Citrus Sinensis ID: 037844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MSDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI
Secondary Structure (PSIPRED)
ccccccccccccccEEEccccccEEEEcccccccccccccEEEccccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccEEEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEEcccccccccccHHHHHHHccEEEEcccccccccccHHHHHHHccEEEEcccccccccc
Coil and Loop (DISEMBL)
msdqaekkqrnhvikldlpssclqdsinsssglFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSlsgglpvstkYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSqnsfrgri
Flexible Loop (DISEMBL)
msdqaekkqrnhvikldlpsscLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIilhlsqnsfrgri
Low Complexity Region (SEG)
MSDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIInlsrlsylnlfysslsgglPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI
Disordered region (IsUnstruct)
*********************CLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLS********
Disordered Region (DISOPRED)
*SDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR*
Disordered Region (DISEMBL)
***********HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI
Disordered Region (DISPRO)
********QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.944	0.140	0.325	6e-07
O48788	658	Probable inactive recepto	no	no	0.865	0.165	0.378	2e-06
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.936	0.103	0.347	3e-06
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.738	0.091	0.340	9e-06
Q9S7I6	1151	LRR receptor-like serine/	no	no	0.777	0.085	0.353	2e-05
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.888	0.111	0.387	2e-05
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.904	0.178	0.324	3e-05
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.722	0.088	0.326	5e-05
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.690	0.078	0.363	7e-05
C0LGN2	1020	Probable leucine-rich rep	no	no	0.857	0.105	0.357	8e-05

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 7   KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSY 66
             +   VI LD+P++ L + + ++S LFKL +L+ L L      G EI   + NLS L+ 
Sbjct: 80  NDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTL 138

Query: 67  LNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           +NL+++   G +P S   L  L+ L +        I   L NL++L+ L L  N   G+I
Sbjct: 139 VNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKI 198

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           L LP + L   I S S L +L  L+ L L  N+ SG +I     NL+ L  L L ++  S
Sbjct: 71  LRLPGTGLVGQIPSGS-LGRLTELRVLSLRSNRLSG-QIPSDFSNLTHLRSLYLQHNEFS 128

Query: 76  GGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           G  P S   L +L  L I   NF   I F + NLT L  L L  N F G +
Sbjct: 129 GEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNL 179

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 6   EKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLS 65
           E KQ   +  LD   + L+  I    G  K   LK L L  N FSG+ +   ++NL +L 
Sbjct: 375 EIKQCGSLDVLDFEGNSLKGQIPEFLGYMK--ALKVLSLGRNSFSGY-VPSSMVNLQQLE 431

Query: 66  YLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125
            LNL  ++L+G  PV    L SL  L +    F   +   + NL+ L  L+LS N F G 
Sbjct: 432 RLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGE 491

Query: 126 I 126
           I
Sbjct: 492 I 492

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 33  LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA 92
           L +L  L+  IL +N+F G  I  +  N++ L YL+L    LSG +P     L+SL+ L 
Sbjct: 208 LGQLPSLETAILGYNEFKG-PIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLL 266

Query: 93  IIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           + + NF   I   + ++T L +L  S N+  G I
Sbjct: 267 LYENNFTGTIPREIGSITTLKVLDFSDNALTGEI 300

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9S7I6|RPK2_ARATH LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 28  NSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87
           N  S +  L  L+ L L FN FSG EI + I  + +L  L+L  + ++G LP     LR+
Sbjct: 135 NLPSVIMSLTGLRVLSLPFNSFSG-EIPVGIWGMEKLEVLDLEGNLMTGSLPDQFTGLRN 193

Query: 88  LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           L+V+ +        I   L+NLT+L IL+L  N   G +
Sbjct: 194 LRVMNLGFNRVSGEIPNSLQNLTKLEILNLGGNKLNGTV 232

Key regulator of anther development (e.g. lignification pattern), including tapetum degradation during pollen maturation (e.g. germination capacity). Together with RPK1, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 12  HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFY 71
           HV  LDL  S L  S   SS +  L  L+ L L  N+ SG  I  +I NL  L +LNL  
Sbjct: 70  HVTSLDL--SGLNLSGTLSSDVAHLPLLQNLSLAANQISG-PIPPQISNLYELRHLNLSN 126

Query: 72  SSLSGGLPVS-TKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           +  +G  P   +  L +L+VL +   N    +   L NLTQL  LHL  N F G+I
Sbjct: 127 NVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKI 182

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 10  RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNL 69
            N VI L  PS  L  +++ S  +  L +L+ ++L  N   G +I  +I  L+RL  L+L
Sbjct: 80  ENFVIGLGTPSQNLSGTLSPS--ITNLTNLRIVLLQNNNIKG-KIPAEIGRLTRLETLDL 136

Query: 70  FYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
             +   G +P S  YL+SL+ L +   +        L N+TQL  L LS N+  G +
Sbjct: 137 SDNFFHGEIPFSVGYLQSLQYLRLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPV 193

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 35  KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAII 94
           +L  L+ +IL +N F G EI  +   L+RL YL+L   +L+G +P S   L+ L  + + 
Sbjct: 219 ELSSLETIILGYNGFMG-EIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLY 277

Query: 95  KCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           +     ++   L  +T L+ L LS N   G I
Sbjct: 278 QNRLTGKLPRELGGMTSLVFLDLSDNQITGEI 309

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 39  LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNF 98
           L+ L L  N F G E   ++ N   L+ LNL+ +  +G +P     + SLK L +    F
Sbjct: 254 LQMLDLSGNAFGG-EFPGQVSNCQNLNVLNLWGNKFTGNIPAEIGSISSLKGLYLGNNTF 312

Query: 99  CSRITFLLRNLTQLIILHLSQNSFRGRI 126
              I   L NLT L+ L LS+N F G I
Sbjct: 313 SRDIPETLLNLTNLVFLDLSRNKFGGDI 340

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 15  KLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL 74
           +LDL  + L  SI    G   L+++    LL N+ SG  I  ++ NL+ LS L L Y+ L
Sbjct: 115 ELDLTRNYLNGSIPPEWGASSLLNIS---LLGNRISG-SIPKELGNLTTLSGLVLEYNQL 170

Query: 75  SGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           SG +P     L +LK L +   N    I      LT L  L +S N F G I
Sbjct: 171 SGKIPPELGNLPNLKRLLLSSNNLSGEIPSTFAKLTTLTDLRISDNQFTGAI 222

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
296085015	632	unnamed protein product [Vitis vinifera]	0.952	0.189	0.483	1e-14
296085013	725	unnamed protein product [Vitis vinifera]	0.952	0.165	0.495	2e-14
297745044	813	unnamed protein product [Vitis vinifera]	0.936	0.145	0.415	1e-11
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.738	0.047	0.458	1e-11
296085003	566	unnamed protein product [Vitis vinifera]	0.952	0.212	0.349	1e-11
296085018	1477	unnamed protein product [Vitis vinifera]	0.928	0.079	0.394	1e-11
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.738	0.048	0.447	7e-11
224140505	993	predicted protein [Populus trichocarpa]	0.912	0.115	0.423	4e-09
359485824	973	PREDICTED: receptor-like protein 12-like	0.873	0.113	0.408	8e-09
296083125	656	unnamed protein product [Vitis vinifera]	0.984	0.189	0.373	2e-08

>gi|296085015|emb|CBI28430.3| unnamed protein product [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 67/120 (55%)

Query: 7   KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSY 66
            ++  HVI L L SSCL  SINSSS LF L+HL+ L L  N F+  EI   +  LSRL  
Sbjct: 88  DRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSEIPHGVSQLSRLRI 147

Query: 67  LNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           L L  +S SG LP S   L SL  L I  CNF   +   L +LTQL  L LS N F G I
Sbjct: 148 LYLAGTSYSGELPASMGKLSSLSELDISSCNFTGLVPSSLGHLTQLSYLDLSYNFFSGPI 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085013|emb|CBI28428.3| unnamed protein product [Vitis vinifera]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 69/121 (57%), Gaps = 1/121 (0%)

Query: 7   KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSY 66
            K+  HVI L L SSCL  SINSS+ LF L+HL  L L  N F+  E+  K+  LSRL  
Sbjct: 339 DKETGHVIGLHLASSCLYGSINSSNTLFSLVHLSTLDLSDNDFNYSEVPHKVGQLSRLRS 398

Query: 67  LNLFYSSL-SGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125
           LNL    L SG LP S   L SL VL +  C F   I   L +LTQL IL LS N F G+
Sbjct: 399 LNLSGCGLFSGELPASIGRLVSLTVLDLDSCKFTGMIPSSLSHLTQLSILDLSFNLFTGQ 458

Query: 126 I 126
           I
Sbjct: 459 I 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745044|emb|CBI38636.3| unnamed protein product [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 65/118 (55%)

Query: 7   KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSY 66
            ++  HVI L L SSCL  SINSSS LF L+HL+ L L  N F+  EI   +  LSRL  
Sbjct: 221 DRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSEIPFGVGQLSRLRM 280

Query: 67  LNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
           L++   + +G +P    +L  L  L +    F  +I   + NLTQL  L LS N+F G
Sbjct: 281 LDISSCNFTGLVPSPLGHLPQLSYLDLSNNYFSGQIPSFMANLTQLTYLDLSFNNFSG 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 3/96 (3%)

Query: 32   GLFKLIHLKWLILLFNKF-SGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90
            G+FKL  L+ L L+ N++ +G   L +  N S L YL+L+++S SG LP S  +L SLK 
Sbjct: 1196 GIFKLPSLELLDLMSNRYLTGH--LPEFHNASHLKYLDLYWTSFSGQLPASIGFLSSLKE 1253

Query: 91   LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
            L I  CNF   +   L NLTQL  L LS NSF+G++
Sbjct: 1254 LDICSCNFSGMVPTALGNLTQLTHLDLSSNSFKGQL 1289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085003|emb|CBI28418.3| unnamed protein product [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 72/169 (42%), Gaps = 49/169 (28%)

Query: 7   KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEI------------ 54
            ++  HVI L L SS L  SIN SS LF L+HL+ L L  N F+   I            
Sbjct: 18  DRESGHVIGLHLASSHLYGSINCSSTLFSLVHLRRLDLSDNDFNYSRIPHGVGQLSRLRS 77

Query: 55  -------------------------------------LIKIINLSRLSYLNLFYSSLSGG 77
                                                L +  N S L YL+L+++S SG 
Sbjct: 78  LNLSNSQFSGQIPSKLLALSKLVSLDLSSNPTYLTGHLPEFHNASHLKYLDLYWTSFSGQ 137

Query: 78  LPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           LP S  +L SLK L I  CNF   +   L NLTQL  L LS NSF+G I
Sbjct: 138 LPASIGFLSSLKELDICSCNFSGMVPTALGNLTQLTHLDLSSNSFKGPI 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085018|emb|CBI28433.3| unnamed protein product [Vitis vinifera]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 68/142 (47%), Gaps = 25/142 (17%)

Query: 7    KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSY 66
             ++  HVI L L SSCL  SINSSS LF L+HL+ L L  N F+  EI   +  LSRL  
Sbjct: 872  DRETGHVIGLHLASSCLYGSINSSSTLFSLVHLQRLDLSDNDFNYSEIPFGVGQLSRLRS 931

Query: 67   LNLFYS-------------------------SLSGGLPVSTKYLRSLKVLAIIKCNFCSR 101
            L+L +S                         + SG LP S   L SL  L I  CNF   
Sbjct: 932  LDLSFSGFSGQIPSELLALSKLVFLDLSANPNFSGELPTSIGRLGSLTELDISSCNFTGS 991

Query: 102  ITFLLRNLTQLIILHLSQNSFR 123
            +   L +LTQL  L LS N F+
Sbjct: 992  VPSSLGHLTQLYYLDLSNNHFK 1013

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 32   GLFKLIHLKWLILLFNKF-SGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90
            G+FK   L+ L L+ N++ +G   L +  N S L YL+L+++S SG LP S  +L SLK 
Sbjct: 1175 GIFKXPSLELLDLMSNRYLTGH--LPEFHNASHLKYLDLYWTSFSGQLPASIGFLSSLKE 1232

Query: 91   LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
            L I  CNF   +   L NLTQL  L LS NSF+G++
Sbjct: 1233 LDICSCNFSGXVPTALGNLTQLAHLDLSXNSFKGQL 1268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 12  HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFY 71
           HVI LDL SSCL  SINS+S LF L+ L+ L L  N F+  ++  +I NLSRL  LNL Y
Sbjct: 93  HVIGLDLSSSCLHGSINSNSSLFHLVQLRRLNLSGNDFNNSKMPSEIRNLSRLFDLNLSY 152

Query: 72  SSLSGGLPVSTKYLRSLKVLAIIKCNFCSR---ITFLLRNLTQLIILHLSQNSFRGRI 126
           S+ SG +P     L  L  L +   +   R   +  L+  LT L +LHLS  S    +
Sbjct: 153 SNFSGQIPAEILELSKLVSLDLRWNSLKLRKPGLQHLVEALTNLEVLHLSGVSISAEV 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 65/120 (54%), Gaps = 10/120 (8%)

Query: 7   KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSY 66
            ++  HVI L L SSCL  SINSSS LF L+HL+ L L  N F+  EI   +  LSRL  
Sbjct: 92  DRETGHVIGLHLASSCLYGSINSSSTLFSLVHLQRLDLSDNDFNYSEIPFGVGQLSRLRS 151

Query: 67  LNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITF-------LLRNLTQLIILHLSQ 119
           L+L +S  SG +P     L +L  L  +  +   ++         L++NLT L  LHLSQ
Sbjct: 152 LDLSFSGFSGQIPSE---LLALSKLVFLDLSANPKLQLQKPGLRNLVQNLTHLKKLHLSQ 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083125|emb|CBI22761.3| unnamed protein product [Vitis vinifera]

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 73/174 (41%), Gaps = 50/174 (28%)

Query: 3   DQAEKKQRN-HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINL 61
           D  E    N HVI LDL SSCL  SINSSS LF+L+HL  L L  N F+  +I   +  L
Sbjct: 90  DGVECDTNNGHVIGLDLSSSCLYGSINSSSSLFRLVHLLRLDLSDNDFNYSKIPHGVGQL 149

Query: 62  SRLSYLNLFYS------------------------------------------------S 73
           SRL+ LNL  S                                                S
Sbjct: 150 SRLTSLNLSSSRFSGQISSQILELSKLLKKLHLNEVNISSRVPDFHHTSSLKLLALAGTS 209

Query: 74  LSGGLPVSTKYLRSLKVLAIIKCNFCSR-ITFLLRNLTQLIILHLSQNSFRGRI 126
            SG LP S   L SL  L I  CNF S  I   L  L QL  L LS+NSF G+I
Sbjct: 210 FSGRLPTSIGNLDSLVELNISSCNFTSGLIPSSLGRLIQLTSLDLSRNSFSGQI 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.349	0.059	0.431	2.1e-07
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.309	0.053	0.512	1.2e-06
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.380	0.066	0.416	3.9e-06
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.896	0.139	0.324	7.3e-06
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.896	0.119	0.333	6.3e-05
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.896	0.114	0.316	8.5e-05
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.333	0.042	0.404	0.00024
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.880	0.132	0.339	0.00031
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.896	0.141	0.289	0.00037
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.896	0.158	0.318	0.00041

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 78 (32.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query:    79 PVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122
             P S   L+ LKVL ++ CN   +I   L NL+ L  L LS N F
Sbjct:    67 PDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDF 110

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query:    13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSG 51
             V++LDL SSCL   + S+S LF+L HL+ L L  N  SG
Sbjct:    88 VVELDLMSSCLNGPLRSNSSLFRLQHLQSLELSSNNISG 126

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 77 (32.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query:    79 PVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
             P S   L+ L+VL++  CN   +I   L NLT L  L LS N F G +
Sbjct:   125 PDSIGSLKYLRVLSLGDCNLFGKIPSSLGNLTYLTNLDLSVNDFTGEL 172

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 37/114 (32%), Positives = 48/114 (42%)

Query:    13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIIXXXXXXXXXXXXX 72
             V KL LPS CL  S+  +S LF L HL++L L  N F+   +                  
Sbjct:    73 VTKLQLPSGCLHGSMKPNSSLFGLQHLRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSSN 132

Query:    73 XXXXXXPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                   P S   L  L +L +          F+ +NLT+L IL LS N F G I
Sbjct:   133 GFLGQVPSSFSNLSQLNILDLSHNELTGSFPFV-QNLTKLSILVLSYNHFSGTI 185

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 38/114 (33%), Positives = 50/114 (43%)

Query:    13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIIXXXXXXXXXXXXX 72
             VI+LDL  S L  S +S+S LF+L +L+ L L  N   G EI   I              
Sbjct:   101 VIELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDLDG-EIPSSIGNLSHLTSLHLSYN 159

Query:    73 XXXXXXPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                   P S + L  L  L +    F  +I   + NL+ L  L LS N F G+I
Sbjct:   160 QFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSNQFSGQI 213

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 37/117 (31%), Positives = 52/117 (44%)

Query:    13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLF---NKFSGFEILIKIIXXXXXXXXXX 69
             VI+LDL  SCL+  +NS+S LF+L  L++L  L    N F G +I   +           
Sbjct:    85 VIELDLSFSCLRGQLNSNSSLFRLPQLRFLTTLDLSNNDFIG-QIPSSLETLSNLTTLDL 143

Query:    70 XXXXXXXXXPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                      P S   L  L  +     NF  +I   L  L+ L   +LS N+F GR+
Sbjct:   144 SRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYNNFSGRV 200

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 75 (31.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query:    13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEI 54
             V  LDL  SCL   +  +S LF+L HL+ + L +N F+   I
Sbjct:    99 VTGLDLSCSCLHGRLEPNSSLFRLQHLQSVNLAYNNFTNSPI 140

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 38/112 (33%), Positives = 45/112 (40%)

Query:    13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIIXXXXXXXXXXXXX 72
             VI L+L S     S+ SSS LFKL HL+ L L      G EI   I              
Sbjct:    88 VISLNLVSYIANTSLKSSSSLFKLRHLRHLELSHCNLQG-EIPSSIGNLSHLTYLDLSFN 146

Query:    73 XXXXXXPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
                   PVS   L  L+ + +        I     NLT+L  LHL QN F G
Sbjct:   147 QLVGEFPVSIGNLNQLEYIDLWVNALGGNIPTSFANLTKLSELHLRQNQFTG 198

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00037, P = 0.00037
 Identities = 33/114 (28%), Positives = 45/114 (39%)

Query:    13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIIXXXXXXXXXXXXX 72
             V KL LPS C   ++  +S LF+L  L++L L  N F+   +  +               
Sbjct:    66 VTKLQLPSGCFTGTLKPNSSLFELHQLRYLNLSHNNFTSSSLPSEFSNLTRLEVLSLASS 125

Query:    73 XXXXXXPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                   P S   L  L  L +            +RNLT+L  L LS N F G I
Sbjct:   126 SFTGQVPSSISNLILLTHLNLSHNELTGSFP-PVRNLTKLSFLDLSYNQFSGAI 178

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00041, P = 0.00041
 Identities = 37/116 (31%), Positives = 49/116 (42%)

Query:    11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIIXXXXXXXXXXX 70
             +H+  LDL  +     + SS G   L HL  L L FN+F G +    I            
Sbjct:   169 SHLTFLDLYCNQFSGQVPSSIG--NLSHLTTLELSFNRFFG-QFPSSIGGLSHLTTLNLF 225

Query:    71 XXXXXXXXPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                     P S   L +L  L + K NF  +I   + NL+QL  L LS N+F G I
Sbjct:   226 VNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEI 281

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 33  LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA 92
           L ++  LKW+ L +N  SG EI  +I  L+ L++L+L Y++L+G +P S   L++L+ L 
Sbjct: 208 LGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 93  IIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           + +      I   + +L +LI L LS NS  G I
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 35  KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAII 94
            L  L  L L++N  +G  I   + NL  L YL L+ + LSG +P S   L+ L  L + 
Sbjct: 234 GLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 95  KCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
             +    I  L+  L  L ILHL  N+F G+I
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 28  NSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87
            S   L KLI L    L  N  SG EI   +I L  L  L+LF ++ +G +PV+   L  
Sbjct: 278 PSIFSLQKLISLD---LSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 88  LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           L+VL +    F   I   L     L +L LS N+  G I
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LDL ++ L   I +  G F    LK L L  N   G +I   + NL+ L +L L  + L 
Sbjct: 145 LDLSNNMLSGEIPNDIGSFS--SLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLV 201

Query: 76  GGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           G +P     ++SLK + +   N    I + +  LT L  L L  N+  G I
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 26/69 (37%), Positives = 37/69 (53%)

Query: 58  IINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHL 117
           I  L  L  +NL  +S+ G +P S   + SL+VL +   +F   I   L  LT L IL+L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 118 SQNSFRGRI 126
           + NS  GR+
Sbjct: 498 NGNSLSGRV 506

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.62
PLN03150	623	hypothetical protein; Provisional	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.4
PLN03150	623	hypothetical protein; Provisional	99.39
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.07
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.07
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.05
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.61
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.59
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.33
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.87
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.86
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.42
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.79
PRK15386	426	type III secretion protein GogB; Provisional	96.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.66
PRK15386	426	type III secretion protein GogB; Provisional	96.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.49
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.35
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.96
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.62
smart00370	26	LRR Leucine-rich repeats, outliers.	93.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.2
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	91.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	90.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.42
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.13
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.3
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.83

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=3.1e-16  Score=119.62  Aligned_cols=113  Identities=27%  Similarity=0.350  Sum_probs=98.5

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++.|++++|++.+..  |..+..+++|+.|++++|.+.+ .+|..+..+++|+.+++++|.+++..|..+..+++|+.
T Consensus       475 ~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  551 (968)
T PLN00113        475 KRLENLDLSRNQFSGAV--PRKLGSLSELMQLKLSENKLSG-EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ  551 (968)
T ss_pred             ccceEEECcCCccCCcc--ChhhhhhhccCEEECcCCccee-eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence            46788888888888777  7778888889999999999884 68888888999999999999998888888889999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCeecC
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI  126 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~~  126 (126)
                      |++++|++.+.+|..+..+++|+.+++++|+++|.+
T Consensus       552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             EECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            999999999899999999999999999999988754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.62  E-value=1.3e-15  Score=116.18  Aligned_cols=111  Identities=29%  Similarity=0.351  Sum_probs=58.1

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+..  |..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..++.+++|+.
T Consensus       140 ~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        140 PNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCCCEEECcCCcccccC--ChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            34455555555544444  4455555555555555555542 44555555555555555555555445555555555555


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+.+.+|..++.+++|++|++++|.++|
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            5555555555555555555555555555554443

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=1.4e-14  Score=106.32  Aligned_cols=116  Identities=23%  Similarity=0.298  Sum_probs=102.2

Q ss_pred             CccccCC----CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC
Q 037844            3 DQAEKKQ----RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL   78 (126)
Q Consensus         3 ~~~~~~~----~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~   78 (126)
                      |+.|...    ...++.|++++|.+.+.+  |..+..+++|+.|++++|.+.| .+|..++.+++|+.|++++|.+.+..
T Consensus       406 Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~i  482 (623)
T PLN03150        406 GADCQFDSTKGKWFIDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSI  482 (623)
T ss_pred             cceeeccCCCCceEEEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCC
Confidence            6777421    125899999999999988  8899999999999999999985 78988999999999999999999999


Q ss_pred             CccccCCCCCcEEEeecCccCccchHHHhcC-CCCcEEEccCCc
Q 037844           79 PVSTKYLRSLKVLAIIKCNFCSRITFLLRNL-TQLIILHLSQNS  121 (126)
Q Consensus        79 ~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~-~~L~~l~l~~n~  121 (126)
                      |..++.+++|+.|++++|.+.+.+|..+... .++..+++.+|.
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999999999999999999999988764 467788888875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=4e-16  Score=96.58  Aligned_cols=107  Identities=24%  Similarity=0.273  Sum_probs=82.5

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++++.|.+|+|.++ ..  |+.+..+.+|+.|.+.+|+++  .+|..+..+++|+.++++.|++. ..|..|+.+|.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~v--ppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VV--PPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             chhhhhhhhcccCcee-ec--CCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3477888999999988 55  677888899999999999987  68888889999999999988886 678889999999


Q ss_pred             cEEEeecCccCc-cchHHHhcCCCCcEEEccCCc
Q 037844           89 KVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNS  121 (126)
Q Consensus        89 ~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~  121 (126)
                      +.|++..|.+.. .+|..|..+..|+.+++++|.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCC
Confidence            999888887753 344444444445555555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.40  E-value=2.8e-14  Score=101.92  Aligned_cols=114  Identities=21%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      ...++.|++++|++...-  ...+..+..|+.|++++|.+. ..-++.|..+++|.+|+++.|+++...+.+|..+..|+
T Consensus       268 l~kme~l~L~~N~l~~vn--~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVN--EGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             ecccceeecccchhhhhh--cccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            357888999999888544  566778888999999999987 35567788889999999999999866667777888888


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCeecC
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI  126 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~~  126 (126)
                      .|+|+.|+++..-...|..+++|+.||++.|.++|.|
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            8888888887544556777788888888888888764

>PLN03150 hypothetical protein; Provisional

Probab=99.39  E-value=1.1e-12  Score=96.34  Aligned_cols=87  Identities=34%  Similarity=0.376  Sum_probs=82.0

Q ss_pred             CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEcc
Q 037844           39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLS  118 (126)
Q Consensus        39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~  118 (126)
                      ++.|++++|.+.| .+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6789999999985 789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCeecC
Q 037844          119 QNSFRGRI  126 (126)
Q Consensus       119 ~n~i~~~~  126 (126)
                      +|.++|.+
T Consensus       499 ~N~l~g~i  506 (623)
T PLN03150        499 GNSLSGRV  506 (623)
T ss_pred             CCcccccC
Confidence            99999864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=2.3e-14  Score=88.84  Aligned_cols=107  Identities=22%  Similarity=0.322  Sum_probs=82.4

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc-CcCCccccCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS-GGLPVSTKYLRS   87 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~l~~   87 (126)
                      ...+++.|++.+|++. ++  |..++.++.|+.|.+..|++.  ..|..|+.++-|+.+|+.+|.+. ..+|+.|..|..
T Consensus        54 ~l~nlevln~~nnqie-~l--p~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~t  128 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIE-EL--PTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT  128 (264)
T ss_pred             Hhhhhhhhhcccchhh-hc--Chhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence            3457888999999988 67  888999999999999999987  78999999999999999988876 345666666666


Q ss_pred             CcEEEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844           88 LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS  121 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~  121 (126)
                      |+.|.++.|-+. .+|..++.+++|+.+.+..|.
T Consensus       129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            666666666666 556666666666666666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=2.4e-12  Score=80.61  Aligned_cols=104  Identities=24%  Similarity=0.235  Sum_probs=28.1

Q ss_pred             ceEEEEcCCCCcccccCCCcccc-ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccc-cCCCCCc
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVST-KYLRSLK   89 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~   89 (126)
                      ++++|++++|.++ .+   ..++ .+.+|+.|++++|.++  .+ +.+..++.|+.|++++|+++.. .+.+ ..++.|+
T Consensus        20 ~~~~L~L~~n~I~-~I---e~L~~~l~~L~~L~Ls~N~I~--~l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TI---ENLGATLDKLEVLDLSNNQIT--KL-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             ccccccccccccc-cc---cchhhhhcCCCEEECCCCCCc--cc-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            3456666666655 22   1233 3455666666666665  23 2355566666666666666532 2222 2456666


Q ss_pred             EEEeecCccCc-cchHHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .|++++|++.. ..-..++.+++|+.|++.+|+++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666542 11234455666666666666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.30  E-value=5.5e-13  Score=91.80  Aligned_cols=109  Identities=28%  Similarity=0.347  Sum_probs=91.3

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++++-|++++|-+. .+  |-+++.+..|+.++++.|+|.  ..|..+..+..++.+-.+.|++....+..++.|..|
T Consensus       433 ~l~kLt~L~L~NN~Ln-~L--P~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  433 QLQKLTFLDLSNNLLN-DL--PEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             hhhcceeeecccchhh-hc--chhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            4567888888888777 55  778888888888999988886  677776666667777667788876666668899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      ..||+.+|.+. .+|+.+++|.+|+++++.+|+|+
T Consensus       508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999999 88999999999999999999986

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=4e-11  Score=75.16  Aligned_cols=102  Identities=27%  Similarity=0.281  Sum_probs=51.5

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhh-hCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKI-INLSRLSYLNLFYSSLSGGL-PVSTKYLRS   87 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~   87 (126)
                      ..+++.|++++|.++ .+   ..+..++.|+.|++++|.++  .+.+.+ ..+++|+.+++++|++...- ...+..+++
T Consensus        41 l~~L~~L~Ls~N~I~-~l---~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~  114 (175)
T PF14580_consen   41 LDKLEVLDLSNNQIT-KL---EGLPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK  114 (175)
T ss_dssp             -TT--EEE-TTS--S------TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred             hcCCCEEECCCCCCc-cc---cCccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence            468999999999999 44   35788999999999999998  354444 36899999999999997421 244678899


Q ss_pred             CcEEEeecCccCccc---hHHHhcCCCCcEEEc
Q 037844           88 LKVLAIIKCNFCSRI---TFLLRNLTQLIILHL  117 (126)
Q Consensus        88 L~~l~l~~n~~~~~~---p~~l~~~~~L~~l~l  117 (126)
                      |+.|++.+|+++..-   ...+..+|+|+.||-
T Consensus       115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999999999998432   135778899999984

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.15  E-value=3.3e-11  Score=63.02  Aligned_cols=60  Identities=30%  Similarity=0.279  Sum_probs=33.2

Q ss_pred             CCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           63 RLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        63 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      +|+.+++++|+++...+..|..+++|+++++++|.+....+..|..+++|+++++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555533334455555666666666666544444556666666666666653

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.14  E-value=9.9e-12  Score=92.57  Aligned_cols=107  Identities=30%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      -..+|+.|+++||++. .+| ...+.++..|++|++++|+++  .+|..+..+..|+.+...+|++. .+| .+..++.|
T Consensus       381 ~~~hLKVLhLsyNrL~-~fp-as~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLN-SFP-ASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             cccceeeeeecccccc-cCC-HHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            3478999999999988 453 355778899999999999998  78999999999999999999987 667 68899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS  121 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~  121 (126)
                      +.+|++.|.++....+.....++|++||+++|.
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            999999999885443333333899999999986

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.13  E-value=3.7e-11  Score=86.37  Aligned_cols=109  Identities=26%  Similarity=0.198  Sum_probs=76.5

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchh-hhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEIL-IKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      ++++.|++.+|.++..-  ..++..++.|+.||++.|.++  .++ +.+..-.++.+|++++|+++..-.+.|..+.+|.
T Consensus       125 ghl~~L~L~~N~I~sv~--se~L~~l~alrslDLSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~  200 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVT--SEELSALPALRSLDLSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL  200 (873)
T ss_pred             cceeEEeeecccccccc--HHHHHhHhhhhhhhhhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence            56777777777776544  456666777777777777776  233 3344446678888888888766666677777888


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .+.|+.|+++...+..|+++++|+.|++..|+|.
T Consensus       201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             eeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            8888888888444456667888888888887663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=2.3e-10  Score=59.81  Aligned_cols=60  Identities=25%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSS   73 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~   73 (126)
                      +++++|++++|++....  +..+..+++|++|++++|.+. ...+..|..+++|+++++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~--~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIP--PDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEEC--TTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccC--HHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            35667777777666333  355666677777777777765 2344455666666666666664

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.07  E-value=4.9e-12  Score=91.77  Aligned_cols=104  Identities=21%  Similarity=0.174  Sum_probs=49.6

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      ++++|++|.|+++ .+  |..+..++.|+.|++.+|++.=..+|+.++++..|+.+..++|.+. ..|.++..+..|+.|
T Consensus       269 ~lEtLNlSrNQLt-~L--P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  269 NLETLNLSRNQLT-VL--PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             hhhhhccccchhc-cc--hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            3444444444444 33  4444444444444444444321124444444444444444444443 344555555555555


Q ss_pred             EeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           92 AIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      .|+.|.+. .+|+.+--++.|..||+..|
T Consensus       345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  345 KLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             ccccccee-echhhhhhcCCcceeeccCC
Confidence            55555555 45555555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.07  E-value=4.5e-12  Score=91.95  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=85.9

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc-CcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS-GGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~l~~L~   89 (126)
                      .+++.|++|+|+++ ++  .-....+.+++.|+++.|+++  .+|..++++++|+.|.+.+|+++ .-+|..++++..|+
T Consensus       245 ~~LrrLNLS~N~it-eL--~~~~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKIT-EL--NMTEGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             hhhheeccCcCcee-ee--eccHHHHhhhhhhccccchhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            56777777777777 44  334556677777888888877  68899999999999999999876 34678889999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      .+..++|.+. -+|+.+.++.+|+.|.+..|++
T Consensus       320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             HHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            9988888888 8899999999999999998875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.05  E-value=3.5e-12  Score=87.96  Aligned_cols=105  Identities=26%  Similarity=0.203  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcccc-CCCCCcE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTK-YLRSLKV   90 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~   90 (126)
                      +++.++..+|-+. .+  |+.++.|.+|.-||+..|.+.  .+| .|..+..|..++++.|++. .+|..+. .++++.+
T Consensus       184 ~L~~ld~~~N~L~-tl--P~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  184 RLKHLDCNSNLLE-TL--PPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHhcccchhhhh-cC--ChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence            3444555555444 34  555555555555555555554  344 3555555555555555554 3444333 5667777


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +|+..|+++ ++|..+.-+.+|.++|+++|.|++
T Consensus       257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             eeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence            777777777 667777777777777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.95  E-value=7.2e-10  Score=75.20  Aligned_cols=15  Identities=33%  Similarity=0.572  Sum_probs=6.5

Q ss_pred             CCCCcEEEccCCcCe
Q 037844          109 LTQLIILHLSQNSFR  123 (126)
Q Consensus       109 ~~~L~~l~l~~n~i~  123 (126)
                      +++|++|++++|.++
T Consensus       220 ~~~L~~L~ls~n~l~  234 (319)
T cd00116         220 LKSLEVLNLGDNNLT  234 (319)
T ss_pred             cCCCCEEecCCCcCc
Confidence            344444444444433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=1.5e-10  Score=77.71  Aligned_cols=109  Identities=23%  Similarity=0.247  Sum_probs=72.2

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc-------
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS-------   81 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-------   81 (126)
                      .+..++++++|+|.++ .+  ..++.-.+.++.|+++.|.+.  .+ ..+..+++|+.+|+++|.++ .+.++       
T Consensus       282 TWq~LtelDLS~N~I~-~i--DESvKL~Pkir~L~lS~N~i~--~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QI--DESVKLAPKLRRLILSQNRIR--TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             hHhhhhhccccccchh-hh--hhhhhhccceeEEecccccee--ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            4456788888888777 44  456666678888888888876  33 33777788888888888765 22222       


Q ss_pred             ---------------ccCCCCCcEEEeecCccCccch--HHHhcCCCCcEEEccCCcCeec
Q 037844           82 ---------------TKYLRSLKVLAIIKCNFCSRIT--FLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        82 ---------------~~~l~~L~~l~l~~n~~~~~~p--~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                                     +.++-+|..||+.+|++. .+.  ..++.+|+|+++.+.+|++++.
T Consensus       355 KtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  355 KTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eeeehhhhhHhhhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcccc
Confidence                           233445666666666665 222  2466778888888888888765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.94  E-value=2.1e-09  Score=80.54  Aligned_cols=58  Identities=22%  Similarity=0.277  Sum_probs=41.3

Q ss_pred             CCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           63 RLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        63 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +|+.+++++|+++ .+|..   ...|+.|++++|.++ .+|..+..+++|+.+++++|+++|.
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            4455555555554 23321   235667778888887 7888899999999999999999875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=1.3e-10  Score=77.93  Aligned_cols=88  Identities=19%  Similarity=0.146  Sum_probs=65.0

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCc--------------------chhhhhhCCCCCCEEE
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGF--------------------EILIKIINLSRLSYLN   68 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~~~~~~~~l~~L~~l~   68 (126)
                      ..+.++.|++|+|.+. ..   ..+..+++|+.||+++|.++.-                    .....+.++.+|..+|
T Consensus       305 L~Pkir~L~lS~N~i~-~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLD  380 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIR-TV---QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLD  380 (490)
T ss_pred             hccceeEEecccccee-ee---hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecc
Confidence            4478899999999888 33   3467788888899888865410                    0122344567888999


Q ss_pred             cccCcCcCcC-CccccCCCCCcEEEeecCccCc
Q 037844           69 LFYSSLSGGL-PVSTKYLRSLKVLAIIKCNFCS  100 (126)
Q Consensus        69 l~~~~~~~~~-~~~~~~l~~L~~l~l~~n~~~~  100 (126)
                      +.+|++.... ...++.+|+|+++.+.+|++.+
T Consensus       381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            9999987422 3568999999999999999984

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.90  E-value=1.2e-10  Score=80.19  Aligned_cols=109  Identities=21%  Similarity=0.156  Sum_probs=89.8

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEccc-CcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFY-SSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~   89 (126)
                      +..++++|..|+++..-  +.+|..+++|+.|++++|.++ .+.|..|..++++..+.+-+ |++++..-..|+.+.+++
T Consensus        67 ~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             CcceEEEeccCCcccCC--hhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            56788999999999544  688899999999999999998 57888898898887777765 888755445688899999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      -|.++-|.+.-.....+..++++..|.+.+|.+
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence            998988888866677888888888888888765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.90  E-value=5.8e-11  Score=88.60  Aligned_cols=107  Identities=30%  Similarity=0.303  Sum_probs=91.6

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +.|+.|++.+|.+++..  -+.+..+++|+.|+|++|++. ......+.+++.|+.|++++|.++ .+|..+..++.|++
T Consensus       359 ~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT  434 (1081)
T ss_pred             HHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence            56788899999999876  677888999999999999987 233455678899999999999997 67888888999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |-..+|.+. .+| .+..++.|+.+|++.|.++
T Consensus       435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            989999988 778 7788999999999999876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.89  E-value=1.9e-09  Score=73.18  Aligned_cols=113  Identities=23%  Similarity=0.205  Sum_probs=72.4

Q ss_pred             CCceEEEEcCCCCcccccCCCcccccccc---CceeEeccCcccCcc---hhhhhhCC-CCCCEEEcccCcCcCc----C
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIH---LKWLILLFNKFSGFE---ILIKIINL-SRLSYLNLFYSSLSGG----L   78 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~---L~~L~l~~n~~~~~~---~~~~~~~l-~~L~~l~l~~~~~~~~----~   78 (126)
                      .++++.|++++|.+....  +..+..+..   |++|++++|.+.+..   +...+..+ ++|+.+++++|.+++.    .
T Consensus        80 ~~~L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhH--HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            357888888888776443  344444444   888888888775211   12234455 7788888888887632    2


Q ss_pred             CccccCCCCCcEEEeecCccCcc----chHHHhcCCCCcEEEccCCcCee
Q 037844           79 PVSTKYLRSLKVLAIIKCNFCSR----ITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        79 ~~~~~~l~~L~~l~l~~n~~~~~----~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +..+..++.|+.+++++|.+++.    ++..+...++|+.+++++|.+++
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            23345566788888888887742    23344555688888888887753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.76  E-value=4.5e-08  Score=76.79  Aligned_cols=103  Identities=28%  Similarity=0.277  Sum_probs=43.8

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      +++.|++++|.+. .+  +..+..+++|++++++++... ..+|. +..+++|+.|++.+|.....+|..++.+++|+.|
T Consensus       612 ~L~~L~L~~s~l~-~L--~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KL--WDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CCcEEECcCcccc-cc--ccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            4444444444444 22  333344444555555443322 12332 3444455555554443333444444445555555


Q ss_pred             EeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           92 AIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      ++++|...+.+|..+ .+++|+.|++++|
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            554443333333322 3344444444443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.76  E-value=2.8e-08  Score=74.67  Aligned_cols=98  Identities=20%  Similarity=0.246  Sum_probs=54.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++.|++++|.++ .+  |..+.  .+|++|++++|.++  .+|..+  ...|+.+++++|.+. .+|..+.  ..|+.
T Consensus       199 ~~L~~L~Ls~N~Lt-sL--P~~l~--~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~  266 (754)
T PRK15370        199 EQITTLILDNNELK-SL--PENLQ--GNIKTLYANSNQLT--SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQS  266 (754)
T ss_pred             cCCcEEEecCCCCC-cC--Chhhc--cCCCEEECCCCccc--cCChhh--hccccEEECcCCccC-cCChhHh--CCCCE
Confidence            35666666666666 34  33332  35666666666665  344433  235666666666655 4444332  35666


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |+++.|++. .+|..+.  ++|+.|++++|+++
T Consensus       267 L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        267 LDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             EECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            666666666 4454332  35666666666654

>PLN03210 Resistant to P

Probab=98.72  E-value=1e-07  Score=74.86  Aligned_cols=104  Identities=17%  Similarity=0.165  Sum_probs=83.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ..++.|.+.++.+. .+  |..+ ...+|++|++.+|.+.  .++..+..+++|+.++++++......|. +..+++|+.
T Consensus       589 ~~Lr~L~~~~~~l~-~l--P~~f-~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~  661 (1153)
T PLN03210        589 PKLRLLRWDKYPLR-CM--PSNF-RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET  661 (1153)
T ss_pred             cccEEEEecCCCCC-CC--CCcC-CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence            35777888877766 55  5554 4578999999999887  5667777899999999998764445554 778899999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNS  121 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~  121 (126)
                      |++.+|.....+|..+..+++|+.|++++|.
T Consensus       662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             EEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            9999988777899999999999999999864

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.69  E-value=2.7e-08  Score=74.71  Aligned_cols=99  Identities=21%  Similarity=0.231  Sum_probs=53.0

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhh-------------------CCCCCCEEEcccC
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKII-------------------NLSRLSYLNLFYS   72 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------------------~l~~L~~l~l~~~   72 (126)
                      +|+.|++++|.+. .+  |..+.  ++|+.|++++|.++  .+|..+.                   ..++|+.|++++|
T Consensus       263 ~L~~L~Ls~N~L~-~L--P~~l~--~sL~~L~Ls~N~Lt--~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        263 ALQSLDLFHNKIS-CL--PENLP--EELRYLSVYDNSIR--TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             CCCEEECcCCccC-cc--ccccC--CCCcEEECCCCccc--cCcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence            5666666666666 34  43332  35666666666554  2222111                   1234555555555


Q ss_pred             cCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           73 SLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        73 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .+++ +|..+  .++|+.|++++|++. .+|..+  .++|+.|++++|.++
T Consensus       336 ~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        336 ALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             cccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            5542 34332  246677777777666 455443  246677777776654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=1.9e-08  Score=76.62  Aligned_cols=106  Identities=25%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             CceEEEEcCCCC--cccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844           11 NHVIKLDLPSSC--LQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        11 ~~l~~L~ls~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      +.+++|-+..|.  +. ..+ ...|..|+.|+.||+++|.-- ..+|..++.+-+|++|++..+.+. .+|..++.+..|
T Consensus       545 ~~L~tLll~~n~~~l~-~is-~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EIS-GEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhh-hcC-HHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            457777777775  33 220 233666888888888887654 368888888888888888888887 778888888888


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      .+|++..+.....+|.....+.+|+++.+..-
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeecc
Confidence            88888877765566666777888888887654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.62  E-value=1.5e-08  Score=70.16  Aligned_cols=91  Identities=23%  Similarity=0.196  Sum_probs=68.0

Q ss_pred             cccCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccC
Q 037844            5 AEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKY   84 (126)
Q Consensus         5 ~~~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~   84 (126)
                      .|+...++++.|++++|+++..-  +.+|.....+++|++..|++. ..-..-|..+..|..|++.+|+++...|..|..
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~--~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIE--DGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             HHHhhcccceEeccCCCccchhh--hhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            45566788888888888888655  677777888888888888876 233344556778888888888888777777877


Q ss_pred             CCCCcEEEeecCcc
Q 037844           85 LRSLKVLAIIKCNF   98 (126)
Q Consensus        85 l~~L~~l~l~~n~~   98 (126)
                      +.+|..+++-.|++
T Consensus       345 ~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  345 LFSLSTLNLLSNPF  358 (498)
T ss_pred             cceeeeeehccCcc
Confidence            88888888777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.61  E-value=8.6e-09  Score=74.08  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             eEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844           13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA   92 (126)
Q Consensus        13 l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~   92 (126)
                      |+.|.+++|+++ .+  |..++-+..|..|+.+.|.+.  .+|..++.+.+|+.+.+..|.+. .+|..+.. -.|..||
T Consensus       145 Lkvli~sNNkl~-~l--p~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lD  217 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SL--PEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLD  217 (722)
T ss_pred             ceeEEEecCccc-cC--CcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeee
Confidence            344444444444 33  444444445555555555553  34555555555555555555554 34444442 2366777


Q ss_pred             eecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++.|++. .+|-.|.+|+.|++|-|.+|++..
T Consensus       218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             cccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            7777777 777777778888888887777653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.59  E-value=2.3e-09  Score=76.97  Aligned_cols=104  Identities=30%  Similarity=0.342  Sum_probs=77.8

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ..++.++++.|++. .+  |..+..++ |+.|-+++|+++  .+|+.++....|..++.+.|.+. .+|..++.+.+|+.
T Consensus       121 ~~lt~l~ls~NqlS-~l--p~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~  193 (722)
T KOG0532|consen  121 EALTFLDLSSNQLS-HL--PDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD  193 (722)
T ss_pred             hHHHHhhhccchhh-cC--ChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence            45677777777777 55  55655555 677777888776  57777777777888888887775 55666777888888


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +++..|.+. .+|+.+.. -.|..||++.|+|+
T Consensus       194 l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis  224 (722)
T KOG0532|consen  194 LNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS  224 (722)
T ss_pred             HHHhhhhhh-hCCHHHhC-CceeeeecccCcee
Confidence            888888887 67777774 45899999999886

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.54  E-value=1.3e-07  Score=45.98  Aligned_cols=35  Identities=29%  Similarity=0.329  Sum_probs=15.9

Q ss_pred             CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           88 LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++|++++|+++ .+|+.++.+++|+.|++++|+|+
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 33444445555555555555443

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.53  E-value=6.3e-08  Score=67.86  Aligned_cols=103  Identities=28%  Similarity=0.285  Sum_probs=70.6

Q ss_pred             CceEEEEcCCCCcccccCCCccccccc-cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLI-HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      +.++.|++.+|.+. .+  ++....+. +|+.|+++.|.+.  .+|..+..++.|+.++++.|.+. .++...+..+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i--~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         116 TNLTSLDLDNNNIT-DI--PPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             cceeEEecCCcccc-cC--ccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            45777777777777 44  45555553 7788888888776  45556677778888888888776 4454444667777


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      .+++++|.+. .+|........|+.+.+++|
T Consensus       190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             heeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            7777777777 66665555555777777776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.50  E-value=5.3e-09  Score=77.18  Aligned_cols=106  Identities=25%  Similarity=0.254  Sum_probs=72.9

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      +..+.+.++++|.+. ..  ..++.-++.++.|+++.|++.  .+. .+..++.|.+||++.|.++ ..|.--..-..|+
T Consensus       163 Wn~L~~a~fsyN~L~-~m--D~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~  235 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LM--DESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQ  235 (1096)
T ss_pred             hhhHhhhhcchhhHH-hH--HHHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhc-cccccchhhhhhe
Confidence            345677778888877 44  566677788888888888887  343 6777888888888888886 4443222223488


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|.+.+|-++.  -..+.++.+|+.||++.|-+++
T Consensus       236 ~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  236 LLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eeeecccHHHh--hhhHHhhhhhhccchhHhhhhc
Confidence            88888887762  2245667778888888776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=1.4e-08  Score=61.04  Aligned_cols=77  Identities=19%  Similarity=0.193  Sum_probs=33.6

Q ss_pred             cCceeEeccCcccCcchhhhhh-CCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844           38 HLKWLILLFNKFSGFEILIKII-NLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH  116 (126)
Q Consensus        38 ~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~  116 (126)
                      .|+..++++|.+.  ..|+.+. .++..+.+++++|.++ ..|..+..++.|+.+++..|++. ..|..+..+.++..|+
T Consensus        54 el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             eEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            3444445555444  2333332 2234444555555444 33444444455555555555444 3344444344444444


Q ss_pred             cc
Q 037844          117 LS  118 (126)
Q Consensus       117 l~  118 (126)
                      .-
T Consensus       130 s~  131 (177)
T KOG4579|consen  130 SP  131 (177)
T ss_pred             CC
Confidence            33

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.41  E-value=2.9e-07  Score=69.40  Aligned_cols=85  Identities=22%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      +|+.|++++|.+. .+  |..   .++|+.|++++|.++  .+|..   ...|+.+++++|+++ .+|..+..++.|+.+
T Consensus       383 ~L~~LdLs~N~Lt-~L--P~l---~s~L~~LdLS~N~Ls--sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L  450 (788)
T PRK15387        383 GLKELIVSGNRLT-SL--PVL---PSELKELMVSGNRLT--SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTV  450 (788)
T ss_pred             ccceEEecCCccc-CC--CCc---ccCCCEEEccCCcCC--CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence            4555556665555 23  322   245777777777776  35542   346888999999997 689889999999999


Q ss_pred             EeecCccCccchHHHhc
Q 037844           92 AIIKCNFCSRITFLLRN  108 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~  108 (126)
                      ++++|++++..+..+..
T Consensus       451 dLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        451 NLEGNPLSERTLQALRE  467 (788)
T ss_pred             ECCCCCCCchHHHHHHH
Confidence            99999999887776643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.40  E-value=1.1e-07  Score=66.71  Aligned_cols=105  Identities=31%  Similarity=0.384  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      ++++|+++.|++. .+  |..+..++.|+.|+++.|.+.  .++...+..+.++.+++++|++. .+|........|+.+
T Consensus       141 nL~~L~l~~N~i~-~l--~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l  214 (394)
T COG4886         141 NLKELDLSDNKIE-SL--PSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL  214 (394)
T ss_pred             hcccccccccchh-hh--hhhhhccccccccccCCchhh--hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhh
Confidence            6777777777766 33  345666777777777777776  45554446666777777777665 344433333335555


Q ss_pred             EeecC-----------------------ccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           92 AIIKC-----------------------NFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        92 ~l~~n-----------------------~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .+++|                       ++. .++..++.+++++.+++++|.++
T Consensus       215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             hhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence            55555                       333 22445555566666666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=8.7e-08  Score=67.02  Aligned_cols=87  Identities=28%  Similarity=0.239  Sum_probs=37.9

Q ss_pred             CCceEEEEcCCCCcccccCCCcc-ccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSG-LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .++|+.|+++.|.+....  ... -..+++|+.|.++.|.+++..+......+|++..+++..|..-.........+..|
T Consensus       171 Lp~Le~LNls~Nrl~~~~--~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFI--SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             cccchhcccccccccCCc--cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            345555555555544222  111 11234555555555555533333334445555555555552111111112234445


Q ss_pred             cEEEeecCcc
Q 037844           89 KVLAIIKCNF   98 (126)
Q Consensus        89 ~~l~l~~n~~   98 (126)
                      +.|+|++|++
T Consensus       249 ~~LdLs~N~l  258 (505)
T KOG3207|consen  249 QELDLSNNNL  258 (505)
T ss_pred             hhccccCCcc
Confidence            5555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.33  E-value=4.7e-07  Score=69.26  Aligned_cols=107  Identities=26%  Similarity=0.283  Sum_probs=82.2

Q ss_pred             cCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844            7 KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR   86 (126)
Q Consensus         7 ~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~   86 (126)
                      +...+.++.||+++|.-.+.+  |..++.+-+|++|+++++.++  .+|..+..+..|.+|++..+......+.....|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~  642 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ  642 (889)
T ss_pred             HhhCcceEEEECCCCCccCcC--ChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence            345789999999998766788  899999999999999999998  6999999999999999998876545566666799


Q ss_pred             CCcEEEeecCccC--ccchHHHhcCCCCcEEEc
Q 037844           87 SLKVLAIIKCNFC--SRITFLLRNLTQLIILHL  117 (126)
Q Consensus        87 ~L~~l~l~~n~~~--~~~p~~l~~~~~L~~l~l  117 (126)
                      +|++|.+..-...  ...-..+..+..|+.+..
T Consensus       643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            9999998765422  222233344444544443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=1.5e-06  Score=42.20  Aligned_cols=34  Identities=29%  Similarity=0.325  Sum_probs=13.8

Q ss_pred             CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcC
Q 037844           39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL   74 (126)
Q Consensus        39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~   74 (126)
                      |++|++++|.++  .+|+.+..+++|+.+++++|++
T Consensus         3 L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCC
Confidence            444444444443  2333344444444444444444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=1.5e-08  Score=61.00  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccc-cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFK-LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      -+++..++++|.+. .+  |+.+.. ++.++.+++++|.++  .+|..++.++.|+.++++.|.+. ..|.-+..+.++.
T Consensus        53 ~el~~i~ls~N~fk-~f--p~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KF--PKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             ceEEEEecccchhh-hC--CHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            46778888999888 44  555544 457888999999987  58888888999999999998886 5666666677888


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|+..+|... +++-.+..-...-..+++++.+.|
T Consensus       127 ~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  127 MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             HhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence            8888888877 555544333333344445555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.25  E-value=2.2e-06  Score=54.74  Aligned_cols=101  Identities=20%  Similarity=0.102  Sum_probs=53.7

Q ss_pred             eEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCc-CCccccCCCCCcEE
Q 037844           13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGG-LPVSTKYLRSLKVL   91 (126)
Q Consensus        13 l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~l   91 (126)
                      ...++++.|.+. .+   ..+..++.|.+|.+.+|.++ ...|.--..++.+..|.+.+|++... ....+..+|.|++|
T Consensus        44 ~d~iDLtdNdl~-~l---~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   44 FDAIDLTDNDLR-KL---DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cceecccccchh-hc---ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            345666666655 22   34555666667777777666 22222222345666666666665411 01224456666666


Q ss_pred             EeecCccCccc---hHHHhcCCCCcEEEcc
Q 037844           92 AIIKCNFCSRI---TFLLRNLTQLIILHLS  118 (126)
Q Consensus        92 ~l~~n~~~~~~---p~~l~~~~~L~~l~l~  118 (126)
                      .+-+|+++..-   -..+..+++|+.||+.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehh
Confidence            66666665311   1134456666666643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=2.3e-08  Score=73.94  Aligned_cols=104  Identities=24%  Similarity=0.244  Sum_probs=78.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhh-hhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIK-IINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      +.++.|++++|+++. .   +.+..++.|+.||+++|.+.  .+|.. ...+. |+.|.+++|.++..  ..+.++.+|+
T Consensus       187 ~ale~LnLshNk~~~-v---~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~  257 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTK-V---DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY  257 (1096)
T ss_pred             HHhhhhccchhhhhh-h---HHHHhcccccccccccchhc--cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence            678999999999984 3   36788899999999999986  45542 12333 99999999988732  4467889999


Q ss_pred             EEEeecCccCcc-chHHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSR-ITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~-~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .||++.|-+.+. --+.++.+..|+.|++-+|++.
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            999999987642 1234566778888888888763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=7.1e-07  Score=63.20  Aligned_cols=103  Identities=29%  Similarity=0.287  Sum_probs=56.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      .+++.|++..|.+.. +  ...+..+++|++|++++|.++  .+ ..+..++.|+.|++.+|.+..  ...+..+..|+.
T Consensus        95 ~~l~~l~l~~n~i~~-i--~~~l~~~~~L~~L~ls~N~I~--~i-~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~  166 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-I--ENLLSSLVNLQVLDLSFNKIT--KL-EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKL  166 (414)
T ss_pred             cceeeeeccccchhh-c--ccchhhhhcchheeccccccc--cc-cchhhccchhhheeccCcchh--ccCCccchhhhc
Confidence            456666666666663 2  222455666666666666665  12 224455556666666666642  233444566666


Q ss_pred             EEeecCccCccch-HHHhcCCCCcEEEccCCcC
Q 037844           91 LAIIKCNFCSRIT-FLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        91 l~l~~n~~~~~~p-~~l~~~~~L~~l~l~~n~i  122 (126)
                      +++++|.+...-+ . ...+.+++.+++.+|.+
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            6666666663222 1 34555666666666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.11  E-value=6.7e-06  Score=52.54  Aligned_cols=102  Identities=23%  Similarity=0.157  Sum_probs=74.6

Q ss_pred             EEEEcCCCCcccccCCCccccc-cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844           14 IKLDLPSSCLQDSINSSSGLFK-LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA   92 (126)
Q Consensus        14 ~~L~ls~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~   92 (126)
                      +++++++.++....   . ++- +.....+|+++|.+.  . .+.+..++.|.+|.+++|+++...|.--..++.++.|.
T Consensus        22 ~e~~LR~lkip~ie---n-lg~~~d~~d~iDLtdNdl~--~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   22 RELDLRGLKIPVIE---N-LGATLDQFDAIDLTDNDLR--K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             cccccccccccchh---h-ccccccccceecccccchh--h-cccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence            56777777655221   1 222 345678899999885  2 34577889999999999999866666555678899999


Q ss_pred             eecCccCccch--HHHhcCCCCcEEEccCCcCe
Q 037844           93 IIKCNFCSRIT--FLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        93 l~~n~~~~~~p--~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.+|++. ++.  ..+..+++|++|.+-+|+++
T Consensus        95 LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   95 LTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             ecCcchh-hhhhcchhccCCccceeeecCCchh
Confidence            9999887 332  24678899999999998875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.11  E-value=5.6e-07  Score=63.71  Aligned_cols=105  Identities=27%  Similarity=0.247  Sum_probs=81.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ..+..++++.|.+.. .  ...+..+.+++.+++..|.+.  .+...+..+++|+++++++|.++..  ..+..++.|+.
T Consensus        72 ~~l~~l~l~~n~i~~-~--~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-I--LNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HhHHhhccchhhhhh-h--hcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence            445666677777663 2  255788899999999999997  3444377899999999999999743  44667888999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++.+|.+. .+. .+..+..|+.+++++|.++.
T Consensus       145 L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  145 LNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             heeccCcch-hcc-CCccchhhhcccCCcchhhh
Confidence            999999998 332 34557899999999998764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.94  E-value=4.1e-06  Score=57.30  Aligned_cols=111  Identities=18%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             CceEEEEcCCCCcccccCCCccc----cccccCceeEeccCcccC---cc---------hhhhhhCCCCCCEEEcccCcC
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGL----FKLIHLKWLILLFNKFSG---FE---------ILIKIINLSRLSYLNLFYSSL   74 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~----~~l~~L~~L~l~~n~~~~---~~---------~~~~~~~l~~L~~l~l~~~~~   74 (126)
                      +++++|+||.|.+....  ++.+    .+...|++|+|.+|.+..   ..         ...-.+.-+.|+.+...+|++
T Consensus        92 ~~L~~ldLSDNA~G~~g--~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKG--IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             CceeEeeccccccCccc--hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            58999999999887443  3333    445678889999887741   11         112233457788888888887


Q ss_pred             cCcCC----ccccCCCCCcEEEeecCccCcc----chHHHhcCCCCcEEEccCCcCe
Q 037844           75 SGGLP----VSTKYLRSLKVLAIIKCNFCSR----ITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        75 ~~~~~----~~~~~l~~L~~l~l~~n~~~~~----~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .....    ..+...+.|+.+.+..|.+...    +...+.+++.|++||+.+|-++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            63211    2234455666666666655421    2234556666666666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=1.1e-05  Score=54.68  Aligned_cols=64  Identities=23%  Similarity=0.267  Sum_probs=41.1

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccc-cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGL-FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL   74 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~   74 (126)
                      ...|+++.|+++.|++...+   ..+ ..+.+|+.|-+.+..+.+......+..+|.++.+.++.|.+
T Consensus        94 e~lP~l~~LNls~N~L~s~I---~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDI---KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             hcCccceEeeccCCcCCCcc---ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            35688888888888877543   233 35567777777776665434444555666677776666643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=3.4e-06  Score=59.32  Aligned_cols=110  Identities=21%  Similarity=0.090  Sum_probs=54.7

Q ss_pred             CCceEEEEcCCCCcccc-cCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844           10 RNHVIKLDLPSSCLQDS-INSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLRS   87 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~   87 (126)
                      .++++.|.++.|.++.. .  -..+..+++|..|++..|..-. .-.....-+..|+.|++++|.+-+.. -...+.++.
T Consensus       196 l~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            36777777777776621 1  1112345666777776663110 11111223455666666666554221 122345566


Q ss_pred             CcEEEeecCccCcc-chH-----HHhcCCCCcEEEccCCcC
Q 037844           88 LKVLAIIKCNFCSR-ITF-----LLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        88 L~~l~l~~n~~~~~-~p~-----~l~~~~~L~~l~l~~n~i  122 (126)
                      |..++++.+.+... .|+     ....+++|++|++..|+|
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            66666666655421 111     123445666666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.84  E-value=4.3e-06  Score=57.20  Aligned_cols=112  Identities=19%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             CceEEEEcCCCCccccc--CCCccccccccCceeEeccCcccC---cchhhhhhCCCCCCEEEcccCcCcCcCCccc---
Q 037844           11 NHVIKLDLPSSCLQDSI--NSSSGLFKLIHLKWLILLFNKFSG---FEILIKIINLSRLSYLNLFYSSLSGGLPVST---   82 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~---   82 (126)
                      +.++.+.++.|.+...-  +....+..+++|+.|++..|.++.   ..+...++.+++|+.++++.+.+.......+   
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            34555555555544210  001223445666677777666641   1234445556667777776666654433322   


Q ss_pred             --cCCCCCcEEEeecCccCccch----HHHhcCCCCcEEEccCCcC
Q 037844           83 --KYLRSLKVLAIIKCNFCSRIT----FLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        83 --~~l~~L~~l~l~~n~~~~~~p----~~l~~~~~L~~l~l~~n~i  122 (126)
                        ...++|+.+.+.+|.++..-.    ......+.|..|++.+|++
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              124667777777776654222    2233456677777777766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=1.3e-05  Score=60.17  Aligned_cols=86  Identities=19%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcC-cCCccccCCCCCcEEEeecCccCccc--h----HHHh
Q 037844           35 KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSG-GLPVSTKYLRSLKVLAIIKCNFCSRI--T----FLLR  107 (126)
Q Consensus        35 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~--p----~~l~  107 (126)
                      ++++|+.||++++.++  .+ ..+..+.+|+.|.+.+=.+.. ..-..+..++.|++||++..+.....  .    +.-.
T Consensus       171 sFpNL~sLDIS~TnI~--nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~  247 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNIS--NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM  247 (699)
T ss_pred             ccCccceeecCCCCcc--Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence            3444444444444443  11 334444444444433333321 11112344566666666554433111  1    1122


Q ss_pred             cCCCCcEEEccCCcCe
Q 037844          108 NLTQLIILHLSQNSFR  123 (126)
Q Consensus       108 ~~~~L~~l~l~~n~i~  123 (126)
                      .+|.|+.||.++..++
T Consensus       248 ~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDIN  263 (699)
T ss_pred             cCccccEEecCCcchh
Confidence            3566666666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=9.1e-07  Score=59.17  Aligned_cols=100  Identities=28%  Similarity=0.189  Sum_probs=74.0

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLRSL   88 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~L   88 (126)
                      ...++.|+.-+|.+.+.    .....|+.|+.|.|+.|.++  .+ ..+..|++|+.+++..|.+.+.. ...+.++++|
T Consensus        18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIs--sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKIS--SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccc--cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            35677888888887743    23356888999999999987  23 44677889999999999886321 1235688999


Q ss_pred             cEEEeecCccCccchH-----HHhcCCCCcEEE
Q 037844           89 KVLAIIKCNFCSRITF-----LLRNLTQLIILH  116 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~-----~l~~~~~L~~l~  116 (126)
                      +.|.|..|++.+.-+.     .+..+|+|+.||
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999999998876654     466778888776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.67  E-value=3.3e-05  Score=50.98  Aligned_cols=102  Identities=24%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccC--cccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc---cc
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFN--KFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS---TK   83 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~   83 (126)
                      .+..++.|.+.+..++..    ..+..|++|++|.++.|  .+.+ .++--...+++|+++.+++|++..  +..   +.
T Consensus        41 ~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~  113 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLK  113 (260)
T ss_pred             cccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCcccc--ccccchhh
Confidence            334555566666666632    34566778888888888  5442 233334456888888888888762  232   34


Q ss_pred             CCCCCcEEEeecCccCccc---hHHHhcCCCCcEEEc
Q 037844           84 YLRSLKVLAIIKCNFCSRI---TFLLRNLTQLIILHL  117 (126)
Q Consensus        84 ~l~~L~~l~l~~n~~~~~~---p~~l~~~~~L~~l~l  117 (126)
                      .+..|..|++.+|..+..-   -..+..+++|+++|-
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            5566777777777665311   124555677777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=2.7e-05  Score=58.57  Aligned_cols=107  Identities=21%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCCcc-cccCCCccccc-cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844           11 NHVIKLDLPSSCLQ-DSINSSSGLFK-LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        11 ~~l~~L~ls~n~l~-~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .+|+.|++++...- ..+  +..++. +|+|+.|.+.+-.+..+..-.-...+++|..||+++++++..  .+++.+++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            56788888885432 122  333343 588888888886664222333345678888888888888633  556788888


Q ss_pred             cEEEeecCccCc-cchHHHhcCCCCcEEEccCCc
Q 037844           89 KVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNS  121 (126)
Q Consensus        89 ~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~  121 (126)
                      +.|.+.+=.+.. ..-..+..+++|++||++..+
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            888776655542 223356778888888888643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.42  E-value=0.0001  Score=48.71  Aligned_cols=88  Identities=25%  Similarity=0.271  Sum_probs=62.0

Q ss_pred             cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC--cCcCcCCccccCCCCCcEEEeecCccCc-cchHHHhcCC
Q 037844           34 FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS--SLSGGLPVSTKYLRSLKVLAIIKCNFCS-RITFLLRNLT  110 (126)
Q Consensus        34 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~p~~l~~~~  110 (126)
                      ..+..|+.+.+.+..++  . -..+..+++|+.|.++.|  ++.+.+......+|+|+++++++|++.. .-...+..+.
T Consensus        40 d~~~~le~ls~~n~glt--t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLT--T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhcccee--e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            34456666666666665  2 234667899999999999  5555454444567999999999999873 1112456677


Q ss_pred             CCcEEEccCCcCee
Q 037844          111 QLIILHLSQNSFRG  124 (126)
Q Consensus       111 ~L~~l~l~~n~i~~  124 (126)
                      +|..|++++|..++
T Consensus       117 nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN  130 (260)
T ss_pred             chhhhhcccCCccc
Confidence            89999999987654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=1.1e-05  Score=54.24  Aligned_cols=81  Identities=23%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccc-----
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVST-----   82 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-----   82 (126)
                      ..++.++.|.||-|.++. +   ..+..++.|++|+|..|.+....-..-+..+++|+.|++.-|.+.+..+...     
T Consensus        38 ~kMp~lEVLsLSvNkIss-L---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL  113 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISS-L---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL  113 (388)
T ss_pred             HhcccceeEEeecccccc-c---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence            567999999999999884 3   4577889999999999999731112345678999999999998887665432     


Q ss_pred             cCCCCCcEEE
Q 037844           83 KYLRSLKVLA   92 (126)
Q Consensus        83 ~~l~~L~~l~   92 (126)
                      ..+|+|+.||
T Consensus       114 R~LPnLkKLD  123 (388)
T KOG2123|consen  114 RVLPNLKKLD  123 (388)
T ss_pred             HHcccchhcc
Confidence            3467777653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.79  E-value=2.9e-05  Score=50.97  Aligned_cols=86  Identities=21%  Similarity=0.050  Sum_probs=72.3

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS   87 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~   87 (126)
                      ..+.+++.||++.|++...   ...+..+..+..++++.|.+.  ..|..+.....++.+++-.|..+ ..|.+++..++
T Consensus        39 ~~~kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hccceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            4557889999999987743   456777888899999999987  68888998888999988888776 78999999999


Q ss_pred             CcEEEeecCccC
Q 037844           88 LKVLAIIKCNFC   99 (126)
Q Consensus        88 L~~l~l~~n~~~   99 (126)
                      ++++++-++.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999888866

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.74  E-value=0.0045  Score=44.13  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=15.3

Q ss_pred             CCcEEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      +|++|++.+|... ..|..+  ..+|+.|+++.+
T Consensus       157 SLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCcccc--cccCcEEEeccc
Confidence            5666666665544 223211  135666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.00093  Score=45.60  Aligned_cols=84  Identities=33%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             ccCceeEeccCcccC-cchhhhhhCCCCCCEEEcccCcCcCcCCccc-cCCCCCcEEEeecCccCccc-hHHHhcCCCCc
Q 037844           37 IHLKWLILLFNKFSG-FEILIKIINLSRLSYLNLFYSSLSGGLPVST-KYLRSLKVLAIIKCNFCSRI-TFLLRNLTQLI  113 (126)
Q Consensus        37 ~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~-p~~l~~~~~L~  113 (126)
                      ..++.+|+.+|.++. ..+..-+.++|.++.++++.|.+...+ +.. -.+..|+.+-|++..+.+.- -..+..+|.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            456777777777751 112223346677777777777765221 222 13345666666666554322 22344556666


Q ss_pred             EEEccCCc
Q 037844          114 ILHLSQNS  121 (126)
Q Consensus       114 ~l~l~~n~  121 (126)
                      .++++.|+
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            66666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.66  E-value=0.0067  Score=41.10  Aligned_cols=111  Identities=21%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCCcccccCCCcccccc----ccCceeEeccCccc---Ccchh---------hhhhCCCCCCEEEcccCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKL----IHLKWLILLFNKFS---GFEIL---------IKIINLSRLSYLNLFYSS   73 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l----~~L~~L~l~~n~~~---~~~~~---------~~~~~l~~L~~l~l~~~~   73 (126)
                      .++++.+++|.|.+....  |..+..+    ..|..|.+.+|.+.   |..+.         .....-|.|+....+.|+
T Consensus        91 cp~l~~v~LSDNAfg~~~--~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEF--PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             CCcceeeeccccccCccc--chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            367788888888877665  4444332    45778888887653   11111         112234678888888887


Q ss_pred             CcCcCCcc-----ccCCCCCcEEEeecCccCccc-----hHHHhcCCCCcEEEccCCcCe
Q 037844           74 LSGGLPVS-----TKYLRSLKVLAIIKCNFCSRI-----TFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        74 ~~~~~~~~-----~~~l~~L~~l~l~~n~~~~~~-----p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.. .+..     +.....|..+.+..|.+.-.-     -..+..+.+|++||+..|-++
T Consensus       169 len-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         169 LEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            752 2221     122235666666666655221     123456677888888877665

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.65  E-value=0.0089  Score=42.65  Aligned_cols=96  Identities=21%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC-cCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS-SLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~l~~L~   89 (126)
                      .+++.|++++|.++ .+  | .+.  .+|+.|.+.++.-- ..+|..+  .+.|+.|.+.+| .+. .+|.      .|+
T Consensus        52 ~~l~~L~Is~c~L~-sL--P-~LP--~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         52 RASGRLYIKDCDIE-SL--P-VLP--NELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             cCCCEEEeCCCCCc-cc--C-CCC--CCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence            56788999988777 55  4 222  35888888874432 1455443  356888888776 332 3343      244


Q ss_pred             EEEeecCcc--CccchHHHhcC------------------CCCcEEEccCCcC
Q 037844           90 VLAIIKCNF--CSRITFLLRNL------------------TQLIILHLSQNSF  122 (126)
Q Consensus        90 ~l~l~~n~~--~~~~p~~l~~~------------------~~L~~l~l~~n~i  122 (126)
                      .|++..+..  -+.+|..+..+                  ++|++|++++|..
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~  168 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN  168 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence            444444332  11344333222                  3788899887653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.00051  Score=46.85  Aligned_cols=40  Identities=15%  Similarity=0.119  Sum_probs=20.3

Q ss_pred             CCCceEEEEcCCCC-cccccCCCccccccccCceeEeccCcc
Q 037844            9 QRNHVIKLDLPSSC-LQDSINSSSGLFKLIHLKWLILLFNKF   49 (126)
Q Consensus         9 ~~~~l~~L~ls~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~~   49 (126)
                      +-+.++.|+++.+. ++ +.+..--+.+++.|..|+++||..
T Consensus       232 kN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             ccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhc
Confidence            33566677776643 22 110011134556677777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.44  E-value=0.002  Score=26.24  Aligned_cols=10  Identities=30%  Similarity=0.295  Sum_probs=4.1

Q ss_pred             ceeEeccCcc
Q 037844           40 KWLILLFNKF   49 (126)
Q Consensus        40 ~~L~l~~n~~   49 (126)
                      ++|++++|.+
T Consensus         3 ~~Ldls~n~l   12 (22)
T PF00560_consen    3 EYLDLSGNNL   12 (22)
T ss_dssp             SEEEETSSEE
T ss_pred             cEEECCCCcC
Confidence            3444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.29  E-value=0.0071  Score=41.00  Aligned_cols=114  Identities=13%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             CCceEEEEcCCCCcccccCC--CccccccccCceeEeccCccc--Ccc-------hhhhhhCCCCCCEEEcccCcCcCcC
Q 037844           10 RNHVIKLDLPSSCLQDSINS--SSGLFKLIHLKWLILLFNKFS--GFE-------ILIKIINLSRLSYLNLFYSSLSGGL   78 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~--~~~~~~l~~L~~L~l~~n~~~--~~~-------~~~~~~~l~~L~~l~l~~~~~~~~~   78 (126)
                      ...++.+++|+|.+..+...  ...+.+-.+|+...++.-...  .+.       +.+.+.+|++++..+++.|.+...+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            45788899999988754200  122333455666665543221  011       2334557889999999999888777


Q ss_pred             Ccccc----CCCCCcEEEeecCccCc----cchHH---------HhcCCCCcEEEccCCcCe
Q 037844           79 PVSTK----YLRSLKVLAIIKCNFCS----RITFL---------LRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        79 ~~~~~----~l~~L~~l~l~~n~~~~----~~p~~---------l~~~~~L~~l~l~~n~i~  123 (126)
                      |+.++    ....|.+|.+++|.+.-    .+...         .+.-|.|+.+..+.|++.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            66543    44678888888886641    22211         123467888888887764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.97  E-value=0.066  Score=31.38  Aligned_cols=105  Identities=11%  Similarity=-0.001  Sum_probs=54.4

Q ss_pred             cCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844            7 KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR   86 (126)
Q Consensus         7 ~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~   86 (126)
                      ....++++.+.+.. .+...-  ...+..+..++.+.+..+ +. ..-...+..+..++.+.++. .+.......|..++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~--~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIG--ENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE---TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC-CeeEeC--hhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence            34445788888875 345333  456777778999988775 44 13334566777889998876 33323334566688


Q ss_pred             CCcEEEeecCccCccchHHHhcCCCCcEEEccC
Q 037844           87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQ  119 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~  119 (126)
                      .++.+.+..+ +...-...+.++ .++.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            8888888665 442333345555 788777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.0018  Score=44.32  Aligned_cols=58  Identities=19%  Similarity=0.077  Sum_probs=23.6

Q ss_pred             CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecC
Q 037844           39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKC   96 (126)
Q Consensus        39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n   96 (126)
                      ++++|+++..++...+..-+..|.+|+.+.+.++++.+.+...+.+-..|+.++++.+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            4444444444431122222333444444444444444333333333344444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.42  E-value=0.069  Score=31.31  Aligned_cols=96  Identities=16%  Similarity=0.066  Sum_probs=47.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ....++.+.+..+ +....  ...+..++.++.+.+..+...  .....+..++.++.++++.+ +.......+..+ .+
T Consensus        33 ~~~~l~~i~~~~~-~~~i~--~~~F~~~~~l~~i~~~~~~~~--i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   33 NCTSLKSINFPNN-LTSIG--DNAFSNCKSLESITFPNNLKS--IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             T-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEETSTT-E--E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred             ccccccccccccc-ccccc--eeeeecccccccccccccccc--cccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence            3357889999885 55333  456777778999999763322  23345666899999999765 443334456666 88


Q ss_pred             cEEEeecCccCccchHHHhcCCCC
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQL  112 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L  112 (126)
                      +.+.+.. .+.......|.++++|
T Consensus       106 ~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  106 KEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -EEE-TT-B-SS----GGG-----
T ss_pred             eEEEECC-CccEECCccccccccC
Confidence            8887764 4332334455565555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.35  E-value=0.013  Score=22.27  Aligned_cols=11  Identities=18%  Similarity=0.386  Sum_probs=3.6

Q ss_pred             CcEEEeecCcc
Q 037844           88 LKVLAIIKCNF   98 (126)
Q Consensus        88 L~~l~l~~n~~   98 (126)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=0.0039  Score=40.13  Aligned_cols=80  Identities=19%  Similarity=0.055  Sum_probs=41.4

Q ss_pred             CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc-CcCCcccc-CCCCCcEEEeecCc-cCccchHHHhcCCCCcEE
Q 037844           39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS-GGLPVSTK-YLRSLKVLAIIKCN-FCSRITFLLRNLTQLIIL  115 (126)
Q Consensus        39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~-~l~~L~~l~l~~n~-~~~~~p~~l~~~~~L~~l  115 (126)
                      ++.++.+++.+.. .--+.+..++.++.+.+.++..- +-..+.++ -.++|+.|++++|. +++.--..+.++++|+.|
T Consensus       103 IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            5566666665541 22344555666666665555332 11111122 23567777777664 454444556666666666


Q ss_pred             EccC
Q 037844          116 HLSQ  119 (126)
Q Consensus       116 ~l~~  119 (126)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.83  E-value=0.025  Score=23.29  Aligned_cols=15  Identities=13%  Similarity=0.266  Sum_probs=6.2

Q ss_pred             CCcEEEeecCccCcc
Q 037844           87 SLKVLAIIKCNFCSR  101 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~  101 (126)
                      +|+.|++++|.+++.
T Consensus         3 ~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    3 NLETLDLSNNQITDE   17 (24)
T ss_dssp             T-SEEE-TSSBEHHH
T ss_pred             CCCEEEccCCcCCHH
Confidence            444555555554433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.62  E-value=0.014  Score=37.73  Aligned_cols=84  Identities=19%  Similarity=0.093  Sum_probs=58.2

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhC-CCCCCEEEcccC-cCcCcCCccccCCCCCc
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIIN-LSRLSYLNLFYS-SLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~l~l~~~-~~~~~~~~~~~~l~~L~   89 (126)
                      .++.++-+++.+..+-  -..+..++.++.|.+.+|.-.++..-+.++. .++|+.|++++| +++......+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            4777888888877654  4566777888888888887543333444443 478999999966 66655555566778888


Q ss_pred             EEEeecCc
Q 037844           90 VLAIIKCN   97 (126)
Q Consensus        90 ~l~l~~n~   97 (126)
                      .|.+..-+
T Consensus       180 ~L~l~~l~  187 (221)
T KOG3864|consen  180 RLHLYDLP  187 (221)
T ss_pred             HHHhcCch
Confidence            77775543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.20  E-value=0.11  Score=21.73  Aligned_cols=14  Identities=14%  Similarity=0.271  Sum_probs=8.1

Q ss_pred             CCCcEEEeecCccC
Q 037844           86 RSLKVLAIIKCNFC   99 (126)
Q Consensus        86 ~~L~~l~l~~n~~~   99 (126)
                      +.|+.|++++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34556666666555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.20  E-value=0.11  Score=21.73  Aligned_cols=14  Identities=14%  Similarity=0.271  Sum_probs=8.1

Q ss_pred             CCCcEEEeecCccC
Q 037844           86 RSLKVLAIIKCNFC   99 (126)
Q Consensus        86 ~~L~~l~l~~n~~~   99 (126)
                      +.|+.|++++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34556666666555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=91.07  E-value=0.24  Score=21.00  Aligned_cols=14  Identities=50%  Similarity=0.541  Sum_probs=8.7

Q ss_pred             CCCcEEEccCCcCe
Q 037844          110 TQLIILHLSQNSFR  123 (126)
Q Consensus       110 ~~L~~l~l~~n~i~  123 (126)
                      .+|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=90.73  E-value=0.084  Score=37.83  Aligned_cols=13  Identities=23%  Similarity=0.590  Sum_probs=6.0

Q ss_pred             CCCCcEEEeecCc
Q 037844           85 LRSLKVLAIIKCN   97 (126)
Q Consensus        85 l~~L~~l~l~~n~   97 (126)
                      ++.|+.+.+.++.
T Consensus       268 c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  268 CPNLETLSLSNCS  280 (482)
T ss_pred             CCCcceEccCCCC
Confidence            3445555444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.42  E-value=0.28  Score=35.15  Aligned_cols=108  Identities=25%  Similarity=0.120  Sum_probs=62.9

Q ss_pred             CCCceEEEEcCCC-CcccccC--CCccccccccCceeEeccCc-ccCcchhhhhh-CCCCCCEEEcccCc-CcCcCCccc
Q 037844            9 QRNHVIKLDLPSS-CLQDSIN--SSSGLFKLIHLKWLILLFNK-FSGFEILIKII-NLSRLSYLNLFYSS-LSGGLPVST   82 (126)
Q Consensus         9 ~~~~l~~L~ls~n-~l~~~~~--~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~-~l~~L~~l~l~~~~-~~~~~~~~~   82 (126)
                      ..+++++|+++++ ......+  .......++.|+.++++++. +++ ..-..++ .++.|+.+.+.++. +++..-..+
T Consensus       212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            3467889998873 2111110  01223445778899999887 553 3333343 37899999977666 443322222


Q ss_pred             -cCCCCCcEEEeecCccCc--cchHHHhcCCCCcEEEc
Q 037844           83 -KYLRSLKVLAIIKCNFCS--RITFLLRNLTQLIILHL  117 (126)
Q Consensus        83 -~~l~~L~~l~l~~n~~~~--~~p~~l~~~~~L~~l~l  117 (126)
                       ..++.|+.++++++....  .+......+++++.+.+
T Consensus       291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence             457889999999886532  13333445566555443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=88.13  E-value=0.37  Score=20.62  Aligned_cols=14  Identities=36%  Similarity=0.368  Sum_probs=9.1

Q ss_pred             CCCcEEEccCCcCe
Q 037844          110 TQLIILHLSQNSFR  123 (126)
Q Consensus       110 ~~L~~l~l~~n~i~  123 (126)
                      ++|++|++++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45667777777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.30  E-value=0.0077  Score=39.93  Aligned_cols=85  Identities=19%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCc
Q 037844           34 FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLI  113 (126)
Q Consensus        34 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~  113 (126)
                      ......+.||++.|+..  ..-..+..++.+..++++-|++. ..|..+++...+..+++..|... ..|-.++..+.++
T Consensus        39 ~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            44566788888888875  34455666788888899888876 66777887777778877777666 6677778888888


Q ss_pred             EEEccCCcC
Q 037844          114 ILHLSQNSF  122 (126)
Q Consensus       114 ~l~l~~n~i  122 (126)
                      +++.-.|.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            888777765

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.83  E-value=0.58  Score=19.84  Aligned_cols=14  Identities=14%  Similarity=0.278  Sum_probs=9.2

Q ss_pred             CceEEEEcCCCCcc
Q 037844           11 NHVIKLDLPSSCLQ   24 (126)
Q Consensus        11 ~~l~~L~ls~n~l~   24 (126)
                      ++++.|++++|+++
T Consensus         2 ~~L~~L~vs~N~Lt   15 (26)
T smart00364        2 PSLKELNVSNNQLT   15 (26)
T ss_pred             cccceeecCCCccc
Confidence            35666777777666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 5e-13
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 10  RNHVIKLDLPSSCLQDSINS-SSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLN 68
            + V  +DL S  L    ++ SS L  L  L+ L L  +  +G   +      + L+ L+
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLD 106

Query: 69  LFYSSLSGGLPVSTK--YLRSLKVLAIIKCNFCSRITF-LLRNLTQLIILHLSQNSFRGR 125
           L  +SLSG +   T       LK L +                L  L +L LS NS  G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 126 I 126
            
Sbjct: 167 N 167

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LDL  + L   + + + L     LK+L +  N       +   + L+ L  L+L  +S+S
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 76  GGLPVSTKY---LRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           G   V          LK LAI        +         L  L +S N+F   I
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSG--FEILIKIINLSRLSYLNLFYSS 73
           L++ S+ L      S GL KL  L+ L L  N  SG      +       L +L +  + 
Sbjct: 131 LNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 74  LSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           +SG + VS     +L+ L +   NF + I FL  + + L  L +S N   G  
Sbjct: 190 ISGDVDVSR--CVNLEFLDVSSNNFSTGIPFLG-DCSALQHLDISGNKLSGDF 239

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LDL S+     I  +        L+ L L  N F+G +I   + N S L  L+L ++ LS
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLS 431

Query: 76  GGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           G +P S   L  L+ L +        I   L  +  L  L L  N   G I
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 33  LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA 92
           L  L  L+ L L  N   G EI  +++ +  L  L L ++ L+G +P       +L  ++
Sbjct: 438 LGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 93  IIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           +        I   +  L  L IL LS NSF G I
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 7e-10
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LD+  + L    + +  +     LK L +  N+F G    I  + L  L YL+L  +  +
Sbjct: 228 LDISGNKLSGDFSRA--ISTCTELKLLNISSNQFVGP---IPPLPLKSLQYLSLAENKFT 282

Query: 76  GGLPVS-TKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           G +P   +    +L  L +   +F   +     + + L  L LS N+F G +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLS-RLSYLNLFYSSL 74
           L L S+     +   + L K+  LK L L FN+FSG E+   + NLS  L  L+L  ++ 
Sbjct: 323 LALSSNNFSGELPMDT-LLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNF 380

Query: 75  SGGLPVS--TKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           SG +  +       +L+ L +    F  +I   L N ++L+ LHLS N   G I
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           L +  + +   ++    + + ++L++L +  N FS    +  + + S L +L++  + LS
Sbjct: 183 LAISGNKISGDVD----VSRCVNLEFLDVSSNNFST--GIPFLGDCSALQHLDISGNKLS 236

Query: 76  GGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           G    +      LK+L I    F   I  L   L  L  L L++N F G I
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           L L  +     I           L  L L  N F G  +     + S L  L L  ++ S
Sbjct: 274 LSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFS 331

Query: 76  GGLPVST-KYLRSLKVLAIIKCNFCSRITFLLRNLT-QLIILHLSQNSFRGRI 126
           G LP+ T   +R LKVL +    F   +   L NL+  L+ L LS N+F G I
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 1/111 (0%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
                + L+     S  L +L       +    + G        N   + +L++ Y+ LS
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMFLDMSYNMLS 645

Query: 76  GGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           G +P     +  L +L +   +    I   + +L  L IL LS N   GRI
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 3/88 (3%)

Query: 41  WLILLFNKFSGFEILIKIINLSRLSYLNLFYS--SLSGGLPVSTKYLRSLKVLAIIKCNF 98
              +  N  +G +  + I N       +   +     G        L +     I    +
Sbjct: 562 SGKIAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 99  CSRITFLLRNLTQLIILHLSQNSFRGRI 126
               +    N   ++ L +S N   G I
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 25/96 (26%)

Query: 31  SGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90
           SGL    +L W+ L  N+ +G EI   I  L  L+ L L  +S SG +P           
Sbjct: 484 SGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAE--------- 533

Query: 91  LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                          L +   LI L L+ N F G I
Sbjct: 534 ---------------LGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 23/118 (19%)

Query: 31  SGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLP----------- 79
             + +L +L  L L  N FSG  I  ++ +   L +L+L  +  +G +P           
Sbjct: 508 KWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 80  -----------VSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                      +    ++     A     F    +  L  L+     +++   + G  
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 9   QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILL-FNKFSGFEILIKIINLSRLSYL 67
           Q   V  LDL    L       S L  L +L +L +   N   G  I   I  L++L YL
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYL 106

Query: 68  NLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
            + ++++SG +P     +++L  L          +   + +L  L+ +    N   G I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 31  SGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLS-YLNLFYSSLSGGLPVSTKYLRSLK 89
             +  L +L  +    N+ SG  I     + S+L   + +  + L+G +P +   L +L 
Sbjct: 143 PSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200

Query: 90  VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
            + + +       + L  +      +HL++NS    +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LDL  + L      S   F    LK+L L FN      +    + L +L +L+  +S+L 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLK 409

Query: 76  GGLPVST-KYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                S    LR+L  L I   +       +   L+ L +L ++ NSF+   
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 11  NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLF 70
                LDL  + L+   + S   F    L+ L L   +    E      +LS LS L L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILT 84

Query: 71  YSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
            + +      +   L SL+ L  ++ N  S   F + +L  L  L+++ N  + 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LD+  +  + + N       L  L+ L +  N F    +      L  L++L+L    L 
Sbjct: 426 LDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 76  GGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
              P +   L SL+VL +   NF S  TF  + L  L +L  S N      
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 27  INSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR 86
           I  SS    L  L+ L    +           ++L  L YL++ ++            L 
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 87  SLKVLAIIKCNFCSRI-TFLLRNLTQLIILHLSQNSFRG 124
           SL+VL +   +F       +   L  L  L LSQ     
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 5/115 (4%)

Query: 15  KLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL 74
           KL    + L    N    +  L  LK L +  N    F++     NL+ L +L+L  + +
Sbjct: 104 KLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 75  SGGLPVSTKYLRSLKVLAI---IKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                   + L  + +L +   +  N  + I        +L  L L  N     +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 35  KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSG-------GLPVSTKYLRS 87
               ++ L    NK      +    ++S +S ++  Y+ +          L  +     +
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 88  LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
           +  + +           L    + L  ++L  N    
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 1/102 (0%)

Query: 23  LQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVST 82
           L+D   + +       ++ + + +N    F +   +  + +L  L   Y+ L  G   + 
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAF 349

Query: 83  KYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
                L  L +                 Q+  L  + N  + 
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 14/119 (11%), Positives = 22/119 (18%), Gaps = 7/119 (5%)

Query: 9   QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFE---ILIKIINLSRLS 65
               V  L L        +     + +L  L+ L L  +     E       I       
Sbjct: 79  SNGRVTGLSLEGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 66  YLNLFYSSLSGGLPVSTKYLR--SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122
                                   L    I        I    R   +   +    N+ 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 16  LDLPSSCLQDSINSSSGL----FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFY 71
           + L  + + +  N  + +     +L  L+ +    + F+                 N  Y
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDY 476

Query: 72  SSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
           +       +S   L+ L  + +  C   +++   L +L +L  L+++ N    
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 9/92 (9%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 36  LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSG-----GLPVSTKYLRSLKV 90
              ++ L    NK      +    ++  +  ++  Y+ +          +      +   
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 91  LAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122
           + +         T L    + +  + LS N  
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 7/103 (6%)

Query: 28  NSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87
                      L  + L FNK +      +   L  LS +++ Y+  S   P        
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQ 777

Query: 88  LKVLAIIKCNFCSRITFL------LRNLTQLIILHLSQNSFRG 124
           LK   I           L      +     LI L +  N  R 
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/110 (10%), Positives = 25/110 (22%), Gaps = 11/110 (10%)

Query: 26  SINSSSGLFKLIHLKWLILLFNKFSGF----EILIKIINLSRLSYLNLFYSSLSGGLPVS 81
            I +      +  +  +   +NK           +        S + L Y+ +       
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 82  TKYLRSLKVL-------AIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
                 +  +         I  N         +N   L  + L  N    
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 11  NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLF 70
            ++  L+L  + L+    ++    +   L  L + FN  S  E  +    L  L  LNL 
Sbjct: 25  TNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQ 81

Query: 71  YSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
           ++ LS     +  +  +L  L ++  +              LI L LS N    
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 2/117 (1%)

Query: 12  HVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNL 69
            +  L L +  L  S+     L      ++ L L  ++ S         +  + L+ L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 70  FYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
            Y++L+     S  +L  L+   +   N     +  L  L  +  L+L ++  +  I
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           L L    L++  +S S    L +L  L L  N  +     + +  L +L  L+L +++L+
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQHNNLA 517

Query: 76  --------GGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
                   GG     K L  L +L +    F      + ++L +L I+ L  N+   
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 15  KLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL 74
           +L L S+ +Q   N+     K  +L  L L  N  S    L   + L  L  L L  + +
Sbjct: 101 ELHLMSNSIQKIKNNP--FVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKI 157

Query: 75  SGGLP--VSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                  +      SLK L +               + +L  L L+       +
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 9   QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLN 68
               +  L L +S L  + N++    K  +L  L L +N  +          L +L Y  
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFF 278

Query: 69  LFYSSLSGGLPVSTKYLRSLKVL---------AIIKCNFCSRITFLLRNLTQLIILHLSQ 119
           L Y+++      S   L +++ L         +I   +      F  + L  L  L++  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 120 NSFRG 124
           N   G
Sbjct: 339 NDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 15  KLDLPSSCLQDSINSSSGLFKLIH--LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS 72
            L L +S       ++     L H  L  L L  NK S  E       L  L  L+L  +
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGLN 415

Query: 73  SLSGGLPVST-KYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
            +   L     + L ++  + +    +          +  L  L L + + + 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LDL    ++ S   +  L  L HL+ L L +N+    +         +L  L+L ++ L 
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLK 413

Query: 76  GGLPVST-KYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124
                S  + L  LKVL +           L   L  L  L+L  N F  
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 15  KLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL 74
                    +D   +       + ++ + L  + F            S L  L+L  + L
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHL 290

Query: 75  SGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           S  LP     L +LK L +    F +       N   L  L +  N+ R  +
Sbjct: 291 SE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 36  LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIK 95
           LI+L +L L   +           +  RL  L L  + L      +    ++LK L  I+
Sbjct: 56  LINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 96  CNFCSRITFLLRNLTQLIILHLSQNSFRG 124
               S     L N   L  L+L  N    
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISS 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 29/112 (25%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 16  LDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75
           LDL  + L  S   S        L+ L L FN             L  L +L+  +S+L 
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM--GLEELQHLDFQHSTLK 412

Query: 76  GGLPVST-KYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
                S    L  L  L I   N       +   LT L  L ++ NSF+   
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 30  SSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89
           S+    L  L+ L    +           ++L +L YL++ Y++           L SL 
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 90  VLAIIKCNFCSRI-TFLLRNLTQLIILHLSQNSFRG 124
            L +   +F     + +  N T L  L LS+     
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 27  INSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR 86
             + + +  L +L+ L ++    +  +I   +  L+ L+ L++ +S+    +      L 
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 87  SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQN 120
            +  + +      + I   L+ L +L  L++  +
Sbjct: 137 KVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 26  SINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYL 85
           ++   +G+    ++K L +     + +  +     LS L  L +    ++     +   L
Sbjct: 55  NVTDLTGIEYAHNIKDLTINNIHATNYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 86  RSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS 121
            SL +L I        I   +  L ++  + LS N 
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 31  SGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90
           + +  L +LK L +  +  S   +   I +L +L  L+L   +     P        LK 
Sbjct: 200 ASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 91  LAIIKCNFCSRITFLLRNLTQLIILHLSQNS 121
           L +  C+    +   +  LTQL  L L    
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 25  DSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVST-- 82
           ++++    L ++ HL+ LIL  N+FS             L  L L  + L          
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 83  ---KYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123
              + L  L+VL +      S    +  +LT L  L L+ N   
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.64
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.63
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.55
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.55
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.53
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.52
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.52
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.51
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.51
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.39
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.33
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.65
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.92
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.45
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.15
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.86
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.41

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=5.7e-20  Score=123.62  Aligned_cols=120  Identities=23%  Similarity=0.296  Sum_probs=103.8

Q ss_pred             CccccCCC--CceEEEEcCCCCccc--ccCCCccccccccCceeEecc-CcccCcchhhhhhCCCCCCEEEcccCcCcCc
Q 037844            3 DQAEKKQR--NHVIKLDLPSSCLQD--SINSSSGLFKLIHLKWLILLF-NKFSGFEILIKIINLSRLSYLNLFYSSLSGG   77 (126)
Q Consensus         3 ~~~~~~~~--~~l~~L~ls~n~l~~--~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~   77 (126)
                      ||.|....  .+++.|++++|.+.+  ..  |..+..+++|++|++++ |.+.+ .+|..+..+++|+++++++|.+++.
T Consensus        40 gv~C~~~~~~~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~  116 (313)
T 1ogq_A           40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             TEEECCSSSCCCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred             ceEeCCCCCCceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCc
Confidence            67786543  789999999999987  77  78899999999999995 88874 6788888999999999999999878


Q ss_pred             CCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           78 LPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        78 ~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      .|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.++|.
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  164 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc
Confidence            888888899999999999999888888888889999999999988764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.5e-18  Score=109.84  Aligned_cols=113  Identities=16%  Similarity=0.110  Sum_probs=82.6

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++|++|++++|.+++..  +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..|..+..+++|
T Consensus        55 ~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             GCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             cCCCCCEEECCCCcCCEEC--HHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence            3456777777777777554  4567777777777777777762 445556777788888888887776666777777888


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.+++..|..+..+++|+.+++++|++++
T Consensus       132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            888888888876667777777888888888887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=2.8e-18  Score=108.17  Aligned_cols=112  Identities=22%  Similarity=0.122  Sum_probs=99.9

Q ss_pred             CceEEEEcCCCCcccccCCCc-cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSS-GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++++|++++|.+....  +. .+..+++|++|++++|.+++ ..|..+..+++|+++++++|++++..+..+..+++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBC--CSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCEEECCCCcCCccC--CccccccCCCCCEEECCCCCCCC-cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            48999999999998554  33 37889999999999999984 6678899999999999999999987777789999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      .|++++|++++..|..+..+++|+++++++|++++.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999999988898999999999999999998764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.76  E-value=3.4e-18  Score=126.57  Aligned_cols=90  Identities=30%  Similarity=0.365  Sum_probs=69.4

Q ss_pred             cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEE
Q 037844           36 LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIIL  115 (126)
Q Consensus        36 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l  115 (126)
                      ++.|++|++++|.++| .+|..++.++.|+.+++++|.+++.+|..++.++.|+.|++++|++++.+|..+..+++|+++
T Consensus       631 l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             cccccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            4556667777777764 567777777888888888888877778778888888888888888888888888888888888


Q ss_pred             EccCCcCeecC
Q 037844          116 HLSQNSFRGRI  126 (126)
Q Consensus       116 ~l~~n~i~~~~  126 (126)
                      ++++|+++|.|
T Consensus       710 ~ls~N~l~g~i  720 (768)
T 3rgz_A          710 DLSNNNLSGPI  720 (768)
T ss_dssp             ECCSSEEEEEC
T ss_pred             ECcCCcccccC
Confidence            88888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=9.1e-18  Score=107.90  Aligned_cols=109  Identities=17%  Similarity=0.106  Sum_probs=58.5

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      ++++|++++|.+....  +..+..+++|++|++++|.++ ...|..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus        33 ~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence            4566666666655433  334555556666666666555 2334555555556666665555553323334455555555


Q ss_pred             EeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      ++++|.+.+..|..+..+++|++|++++|.++
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            55555555444445555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.2e-17  Score=107.37  Aligned_cols=113  Identities=19%  Similarity=0.148  Sum_probs=100.0

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++|++|++++|++....  |..+..+++|++|++++|.++ ...+..+..+++|+.+++++|.+++..+..+..+++|
T Consensus        54 ~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             TCTTCCEEECCSSCCCEEC--TTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCcCCCcC--HHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence            4578999999999999777  788999999999999999998 2334446789999999999999998878889999999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.+++..+..+..+++|+.+++++|++..
T Consensus       131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999999997777778899999999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.6e-17  Score=107.33  Aligned_cols=110  Identities=23%  Similarity=0.132  Sum_probs=69.6

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+..  +..+..+++|++|++++|.+. ...+..+..+++|+.+++++|.+++..+..+..+++|+.
T Consensus        40 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence            46677777777777555  556666777777777777765 222334556677777777777666444444566666666


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+. .+|..+..+++|++|++++|.+++
T Consensus       117 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A          117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred             EeccCCccc-ccCcccccCCCCCEEECCCCcCCc
Confidence            666666666 556666666666666666666553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=4.1e-18  Score=114.56  Aligned_cols=114  Identities=22%  Similarity=0.277  Sum_probs=91.7

Q ss_pred             CCCceEEEEcCC-CCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844            9 QRNHVIKLDLPS-SCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS   87 (126)
Q Consensus         9 ~~~~l~~L~ls~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~   87 (126)
                      ..+++++|++++ |.+.+..  |..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|.+++..|..+..+++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             CCCCCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            446788888884 7777777  7778888888888888888873 67777888888888888888888777888888888


Q ss_pred             CcEEEeecCccCccchHHHhcCC-CCcEEEccCCcCeec
Q 037844           88 LKVLAIIKCNFCSRITFLLRNLT-QLIILHLSQNSFRGR  125 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~~l~~~~-~L~~l~l~~n~i~~~  125 (126)
                      |++|++++|.+++.+|..+..++ +|+++++++|.++|.
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence            88888888888878888888777 788888888887754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=1.1e-17  Score=113.14  Aligned_cols=112  Identities=22%  Similarity=0.183  Sum_probs=95.3

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.++ .+  |..+..+++|++|++++|.++  .+|..+..+++|+++++++|.+.+..|..++.+++|+
T Consensus       182 l~~L~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SL--PASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             STTCCEEEEEEECCC-CC--CGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             CCCCCEEECcCCCcC-cc--hHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            567888888888887 66  777888888999999999887  3666788889999999999888888888888899999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCeecC
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI  126 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~~  126 (126)
                      .|++++|.+.+.+|..+..+++|++|++++|++.+.+
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            9999998888888888888999999999998887754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=2.1e-17  Score=104.30  Aligned_cols=111  Identities=22%  Similarity=0.188  Sum_probs=96.7

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.++ .+  |..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus        30 ~~~l~~L~L~~n~i~-~i--p~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-LV--PKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             CTTCCEEECCSSCCC-SC--CGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCc-hh--HHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            357999999999998 66  7788999999999999999983 5566788999999999999999977777899999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|.++...+..+..+++|+.+++++|++..
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999999995555568889999999999998753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.74  E-value=1.2e-17  Score=121.45  Aligned_cols=118  Identities=15%  Similarity=0.221  Sum_probs=107.0

Q ss_pred             CCccccCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcc--------------------------------
Q 037844            2 SDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKF--------------------------------   49 (126)
Q Consensus         2 ~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~--------------------------------   49 (126)
                      .||.|+.. .+|+.|+++++.+.+.+  |+++..+++|++|++++|.+                                
T Consensus        73 ~GV~C~~~-~~V~~L~L~~~~l~g~l--p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~  149 (636)
T 4eco_A           73 PGVSLNSN-GRVTGLSLEGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF  149 (636)
T ss_dssp             TTEEECTT-CCEEEEECTTSCCEEEE--CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHH
T ss_pred             CCeEEcCC-CCEEEEEecCcccCCcC--ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhh
Confidence            48899765 79999999999999999  89999999999999998843                                


Q ss_pred             ----------------------------------------------cCcchhhhhhCCCCCCEEEcccCcCcCc------
Q 037844           50 ----------------------------------------------SGFEILIKIINLSRLSYLNLFYSSLSGG------   77 (126)
Q Consensus        50 ----------------------------------------------~~~~~~~~~~~l~~L~~l~l~~~~~~~~------   77 (126)
                                                                    +  .+|..++.+++|+++++++|.+++.      
T Consensus       150 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~--~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  227 (636)
T 4eco_A          150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT--FVSKAVMRLTKLRQFYMGNSPFVAENICEAW  227 (636)
T ss_dssp             TCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE--EECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCc--cCCHHHhcccCCCEEECcCCccccccccccc
Confidence                                                          2  2677889999999999999999875      


Q ss_pred             -----------CCcccc--CCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCc-Cee
Q 037844           78 -----------LPVSTK--YLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS-FRG  124 (126)
Q Consensus        78 -----------~~~~~~--~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~-i~~  124 (126)
                                 +|..++  .+++|++|++++|.+.+.+|..++++++|++|++++|. ++|
T Consensus       228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG  288 (636)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred             cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence                       899988  99999999999999999999999999999999999998 887

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=4.4e-17  Score=107.52  Aligned_cols=89  Identities=25%  Similarity=0.203  Sum_probs=37.8

Q ss_pred             cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCc
Q 037844           34 FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLI  113 (126)
Q Consensus        34 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~  113 (126)
                      ..+++|++|++++|.+++ ..+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus       130 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            334444444444444431 2222233444444444444444433333334444444444444444433333344444455


Q ss_pred             EEEccCCcCe
Q 037844          114 ILHLSQNSFR  123 (126)
Q Consensus       114 ~l~l~~n~i~  123 (126)
                      ++++++|++.
T Consensus       209 ~L~l~~N~~~  218 (272)
T 3rfs_A          209 YIWLHDNPWD  218 (272)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEccCCCcc
Confidence            5555544443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=3.2e-17  Score=101.91  Aligned_cols=113  Identities=24%  Similarity=0.130  Sum_probs=95.8

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|++.+..  +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence            368999999999998554  5567889999999999999983 4445578899999999999999866666678999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      .+++++|.+++..+..+..+++|+++++++|++++.
T Consensus       104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            999999999955555568899999999999998763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=2.5e-17  Score=121.96  Aligned_cols=112  Identities=29%  Similarity=0.413  Sum_probs=68.0

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++.|++++|.+.+..  |..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|++.+..|..++.+++|+.
T Consensus       442 ~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             TTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             CCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            44555555555555555  5555555566666666666553 45555666666666666666666566666666666666


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      |++++|++.+.+|..+..+++|+++++++|+++|.
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence            66666666666666666666666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=4.1e-17  Score=106.49  Aligned_cols=109  Identities=25%  Similarity=0.106  Sum_probs=43.1

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++|++|++++|.+.+..  +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus        59 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  135 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE  135 (251)
T ss_dssp             TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCEEECCCCcCCccC--HhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence            34444444444444332  3333444444444444444431 22222333444444444444443222222333444444


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      |++++|.+.+..+..+..+++|++|++++|.+
T Consensus       136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A          136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            44444444422222333344444444444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=1.5e-17  Score=100.72  Aligned_cols=111  Identities=21%  Similarity=0.178  Sum_probs=94.8

Q ss_pred             CCceEEEEcCCCCcc-cccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844           10 RNHVIKLDLPSSCLQ-DSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .++++.|++++|.+. +..  |..+..+++|++|++++|.+++  + ..+..+++|+++++++|.+++..|..+..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKL--EGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBC--CSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHH--HHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            368999999999988 566  7777889999999999999983  3 668889999999999999987677777779999


Q ss_pred             cEEEeecCccCcc-chHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSR-ITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~-~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +++++++|.+++. .+..+..+++|+++++++|.+++.
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            9999999999853 347888999999999999988763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=7.7e-17  Score=101.80  Aligned_cols=111  Identities=19%  Similarity=0.205  Sum_probs=78.3

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCc-CcCcCCccccCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSS-LSGGLPVSTKYLR   86 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l~   86 (126)
                      ...+++++|++++|.+.+..  +..+..+++|++|++++|.+. ...+..+..+++|+++++++|. ++ .++ .+..++
T Consensus        85 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~  159 (197)
T 4ezg_A           85 SGLSNLERLRIMGKDVTSDK--IPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP  159 (197)
T ss_dssp             TTCTTCCEEEEECTTCBGGG--SCCCTTCTTCCEEECCSSBCB-GGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS
T ss_pred             hcCCCCCEEEeECCccCccc--ChhhcCCCCCCEEEecCCccC-cHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC
Confidence            44567788888888777655  567777788888888888876 2456777778888888888886 54 334 577778


Q ss_pred             CCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +|+.|++++|.+++ ++ .+..+++|++|++++|+|.+.
T Consensus       160 ~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~~  196 (197)
T 4ezg_A          160 ELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGGK  196 (197)
T ss_dssp             SCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-----
T ss_pred             CCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCCc
Confidence            88888888888774 44 567778888888888887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=5.7e-17  Score=105.83  Aligned_cols=114  Identities=19%  Similarity=0.071  Sum_probs=98.9

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++|++|++++|.++...  +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|.+++..+..+..+++|
T Consensus        81 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCcCCEEECCCCcccccC--hhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence            4578999999999999655  5677889999999999999983 444556889999999999999986666678999999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +.|++++|.+.+..+..+..+++|+.+++++|++++.
T Consensus       158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999999977667888999999999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=1.2e-16  Score=105.51  Aligned_cols=116  Identities=27%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             cCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844            7 KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR   86 (126)
Q Consensus         7 ~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~   86 (126)
                      ....+++++|++++|.+++..  +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..++
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  157 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLP--NGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT  157 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hcCCCCCCEEECCCCccCccC--hhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence            345678999999999999665  5667889999999999999983 4555678899999999999999876666678999


Q ss_pred             CCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            999999999999977666788999999999999998864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=9.9e-17  Score=101.93  Aligned_cols=109  Identities=28%  Similarity=0.183  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      ++++|++++|.+....  +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..+++|++|
T Consensus        29 ~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            4555555555555332  2334445555555555555541 222223444555555555555443323333444444555


Q ss_pred             EeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      ++++|.+.+..+..+..+++|++|++++|.++
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            55444444333333344444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=5.3e-17  Score=104.31  Aligned_cols=113  Identities=18%  Similarity=0.015  Sum_probs=98.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ..+++|++++|.++...+ +..+..+++|++|++++|.++ ...+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus        32 ~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             TTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred             CCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence            467899999999996641 245788999999999999998 345557899999999999999998777777899999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      |++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence            99999999988788899999999999999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=3.7e-17  Score=100.77  Aligned_cols=109  Identities=20%  Similarity=0.193  Sum_probs=75.8

Q ss_pred             CceEEEEcCCCCcc-cccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQ-DSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      +++++|++++|.+. +.+  |..+..+++|++|++++|.+++  + ..+..+++|+++++++|.+.+..|..+..+++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i--~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKI--EGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TSCSEEECCSCBCBTTBC--SSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             ccCCEEECCCCCCChhhH--HHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            56788888888776 455  5566777777788887777762  3 5566777777777777777755565555677777


Q ss_pred             EEEeecCccCcc-chHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSR-ITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~-~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|.+++. .+..+..+++|++|++++|.+++
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence            777777777642 12566677777777777777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=1e-16  Score=101.83  Aligned_cols=114  Identities=22%  Similarity=0.124  Sum_probs=97.1

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|++....  +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..+++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence            4578999999999999554  4567889999999999999983 444557889999999999999986666667899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +.|++++|.+++..+..+..+++|+++++++|++.+.
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            9999999999966666688899999999999988764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.71  E-value=9.2e-17  Score=99.48  Aligned_cols=107  Identities=20%  Similarity=0.108  Sum_probs=90.9

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      +.+++++++|.++ .+  |..+.  +.+++|++++|.+++ ..|..+..+++|+++++++|++++..+..+..+++|++|
T Consensus        10 ~~~~l~~s~n~l~-~i--p~~~~--~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SV--PTGIP--TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSCCS-SC--CSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCCcC-cc--CccCC--CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            3578999999988 56  65553  789999999999983 557778899999999999999986666667899999999


Q ss_pred             EeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++++|++++..+..+..+++|++|++++|+++.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999999996656678899999999999998864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=9.9e-17  Score=103.58  Aligned_cols=112  Identities=21%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++|++|++++|++....  +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|+++ .+|..+..+++|
T Consensus        62 ~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  137 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL  137 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred             CccCCcEEECCCCCCCCcC--hhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence            4578999999999998544  4567889999999999999983 44555788999999999999998 778889999999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.+.+..+..+..+++|+.+++++|++.+
T Consensus       138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            999999999996655678899999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.70  E-value=9.2e-17  Score=112.25  Aligned_cols=113  Identities=23%  Similarity=0.143  Sum_probs=82.4

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+.+..  +..+..+++|++|++++|.+. ...+..+..+++|+.+++++|.+++..|..+..+++|+
T Consensus       298 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKID--DNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             CTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcccccC--hhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            356777777777777655  556777777777777777776 34466677777888888888877766677777778888


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      .|++++|++++..+..+..+++|+++++++|++++.
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            888888888755445567778888888888887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=4.1e-17  Score=117.49  Aligned_cols=110  Identities=24%  Similarity=0.125  Sum_probs=68.9

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|+++...  +..|..+++|++|++++|.++ ...+..|..+++|++|++++|++++..+..|..+++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            35677777777777444  456677777777777777776 233445666777777777777766444445666666666


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|.+++..+..++.+++|++|++++|.++
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence            666666666433334556666666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=7.1e-17  Score=120.93  Aligned_cols=120  Identities=17%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             CCccccCCCCceEEEEcCCCCcccccCCCccccccccCceeEe-ccCcccCc----------------------------
Q 037844            2 SDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLIL-LFNKFSGF----------------------------   52 (126)
Q Consensus         2 ~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l-~~n~~~~~----------------------------   52 (126)
                      .||.|+. ..+|+.|+++++.+.+.+  |+.+..++.|+.|++ ++|.+.|.                            
T Consensus       315 ~GV~C~~-~~~V~~L~Ls~~~L~G~i--p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~  391 (876)
T 4ecn_A          315 PGVDLDN-NGRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF  391 (876)
T ss_dssp             TTEEECT-TSCEEEEECTTTCCEEEE--CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred             CceEecC-CCCEEEEECccCCCCCcC--chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhh
Confidence            4788875 379999999999999999  899999999999999 66654321                            


Q ss_pred             -----------------------------------------------chhhhhhCCCCCCEEEcccCcCcC---------
Q 037844           53 -----------------------------------------------EILIKIINLSRLSYLNLFYSSLSG---------   76 (126)
Q Consensus        53 -----------------------------------------------~~~~~~~~l~~L~~l~l~~~~~~~---------   76 (126)
                                                                     .+|..++.+++|+.|++++|.+++         
T Consensus       392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~  471 (876)
T 4ecn_A          392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED  471 (876)
T ss_dssp             TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccc
Confidence                                                           067788999999999999999997         


Q ss_pred             --------cCCcccc--CCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCc-Cee
Q 037844           77 --------GLPVSTK--YLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS-FRG  124 (126)
Q Consensus        77 --------~~~~~~~--~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~-i~~  124 (126)
                              .+|..++  .+++|+.|++++|.+.+.+|..++.+++|+.|++++|+ ++|
T Consensus       472 ~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg  530 (876)
T 4ecn_A          472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA  530 (876)
T ss_dssp             TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred             cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence                    3888887  99999999999999999999999999999999999998 887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=1.5e-16  Score=106.30  Aligned_cols=112  Identities=26%  Similarity=0.255  Sum_probs=55.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+....  +..+..+++|++|++++|.+.+...|..+..+++|+.+++++|.+++..|..+..+++|+.
T Consensus       126 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TTCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            45555555555555443  3444445555555555555542123444445555555555555554444444445555555


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+++..+..+..+++|++|++++|.+++
T Consensus       204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             EECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            5555555553333344444555555555554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=9.5e-17  Score=108.62  Aligned_cols=109  Identities=18%  Similarity=0.219  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccC-----
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKY-----   84 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-----   84 (126)
                      .+++++|++++|.+. .+  |..+..+++|++|++++|.++  .+|..+..+++|+++++++|...+.+|..+..     
T Consensus       103 l~~L~~L~L~~n~l~-~l--p~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-EL--PDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GTTCSEEEEESSCCC-CC--CSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             CCCCCEEECCCCCcc-ch--hHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            346666677766666 55  566666677777777777665  45666666666777776666555555554432     


Q ss_pred             ----CCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           85 ----LRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        85 ----l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                          +++|+.|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence                555666666655555 555555555566666666555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.69  E-value=4.1e-16  Score=96.93  Aligned_cols=116  Identities=17%  Similarity=0.050  Sum_probs=93.3

Q ss_pred             CccccCCCC-ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc
Q 037844            3 DQAEKKQRN-HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS   81 (126)
Q Consensus         3 ~~~~~~~~~-~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~   81 (126)
                      ..+|+.... .-+.+++++|.+. .+  |..+.  +.|++|++++|.+++ ..|..+..+++|++|++++|++++..+..
T Consensus         3 ~~~CP~~C~C~~~~l~~~~n~l~-~i--P~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~   76 (174)
T 2r9u_A            3 SAGCPSQCSCDQTLVNCQNIRLA-SV--PAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGV   76 (174)
T ss_dssp             CCSSCTTSEECSSEEECCSSCCS-SC--CSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCCCCCEECCcEEEeCCCCCC-cc--CCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhH
Confidence            345654322 2368999999987 66  66554  789999999999983 55778889999999999999998654555


Q ss_pred             ccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           82 TKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        82 ~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +..+++|+.|++++|.+.+..+..+..+++|++|++++|++..
T Consensus        77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            7899999999999999995555568899999999999998863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=4.4e-16  Score=102.71  Aligned_cols=112  Identities=27%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+....  +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+.+..+..+..+++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             CTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             ccCCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            355666666666665443  345556666666666666665 23344566666667777666666644444566777788


Q ss_pred             EEEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|.+.+ .+|..+..+++|++|++++|.+++
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            88888887775 357777888888888888887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=3.2e-16  Score=104.45  Aligned_cols=109  Identities=27%  Similarity=0.155  Sum_probs=55.8

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+. .+  |..+..+++|++|++++|.+++ ..+..+..+++|+++++++|++++..+..+..+++|+.
T Consensus        77 ~~L~~L~Ls~N~l~-~l--~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             TTCCEEECCSSCCS-SC--CCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCEEECCCCcCC-cC--chhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            44555555555554 33  4444555555555555555551 22344555555555555555555433334445555555


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|+++...+..+..+++|++|++++|.++
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            555555555332333444555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=6.1e-17  Score=119.43  Aligned_cols=110  Identities=26%  Similarity=0.290  Sum_probs=101.0

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+.|+.|++++|.+. .+  |..+..+++|++|+|++|.++  .+|..++.+++|++|++++|.++ .+|..++.+++|
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l--~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NI--SANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CC--CGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             cCCCCcEEECCCCCCC-CC--ChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            4478999999999998 66  777889999999999999998  68888999999999999999998 779999999999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      ++|+|++|.++ .+|..++.+++|++|++++|+++|.
T Consensus       296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence            99999999998 8888899999999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=4.3e-16  Score=112.16  Aligned_cols=115  Identities=26%  Similarity=0.175  Sum_probs=99.6

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS   87 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~   87 (126)
                      ...++|++|++++|+++...  +..+..+++|++|++++|.++ ...+..|..+++|++|++++|++++..+..++.+++
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  149 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             hCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence            45579999999999999665  667899999999999999998 244456889999999999999998666667899999


Q ss_pred             CcEEEeecCccCc-cchHHHhcCCCCcEEEccCCcCeec
Q 037844           88 LKVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        88 L~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      |++|++++|.+.+ ..|..++.+++|++|++++|++++.
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            9999999999875 4678889999999999999998763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.1e-16  Score=99.84  Aligned_cols=107  Identities=13%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+. .   ++.+..+++|++|++++|.+.+ ..+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus        66 ~~L~~L~l~~n~~~-~---~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           66 HNIKDLTINNIHAT-N---YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             TTCSEEEEESCCCS-C---CGGGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             CCCCEEEccCCCCC-c---chhhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            44555555555333 1   2234445555555555555541 33444555555555555555555444444555555555


Q ss_pred             EEeecCc-cCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCN-FCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~-~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|. +. .++ .+..+++|+.|++++|.+++
T Consensus       141 L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          141 IDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             EECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             EEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence            5555554 33 333 34555555555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=3.6e-16  Score=103.55  Aligned_cols=62  Identities=26%  Similarity=0.244  Sum_probs=24.8

Q ss_pred             CCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           61 LSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        61 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      +++|+.+++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            33333333333333333333333344444444444444433333344444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=4.1e-16  Score=112.41  Aligned_cols=113  Identities=23%  Similarity=0.170  Sum_probs=77.4

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+.+..  |..+..+++|++|++++|.+.+ ..|..++.+++|+++++++|.+.+..+..++.+++|
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~--~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIE--DKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             CCccCcEEeCCCCcccccC--HHHhhchhhcCEeECCCCcccc-cChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            3456666777766666554  5556666777777777776662 446666677777777777777665544566777777


Q ss_pred             cEEEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++|++++|.+.+ .+|..++.+++|++|++++|.+++
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            777777777764 457778888888888888887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.8e-16  Score=112.52  Aligned_cols=106  Identities=21%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      .++.|++++|.+++ +  |. +..+++|+.|++++|.++  .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|
T Consensus       442 ~L~~L~Ls~n~l~~-l--p~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-L--CH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSS-C--CC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCC-C--cC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence            58899999999985 6  65 899999999999999998  688899999999999999999985 56 78999999999


Q ss_pred             EeecCccCccc-hHHHhcCCCCcEEEccCCcCeec
Q 037844           92 AIIKCNFCSRI-TFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        92 ~l~~n~~~~~~-p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      ++++|.+++.. |..++.+++|+.|++++|++++.
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            99999999765 89999999999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=6.9e-16  Score=102.20  Aligned_cols=108  Identities=23%  Similarity=0.099  Sum_probs=43.5

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCc-ccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNK-FSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++|++++|.+.+..  +..+..+++|++|++++|. +. ...+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus        57 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  133 (285)
T 1ozn_A           57 NLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY  133 (285)
T ss_dssp             TCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence            4444444444444333  3334444444444444443 32 122333334444444444444444333333344444444


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      |++++|.+.+..+..+..+++|++|++++|.+
T Consensus       134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A          134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            44444444422222333344444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.67  E-value=2.6e-16  Score=109.99  Aligned_cols=111  Identities=22%  Similarity=0.095  Sum_probs=101.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+..  |..+..+++|++|++++|.+. ...+..+..+++|+.+++++|.+++..+..+..+++|+.
T Consensus       275 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             SCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             cCceEEEecCccccccc--hhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            57999999999999877  778899999999999999998 356778889999999999999998777888899999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+++..|..+..+++|++|++++|++++
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCcccccChhhccccccccEEECCCCcccc
Confidence            9999999998888899999999999999999876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=4.2e-16  Score=106.61  Aligned_cols=110  Identities=18%  Similarity=0.180  Sum_probs=60.9

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++|++|++++|++....  +..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus        64 ~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccCEEECCCCcCCccC--hhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence            45555666666555433  344555566666666666655 223334555666666666666665544555566666666


Q ss_pred             EEeecCccCccchHH-H---hcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFL-L---RNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~-l---~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+.. +|.. +   ..+++|+.|++++|++++
T Consensus       141 L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          141 LYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             EECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             EECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            6666666663 3332 2   345666666666666553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=3.9e-16  Score=106.77  Aligned_cols=111  Identities=23%  Similarity=0.202  Sum_probs=97.4

Q ss_pred             CceEEEEcCCCCcccccCCCcccc-ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      ..++.|++++|.++...  +..+. .+++|++|++++|.+. ...+..+..+++|++|++++|+++...+..+..+++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            46899999999999665  55566 8999999999999998 34556788999999999999999876666788999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            99999999997778889999999999999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=8.4e-16  Score=101.24  Aligned_cols=63  Identities=29%  Similarity=0.300  Sum_probs=23.5

Q ss_pred             CCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           60 NLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        60 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      .+++|+++++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            333344444444433322222233334444444444444322222333334444444444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=9.8e-16  Score=96.64  Aligned_cols=104  Identities=17%  Similarity=0.131  Sum_probs=92.4

Q ss_pred             EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEe
Q 037844           14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAI   93 (126)
Q Consensus        14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l   93 (126)
                      +.++++++.++ .+  |..+.  +.+++|++++|.++  .+|..+..+++|+.+++++|.+++..+..|..++.|+.|++
T Consensus        13 ~~l~~~~~~l~-~i--p~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLK-VL--PKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCS-SC--CSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCC-cC--CCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            57899999988 56  65543  58999999999998  57888999999999999999999777778999999999999


Q ss_pred             ecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           94 IKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        94 ~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++|.+++..+..+..+++|++|++++|.+++
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence            9999997777789999999999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=6e-16  Score=97.45  Aligned_cols=106  Identities=20%  Similarity=0.114  Sum_probs=92.2

Q ss_pred             EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844           14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA   92 (126)
Q Consensus        14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~   92 (126)
                      ++++++++.++ .+  |..+..  .+++|++++|.+.+ ..+. .+..+++|+++++++|.+++..|..+..++.|+.|+
T Consensus        11 ~~l~~s~~~l~-~i--p~~~~~--~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLK-EI--PRDIPL--HTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCS-SC--CSCCCT--TCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcC-cC--ccCCCC--CCCEEECCCCcCCc-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            68999999997 66  665543  89999999999983 3332 388999999999999999988888999999999999


Q ss_pred             eecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +++|.+++..+..+..+++|++|++++|.+++.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence            999999987777789999999999999999874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.66  E-value=1.2e-16  Score=116.27  Aligned_cols=114  Identities=15%  Similarity=0.159  Sum_probs=101.3

Q ss_pred             CCCceEEEEcCCCCcccc-----------------cCCCcccc--ccccCceeEeccCcccCcchhhhhhCCCCCCEEEc
Q 037844            9 QRNHVIKLDLPSSCLQDS-----------------INSSSGLF--KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNL   69 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~-----------------~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l   69 (126)
                      ..+++++|++++|.+++.                 +  |..+.  .+++|++|++++|.+.+ .+|..++.+++|+++++
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i--p~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK--TEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT--TSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEEC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccC--chhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEEC
Confidence            457899999999999974                 7  88888  99999999999999885 78888999999999999


Q ss_pred             ccCc-CcC-cCCccccCC------CCCcEEEeecCccCccchH--HHhcCCCCcEEEccCCcCeecC
Q 037844           70 FYSS-LSG-GLPVSTKYL------RSLKVLAIIKCNFCSRITF--LLRNLTQLIILHLSQNSFRGRI  126 (126)
Q Consensus        70 ~~~~-~~~-~~~~~~~~l------~~L~~l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~i~~~~  126 (126)
                      ++|+ +++ .+|..++.+      ++|+.|++++|.++ .+|.  .++.+++|++|++++|.++|.+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence            9998 887 788877776      89999999999999 8888  8999999999999999998764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=1.3e-15  Score=100.29  Aligned_cols=110  Identities=23%  Similarity=0.108  Sum_probs=50.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++|++|++++|.++...  +..+..+++|++|++++|.+.+ ..+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus        61 ~~L~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLP--AGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY  137 (270)
T ss_dssp             TTCCEEECCSSCCSCCC--TTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCeeC--hhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence            34444444444444221  2223334444444444444441 22223344445555555555544333334445555555


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            555555555333333455555666666555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=6.5e-16  Score=110.43  Aligned_cols=115  Identities=22%  Similarity=0.197  Sum_probs=97.9

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+.+..  +..+..+++|++|++++|.+.+..+|..+..+++|+.+++++|.+++..|..+..+++|
T Consensus       419 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCCCCCEEeCcCCcccccc--hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            4468888999998888766  67788889999999999988632577778889999999999999987778888899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +.|++++|.+++..+..+..+++|+.+++++|++++.
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            9999999999977777788899999999999998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.65  E-value=5.1e-16  Score=111.92  Aligned_cols=112  Identities=19%  Similarity=0.120  Sum_probs=69.6

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+.+..  |..+..+++|++|++++|.+.+...|..+..+++|+.+++++|.+++..|..+..+++|+
T Consensus       423 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             CTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccCCEEECcCCCCCccc--hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence            355666666666666555  555666666666666666665212455556666666666666666655555566666666


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .|++++|++++..|..+..+++|+.|++++|+++
T Consensus       501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            6666666666555666666666666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.65  E-value=5.6e-16  Score=103.52  Aligned_cols=113  Identities=21%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             CCCceEEEEcCCCCccc-ccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844            9 QRNHVIKLDLPSSCLQD-SINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS   87 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~   87 (126)
                      ..+++++|++++|.+.+ ..  |..+..+++|++|++++|.+. ...|..+..+++|+.+++++|.+++..+..+..+++
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             cCcCCCEEECCCCccccccc--hhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            34789999999999986 46  778899999999999999998 355778889999999999999998766667889999


Q ss_pred             CcEEEeecCccCccchHHHhcCC-CCcEEEccCCcCee
Q 037844           88 LKVLAIIKCNFCSRITFLLRNLT-QLIILHLSQNSFRG  124 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~~l~~~~-~L~~l~l~~n~i~~  124 (126)
                      |+.|++++|.+.+..|..+..++ +|+++++++|++++
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            99999999999988888888885 89999999999876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.64  E-value=9.4e-16  Score=101.14  Aligned_cols=111  Identities=23%  Similarity=0.125  Sum_probs=97.5

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+++..  +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus        28 ~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEEC--TTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccC--HhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence            46999999999999665  568889999999999999998 345557889999999999999998777788999999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            9999999996655578899999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=1.4e-15  Score=109.99  Aligned_cols=112  Identities=19%  Similarity=0.043  Sum_probs=90.2

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++|++|++++|.+.+..  +..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+..+..+++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            367888888888888665  5678888889999999988873 5556678888899999998888754444467888899


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            99999998887777778888889999998888765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=1.9e-15  Score=103.97  Aligned_cols=112  Identities=19%  Similarity=0.043  Sum_probs=82.5

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+....  +..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|.++...+..+..+++|+
T Consensus        68 l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            367788888888877554  5577778888888888888773 4455677788888888888887743333357788888


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            88888888876666667777888888888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.64  E-value=9.4e-16  Score=110.52  Aligned_cols=111  Identities=22%  Similarity=0.117  Sum_probs=80.5

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+++..  |..+..+++|++|++++|.+. ...|..+..+++|+++++++|.+.+..|..++.+++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TTCCEEECTTCCCSEEC--TTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CcCcEEEccCCccCcCC--hhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            46778888888877665  667777788888888888776 355666777778888888877777666667777777777


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+++..+..++.+++|++|++++|.+++
T Consensus       110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred             eeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence            7777777775445556667777777777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.63  E-value=2.5e-15  Score=100.16  Aligned_cols=111  Identities=18%  Similarity=0.033  Sum_probs=96.2

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|+++...  +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|++++..+..+..+++|
T Consensus        98 ~l~~L~~L~l~~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G           98 TLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             TCTTCCEEECCSSCCCCCC--SSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             cCCCCCEEECCCCcCcccC--HHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence            4578999999999999655  5778999999999999999983 445556789999999999999985555556889999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.|++++|+++ .+|..+....+|+.+++++|++.
T Consensus       175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            99999999999 78888888899999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=114.34  Aligned_cols=92  Identities=23%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc--ccCCCCCcEEEeecCccCccch-HHHhc
Q 037844           32 GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS--TKYLRSLKVLAIIKCNFCSRIT-FLLRN  108 (126)
Q Consensus        32 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~~p-~~l~~  108 (126)
                      .+..+++|++|++++|.+. ...|..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+ ..++.
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             HhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            3444444444444444444 133444445555555555555554333332  4455555555555555553322 34555


Q ss_pred             CCCCcEEEccCCcCee
Q 037844          109 LTQLIILHLSQNSFRG  124 (126)
Q Consensus       109 ~~~L~~l~l~~n~i~~  124 (126)
                      +++|++|++++|.+++
T Consensus       147 L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          147 LNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CSSCCEEEEESSCCCC
T ss_pred             CCCCCEEECCCCcCCe
Confidence            5566666666655543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=106.45  Aligned_cols=111  Identities=21%  Similarity=0.083  Sum_probs=71.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++.|++++|.+.+..  +..+..+++|++|++++|.++ ...|..+..+++|++|++++|.++...+..+..+++|+.
T Consensus        32 ~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCCcEEECCCCccceEC--HhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            45677777777776554  556666777777777777766 244566666777777777777666443344566666666


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  142 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY  142 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccce
Confidence            6666666665555556666666666666665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=8.8e-16  Score=103.09  Aligned_cols=110  Identities=14%  Similarity=0.053  Sum_probs=78.5

Q ss_pred             CCceEEEEcCCCCcccccCCCccc--cccccCceeEeccCcccCcchhhhhhCC-----CCCCEEEcccCcCcCcCCccc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGL--FKLIHLKWLILLFNKFSGFEILIKIINL-----SRLSYLNLFYSSLSGGLPVST   82 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~   82 (126)
                      .+++++|++++|.+.+..  |..+  ..+++|++|++++|.+++ . |..+..+     ++|+++++++|.+.+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTA--PPPLLEATGPDLNILNLRNVSWAT-R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCC--CCCSSSCCSCCCSEEEEESCBCSS-S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             cCCccEEEccCCcccchh--HHHHHHhcCCCccEEEccCCCCcc-h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            467888888888888766  5555  677888888888888873 3 5555554     778888888888876666777


Q ss_pred             cCCCCCcEEEeecCccCcc--chHHH--hcCCCCcEEEccCCcCe
Q 037844           83 KYLRSLKVLAIIKCNFCSR--ITFLL--RNLTQLIILHLSQNSFR  123 (126)
Q Consensus        83 ~~l~~L~~l~l~~n~~~~~--~p~~l--~~~~~L~~l~l~~n~i~  123 (126)
                      +.+++|++|++++|++.+.  .+..+  ..+++|++|++++|.++
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            7777888888887776644  23333  56667777777777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.62  E-value=4.2e-15  Score=106.27  Aligned_cols=112  Identities=27%  Similarity=0.196  Sum_probs=72.8

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+.+..  +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+++..+..++.+++|+
T Consensus        51 l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  127 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (570)
T ss_dssp             CSSCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred             CCCceEEECCCCcCCccC--cccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence            355666666666665443  445566666666666666665 23345566666666666666666543333466777777


Q ss_pred             EEEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +|++++|.+.+ .+|..+.++++|++|++++|.+++
T Consensus       128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             EEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            88887777775 457778888888888888887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=2.2e-15  Score=105.98  Aligned_cols=112  Identities=20%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++|++|++++|.+.+..  |..+..+++|++|++++|.+.+ ..+..+..+++|+++++++|.+.+..+..+..+++|
T Consensus        54 ~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            3456777777777666555  5566666667777777666652 222334556666666666666655444455555555


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            55555555555444444444455555555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=2.5e-15  Score=93.33  Aligned_cols=105  Identities=17%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccc-cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLI-HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++++|++++|.+. .+  +. +..+. +|++|++++|.++  .+ ..+..+++|+++++++|.+++..+..+..+++|+
T Consensus        19 ~~L~~L~l~~n~l~-~i--~~-~~~~~~~L~~L~Ls~N~l~--~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VI--EN-LGATLDQFDAIDFSDNEIR--KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TSCEEEECTTSCCC-SC--CC-GGGGTTCCSEEECCSSCCC--EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCceEEEeeCCCCc-hh--HH-hhhcCCCCCEEECCCCCCC--cc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            45667777777666 33  32 33333 6666676666665  22 4455666666666666666543223335666666


Q ss_pred             EEEeecCccCccchH--HHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRITF--LLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~i~  123 (126)
                      .|++++|.+. .+|.  .+..+++|+.+++++|+++
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            6666666665 4444  5566666666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=1.1e-15  Score=109.09  Aligned_cols=111  Identities=27%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcC-cCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSG-GLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~   89 (126)
                      +++++|++++|.+.+..  |..+..+++|++|++++|.+.+ ..+..++.+++|+++++++|.+++ ..|..++.+++|+
T Consensus        50 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           50 ANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CcccEEECCCCCcCccC--hhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            34444444444444333  3344444555555555555442 233334455555555555555443 2233445555555


Q ss_pred             EEEeecCccCccch-HHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRIT-FLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p-~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|...+.+| ..+..+++|++|++++|.+++
T Consensus       127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             EEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            55555555322333 345555555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=3.9e-15  Score=91.65  Aligned_cols=111  Identities=26%  Similarity=0.173  Sum_probs=93.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLRS   87 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~   87 (126)
                      ..+++++|++++|.+.+.    ..+..+++|++|++++|.+.+ .+|..+..+++|+++++++|.+++.. +..+..++.
T Consensus        47 ~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  121 (168)
T 2ell_A           47 EFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC  121 (168)
T ss_dssp             GGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred             hCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence            457899999999998843    467889999999999999983 47777777999999999999998532 267889999


Q ss_pred             CcEEEeecCccCccch---HHHhcCCCCcEEEccCCcCee
Q 037844           88 LKVLAIIKCNFCSRIT---FLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p---~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |+.|++++|++++..+   ..+..+++|++|+++.|.+..
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999999995544   478899999999999997753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=1.6e-15  Score=107.72  Aligned_cols=108  Identities=21%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+..  |..+..+++|++|++++|.++ ...|..+..+++|+++++++|.++ .+|..  .+++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSCCCCCC--HHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred             ccccEEECCCCcccccC--hhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence            68899999999888655  567888899999999999987 355778888999999999999887 45554  7888999


Q ss_pred             EEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+++ .+|..++.+++|++|++++|.+++
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            9999999886 467888889999999999888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.60  E-value=5.7e-15  Score=106.44  Aligned_cols=113  Identities=15%  Similarity=0.030  Sum_probs=72.8

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+....  |..+..+++|++|++++|.+. ...|..+..+++|+++++++|.+++..+..+..+++|
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIH--EDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             cCccceEEECCCCccceeC--hhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence            4467777777777777665  666777777777777777776 2455666677777777777777765445556666666


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++|++++|.+.+..++.+..+++|++|++++|.+++
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            666666666664222233335666666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=4.4e-15  Score=89.72  Aligned_cols=107  Identities=24%  Similarity=0.181  Sum_probs=90.6

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCc-CCccccCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGG-LPVSTKYLR   86 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~   86 (126)
                      ...+++++|++++|.+.+.    ..+..+++|++|++++|.+++ .+|..+..+++|+++++++|.+++. .+..+..++
T Consensus        39 ~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~  113 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE  113 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred             hhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence            3457899999999998843    467889999999999999983 4788777899999999999999863 347788999


Q ss_pred             CCcEEEeecCccCccch---HHHhcCCCCcEEEccC
Q 037844           87 SLKVLAIIKCNFCSRIT---FLLRNLTQLIILHLSQ  119 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~~p---~~l~~~~~L~~l~l~~  119 (126)
                      +|+.+++++|.+++..+   ..+..+++|+++++++
T Consensus       114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999999996554   4788999999999863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=5.8e-15  Score=105.26  Aligned_cols=110  Identities=24%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+++..  |..+..+++|++|++++|.+. ...|..+..+++|+++++++|.+++..+..++.+++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEEC--SSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccC--hhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence            58999999999999776  778999999999999999998 356678899999999999999998766666899999999


Q ss_pred             EEeecCccCc-cchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|.+.+ ..|..++.+++|++|++++|.+.
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  136 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF  136 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccc
Confidence            9999999986 45677889999999999999743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=3.8e-15  Score=108.69  Aligned_cols=110  Identities=21%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+..  +..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|.+++..+..+..+++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSCCCCCC--GGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCCCCCCCcC--HHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence            34555555555555333  3345555555555555555542 33444445555555555555544322223444445555


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|.+.+..|..++.+++|++|++++|.++
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  134 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS  134 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCccc
Confidence            555555444333334444444444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=5e-15  Score=106.20  Aligned_cols=108  Identities=22%  Similarity=0.230  Sum_probs=89.5

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+..  +..+..+++|++|++++|.++ ...|..+..+++|+++++++|.++ .+|..  .+++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSCCCCCC--GGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred             CCcCEEECCCCCccccC--hhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence            67899999999988655  567888999999999999987 355777888999999999999987 55655  7889999


Q ss_pred             EEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|.+.+ ..|..++.+++|++|++++|.+++
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            9999999885 345788889999999999988764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=5.6e-15  Score=107.80  Aligned_cols=114  Identities=20%  Similarity=0.075  Sum_probs=100.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+.+..  |..+..+++|++|++++|.+++ ..+..++.+++|+++++++|.+.+..+..++.+++|
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCC--TTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             CCCcCcEEECCCCccCccC--HHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            4478999999999999777  7788999999999999999982 333468899999999999999987666789999999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      ++|++++|.+.+..|..++.+++|++|++++|.+++.
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            9999999999988888888999999999999998763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=9.8e-15  Score=99.33  Aligned_cols=111  Identities=21%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCC-ccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLP-VSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~   89 (126)
                      +++++|++++|.+++..  +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++... ..+..+++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           76 VNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CCCCEEECCCCccCccC--HhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            45555555555555433  3445555555555555555541 222224555556666665555542211 2345555555


Q ss_pred             EEEeecCc-cCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCN-FCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~-~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|. +....+..+..+++|+.+++++|.+++
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            55555552 343333445555555555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=9.4e-15  Score=103.53  Aligned_cols=109  Identities=13%  Similarity=0.068  Sum_probs=69.8

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhh-CCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKII-NLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .++++.|++++|.+++..  |..+..+++|++|++++|.+++ ..|..+. .+++|+.|++++|.+++. + ....+++|
T Consensus       119 l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L  193 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKL  193 (487)
T ss_dssp             CSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTC
T ss_pred             cCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCccccc-c-ccccCCCC
Confidence            356777777777777665  5566677777777777777763 4455554 567777777777776643 2 23346666


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.+++ +|+.+..+++|+.|++++|.+++
T Consensus       194 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence            667776666663 33345666666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.58  E-value=8.5e-15  Score=102.64  Aligned_cols=106  Identities=22%  Similarity=0.162  Sum_probs=78.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+....  +..+..+++|++|++++|.+. ...+..+..+++|++|++++|.++...+..+..+++|+.
T Consensus        75 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            57888888888888766  677888888888888888887 355567778888888888888887555556777888888


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccC
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQ  119 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~  119 (126)
                      |++++|.+....+..+..+++|+.|++++
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence            88888887744443455555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=102.41  Aligned_cols=113  Identities=21%  Similarity=0.269  Sum_probs=79.8

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCcc-ccCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVS-TKYL   85 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~l   85 (126)
                      ...+++++|++++|.+.+..  |..+..+++|++|++++|.+.+. .+|..+..+++|+++++++|.+.+.+|.. +..+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT  398 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTT--TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred             hhCCcccEEEeECCccChhh--hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence            45578899999999988767  77888889999999999988720 34566788888999999988887645543 4444


Q ss_pred             CC----------------------CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           86 RS----------------------LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        86 ~~----------------------L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.                      |+.|++++|.++ .+|..+..+++|+++++++|+++
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence            44                      445555555554 45555556667777777776665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.58  E-value=1.5e-14  Score=97.60  Aligned_cols=86  Identities=20%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844           37 IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH  116 (126)
Q Consensus        37 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~  116 (126)
                      ++|++|++++|.+. ...+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++++
T Consensus       192 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          192 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence            45555555566555 233455666667777777777666555555666667777777777666 5666666666777777


Q ss_pred             ccCCcCee
Q 037844          117 LSQNSFRG  124 (126)
Q Consensus       117 l~~n~i~~  124 (126)
                      +++|++++
T Consensus       270 l~~N~i~~  277 (330)
T 1xku_A          270 LHNNNISA  277 (330)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCcCCc
Confidence            77776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=6.1e-15  Score=91.54  Aligned_cols=105  Identities=21%  Similarity=0.238  Sum_probs=89.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcCCc--cccCCCC
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGLPV--STKYLRS   87 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~--~~~~l~~   87 (126)
                      ++++.|++++|.+++ +   ..+..+++|++|++++|.++  .+|+ .+..+++|+++++++|.++ ..|.  .+..+++
T Consensus        42 ~~L~~L~Ls~N~l~~-~---~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~  114 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRK-L---DGFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS  114 (176)
T ss_dssp             TCCSEEECCSSCCCE-E---CCCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred             CCCCEEECCCCCCCc-c---cccccCCCCCEEECCCCccc--ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCC
Confidence            489999999999985 3   36788999999999999998  3454 4488999999999999996 4555  6888999


Q ss_pred             CcEEEeecCccCccchHH----HhcCCCCcEEEccCCcCe
Q 037844           88 LKVLAIIKCNFCSRITFL----LRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~~----l~~~~~L~~l~l~~n~i~  123 (126)
                      |+.+++++|++. .+|..    +..+++|+++|++.|.+.
T Consensus       115 L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          115 LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999998 55664    889999999999988653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.57  E-value=3.5e-14  Score=94.59  Aligned_cols=102  Identities=28%  Similarity=0.288  Sum_probs=49.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+..   . +..+++|++|++++|.+.  .++ .+..+++|+++++++|.+++.  +.+..++.|+.
T Consensus        68 ~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~--~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~  138 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES  138 (291)
T ss_dssp             TTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred             CCCCEEEccCCccCCCc---c-cccCCCCCEEECCCCcCC--CCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence            55666666666655332   2 455555566665555554  122 244555555555555555421  23444444444


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|.+++.  ..+..+++|+.|++++|.++
T Consensus       139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             EEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            44444444422  23344444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=100.62  Aligned_cols=106  Identities=23%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++.|++++|.+....  +..+..+++|++|++++|.+. ...+..+..+++|++|++++|.++...+..+..+++|+.
T Consensus        64 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCCCEEC--TTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcCCeeC--HHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence            56788888888888665  677788888888888888887 345566778888888888888887555556777888888


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccC
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQ  119 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~  119 (126)
                      |++++|.+....+..+..+++|+.|++++
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            88888877754444555556666666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=2.9e-15  Score=112.27  Aligned_cols=111  Identities=16%  Similarity=0.117  Sum_probs=89.3

Q ss_pred             CCCceEEEEcCCCCccc-----------------ccCCCcccc--ccccCceeEeccCcccCcchhhhhhCCCCCCEEEc
Q 037844            9 QRNHVIKLDLPSSCLQD-----------------SINSSSGLF--KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNL   69 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~-----------------~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l   69 (126)
                      ..++|++|++++|.+++                 .+  |..+.  .+++|++|++++|.+.+ .+|..+..+++|+.|++
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i--P~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE--NEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT--TSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEEC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccC--ChhhhhccCCCCCEEECcCCCCCc-cChHHHhCCCCCCEEEC
Confidence            44678889999998887                 26  77776  88889999999888774 67888888888999999


Q ss_pred             ccCc-CcC-cCCccccCCC-------CCcEEEeecCccCccchH--HHhcCCCCcEEEccCCcCe
Q 037844           70 FYSS-LSG-GLPVSTKYLR-------SLKVLAIIKCNFCSRITF--LLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        70 ~~~~-~~~-~~~~~~~~l~-------~L~~l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~i~  123 (126)
                      ++|+ +++ .+|..++.++       +|+.|++++|.+. .+|.  .+..+++|+.|++++|.++
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence            8887 776 6676555544       8888888888888 7787  7888888888888888776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.57  E-value=2.1e-14  Score=107.33  Aligned_cols=114  Identities=25%  Similarity=0.121  Sum_probs=90.3

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.++...  +..+..+++|++|++++|...+...|..+..+++|++|++++|.+.+..|..+..+++|
T Consensus        22 lp~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             SCTTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CCCCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            3467888888888888766  67788888888888888855432236678888888888888888887778888888888


Q ss_pred             cEEEeecCccCccchHH--HhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFL--LRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~--l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++|++++|.+.+..|..  +..+++|++|++++|.+++
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS  137 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc
Confidence            88888888888766654  7788888888888888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=100.97  Aligned_cols=109  Identities=24%  Similarity=0.152  Sum_probs=72.2

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++|++|++++|.++ .+  | .+..+++|++|++++|.++ ...+..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus       184 l~~L~~L~L~~n~l~-~~--~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          184 LSNLRYLNLAMCNLR-EI--P-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             CSSCCEEECTTSCCS-SC--C-CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             ccccCeecCCCCcCc-cc--c-ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            355666666666666 33  3 3556666777777777766 24456666677777777777777666666667777777


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .|++++|++++..+..+..+++|+.+++++|++.
T Consensus       259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            7777777777555555666777777777777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=1.4e-14  Score=93.73  Aligned_cols=85  Identities=19%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCc-ccCcchhhhhhCCCCCCEEEccc-CcCcCcCCccccCCCCCc
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNK-FSGFEILIKIINLSRLSYLNLFY-SSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~   89 (126)
                      ++++|++++|+++...  +..+..+++|++|++++|. ++ ...+..+..+++|+++++++ |.+++..+..+..+++|+
T Consensus        32 ~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             cccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            4555666666555333  3345555556666666554 44 12223445555555555555 555533334445555555


Q ss_pred             EEEeecCccC
Q 037844           90 VLAIIKCNFC   99 (126)
Q Consensus        90 ~l~l~~n~~~   99 (126)
                      .|++++|.++
T Consensus       109 ~L~l~~n~l~  118 (239)
T 2xwt_C          109 FLGIFNTGLK  118 (239)
T ss_dssp             EEEEEEECCC
T ss_pred             EEeCCCCCCc
Confidence            5555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=3.6e-14  Score=93.35  Aligned_cols=102  Identities=27%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|++.+.   ++ +..+++|++|++++|.++  .++. +.. ++|+.+++++|.+++.  +.+..+++|+.
T Consensus        63 ~~L~~L~L~~N~i~~~---~~-l~~l~~L~~L~L~~N~l~--~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~  132 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL---SP-LKDLTKLEELSVNRNRLK--NLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEI  132 (263)
T ss_dssp             TTCCEEECCSSCCCCC---GG-GTTCSSCCEEECCSSCCS--CCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCE
T ss_pred             CCCCEEECCCCccCCC---hh-hccCCCCCEEECCCCccC--CcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccE
Confidence            4455555555555432   22 444555555555555554  1222 111 4444555555544421  23555666666


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|++++ ++ .+..+++|+.|++++|.+++
T Consensus       133 L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          133 LSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             EECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             EECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence            6666666653 23 45556666666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=99.25  Aligned_cols=109  Identities=27%  Similarity=0.258  Sum_probs=91.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+++..  +..+..+++|++|++++|.++ ...+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            58999999999998654  557889999999999999998 355667889999999999999998544444788999999


Q ss_pred             EEeecCccCccchH--HHhcCCCCcEEEccCCc-Ce
Q 037844           91 LAIIKCNFCSRITF--LLRNLTQLIILHLSQNS-FR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~-i~  123 (126)
                      |++++|++. .+|.  .+..+++|++|++++|. ++
T Consensus       129 L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A          129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             EECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc
Confidence            999999998 4554  68889999999999984 44

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.56  E-value=3.7e-14  Score=95.75  Aligned_cols=107  Identities=21%  Similarity=0.168  Sum_probs=90.7

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+....  +..+..+++|++|++++|.++ ...|..+..+++|+++++++|.++ .+|..+.  ++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVE  127 (332)
T ss_dssp             TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCE
T ss_pred             CCCeEEECCCCcCCccC--HhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCE
Confidence            57899999999998665  667889999999999999998 355788899999999999999987 5565544  78999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            999999998665667888999999999999885

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=4.4e-14  Score=87.63  Aligned_cols=106  Identities=22%  Similarity=0.142  Sum_probs=88.5

Q ss_pred             eEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844           13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA   92 (126)
Q Consensus        13 l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~   92 (126)
                      .+.++++++.+. .+  |..+  .+++++|++++|.+.+ ..+..+..+++|+++++++|.+++..+..+..+++|+.|+
T Consensus         9 ~~~l~~~~~~l~-~~--p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SV--PTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTEEECCSSCCS-SC--CTTC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCCc-cC--CCCC--CCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            367899999888 45  5443  3689999999999983 4455578899999999999999866556678999999999


Q ss_pred             eecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +++|.+++..+..+..+++|++|++++|.+++
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence            99999996666678899999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.56  E-value=6.2e-14  Score=94.05  Aligned_cols=84  Identities=27%  Similarity=0.314  Sum_probs=36.8

Q ss_pred             ccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCC
Q 037844           33 LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQL  112 (126)
Q Consensus        33 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L  112 (126)
                      +..+++|++|++++|.+.+  ++. +..+++|+.+++++|.+++. +. +..+++|+.|++++|.+.+ ++. +..+++|
T Consensus       125 l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L  197 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNL  197 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTC
T ss_pred             hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCC
Confidence            3444444444444444431  222 44444444555544444421 11 4444445555555554442 221 4444455


Q ss_pred             cEEEccCCcCe
Q 037844          113 IILHLSQNSFR  123 (126)
Q Consensus       113 ~~l~l~~n~i~  123 (126)
                      ++|++++|.++
T Consensus       198 ~~L~L~~N~l~  208 (308)
T 1h6u_A          198 IEVHLKNNQIS  208 (308)
T ss_dssp             CEEECTTSCCC
T ss_pred             CEEEccCCccC
Confidence            55555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.55  E-value=7.4e-14  Score=93.03  Aligned_cols=105  Identities=27%  Similarity=0.251  Sum_probs=64.2

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+.+ .   +.+..+++|++|++++|.+.+  + +.+..+++|+.+++++|.+++.  ..+..+++|
T Consensus        88 ~l~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  158 (291)
T 1h6t_A           88 NLKNLGWLFLDENKVKD-L---SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL  158 (291)
T ss_dssp             TCTTCCEEECCSSCCCC-G---GGGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             cCCCCCEEECCCCcCCC-C---hhhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence            34567777777777663 3   235666777777777777652  2 3455666677777766666533  445666666


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       159 ~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            666666666663322  5566666666666666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.55  E-value=7.6e-14  Score=94.51  Aligned_cols=107  Identities=25%  Similarity=0.288  Sum_probs=78.0

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+.+.   +. +..+++|++|++++|.+.+  + +.+..+++|+.+++++|.+++.  +.+..+++|
T Consensus       219 ~~~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L  289 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDL---SP-LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL  289 (347)
T ss_dssp             GCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             cCCcCCEEEccCCccCCC---cc-hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence            346777888888877743   22 6677778888888887762  3 3466777888888888877643  446777888


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.+.+..+..+..+++|+++++++|++++
T Consensus       290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            888888888877777777788888888888887765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.55  E-value=6.5e-14  Score=94.43  Aligned_cols=107  Identities=23%  Similarity=0.278  Sum_probs=80.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +.+++|++++|.+++..  +..+..+++|++|++++|.+++ ..|..+..+++|+++++++|.++ .+|..+.  +.|+.
T Consensus        52 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQE  125 (330)
T ss_dssp             TTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCE
T ss_pred             CCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccE
Confidence            57888999999888655  5578888999999999999873 55778888899999999998886 4454433  56777


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            777777777555556666677777777766654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=3.4e-14  Score=99.59  Aligned_cols=112  Identities=19%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++|++|++++|.+.+..  +..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+..+++|
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  173 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL  173 (452)
T ss_dssp             TCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence            4467888888888888665  667778888888888888887 2334446778888888888887764444445555666


Q ss_pred             cEEEeecCccCccchH-HHhcCCCCcEEEccCCcCe
Q 037844           89 KVLAIIKCNFCSRITF-LLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~-~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.|++++|...+.++. .+..+++|++|++++|.++
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            6666655332222222 3444445555555444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.54  E-value=1.5e-14  Score=99.52  Aligned_cols=113  Identities=14%  Similarity=0.064  Sum_probs=95.2

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++++.|++++|.+....  +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+++..|..+..++.|+
T Consensus        44 l~~l~~l~l~~~~l~~l~--~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEESCEESEEC--THHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCceEEEecCCchhhCC--hhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            378899999999988432  344678999999999999998 34556789999999999999999977777889999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +|++++|.+....+..+..+++|++|++++|.+++.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  156 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  156 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence            999999999944334468899999999999998753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=4.2e-14  Score=95.08  Aligned_cols=106  Identities=19%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             CceEEEEcCCCCcccccCCCccc-cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGL-FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      +++++|++++|.+.+..  +..+ ..+++|++|++++|.++  .++. ...+++|+.+++++|.+++ .|..+..+++|+
T Consensus       144 ~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~--~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~  217 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY--DVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT  217 (317)
T ss_dssp             SSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCC--EEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred             CCCCEEECCCCCCCccc--HHHHhhccCcCCEEECCCCcCc--cccc-ccccccCCEEECCCCcCCc-chhhhcccCccc
Confidence            34444444444444332  2222 23444455555554444  1222 2234555555555555542 333355555666


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .|++++|.++ .+|..+..+++|+.+++++|+++
T Consensus       218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             EEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            6666666655 44555555566666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=4.2e-14  Score=95.96  Aligned_cols=104  Identities=21%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             EEEEcCCC-CcccccCCCccccccccCceeEecc-CcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           14 IKLDLPSS-CLQDSINSSSGLFKLIHLKWLILLF-NKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        14 ~~L~ls~n-~l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      ..++.+++ .++ .+  |. +..+.+|++|+|++ |.+. ...+..+..+++|+.|++++|++++..|..|..+++|+.|
T Consensus        11 ~~v~~~~~n~l~-~i--p~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALD-SL--HH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCT-TT--TT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCCCC-cc--CC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            35688887 888 56  77 88999999999996 9998 3455678899999999999999998878888999999999


Q ss_pred             EeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +|++|++++..+..+..++ |+.|++.+|++.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999999954444455444 999999999886

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.54  E-value=4e-14  Score=95.86  Aligned_cols=107  Identities=21%  Similarity=0.194  Sum_probs=91.1

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS   87 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~   87 (126)
                      ...+++++|++++|.+.. .   +.+..+++|++|++++|.+.+  + +.+..+++|+.+++++|.+.+..+..+..+++
T Consensus       240 ~~l~~L~~L~l~~n~l~~-~---~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISD-I---NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             TTCTTCCEEECCSSCCCC-C---GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             hcCCCCCEEECCCCccCC-C---hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence            455789999999999884 3   457889999999999999983  4 45788999999999999998777788899999


Q ss_pred             CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           88 LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      |+.+++++|++++..|  +..+++|+.+++++|.|+
T Consensus       313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999996555  888999999999999986

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.54  E-value=9.3e-15  Score=98.08  Aligned_cols=111  Identities=23%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             CCceEEEEcCCCCcccccCCCcccccc-----ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCc--CCccc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKL-----IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGG--LPVST   82 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~   82 (126)
                      .+++++|++++|.+.+.   |..+..+     ++|++|++++|.+.+ ..+..+..+++|+++++++|++.+.  .+..+
T Consensus       120 l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             CCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            35666666666666532   3444444     566666666666652 3345555666666666666654432  12222


Q ss_pred             --cCCCCCcEEEeecCccCc--cch-HHHhcCCCCcEEEccCCcCee
Q 037844           83 --KYLRSLKVLAIIKCNFCS--RIT-FLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        83 --~~l~~L~~l~l~~n~~~~--~~p-~~l~~~~~L~~l~l~~n~i~~  124 (126)
                        ..+++|+.|++++|.+++  .++ ..+..+++|++|++++|.+++
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence              455566666666666552  111 223345556666666665554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.54  E-value=9e-14  Score=93.26  Aligned_cols=101  Identities=23%  Similarity=0.247  Sum_probs=47.0

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|.+.+.   +. +..+++|++|++++|.+.+  ++ .+..+++|+.+++++|.+++. + .+..+++|+.
T Consensus        63 ~~L~~L~L~~n~i~~~---~~-~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~  133 (308)
T 1h6u_A           63 NNLIGLELKDNQITDL---AP-LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQV  133 (308)
T ss_dssp             TTCCEEECCSSCCCCC---GG-GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCE
T ss_pred             CCCCEEEccCCcCCCC---hh-HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCE
Confidence            4555566666555532   22 4555555555555555541  22 344455555555555555421 1 1444444444


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      |++++|.+.+. +. +..+++|++|++++|.+
T Consensus       134 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A          134 LYLDLNQITNI-SP-LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             EECCSSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred             EECCCCccCcC-cc-ccCCCCccEEEccCCcC
Confidence            44444444422 21 33444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=2.8e-14  Score=92.36  Aligned_cols=110  Identities=17%  Similarity=0.221  Sum_probs=83.9

Q ss_pred             CCCceEEEEcCCCC-cccccCCCccccccccCceeEecc-CcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844            9 QRNHVIKLDLPSSC-LQDSINSSSGLFKLIHLKWLILLF-NKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR   86 (126)
Q Consensus         9 ~~~~l~~L~ls~n~-l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~   86 (126)
                      ..+++++|++++|. ++...  +..+..+++|++|++++ |.++ ...+..+..+++|+++++++|.+++ +|. +..++
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~  127 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY  127 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred             CCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence            45788999999996 77444  45778888999999998 8887 2344567788889999999888874 555 77777


Q ss_pred             CCc---EEEeecC-ccCccchHHHhcCCCCc-EEEccCCcCe
Q 037844           87 SLK---VLAIIKC-NFCSRITFLLRNLTQLI-ILHLSQNSFR  123 (126)
Q Consensus        87 ~L~---~l~l~~n-~~~~~~p~~l~~~~~L~-~l~l~~n~i~  123 (126)
                      +|+   .+++++| .+.+..+..+..+++|+ .+++++|.++
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            777   8888888 77755455677788888 8888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.53  E-value=8.2e-14  Score=99.92  Aligned_cols=113  Identities=23%  Similarity=0.280  Sum_probs=80.6

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCcc-ccCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVS-TKYL   85 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~l   85 (126)
                      ...+++++|++++|.+.+..  |..+..+++|++|++++|.+++. ..|..+..+++|+.+++++|.+++..|.. +..+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSV--FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTT--TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccch--hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            45578999999999999777  77888899999999999998721 23456778899999999999888645543 4444


Q ss_pred             CC----------------------CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           86 RS----------------------LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        86 ~~----------------------L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.                      |+.|++++|.++ .+|..+..+++|++|++++|+++
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence            44                      555555555554 45555556667777777777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=7.5e-14  Score=100.61  Aligned_cols=104  Identities=22%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLR   86 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~   86 (126)
                      ...++|+.|++++|.++ .+  |..+..+++|+.|++++|.++  .+| .++.+++|+.|++++|.+++.. |..++.++
T Consensus       460 ~~l~~L~~L~Ls~N~l~-~l--p~~~~~l~~L~~L~Ls~N~l~--~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~  533 (567)
T 1dce_A          460 EQLLLVTHLDLSHNRLR-AL--PPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP  533 (567)
T ss_dssp             GGGTTCCEEECCSSCCC-CC--CGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             cccccCcEeecCccccc-cc--chhhhcCCCCCEEECCCCCCC--CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence            34568999999999999 77  889999999999999999998  366 7999999999999999999776 88999999


Q ss_pred             CCcEEEeecCccCccch---HHHhcCCCCcEEEc
Q 037844           87 SLKVLAIIKCNFCSRIT---FLLRNLTQLIILHL  117 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~~p---~~l~~~~~L~~l~l  117 (126)
                      +|+.|++++|++++..|   ..+..+++|+.|++
T Consensus       534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999986543   23456899999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=2.5e-14  Score=103.41  Aligned_cols=112  Identities=14%  Similarity=0.081  Sum_probs=96.2

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++.+++++|.+....  +..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..|..++.++.|++
T Consensus        51 ~~l~~l~l~~~~l~~lp--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             CCCSEEEESSCEESEEC--THHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCCCCCcC--HHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            57899999999988543  4456789999999999999983 55668899999999999999999877777899999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      |++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  162 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence            99999999955455578999999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.52  E-value=8.1e-14  Score=91.64  Aligned_cols=104  Identities=23%  Similarity=0.259  Sum_probs=88.2

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+. .+  + .+..+++|++|++++|.++  .++. +..+++|+.+++++|++++ ++. +.. +.|
T Consensus        39 ~l~~L~~L~l~~n~i~-~l--~-~l~~l~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L  108 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQ-SL--A-GMQFFTNLKELHLSHNQIS--DLSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACL  108 (263)
T ss_dssp             HHTTCSEEECTTSCCC-CC--T-TGGGCTTCCEEECCSSCCC--CCGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSC
T ss_pred             hcCcCcEEECcCCCcc-cc--h-HHhhCCCCCEEECCCCccC--CChh-hccCCCCCEEECCCCccCC-cCc-ccc-Ccc
Confidence            4478999999999988 55  4 6788999999999999998  3555 8899999999999999985 443 333 899


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.+++ ++ .+..+++|+.|++++|.+++
T Consensus       109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred             cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence            999999999994 44 58899999999999999876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.52  E-value=2.3e-14  Score=96.79  Aligned_cols=85  Identities=24%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEc
Q 037844           38 HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHL  117 (126)
Q Consensus        38 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l  117 (126)
                      +|++|++++|.+.+ ..+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+++++
T Consensus       194 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          194 TLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             SCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred             CCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence            45555566665552 33445666666777777777666555555666667777777777666 56666666667777777


Q ss_pred             cCCcCee
Q 037844          118 SQNSFRG  124 (126)
Q Consensus       118 ~~n~i~~  124 (126)
                      ++|++++
T Consensus       272 ~~N~l~~  278 (332)
T 2ft3_A          272 HTNNITK  278 (332)
T ss_dssp             CSSCCCB
T ss_pred             CCCCCCc
Confidence            7766654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.51  E-value=4e-14  Score=95.18  Aligned_cols=109  Identities=13%  Similarity=0.067  Sum_probs=91.8

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhh-hCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKI-INLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .+++++|++++|.++...  +..+..+++|++|++++|.+.+ ..+..+ ..+++|+++++++|.+++. + ....+++|
T Consensus       119 ~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L  193 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKL  193 (317)
T ss_dssp             CSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTC
T ss_pred             cCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCc-ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccC
Confidence            478999999999999766  6678889999999999999983 445555 4789999999999999754 3 34458999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus       194 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CEEECCCCcCC-cchhhhcccCcccEEECcCCcccc
Confidence            99999999999 556668899999999999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.51  E-value=2.7e-14  Score=95.71  Aligned_cols=110  Identities=17%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             CCceEEEEcCCCCcccc--cCCCccccccccCceeEeccCcccCcchhh----hhhCCCCCCEEEcccCcCcCcCCcccc
Q 037844           10 RNHVIKLDLPSSCLQDS--INSSSGLFKLIHLKWLILLFNKFSGFEILI----KIINLSRLSYLNLFYSSLSGGLPVSTK   83 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~   83 (126)
                      .+++++|++++|++.+.  .+.+..+..+++|++|++++|.++  .++.    .+..+++|+++++++|.+++..|..+.
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~  245 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP  245 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence            34566666666654421  100111234555666666666654  2222    234567777777777777765565555


Q ss_pred             CC---CCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           84 YL---RSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        84 ~l---~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .+   ++|++|++++|.++ .+|..+.  ++|+.|++++|++++
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence            54   57777777777776 5555442  566666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.51  E-value=1.8e-13  Score=99.25  Aligned_cols=62  Identities=24%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             hhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           58 IINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        58 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.++
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            33444444444444444322  233444444444444444443222  444444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.50  E-value=4.8e-14  Score=94.47  Aligned_cols=86  Identities=10%  Similarity=-0.036  Sum_probs=57.6

Q ss_pred             CceEEEEcCCCCcccccCCCccc--cccccCceeEeccCcccCcchh----hhhhCCCCCCEEEcccCcCcCcCCccccC
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGL--FKLIHLKWLILLFNKFSGFEIL----IKIINLSRLSYLNLFYSSLSGGLPVSTKY   84 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~   84 (126)
                      +++++|++++|.+.+..  |..+  ..+++|++|++++|.+.+ ..+    ..+..+++|+++++++|.+.+..+..+..
T Consensus        91 ~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           91 SRLKELTLEDLKITGTM--PPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             SCCCEEEEESCCCBSCC--CCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             CceeEEEeeCCEeccch--hhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            34788888888877666  5555  667777777777777762 222    23345677777777777776555566666


Q ss_pred             CCCCcEEEeecCccC
Q 037844           85 LRSLKVLAIIKCNFC   99 (126)
Q Consensus        85 l~~L~~l~l~~n~~~   99 (126)
                      +++|++|++++|++.
T Consensus       168 l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          168 FPALTSLDLSDNPGL  182 (310)
T ss_dssp             CTTCCEEECCSCTTC
T ss_pred             CCCCCEEECCCCCCc
Confidence            777777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.50  E-value=1.9e-13  Score=99.18  Aligned_cols=106  Identities=27%  Similarity=0.261  Sum_probs=84.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..++|+.|++++|.+.+..   + +..+++|+.|++++|.+.  .++ .+..+++|+.|++++|.+.+.  +.+..+++|
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~---~-l~~l~~L~~L~Ls~N~l~--~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L  133 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIK---P-LTNLKNLGWLFLDENKIK--DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL  133 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCG---G-GGGCTTCCEEECCSSCCC--CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred             cCCCCCEEEeeCCCCCCCh---h-hccCCCCCEEECcCCCCC--CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCcc
Confidence            4578888999988888543   3 778888999999998887  233 577888999999999988742  457888999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +.|++++|.+.+.  ..+..+++|+.|++++|.+++.
T Consensus       134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            9999999988854  5678889999999999988763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=6.9e-14  Score=99.11  Aligned_cols=107  Identities=20%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             CCceEEEEcCCCCcccccCCCcccc-ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .++|+.|++++|.+.+..  |..+. .+++|++|++++|.+++  ++. ...+++|+.+++++|.+++ .|+.+..+++|
T Consensus       143 l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L  216 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV  216 (487)
T ss_dssp             GSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred             CCCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCCCcccc--ccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCc
Confidence            478999999999999877  66665 78999999999999983  443 4468999999999999985 45568899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.|++++|.++ .+|..+..+++|+.+++++|++.
T Consensus       217 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             cEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            99999999999 57888889999999999999987

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.7e-13  Score=84.72  Aligned_cols=89  Identities=17%  Similarity=0.033  Sum_probs=77.1

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+++..  |..+..+++|++|++++|.+++ ..+..+..+++|+++++++|++++..+..+..+++|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence            368999999999999776  7788999999999999999983 4445568899999999999999866666688999999


Q ss_pred             EEEeecCccCcc
Q 037844           90 VLAIIKCNFCSR  101 (126)
Q Consensus        90 ~l~l~~n~~~~~  101 (126)
                      .|++++|++...
T Consensus       106 ~L~L~~N~~~c~  117 (170)
T 3g39_A          106 HIWLLNNPWDCA  117 (170)
T ss_dssp             EEECCSSCBCTT
T ss_pred             EEEeCCCCCCCC
Confidence            999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=3.3e-13  Score=83.76  Aligned_cols=89  Identities=17%  Similarity=0.082  Sum_probs=75.9

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|++.+..  |..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|++++..+..+..+++|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             CTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence            368999999999999776  7788999999999999999983 3334467899999999999999865555588999999


Q ss_pred             EEEeecCccCcc
Q 037844           90 VLAIIKCNFCSR  101 (126)
Q Consensus        90 ~l~l~~n~~~~~  101 (126)
                      .+++++|++...
T Consensus       109 ~L~L~~N~~~c~  120 (174)
T 2r9u_A          109 HIYLYNNPWDCE  120 (174)
T ss_dssp             EEECCSSCBCTT
T ss_pred             EEEeCCCCcccc
Confidence            999999998743

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=6.8e-13  Score=93.30  Aligned_cols=61  Identities=28%  Similarity=0.389  Sum_probs=26.5

Q ss_pred             CCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           60 NLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        60 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .+++|+.+++++|.+++..|  +..+++|+.|++++|++.+.  ..+..+++|+.+++++|++++
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence            33444444444444432221  33444444444444444422  234445555555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=6.8e-13  Score=93.29  Aligned_cols=105  Identities=23%  Similarity=0.293  Sum_probs=87.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|++.+..    .+..+++|++|++++|.+.+ . +. +..+++|+.+++++|.+++.  ..+..+++|
T Consensus       285 ~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~-~-~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  355 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNNISD-I-SP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNI  355 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSC-C-GG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             CCCccCeEEcCCCcccCch----hhcCCCCCCEEECcCCcCCC-c-hh-hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence            4467888888888877543    26788899999999999883 3 33 77899999999999999854  568899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.+++++|++.+..|  +..+++|+.+++++|++++
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            999999999997766  8899999999999998876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.8e-15  Score=95.57  Aligned_cols=107  Identities=22%  Similarity=0.169  Sum_probs=84.6

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+.+ +  | .+..+++|++|++++|.+.  .+|..+..+++|+.+++++|.+++ +| .+..+++|+
T Consensus        47 l~~L~~L~ls~n~l~~-l--~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-I--S-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             TTTCSEEECSEEEESC-C--C-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             CCCCCEEECCCCCCcc-c--c-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence            4678899999988874 6  6 7788888999999999887  467767777889999999888875 33 577788899


Q ss_pred             EEEeecCccCccch-HHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRIT-FLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p-~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|.+.+..+ ..+..+++|+++++++|.+++
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            99999988884222 467888899999999888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.45  E-value=3.1e-14  Score=95.99  Aligned_cols=107  Identities=23%  Similarity=0.210  Sum_probs=45.8

Q ss_pred             CceEEEEcCCCCcccc-cCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC-cCcCc-CCccccCCCC
Q 037844           11 NHVIKLDLPSSCLQDS-INSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS-SLSGG-LPVSTKYLRS   87 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~l~~   87 (126)
                      +++++|++++|.+.+. .  +..+..+++|++|++++|.+. ...+..++.+++|+++++++| .+++. ++..+..+++
T Consensus        93 ~~L~~L~L~~~~l~~~~~--~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             BCCCEEECTTCEECHHHH--HHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCEEEccCCCcCHHHH--HHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            4455555555544432 3  333444445555555555444 233444444445555555444 33321 2222333444


Q ss_pred             CcEEEeecC-ccCcc-chHHHhcCC-CCcEEEccCC
Q 037844           88 LKVLAIIKC-NFCSR-ITFLLRNLT-QLIILHLSQN  120 (126)
Q Consensus        88 L~~l~l~~n-~~~~~-~p~~l~~~~-~L~~l~l~~n  120 (126)
                      |+.|++++| .+++. ++..+..++ +|++|++++|
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            444444444 34322 233334444 4444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=1.5e-13  Score=101.55  Aligned_cols=90  Identities=22%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             CccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcC
Q 037844           30 SSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNL  109 (126)
Q Consensus        30 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~  109 (126)
                      +..+..++.|+.|++++|.+.  .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+|..++.+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            456778899999999999997  57877889999999999999998 78998999999999999999999 889999999


Q ss_pred             CCCcEEEccCCcCe
Q 037844          110 TQLIILHLSQNSFR  123 (126)
Q Consensus       110 ~~L~~l~l~~n~i~  123 (126)
                      ++|++|++++|.++
T Consensus       293 ~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT  306 (727)
T ss_dssp             TTCSEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
Confidence            99999999999886

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.43  E-value=1.5e-13  Score=94.50  Aligned_cols=113  Identities=19%  Similarity=0.168  Sum_probs=79.7

Q ss_pred             CceEEEEcCCCCccc-----ccCCCccccccccCceeEeccCcccC---cchhhhhhCCCCCCEEEcccCcCcCc----C
Q 037844           11 NHVIKLDLPSSCLQD-----SINSSSGLFKLIHLKWLILLFNKFSG---FEILIKIINLSRLSYLNLFYSSLSGG----L   78 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~l~l~~~~~~~~----~   78 (126)
                      ++|++|++++|.+..     ..  +..+..+++|++|++++|.++.   ..+|..+..+++|+.+++++|.+++.    +
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~--~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLL--LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHH--HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHH--HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            567777888777762     22  3356677788888888888731   14566677788888888888887644    3


Q ss_pred             Cccc--cCCCCCcEEEeecCccCc----cchHHH-hcCCCCcEEEccCCcCeec
Q 037844           79 PVST--KYLRSLKVLAIIKCNFCS----RITFLL-RNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        79 ~~~~--~~l~~L~~l~l~~n~~~~----~~p~~l-~~~~~L~~l~l~~n~i~~~  125 (126)
                      +..+  +.+++|+.|++++|.+++    .+|..+ ..+++|++|++++|++++.
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            4444  337888888888888886    367666 5578888888888888764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=1.6e-13  Score=92.52  Aligned_cols=111  Identities=21%  Similarity=0.201  Sum_probs=94.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ++++.|++++|.+.+..   ..+..+++|++|++++|.+.+..++..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus        70 ~~l~~L~l~~n~l~~~~---~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPL---AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCC---CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccc---hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            57889999999888664   346678999999999999873237778889999999999999988777788888999999


Q ss_pred             EEeecC-ccCc-cchHHHhcCCCCcEEEccCC-cCee
Q 037844           91 LAIIKC-NFCS-RITFLLRNLTQLIILHLSQN-SFRG  124 (126)
Q Consensus        91 l~l~~n-~~~~-~~p~~l~~~~~L~~l~l~~n-~i~~  124 (126)
                      |++++| .+++ .++..+..+++|++|++++| .+++
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            999999 6775 36777889999999999999 8875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.39  E-value=2.1e-12  Score=90.91  Aligned_cols=101  Identities=21%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|.+++ .  | .+..+++|++|++++|.+++  ++  ++.+++|+++++++|.+++. +  ++.++.|+
T Consensus        41 l~~L~~L~Ls~n~l~~-~--~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-M--T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSCCCC-C--T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             cCCCCEEEccCCCccc-C--h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            3678888888888774 4  4 56777888888888888873  33  66778888888888887753 2  67777888


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +|++++|.+++ ++  ++.+++|++|++++|.+++
T Consensus       110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred             EEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence            88888887774 43  6677777777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.39  E-value=1.3e-12  Score=94.24  Aligned_cols=99  Identities=14%  Similarity=0.101  Sum_probs=72.8

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC--
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL--   88 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L--   88 (126)
                      ++|+.|++++|.+++ +  |.   .+++|++|++++|.++  .+|. +.  ++|+.|++++|.++ .+|. +..  +|  
T Consensus       140 ~~L~~L~Ls~N~l~~-l--p~---~l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~  204 (571)
T 3cvr_A          140 ALLEYINADNNQLTM-L--PE---LPTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHH  204 (571)
T ss_dssp             TTCCEEECCSSCCSC-C--CC---CCTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred             ccccEEeCCCCccCc-C--CC---cCCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence            566777777777663 4  43   4567778888888776  2555 44  78888888888887 5555 443  66  


Q ss_pred             -----cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 -----KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 -----~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                           +.|++++|.++ .+|..+..+++|+.|++++|++++.
T Consensus       205 ~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             ---CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence                 99999999998 6888888899999999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.38  E-value=2.3e-13  Score=93.56  Aligned_cols=40  Identities=28%  Similarity=0.388  Sum_probs=17.2

Q ss_pred             cCCCCCcEEEeecCccC----ccchHHHhcCCCCcEEEccCCcC
Q 037844           83 KYLRSLKVLAIIKCNFC----SRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        83 ~~l~~L~~l~l~~n~~~----~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      ..+++|+.|++++|.++    ..+|..+..+++|++|++++|.+
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            33444444444444442    23333444444444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=3.5e-13  Score=92.08  Aligned_cols=109  Identities=19%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             ceEEEEcCCCCcccccCCC----ccccccc-cCceeEeccCcccCcchhhhhhCC-----CCCCEEEcccCcCcCcCCcc
Q 037844           12 HVIKLDLPSSCLQDSINSS----SGLFKLI-HLKWLILLFNKFSGFEILIKIINL-----SRLSYLNLFYSSLSGGLPVS   81 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~   81 (126)
                      ++++|++++|.+.+..  +    ..+..++ +|++|++++|.+.+ ..+..++.+     ++|+++++++|.+++..+..
T Consensus        23 ~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           23 GVTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             TCCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            4666666666665432  2    3344455 56666666666652 333334332     56666666666655443332


Q ss_pred             c----cCC-CCCcEEEeecCccCccchHHHh----c-CCCCcEEEccCCcCe
Q 037844           82 T----KYL-RSLKVLAIIKCNFCSRITFLLR----N-LTQLIILHLSQNSFR  123 (126)
Q Consensus        82 ~----~~l-~~L~~l~l~~n~~~~~~p~~l~----~-~~~L~~l~l~~n~i~  123 (126)
                      +    ..+ +.|+.|++++|.+++..+..+.    . .++|++|++++|.++
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            2    222 4555555555555544333322    2 135555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=5.9e-15  Score=93.18  Aligned_cols=106  Identities=21%  Similarity=0.204  Sum_probs=89.4

Q ss_pred             CceEEEEcCCCCcccccCCCc------cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccC
Q 037844           11 NHVIKLDLPSSCLQDSINSSS------GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKY   84 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~   84 (126)
                      ..++.++++.+.+.+..  |.      .+..+++|++|++++|.+.  .+| .+..+++|+.+++++|.++ .+|..+..
T Consensus        18 ~~l~~l~l~~~~l~~~~--~~l~~l~~~~~~l~~L~~L~ls~n~l~--~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMI--PPIEKMDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             TCCCCTTCSEEECCBCC--TTCCCCHHHHHHTTTCSEEECSEEEES--CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             ccccCcchheeEecccc--CcHhhhhHHHhcCCCCCEEECCCCCCc--ccc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            45666777777777665  44      7888999999999999998  366 7888999999999999997 66777777


Q ss_pred             CCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           85 LRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        85 l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +++|+.|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence            8999999999999994 55 68888999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.35  E-value=6.4e-12  Score=88.45  Aligned_cols=97  Identities=24%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+++ .  +  +..+++|++|++++|.+++  ++  ++.+++|+++++++|.+++ .+  ++.+++|
T Consensus        62 ~l~~L~~L~Ls~n~l~~-~--~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L  129 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITT-L--D--LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL  129 (457)
T ss_dssp             GCTTCSEEECCSSCCSC-C--C--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred             ccCCCCEEEccCCcCCe-E--c--cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence            44677888888887773 3  3  5667777777777777763  32  6667777777777777764 22  6666777


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      +.|++++|.+++ ++  ++.+++|+++++++|
T Consensus       130 ~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          130 TYLNCARNTLTE-ID--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CEEECTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred             CEEECCCCccce-ec--cccCCcCCEEECCCC
Confidence            777777777664 22  444445555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.33  E-value=9.7e-12  Score=90.53  Aligned_cols=79  Identities=24%  Similarity=0.267  Sum_probs=63.9

Q ss_pred             ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844           37 IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH  116 (126)
Q Consensus        37 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~  116 (126)
                      ++|+.|++++|.++  .+|   ..+++|+.+++++|.++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus       221 ~~L~~L~Ls~N~L~--~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGNRLT--SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCCccC--cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            56777777777776  244   34678888888888887 4454   5678999999999999 7898999999999999


Q ss_pred             ccCCcCeec
Q 037844          117 LSQNSFRGR  125 (126)
Q Consensus       117 l~~n~i~~~  125 (126)
                      +++|++++.
T Consensus       291 L~~N~l~~~  299 (622)
T 3g06_A          291 LEGNPLSER  299 (622)
T ss_dssp             CCSCCCCHH
T ss_pred             ecCCCCCCc
Confidence            999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.31  E-value=6.6e-13  Score=92.82  Aligned_cols=87  Identities=18%  Similarity=0.111  Sum_probs=54.3

Q ss_pred             cCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCcCCccccC-----CCCCcEEEeecCccCc----cchHH
Q 037844           38 HLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGGLPVSTKY-----LRSLKVLAIIKCNFCS----RITFL  105 (126)
Q Consensus        38 ~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-----l~~L~~l~l~~n~~~~----~~p~~  105 (126)
                      +|++|++++|.+++.   .++..+..+++|+.+++++|.+++..+..+..     .+.|+.|++++|.+++    .+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            455555555555421   12344455677777777777666443333321     5577788888777775    56677


Q ss_pred             HhcCCCCcEEEccCCcCee
Q 037844          106 LRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus       106 l~~~~~L~~l~l~~n~i~~  124 (126)
                      +..+++|+++++++|++++
T Consensus       394 l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          394 LLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHCCCCCEEECCSSSCCH
T ss_pred             HHhCCCccEEECCCCCCCH
Confidence            7777888888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.28  E-value=2.2e-11  Score=87.90  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=24.6

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS   75 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~   75 (126)
                      +++++|++++|.++ .+  |   ..+++|++|++++|.+++  +|. +..  +|+.|++++|.++
T Consensus        80 ~~L~~L~Ls~N~l~-~i--p---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~  133 (571)
T 3cvr_A           80 PQITVLEITQNALI-SL--P---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLT  133 (571)
T ss_dssp             TTCSEEECCSSCCS-CC--C---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCS
T ss_pred             CCCCEEECcCCCCc-cc--c---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcCC
Confidence            34555555555555 33  3   223445555555555541  333 222  4444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.28  E-value=3.4e-12  Score=87.16  Aligned_cols=108  Identities=15%  Similarity=0.040  Sum_probs=86.3

Q ss_pred             EEEcCCCCcccccCCCccccccccCceeEeccCcccCcchh----hhhhCCC-CCCEEEcccCcCcCcCCccccCC----
Q 037844           15 KLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEIL----IKIINLS-RLSYLNLFYSSLSGGLPVSTKYL----   85 (126)
Q Consensus        15 ~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l----   85 (126)
                      .+.+++|.+++..  |..+...++|++|++++|.+.+ ..+    ..+..++ +|+++++++|.+++..+..+..+    
T Consensus         2 ~~~ls~n~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            2 NYKLTLHPGSNPV--EEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EEECCCCTTCCHH--HHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             ccccccccchHHH--HHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            3578899998776  5555555669999999999973 444    5677788 89999999999987766666654    


Q ss_pred             -CCCcEEEeecCccCccchHHH----hcC-CCCcEEEccCCcCeec
Q 037844           86 -RSLKVLAIIKCNFCSRITFLL----RNL-TQLIILHLSQNSFRGR  125 (126)
Q Consensus        86 -~~L~~l~l~~n~~~~~~p~~l----~~~-~~L~~l~l~~n~i~~~  125 (126)
                       +.|+.|++++|.+++..+..+    ..+ ++|++|++++|.+++.
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence             899999999999997776644    444 8999999999998763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=2.8e-11  Score=82.06  Aligned_cols=86  Identities=20%  Similarity=0.089  Sum_probs=72.2

Q ss_pred             CceEEEEcCC-CCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           11 NHVIKLDLPS-SCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+|++|++++ |.+....  +..+..+++|++|+|++|.+++ ..|..|..+++|+.|++++|++++..+..+..++ |+
T Consensus        31 ~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~  106 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ  106 (347)
T ss_dssp             SCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred             CCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence            5699999996 9999665  5778999999999999999984 5667789999999999999999855444455555 99


Q ss_pred             EEEeecCccCc
Q 037844           90 VLAIIKCNFCS  100 (126)
Q Consensus        90 ~l~l~~n~~~~  100 (126)
                      .|++.+|++.-
T Consensus       107 ~l~l~~N~~~c  117 (347)
T 2ifg_A          107 ELVLSGNPLHC  117 (347)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEEeeCCCccC
Confidence            99999998863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.22  E-value=2.7e-11  Score=82.41  Aligned_cols=87  Identities=17%  Similarity=0.023  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchh-hhhhCCCCCCE-EEcccCcCcCcCCccccCCCCC
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEIL-IKIINLSRLSY-LNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~-l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .++++|++++|+++...  +..|..+++|++|++++|.+.+ .++ ..|..++++.. +.+..|++....+..+..+++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCCSEEC--TTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCEEEccCCcCCCcC--HHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            57889999999988443  4568889999999999998753 344 34567777665 5556677776666777888888


Q ss_pred             cEEEeecCccCc
Q 037844           89 KVLAIIKCNFCS  100 (126)
Q Consensus        89 ~~l~l~~n~~~~  100 (126)
                      +++++++|.+..
T Consensus       107 ~~L~l~~n~l~~  118 (350)
T 4ay9_X          107 QYLLISNTGIKH  118 (350)
T ss_dssp             CEEEEEEECCSS
T ss_pred             cccccccccccc
Confidence            888888887763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=2.9e-12  Score=89.57  Aligned_cols=62  Identities=18%  Similarity=0.045  Sum_probs=31.4

Q ss_pred             CCCEEEcccCcCcCc----CCccccCCCCCcEEEeecCccCccchHHHhc-----CCCCcEEEccCCcCee
Q 037844           63 RLSYLNLFYSSLSGG----LPVSTKYLRSLKVLAIIKCNFCSRITFLLRN-----LTQLIILHLSQNSFRG  124 (126)
Q Consensus        63 ~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~-----~~~L~~l~l~~n~i~~  124 (126)
                      +|+.+++++|.+++.    ++..+..++.|+.|++++|.+++..+..+..     .++|++|++++|.+++
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            455555555544432    2223334456666666666655443333332     4566666666666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.21  E-value=1e-10  Score=82.28  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=51.6

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc-
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK-   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~-   89 (126)
                      +++++|++++|++.+ +  | .+..+++|++|++++|.+++  +|..   ..+|+++++++|.+++ +| .++.+++|+ 
T Consensus       131 ~~L~~L~L~~n~l~~-l--p-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-L--P-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCCSS-C--C-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             CCCCEEECcCCCCCC-C--c-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence            466677777776663 4  4 46666666666666666652  3321   2345555555554442 22 233333333 


Q ss_pred             -------------------EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 -------------------VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 -------------------~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                                         .+++++|.+. .+|. ++.+++|+++++++|.+++
T Consensus       200 L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          200 IYADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             EECCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence                               3444444333 3342 4555566666666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=1.5e-11  Score=84.60  Aligned_cols=88  Identities=17%  Similarity=0.153  Sum_probs=51.2

Q ss_pred             ccCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCcC----CccccCCCCCcEEEeecCccCcc----chHH
Q 037844           37 IHLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGGL----PVSTKYLRSLKVLAIIKCNFCSR----ITFL  105 (126)
Q Consensus        37 ~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~l~l~~n~~~~~----~p~~  105 (126)
                      +.|++|++++|.+++.   .++..+..+++|+++++++|.+++..    +..+...++|+.|++++|.+++.    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            4566666666665410   12233345666777777777665322    23344556777777777777642    2334


Q ss_pred             HhcCCCCcEEEccCCcCee
Q 037844          106 LRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus       106 l~~~~~L~~l~l~~n~i~~  124 (126)
                      +...++|++|++++|.|++
T Consensus       235 L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCH
T ss_pred             HHhCCCCCEEeccCCCCCH
Confidence            4456777777777777754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.18  E-value=1.1e-10  Score=82.07  Aligned_cols=79  Identities=24%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844           37 IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH  116 (126)
Q Consensus        37 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~  116 (126)
                      ++|++|++++|.++  .+| .++.+++|+++++++|.+++ +|..   .++|++|++++|.+++ +| .++.+++|++++
T Consensus       131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            46777777777776  255 47777778888887777763 4432   2477888888887774 55 477788888888


Q ss_pred             ccCCcCee
Q 037844          117 LSQNSFRG  124 (126)
Q Consensus       117 l~~n~i~~  124 (126)
                      +++|.+++
T Consensus       202 l~~N~l~~  209 (454)
T 1jl5_A          202 ADNNSLKK  209 (454)
T ss_dssp             CCSSCCSS
T ss_pred             CCCCcCCc
Confidence            88888765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.12  E-value=2.5e-10  Score=83.16  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS   75 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~   75 (126)
                      +++++|++++|.++ .+  |.   .+++|++|++++|.++  .+|.   .+++|++|++++|.++
T Consensus        61 ~~L~~L~L~~N~l~-~l--p~---~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SL--PA---LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             TTCSEEEECSCCCS-CC--CC---CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCC
T ss_pred             CCCcEEEecCCCCC-CC--CC---cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCC
Confidence            45566666666555 33  32   3455666666666654  2333   3455555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=1.6e-10  Score=78.56  Aligned_cols=104  Identities=15%  Similarity=0.044  Sum_probs=84.3

Q ss_pred             EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcCC-ccccCCCCCcE-
Q 037844           14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGLP-VSTKYLRSLKV-   90 (126)
Q Consensus        14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~-   90 (126)
                      ++++-++++++ .+  |..+.  +++++|++++|.++  .+|. .|..+++|++|++++|.+.+.++ ..|..++.++. 
T Consensus        12 ~~v~C~~~~Lt-~i--P~~l~--~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVT-EI--PSDLP--RNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCC-SC--CTTCC--TTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCC-cc--CcCcC--CCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            46788888888 66  66553  57999999999998  4554 58899999999999999865555 45778888765 


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +.+..|++....|..+..+++|+++++++|.+++
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             hcccCCcccccCchhhhhcccccccccccccccc
Confidence            5677899996667888999999999999998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=4.7e-11  Score=82.12  Aligned_cols=111  Identities=17%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             CceEEEEcCCCCcccccCCCccc-cccccCceeEeccCcccCcchhhhhh-----CCCCCCEEEcccCcCcCc----CCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGL-FKLIHLKWLILLFNKFSGFEILIKII-----NLSRLSYLNLFYSSLSGG----LPV   80 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~l~l~~~~~~~~----~~~   80 (126)
                      .++++|++++|.+.+..  ...+ ..+++|++|++++|.+.+ .....++     ..+.|+.+++++|.++..    ++.
T Consensus       101 ~~L~~L~Ls~n~l~~~~--~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~  177 (372)
T 3un9_A          101 HALDEVNLASCQLDPAG--LRTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME  177 (372)
T ss_dssp             SCEEEEECTTCCCCHHH--HHHTHHHHHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHH--HHHHHHHHHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence            58899999999887543  2222 345788999999998862 3333332     357899999999998642    233


Q ss_pred             cccCCCCCcEEEeecCccCccc----hHHHhcCCCCcEEEccCCcCee
Q 037844           81 STKYLRSLKVLAIIKCNFCSRI----TFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        81 ~~~~l~~L~~l~l~~n~~~~~~----p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .+...++|++|++++|.+++..    +..+...++|+.|++++|.|++
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            3466788999999999987533    4566777899999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.99  E-value=3.5e-10  Score=70.72  Aligned_cols=112  Identities=15%  Similarity=0.059  Sum_probs=85.2

Q ss_pred             CCceEEEEcCCC-Ccccc----cCCCccccccccCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCc----
Q 037844           10 RNHVIKLDLPSS-CLQDS----INSSSGLFKLIHLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGG----   77 (126)
Q Consensus        10 ~~~l~~L~ls~n-~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~----   77 (126)
                      .+++++|++++| .+...    +  ...+...++|++|++++|.+...   .+...+...+.|++|++++|.++..    
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l--~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKAC--AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHH--HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHH--HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            478999999999 88743    2  23445568899999999998621   1344455668999999999999853    


Q ss_pred             CCccccCCCCCcEEEe--ecCccCcc----chHHHhcCCCCcEEEccCCcCe
Q 037844           78 LPVSTKYLRSLKVLAI--IKCNFCSR----ITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        78 ~~~~~~~l~~L~~l~l--~~n~~~~~----~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +...+...++|+.|++  ++|.+...    +...+...++|+.|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2345566789999999  88999864    3445667789999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=4.5e-09  Score=70.84  Aligned_cols=103  Identities=14%  Similarity=-0.051  Sum_probs=84.4

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCC-EEEcccCcCcCcCCccccCCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLS-YLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      .++++++++++|.++...  +..|..+.+|+.+++..| +. ..-+..|..+.+|+ .++++. .++...+..|..+++|
T Consensus       225 ~~~L~~l~L~~n~i~~I~--~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIP--DFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEEC--TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCcceec--HhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            468999999999888544  567888999999999988 55 24456688899999 999988 6665666788999999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEc
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHL  117 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l  117 (126)
                      +.+++.+|.+....+..|.++++|+.++.
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999998666668889999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.91  E-value=2.4e-10  Score=82.06  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCCcccccCCCccccc-ccc-CceeEeccCc-ccCcchhhhhhCCCCCCEEEcccCcCcCcCCc----cc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFK-LIH-LKWLILLFNK-FSGFEILIKIINLSRLSYLNLFYSSLSGGLPV----ST   82 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~-l~~-L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~----~~   82 (126)
                      .+++++|++++|.+++..  +..+.. ++. |++|++++|. +....++.....+++|++|++++|.+.+....    ..
T Consensus       111 ~~~L~~L~L~~~~i~~~~--~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLD--LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             CTTCCEEEEESCBCCHHH--HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHH--HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            356777788777766543  333433 233 7777777765 22111223334567777777777766544221    23


Q ss_pred             cCCCCCcEEEeecCccC----ccchHHHhcCCCCcEEEccCCcCee
Q 037844           83 KYLRSLKVLAIIKCNFC----SRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        83 ~~l~~L~~l~l~~n~~~----~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ..+++|+.|+++.|.+.    +.++..+..+++|+.|++++|.+.+
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            45667777777777665    3444555666777777777766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.81  E-value=9e-09  Score=73.94  Aligned_cols=35  Identities=11%  Similarity=0.214  Sum_probs=16.6

Q ss_pred             CCCCCcEEEeecCccCccch-HHHhcCCCCcEEEcc
Q 037844           84 YLRSLKVLAIIKCNFCSRIT-FLLRNLTQLIILHLS  118 (126)
Q Consensus        84 ~l~~L~~l~l~~n~~~~~~p-~~l~~~~~L~~l~l~  118 (126)
                      .+++|+.|++++|.+++... ..+..+++|+.|++.
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            34455555555555443222 223455555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.80  E-value=1.4e-08  Score=66.91  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             ccccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCccccCCC--CCcEEEeecCccCccch-------H
Q 037844           35 KLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR--SLKVLAIIKCNFCSRIT-------F  104 (126)
Q Consensus        35 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~--~L~~l~l~~n~~~~~~p-------~  104 (126)
                      .+++|+.|++++|.+.+- .++..+..+++|+.|++++|.+.+.  ..+..+.  .|+.|++.+|++++.+|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            456777777777777620 1334455677777777777777643  2233333  77777777777775444       2


Q ss_pred             HHhcCCCCcEEE
Q 037844          105 LLRNLTQLIILH  116 (126)
Q Consensus       105 ~l~~~~~L~~l~  116 (126)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            456677777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.77  E-value=5.2e-09  Score=75.15  Aligned_cols=109  Identities=17%  Similarity=0.066  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCCCcccccCCCcccc-ccccCceeEeccC-cccCcchhhhhhCCCCCCEEEcccCcCcCcCCcccc----
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFN-KFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTK----   83 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~----   83 (126)
                      .+++++|++++|.+++..  +..+. .+++|++|++.+| .+....++.....+++|++|++++|.+++..+..+.    
T Consensus       104 ~~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            357888888888777654  44444 5778888888888 444112444445788888888888887654443332    


Q ss_pred             CCCCCcEEEeecCc--cCc-cchHHHhcCCCCcEEEccCC
Q 037844           84 YLRSLKVLAIIKCN--FCS-RITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        84 ~l~~L~~l~l~~n~--~~~-~~p~~l~~~~~L~~l~l~~n  120 (126)
                      .+++|+.|++++|.  +.. .++.....+++|++|++++|
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            55678888888775  321 12233355678888888776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.69  E-value=4e-09  Score=75.76  Aligned_cols=86  Identities=19%  Similarity=0.149  Sum_probs=42.1

Q ss_pred             cccCceeEeccCcccCcchhhhhhC-CCCCCEEEcccCcCcCcCCccc-cCCCCCcEEEeecCccCccchH-HHhcCCCC
Q 037844           36 LIHLKWLILLFNKFSGFEILIKIIN-LSRLSYLNLFYSSLSGGLPVST-KYLRSLKVLAIIKCNFCSRITF-LLRNLTQL  112 (126)
Q Consensus        36 l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~p~-~l~~~~~L  112 (126)
                      +++|++|++++ .+++ .....++. +++|+.+++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+++|
T Consensus       431 ~~~L~~L~L~~-~l~~-~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTD-KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             CTTCCEEECCS-SCCH-HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             CCCccEEeecC-cccH-HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            34455555544 3331 22233333 5556666666665543322222 3456666666666666433332 23345666


Q ss_pred             cEEEccCCcCe
Q 037844          113 IILHLSQNSFR  123 (126)
Q Consensus       113 ~~l~l~~n~i~  123 (126)
                      +.|++++|+++
T Consensus       509 ~~L~l~~~~~~  519 (594)
T 2p1m_B          509 RSLWMSSCSVS  519 (594)
T ss_dssp             SEEEEESSCCB
T ss_pred             CEEeeeCCCCC
Confidence            66666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.69  E-value=2.4e-08  Score=61.89  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=37.6

Q ss_pred             cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCc-CcCcCCccccCC----CCCcEEEeecCc-cCccchHHHhcCCC
Q 037844           38 HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSS-LSGGLPVSTKYL----RSLKVLAIIKCN-FCSRITFLLRNLTQ  111 (126)
Q Consensus        38 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l----~~L~~l~l~~n~-~~~~~p~~l~~~~~  111 (126)
                      .|++|+++++.++. .--..+..+++|+.|+++++. +++..-..+..+    ++|+.|++++|. +++.-...+.++++
T Consensus        62 ~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            35555555555442 222334455555555555542 333222223332    245555555543 44443444445555


Q ss_pred             CcEEEccCC
Q 037844          112 LIILHLSQN  120 (126)
Q Consensus       112 L~~l~l~~n  120 (126)
                      |++|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.68  E-value=1.7e-07  Score=63.10  Aligned_cols=85  Identities=9%  Similarity=-0.112  Sum_probs=57.3

Q ss_pred             cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc-EEEeecCccCccchHHHhcCCCCcE
Q 037844           36 LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK-VLAIIKCNFCSRITFLLRNLTQLII  114 (126)
Q Consensus        36 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~p~~l~~~~~L~~  114 (126)
                      +++|+.+++..|.++ ...+..|..+.+|+.++++.| +.......|..+.+|+ .+++.. .++...+..|..+++|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            456777777777665 233345667777777777776 5444455677777787 777766 565444567778888888


Q ss_pred             EEccCCcCe
Q 037844          115 LHLSQNSFR  123 (126)
Q Consensus       115 l~l~~n~i~  123 (126)
                      +++..|.++
T Consensus       302 l~l~~n~i~  310 (329)
T 3sb4_A          302 VLATGDKIT  310 (329)
T ss_dssp             EEECSSCCC
T ss_pred             EEeCCCccC
Confidence            888776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=3.9e-08  Score=64.81  Aligned_cols=78  Identities=23%  Similarity=0.143  Sum_probs=60.3

Q ss_pred             CCceEEEEcCCCCccc--ccCCCccccccccCceeEeccCcccCcchhhhhhCCC--CCCEEEcccCcCcCcCCc-----
Q 037844           10 RNHVIKLDLPSSCLQD--SINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLS--RLSYLNLFYSSLSGGLPV-----   80 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--~L~~l~l~~~~~~~~~~~-----   80 (126)
                      .++|++|++++|.+.+  .+  +..+..+++|+.|+|++|.+.+  + ..+..+.  .|+.|++.+|.+.+.+|.     
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l--~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDM--SSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGG--TTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccc--hhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            4789999999999986  34  4556689999999999999984  2 2234444  899999999999876552     


Q ss_pred             --cccCCCCCcEEE
Q 037844           81 --STKYLRSLKVLA   92 (126)
Q Consensus        81 --~~~~l~~L~~l~   92 (126)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              245788888864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.65  E-value=2.6e-08  Score=61.73  Aligned_cols=86  Identities=13%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCc-ccCcchhhhhhCC----CCCCEEEcccC-cCcCcCCccccC
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNK-FSGFEILIKIINL----SRLSYLNLFYS-SLSGGLPVSTKY   84 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l----~~L~~l~l~~~-~~~~~~~~~~~~   84 (126)
                      -.|+.|+++++.+++.-  -..+..+++|+.|++++|. ++ +..-..++.+    ++|++|+++++ ++++.....+..
T Consensus        61 ~~L~~LDLs~~~Itd~G--L~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIG--FDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGG--GGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             ceEeEEeCcCCCccHHH--HHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            36999999999988765  4567889999999999996 66 3444556664    47999999997 477655566778


Q ss_pred             CCCCcEEEeecCc-cC
Q 037844           85 LRSLKVLAIIKCN-FC   99 (126)
Q Consensus        85 l~~L~~l~l~~n~-~~   99 (126)
                      +++|+.|++++|+ ++
T Consensus       138 ~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             CTTCCEEEEESCTTCC
T ss_pred             CCCCCEEECCCCCCCC
Confidence            9999999999997 44

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.52  E-value=2.7e-08  Score=68.28  Aligned_cols=110  Identities=17%  Similarity=0.166  Sum_probs=54.3

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhh--CCCCCCEEEccc--CcCcCc-----CC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKII--NLSRLSYLNLFY--SSLSGG-----LP   79 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~l~l~~--~~~~~~-----~~   79 (126)
                      ..++|++|.+++|.-. .+  +. + .+++|+.|++..+.+.. .....++  .+++|+.|++..  +...+.     +.
T Consensus       170 ~~P~L~~L~L~g~~~l-~l--~~-~-~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-SI--GK-K-PRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             TCTTCCEEEEECCBTC-BC--CS-C-BCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             cCCCCcEEEEeCCCCc-ee--cc-c-cCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3467888888877311 22  22 2 25667777777666642 2223333  466677766642  111100     00


Q ss_pred             ccc--cCCCCCcEEEeecCccCccchHHHh---cCCCCcEEEccCCcCee
Q 037844           80 VST--KYLRSLKVLAIIKCNFCSRITFLLR---NLTQLIILHLSQNSFRG  124 (126)
Q Consensus        80 ~~~--~~l~~L~~l~l~~n~~~~~~p~~l~---~~~~L~~l~l~~n~i~~  124 (126)
                      ..+  ..+++|+.|++..|.+.+..+..+.   .+++|++|+++.|.+++
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            111  1345666666666655543333332   24455666665555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=1.9e-07  Score=58.22  Aligned_cols=93  Identities=12%  Similarity=-0.023  Sum_probs=70.5

Q ss_pred             cccccccCceeEeccC-cccCc---chhhhhhCCCCCCEEEcccCcCcCcC----CccccCCCCCcEEEeecCccCcc--
Q 037844           32 GLFKLIHLKWLILLFN-KFSGF---EILIKIINLSRLSYLNLFYSSLSGGL----PVSTKYLRSLKVLAIIKCNFCSR--  101 (126)
Q Consensus        32 ~~~~l~~L~~L~l~~n-~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~l~l~~n~~~~~--  101 (126)
                      .+...+.|++|++++| .+...   .+...+...+.|++|++++|.+....    ...+...+.|+.|++++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4456788999999999 87521   13445566789999999999997432    23344567899999999999864  


Q ss_pred             --chHHHhcCCCCcEEEc--cCCcCee
Q 037844          102 --ITFLLRNLTQLIILHL--SQNSFRG  124 (126)
Q Consensus       102 --~p~~l~~~~~L~~l~l--~~n~i~~  124 (126)
                        +...+...++|++|++  ++|.|+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence              3456677789999999  8898875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.45  E-value=9.5e-07  Score=60.59  Aligned_cols=113  Identities=15%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             CCceEEEEcCCCCcccccCCCcccc--ccccCceeEecc--CcccCc----chhhhh--hCCCCCCEEEcccCcCcCcCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLF--KLIHLKWLILLF--NKFSGF----EILIKI--INLSRLSYLNLFYSSLSGGLP   79 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~----~~~~~~--~~l~~L~~l~l~~~~~~~~~~   79 (126)
                      .++|+.|++..+.+....  ...+.  .+++|+.|++..  +...+.    .+...+  ..+++|+.|++.+|.+.+..+
T Consensus       192 ~~~L~~L~L~~~~l~~~~--l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~  269 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSV--VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV  269 (362)
T ss_dssp             CTTCSEEEEECSBCCHHH--HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred             CCCCcEEEEecCCCChHH--HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH
Confidence            468999999988876433  22333  678899998853  221111    111222  247899999999888764332


Q ss_pred             ccc---cCCCCCcEEEeecCccCccc----hHHHhcCCCCcEEEccCCcCee
Q 037844           80 VST---KYLRSLKVLAIIKCNFCSRI----TFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        80 ~~~---~~l~~L~~l~l~~n~~~~~~----p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ..+   ..++.|+.|+++.|.+.+..    +..+..+++|+.|+++.|.|+.
T Consensus       270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            222   35789999999999988643    3334567899999999998875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.97  E-value=4.4e-05  Score=52.96  Aligned_cols=90  Identities=10%  Similarity=-0.073  Sum_probs=49.8

Q ss_pred             CccccccccCceeEeccCcccC----cchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHH
Q 037844           30 SSGLFKLIHLKWLILLFNKFSG----FEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFL  105 (126)
Q Consensus        30 ~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~  105 (126)
                      ...|..+++|+.+.+..+.+..    ...+..|..|++|+.+.++. .+.......|..+..|+.+.+..+ +...-...
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            3455566667776666654320    02234455666677776663 344333445666667777766433 44333445


Q ss_pred             HhcCCCCcEEEccCCcC
Q 037844          106 LRNLTQLIILHLSQNSF  122 (126)
Q Consensus       106 l~~~~~L~~l~l~~n~i  122 (126)
                      |..+ +|+.+++.+|.+
T Consensus       342 F~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             SSSS-CCCEEEECCSSC
T ss_pred             CCCC-CCCEEEEcCCCC
Confidence            6666 677777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.96  E-value=5.5e-06  Score=52.20  Aligned_cols=109  Identities=14%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             CceEEEEcCCC-Ccccc----cCCCccccccccCceeEeccCcccCcc----hhhhhhCCCCCCEEEcccCcCcCcCC--
Q 037844           11 NHVIKLDLPSS-CLQDS----INSSSGLFKLIHLKWLILLFNKFSGFE----ILIKIINLSRLSYLNLFYSSLSGGLP--   79 (126)
Q Consensus        11 ~~l~~L~ls~n-~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~--   79 (126)
                      +.+++|++++| ++.+.    +  ...+..-..|+.|+|++|.+. +.    +.+.+..-..|+.|+++.|.++....  
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~l--a~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSL--IEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHH--HHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHH--HHHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            67999999985 77642    2  234455578999999999986 22    33344456889999999999974432  


Q ss_pred             --ccccCCCCCcEEEeecC---ccCc----cchHHHhcCCCCcEEEccCCcC
Q 037844           80 --VSTKYLRSLKVLAIIKC---NFCS----RITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        80 --~~~~~l~~L~~l~l~~n---~~~~----~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                        ..+..-..|+.|++++|   .+..    .+...+..-++|+.++++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence              23344467999999765   4443    2445667778999999987754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.92  E-value=8.5e-05  Score=51.54  Aligned_cols=15  Identities=13%  Similarity=0.197  Sum_probs=7.3

Q ss_pred             hhhCCCCCCEEEccc
Q 037844           57 KIINLSRLSYLNLFY   71 (126)
Q Consensus        57 ~~~~l~~L~~l~l~~   71 (126)
                      .|..+++|+.++++.
T Consensus       221 aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          221 AFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTTCTTCCCEECCT
T ss_pred             HhhCCCCCCEEecCC
Confidence            344455555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.55  E-value=0.0014  Score=45.07  Aligned_cols=104  Identities=12%  Similarity=0.004  Sum_probs=61.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ..++.+.+..+... .-  ...+..+..|+.+.+... +. ..-...|..+.+|+.+.++.+ ++......|..+.+|+.
T Consensus       265 ~~L~~i~lp~~~~~-I~--~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          265 AYLASVKMPDSVVS-IG--TGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             SSCCEEECCTTCCE-EC--TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccEEecccccce-ec--CcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            45566666554322 22  345556667777766532 22 122345666778888887654 33333455777778888


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNS  121 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~  121 (126)
                      +.+..+ ++..-...|.++.+|+.+++.++.
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            877543 553344567777888888777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.45  E-value=0.00015  Score=45.64  Aligned_cols=87  Identities=11%  Similarity=0.021  Sum_probs=62.6

Q ss_pred             cccccCceeEeccC-cccCc---chhhhhhCCCCCCEEEcccCcCcCcCCccc----cCCCCCcEEEeecCccCccch--
Q 037844           34 FKLIHLKWLILLFN-KFSGF---EILIKIINLSRLSYLNLFYSSLSGGLPVST----KYLRSLKVLAIIKCNFCSRIT--  103 (126)
Q Consensus        34 ~~l~~L~~L~l~~n-~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~p--  103 (126)
                      ..-+.|++|++++| .+...   .+.+.+..-..|+.|++++|.+.+.....+    ..-..|+.|+|+.|.+.....  
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34467999999986 76410   134455566889999999999985433333    345789999999999986443  


Q ss_pred             --HHHhcCCCCcEEEccCC
Q 037844          104 --FLLRNLTQLIILHLSQN  120 (126)
Q Consensus       104 --~~l~~~~~L~~l~l~~n  120 (126)
                        +.+..-..|+.|++++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence              34555678999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.36  E-value=0.00069  Score=39.71  Aligned_cols=58  Identities=10%  Similarity=-0.085  Sum_probs=39.4

Q ss_pred             ceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccC
Q 037844           40 KWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFC   99 (126)
Q Consensus        40 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~   99 (126)
                      ..++-+++.++...+|..+  .++++.|++++|+++..-+..|..++.|+.++|.+|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3566666665411345432  346889999999888555556778888888988888763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.23  E-value=0.0021  Score=43.85  Aligned_cols=84  Identities=13%  Similarity=0.017  Sum_probs=45.2

Q ss_pred             cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCC
Q 037844           32 GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQ  111 (126)
Q Consensus        32 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~  111 (126)
                      .+..+..|+.+.+..+ +. ..-...+..+.+|+.+.+..+.++......|..+.+|+.+.+..+ ++..-...|.++.+
T Consensus       258 aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            3444455555555432 22 112234556677777777666655444455666677777766433 44233345666666


Q ss_pred             CcEEEcc
Q 037844          112 LIILHLS  118 (126)
Q Consensus       112 L~~l~l~  118 (126)
                      |+.+.+.
T Consensus       335 L~~i~ip  341 (379)
T 4h09_A          335 LSTISYP  341 (379)
T ss_dssp             CCCCCCC
T ss_pred             CCEEEEC
Confidence            6666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.15  E-value=0.0022  Score=44.08  Aligned_cols=106  Identities=10%  Similarity=-0.021  Sum_probs=68.2

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+.|+.+.+... +...-  ...|..+.+|+.+.+..+ ++ ..-...|..|.+|+.+.++.+ ++......|..+.+|
T Consensus       286 ~c~~L~~i~l~~~-i~~I~--~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          286 NCPALQDIEFSSR-ITELP--ESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             cccccccccCCCc-ccccC--ceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence            3467888888754 44333  466788899999999765 33 133456888999999999765 444445678899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +.+++.++...   ...+..+..|+.+.+..+.+.
T Consensus       360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             CEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            99999887644   234567788998888776553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.03  E-value=0.0034  Score=43.13  Aligned_cols=84  Identities=14%  Similarity=0.007  Sum_probs=50.0

Q ss_pred             ccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCC
Q 037844           33 LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQL  112 (126)
Q Consensus        33 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L  112 (126)
                      +..+.+|+.+.+..+ +. ..-...|..+.+|+.++++.+ ++......|..+.+|+.+.+..+ +...-...|.++.+|
T Consensus       293 F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            344555666665543 22 122344666777887777644 44334455677778888777655 543444567777788


Q ss_pred             cEEEccCC
Q 037844          113 IILHLSQN  120 (126)
Q Consensus       113 ~~l~l~~n  120 (126)
                      +.+++..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            88777543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.0018  Score=37.92  Aligned_cols=57  Identities=16%  Similarity=0.021  Sum_probs=43.1

Q ss_pred             EEEEcCCCCcc-cccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc
Q 037844           14 IKLDLPSSCLQ-DSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS   75 (126)
Q Consensus        14 ~~L~ls~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~   75 (126)
                      +.++-+++.++ ..+  |..+.  .++++|+|++|.++ ...+..|..+++|+.+++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~v--P~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASL--PTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTS--CSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccC--CCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            47888888876 244  54433  46999999999998 344455778999999999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.86  E-value=0.004  Score=42.78  Aligned_cols=99  Identities=13%  Similarity=-0.012  Sum_probs=69.6

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ...+++.+.+..+ +...-  ...+..+.+|+.+++..+ ++ ..-...|..+.+|+.+.++.+ +.......|..+.+|
T Consensus       295 ~~~~L~~i~l~~~-i~~I~--~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIG--EEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TCTTCCEEEECTT-CCEEC--TTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             ccccccccccccc-cceec--hhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3467788888765 44333  466788899999998754 44 233466788999999999877 554555678899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEE
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIIL  115 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l  115 (126)
                      +.+++..+ +. .+...|..+++|+.+
T Consensus       369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          369 KKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CEEEECCC-CE-EhhheecCCCCCcEE
Confidence            99999754 33 334566777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.41  E-value=0.046  Score=37.11  Aligned_cols=103  Identities=11%  Similarity=0.059  Sum_probs=66.9

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL   91 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l   91 (126)
                      .++.+.+..+ +....  ...+..+..|+.+.+..+ ++ ..-...+..+..++.+.++.+ +.......|..+..|+.+
T Consensus       218 ~l~~i~~~~~-~~~i~--~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          218 NLKKITITSG-VTTLG--DGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             SCSEEECCTT-CCEEC--TTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             ccceeeeccc-eeEEc--cccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            4455555443 22122  344556677777777655 22 122345667788888888655 332334557788999999


Q ss_pred             EeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           92 AIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      .+..+.+...-...|.++.+|+.+++..+
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc
Confidence            99888887555667888999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.3
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.58
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.7

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=3.1e-19  Score=118.18  Aligned_cols=122  Identities=24%  Similarity=0.297  Sum_probs=108.2

Q ss_pred             CCccccCCC--CceEEEEcCCCCccc--ccCCCccccccccCceeEecc-CcccCcchhhhhhCCCCCCEEEcccCcCcC
Q 037844            2 SDQAEKKQR--NHVIKLDLPSSCLQD--SINSSSGLFKLIHLKWLILLF-NKFSGFEILIKIINLSRLSYLNLFYSSLSG   76 (126)
Q Consensus         2 ~~~~~~~~~--~~l~~L~ls~n~l~~--~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~   76 (126)
                      .||.|+...  .+|+.|+++++.+.+  .+  |.++..+++|++|++++ |.+.| .+|..++.+++|++|++++|++.+
T Consensus        39 ~gv~C~~~~~~~~v~~L~L~~~~l~g~~~l--p~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~  115 (313)
T d1ogqa_          39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             TTEEECCSSSCCCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             CCeEEeCCCCcEEEEEEECCCCCCCCCCCC--ChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccc
Confidence            378898543  379999999999886  46  88999999999999997 78885 789999999999999999999998


Q ss_pred             cCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeecC
Q 037844           77 GLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI  126 (126)
Q Consensus        77 ~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~~  126 (126)
                      ..+..+..+..|+.++++.|.+.+.+|..+..++.++.+++++|.++|.+
T Consensus       116 ~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i  165 (313)
T d1ogqa_         116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI  165 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             cccccccchhhhcccccccccccccCchhhccCcccceeecccccccccc
Confidence            88888888999999999999999899999999999999999999988753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=4.1e-18  Score=105.95  Aligned_cols=112  Identities=21%  Similarity=0.083  Sum_probs=98.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +++++|++++|+++...+ +..+..+++|++|++++|.+. ...+..+..+++|+++++++|++.+..+..|..+++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~-~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCccccc-ccccCCCceEeeeeccccccc-cccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            579999999999975442 456788999999999999998 366777888999999999999999777778999999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |+|++|++++..+..|..+++|+++++++|++..
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999999997777788999999999999998864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.3e-17  Score=95.36  Aligned_cols=103  Identities=20%  Similarity=0.201  Sum_probs=87.3

Q ss_pred             EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEe
Q 037844           14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAI   93 (126)
Q Consensus        14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l   93 (126)
                      ++|++++|+++ .+  + .+..++.|++|++++|.++  .+|+.++.+++|+.+++++|.+++ ++ .+..+++|+.+++
T Consensus         1 R~L~Ls~n~l~-~l--~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLT-VL--C-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCS-SC--C-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCC-CC--c-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccc-cC-ccccccccCeEEC
Confidence            47899999998 54  3 4788999999999999998  577788999999999999999974 34 5889999999999


Q ss_pred             ecCccCccc-hHHHhcCCCCcEEEccCCcCee
Q 037844           94 IKCNFCSRI-TFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        94 ~~n~~~~~~-p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++|++.... ...+..+++|+++++++|++++
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            999998432 2567889999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-16  Score=95.37  Aligned_cols=107  Identities=17%  Similarity=0.056  Sum_probs=87.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      ..+++|++++|+++ .+  +..+..+++|+.|++++|.++  .++ .+..+++|+.+++++|+++...+..+..+++|+.
T Consensus        18 ~~lr~L~L~~n~I~-~i--~~~~~~l~~L~~L~Ls~N~i~--~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VI--ENLGATLDQFDAIDFSDNEIR--KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             TSCEEEECTTSCCC-SC--CCGGGGTTCCSEEECCSSCCC--EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCcEEECCCCCCC-cc--CccccccccCCEEECCCCCCC--ccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            46899999999988 55  556677889999999999997  453 4788999999999999998554444567899999


Q ss_pred             EEeecCccCccch--HHHhcCCCCcEEEccCCcCee
Q 037844           91 LAIIKCNFCSRIT--FLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        91 l~l~~n~~~~~~p--~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      |++++|++.. ++  ..+..+++|+++++++|+++.
T Consensus        92 L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          92 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ceeccccccc-cccccccccccccchhhcCCCcccc
Confidence            9999999883 33  467888999999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=5.9e-16  Score=96.01  Aligned_cols=107  Identities=20%  Similarity=0.128  Sum_probs=92.1

Q ss_pred             eEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844           13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA   92 (126)
Q Consensus        13 l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~   92 (126)
                      .++++.++++++ .+  |..+.  +++++|++++|.+++...+..|..+++|+.|++++|.+....+..+..++.|+.|+
T Consensus        10 ~~~v~Cs~~~L~-~i--P~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EI--PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SC--CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcC-cc--CCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            357899999998 66  66654  57999999999997323355678899999999999999988788889999999999


Q ss_pred             eecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +++|++....+..|.++++|++|++++|.|++
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccc
Confidence            99999997667788999999999999999976

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-15  Score=97.70  Aligned_cols=112  Identities=23%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      ...++.+++++|+++...  +..+..++.|+.|++++|.++ ...+..+..+++|+.+++++|++.+..|..|..+++++
T Consensus       128 ~~~L~~l~l~~N~l~~i~--~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         128 LAALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (284)
T ss_dssp             CTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcccchhhhccccccccC--hhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhccccccChhHhhhhhhcc
Confidence            356777888888877544  456667778888888888887 34456677788888888888888877778888888888


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++++++|.+.+..+..+..+++|+++++++|++..
T Consensus       205 ~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccccccccccccccccccccCEEEecCCCCCC
Confidence            88888888887777788888888888888887763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=1.4e-15  Score=100.44  Aligned_cols=115  Identities=23%  Similarity=0.288  Sum_probs=103.7

Q ss_pred             CCCCceEEEEcCC-CCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844            8 KQRNHVIKLDLPS-SCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR   86 (126)
Q Consensus         8 ~~~~~l~~L~ls~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~   86 (126)
                      ...++|++|++++ |.+.+.+  |..+..+++|++|++++|.+.+ ..+..+..+..|+.++++.|.+.+..|..+..++
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~i--P~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hcCcccccccccccccccccc--ccccccccccchhhhccccccc-cccccccchhhhcccccccccccccCchhhccCc
Confidence            3557999999997 8899888  8999999999999999999984 6677788899999999999999988999999999


Q ss_pred             CCcEEEeecCccCccchHHHhcCCCC-cEEEccCCcCeec
Q 037844           87 SLKVLAIIKCNFCSRITFLLRNLTQL-IILHLSQNSFRGR  125 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~~p~~l~~~~~L-~~l~l~~n~i~~~  125 (126)
                      .++.+++++|.+.+.+|..+..+..+ +.++++.|+++|.
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             ccceeecccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999888876 8999999998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.5e-15  Score=94.79  Aligned_cols=64  Identities=17%  Similarity=0.075  Sum_probs=40.2

Q ss_pred             hCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           59 INLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        59 ~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      ..++.++.+++++|++++..+..+..+++|+.|++++|+++ .+|+.+..+++|+.+++++|++.
T Consensus       145 ~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            34556666666666665544455566666677777766666 56666666666777777766653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=2.1e-14  Score=83.25  Aligned_cols=102  Identities=23%  Similarity=0.194  Sum_probs=83.3

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLR   86 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~   86 (126)
                      ....++++|++++|+++ .+  |+.+..+++|+.|++++|.++  .++ .++.+++|+++++++|++.+.. ...+..++
T Consensus        17 ~~l~~L~~L~ls~N~l~-~l--p~~~~~l~~L~~L~l~~N~i~--~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-AL--PPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CC--CGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             ccCCCCCEEECCCCccC-cc--hhhhhhhhccccccccccccc--ccC-ccccccccCeEECCCCccCCCCCchhhcCCC
Confidence            44578999999999998 66  778899999999999999998  355 4889999999999999997432 35678899


Q ss_pred             CCcEEEeecCccCcc---chHHHhcCCCCcEE
Q 037844           87 SLKVLAIIKCNFCSR---ITFLLRNLTQLIIL  115 (126)
Q Consensus        87 ~L~~l~l~~n~~~~~---~p~~l~~~~~L~~l  115 (126)
                      +|+.+++++|+++..   .......+|+|+.+
T Consensus        91 ~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999998742   23345567888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=92.48  Aligned_cols=112  Identities=25%  Similarity=0.127  Sum_probs=96.9

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS   87 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~   87 (126)
                      ...++|++|++++|++.. .  +..+..+++|++|++++|.+. ...+..+..+.+++.+++.+|.+....+..+..++.
T Consensus        74 ~~l~~L~~L~Ls~N~l~~-~--~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~  149 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQS-L--PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (266)
T ss_dssp             SCCTTCCEEECCSSCCSS-C--CCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccccccccccccccc-c--ccccccccccccccccccccc-eeeccccccccccccccccccccceecccccccccc
Confidence            456889999999999984 4  567888999999999999987 355566778899999999999998665666778999


Q ss_pred             CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           88 LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      ++.+++++|++++..+..+..+++|++|++++|+++
T Consensus       150 l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             chhcccccccccccCccccccccccceeecccCCCc
Confidence            999999999999777778899999999999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3e-14  Score=92.82  Aligned_cols=114  Identities=21%  Similarity=0.136  Sum_probs=98.0

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL   88 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L   88 (126)
                      ..+++++|++++|.+....  +..+.....|+.+++.+|.+++ ..+..+..+++++.+++++|.+.+..+..+..+++|
T Consensus       103 ~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccccCCEEecCCccccccc--ccccchhcccchhhhccccccc-cChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            3478999999999987555  5667778899999999999983 445667788999999999999987767788899999


Q ss_pred             cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844           89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR  125 (126)
Q Consensus        89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~  125 (126)
                      +.+++++|.+.+..|..|..+++|+++++++|++.+.
T Consensus       180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             chhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence            9999999999988899999999999999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.5e-14  Score=84.89  Aligned_cols=105  Identities=17%  Similarity=0.051  Sum_probs=83.9

Q ss_pred             EEEEcCCCCcccccCCCccccccccCceeEeccCc-ccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844           14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNK-FSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA   92 (126)
Q Consensus        14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~   92 (126)
                      +.++.+++.+. ..  |..+..++++++|++++|. ++ ...+..|..+++|+.+++++|+++...+..|..+++|+.|+
T Consensus        11 ~~l~c~~~~~~-~~--p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          11 SGLRCTRDGAL-DS--LHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SCEECCSSCCC-TT--TTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CeEEecCCCCc-cC--cccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            45778888777 44  6778888999999998664 76 24455688899999999999999877677888999999999


Q ss_pred             eecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844           93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~  123 (126)
                      +++|+++ .+|.......+|+.|++++|++.
T Consensus        87 Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999 55655445567999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-13  Score=82.77  Aligned_cols=101  Identities=21%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGL-PVSTKYLRS   87 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~   87 (126)
                      .++++.|++++|++. .+  + .+..+++|++|++++|.++  .+++ .+..+++++.+++++|.+.... ...+..+++
T Consensus        40 l~~L~~L~Ls~N~i~-~l--~-~~~~l~~L~~L~ls~N~i~--~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~  113 (162)
T d1a9na_          40 LDQFDAIDFSDNEIR-KL--D-GFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS  113 (162)
T ss_dssp             TTCCSEEECCSSCCC-EE--C-CCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTT
T ss_pred             cccCCEEECCCCCCC-cc--C-CcccCcchhhhhccccccc--CCCccccccccccccceeccccccccccccccccccc
Confidence            478999999999998 55  3 4788999999999999998  3444 4567999999999999997431 245778999


Q ss_pred             CcEEEeecCccCccch----HHHhcCCCCcEEEc
Q 037844           88 LKVLAIIKCNFCSRIT----FLLRNLTQLIILHL  117 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p----~~l~~~~~L~~l~l  117 (126)
                      |+.+++.+|+++ ..|    ..+..+++|++||-
T Consensus       114 L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         114 LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             cchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            999999999997 444    35788999999983

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.7e-12  Score=80.59  Aligned_cols=106  Identities=25%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh---------------------hhhCCCCCCEE
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI---------------------KIINLSRLSYL   67 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------------------~~~~l~~L~~l   67 (126)
                      ..+++++|++++|++++..    .+..+++|++|++++|.+.  .++.                     .+..+++|+.+
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~----~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCC--CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cCCCcCcCccccccccCcc----cccCCcccccccccccccc--cccccccccccccccccccccccccccchhhhhHHh
Confidence            3456777777777666332    2556666666666666554  1221                     13334444444


Q ss_pred             EcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           68 NLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        68 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      ++++|.+..  .+.+..+++++.+++.+|.+++ ++ .++++++|++|++++|++++
T Consensus       134 ~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         134 ELSSNTISD--ISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhcc--cccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC
Confidence            444444431  1224445555555555555552 22 35667777777777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=2.4e-12  Score=79.85  Aligned_cols=95  Identities=27%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++++.|+++++.... .   ..+..+++|+++++++|.+.  .+ +.+..+++++.+++.+|.+++.  +.+..+++|+
T Consensus       105 l~~L~~L~l~~~~~~~-~---~~~~~l~~L~~L~l~~n~l~--~~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~  175 (199)
T d2omxa2         105 LTNLTGLTLFNNQITD-I---DPLKNLTNLNRLELSSNTIS--DI-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLE  175 (199)
T ss_dssp             CTTCSEEECCSSCCCC-C---GGGTTCTTCSEEECCSSCCC--CC-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             cccccccccccccccc-c---cccchhhhhHHhhhhhhhhc--cc-ccccccccccccccccccccCC--ccccCCCCCC
Confidence            3456666666665542 2   34567788899999998886  34 3578899999999999999743  3488999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEE
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIIL  115 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l  115 (126)
                      .|++++|+++ .++ .+..+++|+.|
T Consensus       176 ~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             EEECCCCCCC-CCc-cccCCCCCCcC
Confidence            9999999998 454 57888988875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=7.5e-13  Score=86.74  Aligned_cols=109  Identities=19%  Similarity=0.123  Sum_probs=77.5

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++++.|++++|......  +..+..++.+++|++++|.+.+ ..+..+..+++|+++++++|.++ .+|..+..+++|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             CCccCEEECCCCcCCCCC--hhHhhccccccccccccccccc-cccccccccccceeeeccccccc-ccccccccccCCC
Confidence            456777788877777665  5667777778888888887762 44566677788888888888776 4566777788888


Q ss_pred             EEEeecCccCccchH-------HHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRITF-------LLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~-------~l~~~~~L~~l~l~~n~i~  123 (126)
                      +|++++|+++. ++.       ......+|+.+++++|+++
T Consensus       246 ~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         246 VVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCc
Confidence            88888887773 322       2234567888888888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=8.3e-13  Score=86.53  Aligned_cols=108  Identities=18%  Similarity=0.134  Sum_probs=92.3

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++++.+++++|.+. .+  |..  .+++++.|++++|... ...+..+..++.++.+++++|.+.+..+..+..+++|+
T Consensus       149 l~~L~~l~l~~n~l~-~l--~~~--~~~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TI--PQG--LPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             CTTCCEEECCSSCCC-SC--CSS--CCTTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             ccccCccccccCCcc-cc--Ccc--cCCccCEEECCCCcCC-CCChhHhhccccccccccccccccccccccccccccce
Confidence            357899999999887 44  443  3578999999999987 35677788899999999999999877778888999999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|+++ .+|..+..+++|++|++++|+|+.
T Consensus       223 ~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         223 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             eeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            9999999998 778889999999999999998863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=3.4e-12  Score=79.79  Aligned_cols=107  Identities=30%  Similarity=0.302  Sum_probs=71.8

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCc-----------
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGG-----------   77 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----------   77 (126)
                      ..++|++|++++|.+++ +  + .+..+++|++|++++|.++  .++ .+..+++|+.+++.++.+...           
T Consensus        66 ~l~~L~~L~L~~n~i~~-l--~-~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~  138 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTD-I--K-PLANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLES  138 (210)
T ss_dssp             GCTTCCEEECCSSCCCC-C--G-GGTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCE
T ss_pred             hCCCCCEEeCCCccccC-c--c-ccccCcccccccccccccc--ccc-cccccccccccccccccccccccccccccccc
Confidence            34678888888888774 3  2 3567778888888888876  244 366677777777777665421           


Q ss_pred             ---------CCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           78 ---------LPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        78 ---------~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                               .+..+..++.|+.+++++|++.+ ++ .+..+++|+.|++++|.+++
T Consensus       139 l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC
Confidence                     11223446677777887777773 33 36778888888888887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=9.8e-15  Score=90.98  Aligned_cols=105  Identities=22%  Similarity=0.149  Sum_probs=84.0

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .++++.|++++|.++ .+  + .+..+++|+.|++++|.+.  .++.....++.|+.+++++|.++..  +.+..+++|+
T Consensus        47 L~~L~~L~Ls~n~I~-~i--~-~l~~l~~L~~L~Ls~N~i~--~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KI--S-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             TTTCCEEECSEEEES-CC--C-CHHHHTTCCEEECCEEEEC--SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             ccccceeECcccCCC-Cc--c-cccCCccccChhhcccccc--ccccccccccccccccccccccccc--cccccccccc
Confidence            468899999999888 44  3 4788899999999999987  4555455567899999999988742  3477888999


Q ss_pred             EEEeecCccCccch--HHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRIT--FLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p--~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .|++++|+++. ++  ..+..+++|+.|++++|++.
T Consensus       119 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         119 VLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccchhcc-ccccccccCCCccceeecCCCccc
Confidence            99999999884 33  46788999999999998764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1e-11  Score=77.53  Aligned_cols=102  Identities=28%  Similarity=0.296  Sum_probs=75.4

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      ..+++.|++++|.+.. +   ..+..+++|++|++++|.+++  ++ .++.+++|+++++++|++++ ++ .+..+++|+
T Consensus        45 L~~L~~L~l~~~~i~~-l---~~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-V---QGIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCCC-C---TTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hcCccEEECcCCCCCC-c---hhHhhCCCCCEEeCCCccccC--cc-ccccCccccccccccccccc-cc-ccccccccc
Confidence            3578999999999884 3   247889999999999999983  44 36789999999999999974 33 477888999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                      .+++.+|.+. .++ .+..++.++.++++.|.+
T Consensus       116 ~L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2         116 SLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             EEECTTSCCC-CCG-GGGGCTTCCEEECCSSCC
T ss_pred             cccccccccc-ccc-cccccccccccccccccc
Confidence            9999888765 222 234444444444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=1.5e-11  Score=82.17  Aligned_cols=105  Identities=24%  Similarity=0.278  Sum_probs=52.5

Q ss_pred             CCCceEEEEcCCCCcccccC------------------CCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcc
Q 037844            9 QRNHVIKLDLPSSCLQDSIN------------------SSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLF   70 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~   70 (126)
                      ..+++++|+++++.+.+..+                  ....+..++.++.+++++|.+++  ++ .+..+++|+.++++
T Consensus       261 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~--l~-~l~~l~~L~~L~L~  337 (384)
T d2omza2         261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--IS-PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC--CG-GGGGCTTCCEEECC
T ss_pred             ccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC--Cc-ccccCCCCCEEECC
Confidence            34667777777776653210                  01123334445555555555542  22 24455555555555


Q ss_pred             cCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844           71 YSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQN  120 (126)
Q Consensus        71 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n  120 (126)
                      +|++++ + +.+..+++|++|++++|++++. ++ +.++++|+.|++++|
T Consensus       338 ~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l-~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNKVSD-V-SSLANLTNINWLSAGHNQISDL-TP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCC-C-GGGGGCTTCCEEECCSSCCCBC-GG-GTTCTTCSEEECCCE
T ss_pred             CCCCCC-C-hhHcCCCCCCEEECCCCcCCCC-hh-hccCCCCCEeeCCCC
Confidence            555542 1 2355555555555555555532 22 455555555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=2.3e-11  Score=81.26  Aligned_cols=109  Identities=25%  Similarity=0.310  Sum_probs=83.7

Q ss_pred             CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcc-------------------hhhhhhCCCCCCEEE
Q 037844            8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFE-------------------ILIKIINLSRLSYLN   68 (126)
Q Consensus         8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------~~~~~~~l~~L~~l~   68 (126)
                      ...++++.|++++|.+++..    .+..+++|++++++++.+.+..                   ....+..++.++.++
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~  313 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT  313 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             hcccccchhccccCccCCCC----cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEE
Confidence            44578999999999988542    4677888999999888765210                   012355567888888


Q ss_pred             cccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           69 LFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        69 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +++|++++. + .+..+++|+.|++++|+++ .++ .+..+++|++|++++|++++
T Consensus       314 ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         314 LYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCC
Confidence            888888753 2 3778999999999999988 455 58889999999999999886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=72.71  Aligned_cols=87  Identities=23%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             CCCceEEEEcCCCC-cccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844            9 QRNHVIKLDLPSSC-LQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS   87 (126)
Q Consensus         9 ~~~~l~~L~ls~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~   87 (126)
                      ..+++++|++++|+ ++...  +..|..+++|+.|++++|.++ ...+..|..+++|+++++++|+++ .+|........
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~  104 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS  104 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC
T ss_pred             CccccCeeecCCCccccccC--chhhccccccCcceeeccccC-CcccccccccccccceeccCCCCc-ccChhhhcccc
Confidence            34688999998764 77544  567889999999999999998 345677889999999999999998 45554444557


Q ss_pred             CcEEEeecCccC
Q 037844           88 LKVLAIIKCNFC   99 (126)
Q Consensus        88 L~~l~l~~n~~~   99 (126)
                      ++.+++++|++.
T Consensus       105 l~~L~L~~Np~~  116 (156)
T d2ifga3         105 LQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccccccCCCccc
Confidence            999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=1.4e-10  Score=72.96  Aligned_cols=63  Identities=25%  Similarity=0.329  Sum_probs=43.0

Q ss_pred             hhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           58 IINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        58 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +..+++++.++++++.+.+.  ..+..+++|+.+++++|+++ .++ .+..+++|++|++++|++++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             hccccccccccccccccccc--hhhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCCC
Confidence            44566777777777766532  23667777888888887776 343 36677788888888877764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=1.6e-13  Score=85.41  Aligned_cols=102  Identities=16%  Similarity=0.096  Sum_probs=80.6

Q ss_pred             CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844            9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLRS   87 (126)
Q Consensus         9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~   87 (126)
                      ..++|++|++++|.++ .+  +.....++.|++|++++|.++  .+ +.+..+++|+.+++++|+++... ...+..+++
T Consensus        68 ~l~~L~~L~Ls~N~i~-~i--~~~~~~~~~L~~L~l~~N~i~--~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          68 GMENLRILSLGRNLIK-KI--ENLDAVADTLEELWISYNQIA--SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             HHTTCCEEECCEEEEC-SC--SSHHHHHHHCCEEECSEEECC--CH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             CCccccChhhcccccc-cc--ccccccccccccccccccccc--cc-ccccccccccccccccchhccccccccccCCCc
Confidence            3468999999999988 55  555555678999999999998  34 34778999999999999997432 145788999


Q ss_pred             CcEEEeecCccCccchH----------HHhcCCCCcEEE
Q 037844           88 LKVLAIIKCNFCSRITF----------LLRNLTQLIILH  116 (126)
Q Consensus        88 L~~l~l~~n~~~~~~p~----------~l~~~~~L~~l~  116 (126)
                      |+.|++++|++....+.          .+..+++|+.||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99999999998643332          267889999987

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.9e-10  Score=72.25  Aligned_cols=98  Identities=21%  Similarity=0.252  Sum_probs=74.4

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV   90 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~   90 (126)
                      +.++.+.++.+.+...    ..+..+++|++|++++|.+.+  . ..+..+++|+.+++++|++++ + ..+..+++|++
T Consensus       129 ~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~--~-~~l~~l~~L~~L~Ls~n~l~~-l-~~l~~l~~L~~  199 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQVSD--L-TPLANLSKLTTLKADDNKISD-I-SPLASLPNLIE  199 (227)
T ss_dssp             TTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCCE
T ss_pred             cchhhhhchhhhhchh----hhhcccccccccccccccccc--c-hhhcccccceecccCCCccCC-C-hhhcCCCCCCE
Confidence            3445555555544422    235667889999999998862  3 337889999999999999974 3 34788999999


Q ss_pred             EEeecCccCccchHHHhcCCCCcEEEccC
Q 037844           91 LAIIKCNFCSRITFLLRNLTQLIILHLSQ  119 (126)
Q Consensus        91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~  119 (126)
                      |++++|+++ .+++ +..+++|+.|++++
T Consensus       200 L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         200 VHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             EECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             EECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            999999998 4553 78999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-09  Score=68.94  Aligned_cols=86  Identities=17%  Similarity=0.081  Sum_probs=58.8

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcch-hhhhhCCCCCCEEEccc-CcCcCcCCccccCCCCC
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEI-LIKIINLSRLSYLNLFY-SSLSGGLPVSTKYLRSL   88 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L   88 (126)
                      +++++|++++|.++...  +..|..+++|++|++++|.+.. .+ +..+..++.++.+.+.. +.+....+..+..++.|
T Consensus        29 ~~l~~L~Ls~n~i~~l~--~~~f~~l~~L~~L~ls~n~~~~-~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCCCEEC--TTTTTTCTTCCEEEEESCTTCC-EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCCEEECcCCcCCccC--hhHhhccchhhhhhhccccccc-eeeccccccccccccccccccccccccccccccccccc
Confidence            46788888888877433  3457778888888888887752 23 33456677777777653 45554555666777888


Q ss_pred             cEEEeecCccC
Q 037844           89 KVLAIIKCNFC   99 (126)
Q Consensus        89 ~~l~l~~n~~~   99 (126)
                      +.+++.+|.+.
T Consensus       106 ~~l~l~~~~l~  116 (242)
T d1xwdc1         106 QYLLISNTGIK  116 (242)
T ss_dssp             CEEEEESCCCC
T ss_pred             cccccchhhhc
Confidence            88888777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.4e-10  Score=78.67  Aligned_cols=112  Identities=21%  Similarity=0.153  Sum_probs=83.2

Q ss_pred             CceEEEEcCCCCcccc-cCCCccccccccCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCcC----Cccc
Q 037844           11 NHVIKLDLPSSCLQDS-INSSSGLFKLIHLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGGL----PVST   82 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~   82 (126)
                      .+|++|+++++++++. +  ...+..+++++.|++++|.++..   .+...+..+++|++|++++|.++...    ...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~--~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARW--AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHH--HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHH--HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            4689999999999853 1  13356678999999999998621   23445678899999999999886322    1222


Q ss_pred             c-CCCCCcEEEeecCccCcc----chHHHhcCCCCcEEEccCCcCee
Q 037844           83 K-YLRSLKVLAIIKCNFCSR----ITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        83 ~-~l~~L~~l~l~~n~~~~~----~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      . ....|+.|++++|.+++.    ++..+..+++|++|++++|.++.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            2 234799999999999754    34556778999999999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.4e-09  Score=67.50  Aligned_cols=104  Identities=17%  Similarity=0.094  Sum_probs=82.4

Q ss_pred             EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcC-CccccCCCCCcEE
Q 037844           14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGL-PVSTKYLRSLKVL   91 (126)
Q Consensus        14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l   91 (126)
                      +.++.++..++ .+  |..+.  +++++|++++|.++  .+|. .|..+++|+++++++|.+.+.. +..|..++.++.+
T Consensus        11 ~~i~c~~~~l~-~i--P~~l~--~~l~~L~Ls~n~i~--~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVT-EI--PSDLP--RNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCS-SC--CSCSC--SCCSEEEEESCCCC--EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCCC-Cc--CCCCC--CCCCEEECcCCcCC--ccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            46777787777 56  65553  57999999999997  4544 5788999999999999887544 3457789999999


Q ss_pred             Eeec-CccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           92 AIIK-CNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        92 ~l~~-n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .+.. |.+....+..+..+++|+++++.+|.+..
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccccccccccchhhhcc
Confidence            8764 67776777778999999999999998753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.90  E-value=4.2e-09  Score=69.14  Aligned_cols=96  Identities=23%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCC-CCCc
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYL-RSLK   89 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l-~~L~   89 (126)
                      .++++|+++++.++ .+  |+.   .++|++|++++|.++  .+|..   +.+|+.|++.+|+++ .++    .+ +.|+
T Consensus        38 ~~l~~LdLs~~~L~-~l--p~~---~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~l~~n~l~-~l~----~lp~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SL--PEL---PPHLESLVASCNSLT--ELPEL---PQSLKSLLVDNNNLK-ALS----DLPPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCS-CC--CSC---CTTCSEEECCSSCCS--SCCCC---CTTCCEEECCSSCCS-CCC----SCCTTCC
T ss_pred             cCCCEEEeCCCCCC-CC--CCC---CCCCCEEECCCCCCc--ccccc---hhhhhhhhhhhcccc-hhh----hhccccc
Confidence            36789999999988 56  643   468999999999997  46654   467999999999886 333    23 4699


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      +|++++|.+. .+|. ++.++.|++++++++.+.+
T Consensus       102 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             cccccccccc-cccc-hhhhccceeeccccccccc
Confidence            9999999988 6664 5678899999999887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.77  E-value=4.6e-09  Score=69.52  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=75.6

Q ss_pred             CceEEEEcCCCCcccc-----cCCCccccccccCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCcCCccc
Q 037844           11 NHVIKLDLPSSCLQDS-----INSSSGLFKLIHLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGGLPVST   82 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~   82 (126)
                      +.+++|++++|.+...     +  ...+..+++|+.|++++|.+...   .+...+..++.|+++++++|.+++.....+
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l--~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLL--LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHH--HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhcccccccccccccccccch--hhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            5788888888887642     2  23456677888899888887511   133455677888899998888874322222


Q ss_pred             ----cC--CCCCcEEEeecCccCccc----hHHHh-cCCCCcEEEccCCcCee
Q 037844           83 ----KY--LRSLKVLAIIKCNFCSRI----TFLLR-NLTQLIILHLSQNSFRG  124 (126)
Q Consensus        83 ----~~--l~~L~~l~l~~n~~~~~~----p~~l~-~~~~L~~l~l~~n~i~~  124 (126)
                          ..  .+.|+.|++++|.++...    ...+. +.++|+++++++|.++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence                22  356888999988887533    23332 56788999999888754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.3e-08  Score=65.97  Aligned_cols=84  Identities=17%  Similarity=0.111  Sum_probs=51.2

Q ss_pred             ccCceeEeccCc--ccCcchhhhhhCCCCCCEEEcccC-cCcCcCCccccCCCCCcEEEeecC-ccCccchHHHhcCCCC
Q 037844           37 IHLKWLILLFNK--FSGFEILIKIINLSRLSYLNLFYS-SLSGGLPVSTKYLRSLKVLAIIKC-NFCSRITFLLRNLTQL  112 (126)
Q Consensus        37 ~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~p~~l~~~~~L  112 (126)
                      +.|+.|+++++.  +++..+......+++|++++++++ .+++.....+.+++.|++|++++| .+++.....++.+++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            345555555432  221112222345677778887764 455555566677777888888775 4665555566777788


Q ss_pred             cEEEccCC
Q 037844          113 IILHLSQN  120 (126)
Q Consensus       113 ~~l~l~~n  120 (126)
                      +.+++.++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            88887765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.4e-09  Score=64.09  Aligned_cols=82  Identities=16%  Similarity=0.107  Sum_probs=47.4

Q ss_pred             ccccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccch-------HHH
Q 037844           35 KLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRIT-------FLL  106 (126)
Q Consensus        35 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p-------~~l  106 (126)
                      .++.|++|++++|.++.- .++..+..+++|+.+++++|.++....-.......++.+++.+|++.....       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            456677777777777521 123345567777777777777763322122233456777777777764322       234


Q ss_pred             hcCCCCcEEE
Q 037844          107 RNLTQLIILH  116 (126)
Q Consensus       107 ~~~~~L~~l~  116 (126)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5667777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.4e-08  Score=63.90  Aligned_cols=108  Identities=22%  Similarity=0.139  Sum_probs=72.3

Q ss_pred             CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC-cCcCcC-CccccCCCCC
Q 037844           11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS-SLSGGL-PVSTKYLRSL   88 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~-~~~~~~l~~L   88 (126)
                      .++++|+++++.+..... ...+..+++|++|+++++.+. ...+..++.+++|++++++++ .+++.. ..-...++.|
T Consensus        46 ~~L~~LdLs~~~i~~~~l-~~l~~~c~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTL-HGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHH-HHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHH-HHHHHhCCCcccccccccCCC-cHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            578889998887764320 233566788999999988876 356677888888999998875 454221 1223467889


Q ss_pred             cEEEeecCc-cCcc-chHHHhc-CCCCcEEEccCC
Q 037844           89 KVLAIIKCN-FCSR-ITFLLRN-LTQLIILHLSQN  120 (126)
Q Consensus        89 ~~l~l~~n~-~~~~-~p~~l~~-~~~L~~l~l~~n  120 (126)
                      +.|++++|. +++. +...+.. .+.|+.++++++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccccccccccccccchhhhcccccccchhhhccc
Confidence            999998864 4432 2233433 467899988764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.3e-08  Score=60.76  Aligned_cols=105  Identities=20%  Similarity=0.007  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC--CccccCCCCCc
Q 037844           12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL--PVSTKYLRSLK   89 (126)
Q Consensus        12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~l~~L~   89 (126)
                      ..+.|++++....      +.+..+..+..+....+...  .++.....++.|+++++++|+++...  +..+..+++|+
T Consensus        23 ~~~~Ldls~l~~~------~~l~~~~~~~~l~~~~~~~~--~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~   94 (162)
T d1koha1          23 SQQALDLKGLRSD------PDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK   94 (162)
T ss_dssp             SSCCBCCCCCSSC------TTTTTTTCCCCTTSHHHHHH--HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCC
T ss_pred             hhCeeecccCCCC------chhhhccchhhcchhhhHhh--hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccc
Confidence            3455666665422      22333334444444444433  34444456899999999999998532  34456789999


Q ss_pred             EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844           90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG  124 (126)
Q Consensus        90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~  124 (126)
                      .|++++|.+...-+-......+|+.+++.+|+++.
T Consensus        95 ~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          95 ILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             ccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            99999999984333233445679999999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.52  E-value=4.4e-08  Score=64.67  Aligned_cols=114  Identities=15%  Similarity=0.097  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCCcccccCC--CccccccccCceeEeccCcccCc----chhhhhhCCCCCCEEEcccCcCcCc----CCc
Q 037844           11 NHVIKLDLPSSCLQDSINS--SSGLFKLIHLKWLILLFNKFSGF----EILIKIINLSRLSYLNLFYSSLSGG----LPV   80 (126)
Q Consensus        11 ~~l~~L~ls~n~l~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~----~~~   80 (126)
                      +.++.+.+++|.+......  ...+...+.++.|+++.|.+...    .+...+..+++|+.+++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            4556666666655422100  12234456788888888877511    1223355677888888888877532    223


Q ss_pred             cccCCCCCcEEEeecCccCccchHH----Hhc--CCCCcEEEccCCcCee
Q 037844           81 STKYLRSLKVLAIIKCNFCSRITFL----LRN--LTQLIILHLSQNSFRG  124 (126)
Q Consensus        81 ~~~~l~~L~~l~l~~n~~~~~~p~~----l~~--~~~L~~l~l~~n~i~~  124 (126)
                      .+..++.|+.|++++|.+++.....    +..  ..+|+.|++++|.|+.
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            4556778888888888887543332    332  3568888888888754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.51  E-value=4.1e-07  Score=59.37  Aligned_cols=101  Identities=21%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844           10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK   89 (126)
Q Consensus        10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~   89 (126)
                      .+++++|++++|+++ .+  |..   +.+|+.|++++|.++  .++. +  .+.|+++++++|.+. .+|. ++.++.|+
T Consensus        57 ~~~L~~L~Ls~N~l~-~l--p~~---~~~L~~L~l~~n~l~--~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~  123 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-EL--PEL---PQSLKSLLVDNNNLK--ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLK  123 (353)
T ss_dssp             CTTCSEEECCSSCCS-SC--CCC---CTTCCEEECCSSCCS--CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCC
T ss_pred             CCCCCEEECCCCCCc-cc--ccc---hhhhhhhhhhhcccc--hhhh-h--ccccccccccccccc-cccc-hhhhccce
Confidence            468999999999998 66  654   357899999999887  3443 1  256999999999987 4554 67889999


Q ss_pred             EEEeecCccCccch------------------HHHhcCCCCcEEEccCCcCe
Q 037844           90 VLAIIKCNFCSRIT------------------FLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus        90 ~l~l~~n~~~~~~p------------------~~l~~~~~L~~l~l~~n~i~  123 (126)
                      .+++.++.+.....                  ..+..++.++.+++..|.+.
T Consensus       124 ~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         124 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             eeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            99999887763211                  12334556667776666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4e-08  Score=66.29  Aligned_cols=39  Identities=23%  Similarity=0.127  Sum_probs=17.5

Q ss_pred             CCCCEEEcccCcCcCc----CCccccCCCCCcEEEeecCccCc
Q 037844           62 SRLSYLNLFYSSLSGG----LPVSTKYLRSLKVLAIIKCNFCS  100 (126)
Q Consensus        62 ~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~  100 (126)
                      +.|++|++++|.+++.    +...+...++|++|++++|.++.
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            3455555555555421    11222334455555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.30  E-value=5.2e-07  Score=53.89  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=78.4

Q ss_pred             CCceEEEEcCCC-Ccccc----cCCCccccccccCceeEeccCcccC---cchhhhhhCCCCCCEEEcccCcCcCcCC--
Q 037844           10 RNHVIKLDLPSS-CLQDS----INSSSGLFKLIHLKWLILLFNKFSG---FEILIKIINLSRLSYLNLFYSSLSGGLP--   79 (126)
Q Consensus        10 ~~~l~~L~ls~n-~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~l~l~~~~~~~~~~--   79 (126)
                      .+++++|+++++ .+...    +  ...+...+.|++|++++|.+..   ..+...+...+.|+.+++++|.++....  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l--~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSL--IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH--HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHH--HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            378999999974 46532    2  2334556789999999998862   1233445567899999999999874322  


Q ss_pred             --ccccCCCCCcEEEeecCccCc-------cchHHHhcCCCCcEEEccCCcC
Q 037844           80 --VSTKYLRSLKVLAIIKCNFCS-------RITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        80 --~~~~~l~~L~~l~l~~n~~~~-------~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                        ..+...++|+.|++++|....       .+...+...++|+.++++++..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence              335566889999999886542       2345566778999999987643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=9.6e-06  Score=48.18  Aligned_cols=89  Identities=11%  Similarity=0.019  Sum_probs=63.9

Q ss_pred             ccccCceeEeccC-cccCcc---hhhhhhCCCCCCEEEcccCcCcCcCC----ccccCCCCCcEEEeecCccCccch---
Q 037844           35 KLIHLKWLILLFN-KFSGFE---ILIKIINLSRLSYLNLFYSSLSGGLP----VSTKYLRSLKVLAIIKCNFCSRIT---  103 (126)
Q Consensus        35 ~l~~L~~L~l~~n-~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~l~~L~~l~l~~n~~~~~~p---  103 (126)
                      +.+.|++|+++++ .++...   +...+...+.|+.+++++|.++....    ..+...+.|+.|++++|.++....   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999974 454211   23345567889999999999874322    234456889999999999986433   


Q ss_pred             -HHHhcCCCCcEEEccCCcCe
Q 037844          104 -FLLRNLTQLIILHLSQNSFR  123 (126)
Q Consensus       104 -~~l~~~~~L~~l~l~~n~i~  123 (126)
                       ..+...++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence             34556688999999988654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.87  E-value=5.7e-06  Score=49.03  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=77.2

Q ss_pred             CCceEEEEcCC-CCcccc----cCCCccccccccCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCcC---
Q 037844           10 RNHVIKLDLPS-SCLQDS----INSSSGLFKLIHLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGGL---   78 (126)
Q Consensus        10 ~~~l~~L~ls~-n~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~---   78 (126)
                      .+.+++|++++ +.++..    +  -..+...++|++|++++|.+...   .+...+...+.++.+++..+.++...   
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l--~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKAC--AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHH--HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHH--HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            37899999998 456532    2  23445678899999999988621   12334556789999999999886432   


Q ss_pred             -CccccCCCCCcEEEe--ecCccCc----cchHHHhcCCCCcEEEccCCcC
Q 037844           79 -PVSTKYLRSLKVLAI--IKCNFCS----RITFLLRNLTQLIILHLSQNSF  122 (126)
Q Consensus        79 -~~~~~~l~~L~~l~l--~~n~~~~----~~p~~l~~~~~L~~l~l~~n~i  122 (126)
                       ...+...+.++.+++  +.|.+..    .+...+...++|+.|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             234556788887655  4667764    3445667889999999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.70  E-value=0.0011  Score=38.81  Aligned_cols=90  Identities=12%  Similarity=-0.029  Sum_probs=61.9

Q ss_pred             cccccCceeEecc-CcccCcc---hhhhhhCCCCCCEEEcccCcCcCcCC----ccccCCCCCcEEEeecCccCccch--
Q 037844           34 FKLIHLKWLILLF-NKFSGFE---ILIKIINLSRLSYLNLFYSSLSGGLP----VSTKYLRSLKVLAIIKCNFCSRIT--  103 (126)
Q Consensus        34 ~~l~~L~~L~l~~-n~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~l~~L~~l~l~~n~~~~~~p--  103 (126)
                      ...+.|++|.+.+ +.++...   +-..+...++|+.|++++|.++....    ..+...++++.++++.|.+.....  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4457899999997 4564111   23344578999999999998874322    234456899999999999875433  


Q ss_pred             --HHHhcCCCCcEEEcc--CCcCe
Q 037844          104 --FLLRNLTQLIILHLS--QNSFR  123 (126)
Q Consensus       104 --~~l~~~~~L~~l~l~--~n~i~  123 (126)
                        ..+...++|+.+++.  .|.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhCccccEEeeccCCCcCc
Confidence              445667889876665  55654