +||+|||||++.++.|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~n-i~gvQFHPE~s~s~~G~ 189 (205)
T d1gpma2 151 DFITVASTESCPFAIMANEEKR-FYGVQFHPEVTHTRQGM 189 (205)
T ss_dssp TCEEEEECSSCSCSEEEETTTT-EEEESBCTTSTTSTTHH
T ss_pred cceeeeccCCCceEEEEeCCCC-EEEEEeecccCCCccHH
Confidence 8999998888888999888876 99999999999988774
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-35 Score=231.28 Aligned_cols=166 Identities=19% Similarity=0.336 Sum_probs=137.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~ 90 (203)
..+|+|||++.. +++.+++++. |+.+++++++ .+.+++...+|||||||||||+|.+.+...+.+++ +..
T Consensus 39 ~~~i~~~D~G~k--~~ilr~l~~~------~~~~~v~p~~-~~~~~i~~~~pdgivlS~GPg~P~~~~~~~~~~~~~~~~ 109 (228)
T d1a9xb2 39 PFHVVAYDFGAK--RNILRMLVDR------GCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET 109 (228)
T ss_dssp CEEEEEEESSCC--HHHHHHHHHT------TEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTS
T ss_pred cceEEEEeCCCc--HHhHhHHHhc------CceEEEcCCC-CCHHHHHhcCCCEEEEeCCCCccccchhHHHHHHHHHhC
Confidence 467999999874 5677999999 9999999987 78899998899999999999999998877777877 578
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++||| |||||+|+.++||+|.+.. ..++|. .++..... .++ +...++|++.+...+++ ..+.+++
T Consensus 110 ~iPILGIClG~Qlia~~~Gg~v~k~~-~~~~G~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~-~~~~v~~ 177 (228)
T d1a9xb2 110 DIPVFGICLGHQLLALASGAKTVKMK-FGHHGGNHPVKDVEK----NVV------MITAQNHGFAVDEATLP-ANLRVTH 177 (228)
T ss_dssp CCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEEETTT----TEE------EEEEEEEEEEECSTTCC-TTEEEEE
T ss_pred CCCEEEEEcChHHHHHHcCCceeecc-ccccccccccccccc----cee------eeecccccceecccccc-cceEEEE
Confidence 89999 9999999999999999998 456776 45544332 122 45667898888765554 6777777
Q ss_pred Ec-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 168 WT-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 168 ~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
.+ +++.++|++++++| +||+|||||..++++
T Consensus 178 ~s~~d~~i~ai~h~~~~-i~gVQFHPE~~~t~~ 209 (228)
T d1a9xb2 178 KSLFDGTLQGIHRTDKP-AFSFQGNPEASPGPH 209 (228)
T ss_dssp EETTTCCEEEEEESSSS-EEEESSCTTCSSSCS
T ss_pred EecCCCcEEEEEECCCC-EEEEeCCCCCCCCcc
Confidence 66 68899999999998 999999999999876
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.5e-31 Score=211.61 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=131.2
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEECCCCCCCCCcch---H---H
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVISPGPGAPQESGI---S---F 82 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~GG~~~~~~~~~---~---~ 82 (203)
.+||+||.+.+.. ..++.++|++. |+++++++.... .++++. +||||||+||++++++... + .
T Consensus 3 ~mrvli~qh~~~e~~G~~~~~l~~~------g~~~~~~~~~~~~~~p~~l~--~~d~iii~Ggp~~~~d~~~~~~~~~~~ 74 (230)
T d1o1ya_ 3 HVRVLAIRHVEIEDLGMMEDIFREK------NWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEF 74 (230)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHT------TCEEEEECGGGTCCCSSCGG--GCSEEEECCCSCCTTCTTTCTHHHHHH
T ss_pred ceEEEEEECCCCCCcHHHHHHHHHC------CCEEEEEECCCCCcCCcchh--hCCEEEEcCCCcccccchhhhhhHHHH
Confidence 4789999776432 56789999998 999998865321 122333 5899999999999887532 2 4
Q ss_pred HHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCC
Q 037843 83 RTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFR 159 (203)
Q Consensus 83 ~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~ 159 (203)
++|++ ...++|+| |+|||+|+.++||+|.+.+.+++.|...+.... .+++|+++++.+.++++|++.+. +
T Consensus 75 ~~i~~~~~~~~PilGIC~G~Qlla~alGg~V~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~H~d~~~----l 147 (230)
T d1o1ya_ 75 QLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVS---DNKFFREFPDRLRVFQWHGDTFD----L 147 (230)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECC---CCGGGTTSCSEEEEEEEESEEEC----C
T ss_pred HHHHHHHHhcceEEEeecCHHHHHHHhcccccccccccccccccccccc---chhhhccCCccceEEEecceeee----e
Confidence 55655 36789999 999999999999999997755556655554443 37899999999999999999664 5
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 160 SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 160 ~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|++++++|+++.+.+++++.+ + +||+|||||.+.
T Consensus 148 p~~~~~la~s~~~~~qa~~~~--~-~~g~QfHPE~~~ 181 (230)
T d1o1ya_ 148 PRRATRVFTSEKYENQGFVYG--K-AVGLQFHIEVGA 181 (230)
T ss_dssp CTTCEEEEECSSCSCSEEEET--T-EEEESSBSSCCH
T ss_pred ccchhhhhhhcCCceEEEEec--C-EeEEEeCCCCCH
Confidence 789999999999999999985 3 999999999754
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.3e-26 Score=187.24 Aligned_cols=167 Identities=16% Similarity=0.241 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc--CCCEEEECCCCCCCCCcch--H-----HHHHHH--hCCCCce
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK--KPRGVVISPGPGAPQESGI--S-----FRTVLE--LGPTMPL 94 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~--~~dgiil~GG~~~~~~~~~--~-----~~~i~~--~~~~~Pi 94 (203)
.+.++++++. |+.+.+++++ .+.+++... .+|||||+||+.+...... . ...+.+ .++++||
T Consensus 28 ~sYvk~ie~a------Ga~vvpi~~~-~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~Pi 100 (288)
T d1l9xa_ 28 ASYVKYLESA------GARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPV 100 (288)
T ss_dssp HHHHHHHHHT------TCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHC------CCEEEEECCC-CCHHHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCe
Confidence 4567888887 9999888875 455554421 5799999999876554322 1 111222 3678999
Q ss_pred e--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCC--------CceEEeecccceeecCC-----C
Q 037843 95 F--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLS--------NPFTAGRYHGLVIEKDS-----F 158 (203)
Q Consensus 95 l--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~--------~~~~~~~~H~~~v~~~~-----l 158 (203)
| |+|||+|+.++||++.+.. ....+. .++........+.+|..++ ....++.+|+++|.... .
T Consensus 101 lGIC~G~Qll~~~~gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~H~~~v~~~~~~~~~~ 179 (288)
T d1l9xa_ 101 WGTCLGFEELSLLISGECLLTA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEK 179 (288)
T ss_dssp EEETHHHHHHHHHHHSSCCCEE-EEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHH
T ss_pred EEEcHHHHHHHHHhCCEeeccc-cCcCCcceeEEecCCCccceeEeecccchhhhccCCceEEEecccEEEecccchhhh
Confidence 9 9999999999999988765 233333 4555554444455666654 23457788999995321 1
Q ss_pred CCCCeEEEEEcCCCc---EEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 159 RSDELEVTAWTEDGL---IMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 159 ~~~~~~~~a~s~~~~---v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++++++++|++.|+. +++++++++| +||+|||||++..||..
T Consensus 180 l~~~~~v~a~s~d~~~e~I~~ie~~~~p-i~GvQfHPEk~~fE~~~ 224 (288)
T d1l9xa_ 180 LKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKAPYEWKN 224 (288)
T ss_dssp HHHHEEEEEEEESSSCEEEEEEEESSSC-EEEESSCTTHHHHCCSS
T ss_pred cCCceEEEEEECCCCeEEEEEEEcCCCc-EEEEEcCCCCCCccccc
Confidence 457899999997764 5566788887 99999999999888864
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.4e-25 Score=172.85 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=109.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC----cchHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE----SGISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~----~~~~~~~i~~ 87 (203)
|++|.|||.. +...+..++|+++ |+++.+++. ++++. ++|+|||+||..+... ...+.+.|++
T Consensus 1 m~~igv~~~~-G~~~~~~~al~~~------G~~~~~i~~----~~~l~--~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~ 67 (195)
T d2nv0a1 1 MLTIGVLGLQ-GAVREHIHAIEAC------GAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLRE 67 (195)
T ss_dssp CCEEEEECSS-SCCHHHHHHHHHT------TCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHH
T ss_pred CcEEEEEecC-ChHHHHHHHHHHC------CCcEEEECC----HHHHh--hCCEEEECCCCccHHHHHhhhchhcchhhh
Confidence 6899999995 4456678899999 999988743 44666 5799999887543211 1123455555
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEE---cccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYY---NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~---~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
.++++|+| |+|||+|++++++...+.. +...+. ..... ......+.++++++..+.++++|++.+.. ++
T Consensus 68 ~~~~g~pilGIC~G~Qll~~~~~g~~~~~l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~ 143 (195)
T d2nv0a1 68 FAAQGKPMFGTCAGLIILAKEIAGSDNPHL-GLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE---AG 143 (195)
T ss_dssp HHHTTCCEEEETHHHHHHSBCCC----CCC-CCSCEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEE---EC
T ss_pred hhhhcceeeeccccHHHHHhhhcccccccc-cccccccccccccccceeeeeeecccCCCCCceEEEEeeeEEEe---cC
Confidence 46889999 9999999998877543321 100000 00000 00111244677788888889999999887 67
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 161 ~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+++.++|.+++. +.|++.. +++|+|||||++.
T Consensus 144 ~~~~vla~~~~~-~~a~~~~---ni~g~QFHPE~s~ 175 (195)
T d2nv0a1 144 ENVEVLSEHNGR-IVAAKQG---QFLGCSFHPELTE 175 (195)
T ss_dssp TTCEEEEEETTE-EEEEEET---TEEEESSCTTSSS
T ss_pred CCceeeeeECCE-EEEEEEC---CEEEEEeCCcccC
Confidence 899999987654 4477764 4999999999886
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1e-24 Score=172.00 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=118.3
Q ss_pred CcEEEEeCC----chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH--Hh-ccCCCEEEECCCCCCCCCcchHHHHH
Q 037843 13 NPIVVIDNY----DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAE--LK-RKKPRGVVISPGPGAPQESGISFRTV 85 (203)
Q Consensus 13 ~~i~iid~~----~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~--l~-~~~~dgiil~GG~~~~~~~~~~~~~i 85 (203)
-+|+++--| |+|. ++.++|+..+.+. ++.+.+...+..+.++ .. ..++|||+++||.|....++.+..+-
T Consensus 4 v~Ia~vGKY~~l~DaY~-Sv~eaL~ha~~~~--~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~RG~eGki~ai~ 80 (258)
T d1s1ma1 4 VTIGMVGKYIELPDAYK-SVIEALKHGGLKN--RVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTAR 80 (258)
T ss_dssp EEEEEEESSCSSGGGGH-HHHHHHHHHHHHH--TEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHHHHHHHH
T ss_pred eEEEEEeCcCCCchhHH-hHHHHHHHhHHhc--CCeEEEEEEccccccccccccccccccEEeecccCcCCHHHHHHHHH
Confidence 367888333 4442 3344444432222 6666655433222211 11 12789999999999988888865554
Q ss_pred HHhCCCCcee--ehhHHHHHHHhCCeecccccc--ccc-------------------------------------cceeE
Q 037843 86 LELGPTMPLF--CMGLKCIGEALEGRLYVLLLV--SCM-------------------------------------GKALV 124 (203)
Q Consensus 86 ~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~--~~~-------------------------------------g~~~i 124 (203)
.+..+++|+| |||||+++.++..+|..+... .+. |.+++
T Consensus 81 yARen~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~~~~~~~~~~~~~GgTmrlG~~~~ 160 (258)
T d1s1ma1 81 FARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQC 160 (258)
T ss_dssp HHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEE
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCEEEecccccccCCceeEeecccCccccccCcccch
Confidence 4567889999 999999999987766544310 011 11222
Q ss_pred EEcccccccccccCCCCc--eEEeecccceeecC---CCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 125 YYNEKEEADGLLAGLSNP--FTAGRYHGLVIEKD---SFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 125 ~~~~~~~~~~lf~~~~~~--~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
.+.. +++...++.. +.-.+.|+|+|+++ .|...|+.+++++.++ .+++++.+++||++|+|||||+..++
T Consensus 161 ~l~~----~s~~~~~Y~~~~i~ERHRHRYevN~~y~~~le~~gl~~sG~s~dg~~vEiiEl~~HPffvg~QfHPEf~Srp 236 (258)
T d1s1ma1 161 QLVD----DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTP 236 (258)
T ss_dssp EECT----TCHHHHHTTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCT
T ss_pred hhhh----HHHHHHhcCcceehhhhhcchhhhhhhhhhhhcCCceeeeecCCCCeEEEEEeCCCCeEEEecCCccccCCC
Confidence 2222 3344444432 33447899999874 3445899999999876 69999999999999999999999988
Q ss_pred CCC
Q 037843 199 EGK 201 (203)
Q Consensus 199 ~g~ 201 (203)
.-+
T Consensus 237 ~~p 239 (258)
T d1s1ma1 237 RDG 239 (258)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.6e-24 Score=169.17 Aligned_cols=136 Identities=20% Similarity=0.208 Sum_probs=97.4
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee--ehhHHHHHHHhCCeecccccc--c--------------------
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV--S-------------------- 117 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~--~-------------------- 117 (203)
++|||+++||.|....++.+..+-.+..+++|+| |||||++..++..+|..+... .
T Consensus 58 ~~dGIlvPGGFG~rG~eGki~ai~yARen~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~ 137 (250)
T d1vcoa1 58 DVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEV 137 (250)
T ss_dssp TCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC
T ss_pred cCCeEEecCCCCccchHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceec
Confidence 6899999999998888887654434456889999 999999999988777665420 0
Q ss_pred -------cccceeEEEcccccccccccCCCC--ceEEeecccceeecC---CCCCCCeEEEEEcCC------CcEEEEEe
Q 037843 118 -------CMGKALVYYNEKEEADGLLAGLSN--PFTAGRYHGLVIEKD---SFRSDELEVTAWTED------GLIMAARH 179 (203)
Q Consensus 118 -------~~g~~~i~~~~~~~~~~lf~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~------~~v~a~~~ 179 (203)
+.|.+++.+.. +++...++. .+.-.+.|+|.|+++ .+...++.+++++.+ +.+++++.
T Consensus 138 ~~~ggtmRLG~~~~~l~~----~S~~~~~Y~~~~i~ERhRHRYevN~~y~~~le~~gl~~sg~~~d~~~~~~~lvEiiEl 213 (250)
T d1vcoa1 138 EGLGGTMRLGDWPMRIKP----GTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIEL 213 (250)
T ss_dssp ---CCCCEEEEEEEEECT----TSHHHHHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEE
T ss_pred cccCccccccceeeeecC----CcHHHhhccccEEeehcccceeechhhhHHHHhccccccccCcccccCCCCeEEEEEC
Confidence 11122223322 233333333 234457899999764 234469999999854 48999999
Q ss_pred CCCCcEEEEcCCCCCCCCCCCC
Q 037843 180 KKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 180 ~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++||++|+|||||+..++.-+
T Consensus 214 ~~HPffvgvQfHPEf~Srp~~p 235 (250)
T d1vcoa1 214 KDHPFFLGLQSHPEFKSRPMRP 235 (250)
T ss_dssp TTSSSEEEESSCGGGGCBTTBC
T ss_pred CCCCcEEEecCCccccCCCCCC
Confidence 9999999999999999887643
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=3.1e-23 Score=158.39 Aligned_cols=160 Identities=17% Similarity=0.109 Sum_probs=94.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC------CCcchHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP------QESGISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~------~~~~~~~~~i~ 86 (203)
+||+|||+++++++++.++++++ |+++.+++. ++++. ++|++|++||+... .+.+. ...+.
T Consensus 1 Mki~IiD~G~gN~~si~~~l~~l------g~~~~i~~~----~~~i~--~~d~lIlpG~g~~~~~~~~~~~~~~-~~~~~ 67 (195)
T d1ka9h_ 1 MKALLIDYGSGNLRSAAKALEAA------GFSVAVAQD----PKAHE--EADLLVLPGQGHFGQVMRAFQESGF-VERVR 67 (195)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHT------TCEEEEESS----TTSCS--SCSEEEECCCSCHHHHHHTTSSSCT-HHHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHC------CCeEEEECC----HHHHH--HHhhhhcCCCccccchhhhccccCC-ccccc
Confidence 57999999999999999999999 999988743 34555 57999998876431 12222 23333
Q ss_pred H-hCCCCcee--ehhHHHHHHHhC-------Ceeccccc----cccccceeEEEcccccccccccCCCCceEEeecccce
Q 037843 87 E-LGPTMPLF--CMGLKCIGEALE-------GRLYVLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLV 152 (203)
Q Consensus 87 ~-~~~~~Pil--ClG~Qlla~a~g-------g~v~~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~ 152 (203)
. ...++|+| |+|||+|+.... ..+..... ...... ....... ....... ......++.|++.
T Consensus 68 ~~~~~g~pilGiClG~qll~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 143 (195)
T d1ka9h_ 68 RHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQ-MGWNALE--FGGAFAP-LTGRHFYFANSYY 143 (195)
T ss_dssp HHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSE-EEEEECE--ECGGGGG-GTTCEEEEEESEE
T ss_pred ccccccchhhhhhhhhheeeeccccccccCCceeeeccccccccccccc-ccccccc--ccccccc-cccccccccccee
Confidence 3 45789999 999999986421 11111110 000000 0000000 0011111 1234567778887
Q ss_pred eecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 153 IEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 153 v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+.. . +.....+...+. .+.+++ ++ ++||+|||||+++
T Consensus 144 ~~~---~-~~~~~~~~~~~~~~~a~v~-~~--ni~GvQFHPEkS~ 181 (195)
T d1ka9h_ 144 GPL---T-PYSLGKGEYEGTPFTALLA-KE--NLLAPQFHPEKSG 181 (195)
T ss_dssp CCC---C-TTCCEEEEETTEEEEEEEE-CS--SEEEESSCTTSSH
T ss_pred eec---c-ccceeeeecCCceEEEEEE-cC--CEEEEeCCccccc
Confidence 765 3 333334444333 445555 44 4999999999875
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1e-24 Score=168.35 Aligned_cols=167 Identities=17% Similarity=0.068 Sum_probs=91.0
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~i~ 86 (203)
+||+|||++.++..++.++++++ |..+.++.....+.++.. .+|+||| ||+|+..+. ..+.+.|+
T Consensus 1 MKI~IiDyg~gN~~si~~al~~~------g~~~~~~~~~~~~~~~~~--~~D~lIl-PG~G~f~~~~~~l~~~~~~~~i~ 71 (200)
T d1k9vf_ 1 MRIGIISVGPGNIMNLYRGVKRA------SENFEDVSIELVESPRND--LYDLLFI-PGVGHFGEGMRRLRENDLIDFVR 71 (200)
T ss_dssp CEEEEECSSSSCCHHHHHHHHHH------TTTSSSCEEEEESSSCSC--CCSEEEE-CCCSCHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHh------ccccccceEEEeCChHhh--ccCeEEE-cChHHHHHHHHhhhccccccccc
Confidence 47999999999999999999998 543222111101112222 5899999 556653221 12345555
Q ss_pred H-hCCCCcee--ehhHHHHHHHhCCeec--cccc----cccccceeEEEcccccccccccCCCCceEEeecccceeecCC
Q 037843 87 E-LGPTMPLF--CMGLKCIGEALEGRLY--VLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDS 157 (203)
Q Consensus 87 ~-~~~~~Pil--ClG~Qlla~a~gg~v~--~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~ 157 (203)
+ +.+++||| |+|||+|+...++... .... ........+.+... ....+........+++.|++.+..
T Consensus 72 ~~~~~~~PiLGIClG~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~hs~~~~~-- 147 (200)
T d1k9vf_ 72 KHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGW--NEVIFKDTFPNGYYYFVHTYRAVC-- 147 (200)
T ss_dssp HHHHTTCEEEEETHHHHTTEEEETTSTTCCCCCCEEEEEEECSCSSCSEEEE--EEEEESSSSCCEEEEEEESEEEEE--
T ss_pred ccccccceEEEEecceeEEeeecccCcccccccccccccccccccccccccc--ccccccccCCceEEEEeeeeeecc--
Confidence 5 46789999 9999999976432211 1100 00000000000000 011122222345677889998876
Q ss_pred CCCCCeEEEEEcCCCcE-EEEEeCCCCcEEEEcCCCCCCC
Q 037843 158 FRSDELEVTAWTEDGLI-MAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 158 l~~~~~~~~a~s~~~~v-~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.+.....++......+ .+++.. ++||+|||||++.
T Consensus 148 -~~~~~~~~~~~~~~~~~a~v~~~---ni~GvQFHPEkS~ 183 (200)
T d1k9vf_ 148 -EEEHVLGTTEYDGEIFPSAVRKG---RILGFQFHPEKSS 183 (200)
T ss_dssp -CGGGEEEEEEETTEEEEEEEEET---TEEEESSBGGGSH
T ss_pred -cccceEEEEEECCeEEEEEEEcC---CEEEEeCCCcccc
Confidence 3233333333233333 455553 3999999999763
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.88 E-value=1.6e-23 Score=162.04 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=107.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~ 87 (203)
.+||.|||.. ++..+..++|+++ |+++.+++. ++++. ++|+|||+||+.+.... ..+.++|++
T Consensus 6 ~mkIgii~~~-Gn~~s~~~al~~~------G~~~~~v~~----~~~l~--~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~ 72 (202)
T d1q7ra_ 6 NMKIGVLGLQ-GAVREHVRAIEAC------GAEAVIVKK----SEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQ 72 (202)
T ss_dssp CCEEEEESCG-GGCHHHHHHHHHT------TCEEEEECS----GGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHH
T ss_pred CCEEEEEECC-CCHHHHHHHHHHC------CCcEEEECC----HHHHh--cCCEEEECCCCcHHHHHHhhhhHHHHHHhh
Confidence 4789999884 4567788999999 999988742 45665 68999998876432211 113566666
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEccc--------ccccccccCCCCceEEeecccceeecC
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK--------EEADGLLAGLSNPFTAGRYHGLVIEKD 156 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--------~~~~~lf~~~~~~~~~~~~H~~~v~~~ 156 (203)
.+.++|+| |+|||+|+...++...+ ..|...+..... .+....+.++......+++|++.+..
T Consensus 73 ~~~~gkPiLGIClG~Qll~~~~~~~~~~-----~lg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (202)
T d1q7ra_ 73 FAAAGKPMFGTCAGLILLAKRIVGYDEP-----HLGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVE- 146 (202)
T ss_dssp HHHTTCCEEEETTHHHHHEEEEESSCCC-----CCCCEEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEE-
T ss_pred hccccceeeeeehhhHHhhhhcccccee-----ecccccccccccccccccccceeccccccccCCcceEEEeeccccc-
Confidence 47889999 99999999765543221 122212211110 01123445555667778888888877
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 157 SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 157 ~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+++++.++|+.++ .+.+++.. +++|+|||||++.
T Consensus 147 --~~~~~~~~a~~~~-~~~a~~~g---ni~G~QFHPEkS~ 180 (202)
T d1q7ra_ 147 --AGDGVDVLATYND-RIVAARQG---QFLGCSFHPELTD 180 (202)
T ss_dssp --ECTTCEEEEEETT-EEEEEEET---TEEEESSCGGGSS
T ss_pred --cccceeEEeecCC-EEEEEEeC---CEEEEEeCCccCC
Confidence 6789999998865 45677654 3999999999974
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=7.9e-20 Score=147.15 Aligned_cols=140 Identities=16% Similarity=0.075 Sum_probs=99.4
Q ss_pred cHHHHhccCCCEEEECCCCCCCCCc---ch---HHHHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeE
Q 037843 54 TVAELKRKKPRGVVISPGPGAPQES---GI---SFRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALV 124 (203)
Q Consensus 54 ~~~~l~~~~~dgiil~GG~~~~~~~---~~---~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i 124 (203)
+.+++...+|||+||||+|.+..+. .. +.++++.. .+.+|+| |+|+|+++.++||.+.+...+...|..+.
T Consensus 75 ~~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~Gv~~~ 154 (281)
T d2ghra1 75 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEH 154 (281)
T ss_dssp CHHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEE
T ss_pred hHHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceEEEEEE
Confidence 4566766689999999999876432 22 24455543 4678999 99999999999998877653555666444
Q ss_pred EEcccccccccccCCCCceEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 125 YYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 125 ~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.... +.++|+.++++.|.+.++|.-.+..+.+ .+++..+++.|+.+.+.++...+.+ ++++|+|||++.
T Consensus 155 ~~~~--~~~pL~~g~~d~f~~p~Sr~~~~~~d~v~~~p~l~vLa~S~~~g~~~~~~~~~~-~~~iQgHPEYd~ 224 (281)
T d2ghra1 155 EVRE--QHVKLLQGFDELFFAPHSRHTEVRESDIREVKELTLLANSEEAGVHLVIGQEGR-QVFALGHSEYSC 224 (281)
T ss_dssp EECC--SSCGGGTTCCSEEEEEEEEEEECCHHHHHTCTTEEEEEEETTTEEEEEEEGGGT-EEEECSCTTCCT
T ss_pred eecc--CCChhccCCcchhheeeeecccCCHHHHhhCCCceEEeecCCcccEEEEECCCC-EEEEeCCCCcch
Confidence 4332 2378999999988888777433332111 2468888888877666666666655 999999999975
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.80 E-value=7.7e-20 Score=142.11 Aligned_cols=164 Identities=17% Similarity=0.125 Sum_probs=94.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-c-----hHHH-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-G-----ISFR- 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~-----~~~~- 83 (203)
..+|.||+..+++ .+..++|+++ |. .+++... .+++++. ++|+|||+||....... . ...+
T Consensus 2 ~ikIGvl~l~G~~-~~~~~al~~l------g~~~~~v~~~--~~~~~l~--~~D~lIlPGgg~~~~~~~~~~~~~~~~~~ 70 (218)
T d2abwa1 2 EITIGVLSLQGDF-EPHINHFIKL------QIPSLNIIQV--RNVHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNA 70 (218)
T ss_dssp CEEEEEECTTSCC-HHHHHHHHTT------CCTTEEEEEE--CSHHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHH
T ss_pred CCEEEEEeCCCcH-HHHHHHHHHc------CCCceEEEEe--CCHHHHh--hCCEEEEcCCCccHHHHHHHHHhccchHH
Confidence 4689999985444 5556788888 63 2333222 3577887 57999998875422111 0 1122
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHHhCCeecccccccc--------------ccc------eeEEEcccccccccccCCC
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSC--------------MGK------ALVYYNEKEEADGLLAGLS 140 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~--------------~g~------~~i~~~~~~~~~~lf~~~~ 140 (203)
+++. ...++||| |+|||+|+...++.......... .+. ..+... ..+..+....
T Consensus 71 i~~~~~~~gkPilGIC~G~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 147 (218)
T d2abwa1 71 LVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNII---SDSSAFKKDL 147 (218)
T ss_dssp HHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEEC---CCCTTCCTTC
T ss_pred HHHHHHHcCCeEEEecHHHHHHHHhccCCccccccccccccccccccceecccCCcccccccceeec---cCCccccCcc
Confidence 3333 35789999 99999998865543322110000 000 011111 1133444444
Q ss_pred CceEEeecccceeecCCCCCCCeEEEEEcC---C--CcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 NPFTAGRYHGLVIEKDSFRSDELEVTAWTE---D--GLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 ~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~---~--~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
....+++.|++.+.. ++...+++.. . ..+.|++.. +++|+|||||++..
T Consensus 148 ~~~~~y~~h~~~~~~-----~~~~~~a~~~~~~~g~~~i~av~~~---ni~G~QFHPE~s~d 201 (218)
T d2abwa1 148 TAACIRAPYIREILS-----DEVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPELLPH 201 (218)
T ss_dssp EEEEESCCEEEEECC-----TTCEEEEEEEETTTEEEEEEEEEET---TEEEESSCGGGSSC
T ss_pred cceeEEeeEEEEeec-----CChhhheeeccccCCCeEEEEEecC---CEEEEEcCCeecCC
Confidence 445566778888753 4566666542 1 257788765 49999999998753
|
| >d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: FGAM synthase PurL, amidotransferase domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=1.6e-10 Score=91.12 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=106.5
Q ss_pred CCCCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--Ccch-----
Q 037843 9 KNDKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--ESGI----- 80 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--~~~~----- 80 (203)
.+.++||+||-..+++ ..-...+|+.. |+++.+++..+....+....++|+|+|+||.+.-+ ..+.
T Consensus 3 ~~~kpkvaVl~~pGtNcd~e~~~Af~~a------G~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~ag~~~a~~ 76 (262)
T d1t3ta2 3 TGARPKVAVLREQGVNSHVEMAAAFHRA------GFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKS 76 (262)
T ss_dssp TTCCCEEEEEECTTBCCHHHHHHHHHHT------TCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTSTTHHHHHH
T ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHHc------CCceEEEEeeecccCcccccccceEEEeccccccccccchhHHHhh
Confidence 3457999999877766 34577899998 99998886532111111112689999999875322 2221
Q ss_pred ------HHHHHHH-h-CCCCcee--ehhHHHHHHH--h-CCe-----ecccccc-ccccceeEEEcccccccccccCCC-
Q 037843 81 ------SFRTVLE-L-GPTMPLF--CMGLKCIGEA--L-EGR-----LYVLLLV-SCMGKALVYYNEKEEADGLLAGLS- 140 (203)
Q Consensus 81 ------~~~~i~~-~-~~~~Pil--ClG~Qlla~a--~-gg~-----v~~~~~~-~~~g~~~i~~~~~~~~~~lf~~~~- 140 (203)
....+.+ + ..++|+| |-|+|+|.+. + .+. ....... -+.-|..++... ..+.+++++.
T Consensus 77 ~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg~~~~~~~~~N~s~rfe~rw~~~~v~~--~~s~~~~~~~g 154 (262)
T d1t3ta2 77 ILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQ--SPSLLLQGMVG 154 (262)
T ss_dssp HHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECC--CSCGGGTTCTT
T ss_pred hhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCCcccCcccccccCCeEEEEEeeecccc--ccChhhccCCC
Confidence 1122222 2 4689999 9999999874 2 111 1111101 111223344332 2356677765
Q ss_pred CceEEeecccce---eecC----CCCCCCeEEEEEc-------------CCC---cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 NPFTAGRYHGLV---IEKD----SFRSDELEVTAWT-------------EDG---LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 ~~~~~~~~H~~~---v~~~----~l~~~~~~~~a~s-------------~~~---~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
..+.+...|+.. +..+ .|..++..++-+. .++ .|+++...+++ ++|...|||+...
T Consensus 155 ~~l~ipiaHgEG~f~~~~~~~l~~L~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IAGIcs~~Gr-vlgmMPHPER~~~ 233 (262)
T d1t3ta2 155 SQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGR-VTIMMPHPERVFR 233 (262)
T ss_dssp CEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSS-EEEESSBGGGSSB
T ss_pred cceEeeeecCCCCcccCCHHHHHHhhhccceEEEEEcCCCccccccCCCCCCCccceeEEECCCCC-EEEEcCChhHhhh
Confidence 346666666554 2111 1222344444432 122 49999999987 9999999999776
Q ss_pred CCC
Q 037843 198 SEG 200 (203)
Q Consensus 198 ~~g 200 (203)
++.
T Consensus 234 ~~q 236 (262)
T d1t3ta2 234 TVA 236 (262)
T ss_dssp GGG
T ss_pred ccc
Confidence 543
|
| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=4.1e-06 Score=63.69 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=60.5
Q ss_pred CCcEEEEeC----CchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc-------------------------------
Q 037843 12 KNPIVVIDN----YDSF----TYNLCQYMGELELELSQGYHFEVYRNDE------------------------------- 52 (203)
Q Consensus 12 ~~~i~iid~----~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~------------------------------- 52 (203)
|+||+||=. +|++ .-.....|++. |++++++.++.
T Consensus 1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~ra------G~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~ 74 (217)
T d1vhqa_ 1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRS------GAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGE 74 (217)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHT------TCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTC
T ss_pred CCEEEEEecCCCCCCchhHHHHHHHHHHHHHC------CCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccc
Confidence 678888832 2333 12244677888 99998875431
Q ss_pred -ccHHHHhccCCCEEEECCCCCCCCCc-------------chHHHHHHHh-CCCCcee--ehhHHHHHHHhC
Q 037843 53 -LTVAELKRKKPRGVVISPGPGAPQES-------------GISFRTVLEL-GPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 53 -~~~~~l~~~~~dgiil~GG~~~~~~~-------------~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~g 107 (203)
.+.+++...+||+|||+||.+...+. ..+.++++++ ..++||- |-|-++|+.+++
T Consensus 75 ~~~l~~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~ 146 (217)
T d1vhqa_ 75 IRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 146 (217)
T ss_dssp CEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred cCChHHCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence 02334444479999999998853221 2356777774 6789999 999999999854
|
| >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Escherichia coli, HPII [TaxId: 562]
Probab=97.46 E-value=4.5e-05 Score=54.58 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=56.4
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~ 74 (203)
++||+||-+.+.. ...+.+.|++. |+.+.++-... .+.++.....||+|||+||.+.
T Consensus 3 grkVaiLv~dg~~~~e~~~~~~~l~~a------g~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~ 76 (156)
T d1p80a1 3 GRVVAILLNDEVRSADLLAILKALKAK------GVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIA 76 (156)
T ss_dssp TCEEEEECCTTCCHHHHHHHHHHHHHH------TCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHC------CCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchH
Confidence 4688888443211 23355677777 88887764321 1222333337899999998543
Q ss_pred C-CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 75 P-QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ~-~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
. ...+....++++ +.+.+||- |-|.++|+.+
T Consensus 77 ~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~a 111 (156)
T d1p80a1 77 DIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 111 (156)
T ss_dssp HHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred HHhcchHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence 1 123345778888 57889998 9999999765
|
| >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein YhbO species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00018 Score=52.09 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=55.4
Q ss_pred CcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc----------------ccHHHHhccCCCEEEECCCC
Q 037843 13 NPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE----------------LTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~----------------~~~~~l~~~~~dgiil~GG~ 72 (203)
+||+||-.. +| .......|++. |+++.++.... .+.+++...+||+||++||.
T Consensus 2 KkIail~~d-gf~~~E~~~~~~~l~~a------g~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~ 74 (170)
T d1oi4a1 2 KKIAVLITD-EFEDSEFTSPADEFRKA------GHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH 74 (170)
T ss_dssp CEEEEECCT-TBCTHHHHHHHHHHHHT------TCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT
T ss_pred CEEEEEeCC-CcCHHHHHHHHHHHHHC------CCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccch
Confidence 578888432 23 22345677777 88776653310 12233333478999999996
Q ss_pred CCCC--CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 73 GAPQ--ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~~--~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+... ....+.+++++ ..+++||. |-|-.+|+.+
T Consensus 75 ~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~ 112 (170)
T d1oi4a1 75 SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 112 (170)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred hhhhhccChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence 5322 23446778887 46889999 9999999975
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.22 E-value=0.00021 Score=51.27 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=55.5
Q ss_pred CcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCC
Q 037843 13 NPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 13 ~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~ 74 (203)
+||+|+-+. +| .....+.|++. |+++.++..+. .+.+++...+||+||++||.+.
T Consensus 1 mKv~il~~d-gf~~~E~~~p~~~l~~a------g~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~ 73 (166)
T d1g2ia_ 1 MKVLFLTAN-EFEDVELIYPYHRLKEE------GHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAP 73 (166)
T ss_dssp CEEEEECCT-TBCHHHHHHHHHHHHHT------TCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH
T ss_pred CEEEEEeCC-CcCHHHHHHHHHHHHHC------CCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccch
Confidence 467777332 23 12244567777 88887765431 1233443347899999999754
Q ss_pred CC--CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 75 PQ--ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ~~--~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.. ....+.++++++ .+++||. |-|-.+|+.+
T Consensus 74 ~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 109 (166)
T d1g2ia_ 74 ERVRLNEKAVSIARKMFSEGKPVASICHGPQILISA 109 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred hhhccChHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence 22 233466778774 6789998 9999999986
|
| >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Atu0886 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.17 E-value=0.00021 Score=52.61 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=55.2
Q ss_pred CCcEEEEeCC--chH-HHHHHHHHHH-hhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNY--DSF-TYNLCQYMGE-LELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~--~~~-~~~l~~~l~~-~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~ 73 (203)
|+||+|+=+. ..+ ...+...++. . |+++.++..+. .+.+++...+||.|||+||.+
T Consensus 1 M~kv~vll~~gf~~~E~~~~~~~l~~~~------g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~ 74 (188)
T d2fexa1 1 MTRIAIALAQDFADWEPALLAAAARSYL------GVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS 74 (188)
T ss_dssp CCEEEEECCTTBCTTSSHHHHHHHHHHS------CCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH
T ss_pred CCEEEEEeCCChhHHHHHHHHHHHhhcC------CcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCcc
Confidence 5778777332 111 2334556654 4 78877765432 123344334799999999865
Q ss_pred CC-CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 74 AP-QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 74 ~~-~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.. .....+.++++++ .+++||. |-|-.+|+.+
T Consensus 75 ~~~~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~a 110 (188)
T d2fexa1 75 WEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp HHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence 32 1233467788874 6788998 9999999874
|
| >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: DJ-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00046 Score=50.40 Aligned_cols=86 Identities=17% Similarity=0.092 Sum_probs=57.0
Q ss_pred CcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc---------------ccHHHHhc-cCCCEEEECCCC
Q 037843 13 NPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE---------------LTVAELKR-KKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~---------------~~~~~l~~-~~~dgiil~GG~ 72 (203)
+||+|+=+. +|. -...+.|++. |++++++.... .+.+++.. .+||+|+|+||.
T Consensus 2 Kkvlvll~~-Gfe~~E~~~p~~~l~~a------g~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~ 74 (186)
T d1p5fa_ 2 KRALVILAK-GAEEMETVIPVDVMRRA------GIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 74 (186)
T ss_dssp CEEEEEECT-TCCHHHHHHHHHHHHHT------TCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCH
T ss_pred cEEEEEeCC-CCCHHHHHHHHHHHHHC------CCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCc
Confidence 678777543 231 2345677777 88887765321 13445443 369999999986
Q ss_pred CCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 73 GAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+.+. +...+.++++++ .+++||. |-|-.+|+.+
T Consensus 75 ~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a 113 (186)
T d1p5fa_ 75 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 113 (186)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred cccccccchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence 5432 234456778774 6789998 9999999985
|
| >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Neurospora crassa [TaxId: 5141]
Probab=96.94 E-value=0.00035 Score=50.80 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=57.2
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~ 73 (203)
.+||+||-+. +| .......|++. |+.+.++-... .+.++....+||+++++||.+
T Consensus 3 ~rkI~ilv~d-G~~~~e~~~~~~~l~~a------g~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~ 75 (184)
T d1sy7a1 3 SRRVAIIIAD-GYDNVAYDAAYAAISAN------QAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAK 75 (184)
T ss_dssp TCEEEEECCT-TBCHHHHHHHHHHHHHT------TCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHH
T ss_pred ccEEEEEecC-CCcHHHHHHHHHHHHHC------CCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccc
Confidence 4688888443 23 22345667777 88888775321 112233334689999999875
Q ss_pred CCC---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 74 APQ---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 74 ~~~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+. ....+.+++++ ..+++||. |-|-++|+.+
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~a 113 (184)
T d1sy7a1 76 AAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKA 113 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred cccccccccchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence 433 23456778887 46889999 9999999986
|
| >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: GK2698 ortholog species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.88 E-value=0.00077 Score=50.75 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=34.5
Q ss_pred ccCCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 60 RKKPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 60 ~~~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
..+||+|+|+||.+... +...+.++++++ .+++||- |-|-++|..+
T Consensus 84 ~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a 135 (221)
T d1u9ca_ 84 AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 135 (221)
T ss_dssp GSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeecc
Confidence 34799999999987543 333456777774 6789998 9999988763
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.02 E-value=0.014 Score=39.07 Aligned_cols=79 Identities=11% Similarity=0.222 Sum_probs=51.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.|||+|||-.......+.+.|+.. |+.+.....-..-.+.+....||.||+-= ..|...+ .+.+.+++...
T Consensus 1 sPkILiVDD~~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~~~~~~~dlvl~D~--~mP~~~G~el~~~ir~~~~ 72 (121)
T d1ys7a2 1 SPRVLVVDDDSDVLASLERGLRLS------GFEVATAVDGAEALRSATENRPDAIVLDI--NMPVLDGVSVVTALRAMDN 72 (121)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEES--SCSSSCHHHHHHHHHHTTC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhCCCCEEEEEe--eccCcccHHHHHHHHhcCC
Confidence 479999998888888899999998 99887654321122334445899998821 1122223 24566676667
Q ss_pred CCcee-ehh
Q 037843 91 TMPLF-CMG 98 (203)
Q Consensus 91 ~~Pil-ClG 98 (203)
++||+ .-|
T Consensus 73 ~~piI~lt~ 81 (121)
T d1ys7a2 73 DVPVCVLSA 81 (121)
T ss_dssp CCCEEEEEC
T ss_pred CCEEEEEEe
Confidence 79988 433
|
| >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Protein ThiJ (YajL) species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0053 Score=44.99 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCC-----------------cccHHHHhccCCCEEEECCCCCCCC---CcchHHHHHHH
Q 037843 28 LCQYMGELELELSQGYHFEVYRND-----------------ELTVAELKRKKPRGVVISPGPGAPQ---ESGISFRTVLE 87 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~-----------------~~~~~~l~~~~~dgiil~GG~~~~~---~~~~~~~~i~~ 87 (203)
....|++. |++++++... +.+.+++...+||+||++||.+.+. +...+.+++++
T Consensus 20 p~d~L~ra------g~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~ 93 (195)
T d2ab0a1 20 TIDLLVRG------GIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQ 93 (195)
T ss_dssp HHHHHHHT------TCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHC------CCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHHHHHHHHH
Confidence 44677777 8777665321 0235666555899999999965432 23446678887
Q ss_pred h-CCCCcee--ehh-HHHHHHH
Q 037843 88 L-GPTMPLF--CMG-LKCIGEA 105 (203)
Q Consensus 88 ~-~~~~Pil--ClG-~Qlla~a 105 (203)
+ .+++||. |-| ..+|+.+
T Consensus 94 ~~~~gk~i~aiC~g~a~lLa~a 115 (195)
T d2ab0a1 94 FHRSGRIVAAICAAPATVLVPH 115 (195)
T ss_dssp HHHTTCEEEEETHHHHHHTTTT
T ss_pred Hhhccceeeeeeccchhhhhhc
Confidence 4 6789999 999 6787765
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.41 E-value=0.029 Score=37.35 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=48.7
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-HHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-SFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i~~~~ 89 (203)
|++||+|||-.......+.++|+.. |+.+.....-....+.+....||.||+== ..|...|. +...++...
T Consensus 1 M~krILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~l~~~~~dlillD~--~mp~~~G~~~~~~~r~~~ 72 (121)
T d1mvoa_ 1 MNKKILVVDDEESIVTLLQYNLERS------GYDVITASDGEEALKKAETEKPDLIVLDV--MLPKLDGIEVCKQLRQQK 72 (121)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEES--SCSSSCHHHHHHHHHHTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcccccEEEecc--cccCCCCchhhhhhhccC
Confidence 3468999998887888899999998 99987654321122333344799999811 11222332 344555555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...||+
T Consensus 73 ~~~~ii 78 (121)
T d1mvoa_ 73 LMFPIL 78 (121)
T ss_dssp CCCCEE
T ss_pred CCCEEE
Confidence 667777
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.35 E-value=0.076 Score=35.32 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=51.1
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-HHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-SFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i~~~~~~ 91 (203)
++|+|||-.......+.+.|+.. |+.+........-.+.+....||.||+= ...|...|. +.+.+++...+
T Consensus 4 ~~ILIVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~~a~~~l~~~~~dlii~D--~~mp~~~G~el~~~l~~~~~~ 75 (123)
T d1krwa_ 4 GIVWVVDDDSSIRWVLERALAGA------GLTCTTFENGNEVLAALASKTPDVLLSD--IRMPGMDGLALLKQIKQRHPM 75 (123)
T ss_dssp CEEEEESSSHHHHHHHHHHHHHT------TCEEEEESSSHHHHHHHTTCCCSEEEEC--CSSSSSTTHHHHHHHHHHSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhCCCCEEEeh--hhcCCchHHHHHHHHHHhCCC
Confidence 57999998888888899999998 9998775433222334444579999982 122333343 45666666677
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 76 ~piI 79 (123)
T d1krwa_ 76 LPVI 79 (123)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 9998
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.056 Score=36.59 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=53.4
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
.....+|+|||-.......+.+.|+.. |+.+.....-..-.+-+....||.||+--. .|.-.| .+.+.+++
T Consensus 5 ~~~~~~ILiVDD~~~~~~~l~~~L~~~------g~~v~~a~~g~ea~~~~~~~~~dlillD~~--mP~~dG~el~~~ir~ 76 (133)
T d2ayxa1 5 DNDDMMILVVDDHPINRRLLADQLGSL------GYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQ 76 (133)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHH------TSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEECcHHHHHHHHhccCceEEEEecc--CCCCCHHHHHHHHHH
Confidence 344678999998877788899999999 999876543211123333447999998221 233333 35666777
Q ss_pred hCCCCcee-ehh
Q 037843 88 LGPTMPLF-CMG 98 (203)
Q Consensus 88 ~~~~~Pil-ClG 98 (203)
....+||+ +-|
T Consensus 77 ~~~~~pii~lt~ 88 (133)
T d2ayxa1 77 LGLTLPVIGVTA 88 (133)
T ss_dssp HHCCSCEEEEES
T ss_pred hCCCCCEEEEec
Confidence 65678988 544
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=94.73 E-value=0.054 Score=35.91 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=50.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.||+|||-.......+.+.|+.. |+.+.....-..-.+.+....||.|++- -..|.-.| .+.+.+++...+
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~------g~~v~~a~~g~eal~~~~~~~~dlillD--~~mP~~~G~el~~~lr~~~~~ 73 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKE------GYQTFQAANGLQALDIVTKERPDLVLLD--MKIPGMDGIEILKRMKVIDEN 73 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEE--SCCTTCCHHHHHHHHHHHCTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHc------CCEEEEeCCHHHHHHHHHhCCCCEEEEe--ccCCCCCHHHHHHHHHHhCCC
Confidence 58999998888888899999988 9988754321111223333478988882 12233333 345666776678
Q ss_pred Ccee-ehh
Q 037843 92 MPLF-CMG 98 (203)
Q Consensus 92 ~Pil-ClG 98 (203)
.|++ +-|
T Consensus 74 ~pvi~lt~ 81 (119)
T d1peya_ 74 IRVIIMTA 81 (119)
T ss_dssp CEEEEEES
T ss_pred CcEEEEec
Confidence 9998 544
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=94.70 E-value=0.1 Score=35.68 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=37.6
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
+.||+|| ....+++..+++.+.+... ..|+.+++++....+.+++.. .++|+||| |.|
T Consensus 2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~--~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 62 (149)
T d1ycga1 2 KAKAVIAYDTMWLSTEKMAHALMDGLV--AGGCEVKLFKLSVSDRNDVIKEILDARAVLV-GSP 62 (149)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHH--HTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE-ECC
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHH--hcCCeeEEEEccccchHHHhhhhhhCCeEEE-Eee
Confidence 4678777 4556778777776655321 128899888765556665532 25899999 555
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.061 Score=35.74 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-HHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-SFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i~~~~~ 90 (203)
.|+|||||-.......+.++|++. |+.+..........+.+....||.||+- ...|...+. +.+.+++. .
T Consensus 2 tp~ILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~l~~~~~dlii~D--~~mp~~~G~~~~~~~r~~-~ 72 (121)
T d1xhfa1 2 TPHILIVEDELVTRNTLKSIFEAE------GYDVFEATDGAEMHQILSEYDINLVIMD--INLPGKNGLLLARELREQ-A 72 (121)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHSCCSEEEEC--SSCSSSCHHHHHHHHHHH-C
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC------CCEEEEECChHHHHHHHHhcCCCEEEee--cccCCccCcHHHHHHHhc-C
Confidence 479999998887888899999998 9988765332122233444589999982 223333332 33444443 4
Q ss_pred CCcee-ehhH
Q 037843 91 TMPLF-CMGL 99 (203)
Q Consensus 91 ~~Pil-ClG~ 99 (203)
++|++ +-|+
T Consensus 73 ~~pii~lt~~ 82 (121)
T d1xhfa1 73 NVALMFLTGR 82 (121)
T ss_dssp CCEEEEEESC
T ss_pred CCcEEEEECC
Confidence 69998 6554
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=94.64 E-value=0.037 Score=37.19 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=49.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+|+|+|||-...+...+.+.|+.. |+.+.....-....+.+....||.||+--. .|...+ .+.+.+++...
T Consensus 2 kP~ILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~~~~~~~dliilD~~--mp~~~G~~~~~~i~~~~~ 73 (128)
T d1yioa2 2 KPTVFVVDDDMSVREGLRNLLRSA------GFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISD 73 (128)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc------CCCccccccHHHHHHHHHhcCCCEeehhhh--cccchhHHHHHHHHhhCC
Confidence 689999998888888899999998 998876532111122222346888887221 233233 24555666556
Q ss_pred CCcee-ehh
Q 037843 91 TMPLF-CMG 98 (203)
Q Consensus 91 ~~Pil-ClG 98 (203)
..|+. +-|
T Consensus 74 ~~~ii~lt~ 82 (128)
T d1yioa2 74 GIPIVFITA 82 (128)
T ss_dssp CCCEEEEES
T ss_pred CCeEEEEEE
Confidence 67777 544
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.31 E-value=0.095 Score=34.72 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=51.1
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.||+|||-...+...+.++|+.. |+.+.....-..-.+.+....||.||+-= ..|...+ .+...+++....
T Consensus 2 irILiVdDd~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~l~~~~~dlillD~--~mp~~~g~~~~~~lr~~~~~ 73 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKKE------MFTVDVCYDGEEGMYMALNEPFDVVILDI--MLPVHDGWEILKSMRESGVN 73 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEES--CCSSSCHHHHHHHHHHTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC------CCEEEEEcchHHHHHHHHhhCcccccccc--ccccchhHHHHHHHHhcCCC
Confidence 58999998888888899999998 99987654321112334445899999832 1233333 245566665667
Q ss_pred Ccee-ehh
Q 037843 92 MPLF-CMG 98 (203)
Q Consensus 92 ~Pil-ClG 98 (203)
.|++ .-|
T Consensus 74 ~piI~lt~ 81 (122)
T d1kgsa2 74 TPVLMLTA 81 (122)
T ss_dssp CCEEEEES
T ss_pred CcEEEEcC
Confidence 8988 433
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.25 E-value=0.074 Score=36.08 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=51.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
+||+|||-...+...+.+.|+.. |+.+.....-..-.+.+....||.||+- ...|...+ .+.+.+++...+
T Consensus 1 mkILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~eAl~~l~~~~~dlvilD--~~mp~~~G~e~~~~lr~~~~~ 72 (137)
T d1ny5a1 1 MNVLVIEDDKVFRGLLEEYLSMK------GIKVESAERGKEAYKLLSEKHFNVVLLD--LLLPDVNGLEILKWIKERSPE 72 (137)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHH------TCEEEEESSHHHHHHHHHHSCCSEEEEE--SBCSSSBHHHHHHHHHHHCTT
T ss_pred CEEEEEecCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHhhccccccchHH--HhhhhhhHHHHHHHHHHhCCC
Confidence 47999998888888899999998 9988764321111222333479999872 11233333 245666666678
Q ss_pred Ccee-ehhH
Q 037843 92 MPLF-CMGL 99 (203)
Q Consensus 92 ~Pil-ClG~ 99 (203)
.||+ +-|+
T Consensus 73 ~piI~lT~~ 81 (137)
T d1ny5a1 73 TEVIVITGH 81 (137)
T ss_dssp SEEEEEEET
T ss_pred CCEEEEECC
Confidence 9999 6554
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.12 Score=34.09 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=48.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-HHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-SFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i~~~~~~ 91 (203)
+||+|||-...+...+.+.|+.. |+.+.....-..-.+.+....||.||+-=. .|.-.+. +.+.+++....
T Consensus 1 mrILvVDDd~~~~~~l~~~L~~~------G~~v~~a~~g~eal~~l~~~~~dliilD~~--mP~~~G~e~~~~i~~~~~~ 72 (119)
T d2pl1a1 1 MRVLVVEDNALLRHHLKVQIQDA------GHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVS 72 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhcccceeehhcc--CCCchhHHHHHHHHhcCcc
Confidence 47999998888888899999998 998876533111123334457999988211 2332332 35556665567
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 73 ~pvi 76 (119)
T d2pl1a1 73 LPIL 76 (119)
T ss_dssp SCEE
T ss_pred cceE
Confidence 9998
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=94.06 E-value=0.092 Score=34.77 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--C
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL--G 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~--~ 89 (203)
+||+|||....+...+.+.|+.. |+.+.....-..-.+.+....||.||+-- ..|...| .+.+.+++. .
T Consensus 2 krILiVDD~~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~~~~~~~dlil~D~--~mp~~dG~el~~~ir~~~~~ 73 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEAQ------GYETLQTREGLSALSIARENKPDLILMDI--QLPEISGLEVTKWLKEDDDL 73 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHHHHCCSEEEEES--BCSSSBHHHHHHHHHHSTTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhCCCCEEEEEe--ccCCCcHHHHHHHHHhCCCc
Confidence 68999998887888888999998 99887543211112223334789988821 1233333 245666663 3
Q ss_pred CCCcee-ehh
Q 037843 90 PTMPLF-CMG 98 (203)
Q Consensus 90 ~~~Pil-ClG 98 (203)
.++|++ +-+
T Consensus 74 ~~iPii~lt~ 83 (123)
T d1mb3a_ 74 AHIPVVAVTA 83 (123)
T ss_dssp TTSCEEEEC-
T ss_pred CCCCeEEEEE
Confidence 678988 544
|
| >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Ydr533Cp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.84 E-value=0.013 Score=44.26 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=34.1
Q ss_pred cCCCEEEECCCCCCCCC---cchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 61 KKPRGVVISPGPGAPQE---SGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~---~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+||+|+|+||.+...+ ...+.+++++ +++++||- |-|-++|+.+
T Consensus 96 ~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~ 146 (236)
T d1qvwa_ 96 DDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL 146 (236)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence 47999999999886443 3345677777 47889998 9999887654
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=93.83 E-value=0.12 Score=33.96 Aligned_cols=80 Identities=16% Similarity=0.356 Sum_probs=50.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
++||+|||-.......+.++|+.. |+.+...-.+. .-.+.+....||.||+- ...|...+ .+.+.+++..
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~------g~~v~~~a~~~~~al~~~~~~~~dliilD--~~mp~~~G~e~~~~ir~~~ 72 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKA------GYEVAGEATNGREAVEKYKELKPDIVTMD--ITMPEMNGIDAIKEIMKID 72 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHCCSEEEEE--CSCGGGCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CCceEEEECCHHHHHHHHHhccCCEEEEe--cCCCCCCHHHHHHHHHHhC
Confidence 368999998877788888999888 98875332221 11233334479999982 12233333 2456666666
Q ss_pred CCCcee-ehhH
Q 037843 90 PTMPLF-CMGL 99 (203)
Q Consensus 90 ~~~Pil-ClG~ 99 (203)
.+.|++ +-|+
T Consensus 73 ~~~pvi~ls~~ 83 (118)
T d1u0sy_ 73 PNAKIIVCSAM 83 (118)
T ss_dssp TTCCEEEEECT
T ss_pred CCCcEEEEEcc
Confidence 789998 6544
|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Flavodoxin FldA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.76 E-value=0.044 Score=39.49 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=46.4
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC-cchHHHHHHH
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE-SGISFRTVLE 87 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~-~~~~~~~i~~ 87 (203)
|.+|+|| ....+.+..+++.+.+-. ....|++++++...+.+.+++. ++|+||| |.|-.... ...+..++.+
T Consensus 1 M~kilivy~S~~G~T~~~A~~ia~g~-~~~~g~~v~~~~~~~~~~~dl~--~~d~iii-GsPty~g~~~~~~~~fld~ 74 (184)
T d2arka1 1 MGKVLVIYDTRTGNTKKMAELVAEGA-RSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDD 74 (184)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHH-HTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHH
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHhh-hhccCceEEEeecccccccchh--hCcEEEE-ecCccccccCHHHHHHHHH
Confidence 5678777 455567888888775521 2223899988887778888887 5799999 65543222 2233444444
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=93.64 E-value=0.11 Score=35.28 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=48.1
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
|+|+|||-.......+.++|+.. |+.+.....-..-.+.+....||.||+ - -..|...| .+.+.+++...+
T Consensus 1 P~ILiVDDd~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlil~-D-~~mP~~~G~el~~~lr~~~~~ 72 (140)
T d1qkka_ 1 PSVFLIDDDRDLRKAMQQTLELA------GFTVSSFASATEALAGLSADFAGIVIS-D-IRMPGMDGLALFRKILALDPD 72 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHTCCTTCCSEEEE-E-SCCSSSCHHHHHHHHHHHCTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHC------CCEEEEeCChHHHHHHHhccCcchHHH-h-hccCCCCHHHHHHHHHHhCCC
Confidence 68999998877888888999988 998876532111111222336898777 1 12233333 245666776678
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
+||+
T Consensus 73 ~pvI 76 (140)
T d1qkka_ 73 LPMI 76 (140)
T ss_dssp SCEE
T ss_pred CcEE
Confidence 9999
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.17 Score=33.31 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=47.8
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--C
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL--G 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~--~ 89 (203)
+||+|||-.......+..+|+.. |+.+.....-..-.+.+....||.||+-=. .|...+ .+.+.+++. .
T Consensus 1 KkILiVDD~~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~l~~~~~dlil~D~~--mp~~~G~~l~~~lr~~~~~ 72 (121)
T d1zesa1 1 RRILVVEDEAPIREMVCFVLEQN------GFQPVEAEDYDSAVNQLNEPWPDLILLDWM--LPGGSGIQFIKHLKRESMT 72 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEECSHHHHHHHSSSSCCSEEEECSS--CTTSCHHHHHHHHHHSTTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC------CCEEEEECChHHHHHHHHccCCCEEEeecC--CCCCCHHHHHHHHHhCccC
Confidence 58999998887888899999998 998776432111122233347998888211 233333 245666653 4
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
.++|++
T Consensus 73 ~~~pvi 78 (121)
T d1zesa1 73 RDIPVV 78 (121)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 679998
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=93.14 E-value=0.45 Score=32.27 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=37.6
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~ 73 (203)
+.+|+|| ....+++..+++.+.+...+ .|+.+.+++....+.++... .++|+||| |+|-
T Consensus 2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~--~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~-Gspt 63 (152)
T d1e5da1 2 TNKVVIFYDSMWHSTEKMARVLAESFRD--EGCTVKLMWCKACHHSQIMSEISDAGAVIV-GSPT 63 (152)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCC
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHHHhh--CCCEEEEeecccCChhhhccchhhCCEEEE-eccc
Confidence 4678888 55567888888777553211 28899888765444443221 26899999 5543
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=92.83 E-value=0.14 Score=33.72 Aligned_cols=79 Identities=10% Similarity=0.010 Sum_probs=50.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
..||+|||-.......+.++|+.. |+.+........-.+.+.. ..||.||+--. .|...| .+.+.+++..
T Consensus 2 p~rILvVdDd~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~~dliilD~~--lp~~~G~el~~~ir~~~ 73 (118)
T d2b4aa1 2 PFRVTLVEDEPSHATLIQYHLNQL------GAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQT 73 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSS
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc------CCCeEEECCHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 368999998888888899999998 9998876431111222322 25899998221 122223 2345555545
Q ss_pred CCCcee-ehh
Q 037843 90 PTMPLF-CMG 98 (203)
Q Consensus 90 ~~~Pil-ClG 98 (203)
.+.||+ +-|
T Consensus 74 ~~~pii~lt~ 83 (118)
T d2b4aa1 74 KQPSVLILTT 83 (118)
T ss_dssp SCCEEEEEES
T ss_pred CCCcEEEEEC
Confidence 678998 744
|
| >d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.54 E-value=0.14 Score=36.54 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-------------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-------------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-------------------~~~~~l~~~~~dgiil~GG 71 (203)
.|||+||= ...+++..+++++.+-.. ..|+++++++... ...+++. ++|+||| |+
T Consensus 1 ~~Kvliiy~S~~GnT~~la~~i~~g~~--~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~D~ii~-gs 75 (196)
T d2a5la1 1 SPYILVLYYSRHGATAEMARQIARGVE--QGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GS 75 (196)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHH--HTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHh--hcCCEEEEEeccccchHHHHhccccccccccccchhhhh--hcCEEEE-ec
Confidence 37898883 333567777776655322 2288998876532 1355665 6799999 66
Q ss_pred CC
Q 037843 72 PG 73 (203)
Q Consensus 72 ~~ 73 (203)
|-
T Consensus 76 P~ 77 (196)
T d2a5la1 76 PT 77 (196)
T ss_dssp EC
T ss_pred ch
Confidence 54
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=92.47 E-value=0.35 Score=30.72 Aligned_cols=77 Identities=21% Similarity=0.128 Sum_probs=49.7
Q ss_pred CCCcEEEEeCCchHH--------HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHH
Q 037843 11 DKNPIVVIDNYDSFT--------YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISF 82 (203)
Q Consensus 11 ~~~~i~iid~~~~~~--------~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~ 82 (203)
|+.||+||--+.|.- ..+.+.|++. |.++..+..+.....++...++|.++. -=.|.+.+.+.+.
T Consensus 1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~------~~~v~~i~~~~~~~~~~~~~~~d~vF~-~lHG~~GEdG~iQ 73 (96)
T d1iowa1 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREG------GIDAYPVDPKEVDVTQLKSMGFQKVFI-ALHGRGGEDGTLQ 73 (96)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT------TCEEEEECTTTSCGGGTTTTTEEEEEE-CCCSTTTSSSHHH
T ss_pred CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHc------CeeEeeecCccccchhhhccCceeEEE-eccCcchhccHHH
Confidence 466899996554431 3456677777 999888766544455555556777654 3344556777776
Q ss_pred HHHHHhCCCCcee-e
Q 037843 83 RTVLELGPTMPLF-C 96 (203)
Q Consensus 83 ~~i~~~~~~~Pil-C 96 (203)
.++..+. +|.- |
T Consensus 74 ~~le~l~--IPytGs 86 (96)
T d1iowa1 74 GMLELMG--LPYTGS 86 (96)
T ss_dssp HHHHHHT--CCBSSC
T ss_pred HHHHHcC--CCccCC
Confidence 6666655 8887 5
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.38 E-value=0.1 Score=34.35 Aligned_cols=77 Identities=14% Similarity=0.273 Sum_probs=47.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
+||+|||-.......+.+.|+.. |+.+.....-....+.+....||.||+- ...|...+ .+.+.+++. .+
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~~~~~~~dlillD--~~mp~~~G~~~~~~i~~~-~~ 71 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTKE------GYEVVTAFNGREALEQFEAEQPDIIILD--LMLPEIDGLEVAKTIRKT-SS 71 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEC--SSCSSSCHHHHHHHHHTT-CC
T ss_pred CEEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhcCCCEEEec--cccCCCCccHHHHHHHhC-CC
Confidence 57999998877788888999998 9998765322112233334479999982 12233333 234444443 56
Q ss_pred Ccee-ehh
Q 037843 92 MPLF-CMG 98 (203)
Q Consensus 92 ~Pil-ClG 98 (203)
+|++ +-|
T Consensus 72 ~pvI~lt~ 79 (117)
T d2a9pa1 72 VPILMLSA 79 (117)
T ss_dssp CCEEEEES
T ss_pred CCEEEEec
Confidence 8988 433
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=91.67 E-value=0.43 Score=31.35 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=47.4
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.+|+|||-...+...+.++|+.. |+.+.....-..-.+.+....||.||+== ..|.-.| .+.+.+++...+
T Consensus 4 ~~ILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~~~~~~~dlvi~D~--~mp~~~G~e~~~~lr~~~~~ 75 (123)
T d1dbwa_ 4 YTVHIVDDEEPVRKSLAFMLTMN------GFAVKMHQSAEAFLAFAPDVRNGVLVTDL--RMPDMSGVELLRNLGDLKIN 75 (123)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHGGGCCSEEEEEEC--CSTTSCHHHHHHHHHHTTCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhhcCCcEEEEec--cCccccchHHHHHHHhcCCC
Confidence 58999998888888899999998 99876543211112223334678777611 1122233 245666766667
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 76 ~~iI 79 (123)
T d1dbwa_ 76 IPSI 79 (123)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 8888
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.33 E-value=0.17 Score=34.04 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=49.5
Q ss_pred ccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHH
Q 037843 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTV 85 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i 85 (203)
+.+-...||||||-...+...+.+.|+.. |+.+.....-..-.+ +...+||.|++- -..|.-.| .+.+.|
T Consensus 2 m~d~~g~rILvVDD~~~~~~~l~~~L~~~------G~~v~~a~~g~eal~-~l~~~~dlillD--~~mP~~dG~el~~~i 72 (134)
T d1dcfa_ 2 MSNFTGLKVLVMDENGVSRMVTKGLLVHL------GCEVTTVSSNEECLR-VVSHEHKVVFMD--VCMPGVENYQIALRI 72 (134)
T ss_dssp CCCCTTCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHH-HCCTTCSEEEEE--CCSSTTTTTHHHHHH
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHH-HhhcCCCeEEEE--eccCCCchHHHHHHH
Confidence 34445789999997777777888999999 998876543111112 223378988871 12233333 244556
Q ss_pred HH-h----CCCCcee-ehh
Q 037843 86 LE-L----GPTMPLF-CMG 98 (203)
Q Consensus 86 ~~-~----~~~~Pil-ClG 98 (203)
++ . ....||+ +-|
T Consensus 73 r~~~~~~~~~~~~ii~lT~ 91 (134)
T d1dcfa_ 73 HEKFTKQRHQRPLLVALSG 91 (134)
T ss_dssp HHHHC-CCSCCCEEEEEES
T ss_pred HHhcccccCCCCeEEEEeC
Confidence 54 2 2346776 644
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=91.15 E-value=0.41 Score=31.90 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=34.5
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+|+|| ....+++..+++.+.+... ..|+.+++++..+.+++++. ++|+|||
T Consensus 1 ~V~IvY~S~tGnTe~~A~~ia~~l~--~~g~~v~~~~~~~~~~~~l~--~~d~ii~ 52 (137)
T d2fz5a1 1 MVEIVYWSGTGNTEAMANEIEAAVK--AAGADVESVRFEDTNVDDVA--SKDVILL 52 (137)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHH--HTTCCEEEEETTSCCHHHHH--TCSEEEE
T ss_pred CEEEEEECCChHHHHHHHHHHHHHH--hcCCceEEeehhhHHHhhhh--ccceEEE
Confidence 45555 4445677777766654321 12889988887767788887 5799998
|
| >d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: MoeA, central domain species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]
Probab=90.38 E-value=0.29 Score=33.64 Aligned_cols=58 Identities=26% Similarity=0.269 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCcccHHHH----hc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELTVAEL----KR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~~~~l----~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+..++++. |..+.... .| +.+.+ .. .++|.||.+||.+ +.+.+...+.+.++
T Consensus 26 dsn~~~l~~~l~~~------G~~v~~~~~v~D--d~~~i~~~i~~~~~~~DliIttGG~s-~g~~D~~~~~l~~~ 91 (148)
T d1uz5a3 26 DINGRALCDAINEL------GGEGIFMGVARD--DKESLKALIEKAVNVGDVVVISGGAS-GGTKDLTASVIEEL 91 (148)
T ss_dssp CCHHHHHHHHHHHH------TSEEEEEEEECS--SHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHHHH
T ss_pred eCChHHHHHhhhcc------cccceeeeeecc--HHHHHHHHHHhhhccccEEEECCCcc-cchhhHHHHHHHHc
Confidence 35677888999999 88765432 22 22222 11 1579999999864 44455555555554
|
| >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: Gephyrin, domain 5 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.31 E-value=0.18 Score=34.98 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHH
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTVL 86 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~ 86 (203)
+++...+..++++. |+++.... .|+.. .+.+.. .++|.||.+||.+. .+.+.+.+.+.
T Consensus 26 dsN~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliittGG~s~-g~~D~~~~~l~ 89 (155)
T d2ftsa3 26 DSNRSTLLATIQEH------GYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSM-GEKDYLKQVLD 89 (155)
T ss_dssp CCHHHHHHHHHHTT------TCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSS-SCCHHHHHHHH
T ss_pred echHHHHHHHhccc------ccceEEEEEecCchhHHHHHHHHhhcccCEEEEeccccC-CcchhhHHHHH
Confidence 35678899999998 88765432 23211 111211 25899999999753 44444444443
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.30 E-value=0.25 Score=32.31 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=45.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-HHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-SFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i~~~~~~ 91 (203)
.||+|||-...+...+.++|+.. |+.+..........+.+....||.|++-=. .|...+. +.+.++. ...
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~~a~~~~~~~~~dliilD~~--mp~~~g~~~~~~~~~-~~~ 72 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQE------GYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RST 72 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhcCCCEEeeehh--hccchhHHHHHHHhc-cCC
Confidence 47999998888888899999998 998876543211223333457999998221 1222221 2233332 456
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 73 ~piI 76 (120)
T d1zgza1 73 VGII 76 (120)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8888
|
| >d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: MoeA, central domain species: Escherichia coli [TaxId: 562]
Probab=90.22 E-value=0.33 Score=33.38 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+...+++. |+++..+..-..+.+++ .. .++|.||.+||. ++.+.+.+.+.+.++
T Consensus 26 dsN~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DivittGG~-s~g~~D~~~~~l~~~ 91 (149)
T d2nqra3 26 DTNRLAVHLMLEQL------GCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV-SVGEADYTKTILEEL 91 (149)
T ss_dssp CCHHHHHHHHHHHT------TCEEEEEEEECSSHHHHHHHHHHHHHHCSEEEECSSS-CSSSCSHHHHHHHHH
T ss_pred ecchHHHHhhhhhc------ceEEEEccccCChHHHHHHHHHhcccccCEEEEcCCc-cCCchHHHHHHHHHc
Confidence 46778888999998 88876543211122222 11 258999999997 456666666666654
|
| >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.03 E-value=0.29 Score=35.13 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-------------------------ccHHHHhccCCCE
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-------------------------LTVAELKRKKPRG 65 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-------------------------~~~~~l~~~~~dg 65 (203)
.+||+||- ...+++..+++.+.+-..+ .|+++++++..+ ...+++. ++|+
T Consensus 2 ~mkilivy~S~~GnT~~la~~ia~g~~~--~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~--~aD~ 77 (201)
T d1ydga_ 2 PVKLAIVFYSSTGTGYAMAQEAAEAGRA--AGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLE--WAEA 77 (201)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHH--HCSE
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHh--cCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhHh--hCCE
Confidence 36788883 2235677777666543111 289998876432 1245555 5799
Q ss_pred EEECCCCC
Q 037843 66 VVISPGPG 73 (203)
Q Consensus 66 iil~GG~~ 73 (203)
||| |+|-
T Consensus 78 ii~-gsPv 84 (201)
T d1ydga_ 78 IVF-SSPT 84 (201)
T ss_dssp EEE-EEEE
T ss_pred eEE-ecce
Confidence 999 5553
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=89.74 E-value=0.28 Score=34.63 Aligned_cols=82 Identities=20% Similarity=0.168 Sum_probs=51.4
Q ss_pred CCCCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc----cCCCEEEECCCCCCC-CCcch
Q 037843 10 NDKNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR----KKPRGVVISPGPGAP-QESGI 80 (203)
Q Consensus 10 ~~~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~----~~~dgiil~GG~~~~-~~~~~ 80 (203)
..++||++- |.++--...+.+.|+.. |++|.....+ .+++++.. .++|.|.||.-.+.- .....
T Consensus 35 gr~pkVlla~~g~D~Hd~G~~~va~~l~~~------G~eVi~lg~~-~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~ 107 (168)
T d7reqa2 35 GRRPRILLAKMGQDGHDRGQKVIATAYADL------GFDVDVGPLF-QTPEETARQAVEADVHVVGVSSLAGGHLTLVPA 107 (168)
T ss_dssp SSCCEEEEECBTTCCCCHHHHHHHHHHHHT------TCEEEECCTT-BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHH
T ss_pred CCCCeEEEEeCCccHHHHHHHHHHHHHHhC------CcceecCCCc-CcHHHHHHHHHccCCCEEEEecCcccchHHHHH
Confidence 346778776 55554456788899998 9998776554 56666542 389999998543321 11223
Q ss_pred HHHHHHHhC-CCCceeehh
Q 037843 81 SFRTVLELG-PTMPLFCMG 98 (203)
Q Consensus 81 ~~~~i~~~~-~~~PilClG 98 (203)
+.+.+++.. .++||+|-|
T Consensus 108 l~~~L~~~g~~~v~VivGG 126 (168)
T d7reqa2 108 LRKELDKLGRPDILITVGG 126 (168)
T ss_dssp HHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHhcCCCCeEEEEeC
Confidence 455666653 456676655
|
| >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: HSP31 (HchA; YedU) species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=0.059 Score=41.50 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=34.6
Q ss_pred CCCEEEECCCCCCCCCc---chHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPGPGAPQES---GISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~---~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
+||+|+++||.|...+. ..+.++++. .+.++||- |-|=.+|..+.
T Consensus 141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~ 191 (279)
T d1n57a_ 141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 191 (279)
T ss_dssp SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcc
Confidence 79999999999876653 335677776 46889998 99998886553
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.16 E-value=0.34 Score=31.70 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=45.2
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
.|+|||-...+...+.+.|+.. |+++.....-..-.+.+....||.||+-= ..|.-.+ .+.+.+++. ...
T Consensus 2 nILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~l~~~~~dliilD~--~mP~~~G~e~~~~ir~~-~~~ 72 (119)
T d1zh2a1 2 NVLIVEDEQAIRRFLRTALEGD------GMRVFEAETLQRGLLEAATRKPDLIILDL--GLPDGDGIEFIRDLRQW-SAV 72 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHHCCSEEEEES--EETTEEHHHHHHHHHTT-CCC
T ss_pred EEEEEECCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhcCCCEEEecc--ccCCCCCchHHHHHHhc-cCC
Confidence 6999998888888899999988 99887653321112333344799988711 1122222 234455543 457
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 73 piI 75 (119)
T d1zh2a1 73 PVI 75 (119)
T ss_dssp CEE
T ss_pred cEE
Confidence 887
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=87.78 E-value=0.46 Score=31.90 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=48.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-HHHHHHHh--C
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-SFRTVLEL--G 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i~~~--~ 89 (203)
.||||||-.......+.+.|+.. |+.+.....-..-.+.+....||.|++- -..|...+. +...++.. .
T Consensus 2 arILiVDD~~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~~~~~~~dlil~D--~~~p~~~G~~~~~~ir~~~~~ 73 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTAE------YYEVSTAMDGPTALAMAARDLPDIILLD--VMMPGMDGFTVCRKLKDDPTT 73 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEE--SCCSSSCHHHHHHHHHHSTTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHC------CCEEEEEccchhhhhhhhcccceeeeee--ccccCCCchHHHHHhhhcccc
Confidence 58999998888888899999998 9988765321111222333479988871 122333332 45666663 4
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
.++||+
T Consensus 74 ~~~piI 79 (139)
T d1w25a1 74 RHIPVV 79 (139)
T ss_dssp TTSCEE
T ss_pred cCCCEE
Confidence 679998
|
| >d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphotyrosine protein phosphatases I-like superfamily: PTS system IIB component-like family: PTS system, Lactose/Cellobiose specific IIB subunit domain: Enzyme IIB-cellobiose species: Escherichia coli [TaxId: 562]
Probab=87.27 E-value=0.89 Score=29.11 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=44.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
+++|+++-..+.-+..+++.+++... ..|.++.+.-......++... ++|.|+++|=. ....+.+++...+
T Consensus 1 kk~IlL~C~~G~STs~l~~km~~~a~--~~~~~~~i~A~~~~~~~~~~~-~~DviLl~PQv------~~~~~~i~~~~~~ 71 (103)
T d1iiba_ 1 KKHIYLFSSAGMSTSLLVSKMRAQAE--KYEVPVIIEAFPETLAGEKGQ-NADVVLLGPQI------AYMLPEIQRLLPN 71 (103)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEEEEGGGHHHHHT-TCSEEEECGGG------GGGHHHHHHHCTT
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHH--HcCCCEEEEEechHHHhhhcc-CCCEEEECHHH------HHHHHHHHHHcCC
Confidence 35788887765556677776655422 227777664322223333332 78999995421 1223445554446
Q ss_pred CceeehhHH
Q 037843 92 MPLFCMGLK 100 (203)
Q Consensus 92 ~PilClG~Q 100 (203)
+|+....++
T Consensus 72 ~pv~vI~~~ 80 (103)
T d1iiba_ 72 KPVEVIDSL 80 (103)
T ss_dssp SCEEECCHH
T ss_pred CCEEEeChH
Confidence 888744444
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.84 E-value=1.4 Score=29.42 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc---cHHHHh--ccCCCEEEECCCC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL---TVAELK--RKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~---~~~~l~--~~~~dgiil~GG~ 72 (203)
+.+|+|| ....+++..+++.+.+... ..|+.+.++..... +..++. -.++|+||| |.|
T Consensus 3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~--~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iii-gsp 66 (148)
T d1vmea1 3 KGKVTVIYDSMYGFVENVMKKAIDSLK--EKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVS 66 (148)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHH--HTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EEC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHH--hCCCeEEEEecccccccchhHhhhhHHHCCEeEE-Eec
Confidence 4677777 6666788887776655321 22888887653322 222221 127899999 443
|
| >d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: NAD kinase-like domain: Inorganic polyphosphate/ATP-NAD kinase PpnK species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.41 E-value=0.5 Score=35.37 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=46.4
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
+|++|+-..++....+.+.+++. +..+.++.. ..++++ ++|.||.-||.| .+...++.+.+.+
T Consensus 1 mr~~iv~k~d~~~k~i~e~l~~~------~~~~~~~~~---~~~~~~--~~D~vi~iGGDG------T~L~a~~~~~~~~ 63 (249)
T d1z0sa1 1 MRAAVVYKTDGHVKRIEEALKRL------EVEVELFNQ---PSEELE--NFDFIVSVGGDG------TILRILQKLKRCP 63 (249)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHT------TCEEEEESS---CCGGGG--GSSEEEEEECHH------HHHHHHTTCSSCC
T ss_pred CeEEEEECCchhHHHHHHHHHhc------CCeEEEecC---cccccc--CCCEEEEECCcH------HHHHHHHHhcCCC
Confidence 47888866666778888899988 898887642 223344 579999999954 3344555555678
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|||
T Consensus 64 Pil 66 (249)
T d1z0sa1 64 PIF 66 (249)
T ss_dssp CEE
T ss_pred cEE
Confidence 998
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=86.29 E-value=1.1 Score=30.19 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=40.5
Q ss_pred ccccCCCCCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 5 LKLSKNDKNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 5 ~~~~~~~~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
++-|+..+++|+||- .+ ..-.++.+.|++. |.++.++..+.....+......|.++++
T Consensus 2 ~~~~~~~~~kI~iIGg~G-~mG~~la~~L~~~------G~~V~~~d~~~~~~~~~~~~~~~~v~~~ 60 (152)
T d2pv7a2 2 FKTINSDIHKIVIVGGYG-KLGGLFARYLRAS------GYPISILDREDWAVAESILANADVVIVS 60 (152)
T ss_dssp CCCSCTTCCCEEEETTTS-HHHHHHHHHHHTT------TCCEEEECTTCGGGHHHHHTTCSEEEEC
T ss_pred CcccCCCCCeEEEEcCCC-HHHHHHHHHHHHc------CCCcEecccccccccchhhhhccccccc
Confidence 456778889999999 54 4677888999888 9999887654322222222367888874
|
| >d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MogA-like domain: MoaB species: Escherichia coli [TaxId: 562]
Probab=86.26 E-value=0.98 Score=31.48 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=41.4
Q ss_pred cCCCC-CcEEEEeCC-------chHHHHHHHHHHHhhhhhcCCceEE---EEeCCccc-HHHH----hccCCCEEEECCC
Q 037843 8 SKNDK-NPIVVIDNY-------DSFTYNLCQYMGELELELSQGYHFE---VYRNDELT-VAEL----KRKKPRGVVISPG 71 (203)
Q Consensus 8 ~~~~~-~~i~iid~~-------~~~~~~l~~~l~~~~~~~~~g~~~~---v~~~~~~~-~~~l----~~~~~dgiil~GG 71 (203)
+.+.+ .||+||--. |.+...+..++++. |+++. +++.+... .+.+ ...++|.||.+||
T Consensus 3 ~~~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~------G~~v~~~~iv~Dd~~~~~~~l~~~~~~~~~dlIiTtGG 76 (170)
T d1mkza_ 3 STEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEA------GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGG 76 (170)
T ss_dssp CSSCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCCcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHC------CCEEEEeeeeCCCHHHHHHHHHhhhhcccceEEEEeee
Confidence 44554 588888432 34556788899988 88864 33322111 1111 2236799999898
Q ss_pred CCCCCCcchHHHHHHH
Q 037843 72 PGAPQESGISFRTVLE 87 (203)
Q Consensus 72 ~~~~~~~~~~~~~i~~ 87 (203)
.|. .+.+...+.+..
T Consensus 77 tg~-g~~D~t~ea~~~ 91 (170)
T d1mkza_ 77 TGL-TEGDQAPEALLP 91 (170)
T ss_dssp CSS-STTCCHHHHHGG
T ss_pred ecc-ccccccHHHHHh
Confidence 763 333344444444
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=85.85 E-value=1.1 Score=30.04 Aligned_cols=80 Identities=15% Similarity=0.024 Sum_probs=49.8
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHH
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISF 82 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~ 82 (203)
+++|++= |.++--..++...|+.. |+++..+-.+ .+.+++. ..++|.|.+|...+.-. ....+.
T Consensus 3 k~kVvi~~~~gD~H~lG~~mva~~l~~~------G~~V~~LG~~-~p~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~ 75 (137)
T d1ccwa_ 3 KKTIVLGVIGSDCHAVGNKILDHAFTNA------GFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLR 75 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHT------TCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHH
T ss_pred CCEEEEEecCCChhHHHHHHHHHHHHHC------CCeEEecccc-cCHHHHHHHHHhcCCCEEEEeeccccchHHHHHHH
Confidence 3555552 55554467788899998 9999877654 4555543 34899999977544211 112345
Q ss_pred HHHHHh-CCCCceeehh
Q 037843 83 RTVLEL-GPTMPLFCMG 98 (203)
Q Consensus 83 ~~i~~~-~~~~PilClG 98 (203)
+.+++. ..++||+|-|
T Consensus 76 ~~l~~~~~~~i~iivGG 92 (137)
T d1ccwa_ 76 QKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHTTCTTCEEEEEE
T ss_pred HHHHHhccCCCEEEEeC
Confidence 566664 3678988433
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=84.97 E-value=0.6 Score=30.85 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=44.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~- 88 (203)
+.||+|||-.......+.+.|+.. |+. +.....-..-.+-+....||.||+--. .|.-.+ .+.+.+++.
T Consensus 6 ~~kILiVDD~~~~~~~l~~~L~~~------g~~~v~~a~~~~~al~~l~~~~~dlii~D~~--mP~~~G~el~~~lr~~~ 77 (129)
T d1p6qa_ 6 KIKVLIVDDQVTSRLLLGDALQQL------GFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANP 77 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTT------TCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhCCCCeEEeeee--cCCCChHHHHHHHHhCc
Confidence 568999998777777788899888 885 333211011122333446898887221 233333 234555552
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
..+.|++
T Consensus 78 ~~~~~pii 85 (129)
T d1p6qa_ 78 ATKKAAFI 85 (129)
T ss_dssp TSTTCEEE
T ss_pred ccCCCeEE
Confidence 3578887
|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Positive regulator of the amidase operon AmiR domain: Positive regulator of the amidase operon AmiR species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.80 E-value=0.88 Score=31.74 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=46.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
..+|+|+|-...+...+...|+.+ |+++....... +.+ ...||.|++- -..|...+.....++.....
T Consensus 11 ~~~iLvvdd~~~~~~~l~~~L~~~------G~~v~~~~~~~---~al-~~~~Dlvl~D--~~mp~~~~~~~~~~~~~~p~ 78 (189)
T d1qo0d_ 11 ELQVLVLNPPGEVSDALVLQLIRI------GCSVRQCWPPP---EAF-DVPVDVVFTS--IFQNRHHDEIAALLAAGTPR 78 (189)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHH------TCEEEEECSCC---SSC-SSCCSEEEEE--CCSSTHHHHHHHHHHHSCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CCcceecCCHH---Hhc-cCCCCEEEEc--CCCCCcHHHHHHHHHHcCCC
Confidence 368999998888899999999999 99988764321 122 2378988872 11222222233334444567
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
+||+
T Consensus 79 ~pvI 82 (189)
T d1qo0d_ 79 TTLV 82 (189)
T ss_dssp CEEE
T ss_pred CCEE
Confidence 9988
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.16 E-value=2.2 Score=27.86 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=46.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHh-----ccCCCEEEECCCCCCCCCcc-hHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELK-----RKKPRGVVISPGPGAPQESG-ISFRTV 85 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~-----~~~~dgiil~GG~~~~~~~~-~~~~~i 85 (203)
-||+|+|-...+...+.+.|+.. |+. +.....-....+.+. ...||.|++=- ..|.-.| .+.+.+
T Consensus 2 irVLvVDD~~~~~~~l~~~L~~~------g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~--~mP~~dG~el~~~i 73 (128)
T d2r25b1 2 VKILVVEDNHVNQEVIKRMLNLE------GIENIELACDGQEAFDKVKELTSKGENYNMIFMDV--QMPKVDGLLSTKMI 73 (128)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT------TCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECS--CCSSSCHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHc------CCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEe--CCCCCCHHHHHHHH
Confidence 58999998777778888999988 885 554322111112121 23689999821 1233233 345666
Q ss_pred HH-hCCCCcee-ehh
Q 037843 86 LE-LGPTMPLF-CMG 98 (203)
Q Consensus 86 ~~-~~~~~Pil-ClG 98 (203)
++ .....||+ +-|
T Consensus 74 r~~~~~~~piI~lT~ 88 (128)
T d2r25b1 74 RRDLGYTSPIVALTA 88 (128)
T ss_dssp HHHSCCCSCEEEEES
T ss_pred HHccCCCCeEEEEEC
Confidence 65 45678988 644
|
| >d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: MoeA, central domain species: Pyrococcus horikoshii, PH1647 [TaxId: 53953]
Probab=84.08 E-value=0.43 Score=32.57 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------cCCCEEEECCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR------KKPRGVVISPGPG 73 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~~~dgiil~GG~~ 73 (203)
+++...+...+++. |+++..+..-..+.+++.. .++|.||.+||.+
T Consensus 30 dsN~~~L~~~l~~~------G~~v~~~~iv~Dd~~~i~~~l~~~~~~~DlvIttGG~s 81 (144)
T d1wu2a3 30 ETNSIMLQGLVEKF------FGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA 81 (144)
T ss_dssp CCHHHHHHHHHHHT------TCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred ecCchHHhhhhccc------CcceeEEEEecchHHHHHHHHHHhhhcccEEEEccccc
Confidence 45667788899998 8877644211112333221 2689999999975
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.62 E-value=1 Score=30.09 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=33.2
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCC
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPG 71 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG 71 (203)
+.+++|+|.|.-+ ....+.|++. |...........+.+++.. .++|+|++.+.
T Consensus 2 k~kmKILv~d~i~---~~a~~~L~~~------g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~ 56 (132)
T d1sc6a2 2 KDKIKFLLVEGVH---QKALESLRAA------GYTNIEFHKGALDDEQLKESIRDAHFIGLRSR 56 (132)
T ss_dssp CSSCCEEECSCCC---HHHHHHHHHT------TCCCEEECSSCCCHHHHHHHTTSCSEEEECSS
T ss_pred CCCCEEEEECCCC---HHHHHHHHhC------CCEEEEeCCCCCCHHHHHHhhcCCcEEEEecc
Confidence 4568999999743 3455678887 7654333322345666543 27899988554
|
| >d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Aspartyl dipeptidase PepE domain: Aspartyl dipeptidase PepE species: Salmonella typhimurium [TaxId: 90371]
Probab=83.24 E-value=0.65 Score=34.13 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=47.3
Q ss_pred CCcEEEEeCC------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC----CcchH
Q 037843 12 KNPIVVIDNY------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ----ESGIS 81 (203)
Q Consensus 12 ~~~i~iid~~------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~----~~~~~ 81 (203)
.++|++|-.- +.+.....+.++.+ |+++..+...+...+.+. +.|+|+++||.-... ....+
T Consensus 31 ~~~i~~IPtAs~~~~~~~y~~~~~~~~~~l------~~~v~~l~~~~~~~~~l~--~ad~I~v~GGn~~~l~~~l~~t~l 102 (229)
T d1fyea_ 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPL------GVNVTGIHRVADPLAAIE--KAEIIIVGGGNTFQLLKESRERGL 102 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGG------TCEEEEGGGSSCHHHHHH--HCSEEEECCSCHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCCchhHHHHHHHHHhhhc------CceeEEecccccHHHHHh--hCCEEEEcCCCHHHHHHHHHhCCH
Confidence 4689999432 22344455566666 888887754333345555 469999988842110 01112
Q ss_pred HHHHHH-hCCCCcee--ehhHHHH
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCI 102 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qll 102 (203)
.+.|++ +.++.++. --|.-++
T Consensus 103 ~~~l~~~~~~G~vi~G~SAGA~v~ 126 (229)
T d1fyea_ 103 LAPMADRVKRGALYIGWSAGANLA 126 (229)
T ss_dssp HHHHHHHHHTTCEEEEETHHHHHT
T ss_pred HHHHHHHHHcCCeEEEeChhHhhc
Confidence 445555 45778888 4454333
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Probab=80.73 E-value=1.6 Score=29.41 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=31.5
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|||+|+ ....+.+..+++.+.+...+. |+.+.++...+.+..++.. ++|.|||
T Consensus 1 pkv~I~Y~S~tG~te~~A~~i~~~l~~~--g~~v~~~~~~~~~~~~~~~-~~~~vii 54 (147)
T d1f4pa_ 1 PKALIVYGSTTGNTEYTAETIARELADA--GYEVDSRDAASVEAGGLFE-GFDLVLL 54 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHH--TCEEEEEEGGGCCSTTTTT-TCSEEEE
T ss_pred CcEEEEEECCChhHHHHHHHHHHHHHHC--CCeEEEEeccccchhhhhc-ccCeEEE
Confidence 566666 455566776666554432111 8999888765454444432 5788877
|
| >d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MogA-like domain: MoaB species: Bacillus cereus [TaxId: 1396]
Probab=80.39 E-value=2.8 Score=28.38 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHh---c-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELK---R-KKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~---~-~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
.|.+...+..+|++. |+++.... .|+.. .+.+. + ..+|.||.+||.+. ...+...+.+.++. -
T Consensus 18 ~D~ngp~L~~~l~~~------G~~v~~~~iv~D~~~~i~~~l~~~~~~~~~DlIvTtGGts~-g~~D~t~~a~~~~~--~ 88 (155)
T d1y5ea1 18 TDKSGQLLHELLKEA------GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI-TKRDVTIEAVSALL--D 88 (155)
T ss_dssp TCHHHHHHHHHHHHH------TCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS-STTCCHHHHHHTTC--S
T ss_pred cCccHHHHHHHHHhc------CCEEEEeeeecchHHHHHHHHHHHHhccCCCEEEEeeeeec-ccccccchhhhhhc--c
Confidence 355667899999998 88775332 23221 12222 2 36799999888753 33344445555542 1
Q ss_pred cee-ehhHHHHHHH
Q 037843 93 PLF-CMGLKCIGEA 105 (203)
Q Consensus 93 Pil-ClG~Qlla~a 105 (203)
-.+ ..|+++-...
T Consensus 89 ~~~~~~~~~~~~~~ 102 (155)
T d1y5ea1 89 KEIVGFGELFRMIS 102 (155)
T ss_dssp EECHHHHHHHHHHH
T ss_pred ccchhhhhhhhccc
Confidence 222 5566555443
|