Citrus Sinensis ID: 037847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
Protein Sequence
MDAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL
Secondary Structure (PSIPRED)
cccEEEEcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccEEcccEEEEccHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEEEccccccccccccccccEEEEccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEcccccccccccHHHHccccccEEcccccccccccccccccccccccEEEccccccccccccccccEEcccccccHHHHcccccccEEEEEEccHHHHHHHcccccccccEEEEEEEcccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEcccccccccccccccccEEEEEccccEEEEccEEcccccccccccccccccccEEEccccccccEEcccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHcccccccccHHHEEcHcccccHHHHHHEEEEEcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHcccccccEEEEcccccEEcccccccHHEEEEEEccccccEccccccccccEEEEEccccccccccHHHccccccEEEEEcccccHHcccccccccccccEEEccccccccccHHccccccccEEEEcccccHccccHcHccccccccEEEEcccccccccccHccccccccccccHHHHHccccccEEEEEcccccccccccccccccccEEEEEEcccccccccccHcccccHHHHHHcccccccccEEEEcccccccccccccccccEEEEEEcccccccccccccccccEEEEcccccEEEEcHHccccHHHcccccccccccccEEEEcccccHHHccccccccccccEEEEcccccc
Coil and Loop (DISEMBL)
MDAEKLEVYSLAHDKAWELFQEMVERstldshtsiPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTsaskfsgmkEEVFSRLKfsydslstdELRSCLLYCylypedyeipkrELIDYWIsegfvydfddgcDFIDDLLQACLLeeegddhvKMHDMIREMSLWIACTVDKEEQNFLVRAGvklteapkveewegakrisltangigslseiptcprlVTLLldgnrieeiTDGFFQSLSTLRVLSlrgnfppstlpsgisglvslhhldlsstditgLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLcgcgrfgvikgkegnvlcdgAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWvecgtytrppfnVLHLAYMENLQELELEscnleemkiDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSdisevigsehnffprlEYLTMwrgtnlksvypnpqpfpklkkiqAFHCRQL
Flexible Loop (DISEMBL)
MDAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGramksqrkvgdwkrainkmrtsaskfsgmkeEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAgvklteapkveewegakrisltangigslseiptcPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSvypnpqpfpklkkiqAFHCRQL
Low Complexity Region (SEG)
MDAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYdfddgcdfiddLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL
Disordered region (IsUnstruct)
*******VYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAI***************EVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN*********I********
Disordered Region (DISOPRED)
*DAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTS*****GMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSD**********FFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL
Disordered Region (DISEMBL)
MDAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA********DWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKI********
Disordered Region (DISPRO)
***EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	542	2.2.26 [Sep-21-2011]
O64973	889	Disease resistance protei	yes	no	0.946	0.577	0.389	2e-87
Q8RXS5	888	Probable disease resistan	no	no	0.926	0.565	0.382	1e-86
O82484	892	Putative disease resistan	no	no	0.966	0.587	0.366	4e-83
P60838	894	Probable disease resistan	no	no	0.944	0.572	0.393	1e-82
Q9C8T9	898	Putative disease resistan	no	no	0.948	0.572	0.376	1e-82
Q8L3R3	885	Disease resistance protei	no	no	0.933	0.571	0.382	2e-82
Q9FG91	848	Probable disease resistan	no	no	0.968	0.619	0.359	8e-82
Q9C8K0	854	Probable disease resistan	no	no	0.950	0.603	0.359	4e-79
P60839	884	Probable disease resistan	no	no	0.944	0.579	0.383	5e-78
Q9FG90	862	Probable disease resistan	no	no	0.964	0.606	0.358	9e-78

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  323 bits (828), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 216/555 (38%), Positives = 309/555 (55%), Gaps = 42/555 (7%)

Query: 6   LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRK 65
           +EV  L  +++W+LFQ  V ++TL SH  IP LA  +AR+C GLPLAL ++G AM  +R 
Sbjct: 308 MEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRT 367

Query: 66  VGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKR 125
           V +W  AI+ + +SA  FSGM++E+   LK+SYD+L+ + ++SC LYC L+PEDY I K 
Sbjct: 368 VHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLIDKE 427

Query: 126 ELIDYWISEGFV-------YDFDDGCDFIDDLLQACLL--EEEGDDHVKMHDMIREMSLW 176
            L+DYWISEGF+        + + G + I  L++ACLL  EE    +VKMHD++REM+LW
Sbjct: 428 GLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALW 487

Query: 177 IACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLD 236
           I+  + K+++  +VRAGV L E PKV++W   ++ISL  N I  + +   C  L TL L 
Sbjct: 488 ISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQ 547

Query: 237 GNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELK 296
            N + +I+  FF+ +  L VL L  N   + LP  IS L SL + +LS T I  LP  L 
Sbjct: 548 KNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLW 607

Query: 297 ALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLM 356
            L+KL +LNL++   L  I        S L  LR  G         ++  +L D +  L+
Sbjct: 608 TLKKLIHLNLEHMSSLGSILG-----ISNLWNLRTLGL--------RDSRLLLDMS--LV 652

Query: 357 KELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMEN 416
           KEL  L+HL V++    SSL  +  L   +LV   +   V+          VL L  M N
Sbjct: 653 KELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKE--VDFKYLKEESVRVLTLPTMGN 710

Query: 417 LQELELESCNLEEMKIDSTEEVKKLFRNG------FRNLNTVVLRSCRG-KDLTWLVFVQ 469
           L++L ++ C + E+KI+ T       RN       F NL+ V +  C G KDLTWL+F  
Sbjct: 711 LRKLGIKRCGMREIKIERTTSSSS--RNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAP 768

Query: 470 NLKQLNMQGFT--MEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQP 527
           NL  L + GF+  +E+IIS EK  + S  I      F +LE L ++    LK +Y     
Sbjct: 769 NLTFLEV-GFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFELRGLKRIYAKALH 823

Query: 528 FPKLKKIQAFHCRQL 542
           FP LK I    C +L
Sbjct: 824 FPCLKVIHVEKCEKL 838

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  320 bits (821), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 317/560 (56%), Gaps = 58/560 (10%)

Query: 6   LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRK 65
           +EV  LA D AW+LF + V   TL SH  IP +A T+A++C GLPLAL ++G  M  +R 
Sbjct: 306 MEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRT 365

Query: 66  VGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKR 125
           V +W+ AI+ + +SA++FSGM++E+   LK+SYD+L +++L+ C  YC L+PED+ I K 
Sbjct: 366 VQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKN 425

Query: 126 ELIDYWISEGFV-----YDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACT 180
           +L+DYWI EGF+        + G + I  L+++CLL EE  + VKMHD++REM+LWIA  
Sbjct: 426 DLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLLMEENQETVKMHDVVREMALWIASD 485

Query: 181 VDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRI 240
             K+++NF+V+AG++    P++E+W+ A+R+SL  N I S+ + P  P+L+TLLL  N +
Sbjct: 486 FGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFL 545

Query: 241 EEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEK 300
             I+  FF+ +  L VL L  N     LP+ IS  VSL +L LS T I   P  L  L K
Sbjct: 546 GHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRK 605

Query: 301 LRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP-LMKEL 359
           L YLNL+Y   +  I    IS  + L+VLRL   G                 +P ++ EL
Sbjct: 606 LLYLNLEYTRMVESICG--ISGLTSLKVLRLFVSGF--------------PEDPCVLNEL 649

Query: 360 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH-LAYMENLQ 418
             L++L  L+ + G +  +++FL   +L S T+++ +E      P  +V+  +A M++LQ
Sbjct: 650 QLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIE---NLNPQSSVISFVATMDSLQ 706

Query: 419 ELELESCNLEEMKIDSTEEVKKLF----RNGFRNLNTVVLRSC-RGKDLTWLVFVQNLKQ 473
           EL     ++ E+K+   E V  L        F NL+ V L  C R +DLTWL+F  NL  
Sbjct: 707 ELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNL-- 764

Query: 474 LNMQGFTMEEIISVEKLSDISEVIGSE----HNFFP-------RLEYLTMWRGTNLKSVY 522
                 T+  +IS    SD+ EVI  E     N  P       RLE + M     LK ++
Sbjct: 765 ------TVLRVISA---SDLKEVINKEKAEQQNLIPFQELKELRLENVQM-----LKHIH 810

Query: 523 PNPQPFPKLKKIQAFHCRQL 542
             P PFP L+KI    C +L
Sbjct: 811 RGPLPFPCLQKILVNGCSEL 830

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  309 bits (792), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 306/554 (55%), Gaps = 30/554 (5%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           + +EV  L+ + AWELFQE V + +L SH  I ELA+ +A +C GLPLAL ++G  M  +
Sbjct: 303 DPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGK 362

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           R V +W  A++ + + A++FSGM + +   LK+SYD+L+   +RSC  YC LYPEDY I 
Sbjct: 363 RAVQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIK 422

Query: 124 KRELIDYWISEGFV-------YDFDDGCDFIDDLLQACLLEEEGDD--HVKMHDMIREMS 174
           K  LIDYWI EGF+          + G + +  L++ACLL EEG +   VKMHD++REM+
Sbjct: 423 KYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMA 482

Query: 175 LWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLL 234
           LW    + K ++  +V+AG  L + PKVE+W   +R+SL  NGI  +S  P CP L TL 
Sbjct: 483 LWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLF 542

Query: 235 LDGNR-IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ 293
           L  N+ +  I+  FF+ +  L VL L  N     LP  IS LV+L +LDLS T+I GLP 
Sbjct: 543 LQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPA 602

Query: 294 ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAE 353
            L+ L+ L +LNL+    L       I+  SKL  LR  G         +  N++ D   
Sbjct: 603 CLQDLKTLIHLNLECMRRLGS-----IAGISKLSSLRTLGL--------RNSNIMLDVMS 649

Query: 354 PLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY 413
             +KEL  L+HL +L+    S++ +++ +    L++  Q V + C  Y +     L L  
Sbjct: 650 --VKELHLLEHLEILTIDIVSTMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPT 707

Query: 414 MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLK 472
           M++L+ L + +C + E++I+            F NL+ V++  C   KDLTWL+F  N+ 
Sbjct: 708 MDSLRSLTMWNCEISEIEIERLTWNTNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNIT 767

Query: 473 QLNMQGF-TMEEIISVEKLSDISEVIGSE-HNFFP--RLEYLTMWRGTNLKSVYPNPQPF 528
            L ++    ++E+IS  K + ++E    + H   P  +L+ L +     LKS+Y     F
Sbjct: 768 YLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSF 827

Query: 529 PKLKKIQAFHCRQL 542
           P L  I    C +L
Sbjct: 828 PCLSGIYVERCPKL 841

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  308 bits (788), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 304/559 (54%), Gaps = 47/559 (8%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           + +EV  L  ++AWELFQ  V  +TL  H  IPELA  +A +C GLPLAL ++G  M  +
Sbjct: 306 DPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACK 365

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           R V +W+ AI+ + + A++F GM E++   LK+SYD+L+ ++++ C LYC L+PEDY + 
Sbjct: 366 RMVQEWRNAIDVLSSYAAEFPGM-EQILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRME 424

Query: 124 KRELIDYWISEGFVYD-------FDDGCDFIDDLLQACLLEEEG--DDHVKMHDMIREMS 174
           K  LIDYWI EGF+ +          G + I  L++ACLL EE    + VKMHD++REM+
Sbjct: 425 KERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMA 484

Query: 175 LWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLL 234
           LWIA  + + ++  +V+ GV L E PKV+ W   +R+SL  N I  LS  P C  L TL 
Sbjct: 485 LWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLF 544

Query: 235 LDGN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ 293
           L  N  +  I+D FF+ +  L VL L GN     LP+ IS LVSL +LDLS T I  LP 
Sbjct: 545 LQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPV 604

Query: 294 ELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGA 352
            L+ L+KLRYL LDY   L  I     IS   KL++L             +    L    
Sbjct: 605 GLQELKKLRYLRLDYMKRLKSISGISNISSLRKLQLL-------------QSKMSLDMSL 651

Query: 353 EPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA 412
              ++ L  L+ LN+   S  SSL V+K L  P+LV   Q + V  G        VL L 
Sbjct: 652 VEELQLLEHLEVLNI---SIKSSLVVEKLLNAPRLVKCLQ-ILVLRGVQEESS-GVLTLP 706

Query: 413 YMENLQELELESCNLEEMKID-------STEEVKKLFRNGFRNLNTVVLRSCRG-KDLTW 464
            M+NL ++ +  C + E+KI+       S    K  F     NL+TV + SC G KDLTW
Sbjct: 707 DMDNLNKVIIRKCGMCEIKIERKTLSLSSNRSPKTQF---LHNLSTVHISSCDGLKDLTW 763

Query: 465 LVFVQNLKQLN-MQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP 523
           L+F  NL  L  +    +E II+ EK   +S +I      F +LE L +     L+S+Y 
Sbjct: 764 LLFAPNLTSLEVLDSELVEGIINQEKAMTMSGIIP-----FQKLESLRLHNLAMLRSIYW 818

Query: 524 NPQPFPKLKKIQAFHCRQL 542
            P  FP LK I    C +L
Sbjct: 819 QPLSFPCLKTIHITKCPEL 837

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  308 bits (788), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 310/560 (55%), Gaps = 46/560 (8%)

Query: 1   MDAEK-LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA 59
           M  EK +EV  LA + A++LFQ+ V + TL S   I EL+  +A++C GLPLAL +V   
Sbjct: 298 MGVEKPMEVQCLADNDAYDLFQKKVGQITLGSDPEIRELSRVVAKKCCGLPLALNVVSET 357

Query: 60  MKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPED 119
           M  +R V +W+ AI  + + A+KFSGM +++   LK+SYDSL  ++++ CLLYC L+PED
Sbjct: 358 MSCKRTVQEWRHAIYVLNSYAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCALFPED 417

Query: 120 YEIPKRELIDYWI-------SEGFVYDFDDGCDFIDDLLQACLLEEE----GDDHVKMHD 168
            +I K  LI+YWI       SEG     + G + I  L++A LL EE    G + V +HD
Sbjct: 418 AKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDGANIVCLHD 477

Query: 169 MIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCP 228
           ++REM+LWIA  + K+ + F+VRA V L E  KVE W   +R+SL  N I  L     C 
Sbjct: 478 VVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAHLDGRLDCM 537

Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288
            L TLLL    +E+I+  FF S+  L VL L GN+  S LP+GIS LVSL +L+LSST I
Sbjct: 538 ELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGI 597

Query: 289 TGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL 348
             LP+ L+ L+KL +L L+    L  +    ISC   L+VL+L G      +        
Sbjct: 598 RHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGSSYAWDLDT------ 649

Query: 349 CDGAEPLMKELLGLKHLNVLSWSFGS-SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN 407
                  +KEL  L+HL VL+ +    +L   +FL   +L+S  + + +   +      +
Sbjct: 650 -------VKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSS 702

Query: 408 VLHL-AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWL 465
            + L   M+ LQE  +E C+  E+K+             F +L  V L +CR  ++LT+L
Sbjct: 703 RISLPVTMDRLQEFTIEHCHTSEIKMGRI--------CSFSSLIEVNLSNCRRLRELTFL 754

Query: 466 VFVQNLKQLN-MQGFTMEEIISVEKLSDISEVIGSEHNF--FPRLEYLTMWRGTNLKSVY 522
           +F  NLK+L+ +    +E+II+ EK  D     G +     FP+L  L ++    LK++Y
Sbjct: 755 MFAPNLKRLHVVSSNQLEDIINKEKAHD-----GEKSGIVPFPKLNELHLYNLRELKNIY 809

Query: 523 PNPQPFPKLKKIQAFHCRQL 542
            +P PFP L+KI    C  L
Sbjct: 810 WSPLPFPCLEKINVMGCPNL 829

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 207/541 (38%), Positives = 302/541 (55%), Gaps = 35/541 (6%)

Query: 6   LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRK 65
           +E+  L    AW+L ++ V  +TL SH  IP+LA  ++ +C GLPLAL ++G  M  +R 
Sbjct: 308 MEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETMSFKRT 367

Query: 66  VGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKR 125
           + +W+ A  ++ TSA+ FSGM++E+   LK+SYDSL+ ++ +SC LYC L+PED+EI K 
Sbjct: 368 IQEWRHA-TEVLTSATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKE 426

Query: 126 ELIDYWISEGFVYD-------FDDGCDFIDDLLQACLLEEEGDDH--VKMHDMIREMSLW 176
            LI+YWI EGF+ +       F+ G D +  L+++ LL E   D   V MHDM+REM+LW
Sbjct: 427 MLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALW 486

Query: 177 IACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLD 236
           I   + K ++  +V+AG+ L E P+VE W   KR+SL  N    +   P C  L+TL L 
Sbjct: 487 IFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQ 546

Query: 237 GN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL 295
            N ++ +I+  FF+ + +L VL L  N   S LP  IS LVSL +LDLS T I  LP  L
Sbjct: 547 NNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGL 606

Query: 296 KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPL 355
             L KL +L L+    L  I    IS  S L  LRL           ++     D    L
Sbjct: 607 HELRKLVHLKLERTRRLESISG--ISYLSSLRTLRL-----------RDSKTTLDTG--L 651

Query: 356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRP--PFNVLHLAY 413
           MKEL  L+HL +++    S L  + F  YP++    Q +++    + RP     VL L  
Sbjct: 652 MKELQLLEHLELITTDISSGLVGELFC-YPRVGRCIQHIYIR-DHWERPEESVGVLVLPA 709

Query: 414 MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLK 472
           + NL  + + +C + E+ I+ T   K L    F NL+ V +  C G KDLTWL+F  NL 
Sbjct: 710 IHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLI 769

Query: 473 QLNMQGFT-MEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKL 531
            L + G   +E+IIS EK + + E    E   F +LE L +++ + LKS+Y N  PF +L
Sbjct: 770 NLRVWGCKHLEDIISKEKAASVLE---KEILPFQKLECLNLYQLSELKSIYWNALPFQRL 826

Query: 532 K 532
           +
Sbjct: 827 R 827

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  305 bits (780), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 311/557 (55%), Gaps = 32/557 (5%)

Query: 1   MDAEK-LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA 59
           M A+K ++V  L+ D+AWELF+  V    L SH  IP LA  +A +C GLPLAL ++G+A
Sbjct: 297 MKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 356

Query: 60  MKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPED 119
           M  +  V +W+ AIN + +   KF GM+E +   LKFSYDSL   E++ C LYC L+PED
Sbjct: 357 MVCKETVQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPED 416

Query: 120 YEIPKRELIDYWISEGFV----YD---FDDGCDFIDDLLQACLLEE-EGDDHVKMHDMIR 171
           +EI K +LI+YWI EG++    Y+    + G D I  L++A LL E E  D VKMHD+IR
Sbjct: 417 FEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDVIR 476

Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
           EM+LWI      +++   V++G  +   P    WE  +++SL +  +  ++  P CP L 
Sbjct: 477 EMALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSLISTQVEKIACSPNCPNLS 536

Query: 232 TLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGL 291
           TLLL  N++ +I+ GFF  +  L VL L  N+    LP  IS L SL +L+LS T I  L
Sbjct: 537 TLLLPYNKLVDISVGFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLSLTGIKSL 596

Query: 292 PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351
           P  LK L KL YLNL++   L  +   + +    L+VL+L              ++ C  
Sbjct: 597 PVGLKKLRKLIYLNLEFTNVLESLVG-IATTLPNLQVLKLF------------YSLFCVD 643

Query: 352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL 411
            + +M+EL  LKHL +L+ +   ++ +++     +L S  + +   C      P  +L+ 
Sbjct: 644 -DIIMEELQRLKHLKILTATIEDAMILERVQGVDRLASSIRGL---CLRNMSAPRVILNS 699

Query: 412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRN----GFRNLNTVVLRSCRG-KDLTWLV 466
             +  LQ+L + SCN+ E++ID   + ++  R+    GF+ L ++ +    G +DL+WL+
Sbjct: 700 VALGGLQQLGIVSCNISEIEIDWLSKERRDHRSTSSPGFKQLASITVIGLVGPRDLSWLL 759

Query: 467 FVQNLKQLNMQ-GFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP 525
           F QNLK + +Q   T+EEII+ +K   I++V       F +LE L +++   L  +  N 
Sbjct: 760 FAQNLKDIQVQYSPTIEEIINKQKGMSITKVHRDIVVPFGKLESLHLYQLAELTEICWNY 819

Query: 526 QPFPKLKKIQAFHCRQL 542
           Q  P L++    +C +L
Sbjct: 820 QTLPNLRESYVNYCPKL 836

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score =  296 bits (757), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 305/562 (54%), Gaps = 47/562 (8%)

Query: 5   KLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQR 64
           +++V  L+ D+AWELF+  V+   L SH  IP LA  +A +C GLPLAL ++G AM  + 
Sbjct: 303 QIKVSCLSPDEAWELFRITVDDVILSSHEDIPALARIVAAKCHGLPLALIVIGEAMACKE 362

Query: 65  KVGDWKRAINKMRTSAS-KFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
            + +W  AIN + + A  KF GM+E +   LKFSYDSL   E++ C LYC L+PED+EI 
Sbjct: 363 TIQEWHHAINVLNSPAGHKFPGMEERILLVLKFSYDSLKNGEIKLCFLYCSLFPEDFEIE 422

Query: 124 KRELIDYWISEGFV----YD---FDDGCDFIDDLLQACLLEE-EGDDHVKMHDMIREMSL 175
           K +LI+YWI EG++    Y+    + G D I  L++A LL E E    VKMH +IREM+L
Sbjct: 423 KEKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTTKVKMHYVIREMAL 482

Query: 176 WIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLL 235
           WI     K+++   V++G  +   P    WE  +++SL +  I  +S    C  L TLLL
Sbjct: 483 WINSDFGKQQETICVKSGAHVRMIPNDINWEIVRQVSLISTQIEKISCSSKCSNLSTLLL 542

Query: 236 DGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL 295
             N++  I+ GFF  +  L VL L  N     LP  IS L SL +L+LSST I  LP  +
Sbjct: 543 PYNKLVNISVGFFLFMPKLVVLDLSTNMSLIELPEEISNLCSLQYLNLSSTGIKSLPGGM 602

Query: 296 KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPL 355
           K L KL YLNL++++ L      L+   + L  L+        V+K    NV  D  + L
Sbjct: 603 KKLRKLIYLNLEFSYKL----ESLVGISATLPNLQ--------VLKLFYSNVCVD--DIL 648

Query: 356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYME 415
           M+EL  + HL +L+ +   ++ +++     +L S  + +   C T    P  VL    + 
Sbjct: 649 MEELQHMDHLKILTVTIDDAMILERIQGIDRLASSIRGL---CLTNMSAPRVVLSTTALG 705

Query: 416 NLQELELESCNLEEMKIDSTEEVKK------------LFRNGFRNLNTVVLRSCRG-KDL 462
            LQ+L + SCN+ E+K+D   + ++                GF+ L++V +    G +DL
Sbjct: 706 GLQQLAILSCNISEIKMDWKSKERREVSPMEIHPSTSTSSPGFKQLSSVNIMKLVGPRDL 765

Query: 463 TWLVFVQNLKQLNMQGFT--MEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKS 520
           +WL+F QNLK L++ GF+  +EEII+ EK S I++ I      F +LE L +++   LK 
Sbjct: 766 SWLLFAQNLKSLHV-GFSPEIEEIINKEKGSSITKEIA-----FGKLESLVIYKLPELKE 819

Query: 521 VYPNPQPFPKLKKIQAFHCRQL 542
           +  N +  P  +      C +L
Sbjct: 820 ICWNYRTLPNSRYFDVKDCPKL 841

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  292 bits (747), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 213/555 (38%), Positives = 300/555 (54%), Gaps = 43/555 (7%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           + +EV  L  D AW+LF++ V   TL SH  IPE+A  +A+ C GLPLAL ++G  M  +
Sbjct: 305 DPMEVRCLGADDAWDLFKKKVGDITLSSHPDIPEIARKVAQACCGLPLALNVIGETMACK 364

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           +   +W RA++   T A+ F  +KE +   LK+SYD+L ++ +++C LYC L+PED  I 
Sbjct: 365 KTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPEDDLIE 424

Query: 124 KRELIDYWISEGFVYDFD--------DGCDFIDDLLQACLLEEEG----DDHVKMHDMIR 171
           K  LIDYWI EGF+ D D        +G + +  L+ A LL E G      +VKMHD++R
Sbjct: 425 KERLIDYWICEGFI-DGDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSYVKMHDVVR 483

Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
           EM+LWIA  + K + N +VRAG +L E PKV++W+   R+SL  N I  +   P CP+L 
Sbjct: 484 EMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLT 543

Query: 232 TLLLDGNR-IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG 290
           TL L  NR +  I+  FF+S+  L VL L  N   S LP  IS LVSL +LDLS + I  
Sbjct: 544 TLFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGR 603

Query: 291 LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD 350
           LP  L  L+KL +LNL+    L  +    I   S L+ +RL     +  I   E     +
Sbjct: 604 LPVGLLKLKKLMHLNLESMLCLESVSG--IDHLSNLKTVRLLNLRMWLTISLLEELERLE 661

Query: 351 GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH 410
             E L  E++             SS A+++ L   +LV   Q V V+          +L 
Sbjct: 662 NLEVLTIEII-------------SSSALEQLLCSHRLVRCLQKVSVK--YLDEESVRILT 706

Query: 411 LAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQ 469
           L  + +L+E+ +  C + ++ I   E    L    F NL+ V++  C G KDLTWL+F  
Sbjct: 707 LPSIGDLREVFIGGCGMRDIII---ERNTSLTSPCFPNLSKVLITGCNGLKDLTWLLFAP 763

Query: 470 NLKQLNM-QGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPF 528
           NL  LN+     +EEIIS EK S    V       F +LEYL +W    LKS+Y NP PF
Sbjct: 764 NLTHLNVWNSRQIEEIISQEKASTADIVP------FRKLEYLHLWDLPELKSIYWNPLPF 817

Query: 529 PKLKKIQAFH-CRQL 542
           P L +I   + CR+L
Sbjct: 818 PCLNQINVQNKCRKL 832

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis thaliana GN=At5g43740 PE=2 SV=1

 Score =  291 bits (745), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 203/566 (35%), Positives = 304/566 (53%), Gaps = 43/566 (7%)

Query: 1   MDAEK-LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA 59
           M A+K ++V  L+ D+AWELF+  V    L SH  IP LA  +A +C GLPLAL ++G+A
Sbjct: 296 MKADKQIKVACLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 355

Query: 60  MKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPED 119
           M  +  + +W  AIN + ++  +F GM+E +   LKFSYDSL   E++ C LYC L+PED
Sbjct: 356 MSCKETIQEWSHAINVLNSAGHEFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPED 415

Query: 120 YEIPKRELIDYWISEGFVYD--FDDGC-----DFIDDLLQACLLEE-EGDDHVKMHDMIR 171
            EIPK + I+YWI EGF+    ++DG      D I  L++A LL E E  D+VKMHD+IR
Sbjct: 416 SEIPKEKWIEYWICEGFINPNRYEDGGTNHGYDIIGLLVRAHLLIECELTDNVKMHDVIR 475

Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
           EM+LWI     K+++   V++G  +   P    WE  + +S T   I  +S    CP L 
Sbjct: 476 EMALWINSDFGKQQETICVKSGAHVRMIPNDINWEIVRTMSFTCTQIKKISCRSKCPNLS 535

Query: 232 TLLLDGNR-IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG 290
           TLL+  NR + +I++ FF+ +  L VL L  N     LP  IS L SL +L++S T I  
Sbjct: 536 TLLILDNRLLVKISNRFFRFMPKLVVLDLSANLDLIKLPEEISNLGSLQYLNISLTGIKS 595

Query: 291 LPQELKALEKLRYLNLDY-AFHLSIIPHQLISCFSKLEVLR-LCGCGRFGVIKGKEGNVL 348
           LP  LK L KL YLNL++   H S++   + +    L+VL+    C            V 
Sbjct: 596 LPVGLKKLRKLIYLNLEFTGVHGSLV--GIAATLPNLQVLKFFYSC------------VY 641

Query: 349 CDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNV 408
            D  + LMKEL  L+HL +L+ +      +++     +L S  +S+   C      P  +
Sbjct: 642 VD--DILMKELQDLEHLKILTANVKDVTILERIQGDDRLASSIRSL---CLEDMSTPRVI 696

Query: 409 LHLAYMENLQELELESCNLEEMKID----------STEEVKKLFRNGFRNLNTVVLRSCR 458
           L    +  LQ+L +  CN+ E++ID           TE +      GF+ L+TV +    
Sbjct: 697 LSTIALGGLQQLAILMCNISEIRIDWESKERRELSPTEILPSTGSPGFKQLSTVYINQLE 756

Query: 459 G-KDLTWLVFVQNLKQLNM-QGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516
           G +DL+WL++ QNLK+L +     +EEII+ EK  +I+++       F  LE L + +  
Sbjct: 757 GQRDLSWLLYAQNLKKLEVCWSPQIEEIINKEKGMNITKLHRDIVVPFGNLEDLALRQMA 816

Query: 517 NLKSVYPNPQPFPKLKKIQAFHCRQL 542
           +L  +  N +  P L+K     C +L
Sbjct: 817 DLTEICWNYRTLPNLRKSYINDCPKL 842

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
24461866	890	NBS-LRR type disease resistance protein	0.981	0.597	0.463	1e-122
24461865	892	NBS-LRR type disease resistance protein	0.981	0.596	0.464	1e-116
24461864	899	NBS-LRR type disease resistance protein	0.976	0.588	0.456	1e-112
24461863	889	NBS-LRR type disease resistance protein	0.985	0.600	0.453	1e-109
225443158	903	PREDICTED: probable disease resistance p	0.974	0.584	0.425	1e-106
24461861	890	NBS-LRR type disease resistance protein	0.974	0.593	0.448	1e-105
224055915	880	cc-nbs-lrr resistance protein [Populus t	0.981	0.604	0.407	1e-103
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.964	0.637	0.410	2e-99
225442867	893	PREDICTED: probable disease resistance p	0.964	0.585	0.419	3e-99
255553103	910	Disease resistance protein RPS5, putativ	0.979	0.583	0.412	7e-99

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/548 (46%), Positives = 352/548 (64%), Gaps = 16/548 (2%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           +K +V  L+   AWELFQ+ V   TL S   I +LA+T A+ECGGLPLAL  +GRAM  +
Sbjct: 306 KKFKVACLSDIDAWELFQQKVGEETLKS-PDIRQLAQTAAKECGGLPLALITIGRAMACK 364

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           +   +W  AI  +RTS+S+F G+  EV+  LKFSYDSL +D +RSCLLYC LYPEDY I 
Sbjct: 365 KTPEEWTYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCLLYCCLYPEDYCIS 424

Query: 124 KRELIDYWISEGFVYDFD------DGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWI 177
           K  LID WI EGF+ + D       G   +  LL ACLLEE GD  VKMHD++R+M+LWI
Sbjct: 425 KEILIDCWIGEGFLTERDRFGEQNQGYHILGILLHACLLEEGGDGEVKMHDVVRDMALWI 484

Query: 178 ACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDG 237
           AC ++KE+ NFLV AGV L EAP V  WE A+R+SL  N I +LSE+ TCP L+TL L+ 
Sbjct: 485 ACAIEKEKDNFLVYAGVGLIEAPDVSGWEKARRLSLMHNQITNLSEVATCPHLLTLFLNE 544

Query: 238 NRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA 297
           N ++ I + FF+ + +L+VL+L  +   + LP GIS LVSL HLDLS + I  LP ELKA
Sbjct: 545 NELQMIHNDFFRFMPSLKVLNL-ADSSLTNLPEGISKLVSLQHLDLSKSSIEELPLELKA 603

Query: 298 LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMK 357
           L  L+ LNL+Y + L+ IP QLIS  S+L VLR+         +  E ++L  G E +++
Sbjct: 604 LVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASHSAFDRASEDSILFGGGELIVE 663

Query: 358 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENL 417
           ELLGLK+L V+S++  SS  +Q FL   KL S T+++ ++C   +     V  LA ++ L
Sbjct: 664 ELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTRALLLQCFNDS-TSLEVSALADLKQL 722

Query: 418 QELELESC-NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC-RGKDLTWLVFVQNLKQLN 475
             L +  C  LEE+K+D T EV++     F +L  V + +C + KDLT+LVF  NL+ + 
Sbjct: 723 NRLWITECKKLEELKMDYTREVQQFV---FHSLKKVEILACSKLKDLTFLVFAPNLESIE 779

Query: 476 MQGF-TMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKI 534
           + G   MEE++S+ K +++ EV+ +  N F +L+ L ++  TNLKS+Y  P PFP LK +
Sbjct: 780 LMGCPAMEEMVSMGKFAEVPEVVAN-LNPFAKLQNLKLFGATNLKSIYWKPLPFPHLKSM 838

Query: 535 QAFHCRQL 542
              HC +L
Sbjct: 839 SFSHCYKL 846

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/547 (46%), Positives = 350/547 (63%), Gaps = 15/547 (2%)

Query: 5   KLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQR 64
           + +V  L++  AWELF++ V   T++SH  I +LA+T ARECGGLPLAL  +GRAM  ++
Sbjct: 307 RFKVACLSNIDAWELFRQNVGEETMNSHPDILQLAQTAARECGGLPLALITIGRAMACKK 366

Query: 65  KVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPK 124
              +W  AI  +RTS+S+F G+  EV+  LKFSYDSL +D +RSC LYC LYPEDY I K
Sbjct: 367 TPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCHLYCSLYPEDYCISK 426

Query: 125 RELIDYWISEGFVYDFD------DGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIA 178
            +LID WI E  + + D      +G   +  LL ACLLEE GD  VKMHD+IR+M+LWIA
Sbjct: 427 EKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEEGGDGEVKMHDVIRDMALWIA 486

Query: 179 CTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGN 238
           C +++E++NF V AGV L EAP V  WE A+R+SL  N I +LSEIPTCP L+TLLL+ N
Sbjct: 487 CDIEREKENFFVYAGVGLVEAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLLLNEN 546

Query: 239 RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKAL 298
            + +I + FFQ + +L+VL+L  +   + LP GIS LVSL HLDLS +DI   P ELKAL
Sbjct: 547 NLRKIQNYFFQFMPSLKVLNL-SHCELTKLPVGISELVSLQHLDLSESDIEEFPGELKAL 605

Query: 299 EKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE 358
             L+ L+L+Y  +L  IP QLIS  S+L VLR+ G       +  E ++L  G E +++E
Sbjct: 606 VNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGASHNAFDEASENSILFGGGELIVEE 665

Query: 359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQ 418
           LLGLKHL V++ +  SS  +Q FL   KL S TQ++ ++          V  LA ++ L 
Sbjct: 666 LLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLLQ-HFKDSTSLEVSALADLKQLN 724

Query: 419 ELEL-ESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC-RGKDLTWLVFVQNLKQLNM 476
            L++  S  LEE+K+D  EEV++     FR+LN V + +C + KDLT+LVF  NLK + +
Sbjct: 725 RLQIANSVILEELKMDYAEEVQQF---AFRSLNMVEICNCIQLKDLTFLVFAPNLKSIKV 781

Query: 477 Q-GFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQ 535
                MEEI S  K +++ EV+ +  N F +L+ L +    NLKS+Y    PFP LK + 
Sbjct: 782 GICHAMEEIASEGKFAEVPEVMAN-LNPFEKLQNLEVAGARNLKSIYWKSLPFPHLKAMS 840

Query: 536 AFHCRQL 542
             HC++L
Sbjct: 841 FLHCKKL 847

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/556 (45%), Positives = 339/556 (60%), Gaps = 27/556 (4%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           +K+EV  L+ + AWELF++ V   TL+    I ELAE +A+ECG LPLAL + GRAM  +
Sbjct: 308 KKIEVECLSANDAWELFRQNVGEETLNGQPKILELAERVAKECGCLPLALIVTGRAMACK 367

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           +   +W+ AI  ++TSAS+F G++  V   LKFSYDSL  D  RSCLLYC L+PEDY I 
Sbjct: 368 KTPAEWRDAIKVLQTSASEFPGLENNVLRVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIY 427

Query: 124 KRELIDYWISEGFV-----YDFDD-GCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWI 177
           K  LID WI EGF+     Y+  D G   + +++ ACLLEEEGDD VKMHD+IR+M+LWI
Sbjct: 428 KENLIDCWIGEGFLKVTGKYELQDRGHTILGNIVHACLLEEEGDDVVKMHDVIRDMTLWI 487

Query: 178 ACTVDKEE------QNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
           AC  +K E      +N+LV  G  LTEAP V EWE AKR+SL    I +LSE+PTC  L+
Sbjct: 488 ACDTEKTEDTEKKKENYLVYEGAGLTEAPNVREWENAKRLSLMETQIRNLSEVPTCLHLL 547

Query: 232 TLLLDGN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG 290
           TL L  N  +E IT  FF+S+  L+VL+L G    S+ P G+S LVSL HLDLS T I  
Sbjct: 548 TLFLVFNEELEMITGDFFKSMPCLKVLNLSGARRMSSFPLGVSVLVSLQHLDLSGTAIQE 607

Query: 291 LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD 350
           LP+EL ALE L+ LNLD   +L  IP QLIS FS L VLR+ G G +     +  + L  
Sbjct: 608 LPKELNALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRMFGVGDWSPNGKRNDSDLFS 667

Query: 351 GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRP-PFNVL 409
           G + L++ L GLKHL VLS +  +S  +Q  L   KL S TQ++++   ++ R  P +V 
Sbjct: 668 GGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSCTQALYLH--SFKRSEPLDVS 725

Query: 410 HLAYMENLQELELESC-NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC-RGKDLTWLVF 467
            LA +E+L  L +  C  LEE+K+     V       F++L  + +  C R K+LT+L+F
Sbjct: 726 ALAGLEHLNRLWIHECEELEELKMARQPFV-------FQSLEKIQIYGCHRLKNLTFLLF 778

Query: 468 VQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQ 526
             NLK + +   F MEEIIS  K +D  EV+      F +L  L +   T LKS+Y  P 
Sbjct: 779 APNLKSIEVSSCFAMEEIISEVKFADFPEVMPIIKP-FAQLYSLRLGGLTVLKSIYKRPL 837

Query: 527 PFPKLKKIQAFHCRQL 542
           PFP L+ +    C +L
Sbjct: 838 PFPCLRDLTVNSCDEL 853

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/554 (45%), Positives = 339/554 (61%), Gaps = 20/554 (3%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           +K  V  L+ + AWELF++ V   TL S   I ELA+ +A ECGGLPLAL  +G+AM  +
Sbjct: 298 KKFGVGCLSANDAWELFRQNVGEETLTSDHDIAELAQIVAEECGGLPLALITIGQAMAYK 357

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           + V +W+ AI  +R SAS+F G  + V    KFSYDSL  D  RSC LYC LYP+DY I 
Sbjct: 358 KTVEEWRHAIEVLRRSASEFPGF-DNVLRVFKFSYDSLPDDTTRSCFLYCCLYPKDYGIL 416

Query: 124 KRELIDYWISEGFVYDF------DDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWI 177
           K +LID WI EGF+ +       + G   +  L+ ACLLEE  DD VKMHD++R M+LWI
Sbjct: 417 KWDLIDCWIGEGFLEESARFVAENQGYCIVGTLVDACLLEEIEDDKVKMHDVVRYMALWI 476

Query: 178 ACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLL-D 236
            C +++E++NFLVRAG  L +AP V+EWE  +R+SL  N I  LSE+PTCP L TL L  
Sbjct: 477 VCEIEEEKRNFLVRAGAGLEQAPAVKEWENVRRLSLMQNDIKILSEVPTCPDLHTLFLAS 536

Query: 237 GNRIEEITDGFFQSLSTLRVLSLR--GNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQE 294
            N ++ ITDGFF+ + +L+VL +   G+     LP G+S L SL  LD+S T I  LP+E
Sbjct: 537 NNNLQRITDGFFKFMPSLKVLKMSHCGDLKVLKLPLGMSMLGSLELLDISQTSIGELPEE 596

Query: 295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL--CGCGRFGVIKGKEGNVLCDGA 352
           LK L  L+ LNL +A  LS IP QLIS  S+L VLR+   GC      +  E +VL  G 
Sbjct: 597 LKLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLRMFATGCSHS---EASEDSVLFGGG 653

Query: 353 EPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA 412
           E L++ELLGLK+L VL  +  SS A+Q F    KL S  +S+ ++    T+   +    A
Sbjct: 654 EVLIQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEVRGTKSIIDATAFA 713

Query: 413 YMENLQELELES-CNLEEMKIDSTEEVKKLFRN-GFRNLNTVVLRSC-RGKDLTWLVFVQ 469
            + +L EL ++S   +EE+KID TE V+K      F +L+ V L  C + KDLT+LVF  
Sbjct: 714 DLNHLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAP 773

Query: 470 NLKQLNMQGF-TMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPF 528
           NLK L +     MEEIISV K +++ EV+G   + F  L+ L ++    LKS+Y  P PF
Sbjct: 774 NLKSLQLLNCRAMEEIISVGKFAEVPEVMG-HISPFENLQRLHLFDLPRLKSIYWKPLPF 832

Query: 529 PKLKKIQAFHCRQL 542
             LK+++   C QL
Sbjct: 833 THLKEMRVHGCNQL 846

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 240/564 (42%), Positives = 346/564 (61%), Gaps = 36/564 (6%)

Query: 5   KLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQR 64
           +++V  LA  +AW+LFQ MV   TL+SH  IP+LAET+ +EC GLPLAL   GR M  ++
Sbjct: 305 RIKVECLAWKQAWDLFQNMVGEDTLNSHPEIPQLAETIVKECLGLPLALVTTGRTMACKK 364

Query: 65  KVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPK 124
              +WK AI  +++S+S F GM++EVFS LKFSYD+L +D  RSC LYC LYPED +I K
Sbjct: 365 APQEWKFAIKMLQSSSSSFPGMRDEVFSLLKFSYDNLPSDTARSCFLYCSLYPEDNDIFK 424

Query: 125 RELIDYWISEGFVYDFDD-------GCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWI 177
            +LID WI EGF+ +FDD       G D I  L++ACLLEE  +  VKMHD+IR+M+LWI
Sbjct: 425 EDLIDCWICEGFLDEFDDRDGARNQGFDIIGSLIRACLLEESREYFVKMHDVIRDMALWI 484

Query: 178 ACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDG 237
           AC   + +  FLV+AG  LTE P++ +W+G +R+SL +N I  L+++PTCP L+TL L+ 
Sbjct: 485 ACECGRVKDKFLVQAGAGLTELPEIGKWKGVERMSLMSNHIEKLTQVPTCPNLLTLFLNN 544

Query: 238 NRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA 297
           N +E ITDGFFQ +  L+VL+L  +   S LP+ I  LVSL +LDLS T I+ LP E K 
Sbjct: 545 NSLEVITDGFFQLMPRLQVLNLSWS-RVSELPTEIFRLVSLRYLDLSWTCISHLPNEFKN 603

Query: 298 LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMK 357
           L  L+YLNLDY   L IIP  ++S  S+L+VL++  CG +GV    E NVL DG E L+ 
Sbjct: 604 LVNLKYLNLDYTQQLGIIPRHVVSSMSRLQVLKMFHCGFYGV---GEDNVLSDGNEALVN 660

Query: 358 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENL 417
           EL  L +L  L+ +  S+ A+Q+ L   K+   TQ ++++         N L ++++EN+
Sbjct: 661 ELECLNNLCDLNITIRSASALQRCLCSEKIEGCTQDLFLQFFN----GLNSLDISFLENM 716

Query: 418 QELEL----ESCNLEEMKIDSTEEVKKLFRN-------------GFRNLNTVVLRSCRG- 459
           + L+     +   L ++ I+ T+E +++  +              F +L +V +  C   
Sbjct: 717 KRLDTLHISDCATLADLNINGTDEGQEILTSDNYLDNSKITSLKNFHSLRSVRIERCLML 776

Query: 460 KDLTWLVFVQNLKQLNMQ-GFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL 518
           KDLTWLVF  NL  L +     +E++I   K  + +E  G   + F +LE L +     L
Sbjct: 777 KDLTWLVFAPNLVNLWIVFCRNIEQVIDSGKWVEAAE--GRNMSPFAKLEDLILIDLPKL 834

Query: 519 KSVYPNPQPFPKLKKIQAFHCRQL 542
           KS+Y N   FP LK+++   C +L
Sbjct: 835 KSIYRNTLAFPCLKEVRVHCCPKL 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/549 (44%), Positives = 336/549 (61%), Gaps = 21/549 (3%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           +K +V  L+ + AWELF++ V   TL+ H  I ELA+T+ +ECGGLPLAL  +GRAM  +
Sbjct: 307 KKFKVECLSGNDAWELFRQKVGEETLNCHHDILELAQTVTKECGGLPLALITIGRAMACK 366

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           +   +W  AI  +RTS+S+F G+  EV+  LKFSYD+L  D +RSCLLYC LYPED  I 
Sbjct: 367 KTPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTIRSCLLYCCLYPEDCCIS 426

Query: 124 KRELIDYWISEGFVY------DFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWI 177
           K  L+D WI EG +         + G   +  L+ +CLLEE  +D VKMHD+IR+M+LW+
Sbjct: 427 KENLVDCWIGEGLLNGSVTLGSHEQGYHVVGILVHSCLLEEVDEDEVKMHDVIRDMALWL 486

Query: 178 ACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDG 237
           AC  +KE++N+LV AG  L EAP V EWE  +R+SL  N I +LSE+PTCP L+TL L+ 
Sbjct: 487 ACDAEKEKENYLVYAGAGLREAPDVIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNS 546

Query: 238 NRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELK 296
           + I   I   F QS+  L+VL+L        LP GIS LVSL +LDLS++ I+ +P+ELK
Sbjct: 547 DDILWRINSDFLQSMLRLKVLNLSRYMGLLVLPLGISKLVSLEYLDLSTSLISEIPEELK 606

Query: 297 ALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLM 356
           AL  L+ LNL+Y   L  IP QLIS FS+L VLR+ G   F        +VL  G E L+
Sbjct: 607 ALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAYFSYGNYPIESVLFGGGELLV 666

Query: 357 KELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMEN 416
           +ELLGLKHL VLS + GSS A+Q FL    L S T+++ ++         +V  LA ++ 
Sbjct: 667 EELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSCTRAMLLQ-DFQGSTSVDVSGLADLKR 725

Query: 417 LQELELESC-NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC-RGKDLTWLVFVQNLKQL 474
           L+ L +  C  L E+KID   EV+   R GF +L +  +  C + KDLT LV + NLK +
Sbjct: 726 LKRLRISDCYELVELKIDYAGEVQ---RYGFHSLQSFEVNYCSKLKDLTLLVLIPNLKSI 782

Query: 475 NMQGF-TMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKK 533
            +     MEEIISV + +          N F +L+YL +    NLKS+Y  P PFP L++
Sbjct: 783 EVTDCEAMEEIISVGEFA-------GNPNAFAKLQYLGIGNLPNLKSIYWKPLPFPCLEE 835

Query: 534 IQAFHCRQL 542
           +    C +L
Sbjct: 836 LTVSDCYEL 844

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055915|ref|XP_002298700.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222845958|gb|EEE83505.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/562 (40%), Positives = 340/562 (60%), Gaps = 30/562 (5%)

Query: 1   MDAEK-LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA 59
           MDA K ++V  LA D AW+LFQ+ V   TL  HT IP+LA  +A+ECGGLPLAL  +GRA
Sbjct: 301 MDAHKTMKVDCLAWDDAWDLFQKKVGDQTLCVHTDIPKLARNVAKECGGLPLALITIGRA 360

Query: 60  MKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPED 119
           M  ++   +W+ AI  +R SAS+FSGM +EVF  LKFSYD+LS  ++R+C LYC L+PED
Sbjct: 361 MACKKTPQEWRHAIEVLRKSASEFSGMGDEVFPLLKFSYDNLSKQKIRTCFLYCSLFPED 420

Query: 120 YEIPKRELIDYWISEGFVYDFDDGCDFIDD--------LLQACLLEEEGDDHVKMHDMIR 171
           + I K +LIDYWI EG ++D  DG + +++        LL ACLLE++ DD V+MHD+IR
Sbjct: 421 FLINKNDLIDYWIGEG-IFDGSDGREVVENWGYHVIGCLLHACLLEDK-DDCVRMHDVIR 478

Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
           +M+LWIA  +++++QNF V+ G + ++A +V +WEG +++SL AN I  LS  P C  L 
Sbjct: 479 DMALWIASDIERDQQNFFVQTGAQSSKALEVGKWEGVRKVSLMANHIVHLSGTPNCSNLR 538

Query: 232 TLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGL 291
           TL L    + +I+ GFFQ +  L VL L  N     LP  +  LVSL +L+LS T I  L
Sbjct: 539 TLFLGSIHLNKISRGFFQFMPNLTVLDLSNNNSLLGLPRDVWKLVSLQYLNLSRTGIKEL 598

Query: 292 PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351
           P EL  L KLRYLNL+Y   L ++PH +IS F  + +LR+  CG     +  E  +L   
Sbjct: 599 PTELNELVKLRYLNLEYTHSLYLLPHGVISGFPMMRILRMFRCGSSE--QAAEDCILSRD 656

Query: 352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL 411
            E L++EL  L+ LN+L+ +  S+ A+++   +  + S T+ +++E   +     N   L
Sbjct: 657 -ESLVEELQCLEELNMLTVTIRSAAALERLSSFQGMQSSTRVLYLEL-FHDSKLVNFSSL 714

Query: 412 AYMENLQELELESC-NLEEMKIDSTEEVKKL-----------FRNGFRNLNTVVLRSC-R 458
           A M+NL  L +  C +LEE++ID   E++K+               FR+L++V + +C +
Sbjct: 715 ANMKNLDTLHICHCGSLEELQIDWEGELQKMQAINNLAQVATTERPFRSLSSVYVENCLK 774

Query: 459 GKDLTWLVFVQNLKQLNMQGF-TMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTN 517
             +LTWL+  QNL  L +     + E+ S EKL ++ E++    N F +L+ + +    N
Sbjct: 775 LSNLTWLILAQNLTFLRVSNCPKLVEVASDEKLPEVPELV-ENLNPFAKLKAVELLSLPN 833

Query: 518 LKSVYPNPQPFPKLKKIQAFHC 539
           LKS Y N  P P +K ++   C
Sbjct: 834 LKSFYWNALPLPSVKDVRVVDC 855

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 226/550 (41%), Positives = 322/550 (58%), Gaps = 27/550 (4%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           EK+ V  LA +KAW+LFQE V   TL  H  IPELAET+A+ C GLPLAL  VGRAM  +
Sbjct: 240 EKIRVGGLAWEKAWKLFQEKVGEDTLKIHPDIPELAETIAKMCNGLPLALITVGRAMAFR 299

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
           + + +W+ +I  +  + ++FS      F  LKF YDSL  D++RSC LYC L+PE + I 
Sbjct: 300 KTLLEWRHSIEALSRATAEFSRTPCRDFVLLKFGYDSLRNDKVRSCFLYCALFPEGFFIN 359

Query: 124 KRELIDYWISEGFVYDFDD-------GCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLW 176
           K  LIDYWI EGF+  + D       G + ID L QACLLE+EG D VKMH +IR+M+LW
Sbjct: 360 KSYLIDYWIGEGFLGAYSDAYEARTEGHNIIDILTQACLLEDEGRD-VKMHQVIRDMALW 418

Query: 177 IACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLD 236
           +     KE   +LV AG +L +AP+V +WE  +R+SL AN I +LS+ P C  LVTL L 
Sbjct: 419 MDSR--KENPVYLVEAGTQLADAPEVGKWEVVRRVSLMANNIQNLSKAPRCNDLVTLFLK 476

Query: 237 GNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELK 296
            N ++ I+D FFQ + +L+VL L  N   +  PSGI  LVSL +L+LS T I  LP +LK
Sbjct: 477 KNNLKMISDTFFQFMLSLKVLDLSENREITEFPSGILKLVSLQYLNLSRTGIRQLPVQLK 536

Query: 297 ALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLM 356
            L KL+ LNL++ + L  IP Q+IS FS L VLR+  C     + G    V   G   L 
Sbjct: 537 NLVKLKCLNLEHTYELRTIPMQVISNFSSLTVLRMFHCASSDSVVGD--GVQTGGPGSLA 594

Query: 357 KELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMEN 416
           ++L  L+HLN+L+ +  S  ++Q F  + K ++ TQ++ ++   + R   ++  L  M +
Sbjct: 595 RDLQCLEHLNLLTITIRSQYSLQTFASFNKFLTATQALSLQKFHHAR-SLDISLLEGMNS 653

Query: 417 LQELELESC-NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLN 475
           L +LEL  C NL+++ I+++   ++   N  R ++  ++   + +DL WL    N+K L 
Sbjct: 654 LDDLELIDCSNLKDLSINNSSITRETSFNSLRRVS--IVNCTKLEDLAWLTLAPNIKFLT 711

Query: 476 MQGFT-MEEIISVEKLSDISEVIGSEHNF--FPRLEYLTMWRGTNLKSVYPNPQPFPKLK 532
           +   + MEEII  EK          + N   F  LE+L +     LK +YP+  PFP LK
Sbjct: 712 ISRCSKMEEIIRQEK--------SGQRNLKVFEELEFLRLVSLPKLKVIYPDALPFPSLK 763

Query: 533 KIQAFHCRQL 542
           +I    C  L
Sbjct: 764 EIFVDDCPNL 773

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 236/562 (41%), Positives = 323/562 (57%), Gaps = 39/562 (6%)

Query: 1   MDAEK-LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA 59
           M+A+K ++V  L   ++WELF+  +   TLD H  IPELA+ +A+EC GLPL L  +GRA
Sbjct: 298 MEADKKIKVECLTWTESWELFRMKLGEDTLDFHPEIPELAQAVAQECCGLPLVLTTIGRA 357

Query: 60  MKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPED 119
           M  ++   +WK A   +++SASKF GM + VF  LK+SYD L T+ +RSC LYC L+PED
Sbjct: 358 MACKKTPQEWKYAFKVLQSSASKFPGMSDRVFPLLKYSYDCLPTEVVRSCFLYCSLFPED 417

Query: 120 YEIPKRELIDYWISEGFVYDFDD-------GCDFIDDLLQACLLEEEGDDH-VKMHDMIR 171
           Y+IPK  +I  W  EG + +FDD       G + I  L+ ACLLEE   D+ VK+HD+IR
Sbjct: 418 YQIPKIAMIKRWFCEGLLDEFDDMKGAENQGYNIIGTLIHACLLEEGDVDYVVKLHDVIR 477

Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
           +M+LWIAC   KE+  FLV+A   LTEAP+V  W G KRISL  N I  L+  P CP L 
Sbjct: 478 DMALWIACETGKEQDKFLVQASSGLTEAPEVARWMGPKRISLIGNQIEKLTGSPNCPNLS 537

Query: 232 TLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGL 291
           TL L  N ++ ITD FFQ +  LRVL L  N   + LP GIS LVSL +L+LS T+I  L
Sbjct: 538 TLFLQDNSLKMITDSFFQFMPNLRVLDLSRN-AMTELPQGISNLVSLQYLNLSQTNIKEL 596

Query: 292 PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351
           P ELK L KL++L L +   LS IP QLIS  S L+V+ +  CG            +CDG
Sbjct: 597 PIELKNLGKLKFLLL-HRMRLSSIPEQLISSLSMLQVIDMFNCG------------ICDG 643

Query: 352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL 411
            E L++EL  LK+L+ L  +  S+ A ++ L   KL S    V +E         N+  L
Sbjct: 644 DEALVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCISGVCLE-NFNGSSSLNLTSL 702

Query: 412 AYMENLQELELESC-NLEEMKIDSTEEVKKLF-----------RNGFRNLNTVVLRSC-R 458
             ++ L+ L + +C + E+++ID   E K+              + F NL+ + ++ C R
Sbjct: 703 CNVKRLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSSFHNLSWLRVKRCSR 762

Query: 459 GKDLTWLVFVQNLKQLNMQGF-TMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTN 517
            KDLTWLVF  NLK L +     M+EII   K  + +E  G   + F +L+ LT+     
Sbjct: 763 LKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGESTEN-GENLSPFVKLQVLTLEDLPQ 821

Query: 518 LKSVYPNPQPFPKLKKIQAFHC 539
           LKS++    PF  L  I    C
Sbjct: 822 LKSIFWKALPFIYLNTIYVDSC 843

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553103|ref|XP_002517594.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223543226|gb|EEF44758.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 231/560 (41%), Positives = 328/560 (58%), Gaps = 29/560 (5%)

Query: 1   MDAEKLEVY--SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGR 58
           MDAEK+ +Y   LA + AWELFQE +   TL  H  IP LA  +A++C GLPLAL  + R
Sbjct: 302 MDAEKI-IYLKPLAWEIAWELFQEKIGEETLHIHPEIPRLAHDIAKKCQGLPLALITIAR 360

Query: 59  AMKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPE 118
           AM S+R + +W  A+  +    S F GM + VF+ LK+SYDSL  D+++SC LYC L+P 
Sbjct: 361 AMASRRTLQEWNHAVEVLSNPTSDFHGMWDNVFTILKYSYDSLPNDKIKSCFLYCTLFPR 420

Query: 119 DYEIPKRELIDYWISEGFVYDFDDGCDFIDD-------LLQACLLEEEGDDHVKMHDMIR 171
           +++I K +LI YW+ E F  ++D+G    D        L++ACLLE+EG D+VKMHD+IR
Sbjct: 421 NFKIFKSDLIAYWMCEEFWDEYDNGSSANDKGHHIMGVLVRACLLEDEG-DYVKMHDVIR 479

Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
           +M L IAC   + ++  LV+AG  L EAP+  +WE  KR+SL  N I  L+E+PTCP L 
Sbjct: 480 DMGLRIACNCARTKETNLVQAGALLIEAPEARKWEHIKRMSLMENSIRVLTEVPTCPELF 539

Query: 232 TLLLDGN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG 290
           TL L  N  +  I   FF+S+  L VL L        LPSGIS +VSL +L++S T I  
Sbjct: 540 TLFLCHNPNLVMIRGDFFRSMKALTVLDL-SKTGIQELPSGISDMVSLQYLNISYTVINQ 598

Query: 291 LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD 350
           LP  L  LEKL+YLNL++  +L +IP QL+   S+L+ LR+ GCG     + K+ N+L D
Sbjct: 599 LPAGLMRLEKLKYLNLEHNENLYMIPKQLVRSLSRLQALRMLGCGPVHYPQAKD-NLLSD 657

Query: 351 GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH 410
           G    +KEL  L++LN LS +   + A+Q F    KL S  +++ +E    +    N+  
Sbjct: 658 GV--CVKELQCLENLNRLSITVRCASALQSFFSTHKLRSCVEAISLE-NFSSSVSLNISW 714

Query: 411 LAYMENL----QELELES--CNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC-RGKDLT 463
           LA M++L      L + S     E   + +      L    F NL  V +R C + +DLT
Sbjct: 715 LANMQHLLTCPNSLNINSNMARTERQAVGNLHNSTILRTRCFNNLQEVRVRKCFQLRDLT 774

Query: 464 WLVFVQNLKQLNM-QGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY 522
           WL+ V NL  L +     +EEIISVE+L  + +++    N F RL+ L +     +K +Y
Sbjct: 775 WLILVPNLTVLEVTMCRNLEEIISVEQLGFVGKIL----NPFARLQVLELHDLPQMKRIY 830

Query: 523 PNPQPFPKLKKIQAFHCRQL 542
           P+  PFP LKKI+ F+C  L
Sbjct: 831 PSILPFPFLKKIEVFNCPML 850

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.952	0.577	0.398	8e-85
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.953	0.582	0.377	2.4e-83
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.953	0.581	0.383	3.6e-82
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.964	0.614	0.375	5.8e-82
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.966	0.587	0.364	7.4e-82
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.946	0.580	0.382	2.5e-81
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.952	0.583	0.373	4.1e-81
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.950	0.572	0.363	6.2e-78
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.948	0.674	0.369	3.4e-77
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.968	0.619	0.355	8.1e-76

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 221/555 (39%), Positives = 305/555 (54%)

Query:     4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
             + +EV  L  ++AWELFQ  V  +TL  H  IPELA  +A +C GLPLAL ++G  M  +
Sbjct:   306 DPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACK 365

Query:    64 RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
             R V +W+ AI+ + + A++F GM E++   LK+SYD+L+ ++++ C LYC L+PEDY + 
Sbjct:   366 RMVQEWRNAIDVLSSYAAEFPGM-EQILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRME 424

Query:   124 KRELIDYWISEGFVYXXXXXXXXXXX-------LLQACLLEEEG--DDHVKMHDMIREMS 174
             K  LIDYWI EGF+                   L++ACLL EE    + VKMHD++REM+
Sbjct:   425 KERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMA 484

Query:   175 LWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLL 234
             LWIA  + + ++  +V+ GV L E PKV+ W   +R+SL  N I  LS  P C  L TL 
Sbjct:   485 LWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLF 544

Query:   235 LDGN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ 293
             L  N  +  I+D FF+ +  L VL L GN     LP+ IS LVSL +LDLS T I  LP 
Sbjct:   545 LQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPV 604

Query:   294 ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAE 353
              L+ L+KLRYL LDY   L  I    IS  S L  L+L            +  +  D + 
Sbjct:   605 GLQELKKLRYLRLDYMKRLKSISG--ISNISSLRKLQLL-----------QSKMSLDMS- 650

Query:   354 PLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY 413
              L++EL  L+HL VL+ S  SSL V+K L  P+LV   Q + V  G        VL L  
Sbjct:   651 -LVEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQ-ILVLRGVQEESS-GVLTLPD 707

Query:   414 MENLQELELESCNLEEMKID----STEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFV 468
             M+NL ++ +  C + E+KI+    S    +        NL+TV + SC G KDLTWL+F 
Sbjct:   708 MDNLNKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFA 767

Query:   469 QNLKQLN-MQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQP 527
              NL  L  +    +E II+ EK   +S +I      F +LE L +     L+S+Y  P  
Sbjct:   768 PNLTSLEVLDSELVEGIINQEKAMTMSGIIP-----FQKLESLRLHNLAMLRSIYWQPLS 822

Query:   528 FPKLKKIQAFHCRQL 542
             FP LK I    C +L
Sbjct:   823 FPCLKTIHITKCPEL 837

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 209/554 (37%), Positives = 320/554 (57%)

Query:     1 MDAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAM 60
             +D++ +EV  LA D AW+LF + V   TL SH  IP +A T+A++C GLPLAL ++G  M
Sbjct:   302 VDSD-MEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETM 360

Query:    61 KSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDY 120
               +R V +W+ AI+ + +SA++FSGM++E+   LK+SYD+L +++L+ C  YC L+PED+
Sbjct:   361 AYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDH 420

Query:   121 EIPKRELIDYWISEGFV-----YXXXXXXXXXXXLLQACLLEEEGDDHVKMHDMIREMSL 175
              I K +L+DYWI EGF+                 L+++CLL EE  + VKMHD++REM+L
Sbjct:   421 NIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLLMEENQETVKMHDVVREMAL 480

Query:   176 WIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLL 235
             WIA    K+++NF+V+AG++    P++E+W+ A+R+SL  N I S+ + P  P+L+TLLL
Sbjct:   481 WIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLL 540

Query:   236 DGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL 295
               N +  I+  FF+ +  L VL L  N     LP+ IS  VSL +L LS T I   P  L
Sbjct:   541 RKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGL 600

Query:   296 KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPL 355
               L KL YLNL+Y   +  I    IS  + L+VLRL     F  + G   +  C     +
Sbjct:   601 VELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRL-----F--VSGFPEDP-C-----V 645

Query:   356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH-LAYM 414
             + EL  L++L  L+ + G +  +++FL   +L S T+++ +E      P  +V+  +A M
Sbjct:   646 LNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIE---NLNPQSSVISFVATM 702

Query:   415 ENLQELELESCNLEEMKIDSTEEVKKLF----RNGFRNLNTVVLRSC-RGKDLTWLVFVQ 469
             ++LQEL     ++ E+K+   E V  L        F NL+ V L  C R +DLTWL+F  
Sbjct:   703 DSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAP 762

Query:   470 NLKQLNM-QGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPF 528
             NL  L +     ++E+I+ EK ++   +I  +     RLE + M     LK ++  P PF
Sbjct:   763 NLTVLRVISASDLKEVINKEK-AEQQNLIPFQELKELRLENVQM-----LKHIHRGPLPF 816

Query:   529 PKLKKIQAFHCRQL 542
             P L+KI    C +L
Sbjct:   817 PCLQKILVNGCSEL 830

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 213/555 (38%), Positives = 307/555 (55%)

Query:     4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
             + +EV  L  +++W+LFQ  V ++TL SH  IP LA  +AR+C GLPLAL ++G AM  +
Sbjct:   306 DPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACK 365

Query:    64 RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
             R V +W  AI+ + +SA  FSGM++E+   LK+SYD+L+ + ++SC LYC L+PEDY I 
Sbjct:   366 RTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLID 425

Query:   124 KRELIDYWISEGFVYXXXXXXXXXX-------XLLQACLL--EEEGDDHVKMHDMIREMS 174
             K  L+DYWISEGF+                   L++ACLL  EE    +VKMHD++REM+
Sbjct:   426 KEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMA 485

Query:   175 LWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLL 234
             LWI+  + K+++  +VRAGV L E PKV++W   ++ISL  N I  + +   C  L TL 
Sbjct:   486 LWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLF 545

Query:   235 LDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQE 294
             L  N + +I+  FF+ +  L VL L  N   + LP  IS L SL + +LS T I  LP  
Sbjct:   546 LQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVG 605

Query:   295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354
             L  L+KL +LNL+   H+S +    I   S L  LR  G         ++  +L D +  
Sbjct:   606 LWTLKKLIHLNLE---HMSSLGS--ILGISNLWNLRTLGL--------RDSRLLLDMS-- 650

Query:   355 LMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYM 414
             L+KEL  L+HL V++    SSL  +  L   +LV   + V  +          VL L  M
Sbjct:   651 LVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEV--DFKYLKEESVRVLTLPTM 708

Query:   415 ENLQELELESCNLEEMKIDSTEEVKKLFRNG----FRNLNTVVLRSCRG-KDLTWLVFVQ 469
              NL++L ++ C + E+KI+ T       ++     F NL+ V +  C G KDLTWL+F  
Sbjct:   709 GNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAP 768

Query:   470 NLKQLNMQGFT--MEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQP 527
             NL  L + GF+  +E+IIS EK  + S  I      F +LE L ++    LK +Y     
Sbjct:   769 NLTFLEV-GFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFELRGLKRIYAKALH 823

Query:   528 FPKLKKIQAFHCRQL 542
             FP LK I    C +L
Sbjct:   824 FPCLKVIHVEKCEKL 838

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 209/557 (37%), Positives = 312/557 (56%)

Query:     1 MDAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAM 60
             +D E ++V  L  D+AWELFQ+ V    L SH  IP LA  +A +C GLPLAL ++G+AM
Sbjct:   301 VDGE-MKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAM 359

Query:    61 KSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDY 120
              S+  V +W+  I+ + +S+ +F  M+E++   LKFSYD L  ++++ C LYC L+PEDY
Sbjct:   360 ASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDY 419

Query:   121 EIPKRELIDYWISEGFVYXXXXXXXXXX-------XLLQACLLEE-EGDDHVKMHDMIRE 172
             E+ K ELI+YW+ EGF+                   L++A LL + E    VKMHD+IRE
Sbjct:   420 EVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHLLMDGELTTKVKMHDVIRE 479

Query:   173 MSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVT 232
             M+LWIA    K+++   V+ GV+L   PK   WE  +R+SL  N I ++S     P L T
Sbjct:   480 MALWIASNFGKQKETLCVKPGVQLCHIPKDINWESLRRMSLMCNQIANISSSSNSPNLST 539

Query:   233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLP 292
             LLL  N++  I+  FF+ +  L VL L  N   S+LP  IS L SL +++LS+T I  LP
Sbjct:   540 LLLQNNKLVHISCDFFRFMPALVVLDLSRNSSLSSLPEAISKLGSLQYINLSTTGIKWLP 599

Query:   293 QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGA 352
                K L+KL +LNL++   L  I   + +    L+VL+L     F         V  DG+
Sbjct:   600 VSFKELKKLIHLNLEFTDELESIVG-IATSLPNLQVLKL-----FS------SRVCIDGS 647

Query:   353 EPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA 412
               LM+ELL L+HL VL+ +   +L ++      +LVS  Q++   C      P  +L+  
Sbjct:   648 --LMEELLLLEHLKVLTATIKDALILESIQGVDRLVSSIQAL---CLRNMSAPVIILNTV 702

Query:   413 YMENLQELELESCNLEEMKID----STEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVF 467
              +  LQ LE+    + E+KID       E+K     GF++L+ V + +  G +DLTWL+F
Sbjct:   703 ALGGLQHLEIVGSKISEIKIDWERKGRGELKCTSSPGFKHLSVVEIFNLEGPRDLTWLLF 762

Query:   468 VQNLKQLNMQ-GFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTN-LKSVYPNP 525
              QNL++L++    T+EEII+ EK   I+ V  +    F +LE+L + RG + LK +  NP
Sbjct:   763 AQNLRRLSVTLSLTIEEIINKEKGMSITNVHPNIVVPFGKLEFLEV-RGLDELKRICWNP 821

Query:   526 QPFPKLKKIQAFHCRQL 542
                P L++     C +L
Sbjct:   822 PALPNLRQFDVRSCLKL 838

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 202/554 (36%), Positives = 302/554 (54%)

Query:     4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
             + +EV  L+ + AWELFQE V + +L SH  I ELA+ +A +C GLPLAL ++G  M  +
Sbjct:   303 DPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGK 362

Query:    64 RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
             R V +W  A++ + + A++FSGM + +   LK+SYD+L+   +RSC  YC LYPEDY I 
Sbjct:   363 RAVQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIK 422

Query:   124 KRELIDYWISEGFV-------YXXXXXXXXXXXLLQACLLEEEGDD--HVKMHDMIREMS 174
             K  LIDYWI EGF+                   L++ACLL EEG +   VKMHD++REM+
Sbjct:   423 KYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMA 482

Query:   175 LWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLL 234
             LW    + K ++  +V+AG  L + PKVE+W   +R+SL  NGI  +S  P CP L TL 
Sbjct:   483 LWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLF 542

Query:   235 LDGNR-IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ 293
             L  N+ +  I+  FF+ +  L VL L  N     LP  IS LV+L +LDLS T+I GLP 
Sbjct:   543 LQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPA 602

Query:   294 ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAE 353
              L+ L+ L +LNL+    L  I     +  SKL  LR  G         +  N++ D   
Sbjct:   603 CLQDLKTLIHLNLECMRRLGSI-----AGISKLSSLRTLGL--------RNSNIMLDVMS 649

Query:   354 PLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY 413
               +KEL  L+HL +L+    S++ +++ +    L++  Q V + C  Y +     L L  
Sbjct:   650 --VKELHLLEHLEILTIDIVSTMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPT 707

Query:   414 MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLK 472
             M++L+ L + +C + E++I+            F NL+ V++  C   KDLTWL+F  N+ 
Sbjct:   708 MDSLRSLTMWNCEISEIEIERLTWNTNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNIT 767

Query:   473 QLNMQGFT-MEEIISVEKLSDISEVIGSE-HNFFP--RLEYLTMWRGTNLKSVYPNPQPF 528
              L ++    ++E+IS  K + ++E    + H   P  +L+ L +     LKS+Y     F
Sbjct:   768 YLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSF 827

Query:   529 PKLKKIQAFHCRQL 542
             P L  I    C +L
Sbjct:   828 PCLSGIYVERCPKL 841

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 212/554 (38%), Positives = 302/554 (54%)

Query:     4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
             + +EV  L  D AW+LF++ V   TL SH  IPE+A  +A+ C GLPLAL ++G  M  +
Sbjct:   305 DPMEVRCLGADDAWDLFKKKVGDITLSSHPDIPEIARKVAQACCGLPLALNVIGETMACK 364

Query:    64 RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
             +   +W RA++   T A+ F  +KE +   LK+SYD+L ++ +++C LYC L+PED  I 
Sbjct:   365 KTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPEDDLIE 424

Query:   124 KRELIDYWISEGFVYXXXXXXXXXX-------XLLQACLLEEEGD----DHVKMHDMIRE 172
             K  LIDYWI EGF+                   L+ A LL E G      +VKMHD++RE
Sbjct:   425 KERLIDYWICEGFIDGDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSYVKMHDVVRE 484

Query:   173 MSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVT 232
             M+LWIA  + K + N +VRAG +L E PKV++W+   R+SL  N I  +   P CP+L T
Sbjct:   485 MALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTT 544

Query:   233 LLLDGNR-IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGL 291
             L L  NR +  I+  FF+S+  L VL L  N   S LP  IS LVSL +LDLS + I  L
Sbjct:   545 LFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRL 604

Query:   292 PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351
             P  L  L+KL +LNL+    L  +    I   S L+ +RL     +  I           
Sbjct:   605 PVGLLKLKKLMHLNLESMLCLESVSG--IDHLSNLKTVRLLNLRMWLTIS---------- 652

Query:   352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL 411
                L++EL  L++L VL+    SS A+++ L   +LV   Q V V+          +L L
Sbjct:   653 ---LLEELERLENLEVLTIEIISSSALEQLLCSHRLVRCLQKVSVKY--LDEESVRILTL 707

Query:   412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQN 470
               + +L+E+ +  C + ++ I   E    L    F NL+ V++  C G KDLTWL+F  N
Sbjct:   708 PSIGDLREVFIGGCGMRDIII---ERNTSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPN 764

Query:   471 LKQLNM-QGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFP 529
             L  LN+     +EEIIS EK S  ++++      F +LEYL +W    LKS+Y NP PFP
Sbjct:   765 LTHLNVWNSRQIEEIISQEKAST-ADIVP-----FRKLEYLHLWDLPELKSIYWNPLPFP 818

Query:   530 KLKKIQAFH-CRQL 542
              L +I   + CR+L
Sbjct:   819 CLNQINVQNKCRKL 832

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 206/552 (37%), Positives = 301/552 (54%)

Query:     6 LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRK 65
             +E+  L    AW+L ++ V  +TL SH  IP+LA  ++ +C GLPLAL ++G  M  +R 
Sbjct:   308 MEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETMSFKRT 367

Query:    66 VGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKR 125
             + +W+ A  ++ TSA+ FSGM++E+   LK+SYDSL+ ++ +SC LYC L+PED+EI K 
Sbjct:   368 IQEWRHA-TEVLTSATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKE 426

Query:   126 ELIDYWISEGFVYXXXXXXXXXX-------XLLQACLLEEEGDDH--VKMHDMIREMSLW 176
              LI+YWI EGF+                   L+++ LL E   D   V MHDM+REM+LW
Sbjct:   427 MLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALW 486

Query:   177 IACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLD 236
             I   + K ++  +V+AG+ L E P+VE W   KR+SL  N    +   P C  L+TL L 
Sbjct:   487 IFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQ 546

Query:   237 GN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL 295
              N ++ +I+  FF+ + +L VL L  N   S LP  IS LVSL +LDLS T I  LP  L
Sbjct:   547 NNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGL 606

Query:   296 KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPL 355
               L KL +L L+    L  I    IS  S L  LRL           ++     D    L
Sbjct:   607 HELRKLVHLKLERTRRLESISG--ISYLSSLRTLRL-----------RDSKTTLDTG--L 651

Query:   356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPP--FNVLHLAY 413
             MKEL  L+HL +++    S L  + F  YP++    Q +++    + RP     VL L  
Sbjct:   652 MKELQLLEHLELITTDISSGLVGELFC-YPRVGRCIQHIYIR-DHWERPEESVGVLVLPA 709

Query:   414 MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLK 472
             + NL  + + +C + E+ I+ T   K L    F NL+ V +  C G KDLTWL+F  NL 
Sbjct:   710 IHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLI 769

Query:   473 QLNMQGFT-MEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKL 531
              L + G   +E+IIS EK + + E    E   F +LE L +++ + LKS+Y N  PF +L
Sbjct:   770 NLRVWGCKHLEDIISKEKAASVLE---KEILPFQKLECLNLYQLSELKSIYWNALPFQRL 826

Query:   532 KKIQAFH-CRQL 542
             + +   + C +L
Sbjct:   827 RCLDILNNCPKL 838

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 202/555 (36%), Positives = 305/555 (54%)

Query:     2 DAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK 61
             D + ++V  L  + AWELF+  V  +TL S   I ELA  +A++C GLPLAL ++G  M 
Sbjct:   300 DHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMS 359

Query:    62 SQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYE 121
             S+  V +W+ AI+   TSA++FS M+ ++   LK+SYDSL  + ++SC LYC L+PED E
Sbjct:   360 SKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGE 419

Query:   122 IPKRELIDYWISEGFV-------YXXXXXXXXXXXLLQACLLEEEGDDHVKMHDMIREMS 174
             I   +LIDYWI EGF+                   L +A LL + G  +  MHD++REM+
Sbjct:   420 IYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTYYCVMHDVVREMA 479

Query:   175 LWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLL 234
             LWIA    K+++NF+V+AGV L E PKV++W   +++SL  N I  ++    C  L TL 
Sbjct:   480 LWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLF 539

Query:   235 LDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQE 294
             L  N+++ +   F + +  L VL L  N   + LP  ISGLVSL  LDLS+T I  +P  
Sbjct:   540 LQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIG 599

Query:   295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354
             LK L+KL +L+L Y   L  I    IS    L +LRL G    G     + +VL      
Sbjct:   600 LKELKKLTFLDLTYTDRLCSISG--ISRLLSLRLLRLLGSKVHG-----DASVL------ 646

Query:   355 LMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYM 414
               KEL  L++L  L+ +  + L +    +  KL+S   ++ +E G + + PF++  LA M
Sbjct:   647 --KELQQLQNLQELAITVSAEL-ISLDQRLAKLIS---NLCIE-G-FLQKPFDLSFLASM 698

Query:   415 ENLQELELESCNLEEMKIDSTEEVKKLFRNG-----FRNLNTVVLRSCRG-KDLTWLVFV 468
             ENL  L +E+    E+K   +E      R       F NL+ + +  C   KDLTW++F 
Sbjct:   699 ENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFA 758

Query:   469 QNLKQLNMQGFT-MEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQP 527
              NL  L ++    + EII+ EK ++++ +       F +LE+L ++    L+S+Y +P P
Sbjct:   759 PNLVVLLIEDSREVGEIINKEKATNLTSITP-----FLKLEWLILYNLPKLESIYWSPLP 813

Query:   528 FPKLKKIQAFHCRQL 542
             FP L  +   +C +L
Sbjct:   814 FPVLLTMDVSNCPKL 828

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 205/555 (36%), Positives = 303/555 (54%)

Query:     2 DAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK 61
             D + ++V  L  + AWELF+  V  +TL S   I ELA  +A++C GLPLAL ++G  M 
Sbjct:   189 DHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETMA 248

Query:    62 SQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYE 121
             S+  V +W+ AI+ +  SA++FS M  ++   LK+SYDSL  + ++SC LYC L+PED E
Sbjct:   249 SKTMVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPEDDE 308

Query:   122 IPKRELIDYWISEGFV-------YXXXXXXXXXXXLLQACLLEEEGDDHVKMHDMIREMS 174
             I   +LIDYWI EGF+                   L  A LL + G +HV MHD++REM+
Sbjct:   309 IYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGTLTLANLLTKVGTEHVVMHDVVREMA 368

Query:   175 LWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLL 234
             LWIA    K+++NF+VRA V L E P+ ++W   +R+SL  N I  ++    C  L TL 
Sbjct:   369 LWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCSELTTLF 428

Query:   235 LDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQE 294
             L  N+++ ++  F + +  L VL L  N   + LP  ISGLVSL  LDLS+T I  LP  
Sbjct:   429 LQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVG 488

Query:   295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354
             LK L+KL +LNL Y   L  I    IS    L +LRL G    G     + +VL      
Sbjct:   489 LKKLKKLTFLNLAYTVRLCSISG--ISRLLSLRLLRLLGSKVHG-----DASVL------ 535

Query:   355 LMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYM 414
               KEL  L++L  L+ +  + L++ + L    L+SI   + +E G + + PF++  LA M
Sbjct:   536 --KELQKLQNLQHLAITLSAELSLNQRLA--NLISI---LGIE-G-FLQKPFDLSFLASM 586

Query:   415 ENLQELELESCNLEEMKIDSTEEVKKLFRNG-----FRNLNTVVLRSCRG-KDLTWLVFV 468
             ENL  L +++    E+K   +E      R       F NL+ + L  C   KDLTW++F 
Sbjct:   587 ENLSSLWVKNSYFSEIKCRESETASSYLRINPKIPCFTNLSRLGLSKCHSIKDLTWILFA 646

Query:   469 QNLKQLNMQGFT-MEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQP 527
              NL  L ++    + EII+ EK ++++ +       F +LE L ++    L+S+Y +P  
Sbjct:   647 PNLVYLYIEDSREVGEIINKEKATNLTSITP-----FLKLERLILYNLPKLESIYWSPLH 701

Query:   528 FPKLKKIQAFHCRQL 542
             FP+L  I    C +L
Sbjct:   702 FPRLLIIHVLDCPKL 716

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 198/557 (35%), Positives = 307/557 (55%)

Query:     1 MDAEK-LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA 59
             M A+K ++V  L+ D+AWELF+  V    L SH  IP LA  +A +C GLPLAL ++G+A
Sbjct:   297 MKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 356

Query:    60 MKSQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPED 119
             M  +  V +W+ AIN + +   KF GM+E +   LKFSYDSL   E++ C LYC L+PED
Sbjct:   357 MVCKETVQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPED 416

Query:   120 YEIPKRELIDYWISEGFV----YXXXXXXXXXXX---LLQACLLEE-EGDDHVKMHDMIR 171
             +EI K +LI+YWI EG++    Y              L++A LL E E  D VKMHD+IR
Sbjct:   417 FEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDVIR 476

Query:   172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
             EM+LWI      +++   V++G  +   P    WE  +++SL +  +  ++  P CP L 
Sbjct:   477 EMALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSLISTQVEKIACSPNCPNLS 536

Query:   232 TLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGL 291
             TLLL  N++ +I+ GFF  +  L VL L  N+    LP  IS L SL +L+LS T I  L
Sbjct:   537 TLLLPYNKLVDISVGFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLSLTGIKSL 596

Query:   292 PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351
             P  LK L KL YLNL++   L  +   + +    L+VL+L     F        ++ C  
Sbjct:   597 PVGLKKLRKLIYLNLEFTNVLESLVG-IATTLPNLQVLKL-----FY-------SLFCVD 643

Query:   352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL 411
              + +M+EL  LKHL +L+ +   ++ +++     +L S  + +   C      P  +L+ 
Sbjct:   644 -DIIMEELQRLKHLKILTATIEDAMILERVQGVDRLASSIRGL---CLRNMSAPRVILNS 699

Query:   412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRN----GFRNLNTVVLRSCRG-KDLTWLV 466
               +  LQ+L + SCN+ E++ID   + ++  R+    GF+ L ++ +    G +DL+WL+
Sbjct:   700 VALGGLQQLGIVSCNISEIEIDWLSKERRDHRSTSSPGFKQLASITVIGLVGPRDLSWLL 759

Query:   467 FVQNLKQLNMQ-GFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP 525
             F QNLK + +Q   T+EEII+ +K   I++V       F +LE L +++   L  +  N 
Sbjct:   760 FAQNLKDIQVQYSPTIEEIINKQKGMSITKVHRDIVVPFGKLESLHLYQLAELTEICWNY 819

Query:   526 QPFPKLKKIQAFHCRQL 542
             Q  P L++    +C +L
Sbjct:   820 QTLPNLRESYVNYCPKL 836

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	542
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	9e-34
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  129 bits (326), Expect = 9e-34
 Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 2/139 (1%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           +  EV SL  +++WELF   V    L     + E+A+ +  +C GLPLALK++G  +  +
Sbjct: 149 KPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFK 208

Query: 64  RKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIP 123
             V +W+  + ++    +   G+  EV S L  SYD+L    L+ C LY  L+PEDY I 
Sbjct: 209 STVQEWEHVLEQLNNELAGRDGL-NEVLSILSLSYDNLP-MHLKRCFLYLALFPEDYNIR 266

Query: 124 KRELIDYWISEGFVYDFDD 142
           K +LI  WI+EGFV   D 
Sbjct: 267 KEQLIKLWIAEGFVIPSDI 285

Length = 285

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 27/60 (45%), Positives = 33/60 (55%)

Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288
            L +L L  NR+  I DG F+ L  L+VL L GN   S  P   SGL SL  LDLS  ++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 80/326 (24%), Positives = 134/326 (41%), Gaps = 45/326 (13%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS-TDI 288
           LV L + G+++E++ DG   SL+ LR + LRG+     +P  +S   +L  L LS  + +
Sbjct: 613 LVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL 670

Query: 289 TGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV- 347
             LP  ++ L KL  L++    +L I+P  +      L  L L GC R         N+ 
Sbjct: 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNIS 728

Query: 348 LCDGAEPLMKEL---LGLKHLNVLSWSFGSS--LAVQKFLKYPKLV----SITQSVWVEC 398
             D  E  ++E    L L++L+ L      S  L  +     P +     S+T+    + 
Sbjct: 729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788

Query: 399 GTYTRPPFNVLHLAYMENLQELELESC-NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC 457
            +    P ++ +L     L+ LE+E+C NLE +                 +L ++ L  C
Sbjct: 789 PSLVELPSSIQNL---HKLEHLEIENCINLETLPTGIN----------LESLESLDLSGC 835

Query: 458 RGKDLTWLVFVQNLKQLNMQGFTMEEI-ISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516
             +  T+     N+  LN+    +EE+   +EK S               L +L M    
Sbjct: 836 -SRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFS--------------NLSFLDMNGCN 880

Query: 517 NLKSVYPNPQPFPKLKKIQAFHCRQL 542
           NL+ V  N      L+ +    C  L
Sbjct: 881 NLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 36/100 (36%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 209 KRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267
           K + L+ N I SL S +   P L  L L  N + ++       LS L  L L GN   S 
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN-LSNLNNLDLSGN-KISD 200

Query: 268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
           LP  I  L +L  LDLS+  I  L   L  L+ L  L L 
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 228 PRLVTLLLDGNRIE-EITD--GFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS 284
           P L TL L  N +  EI +  G F   S+L+VL L GN     +P+ ++ L SL  L L+
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSF---SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 285 STDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQL 319
           S  + G +P+EL  ++ L+++ L Y      IP+++
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 228 PRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286
           P + T+ L  N++   I D  F + S+LR L+L  N    ++P G   + +L  LDLS+ 
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNN 150

Query: 287 DITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
            ++G +P ++ +   L+ L+L     +  IP+ L +  + LE L L
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTL 195

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 209 KRISLTANGIGSLSEIP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
           K + L+ N +  + +      P L  L L GN +  I+   F  L +LR L L GN
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 212 SLTANGIGSLSEIPTC---PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           SL  N     S I        L +L LD N I +I        S L+ L L  N    +L
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESL 155

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
           PS +  L +L +LDLS  D++ LP+ L  L  L  L+L 
Sbjct: 156 PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 277 SLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           +L  LDLS+  +T +P    K L  L+ L+L    +L+ I  +  S    L  L L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSG-NNLTSISPEAFSGLPSLRSLDL 55

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	542
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.52
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.47
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.44
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.42
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.65
PLN03150	623	hypothetical protein; Provisional	98.57
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.56
KOG4341	483	consensus F-box protein containing LRR [General fu	98.53
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.49
KOG4341	483	consensus F-box protein containing LRR [General fu	98.46
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
PLN03150	623	hypothetical protein; Provisional	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.83
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.8
PRK04841	903	transcriptional regulator MalT; Provisional	94.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.45
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.72
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	90.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.57
smart00370	26	LRR Leucine-rich repeats, outliers.	90.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.01
smart00370	26	LRR Leucine-rich repeats, outliers.	87.01
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.15
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	84.95
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	83.96

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-64  Score=540.36  Aligned_cols=515  Identities=41%  Similarity=0.666  Sum_probs=415.1

Q ss_pred             CCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcc-cC
Q 037847            3 AEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTS-AS   81 (542)
Q Consensus         3 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~-~~   81 (542)
                      ...+++++|.++|||+||++.||......++.+.++|++||++|+|+|||++++|+.|+.|.+.++|+++.+.+.+. ..
T Consensus       309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~  388 (889)
T KOG4658|consen  309 DYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAA  388 (889)
T ss_pred             CccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccC
Confidence            46799999999999999999999886667777999999999999999999999999999999999999999999887 45


Q ss_pred             CCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCcccc-------chhchHHHHHHHhc
Q 037847           82 KFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDF-------DDGCDFIDDLLQAC  154 (542)
Q Consensus        82 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~-------~~~~~~~~~L~~~~  154 (542)
                      ..+++.+.++++|++|||.||+ ++|.||+|||+||+||.|++++||.+||||||+.+.       ++|+.|+++|+.++
T Consensus       389 ~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~  467 (889)
T KOG4658|consen  389 DFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRAS  467 (889)
T ss_pred             CCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHH
Confidence            5567788999999999999996 999999999999999999999999999999999773       89999999999999


Q ss_pred             ccccc----CCCeEEeehHHHHHHHHHHcccCcccceEEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCc
Q 037847          155 LLEEE----GDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRL  230 (542)
Q Consensus       155 l~~~~----~~~~~~mhdl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L  230 (542)
                      ++..+    ....|+|||+++++|.+++.+....+++.++..+......|....+..+|++++.++.+..++.-..+++|
T Consensus       468 Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L  547 (889)
T KOG4658|consen  468 LLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKL  547 (889)
T ss_pred             HHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCcc
Confidence            99985    45899999999999999999877777777777776777789999999999999999999999888888899


Q ss_pred             cEEEccCcc--cccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccC
Q 037847          231 VTLLLDGNR--IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY  308 (542)
Q Consensus       231 ~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  308 (542)
                      ++|.+.+|.  +..++..+|..++.|++||+++|.....+|++|+.|.+||||+++++.++.+|.++++|++|.+|++..
T Consensus       548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence            999999996  777888889999999999999998999999999999999999999999999999999999999999999


Q ss_pred             CcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhh
Q 037847          309 AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV  388 (542)
Q Consensus       309 ~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~  388 (542)
                      +..+..+|. +...|++||+|.+.....             ......+.++..|++|+.+++........+.+..+..+.
T Consensus       628 ~~~l~~~~~-i~~~L~~Lr~L~l~~s~~-------------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  628 TGRLESIPG-ILLELQSLRVLRLPRSAL-------------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR  693 (889)
T ss_pred             ccccccccc-hhhhcccccEEEeecccc-------------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence            977777755 366799999999976542             335567888899999999999776665556677777777


Q ss_pred             ccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccc-cccccCEEEEccCCC-CCcchhh
Q 037847          389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN-GFRNLNTVVLRSCRG-KDLTWLV  466 (542)
Q Consensus       389 ~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~c~~-~~~~~l~  466 (542)
                      ...+.+.+.++   ......+.+..+.+|+.|.|.+|.+.+....+...   .... .|+++.++.+.+|.. ..+.|..
T Consensus       694 ~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~  767 (889)
T KOG4658|consen  694 SLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEES---LIVLLCFPNLSKVSILNCHMLRDLTWLL  767 (889)
T ss_pred             HHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhcccccc---cchhhhHHHHHHHHhhccccccccchhh
Confidence            77776665432   23445567788999999999999998754433221   1111 256777777777777 7777777


Q ss_pred             hccCcceEEEec-cchhhhcccccccccccccCCcCCCCCcccee-ecccCCcccccCCCCCCCCCcceEeeccCCC
Q 037847          467 FVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYL-TMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQ  541 (542)
Q Consensus       467 ~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~  541 (542)
                      ..|+|+.|.+.. ..+++++..+.......   .....|.++..+ .+.+.+.+.++.+.+..+++|+.+.+..||+
T Consensus       768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~  841 (889)
T KOG4658|consen  768 FAPHLTSLSLVSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK  841 (889)
T ss_pred             ccCcccEEEEecccccccCCCHHHHhhhcc---cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcc
Confidence            777888888877 55555443332211100   012345555555 3555555555544444445555555555554

>PLN03210 Resistant to P

Probab=100.00  E-value=3.7e-49  Score=443.95  Aligned_cols=494  Identities=22%  Similarity=0.308  Sum_probs=360.0

Q ss_pred             CCCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccC
Q 037847            2 DAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSAS   81 (542)
Q Consensus         2 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~   81 (542)
                      ++++|+++.|++++||+||+++||+.. .+++++++++++||++|+|+|||++++|+.|++ ++.++|+.+++++++.. 
T Consensus       342 ~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~-  418 (1153)
T PLN03210        342 IDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGL-  418 (1153)
T ss_pred             CCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCc-
Confidence            357899999999999999999999875 455679999999999999999999999999998 68899999999988754 


Q ss_pred             CCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccccccCC
Q 037847           82 KFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGD  161 (542)
Q Consensus        82 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~~~~~~  161 (542)
                           +.+|+++|++||++|+++..|.||+++|+||.+..++.   +..|+|.+.+.. +.|   ++.|++++|++.. .
T Consensus       419 -----~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~-~~~---l~~L~~ksLi~~~-~  485 (1153)
T PLN03210        419 -----DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDV-NIG---LKNLVDKSLIHVR-E  485 (1153)
T ss_pred             -----cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCc-hhC---hHHHHhcCCEEEc-C
Confidence                 33899999999999987458999999999999976543   778888775543 233   8999999999985 4


Q ss_pred             CeEEeehHHHHHHHHHHcccC--cccceEEEecCcc----------------------ccc--C--Cccccc--------
Q 037847          162 DHVKMHDMIREMSLWIACTVD--KEEQNFLVRAGVK----------------------LTE--A--PKVEEW--------  205 (542)
Q Consensus       162 ~~~~mhdl~~~~~~~i~~~~~--~~~~~~~~~~~~~----------------------~~~--~--~~~~~~--------  205 (542)
                      ..++|||++|++|+.+++.+.  +.++.+++.....                      ...  +  ..+..+        
T Consensus       486 ~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~  565 (1153)
T PLN03210        486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF  565 (1153)
T ss_pred             CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence            679999999999999987653  3333344322100                      000  0  001122        


Q ss_pred             -----------------------ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCC
Q 037847          206 -----------------------EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN  262 (542)
Q Consensus       206 -----------------------~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  262 (542)
                                             .+++.|.+.++.+..+|......+|+.|++.++.+..++.. +..+++|++|+++++
T Consensus       566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~  644 (1153)
T PLN03210        566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGS  644 (1153)
T ss_pred             ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCC
Confidence                                   23555666666666666555677888888888888777665 678899999999988


Q ss_pred             CCCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847          263 FPPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK  341 (542)
Q Consensus       263 ~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  341 (542)
                      ..+..+| .++.+++|++|++++| .+..+|..++++++|+.|++++|..+..+|.. + ++++|++|++++|...+.+|
T Consensus       645 ~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        645 KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc
Confidence            7778888 5888999999999987 67779999999999999999999888889875 3 78899999999998776666


Q ss_pred             CCCCcc-----ccCCCcchhHhhccccCCceeeeEecchHHHH-Hhh----cCchhhccceeEEeccccCCCCCceeccc
Q 037847          342 GKEGNV-----LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQ-KFL----KYPKLVSITQSVWVECGTYTRPPFNVLHL  411 (542)
Q Consensus       342 ~~~~~~-----~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~-~l~----~~~~~~~~l~~l~l~~~~~~~~~~~~~~l  411 (542)
                      ....+.     ........+. ...+++|..|.+......... .+.    ........++.|++.++..  .......+
T Consensus       722 ~~~~nL~~L~L~~n~i~~lP~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~--l~~lP~si  798 (1153)
T PLN03210        722 DISTNISWLDLDETAIEEFPS-NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS--LVELPSSI  798 (1153)
T ss_pred             cccCCcCeeecCCCccccccc-cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC--ccccChhh
Confidence            432211     0011011111 113445555554432110000 000    0011234567777766542  11122346


Q ss_pred             ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccc
Q 037847          412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKL  490 (542)
Q Consensus       412 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~  490 (542)
                      ..+++|+.|++++|...+..+..         ..+++|+.|++++|.. ..++.+  .++|++|+|++|.+++++.    
T Consensus       799 ~~L~~L~~L~Ls~C~~L~~LP~~---------~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~----  863 (1153)
T PLN03210        799 QNLHKLEHLEIENCINLETLPTG---------INLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPW----  863 (1153)
T ss_pred             hCCCCCCEEECCCCCCcCeeCCC---------CCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChH----
Confidence            77889999999988654422211         1378899999999877 544432  4789999999988887754    


Q ss_pred             cccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCCCC
Q 037847          491 SDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL  542 (542)
Q Consensus       491 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~L  542 (542)
                               ....+++|+.|++.+|++++.++.....+++|+.+++++|++|
T Consensus       864 ---------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        864 ---------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             ---------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence                     6778999999999999999999988888999999999999876

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=1.7e-22  Score=228.07  Aligned_cols=137  Identities=28%  Similarity=0.391  Sum_probs=78.1

Q ss_pred             ccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847          204 EWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL  283 (542)
Q Consensus       204 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l  283 (542)
                      .+.++++|++.+|.+........+++|++|++++|.+....+..++.+++|++|++++|.....+|..++++.+|++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence            44556666666665543222344556666666666554433434566666666666666444455666666666666666


Q ss_pred             cCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847          284 SSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK  341 (542)
Q Consensus       284 ~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  341 (542)
                      ++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+.+|
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccC
Confidence            6665543 5666666666666666666444455554 5666666666666665544333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=6.7e-22  Score=223.28  Aligned_cols=320  Identities=17%  Similarity=0.165  Sum_probs=188.3

Q ss_pred             cccccceEEEeecCCcCC-CC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          203 EEWEGAKRISLTANGIGS-LS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       203 ~~~~~l~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      ..+.+++.|++.+|.+.. +| .+.++++|++|++++|.+....+..++++++|++|++++|.....+|..++.+.+|++
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            345778888888887763 34 4778888888888888776555555788888888888888666677888888888888


Q ss_pred             EeccCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc--------c-cC
Q 037847          281 LDLSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV--------L-CD  350 (542)
Q Consensus       281 L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~-~~  350 (542)
                      |++++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+.+|....+.        . +.
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            8888887764 7888888888888888888655567765 7888888888888887766554322110        0 01


Q ss_pred             CCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccce
Q 037847          351 GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEM  430 (542)
Q Consensus       351 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  430 (542)
                      .....+..+.++++|+.|+++.+.....  ........+.++.+.+.++...  ......+..+++|+.|++++|.+...
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFS--GEIPKNLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCc--CcCChHHhCCCCCcEEECCCCeeEee
Confidence            1112233345556666666554432110  0011111234455555544321  11122345566677777777666542


Q ss_pred             eeccchhhc--------------cc--ccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccc
Q 037847          431 KIDSTEEVK--------------KL--FRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSD  492 (542)
Q Consensus       431 ~~~~~~~~~--------------~~--~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~  492 (542)
                      .+..+....              ..  ....+++|+.|++++|.+  ..+..+..+++|+.|++++|.+.....      
T Consensus       372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~------  445 (968)
T PLN00113        372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN------  445 (968)
T ss_pred             CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC------
Confidence            222211100              00  012244555555555555  333334555555555555555443321      


Q ss_pred             cccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847          493 ISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       493 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                            .....+++|+.|++.+|.-...++.. ...++|+.|++++|.
T Consensus       446 ------~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~  486 (968)
T PLN00113        446 ------SRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQ  486 (968)
T ss_pred             ------hhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCc
Confidence                  23345677777777776544444332 234777777777764

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.85  E-value=3.5e-22  Score=193.51  Aligned_cols=136  Identities=36%  Similarity=0.743  Sum_probs=113.8

Q ss_pred             CCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCC
Q 037847            3 AEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASK   82 (542)
Q Consensus         3 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~   82 (542)
                      ..+|+|++|+++||++||++.++......++.+.+++++|+++|+|+||||+++|++|+.+.+.++|+.+++.+......
T Consensus       149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~  228 (287)
T PF00931_consen  149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE  228 (287)
T ss_dssp             EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            35799999999999999999998665334566788999999999999999999999997766889999999988887655


Q ss_pred             CCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccc
Q 037847           83 FSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYD  139 (542)
Q Consensus        83 ~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~  139 (542)
                      ..+....++.++.+||+.||+ ++|+||+|||+||+++.|+++.|+++|+++|++..
T Consensus       229 ~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  229 SRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             SSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             cccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence            444556899999999999999 89999999999999999999999999999999875

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=2.4e-23  Score=203.65  Aligned_cols=319  Identities=19%  Similarity=0.238  Sum_probs=215.4

Q ss_pred             eEEEecCcccccCCc-ccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcccc--cccchhhccCCCccEEEecCC
Q 037847          187 NFLVRAGVKLTEAPK-VEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGN  262 (542)
Q Consensus       187 ~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~  262 (542)
                      .++..+..++..+|. +..+.++.+|++.+|.+..+. ++..++.||++++..|++.  .+|+. +-.+..|++|||++|
T Consensus        35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN  113 (1255)
T KOG0444|consen   35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN  113 (1255)
T ss_pred             eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence            455556666667765 456778889999988887764 5788889999999888774  56666 557888999999999


Q ss_pred             CCCCcCccccCCCCCCCEEeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847          263 FPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK  341 (542)
Q Consensus       263 ~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  341 (542)
                       .+.+.|..+.+.+++-.|+|++|+|..+|..+ -+|+.|-+||+++| .+..+|+. +.+|..|++|.+++|++.-   
T Consensus       114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h---  187 (1255)
T KOG0444|consen  114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH---  187 (1255)
T ss_pred             -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH---
Confidence             78888988888899999999999999988764 57888899999988 78888887 8889999999998887531   


Q ss_pred             CCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceee
Q 037847          342 GKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  421 (542)
Q Consensus       342 ~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~  421 (542)
                                  ..+.++.++++|++|.++.... ....++....-..++..++++..+.   +.....+-++++|+.|+
T Consensus       188 ------------fQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~L---p~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  188 ------------FQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNL---PIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             ------------HHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCC---CcchHHHhhhhhhheec
Confidence                        4556667777777777775432 2233333333334445555544432   22223455677888888


Q ss_pred             ecccCccceeeccchh------------hccccc--ccccccCEEEEccCCC---CCcchhhhccCcceEEEeccchhhh
Q 037847          422 LESCNLEEMKIDSTEE------------VKKLFR--NGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       422 l~~~~~~~~~~~~~~~------------~~~~~~--~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                      +++|.++++......-            .+.+|.  -.+++|++|.+.+|++   ..|..++.+..|+.+...+|.++-+
T Consensus       252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV  331 (1255)
T KOG0444|consen  252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV  331 (1255)
T ss_pred             cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence            8888887754321110            000000  1234455555555544   2223355555555555555554443


Q ss_pred             cccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCCCC
Q 037847          485 ISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL  542 (542)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~L  542 (542)
                                   |+.+..+++|+.|.+.. ..|-.+|..+--+|-|+.|+++.-|+|
T Consensus       332 -------------PEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  332 -------------PEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             -------------chhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence                         45777888888888865 567777777777899999999888775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=7.3e-21  Score=185.19  Aligned_cols=307  Identities=21%  Similarity=0.210  Sum_probs=203.6

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCC-CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCC
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCP-RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLH  279 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~  279 (542)
                      +..+.+++.+++..|.++.+|.++... ++..|++..|.+..+..+.++.++.||.|||+.| .+..+|. +|..-.+++
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK  176 (873)
T ss_pred             HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence            456677788888888888888776554 4888888888877777777888888888888888 6766653 455557888


Q ss_pred             EEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847          280 HLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE  358 (542)
Q Consensus       280 ~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (542)
                      +|+|++|+|+.+- ..+..+.+|.+|.+++| .++.+|...+.+|++|+.|++..|.+.-.               .-..
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv---------------e~lt  240 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV---------------EGLT  240 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee---------------hhhh
Confidence            8888888888764 34677788888888888 67788877777888888888888775311               0122


Q ss_pred             hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847          359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV  438 (542)
Q Consensus       359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  438 (542)
                      +++|.+|+.+.+.-++.....+  ...--+..++.+++.....  ..+....+-+++.|+.|+++.|.+..+.++...  
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~l--~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--  314 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNRL--QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--  314 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccC--cceeeecccceeecccchh--hhhhcccccccchhhhhccchhhhheeecchhh--
Confidence            4555666666665544332221  1111123345555544331  222334566788999999999998887765543  


Q ss_pred             cccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccc--cc-------------ccccCCcC
Q 037847          439 KKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS--DI-------------SEVIGSEH  501 (542)
Q Consensus       439 ~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~--~~-------------~~~~~~~~  501 (542)
                            ..++|+.|+|++|.+  -....+..+..|++|.|++|++..+....+.+  ++             .|+-....
T Consensus       315 ------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  315 ------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF  388 (873)
T ss_pred             ------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence                  378899999998888  33334667788888888888777664432211  00             00001234


Q ss_pred             CCCCccceeecccCCcccccCCC-CCCCCCcceEeecc
Q 037847          502 NFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAFH  538 (542)
Q Consensus       502 ~~~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~~  538 (542)
                      .++++|+.|.+.+ .++++++.. ...+++|++|++.+
T Consensus       389 ~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  389 NGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             ccchhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence            4578888888877 467777653 44578888888754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=3.2e-20  Score=180.71  Aligned_cols=320  Identities=23%  Similarity=0.260  Sum_probs=185.7

Q ss_pred             EecCcccccCCcccccc-cceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847          190 VRAGVKLTEAPKVEEWE-GAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS  266 (542)
Q Consensus       190 ~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  266 (542)
                      ....+.+..+|.+.... ++.+|++.+|.|..+.  ++..++.||+|+++.|.++.++...|..-.++++|+|++| .++
T Consensus       108 ~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It  186 (873)
T KOG4194|consen  108 NLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RIT  186 (873)
T ss_pred             eeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-ccc
Confidence            33445566677665543 4777888877777664  3566677777777777776666555666667777777777 333


Q ss_pred             cC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCC
Q 037847          267 TL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKE  344 (542)
Q Consensus       267 ~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~  344 (542)
                      .+ -..|..+.+|-+|.|++|+++.+|.- +.+|++|+.|++..| .++.+..-.+..|++|+.|.+..|.+...--+.+
T Consensus       187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F  265 (873)
T KOG4194|consen  187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF  265 (873)
T ss_pred             ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence            33 33556666777777777777776644 334777777777666 3333322225555555555555554432100000


Q ss_pred             C--------ccc-cCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccccccc
Q 037847          345 G--------NVL-CDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYME  415 (542)
Q Consensus       345 ~--------~~~-~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~  415 (542)
                      -        +.. .....-.-+.+-+|+.|+.|+++++......  .+.=.....++.|.++...  ....+..++..+.
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~--i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNR--ITRLDEGSFRVLS  341 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheee--cchhhhcccceeEeccccc--cccCChhHHHHHH
Confidence            0        000 0000001122456666777777766532111  0111223444555554443  2233344566667


Q ss_pred             ccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-----CCcchhhhccCcceEEEeccchhhhcccccc
Q 037847          416 NLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-----KDLTWLVFVQNLKQLNMQGFTMEEIISVEKL  490 (542)
Q Consensus       416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-----~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~  490 (542)
                      .|++|.+++|.+..+.-..+        ..+.+|++|+|++|.+     ..-..+..+++|+.|.+.+|+++.++..   
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af--------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr---  410 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAF--------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR---  410 (873)
T ss_pred             HhhhhcccccchHHHHhhHH--------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh---
Confidence            77777777777665432222        2378999999999887     2223466799999999999999998753   


Q ss_pred             cccccccCCcCCCCCccceeecccCCcccccCCC-CCCCCCcceEeec
Q 037847          491 SDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAF  537 (542)
Q Consensus       491 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~  537 (542)
                               ...+|++|++|++.+.+ +.++-+. ...| .|++|.+.
T Consensus       411 ---------Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  411 ---------AFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ---------hhccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence                     56679999999998854 5554332 3334 66666554

>PLN03210 Resistant to P

Probab=99.79  E-value=3.5e-18  Score=193.59  Aligned_cols=320  Identities=21%  Similarity=0.199  Sum_probs=227.7

Q ss_pred             ceEEEecCcccccCCcccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcc-cccccchhhccCCCccEEEecCCC
Q 037847          186 QNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNR-IEEITDGFFQSLSTLRVLSLRGNF  263 (542)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~  263 (542)
                      ...+...+.....+|......+++.|++.++.+..++ .+..+++|+.|+++++. +..++.  ++.+++|+.|++++|.
T Consensus       591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCS  668 (1153)
T ss_pred             cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCC
Confidence            3444455556666776666789999999999998875 47789999999999874 555554  7889999999999998


Q ss_pred             CCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccC
Q 037847          264 PPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKG  342 (542)
Q Consensus       264 ~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~  342 (542)
                      .+..+|.+++++.+|++|++++| .++.+|..+ ++++|++|++++|..+..+|..    .++|+.|++.++.+. .+|.
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~  742 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPS  742 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccc
Confidence            89999999999999999999997 788899876 8999999999999888787752    467889999888754 3443


Q ss_pred             CCC--cc----ccC-CCcch--------hHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCce
Q 037847          343 KEG--NV----LCD-GAEPL--------MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN  407 (542)
Q Consensus       343 ~~~--~~----~~~-~~~~~--------~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~  407 (542)
                      ...  +.    .+. .....        .......++|+.|+++.+...  ..++....-...++.|++.+|....   .
T Consensus       743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l--~~lP~si~~L~~L~~L~Ls~C~~L~---~  817 (1153)
T PLN03210        743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL--VELPSSIQNLHKLEHLEIENCINLE---T  817 (1153)
T ss_pred             cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc--cccChhhhCCCCCCEEECCCCCCcC---e
Confidence            211  00    000 00000        000112356777777655321  1122222334567888887765311   1


Q ss_pred             ecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEec-cchhhhc
Q 037847          408 VLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQG-FTMEEII  485 (542)
Q Consensus       408 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~-~~l~~~~  485 (542)
                      ......+++|++|++++|......+           ....+|+.|+|+++.+ ..+.++..+++|+.|+|++ +.++.++
T Consensus       818 LP~~~~L~sL~~L~Ls~c~~L~~~p-----------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        818 LPTGINLESLESLDLSGCSRLRTFP-----------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             eCCCCCccccCEEECCCCCcccccc-----------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence            1112257899999999997654211           1257899999999999 7777899999999999999 8888775


Q ss_pred             ccccccccccccCCcCCCCCccceeecccCCcccccCCCC-------------CCCCCcceEeeccCCCC
Q 037847          486 SVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP-------------QPFPKLKKIQAFHCRQL  542 (542)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------------~~~p~L~~L~i~~C~~L  542 (542)
                      .             ....+++|+.|.+.+|+++.+++...             ..+|+...+.+.+|.+|
T Consensus       887 ~-------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L  943 (1153)
T PLN03210        887 L-------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL  943 (1153)
T ss_pred             c-------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCC
Confidence            4             56678999999999999998764321             13555666778888765

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=3.1e-20  Score=182.10  Aligned_cols=286  Identities=17%  Similarity=0.158  Sum_probs=189.4

Q ss_pred             ccccceEEEeecCCcCC--CC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccC-CCCCCC
Q 037847          204 EWEGAKRISLTANGIGS--LS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGIS-GLVSLH  279 (542)
Q Consensus       204 ~~~~l~~l~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~-~l~~L~  279 (542)
                      .++.+|.+.+..|+++.  +| ++..+..|.+|+++.|.+...|.. +...+++-+|+|++| .+..+|.++. ++..|-
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLL  153 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHh
Confidence            34456666666666543  33 466777777777777777777665 677777777777777 6777776543 677777


Q ss_pred             EEeccCCCCCcccHHhhcCCCCCEEeccCCcc----cCccchhhcCCCCCCcEEeccCccccc-cccCCCC--------c
Q 037847          280 HLDLSSTDITGLPQELKALEKLRYLNLDYAFH----LSIIPHQLISCFSKLEVLRLCGCGRFG-VIKGKEG--------N  346 (542)
Q Consensus       280 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~----~~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~--------~  346 (542)
                      +|||++|++..+|+.+..|.+|++|++++|..    +..+|     .|++|+.|++++.+.+- .+|....        +
T Consensus       154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-----cchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence            77777777777777777777777777777742    22333     35667777776665432 2333221        1


Q ss_pred             cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccC
Q 037847          347 VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCN  426 (542)
Q Consensus       347 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  426 (542)
                      .+++..+..+..+-++.+|+.|+++.+...   .+........++++|+++....   ......+.+++.|+.|.+.+|.
T Consensus       229 lS~N~Lp~vPecly~l~~LrrLNLS~N~it---eL~~~~~~W~~lEtLNlSrNQL---t~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  229 LSENNLPIVPECLYKLRNLRRLNLSGNKIT---ELNMTEGEWENLETLNLSRNQL---TVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             ccccCCCcchHHHhhhhhhheeccCcCcee---eeeccHHHHhhhhhhccccchh---ccchHHHhhhHHHHHHHhccCc
Confidence            233444456666677777777777755422   2222333445566666655443   1122345567777888777776


Q ss_pred             ccce-eeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCC
Q 037847          427 LEEM-KIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFF  504 (542)
Q Consensus       427 ~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~  504 (542)
                      +.-. .+.+        ++.+.+|+.+..++|.+ -.|..+..+++|+.|.|+.|.+..++.             .+..+
T Consensus       303 L~FeGiPSG--------IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPe-------------aIHlL  361 (1255)
T KOG0444|consen  303 LTFEGIPSG--------IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPE-------------AIHLL  361 (1255)
T ss_pred             ccccCCccc--------hhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechh-------------hhhhc
Confidence            6431 1122        24488999999999999 777779999999999999999988854             78889


Q ss_pred             CccceeecccCCcccccCC
Q 037847          505 PRLEYLTMWRGTNLKSVYP  523 (542)
Q Consensus       505 ~~L~~L~l~~c~~l~~~~~  523 (542)
                      +.|+.|++...|+|.-=|.
T Consensus       362 ~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CCcceeeccCCcCccCCCC
Confidence            9999999999998865433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.75  E-value=3.5e-20  Score=172.87  Aligned_cols=312  Identities=23%  Similarity=0.256  Sum_probs=158.2

Q ss_pred             cccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          201 KVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       201 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      +..+++.+..++++.|++..+|+|.+|+.|..|.+..|.++.++....+.+.++.+||++.| .++++|+.++.+.+|.+
T Consensus       201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~r  279 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLER  279 (565)
T ss_pred             hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhh
Confidence            45556666666777777777777777777777777777666666665556777777777777 66777777777777777


Q ss_pred             EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCC--CCcEEec-cCccccccccCCCCccc-cCCCcchh
Q 037847          281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS--KLEVLRL-CGCGRFGVIKGKEGNVL-CDGAEPLM  356 (542)
Q Consensus       281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~--~L~~L~l-~~~~~~~~~~~~~~~~~-~~~~~~~~  356 (542)
                      ||+++|.|+.+|.+++++ +|+.|.+.+| -++.+-.+++.+-+  -|++|+- ..|...+. + ..+... ........
T Consensus       280 LDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~-s-e~~~e~~~t~~~~~~  355 (565)
T KOG0472|consen  280 LDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ-S-EGGTETAMTLPSESF  355 (565)
T ss_pred             hcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCC-C-cccccccCCCCCCcc
Confidence            777777777777777777 7777777776 33434333222211  0122211 00000000 0 000000 01111222


Q ss_pred             HhhccccCCceeeeEecchHH-HHHhhcCchhhccceeEEeccccC---------------------CCCCceecccccc
Q 037847          357 KELLGLKHLNVLSWSFGSSLA-VQKFLKYPKLVSITQSVWVECGTY---------------------TRPPFNVLHLAYM  414 (542)
Q Consensus       357 ~~l~~L~~L~~l~~~~~~~~~-~~~l~~~~~~~~~l~~l~l~~~~~---------------------~~~~~~~~~l~~l  414 (542)
                      .....+.+.+.|+++...... ..+.++..+ .....+.+++....                     ....+....+..+
T Consensus       356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l  434 (565)
T KOG0472|consen  356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL  434 (565)
T ss_pred             cchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence            233444555556555332110 001111100 00111122211110                     0111111223334


Q ss_pred             cccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhccccccccc
Q 037847          415 ENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDI  493 (542)
Q Consensus       415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  493 (542)
                      ++|..|++++|.+..+|.+...         +..|+.|+++.|.+ ..|..+..+.-|+.+-.++|++..++        
T Consensus       435 ~kLt~L~L~NN~Ln~LP~e~~~---------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd--------  497 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLNDLPEEMGS---------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD--------  497 (565)
T ss_pred             hcceeeecccchhhhcchhhhh---------hhhhheecccccccccchHHHhhHHHHHHHHhccccccccC--------
Confidence            4444444444444444333222         33344444444444 22222333333333333334444433        


Q ss_pred             ccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847          494 SEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       494 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                          ++....+.+|..|++.+ ..++.+|+..+.|.+|++|++.|=|
T Consensus       498 ----~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  498 ----PSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             ----hHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence                23577899999999988 4799999999999999999998854

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.63  E-value=1.6e-18  Score=161.90  Aligned_cols=247  Identities=23%  Similarity=0.286  Sum_probs=147.8

Q ss_pred             ccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          202 VEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      ...+..+..+.+++|....+| .++.+..+..++.+.|.+..+|+. ++.+..|+.|+.+.| ...++|++|+.+..|..
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLED  141 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhh
Confidence            344456667777777776664 567777777777777777777766 667777888888777 67777778888888888


Q ss_pred             EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhc
Q 037847          281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL  360 (542)
Q Consensus       281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  360 (542)
                      ++..+|.++.+|..++++.+|..+++.+| .+..+|+..+. ++.|++|++..|-+.                ..+.+++
T Consensus       142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~----------------tlP~~lg  203 (565)
T KOG0472|consen  142 LDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE----------------TLPPELG  203 (565)
T ss_pred             hhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh----------------cCChhhc
Confidence            88878888888888888888888888777 56667766344 777888877665433                2334466


Q ss_pred             cccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcc
Q 037847          361 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKK  440 (542)
Q Consensus       361 ~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  440 (542)
                      .++.|..|.+.-+......++...    +.+..+++.....  .-........+++|..|++.+|++.++|.+...    
T Consensus       204 ~l~~L~~LyL~~Nki~~lPef~gc----s~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl----  273 (565)
T KOG0472|consen  204 GLESLELLYLRRNKIRFLPEFPGC----SLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL----  273 (565)
T ss_pred             chhhhHHHHhhhcccccCCCCCcc----HHHHHHHhcccHH--HhhHHHHhcccccceeeeccccccccCchHHHH----
Confidence            666666655554332211111110    1111111111100  000112233455666666666666655433321    


Q ss_pred             cccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhh
Q 037847          441 LFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       441 ~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                           +.+|.+|++++|.+ ..+..++++ +|+.|.+.+|.+..+
T Consensus       274 -----LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  274 -----LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             -----hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHH
Confidence                 45566666666666 555556666 666666666665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=1.1e-14  Score=154.01  Aligned_cols=252  Identities=21%  Similarity=0.185  Sum_probs=144.8

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST  267 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  267 (542)
                      .+......++.+|... ..+++.|++.+|.++.+|..  .++|++|++++|.++.+|..    .++|+.|++++| .+..
T Consensus       205 ~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~  276 (788)
T PRK15387        205 VLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTH  276 (788)
T ss_pred             EEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhh
Confidence            3444444555555422 24677777777777777653  46777777777777666532    356777777777 5566


Q ss_pred             CccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847          268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV  347 (542)
Q Consensus       268 lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  347 (542)
                      +|...   ..|+.|++++|.++.+|..   +++|+.|++++| .+..+|.. .   .+|+.|.+.+|.+.+ +|.     
T Consensus       277 Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~-LP~-----  339 (788)
T PRK15387        277 LPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTS-LPT-----  339 (788)
T ss_pred             hhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCcccc-ccc-----
Confidence            66422   4566777777777777653   456777777777 55556542 2   346666666665532 111     


Q ss_pred             ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847          348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL  427 (542)
Q Consensus       348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  427 (542)
                                 +  ..+|+.|+++.+....      .+.....+..|++.......    +..  .+.+|+.|++++|.+
T Consensus       340 -----------l--p~~Lq~LdLS~N~Ls~------LP~lp~~L~~L~Ls~N~L~~----LP~--l~~~L~~LdLs~N~L  394 (788)
T PRK15387        340 -----------L--PSGLQELSVSDNQLAS------LPTLPSELYKLWAYNNRLTS----LPA--LPSGLKELIVSGNRL  394 (788)
T ss_pred             -----------c--ccccceEecCCCccCC------CCCCCcccceehhhcccccc----Ccc--cccccceEEecCCcc
Confidence                       0  1356666666554321      11122344445444332111    111  124677777777776


Q ss_pred             cceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCcc
Q 037847          428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRL  507 (542)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  507 (542)
                      ..++.            .+++|+.|++++|.+..+|.+  +.+|+.|++++|.++.++.             ....+++|
T Consensus       395 t~LP~------------l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~-------------sl~~L~~L  447 (788)
T PRK15387        395 TSLPV------------LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPE-------------SLIHLSSE  447 (788)
T ss_pred             cCCCC------------cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccCh-------------HHhhccCC
Confidence            65331            135677778877777333322  3467777777777776643             55567778


Q ss_pred             ceeecccCC
Q 037847          508 EYLTMWRGT  516 (542)
Q Consensus       508 ~~L~l~~c~  516 (542)
                      +.|++.+++
T Consensus       448 ~~LdLs~N~  456 (788)
T PRK15387        448 TTVNLEGNP  456 (788)
T ss_pred             CeEECCCCC
Confidence            888887754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.52  E-value=2.7e-16  Score=130.39  Aligned_cols=159  Identities=27%  Similarity=0.399  Sum_probs=126.7

Q ss_pred             cccCCcccccccceEEEeecCCcCCC-CCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCC
Q 037847          196 LTEAPKVEEWEGAKRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG  274 (542)
Q Consensus       196 ~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~  274 (542)
                      ..+++.+..++++.++.+++|.+..+ |.+..+.+|++|.+++|+++.+|.+ ++.+++||.|++.-| .+..+|..||.
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs  100 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS  100 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence            34456666778888889999988877 4688888999999999988888877 888999999999888 67888889999


Q ss_pred             CCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCC
Q 037847          275 LVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGA  352 (542)
Q Consensus       275 l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  352 (542)
                      ++.|+.||+++|++.+  +|..+..++-|+.|.+++| ....+|.+ ++++++|+.|.+..|.+.               
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll---------------  163 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL---------------  163 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh---------------
Confidence            9999999998887765  8888888888888888888 56777877 788888888888877654               


Q ss_pred             cchhHhhccccCCceeeeEecc
Q 037847          353 EPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       353 ~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                       ..+.+++.|+.|+.|++..+.
T Consensus       164 -~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccce
Confidence             345566677777777666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.52  E-value=5.9e-14  Score=149.37  Aligned_cols=246  Identities=16%  Similarity=0.185  Sum_probs=132.6

Q ss_pred             ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC
Q 037847          208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~  287 (542)
                      ...+.+.++.+..+|... .++++.|++++|.++.+|...+   .+|++|++++| .+..+|..+.  .+|+.|++++|.
T Consensus       180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc
Confidence            345556655555555311 2456666666666666555422   35666666666 4556665443  356666666666


Q ss_pred             CCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCce
Q 037847          288 ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV  367 (542)
Q Consensus       288 i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~  367 (542)
                      +..+|..+.  .+|+.|++++| .+..+|.. +.  ++|+.|++++|.+.+ +|.           .    +.  .+|+.
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~-LP~-----------~----lp--~sL~~  308 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRT-LPA-----------H----LP--SGITH  308 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCcccc-Ccc-----------c----ch--hhHHH
Confidence            666666553  36666666665 45556654 22  356666666665442 111           0    00  12333


Q ss_pred             eeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccccc
Q 037847          368 LSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFR  447 (542)
Q Consensus       368 l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  447 (542)
                      |+++.+.....   ..  .....++.|.+.++..+..+   ..+  .++|+.|++++|.+..++.           ..++
T Consensus       309 L~Ls~N~Lt~L---P~--~l~~sL~~L~Ls~N~Lt~LP---~~l--~~sL~~L~Ls~N~L~~LP~-----------~lp~  367 (754)
T PRK15370        309 LNVQSNSLTAL---PE--TLPPGLKTLEAGENALTSLP---ASL--PPELQVLDVSKNQITVLPE-----------TLPP  367 (754)
T ss_pred             HHhcCCccccC---Cc--cccccceeccccCCccccCC---hhh--cCcccEEECCCCCCCcCCh-----------hhcC
Confidence            33333321110   00  01123444444443321111   111  2588888888888765432           1146


Q ss_pred             ccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          448 NLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       448 ~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                      +|+.|+|++|.+ ..++.+.  ++|+.|++++|.+..++..         .+.....++++..|.+.+.+
T Consensus       368 ~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s---------l~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        368 TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPES---------LPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchh---------HHHHhhcCCCccEEEeeCCC
Confidence            788888888888 4444432  4688888888888766431         01123345778888887754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=8.8e-16  Score=157.88  Aligned_cols=258  Identities=22%  Similarity=0.291  Sum_probs=125.9

Q ss_pred             cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847          207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST  286 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~  286 (542)
                      .++++....|.+..........+|++++++.+.++.+| +.++.+.+|+.++..+| .+..+|..+.....|++|.+.+|
T Consensus       220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence            34444444444443333334445555555555555555 44555555555555555 34555555555555555555555


Q ss_pred             CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCC-CcEEeccCccccccccCCCCccc----------cCCCcch
Q 037847          287 DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK-LEVLRLCGCGRFGVIKGKEGNVL----------CDGAEPL  355 (542)
Q Consensus       287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~----------~~~~~~~  355 (542)
                      .++.+|+....++.|++|++..| .+..+|..++..+.. |+.|+.+.+.+.. .|....+..          .......
T Consensus       298 el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  298 ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccc
Confidence            55555555555555555555555 444455432222221 3333333322211 111000000          0111112


Q ss_pred             hHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccc
Q 037847          356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDST  435 (542)
Q Consensus       356 ~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  435 (542)
                      +.-+.+..+|+.|+++++..                            ..+..+.+.+++.|++|+++||.+..++..  
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL----------------------------~~fpas~~~kle~LeeL~LSGNkL~~Lp~t--  425 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRL----------------------------NSFPASKLRKLEELEELNLSGNKLTTLPDT--  425 (1081)
T ss_pred             hhhhccccceeeeeeccccc----------------------------ccCCHHHHhchHHhHHHhcccchhhhhhHH--
Confidence            22233333333333333211                            112234455566666677777766665421  


Q ss_pred             hhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccC
Q 037847          436 EEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRG  515 (542)
Q Consensus       436 ~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  515 (542)
                             ...++.|++|...+|.+..+|.+.+++.|+.+||+.|.++.+...+           ... -|+|++|++.+.
T Consensus       426 -------va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~-----------~~p-~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  426 -------VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE-----------ALP-SPNLKYLDLSGN  486 (1081)
T ss_pred             -------HHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhh-----------hCC-CcccceeeccCC
Confidence                   1336677777776666655556777777777777777776654311           111 167777777776


Q ss_pred             Cc
Q 037847          516 TN  517 (542)
Q Consensus       516 ~~  517 (542)
                      +.
T Consensus       487 ~~  488 (1081)
T KOG0618|consen  487 TR  488 (1081)
T ss_pred             cc
Confidence            54

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.47  E-value=2e-13  Score=145.34  Aligned_cols=242  Identities=17%  Similarity=0.151  Sum_probs=170.2

Q ss_pred             CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEecc
Q 037847          228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD  307 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  307 (542)
                      .+...|+++++.++.+|.. +  .++|+.|++++| .+..+|..+.  .+|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-I--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-c--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            3567899999988888765 3  257999999999 7889998765  589999999999999998764  489999999


Q ss_pred             CCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchh
Q 037847          308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKL  387 (542)
Q Consensus       308 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~  387 (542)
                      +| .+..+|.. +.  ++|+.|++++|.+.. +|.               .+.  .+|+.|+++.+.....   ..  .+
T Consensus       250 ~N-~L~~LP~~-l~--s~L~~L~Ls~N~L~~-LP~---------------~l~--~sL~~L~Ls~N~Lt~L---P~--~l  302 (754)
T PRK15370        250 IN-RITELPER-LP--SALQSLDLFHNKISC-LPE---------------NLP--EELRYLSVYDNSIRTL---PA--HL  302 (754)
T ss_pred             CC-ccCcCChh-Hh--CCCCEEECcCCccCc-ccc---------------ccC--CCCcEEECCCCccccC---cc--cc
Confidence            99 67788876 33  589999999887752 332               111  3678888876643221   11  11


Q ss_pred             hccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh
Q 037847          388 VSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV  466 (542)
Q Consensus       388 ~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~  466 (542)
                      ...++.|++.++.....+     ....++|+.|++++|.+..++.           ..+++|+.|++++|.+ ..+..+ 
T Consensus       303 p~sL~~L~Ls~N~Lt~LP-----~~l~~sL~~L~Ls~N~Lt~LP~-----------~l~~sL~~L~Ls~N~L~~LP~~l-  365 (754)
T PRK15370        303 PSGITHLNVQSNSLTALP-----ETLPPGLKTLEAGENALTSLPA-----------SLPPELQVLDVSKNQITVLPETL-  365 (754)
T ss_pred             hhhHHHHHhcCCccccCC-----ccccccceeccccCCccccCCh-----------hhcCcccEEECCCCCCCcCChhh-
Confidence            234555666554321111     1123689999999998876432           1147899999999988 433333 


Q ss_pred             hccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCC----CCCCCcceEeecc
Q 037847          467 FVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP----QPFPKLKKIQAFH  538 (542)
Q Consensus       467 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----~~~p~L~~L~i~~  538 (542)
                       .++|++|+|++|.+..++.             ..  ..+|+.|++.++ ++..+|...    ..+|++..|++.+
T Consensus       366 -p~~L~~LdLs~N~Lt~LP~-------------~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~  424 (754)
T PRK15370        366 -PPTITTLDVSRNALTNLPE-------------NL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEY  424 (754)
T ss_pred             -cCCcCEEECCCCcCCCCCH-------------hH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeC
Confidence             4799999999999887753             21  347889999885 566665432    2357888888865

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=6.2e-13  Score=140.85  Aligned_cols=234  Identities=21%  Similarity=0.195  Sum_probs=168.9

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST  267 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  267 (542)
                      .+...++.++.+|..  ..+++.|++.+|.+..+|..  .++|+.|++++|.+..++..    ..+|+.|++++| .+..
T Consensus       226 ~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N-~Lt~  296 (788)
T PRK15387        226 TLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGN-QLTS  296 (788)
T ss_pred             EEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc----hhhcCEEECcCC-cccc
Confidence            344455666767653  47899999999999998754  47899999999988876652    367889999999 7888


Q ss_pred             CccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847          268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV  347 (542)
Q Consensus       268 lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  347 (542)
                      +|..   +++|++|++++|.++.+|..   ..+|+.|++++| .+..+|.  +  ..+|++|++++|++.+ +|.     
T Consensus       297 LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~-LP~-----  359 (788)
T PRK15387        297 LPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLAS-LPT-----  359 (788)
T ss_pred             cccc---ccccceeECCCCccccCCCC---cccccccccccC-ccccccc--c--ccccceEecCCCccCC-CCC-----
Confidence            8853   46899999999999998863   346778889998 6777875  2  2579999999998763 221     


Q ss_pred             ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847          348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL  427 (542)
Q Consensus       348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  427 (542)
                             .      ..+|+.|+++.+....      .+.....++.|++..+.....+      ...++|+.|++++|.+
T Consensus       360 -------l------p~~L~~L~Ls~N~L~~------LP~l~~~L~~LdLs~N~Lt~LP------~l~s~L~~LdLS~N~L  414 (788)
T PRK15387        360 -------L------PSELYKLWAYNNRLTS------LPALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRL  414 (788)
T ss_pred             -------C------Ccccceehhhcccccc------CcccccccceEEecCCcccCCC------CcccCCCEEEccCCcC
Confidence                   1      1234445555443221      1222345777887665432111      1236899999999998


Q ss_pred             cceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhh
Q 037847          428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                      ..+|.            .+.+|+.|++++|.+ ..+..+..+++|+.|+|++|.+...
T Consensus       415 ssIP~------------l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        415 TSLPM------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCCCc------------chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence            87542            146789999999999 6666788999999999999988754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.44  E-value=2.6e-14  Score=147.24  Aligned_cols=107  Identities=26%  Similarity=0.346  Sum_probs=63.8

Q ss_pred             ceEEEeecCCcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847          208 AKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST  286 (542)
Q Consensus       208 l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~  286 (542)
                      +.+|+++.|.+..+| .+..+.+|+.|.++.|.+...|.. ...+.+|++|.|.+| ....+|.++..+++|++|+++.|
T Consensus        47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccchh
Confidence            556666666666555 355556666666666655555533 556666666666666 56666666666666666666666


Q ss_pred             CCCcccHHhhcCCCCCEEeccCCcccCccc
Q 037847          287 DITGLPQELKALEKLRYLNLDYAFHLSIIP  316 (542)
Q Consensus       287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp  316 (542)
                      .+..+|..+..+..+..+..++|..+..++
T Consensus       125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg  154 (1081)
T KOG0618|consen  125 HFGPIPLVIEVLTAEEELAASNNEKIQRLG  154 (1081)
T ss_pred             ccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence            666666666666666666666553333333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.43  E-value=1.5e-13  Score=148.64  Aligned_cols=314  Identities=21%  Similarity=0.222  Sum_probs=184.4

Q ss_pred             eEEEecCcccccCCcccccccceEEEeecCC--cCCCCC--CCCCCCccEEEccCc-ccccccchhhccCCCccEEEecC
Q 037847          187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANG--IGSLSE--IPTCPRLVTLLLDGN-RIEEITDGFFQSLSTLRVLSLRG  261 (542)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~  261 (542)
                      +.+.........++......+++.|-+..+.  +..++.  |..++.|++|++++| .+..+|.. ++.+-+||||++++
T Consensus       526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD  604 (889)
T ss_pred             eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence            3444444455555555555679999999886  566655  788999999999988 45566655 99999999999999


Q ss_pred             CCCCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccc
Q 037847          262 NFPPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVI  340 (542)
Q Consensus       262 ~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  340 (542)
                      + .+..+|.++++|..|.+||+..+ .+..+|.....|++|++|.+....  .......++.+.+|++|....+..... 
T Consensus       605 t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~-  680 (889)
T KOG4658|consen  605 T-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV-  680 (889)
T ss_pred             C-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh-
Confidence            9 89999999999999999999988 445566667779999999997763  111111234444555554433332211 


Q ss_pred             cCCCCccccCCCcchhHhhccccCCceeeeEec-chHHHHHhhcCchhhccceeEEeccccCCCCCcee-c--ccc-ccc
Q 037847          341 KGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFG-SSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNV-L--HLA-YME  415 (542)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~-~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~-~--~l~-~l~  415 (542)
                                   ..+..+..+..|..+..... .................++.|.+..+......... .  ... .++
T Consensus       681 -------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~  747 (889)
T KOG4658|consen  681 -------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP  747 (889)
T ss_pred             -------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence                         11111222222221111110 00111112222333455566666655542211100 0  011 134


Q ss_pred             ccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccccc
Q 037847          416 NLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDI  493 (542)
Q Consensus       416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  493 (542)
                      ++..+.+..|.....+.+         ....++|+.|.+..|..  ..++....+..++.+.+..+.+......      
T Consensus       748 ~l~~~~~~~~~~~r~l~~---------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~------  812 (889)
T KOG4658|consen  748 NLSKVSILNCHMLRDLTW---------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML------  812 (889)
T ss_pred             HHHHHHhhccccccccch---------hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee------
Confidence            555666656655442211         12368999999999988  5556667777777766655555544211      


Q ss_pred             ccccCCcCCCCCccceeecccCCcccccCCCC----CCCCCcceEeeccC
Q 037847          494 SEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP----QPFPKLKKIQAFHC  539 (542)
Q Consensus       494 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----~~~p~L~~L~i~~C  539 (542)
                           .+.+.|+++..+.+... .+.++....    +.+|.+.++.+.+|
T Consensus       813 -----~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  813 -----CSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             -----ecCCCCceeEecccCcc-chhheehhcCcccccCccccccceecc
Confidence                 14455555555555542 255444333    45788888888886

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.42  E-value=1e-14  Score=136.58  Aligned_cols=295  Identities=22%  Similarity=0.218  Sum_probs=183.2

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      .+.-.+.++.++|.... .....+.+..|.|+.+|.  |..+++||.|+++.|.++.+.+..|.+++.|..|-+.++..+
T Consensus        50 ~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             eEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            33334556666664332 456778888888888874  888888999999999888888888888888888877775478


Q ss_pred             CcCccc-cCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccc--cc
Q 037847          266 STLPSG-ISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGV--IK  341 (542)
Q Consensus       266 ~~lp~~-i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~--~~  341 (542)
                      +++|+. |+.|..|+-|.+.-|.+.-++ ..+..|++|..|.+.+| .+..++.+.+..+.+++++.+..+.+.-.  +|
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccc
Confidence            888864 678888888888877777654 45788888888888888 67778876688888888888776652110  00


Q ss_pred             CCCCccccCCCcchhHhhccccCCceeeeEecch--HHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccce
Q 037847          342 GKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS--LAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQE  419 (542)
Q Consensus       342 ~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~--~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~  419 (542)
                      ...     ......+.+.+..+-.....+.....  ...+.+...  +......+...+  ..........+..+++|++
T Consensus       208 wla-----~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d--~~d~~cP~~cf~~L~~L~~  278 (498)
T KOG4237|consen  208 WLA-----DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSED--FPDSICPAKCFKKLPNLRK  278 (498)
T ss_pred             hhh-----hHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhcccc--CcCCcChHHHHhhcccceE
Confidence            000     00000000111111000000000000  000111000  000000111111  1112222334788999999


Q ss_pred             eeecccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccccccccc
Q 037847          420 LELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVI  497 (542)
Q Consensus       420 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  497 (542)
                      |++++|.++.+...++..        ...++.|.|..|++  ..-..+.++..|+.|+|++|+|+.+...          
T Consensus       279 lnlsnN~i~~i~~~aFe~--------~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~----------  340 (498)
T KOG4237|consen  279 LNLSNNKITRIEDGAFEG--------AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG----------  340 (498)
T ss_pred             eccCCCccchhhhhhhcc--------hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc----------
Confidence            999999999876666643        78899999999988  3333477899999999999999987542          


Q ss_pred             CCcCCCCCccceeecc
Q 037847          498 GSEHNFFPRLEYLTMW  513 (542)
Q Consensus       498 ~~~~~~~~~L~~L~l~  513 (542)
                        .......|..|.+-
T Consensus       341 --aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  341 --AFQTLFSLSTLNLL  354 (498)
T ss_pred             --cccccceeeeeehc
Confidence              33445556666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.42  E-value=3e-15  Score=124.24  Aligned_cols=167  Identities=22%  Similarity=0.301  Sum_probs=133.9

Q ss_pred             cCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhc
Q 037847          218 IGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA  297 (542)
Q Consensus       218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~  297 (542)
                      +..++.+..+++.+.|.++.|.++..++. +..+.+|++|++.+| .++++|.+|+.++.|+.|+++.|++..+|.+++.
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence            34456677888889999999999988888 889999999999999 7999999999999999999999999999999999


Q ss_pred             CCCCCEEeccCCccc-CccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847          298 LEKLRYLNLDYAFHL-SIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL  376 (542)
Q Consensus       298 l~~L~~L~l~~~~~~-~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~  376 (542)
                      ++.|+.||+..|+.- ..+|.. +-.|+.|+.|.+.+|.+.                ..+.+.++|++|+.|.+.-++..
T Consensus       101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe----------------~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE----------------ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc----------------cCChhhhhhcceeEEeeccCchh
Confidence            999999999988433 357776 667889999999887653                34456778888888877754422


Q ss_pred             HHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceee
Q 037847          377 AVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKI  432 (542)
Q Consensus       377 ~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  432 (542)
                      ..                             ...++.+..|++|+|.||.+..+|+
T Consensus       164 ~l-----------------------------pkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  164 SL-----------------------------PKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             hC-----------------------------cHHHHHHHHHHHHhcccceeeecCh
Confidence            11                             1235567888999999988877654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=7.8e-13  Score=130.24  Aligned_cols=69  Identities=20%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             cccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCC--Cc----chhhhccCcceEEEeccchhhh
Q 037847          413 YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGK--DL----TWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       413 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~--~~----~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                      .+++|++|++++|.+....+..+..  ... ...+.|++|++++|.+.  ..    ..+..+++|+++++++|.+.+.
T Consensus       219 ~~~~L~~L~ls~n~l~~~~~~~l~~--~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         219 SLKSLEVLNLGDNNLTDAGAAALAS--ALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             ccCCCCEEecCCCcCchHHHHHHHH--HHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            3456666666666554311111100  000 01356666666666551  11    1233345566666666555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.27  E-value=1.1e-12  Score=129.14  Aligned_cols=265  Identities=18%  Similarity=0.115  Sum_probs=150.6

Q ss_pred             CCCCCccEEEccCcccccc----cchhhccCCCccEEEecCCCCC------CcCccccCCCCCCCEEeccCCCCCc-ccH
Q 037847          225 PTCPRLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPP------STLPSGISGLVSLHHLDLSSTDITG-LPQ  293 (542)
Q Consensus       225 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~------~~lp~~i~~l~~L~~L~l~~~~i~~-lp~  293 (542)
                      ..+.+|+.|.++++.++..    ....+...++|+.|+++++...      ..++..+..+.+|++|++++|.+.. .+.
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            4455678888888766322    1222556667888888777322      1223455667788888888877653 444


Q ss_pred             HhhcCCC---CCEEeccCCcccC----ccchhhcCCC-CCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          294 ELKALEK---LRYLNLDYAFHLS----IIPHQLISCF-SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       294 ~i~~l~~---L~~L~l~~~~~~~----~lp~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      .+..+.+   |++|++++|....    .+... +..+ ++|+.|++++|.+.+.           ........+..+++|
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~-----------~~~~~~~~~~~~~~L  167 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA-----------SCEALAKALRANRDL  167 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch-----------HHHHHHHHHHhCCCc
Confidence            5555544   8888888774321    12222 4455 7788888887776421           111233445556667


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.|+++.+..... .+                       ......+..+++|++|++++|.+.......+.    .....
T Consensus       168 ~~L~l~~n~l~~~-~~-----------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~----~~~~~  219 (319)
T cd00116         168 KELNLANNGIGDA-GI-----------------------RALAEGLKANCNLEVLDLNNNGLTDEGASALA----ETLAS  219 (319)
T ss_pred             CEEECcCCCCchH-HH-----------------------HHHHHHHHhCCCCCEEeccCCccChHHHHHHH----HHhcc
Confidence            7766665432110 00                       00011233456899999999987643221111    01234


Q ss_pred             ccccCEEEEccCCCC--Ccchhh-h----ccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc
Q 037847          446 FRNLNTVVLRSCRGK--DLTWLV-F----VQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL  518 (542)
Q Consensus       446 l~~L~~L~L~~c~~~--~~~~l~-~----l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  518 (542)
                      +++|+.|++++|...  .+..+. .    .+.|++|++++|.+++..... .       ......+++|+.+++.++. +
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l-------~~~~~~~~~L~~l~l~~N~-l  290 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD-L-------AEVLAEKESLLELDLRGNK-F  290 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH-H-------HHHHhcCCCccEEECCCCC-C
Confidence            688999999999872  333332 2    379999999998876322110 0       0133446889999998854 3


Q ss_pred             cc-----cCCCCCCC-CCcceEeecc
Q 037847          519 KS-----VYPNPQPF-PKLKKIQAFH  538 (542)
Q Consensus       519 ~~-----~~~~~~~~-p~L~~L~i~~  538 (542)
                      ..     +......+ +.|+.++|.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         291 GEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             cHHHHHHHHHHHhhcCCchhhcccCC
Confidence            32     22222234 6777777754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.24  E-value=3.3e-13  Score=126.56  Aligned_cols=285  Identities=20%  Similarity=0.210  Sum_probs=176.3

Q ss_pred             ecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccC-CCCCccc
Q 037847          214 TANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS-TDITGLP  292 (542)
Q Consensus       214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~-~~i~~lp  292 (542)
                      ++..+..+|.-. -+.-..+.+..|+++.+|+..|+.+++||.|||++|....--|+.|..+..|-.|-+.+ |+|+.+|
T Consensus        54 r~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   54 RGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             cCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            344455555311 13456789999999999999999999999999999944444588899999998888777 8999999


Q ss_pred             HH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeE
Q 037847          293 QE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS  371 (542)
Q Consensus       293 ~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~  371 (542)
                      +. ++.|..|+.|.+.-| .+..++.+++..|++|+.|.+.+|.+... +.              ..+..+..++.+.+.
T Consensus       133 k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i-~~--------------~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSI-CK--------------GTFQGLAAIKTLHLA  196 (498)
T ss_pred             hhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhh-cc--------------ccccchhccchHhhh
Confidence            76 788999999999888 67788888899999999999988875321 10              123444455554444


Q ss_pred             ecchH------HHHHhhcC----chhhccceeEEeccccCCCCCceec-ccccccccceeeecccCccc-eeeccchhhc
Q 037847          372 FGSSL------AVQKFLKY----PKLVSITQSVWVECGTYTRPPFNVL-HLAYMENLQELELESCNLEE-MKIDSTEEVK  439 (542)
Q Consensus       372 ~~~~~------~~~~l~~~----~~~~~~l~~l~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~  439 (542)
                      -+...      .......+    .....+.....+.....  ...... .....+.+.+--.+.|.... .|...     
T Consensus       197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri--~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c-----  269 (498)
T KOG4237|consen  197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI--NQEDARKFLCSLESLPSRLSSEDFPDSICPAKC-----  269 (498)
T ss_pred             cCccccccccchhhhHHhhchhhcccceecchHHHHHHHh--cccchhhhhhhHHhHHHhhccccCcCCcChHHH-----
Confidence            33211      11100000    00000000000000000  000000 00001111110111111111 11111     


Q ss_pred             ccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCc
Q 037847          440 KLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTN  517 (542)
Q Consensus       440 ~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  517 (542)
                         ...+++|++|+|++|++  ....++..+.++++|.|.+|+++.+..            ....++..|+.|++.+. +
T Consensus       270 ---f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~------------~~f~~ls~L~tL~L~~N-~  333 (498)
T KOG4237|consen  270 ---FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS------------GMFQGLSGLKTLSLYDN-Q  333 (498)
T ss_pred             ---HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH------------HhhhccccceeeeecCC-e
Confidence               24489999999999999  445578899999999999999998754            25667889999999994 6


Q ss_pred             ccccCCC-CCCCCCcceEeecc
Q 037847          518 LKSVYPN-PQPFPKLKKIQAFH  538 (542)
Q Consensus       518 l~~~~~~-~~~~p~L~~L~i~~  538 (542)
                      ++.+.++ .....+|.+|++..
T Consensus       334 it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  334 ITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             eEEEecccccccceeeeeehcc
Confidence            7765443 33456677776643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=4.7e-11  Score=103.90  Aligned_cols=141  Identities=31%  Similarity=0.385  Sum_probs=53.7

Q ss_pred             cCCcCCCCCCCCCCCccEEEccCcccccccchhhc-cCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccH
Q 037847          215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQ-SLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ  293 (542)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~  293 (542)
                      .+.|...+.+.+..+++.|++.+|.++.+..  ++ .+.+|++|++++| .+..++ .+..+.+|++|++++|.|+.++.
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred             ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence            3455666667777788999999998877654  54 5788999999999 777776 68889999999999999999876


Q ss_pred             Hh-hcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeE
Q 037847          294 EL-KALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS  371 (542)
Q Consensus       294 ~i-~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~  371 (542)
                      .+ ..+++|++|++++| .+..+.. ..+..+++|+.|++.+|++..            ....-..-+..+++|+.||-.
T Consensus        82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~------------~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE------------KKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG------------STTHHHHHHHH-TT-SEETTE
T ss_pred             chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc------------hhhHHHHHHHHcChhheeCCE
Confidence            66 46899999999998 4443321 226778999999999998753            233444556677778877765


Q ss_pred             e
Q 037847          372 F  372 (542)
Q Consensus       372 ~  372 (542)
                      -
T Consensus       149 ~  149 (175)
T PF14580_consen  149 D  149 (175)
T ss_dssp             E
T ss_pred             E
Confidence            3

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.3e-10  Score=110.92  Aligned_cols=205  Identities=21%  Similarity=0.179  Sum_probs=121.2

Q ss_pred             ccCCCccEEEecCCCCCCcCcc--ccCCCCCCCEEeccCCCCCc---ccHHhhcCCCCCEEeccCCcccCccchhhcCCC
Q 037847          249 QSLSTLRVLSLRGNFPPSTLPS--GISGLVSLHHLDLSSTDITG---LPQELKALEKLRYLNLDYAFHLSIIPHQLISCF  323 (542)
Q Consensus       249 ~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l  323 (542)
                      +++++|+...|+++ .+...+.  ....|++++.|||++|-+..   +-.-+..|++|+.|+++.|..........-..+
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            34566677777666 4444442  44567777777777774444   334456777888888877733222222112345


Q ss_pred             CCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCC
Q 037847          324 SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTR  403 (542)
Q Consensus       324 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~  403 (542)
                      +.|+.|.+++|.+...              ....-+...++|..|.+..+......                        
T Consensus       197 ~~lK~L~l~~CGls~k--------------~V~~~~~~fPsl~~L~L~~N~~~~~~------------------------  238 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWK--------------DVQWILLTFPSLEVLYLEANEIILIK------------------------  238 (505)
T ss_pred             hhhheEEeccCCCCHH--------------HHHHHHHhCCcHHHhhhhccccccee------------------------
Confidence            6777788888776421              12222334455555555544211000                        


Q ss_pred             CCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC---CCcch-----hhhccCcceEE
Q 037847          404 PPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG---KDLTW-----LVFVQNLKQLN  475 (542)
Q Consensus       404 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~-----l~~l~~L~~L~  475 (542)
                          .....-+..|++|+|++|++..++-.       .-...|+.|+.|.++.|.+   ..++.     ...+|+|++|+
T Consensus       239 ----~~~~~i~~~L~~LdLs~N~li~~~~~-------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~  307 (505)
T KOG3207|consen  239 ----ATSTKILQTLQELDLSNNNLIDFDQG-------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN  307 (505)
T ss_pred             ----cchhhhhhHHhhccccCCcccccccc-------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence                01122356788899999888764321       1124588899999988887   22222     34688999999


Q ss_pred             EeccchhhhcccccccccccccCCcCCCCCccceeeccc
Q 037847          476 MQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWR  514 (542)
Q Consensus       476 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  514 (542)
                      +..|++.++...           ......++|+.|.+..
T Consensus       308 i~~N~I~~w~sl-----------~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  308 ISENNIRDWRSL-----------NHLRTLENLKHLRITL  335 (505)
T ss_pred             cccCcccccccc-----------chhhccchhhhhhccc
Confidence            999888777542           2555677777777644

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=2.1e-10  Score=104.13  Aligned_cols=88  Identities=25%  Similarity=0.205  Sum_probs=71.1

Q ss_pred             ccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhccccc
Q 037847          410 HLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEK  489 (542)
Q Consensus       410 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~  489 (542)
                      ++..+++|+.|++++|.+.++.-..         ..+.|.++|.|+.|.++.+..++.+-+|..|++++|+|+++...  
T Consensus       324 nLa~L~~L~~LDLS~N~Ls~~~Gwh---------~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV--  392 (490)
T KOG1259|consen  324 NLAELPQLQLLDLSGNLLAECVGWH---------LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEV--  392 (490)
T ss_pred             hhhhcccceEeecccchhHhhhhhH---------hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHh--
Confidence            3556788999999998887642211         23789999999999998888999999999999999999988652  


Q ss_pred             ccccccccCCcCCCCCccceeecccCCc
Q 037847          490 LSDISEVIGSEHNFFPRLEYLTMWRGTN  517 (542)
Q Consensus       490 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~  517 (542)
                               ..++.+|.|++|.+.+.|-
T Consensus       393 ---------~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  393 ---------NHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ---------cccccccHHHHHhhcCCCc
Confidence                     3788899999999988763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=6e-10  Score=97.05  Aligned_cols=131  Identities=26%  Similarity=0.330  Sum_probs=54.6

Q ss_pred             CcccccccceEEEeecCCcCCCCCCC-CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcccc-CCCCC
Q 037847          200 PKVEEWEGAKRISLTANGIGSLSEIP-TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVS  277 (542)
Q Consensus       200 ~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~  277 (542)
                      +......+.+.|++.++.|..+..+. .+.+|+.|++++|.++.+..  +..+++|++|++++| .+..++..+ ..+++
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence            33444467899999999999887776 68899999999999988765  788999999999999 677776555 36899


Q ss_pred             CCEEeccCCCCCccc--HHhhcCCCCCEEeccCCcccCc--cchhhcCCCCCCcEEeccC
Q 037847          278 LHHLDLSSTDITGLP--QELKALEKLRYLNLDYAFHLSI--IPHQLISCFSKLEVLRLCG  333 (542)
Q Consensus       278 L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~  333 (542)
                      |++|++++|.|.++-  ..+..+++|+.|++.+|.....  ....++..+++|+.|+-..
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999999999887743  4577899999999999954321  2234577899999998654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.77  E-value=2.7e-10  Score=112.15  Aligned_cols=123  Identities=28%  Similarity=0.370  Sum_probs=63.0

Q ss_pred             eEEEeecCCcCCCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~  287 (542)
                      ...+++.|.+..+|. ...|..|..+.+..|.+..++.. ++.+..|++|+|+.| .+..+|..++.|+ |+.|-+++|+
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc
Confidence            334444444444442 33444455555555555444433 455555555555555 4555555554443 5555555555


Q ss_pred             CCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847          288 ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       288 i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                      ++.+|..++-+..|.+|+.+.| .+..+|.. ++.+.+|+.|.+..|..
T Consensus       155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHL  201 (722)
T ss_pred             cccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhh
Confidence            5555555555555555555555 34445544 45555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.75  E-value=8.8e-09  Score=104.51  Aligned_cols=106  Identities=35%  Similarity=0.455  Sum_probs=54.1

Q ss_pred             CCCCCccEEEccCcccccccchhhccCC-CccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847          225 PTCPRLVTLLLDGNRIEEITDGFFQSLS-TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY  303 (542)
Q Consensus       225 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  303 (542)
                      ...+.+..|.+.++.+..+++. ...+. +|+.|+++++ .+..+|..++.+++|+.|++++|.+..+|...+.+++|+.
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             hcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            3344555555555555555443 23332 5555555555 4555544455555555555555555555555545555555


Q ss_pred             EeccCCcccCccchhhcCCCCCCcEEeccCc
Q 037847          304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGC  334 (542)
Q Consensus       304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~  334 (542)
                      |++++| .+..+|.. ++.+..|++|.+.+|
T Consensus       191 L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         191 LDLSGN-KISDLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             eeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence            555555 44555542 233444555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.6e-09  Score=101.20  Aligned_cols=133  Identities=20%  Similarity=0.148  Sum_probs=88.6

Q ss_pred             ccccceEEEeecCCcCCCC---CCCCCCCccEEEccCccccccc--chhhccCCCccEEEecCCCCCCcCccc-cCCCCC
Q 037847          204 EWEGAKRISLTANGIGSLS---EIPTCPRLVTLLLDGNRIEEIT--DGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVS  277 (542)
Q Consensus       204 ~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~  277 (542)
                      .+++++.+++.+......+   ....|++++.|++++|-+....  ..+...+++|+.|+++.|+......+. -..+.+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4567888888888776665   3667889999999998554322  234667899999999988432211111 135778


Q ss_pred             CCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          278 LHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       278 L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      |+.|.++.|+++.  +-.....+++|+.|++..|..+..-... ..-++.|++|++++|.+.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc
Confidence            8889999988874  3344557788888888888422211111 234667888888888764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=6.7e-10  Score=100.92  Aligned_cols=110  Identities=22%  Similarity=0.247  Sum_probs=60.7

Q ss_pred             ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC----CCcchh-hhccCcceEEEec-cchhhhc
Q 037847          412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG----KDLTWL-VFVQNLKQLNMQG-FTMEEII  485 (542)
Q Consensus       412 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~----~~~~~l-~~l~~L~~L~L~~-~~l~~~~  485 (542)
                      ..++.|.+|+++||......+..      +...--++|+.|+|++|..    ..+..+ ...|+|.+|+|++ +.++.-.
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~  330 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTV------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC  330 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhH------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence            34566666666666655411110      1111235667777777654    222222 3567777777777 5554422


Q ss_pred             ccccccccccccCCcCCCCCccceeecccCCcccc-cCCCCCCCCCcceEeeccC
Q 037847          486 SVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKS-VYPNPQPFPKLKKIQAFHC  539 (542)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~p~L~~L~i~~C  539 (542)
                      .            ...-.|+.|++|.++.|..+.- --.....+|+|.+|++.+|
T Consensus       331 ~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  331 F------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             H------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            1            1334577777777777765431 1123456777788877776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.65  E-value=8.7e-09  Score=93.84  Aligned_cols=125  Identities=21%  Similarity=0.291  Sum_probs=57.2

Q ss_pred             cccceEEEeecCCcCCCCCC-CCCCCccEEEccCcccccccchhhccCCCccEEEecCC---CCCCcCccccCCCCCCCE
Q 037847          205 WEGAKRISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN---FPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       205 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---~~~~~lp~~i~~l~~L~~  280 (542)
                      ++++..+-++.++-..+-.+ ..-+.|.++.+....+...+.  +-.+..+.  |..+.   ......-..+..++.|.+
T Consensus       213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~--l~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS--LLPETILA--DPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             hhhhheeeeeccchhheeceeecCchhheeeeeccccccccc--ccchhhhc--CccCCCCCccCCceEEecchHhhhhh
Confidence            45566666666655544332 234566777666553322211  11111111  11111   001111122334455556


Q ss_pred             EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847          281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                      +|+++|.|+.+.+++.-+++++.|++++| .+..+..  +..+++|++|++++|.+
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLL  341 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchh
Confidence            66666655555555555566666666655 3333332  44555566666655544

>PLN03150 hypothetical protein; Provisional

Probab=98.57  E-value=2e-07  Score=99.30  Aligned_cols=108  Identities=23%  Similarity=0.334  Sum_probs=83.1

Q ss_pred             CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhhcCCCCCEEecc
Q 037847          229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLRYLNLD  307 (542)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~  307 (542)
                      .++.|++++|.+....+..++.+++|+.|+|++|.....+|..++.+.+|++|++++|.+.. +|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46778888888776555558888888888888885556888888888888888888888874 78888888888888888


Q ss_pred             CCcccCccchhhcCC-CCCCcEEeccCcccc
Q 037847          308 YAFHLSIIPHQLISC-FSKLEVLRLCGCGRF  337 (542)
Q Consensus       308 ~~~~~~~lp~~~~~~-l~~L~~L~l~~~~~~  337 (542)
                      +|.....+|.. ++. +.++..+++.+|...
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCccc
Confidence            88666678876 443 346677777777543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.56  E-value=6.7e-08  Score=98.08  Aligned_cols=131  Identities=28%  Similarity=0.359  Sum_probs=110.0

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCC--CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCC
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCP--RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH  279 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~  279 (542)
                      ......+..+.+.++.+..++......  +|+.|++++|.+..++.. +..+++|+.|++++| .+.++|...+.+..|+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence            344467899999999999998755554  899999999999887533 789999999999999 8999998877999999


Q ss_pred             EEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847          280 HLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       280 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                      .|++++|.++.+|..+..+.+|++|.+++|. ....+.. +.+++++..+.+.+++.
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKL  244 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCcee
Confidence            9999999999999998888899999999984 3344443 78888888888777664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.53  E-value=5.9e-09  Score=99.22  Aligned_cols=286  Identities=22%  Similarity=0.177  Sum_probs=163.4

Q ss_pred             CCccEEEccCcccccc--cchhhccCCCccEEEecCCCCCCcC-cccc-CCCCCCCEEeccCC-CCCc--ccHHhhcCCC
Q 037847          228 PRLVTLLLDGNRIEEI--TDGFFQSLSTLRVLSLRGNFPPSTL-PSGI-SGLVSLHHLDLSST-DITG--LPQELKALEK  300 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i-~~l~~L~~L~l~~~-~i~~--lp~~i~~l~~  300 (542)
                      ..|+.|.+.|+.-...  ...+-..++++..|.+.+|..+++- -.++ ..+..|+++++..| .++.  +-.....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3567778887732211  1233457788888888888654421 1122 35778888888876 5655  3233456788


Q ss_pred             CCEEeccCCcccCcc-chhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHH
Q 037847          301 LRYLNLDYAFHLSII-PHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQ  379 (542)
Q Consensus       301 L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~  379 (542)
                      |+++++++|..+..- ......+.+.++.+...||.-.+.             ......=.....+..+++.-+.....+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-------------e~l~~~~~~~~~i~~lnl~~c~~lTD~  284 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-------------EALLKAAAYCLEILKLNLQHCNQLTDE  284 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-------------HHHHHHhccChHhhccchhhhccccch
Confidence            888888888655430 011244455666666666653210             011111112222333443333333344


Q ss_pred             HhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccc-eeeccchhhcccccccccccCEEEEccCC
Q 037847          380 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEE-MKIDSTEEVKKLFRNGFRNLNTVVLRSCR  458 (542)
Q Consensus       380 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~c~  458 (542)
                      .+.........++.+...++....+.....--....+|+.|.+++|...+ .....       -..+.+.|+.+++..|.
T Consensus       285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-------l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-------LGRNCPHLERLDLEECG  357 (483)
T ss_pred             HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-------hhcCChhhhhhcccccc
Confidence            44444444455566666666542222222223356889999998887432 11111       12457889999999888


Q ss_pred             C-CC--cchhh-hccCcceEEEec-cchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC-CCCCCCCcc
Q 037847          459 G-KD--LTWLV-FVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP-NPQPFPKLK  532 (542)
Q Consensus       459 ~-~~--~~~l~-~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~p~L~  532 (542)
                      . .+  +..++ +.|.|+.|.|++ ..+++... ..+.       +...+...|+.+.+.+||.+.+-.- ....+++|+
T Consensus       358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi-~~l~-------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le  429 (483)
T KOG4341|consen  358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGI-RHLS-------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE  429 (483)
T ss_pred             eehhhhHhhhccCCchhccCChhhhhhhhhhhh-hhhh-------hccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence            7 22  22232 678999999998 45554411 1111       2445678899999999998766432 234578999


Q ss_pred             eEeeccCCC
Q 037847          533 KIQAFHCRQ  541 (542)
Q Consensus       533 ~L~i~~C~~  541 (542)
                      .+++.+|..
T Consensus       430 ri~l~~~q~  438 (483)
T KOG4341|consen  430 RIELIDCQD  438 (483)
T ss_pred             eeeeechhh
Confidence            999988864

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.49  E-value=1.6e-08  Score=94.17  Aligned_cols=139  Identities=22%  Similarity=0.218  Sum_probs=73.8

Q ss_pred             CCCCCCccEEEccCccccc----ccchhhccCCCccEEEecCCC---CCCcCccc-------cCCCCCCCEEeccCCCCC
Q 037847          224 IPTCPRLVTLLLDGNRIEE----ITDGFFQSLSTLRVLSLRGNF---PPSTLPSG-------ISGLVSLHHLDLSSTDIT  289 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~---~~~~lp~~-------i~~l~~L~~L~l~~~~i~  289 (542)
                      ...+..++.++++||.+..    .....+...+.|+..++++-.   ...++|+.       +-.+++|+++|||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4455666777777775532    122335566677777776641   12233332       334557778888777443


Q ss_pred             c-----ccHHhhcCCCCCEEeccCCcccCccchhh-------------cCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847          290 G-----LPQELKALEKLRYLNLDYAFHLSIIPHQL-------------ISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG  351 (542)
Q Consensus       290 ~-----lp~~i~~l~~L~~L~l~~~~~~~~lp~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  351 (542)
                      .     +-.-+.++..|++|.+.+| -+.......             +..-+.||.+...+|....           ..
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-----------~g  173 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-----------GG  173 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-----------cc
Confidence            2     2344667778888888777 332221111             2334567777666554321           11


Q ss_pred             CcchhHhhccccCCceeeeEecc
Q 037847          352 AEPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       352 ~~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                      ....-..++..+.|+.+.+..++
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~  196 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNG  196 (382)
T ss_pred             HHHHHHHHHhccccceEEEeccc
Confidence            11233344555666666666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.49  E-value=1.7e-08  Score=99.81  Aligned_cols=131  Identities=24%  Similarity=0.329  Sum_probs=93.3

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL  281 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L  281 (542)
                      +..+..+..++++.|.+..+|.-.-.--|+.|.+++|+++.+|.. ++....|..||.+.| .+..+|..++++..|+.|
T Consensus       117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l  194 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHH
Confidence            344455666777777777665422223367777777777777666 667777777777777 677777777777888888


Q ss_pred             eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ++++|.+..+|+.+.. -.|..||++.| ++..+|.. +.+|+.|++|-+.+|.+.
T Consensus       195 ~vrRn~l~~lp~El~~-LpLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  195 NVRRNHLEDLPEELCS-LPLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHhhhhhhhCCHHHhC-CceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCC
Confidence            8877777777777773 35777887777 67778876 778888888888777764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.46  E-value=5.3e-09  Score=99.56  Aligned_cols=294  Identities=18%  Similarity=0.187  Sum_probs=175.9

Q ss_pred             ccceEEEeecCCcCCCCC----CCCCCCccEEEccCcc-cccc-cchhhccCCCccEEEecCCCCCCcC--ccccCCCCC
Q 037847          206 EGAKRISLTANGIGSLSE----IPTCPRLVTLLLDGNR-IEEI-TDGFFQSLSTLRVLSLRGNFPPSTL--PSGISGLVS  277 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l--p~~i~~l~~  277 (542)
                      ..++.+++.+..-.....    -..+++++.|.+.++. +++. ...+-..+.+|++|++..|..++..  -.....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            345667777664333221    3578888888888873 3221 1222346889999999998555532  112346788


Q ss_pred             CCEEeccCC-CCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcC----CCCCCcEEeccCccccccccCCCCccccC
Q 037847          278 LHHLDLSST-DITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLIS----CFSKLEVLRLCGCGRFGVIKGKEGNVLCD  350 (542)
Q Consensus       278 L~~L~l~~~-~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  350 (542)
                      |.||+++.| .|++  +-.-...+++|+.+.+.+|..   .+...+.    ....+-.+++..|....            
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lT------------  282 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLT------------  282 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhcccc------------
Confidence            999999988 5554  333455666777887777732   2222222    23335555655664332            


Q ss_pred             CCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCccc
Q 037847          351 GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLEE  429 (542)
Q Consensus       351 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~  429 (542)
                       ......--..+..|+.+..+.+.......+.....-...++.+.+..+.. .....+..+ .+.+.|+.+++.+|....
T Consensus       283 -D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  283 -DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             -chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceeh
Confidence             11122222356678888888776655555555555567777777777663 111112222 246789999998886654


Q ss_pred             ee-eccchhhcccccccccccCEEEEccCCC-CCc--ch----hhhccCcceEEEec-cchhhhcccccccccccccCCc
Q 037847          430 MK-IDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDL--TW----LVFVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSE  500 (542)
Q Consensus       430 ~~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~--~~----l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~  500 (542)
                      .. +.       -...+++.|+++.++.|.. .+-  ..    -..+..|+.+.|++ +.+++...            ..
T Consensus       361 d~tL~-------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~  421 (483)
T KOG4341|consen  361 DGTLA-------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EH  421 (483)
T ss_pred             hhhHh-------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------------HH
Confidence            21 11       1225688999999999877 333  11    23567888999999 55555432            24


Q ss_pred             CCCCCccceeecccCCcccccCCC--CCCCCCcceEe
Q 037847          501 HNFFPRLEYLTMWRGTNLKSVYPN--PQPFPKLKKIQ  535 (542)
Q Consensus       501 ~~~~~~L~~L~l~~c~~l~~~~~~--~~~~p~L~~L~  535 (542)
                      ...+++|+.+.+.+|.....-+..  ...+|+++...
T Consensus       422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             HhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            556889999999888877653322  33467766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=1.9e-07  Score=66.63  Aligned_cols=58  Identities=31%  Similarity=0.485  Sum_probs=35.7

Q ss_pred             CCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847          277 SLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       277 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                      +|++|++++|.++.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666666553 4456666666666666 4555655556666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.42  E-value=2.3e-07  Score=66.21  Aligned_cols=58  Identities=34%  Similarity=0.524  Sum_probs=34.1

Q ss_pred             CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCC
Q 037847          229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~  287 (542)
                      +|++|++++|.+..+++..|.++++|++|++++| .+..+| ..|..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4566666666666666555666666666666666 344443 345566666666666554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.2e-08  Score=92.89  Aligned_cols=181  Identities=23%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             CCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847          277 SLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP  354 (542)
Q Consensus       277 ~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  354 (542)
                      .|++|||++..|+.  +.--+..+.+|+.|.+.++..-+.+... +.+-.+|+.|+++.|.-...             ..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~-------------n~  251 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE-------------NA  251 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch-------------hH
Confidence            36677777665554  4344556677777777776433334333 55556777777776653210             01


Q ss_pred             hhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecc-cccccccceeeecccCccceeec
Q 037847          355 LMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH-LAYMENLQELELESCNLEEMKID  433 (542)
Q Consensus       355 ~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~  433 (542)
                      .---+.+++.|..|+++|+.......-....+....+..|++.++........... ...+++|.+|++++|...+-  +
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~  329 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--D  329 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--h
Confidence            11124566666667777665433222112223333445555555432111111222 23567777777777655441  1


Q ss_pred             cchhhcccccccccccCEEEEccCCC---CCcchhhhccCcceEEEec
Q 037847          434 STEEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQG  478 (542)
Q Consensus       434 ~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~  478 (542)
                      .+     .....|+.|++|.++.|..   +.+-.+...|+|.+|++.+
T Consensus       330 ~~-----~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  330 CF-----QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HH-----HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence            00     0112367777777777765   2223355667777777766

>PLN03150 hypothetical protein; Provisional

Probab=98.28  E-value=1.6e-06  Score=92.52  Aligned_cols=89  Identities=26%  Similarity=0.398  Sum_probs=78.5

Q ss_pred             CccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCC-cccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEec
Q 037847          253 TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT-GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL  331 (542)
Q Consensus       253 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l  331 (542)
                      .++.|+|+++.....+|..++.+.+|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|++|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            4788999999666789999999999999999999987 48999999999999999999666688886 899999999999


Q ss_pred             cCccccccccC
Q 037847          332 CGCGRFGVIKG  342 (542)
Q Consensus       332 ~~~~~~~~~~~  342 (542)
                      ++|.+.+.+|.
T Consensus       498 s~N~l~g~iP~  508 (623)
T PLN03150        498 NGNSLSGRVPA  508 (623)
T ss_pred             cCCcccccCCh
Confidence            99998876654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=1.9e-07  Score=85.20  Aligned_cols=79  Identities=19%  Similarity=0.147  Sum_probs=48.3

Q ss_pred             ccccCEEEEccCCC---CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccC
Q 037847          446 FRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY  522 (542)
Q Consensus       446 l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  522 (542)
                      ||++..+.+..|++   ..-.....+|.+--|.|+.+++..+...           ....+||+|..|.+.+.|-+..+.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv-----------D~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV-----------DALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHH-----------HHHcCCchhheeeccCCccccccc
Confidence            67777777777766   2222234566666777777777666542           255667777777777777666654


Q ss_pred             CC------CCCCCCcceEe
Q 037847          523 PN------PQPFPKLKKIQ  535 (542)
Q Consensus       523 ~~------~~~~p~L~~L~  535 (542)
                      .+      ++.+|+++.|+
T Consensus       267 ~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  267 GGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCcceEEEEeeccceEEec
Confidence            43      22355555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.18  E-value=1.7e-07  Score=95.45  Aligned_cols=197  Identities=25%  Similarity=0.265  Sum_probs=107.4

Q ss_pred             CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEe
Q 037847          226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN  305 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~  305 (542)
                      .+..+..+.+..|.+...... +..+++|.+|++.+| .+..+...+..+.+|++|++++|.|+.+. .+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence            344444555555554442222 556666666666666 55555533566666666666666666652 355566666666


Q ss_pred             ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh--hccccCCceeeeEecchHHHHHhhc
Q 037847          306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE--LLGLKHLNVLSWSFGSSLAVQKFLK  383 (542)
Q Consensus       306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~~~~~~l~~  383 (542)
                      +.+| .+..++.  +..+++|+.+++.+|.+...                 ..  +..+..++.+.+..+...       
T Consensus       147 l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~i-----------------e~~~~~~~~~l~~l~l~~n~i~-------  199 (414)
T KOG0531|consen  147 LSGN-LISDISG--LESLKSLKLLDLSYNRIVDI-----------------ENDELSELISLEELDLGGNSIR-------  199 (414)
T ss_pred             eccC-cchhccC--CccchhhhcccCCcchhhhh-----------------hhhhhhhccchHHHhccCCchh-------
Confidence            6666 4555544  45566666666666654311                 11  223333333333322211       


Q ss_pred             CchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccccc--ccCEEEEccCCC-C
Q 037847          384 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFR--NLNTVVLRSCRG-K  460 (542)
Q Consensus       384 ~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~c~~-~  460 (542)
                                             ....+..+..+..+++..+.+..+..  .        ..+.  +|+.+++.++.. .
T Consensus       200 -----------------------~i~~~~~~~~l~~~~l~~n~i~~~~~--l--------~~~~~~~L~~l~l~~n~i~~  246 (414)
T KOG0531|consen  200 -----------------------EIEGLDLLKKLVLLSLLDNKISKLEG--L--------NELVMLHLRELYLSGNRISR  246 (414)
T ss_pred             -----------------------cccchHHHHHHHHhhcccccceeccC--c--------ccchhHHHHHHhcccCcccc
Confidence                                   01122223344444666666654211  0        1123  388999999988 3


Q ss_pred             CcchhhhccCcceEEEeccchhhhc
Q 037847          461 DLTWLVFVQNLKQLNMQGFTMEEII  485 (542)
Q Consensus       461 ~~~~l~~l~~L~~L~L~~~~l~~~~  485 (542)
                      ....+..++.+..|++.++.+....
T Consensus       247 ~~~~~~~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  247 SPEGLENLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             ccccccccccccccchhhccccccc
Confidence            3366778888999999988877654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=2.8e-07  Score=93.79  Aligned_cols=128  Identities=32%  Similarity=0.407  Sum_probs=103.1

Q ss_pred             ccccceEEEeecCCcCC-CCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847          204 EWEGAKRISLTANGIGS-LSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD  282 (542)
Q Consensus       204 ~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~  282 (542)
                      .+..+..+.+..+.+.. ...+..+.+|..|++.+|.+..+... +..+.+|++|++++| .+..+. .+..+..|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence            34556666677887777 34588899999999999998877654 678999999999999 777776 678888999999


Q ss_pred             ccCCCCCcccHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCcccc
Q 037847          283 LSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       283 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~  337 (542)
                      +.+|.|+.++ .+..+++|+.+++++| .+..+.. . ...+.+|+.+.+.+|.+.
T Consensus       147 l~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence            9999998874 4566999999999999 5555554 2 367889999999888764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.11  E-value=8.3e-08  Score=97.50  Aligned_cols=154  Identities=19%  Similarity=0.273  Sum_probs=90.6

Q ss_pred             CcccccccceEEEeecCCcCCCCCCCCC-CCccEEEccCc--ccccccchh---hcc---CCCccEEEecCCCCCCcCcc
Q 037847          200 PKVEEWEGAKRISLTANGIGSLSEIPTC-PRLVTLLLDGN--RIEEITDGF---FQS---LSTLRVLSLRGNFPPSTLPS  270 (542)
Q Consensus       200 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~~--~~~~~~~~~---~~~---l~~L~~L~l~~~~~~~~lp~  270 (542)
                      -++..++.+|+|.+.++++..+..+..+ ..|+.|.-.+.  .+.++....   +++   ...|.+.+.+.| .+..+-.
T Consensus       103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~  181 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDE  181 (1096)
T ss_pred             ceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHH
Confidence            3455667888888888877654333222 12333332221  111111100   110   124556666666 4555555


Q ss_pred             ccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccC
Q 037847          271 GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD  350 (542)
Q Consensus       271 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  350 (542)
                      ++.-++.|+.|||++|.++..- .+..|++|++|||+.| .+..+|.-....+ .|+.|.+++|.+.             
T Consensus       182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~-------------  245 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALT-------------  245 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHH-------------
Confidence            6667778888888888777764 6777888888888887 5666665212222 3778888777653             


Q ss_pred             CCcchhHhhccccCCceeeeEecc
Q 037847          351 GAEPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       351 ~~~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                          .+.++.+|++|+.|++++|-
T Consensus       246 ----tL~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  246 ----TLRGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             ----hhhhHHhhhhhhccchhHhh
Confidence                45566677777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=5.9e-06  Score=53.97  Aligned_cols=40  Identities=45%  Similarity=0.576  Sum_probs=23.9

Q ss_pred             CCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccch
Q 037847          277 SLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPH  317 (542)
Q Consensus       277 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~  317 (542)
                      +|++|++++|.|+.+|..+++|++|++|++++| .++.++.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            566666666666666666666666666666666 4444443

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.03  E-value=7e-07  Score=83.50  Aligned_cols=249  Identities=16%  Similarity=0.132  Sum_probs=134.9

Q ss_pred             hccCCCccEEEecCCCCCC----cCccccCCCCCCCEEeccCC---CC-CcccHH-------hhcCCCCCEEeccCCccc
Q 037847          248 FQSLSTLRVLSLRGNFPPS----TLPSGISGLVSLHHLDLSST---DI-TGLPQE-------LKALEKLRYLNLDYAFHL  312 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~---~i-~~lp~~-------i~~l~~L~~L~l~~~~~~  312 (542)
                      +..+..++.+++++|....    .+-+.+.+.+.|+.-+++.-   ++ .++|+.       +...++|++++|++|-.-
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            5577899999999995433    23445667778999999863   22 236654       345669999999999543


Q ss_pred             Cccch---hhcCCCCCCcEEeccCccccccccCCCCccccCCCcc------hhHhhccccCCceeeeEecchH--HHHHh
Q 037847          313 SIIPH---QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP------LMKELLGLKHLNVLSWSFGSSL--AVQKF  381 (542)
Q Consensus       313 ~~lp~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~L~~L~~l~~~~~~~~--~~~~l  381 (542)
                      ...+.   ..+.++.+|++|.+.+|.+... .   +    .....      .....++-..|+++...-+...  +...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-a---g----~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPE-A---G----GRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChh-H---H----HHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence            33332   3466789999999999986421 0   0    00000      1122334466777766644321  11111


Q ss_pred             hcCchhhccceeEEeccccCCCCC--ceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC
Q 037847          382 LKYPKLVSITQSVWVECGTYTRPP--FNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG  459 (542)
Q Consensus       382 ~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~  459 (542)
                      ....+..+.++.+.+.........  .....+..+++|+.|++.+|.++.-.-..+.    .....+++|+.|++++|.+
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La----kaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA----KALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH----HHhcccchheeeccccccc
Confidence            222222344444444333211111  1122455677777777777776541100000    1113356777777777776


Q ss_pred             --CCcchh-----hhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          460 --KDLTWL-----VFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       460 --~~~~~l-----~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                        .....+     ...|+|+.|.+.+|.++.-....-        ......-|.|+.|.+.+|.
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l--------a~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL--------AACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH--------HHHHhcchhhHHhcCCccc
Confidence              222221     136777777777766654321100        0123336777777777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=1.1e-05  Score=52.71  Aligned_cols=40  Identities=33%  Similarity=0.501  Sum_probs=28.9

Q ss_pred             CCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCccc
Q 037847          252 STLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLP  292 (542)
Q Consensus       252 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp  292 (542)
                      ++|++|++++| .+.++|..+++|++|++|++++|.++.+|
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            46778888888 67777766788888888888888777664

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=2.9e-05  Score=76.34  Aligned_cols=64  Identities=19%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             hccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccch
Q 037847          248 FQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPH  317 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~  317 (542)
                      +..+.+++.|++++| .+..+| .+  ..+|+.|.+++| .++.+|..+  ..+|++|++++|..+..+|.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence            445677888888877 677777 22  235777777765 566666554  24677777777755555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.83  E-value=3.7e-07  Score=92.95  Aligned_cols=128  Identities=25%  Similarity=0.294  Sum_probs=87.7

Q ss_pred             cccccceEEEeecCCcCCCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847          203 EEWEGAKRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL  281 (542)
Q Consensus       203 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L  281 (542)
                      ..|.++...++++|.+..++. +.-++.|+.|+++.|.+....  ++..+++|+.|||++| .+..+|.--..-.+|+.|
T Consensus       161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L  237 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLL  237 (1096)
T ss_pred             hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheee
Confidence            346667777777777766653 555677888888888776655  3778888888888888 667666322222348888


Q ss_pred             eccCCCCCcccHHhhcCCCCCEEeccCCccc--CccchhhcCCCCCCcEEeccCccc
Q 037847          282 DLSSTDITGLPQELKALEKLRYLNLDYAFHL--SIIPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                      ++++|.++++ .+|.+|.+|+.||++.|-..  .++-.  ++.|..|+.|.+.||++
T Consensus       238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence            8888877776 46778888888888887221  12222  55667777888877765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=2e-06  Score=69.56  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=79.2

Q ss_pred             CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY  303 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  303 (542)
                      +....+|...++++|.+.+.|+.+-.+++.++.|++.+| .+.++|..+..++.|+.|+++.|.+...|+.+..|.+|-.
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence            455667888899999998888887778888999999999 7889999999999999999999999889999888999999


Q ss_pred             EeccCCcccCccchh
Q 037847          304 LNLDYAFHLSIIPHQ  318 (542)
Q Consensus       304 L~l~~~~~~~~lp~~  318 (542)
                      |+..++ ....+|.+
T Consensus       128 Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  128 LDSPEN-ARAEIDVD  141 (177)
T ss_pred             hcCCCC-ccccCcHH
Confidence            988887 56667665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00028  Score=69.59  Aligned_cols=118  Identities=21%  Similarity=0.349  Sum_probs=76.1

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCc-ccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      +..+.++++|+++++.+..+|.+.  .+|++|.+.+| .++.++.. +  ..+|++|++++|..+..+|.+      |+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cce
Confidence            334567889999999888887432  46999999886 45555443 3  257999999998767777754      566


Q ss_pred             EeccCC---CCCcccHHhhcCC------------------CCCEEeccCCcccCccchhhcCCCCCCcEEeccCc
Q 037847          281 LDLSST---DITGLPQELKALE------------------KLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGC  334 (542)
Q Consensus       281 L~l~~~---~i~~lp~~i~~l~------------------~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~  334 (542)
                      |++..+   .+..+|+++..|.                  +|++|++++|.. ..+|.. +.  .+|++|.+..+
T Consensus       117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~-i~LP~~-LP--~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN-IILPEK-LP--ESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc-ccCccc-cc--ccCcEEEeccc
Confidence            667654   3566777765542                  566677766632 234432 22  35666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=4.3e-05  Score=70.20  Aligned_cols=81  Identities=26%  Similarity=0.324  Sum_probs=37.8

Q ss_pred             CCCCccEEEccCccccccc--chhhccCCCccEEEecCCCC---CCcCccccCCCCCCCEEeccCCCCC--cccHHhhcC
Q 037847          226 TCPRLVTLLLDGNRIEEIT--DGFFQSLSTLRVLSLRGNFP---PSTLPSGISGLVSLHHLDLSSTDIT--GLPQELKAL  298 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~---~~~lp~~i~~l~~L~~L~l~~~~i~--~lp~~i~~l  298 (542)
                      .+..++.+++.+|.+++..  ...+..++.|++|+++.|..   +..+|   -.+.+|+.|-|.++.+.  ..-..+..+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            4455666666666543221  22245566666666666521   11222   23445555555555332  133334444


Q ss_pred             CCCCEEeccCC
Q 037847          299 EKLRYLNLDYA  309 (542)
Q Consensus       299 ~~L~~L~l~~~  309 (542)
                      +.++.|.++.|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            44444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.50  E-value=7.4e-05  Score=79.79  Aligned_cols=130  Identities=22%  Similarity=0.285  Sum_probs=86.0

Q ss_pred             ccceEEEeecCCcCC--CC-C-CCCCCCccEEEccCcccccc-cchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          206 EGAKRISLTANGIGS--LS-E-IPTCPRLVTLLLDGNRIEEI-TDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~--~~-~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      .++++|++.+...-.  .+ . ..-+|.|++|.+.+-.+... ......++++|+.||++++ .+..+ ..+++|++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence            678888887753321  11 1 24578889988888755322 2333567889999999998 67777 58888999998


Q ss_pred             EeccCCCCCcc--cHHhhcCCCCCEEeccCCcccCcc--ch---hhcCCCCCCcEEeccCcccc
Q 037847          281 LDLSSTDITGL--PQELKALEKLRYLNLDYAFHLSII--PH---QLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       281 L~l~~~~i~~l--p~~i~~l~~L~~L~l~~~~~~~~l--p~---~~~~~l~~L~~L~l~~~~~~  337 (542)
                      |.+++-.+..-  -..+.+|++|++||+|........  ..   +.-..|++||.|+++++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            88877666542  245678889999998886433221  11   00224778888888776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.48  E-value=0.00019  Score=62.47  Aligned_cols=100  Identities=31%  Similarity=0.396  Sum_probs=62.7

Q ss_pred             cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc--cccCCCCCCCEEecc
Q 037847          207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP--SGISGLVSLHHLDLS  284 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~  284 (542)
                      ....+++.+|.+..++.+..++.|.+|.+.+|.++.+.+..-..+++|..|.+.+| .+..+-  .-+..++.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence            45567778888877777888888888888888888777775555677888888887 444332  123455566666666


Q ss_pred             CCCCCcccH----HhhcCCCCCEEecc
Q 037847          285 STDITGLPQ----ELKALEKLRYLNLD  307 (542)
Q Consensus       285 ~~~i~~lp~----~i~~l~~L~~L~l~  307 (542)
                      +|.++.-+.    .+.++++|++||..
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehh
Confidence            655443221    13444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.31  E-value=3.1e-05  Score=62.85  Aligned_cols=105  Identities=28%  Similarity=0.343  Sum_probs=80.5

Q ss_pred             ccEEEccCcccccccc--hhhccCCCccEEEecCCCCCCcCccccCC-CCCCCEEeccCCCCCcccHHhhcCCCCCEEec
Q 037847          230 LVTLLLDGNRIEEITD--GFFQSLSTLRVLSLRGNFPPSTLPSGISG-LVSLHHLDLSSTDITGLPQELKALEKLRYLNL  306 (542)
Q Consensus       230 L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~lp~~i~~-l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  306 (542)
                      +..++++.|.+-.++.  ..+.+...|+..+|++| ...++|+.|.. .+.+.+|++.+|.|+++|..+..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            4456666665543322  22556678888999999 78888888764 45889999999999999999999999999999


Q ss_pred             cCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      +.| .+...|.- +-.|.+|-.|+..++.+.
T Consensus       108 ~~N-~l~~~p~v-i~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  108 RFN-PLNAEPRV-IAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccC-ccccchHH-HHHHHhHHHhcCCCCccc
Confidence            998 56667764 566888888888777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.00024  Score=75.95  Aligned_cols=126  Identities=18%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             cccceEEEeecCCcCCC---CCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc--CccccCCCCCCC
Q 037847          205 WEGAKRISLTANGIGSL---SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST--LPSGISGLVSLH  279 (542)
Q Consensus       205 ~~~l~~l~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--lp~~i~~l~~L~  279 (542)
                      ++.+++|.+.+-.+..-   .-..++++|+.||+++++++.+..  ++.+++|++|.+++- ....  --..+.+|++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCC-CCCchhhHHHHhcccCCC
Confidence            36777787777554321   124678888888888888877633  788888888887776 3332  123566788888


Q ss_pred             EEeccCCCCCcccHH-------hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847          280 HLDLSSTDITGLPQE-------LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG  333 (542)
Q Consensus       280 ~L~l~~~~i~~lp~~-------i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  333 (542)
                      .||+|+..-..-+..       -..|++|+.||.+++..-..+-...+..=++|+.+...+
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence            888887643332221       134788888888877433333333333334555554433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.26  E-value=6e-05  Score=68.39  Aligned_cols=244  Identities=19%  Similarity=0.133  Sum_probs=110.7

Q ss_pred             CCCccEEEccCccccccc----chhhccCCCccEEEecCCCC---CCcCc-------cccCCCCCCCEEeccCCCCCc-c
Q 037847          227 CPRLVTLLLDGNRIEEIT----DGFFQSLSTLRVLSLRGNFP---PSTLP-------SGISGLVSLHHLDLSSTDITG-L  291 (542)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~---~~~lp-------~~i~~l~~L~~L~l~~~~i~~-l  291 (542)
                      +..+..++++||.+..-.    ...+..-++|++.+++.-..   ...+|       +.+-.|++|+..+|+.|.+.. .
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            445555666666443211    12234445666666655411   11222       234466777777777775543 3


Q ss_pred             cH----HhhcCCCCCEEeccCCcccCccchhhcC-------------CCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847          292 PQ----ELKALEKLRYLNLDYAFHLSIIPHQLIS-------------CFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP  354 (542)
Q Consensus       292 p~----~i~~l~~L~~L~l~~~~~~~~lp~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  354 (542)
                      |+    -|.+-+.|.||.+++| .+..+..+-|+             .-+.|+...+..|.+..           .....
T Consensus       109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-----------gs~~~  176 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-----------GSKEL  176 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-----------CcHHH
Confidence            33    3456667777777777 34333222122             34566666665555421           11112


Q ss_pred             hhHhhccccCCceeeeEecchHHH--HH-hhcCchhhccceeEEeccccCCCCCcee--cccccccccceeeecccCccc
Q 037847          355 LMKELLGLKHLNVLSWSFGSSLAV--QK-FLKYPKLVSITQSVWVECGTYTRPPFNV--LHLAYMENLQELELESCNLEE  429 (542)
Q Consensus       355 ~~~~l~~L~~L~~l~~~~~~~~~~--~~-l~~~~~~~~~l~~l~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~  429 (542)
                      +-..+.+-.+|+.+.+..++....  .. .+........++.|++.+...+......  ..+...+.|++|.+..|-+..
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            233344446677777766553211  11 1111122333444454443321111100  112333456666666665543


Q ss_pred             eeeccchhhcccccccccccCEEEEccCCC--CC-----cchh--hhccCcceEEEeccchhhh
Q 037847          430 MKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KD-----LTWL--VFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       430 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~-----~~~l--~~l~~L~~L~L~~~~l~~~  484 (542)
                      -.....  ........+|+|..|...++..  ..     ++.+  ..+|-|..|.+.+|.+.+.
T Consensus       257 ~G~~~v--~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         257 EGVKSV--LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             ccHHHH--HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            211110  0001112356666666666544  11     1111  2456666666666666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=1.6e-05  Score=72.25  Aligned_cols=101  Identities=22%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             ccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhccccccccc
Q 037847          414 MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDI  493 (542)
Q Consensus       414 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  493 (542)
                      +.+.++|+..||.+..+.+-          ..++.|+.|.|+.|++..+.++..+.+|++|+|..|.|.++...      
T Consensus        18 l~~vkKLNcwg~~L~DIsic----------~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL------   81 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISIC----------EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL------   81 (388)
T ss_pred             HHHhhhhcccCCCccHHHHH----------HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH------
Confidence            45677888888888764321          22788899999998888888888899999999998888877542      


Q ss_pred             ccccCCcCCCCCccceeecccCCcccccCCC-----CCCCCCcceEe
Q 037847          494 SEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-----PQPFPKLKKIQ  535 (542)
Q Consensus       494 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~p~L~~L~  535 (542)
                           .....+|+|+.|.|...|--..-+..     ...+|+|++|+
T Consensus        82 -----~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   82 -----EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             -----HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence                 26667899999988876654432221     22488888876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.09  E-value=0.0007  Score=59.03  Aligned_cols=106  Identities=24%  Similarity=0.272  Sum_probs=66.4

Q ss_pred             CCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhc-CCCCCEEeccCCcccCc---cchhhcCCCCCCc
Q 037847          252 STLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA-LEKLRYLNLDYAFHLSI---IPHQLISCFSKLE  327 (542)
Q Consensus       252 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~-l~~L~~L~l~~~~~~~~---lp~~~~~~l~~L~  327 (542)
                      ...-.+||++| .+..++ .+..+..|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+| .+..   +..  +..+++|+
T Consensus        42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPKLE  116 (233)
T ss_pred             cccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCccc
Confidence            34556677777 555555 566777777888877777776555544 456888888777 3333   222  44567788


Q ss_pred             EEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecc
Q 037847          328 VLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                      +|.+-+|+..            +....-..-+..+++|+.|+.....
T Consensus       117 ~Ltll~Npv~------------~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  117 YLTLLGNPVE------------HKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeeecCCchh------------cccCceeEEEEecCcceEeehhhhh
Confidence            8877777654            2222333345667777777776443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.75  E-value=0.00026  Score=73.95  Aligned_cols=111  Identities=27%  Similarity=0.305  Sum_probs=54.8

Q ss_pred             CCCCccEEEccCc-ccccc-cchhhccCCCccEEEecCC-CCCCcCc----cccCCCCCCCEEeccCCC-CCc--ccHHh
Q 037847          226 TCPRLVTLLLDGN-RIEEI-TDGFFQSLSTLRVLSLRGN-FPPSTLP----SGISGLVSLHHLDLSSTD-ITG--LPQEL  295 (542)
Q Consensus       226 ~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~lp----~~i~~l~~L~~L~l~~~~-i~~--lp~~i  295 (542)
                      .++.|+.+.+.++ .+... .......+++|+.|+++++ ......+    .....+.+|+.|+++++. ++.  +....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3566666666665 22221 1122456677777777662 1111111    122345666677776664 443  22222


Q ss_pred             hcCCCCCEEeccCCcccCcc-chhhcCCCCCCcEEeccCccc
Q 037847          296 KALEKLRYLNLDYAFHLSII-PHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       296 ~~l~~L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~~~  336 (542)
                      ..+++|++|.+.+|..++.- -..+..++++|++|++++|..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            33666777766666432211 112234556677777766654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.74  E-value=0.00091  Score=60.82  Aligned_cols=81  Identities=28%  Similarity=0.296  Sum_probs=40.5

Q ss_pred             CCCccEEEccCcccccccchhhccCCCccEEEecCC--CCCCcCccccCCCCCCCEEeccCCCCCcc--cHHhhcCCCCC
Q 037847          227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN--FPPSTLPSGISGLVSLHHLDLSSTDITGL--PQELKALEKLR  302 (542)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~lp~~i~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~  302 (542)
                      +..|..|.+.+..++.+..  +..+++|++|.++.|  +....++.....+++|++|++++|.|+.+  -+.+.++.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3444455555554443333  445566666666665  33334443344446666666666654431  12234555555


Q ss_pred             EEeccCC
Q 037847          303 YLNLDYA  309 (542)
Q Consensus       303 ~L~l~~~  309 (542)
                      .|++.+|
T Consensus       120 ~Ldl~n~  126 (260)
T KOG2739|consen  120 SLDLFNC  126 (260)
T ss_pred             hhhcccC
Confidence            5555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.65  E-value=0.00065  Score=61.85  Aligned_cols=89  Identities=24%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             hccCCCccEEEecCCCCCC----cCccccCCCCCCCEEeccCC---CCC-cccH-------HhhcCCCCCEEeccCCccc
Q 037847          248 FQSLSTLRVLSLRGNFPPS----TLPSGISGLVSLHHLDLSST---DIT-GLPQ-------ELKALEKLRYLNLDYAFHL  312 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~---~i~-~lp~-------~i~~l~~L~~L~l~~~~~~  312 (542)
                      +..+..+..++|++|...+    .+...|.+-.+|+..+++.-   +.. ++|+       .+-++++|+..++++|..-
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3457889999999995443    34445667788998888763   222 2443       3568899999999999665


Q ss_pred             Cccch---hhcCCCCCCcEEeccCccc
Q 037847          313 SIIPH---QLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       313 ~~lp~---~~~~~l~~L~~L~l~~~~~  336 (542)
                      ...|.   ..|++-+.|.||.+.+|.+
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCC
Confidence            55554   3467778999999998875

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.56  E-value=0.0011  Score=60.22  Aligned_cols=102  Identities=27%  Similarity=0.372  Sum_probs=58.4

Q ss_pred             ccceEEEeecCCcCCCCCCCCCCCccEEEccCc--ccccccchhhccCCCccEEEecCCCCCCcCccc---cCCCCCCCE
Q 037847          206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGN--RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG---ISGLVSLHH  280 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~---i~~l~~L~~  280 (542)
                      ..+..+++.+..++.+..+..+++|+.|.++.|  ....-.......+++|++|++++| .+.. +++   ...+.+|..
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhh
Confidence            455666666666666666777777777777777  322211222445577777777777 3332 222   345666667


Q ss_pred             EeccCCCCCccc----HHhhcCCCCCEEeccCC
Q 037847          281 LDLSSTDITGLP----QELKALEKLRYLNLDYA  309 (542)
Q Consensus       281 L~l~~~~i~~lp----~~i~~l~~L~~L~l~~~  309 (542)
                      |++..|..+.+-    ..+.-+++|.+|+-...
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            777776555431    22344556666654443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.00039  Score=63.50  Aligned_cols=76  Identities=32%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccH--HhhcCCCCCEEecc
Q 037847          230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLD  307 (542)
Q Consensus       230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~  307 (542)
                      .+.|+..||.+.++.-  ..+|+.|++|.|+-| .+..+. .+..++.|+.|.|+.|.|..+.+  -+.++++|+.|.|.
T Consensus        21 vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             hhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            3444444444443321  345555555555555 344443 34555556666665555555432  24455566666665


Q ss_pred             CC
Q 037847          308 YA  309 (542)
Q Consensus       308 ~~  309 (542)
                      .|
T Consensus        97 EN   98 (388)
T KOG2123|consen   97 EN   98 (388)
T ss_pred             cC
Confidence            54

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.84  E-value=0.0012  Score=68.94  Aligned_cols=242  Identities=21%  Similarity=0.119  Sum_probs=130.1

Q ss_pred             hccCCCccEEEecCCCCCCc--CccccCCCCCCCEEeccCC--CCCcc----cHHhhcCCCCCEEeccCCcccCccch-h
Q 037847          248 FQSLSTLRVLSLRGNFPPST--LPSGISGLVSLHHLDLSST--DITGL----PQELKALEKLRYLNLDYAFHLSIIPH-Q  318 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~~--lp~~i~~l~~L~~L~l~~~--~i~~l----p~~i~~l~~L~~L~l~~~~~~~~lp~-~  318 (542)
                      ...++.|+.|.+.++..+..  +-.....+++|+.|+++++  .+...    +.....+.+|+.|+++.+..+...-- .
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            34578899999998866665  3345678899999999873  22222    23455678899999998864443322 2


Q ss_pred             hcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEecc
Q 037847          319 LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVEC  398 (542)
Q Consensus       319 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~  398 (542)
                      +...+++|++|.+.+|...             .......-..++++|+.|+++++.......+.........++.+.+..
T Consensus       264 l~~~c~~L~~L~l~~c~~l-------------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNL-------------TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHhhCCCcceEccCCCCcc-------------chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            2234788999997777621             112233334457778888888776553333322222222222222111


Q ss_pred             ccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-C-C-cchhhhccCcceEE
Q 037847          399 GTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-K-D-LTWLVFVQNLKQLN  475 (542)
Q Consensus       399 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~-~-~~~l~~l~~L~~L~  475 (542)
                                  ...++.++.+.+.++.....     ..........+++++.+.+..|.. . . ...+.++|+|.   
T Consensus       331 ------------~~~c~~l~~~~l~~~~~~~~-----d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~---  390 (482)
T KOG1947|consen  331 ------------LNGCPSLTDLSLSGLLTLTS-----DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT---  390 (482)
T ss_pred             ------------cCCCccHHHHHHHHhhccCc-----hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc---
Confidence                        11133444444443322110     000112234567777777777765 1 1 12233444441   


Q ss_pred             EeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCC--CCCCcceEeeccCCC
Q 037847          476 MQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQ--PFPKLKKIQAFHCRQ  541 (542)
Q Consensus       476 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~p~L~~L~i~~C~~  541 (542)
                            ..+..             ....+..++.|.+..|.....-.....  .+.+++.+++.+|+.
T Consensus       391 ------~~l~~-------------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  391 ------ESLEL-------------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             ------hHHHH-------------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence                  11110             122233488999998876654222111  167788888888874

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.80  E-value=0.0028  Score=34.30  Aligned_cols=16  Identities=44%  Similarity=0.760  Sum_probs=6.3

Q ss_pred             CCEEeccCCCCCcccH
Q 037847          278 LHHLDLSSTDITGLPQ  293 (542)
Q Consensus       278 L~~L~l~~~~i~~lp~  293 (542)
                      |++|++++|.++.+|+
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3334444443333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.90  E-value=0.35  Score=54.95  Aligned_cols=148  Identities=16%  Similarity=0.274  Sum_probs=97.4

Q ss_pred             eeecC----CCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhccc
Q 037847            5 KLEVY----SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSA   80 (542)
Q Consensus         5 ~~~l~----~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~   80 (542)
                      ..++.    +++.+|+.++|....+..-      -.+...+|.+.|+|.|+++..++..++......  ......+    
T Consensus       176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~----  243 (903)
T PRK04841        176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRL----  243 (903)
T ss_pred             ceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhh----
Confidence            44556    8999999999987654321      135678999999999999999988876532100  0101111    


Q ss_pred             CCCCCC-hHHHHHHHHhh-cCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccccc
Q 037847           81 SKFSGM-KEEVFSRLKFS-YDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEE  158 (542)
Q Consensus        81 ~~~~~~-~~~~~~~l~~s-y~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~~~  158 (542)
                         .+. ...+...+.-. ++.||+ +.+..+...|+++   .|+. .+...     +... +.+...++++...++|..
T Consensus       244 ---~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~-~l~~~-----l~~~-~~~~~~L~~l~~~~l~~~  309 (903)
T PRK04841        244 ---AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMND-ALIVR-----VTGE-ENGQMRLEELERQGLFIQ  309 (903)
T ss_pred             ---cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCH-HHHHH-----HcCC-CcHHHHHHHHHHCCCeeE
Confidence               110 12455544433 789999 8999999999987   3442 22221     1111 456788999999998753


Q ss_pred             ---cCCCeEEeehHHHHHHHHHH
Q 037847          159 ---EGDDHVKMHDMIREMSLWIA  178 (542)
Q Consensus       159 ---~~~~~~~mhdl~~~~~~~i~  178 (542)
                         +....|+.|++++++...-.
T Consensus       310 ~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        310 RMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             eecCCCCEEehhHHHHHHHHHHH
Confidence               23346889999999987643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.80  E-value=0.094  Score=43.42  Aligned_cols=102  Identities=14%  Similarity=0.318  Sum_probs=42.7

Q ss_pred             CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCcccHH-hhcCCCC
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQE-LKALEKL  301 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L  301 (542)
                      +.++++|+.+.+.. .+..+....|..+.+|+.+.+.++  +..++ ..+..+..|+.+.+.. .+..++.. +..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            44555566655553 344555555666666666666553  33332 2344555566666644 34443332 3346666


Q ss_pred             CEEeccCCcccCccchhhcCCCCCCcEEecc
Q 037847          302 RYLNLDYAFHLSIIPHQLISCFSKLEVLRLC  332 (542)
Q Consensus       302 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~  332 (542)
                      +.+.+..+  +..++...+.+. +|+.+.+.
T Consensus        84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence            66666443  344555445554 56666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.45  E-value=0.016  Score=31.26  Aligned_cols=21  Identities=38%  Similarity=0.618  Sum_probs=12.4

Q ss_pred             CccEEEecCCCCCCcCccccCC
Q 037847          253 TLRVLSLRGNFPPSTLPSGISG  274 (542)
Q Consensus       253 ~L~~L~l~~~~~~~~lp~~i~~  274 (542)
                      +|++|++++| .++.+|++|++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            3566666666 45566655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.38  E-value=0.0045  Score=54.13  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             ccccCEEEEccCCC---CCcchhh-hccCcceEEEec-cchhhhcccccccccccccCCcCCCCCccceeecccCCccc
Q 037847          446 FRNLNTVVLRSCRG---KDLTWLV-FVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK  519 (542)
Q Consensus       446 l~~L~~L~L~~c~~---~~~~~l~-~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  519 (542)
                      ++.++.|.+.+|..   ..+..++ -.|+|+.|+|++ ..|++-.-            .....|++|+.|.|.+++...
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhhh
Confidence            55566666666655   1222222 246666666665 55554432            144556666666666655443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.16  E-value=0.034  Score=27.81  Aligned_cols=15  Identities=47%  Similarity=0.687  Sum_probs=5.3

Q ss_pred             CCCEEeccCCCCCcc
Q 037847          277 SLHHLDLSSTDITGL  291 (542)
Q Consensus       277 ~L~~L~l~~~~i~~l  291 (542)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.10  E-value=0.2  Score=41.43  Aligned_cols=115  Identities=18%  Similarity=0.355  Sum_probs=55.0

Q ss_pred             ccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCE
Q 037847          204 EWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHH  280 (542)
Q Consensus       204 ~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~  280 (542)
                      ...+++.+.+.. .+..+.  .+.++++|+.+.+..+ +..+....|..++.|+.+.+.++  ...++ ..+..+.+|+.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccc
Confidence            334666666653 455443  3677778888888764 66666666788878888888653  33333 34556788888


Q ss_pred             EeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCC
Q 037847          281 LDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKL  326 (542)
Q Consensus       281 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L  326 (542)
                      +++..+ +..++.. +.+. +|+.+.+..  .+..++...+.+.++|
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            888654 5555433 4454 777777765  3455565555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.72  E-value=0.0071  Score=54.05  Aligned_cols=86  Identities=20%  Similarity=0.184  Sum_probs=69.3

Q ss_pred             CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCC
Q 037847          223 EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLR  302 (542)
Q Consensus       223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~  302 (542)
                      ++..+...+.|+++.|++...... |+.+..|..|+++.+ .+..+|++++.+..++.+++..|..+.+|.+.+++++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence            456677788888888877665554 677778888888887 678888888888888888888888888898888899999


Q ss_pred             EEeccCCc
Q 037847          303 YLNLDYAF  310 (542)
Q Consensus       303 ~L~l~~~~  310 (542)
                      +++..++.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            88888875

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=90.68  E-value=0.58  Score=46.01  Aligned_cols=135  Identities=13%  Similarity=0.095  Sum_probs=78.4

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF   83 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~   83 (542)
                      .+++++++++++..+++.+.+.......+   .+....|++.|+|.|-.+..+...+.      .|-.+.   ...... 
T Consensus       173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~-  239 (328)
T PRK00080        173 IVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT-  239 (328)
T ss_pred             eeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC-
Confidence            35889999999999999998865432232   36789999999999965544444322      222110   000000 


Q ss_pred             CCChHHHHHHHHhhcCCCCchhhhHHHh-hhccCCCCcccChHHHHHHHHHcCCccccchhchHHH-HHHHhccccc
Q 037847           84 SGMKEEVFSRLKFSYDSLSTDELRSCLL-YCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFID-DLLQACLLEE  158 (542)
Q Consensus        84 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~-~L~~~~l~~~  158 (542)
                      ...-......+...|..|++ ..+..+. ....|+.+ .+..+.+....   |  ...+..+..++ .|++.+|++.
T Consensus       240 ~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--~~~~~~~~~~e~~Li~~~li~~  309 (328)
T PRK00080        240 KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--EERDTIEDVYEPYLIQQGFIQR  309 (328)
T ss_pred             HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--CCcchHHHHhhHHHHHcCCccc
Confidence            01111445556677888887 4555553 55556554 45544442221   1  11144555666 8888888875

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.57  E-value=0.28  Score=27.59  Aligned_cols=19  Identities=37%  Similarity=0.642  Sum_probs=10.4

Q ss_pred             CCCCEEeccCCCCCcccHH
Q 037847          276 VSLHHLDLSSTDITGLPQE  294 (542)
Q Consensus       276 ~~L~~L~l~~~~i~~lp~~  294 (542)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.57  E-value=0.28  Score=27.59  Aligned_cols=19  Identities=37%  Similarity=0.642  Sum_probs=10.4

Q ss_pred             CCCCEEeccCCCCCcccHH
Q 037847          276 VSLHHLDLSSTDITGLPQE  294 (542)
Q Consensus       276 ~~L~~L~l~~~~i~~lp~~  294 (542)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.75  E-value=0.03  Score=49.12  Aligned_cols=62  Identities=21%  Similarity=0.392  Sum_probs=37.8

Q ss_pred             ccccccccceeeecccCccc-eeeccchhhcccccccccccCEEEEccCCC---CCcchhhhccCcceEEEec
Q 037847          410 HLAYMENLQELELESCNLEE-MKIDSTEEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQG  478 (542)
Q Consensus       410 ~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~  478 (542)
                      .+..++.++.|.+..|.... ..++.+.       ...++|+.|+|++|..   ..+.++..+++|+.|.|.+
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLG-------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhc-------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            44555666666666665443 1111111       1367778888887766   5566677777777777776

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.34  E-value=0.012  Score=52.53  Aligned_cols=95  Identities=23%  Similarity=0.138  Sum_probs=78.5

Q ss_pred             ccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhc
Q 037847          241 EEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLI  320 (542)
Q Consensus       241 ~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~  320 (542)
                      ..++-..+..++..++||++.+ ....+-..++.+..|..|+++.+.+.-+|+..+.+..++++++..| ..+..|.. .
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~  107 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-Q  107 (326)
T ss_pred             cccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-c
Confidence            3444444677889999999999 5556666788888999999999999999999999999999998877 78889987 8


Q ss_pred             CCCCCCcEEeccCccccc
Q 037847          321 SCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       321 ~~l~~L~~L~l~~~~~~~  338 (542)
                      ++++.++.++.-++.+..
T Consensus       108 ~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cccCCcchhhhccCcchH
Confidence            999999999988776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.01  E-value=0.61  Score=26.14  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=16.4

Q ss_pred             CCCCCEEeccCCcccCccchhhc
Q 037847          298 LEKLRYLNLDYAFHLSIIPHQLI  320 (542)
Q Consensus       298 l~~L~~L~l~~~~~~~~lp~~~~  320 (542)
                      |++|++|++++| .+..+|.+++
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHc
Confidence            467888888888 6777877643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.01  E-value=0.61  Score=26.14  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=16.4

Q ss_pred             CCCCCEEeccCCcccCccchhhc
Q 037847          298 LEKLRYLNLDYAFHLSIIPHQLI  320 (542)
Q Consensus       298 l~~L~~L~l~~~~~~~~lp~~~~  320 (542)
                      |++|++|++++| .+..+|.+++
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHc
Confidence            467888888888 6777877643

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.15  E-value=0.49  Score=26.59  Aligned_cols=15  Identities=20%  Similarity=0.636  Sum_probs=10.5

Q ss_pred             CCCcceEeeccCCCC
Q 037847          528 FPKLKKIQAFHCRQL  542 (542)
Q Consensus       528 ~p~L~~L~i~~C~~L  542 (542)
                      +|+|++|++++|+++
T Consensus         1 c~~L~~L~l~~C~~i   15 (26)
T smart00367        1 CPNLRELDLSGCTNI   15 (26)
T ss_pred             CCCCCEeCCCCCCCc
Confidence            467777777777753

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=84.95  E-value=4.2  Score=38.56  Aligned_cols=57  Identities=14%  Similarity=0.215  Sum_probs=43.9

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCC-HHHHHHHHHHHhCCChhHHHHHHHHH
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTS-IPELAETLARECGGLPLALKIVGRAM   60 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~-~~~~~~~i~~kc~GlPlai~~ig~~L   60 (542)
                      ..+++++++.+|..+++...+.......... -.+..+.|++.++|.|..|..++..+
T Consensus       185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            3578999999999999998774322111122 35789999999999999999888887

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=83.96  E-value=29  Score=33.49  Aligned_cols=135  Identities=17%  Similarity=0.086  Sum_probs=75.5

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF   83 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~   83 (542)
                      .+++++++++++..+++.+.+.......+   .+....|++.|+|.|-.+..++..+        |..+. ........ 
T Consensus       152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~it-  218 (305)
T TIGR00635       152 IILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKIIN-  218 (305)
T ss_pred             eEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCcC-
Confidence            35789999999999999998854332222   4667899999999997765555433        11100 00000000 


Q ss_pred             CCChHHHHHHHHhhcCCCCchhhhHHHh-hhccCCCCcccChHHHHHHHHHcCCccccchhchHHH-HHHHhccccc
Q 037847           84 SGMKEEVFSRLKFSYDSLSTDELRSCLL-YCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFID-DLLQACLLEE  158 (542)
Q Consensus        84 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~-~L~~~~l~~~  158 (542)
                      ...-..+...+..+|..+++ +-+..+. ..+.+..+ .+..+++....   |.-.  ...+..++ .|++++++..
T Consensus       219 ~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~~~--~~~~~~~e~~Li~~~li~~  288 (305)
T TIGR00635       219 RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---GEDA--DTIEDVYEPYLLQIGFLQR  288 (305)
T ss_pred             HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---CCCc--chHHHhhhHHHHHcCCccc
Confidence            00001333335667888887 4444443 44555432 34433332211   2111  45666677 6999999975

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	542
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		4e-06
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-04

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 203 EEWEGAKRISLTANGI-----GSLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLR 255
           EE      +S   NGI     GSL+ IP+     + +L L  NRI  I++   Q    L+
Sbjct: 20  EESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQ 79
Query: 256 VLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSI 314
            L L  N   +      S L SL HLDLS   ++ L     K L  L +LNL    + ++
Sbjct: 80  ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139
Query: 315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKE 344
               L S  +KL++LR+     F  I+ K+
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 211 ISLTANGI-----GSLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263
           +S   NGI     GSL+ IP+     + +L L  NRI  I++   Q    L+ L L  N 
Sbjct: 2   LSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 61
Query: 264 PPSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISC 322
             +      S L SL HLDLS   ++ L     K L  L +LNL    + ++    L S 
Sbjct: 62  INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 121
Query: 323 FSKLEVLRLCGCGRFGVIKGKE 344
            +KL++LR+     F  I+ K+
Sbjct: 122 LTKLQILRVGNMDTFTKIQRKD 143

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRG 261
           ++     + ++L  N +  +S +     L  L+L GN+++ + +G F  L+ L+ L L  
Sbjct: 59  IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 262 NFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQL 319
           N   S LP G+   L +L +L+L+   +  LP+ +   L  L  L+L Y   L  +P  +
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGV 176
Query: 320 ISCFSKLEVLRL 331
               ++L+ LRL
Sbjct: 177 FDKLTQLKDLRL 188

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 205 WEGAKRISLTANGIGSLSEIPTCPRLVTLL---LDGNRIEEITDGFFQSLSTLRVLSLRG 261
           +EG   +     G+ +L +IP    LV L    L GNR++ I  G FQ L++LR L L  
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 262 NFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDY 308
               +   +    L SL  L+LS  ++  LP +L   L +L  ++L++
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNH 259

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	542
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-29
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  119 bits (300), Expect = 8e-29
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 20/177 (11%)

Query: 11  LAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWK 70
           L  +K  E+               +PE A ++ +EC G PL + ++G  ++       W+
Sbjct: 286 LGKEKGLEILS----LFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWE 339

Query: 71  RAINKMRTSASKF-----SGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKR 125
             + +++    K      S   E +   +  S + L   +++       +  +D ++P +
Sbjct: 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTK 398

Query: 126 ELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHV---KMHDMIREMSLWIAC 179
            L   W  E          D + + +   LL  + +       +HD+  +      C
Sbjct: 399 VLCILWDMETEE-----VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  115 bits (288), Expect = 2e-27
 Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 22/267 (8%)

Query: 4   EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63
           E +EV SL  D+ ++  +       +       ++         G P  L +  ++ + +
Sbjct: 286 EFIEVTSLEIDECYDFLEAY--GMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343

Query: 64  RKVGDWKRAINKMRTSASK-----FSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPE 118
                  +  NK+ +              + +   L+   + LS DE RS L +  + P 
Sbjct: 344 TFE-KMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLS-DEDRSALAFAVVMPP 401

Query: 119 DYEIPKRELIDYWISEGFVYD----FDDGCDFIDDLLQACLLEEEGDDHV---KMHDMIR 171
             +IP +        +    +     D+  D +  L +   L       V   K+  +I 
Sbjct: 402 GVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIH 461

Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLV 231
                +     +   N +     +L E          + I          S     P+  
Sbjct: 462 MFLKHVVD--AQTIANGISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKTT 519

Query: 232 TLLL----DGNRIEEITDGFFQSLSTL 254
              +    D  +  ++   F+ SL   
Sbjct: 520 EETVIRPEDFPKFMQLHQKFYDSLKNF 546

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 57/340 (16%), Positives = 114/340 (33%), Gaps = 43/340 (12%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K + L+ N I  +    +  C  L  L+L  +RI  I    F SL +L  L L  N   S
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS 87

Query: 267 TLPSG-ISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCF 323
           +L S     L SL +L+L       L        L  L+ L +      S I     +  
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 324 SKLEVLRLCGCGRFGVIKGKEGNVL---CDGAEPLMKELLGLK-HLNVLSWSFGSSLAVQ 379
           + L  L +            +   L      +   ++++  L  HL+  ++       + 
Sbjct: 148 TSLNELEI------------KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 380 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK 439
             ++Y +L     +            F    L   E    ++  +     +  +S  E+ 
Sbjct: 196 SSVRYLELRDTNLA-----------RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 440 KLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS----DISE 495
           KL       L+ V    C    L         +   +      E +++ +L      +  
Sbjct: 245 KLL-RYILELSEVEFDDCTLNGLGDF---NPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 496 VIGSEHNFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKI 534
            + + ++   +++ +T+   + +  V  +  Q    L+ +
Sbjct: 301 DLSTVYSLLEKVKRITV-ENSKVFLVPCSFSQHLKSLEFL 339

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 55/328 (16%), Positives = 102/328 (31%), Gaps = 60/328 (18%)

Query: 220 SLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
           S + IP+     + +L L  N+I  I  G  ++ + L+VL L+ +   +T+       L 
Sbjct: 16  SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLG 74

Query: 277 SLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335
           SL HLDLS   ++ L       L  L+YLNL    + ++    L    + L+ LR+    
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVW 395
            F  I+                +  GL  LN L             +K   L +      
Sbjct: 135 TFSEIRR--------------IDFAGLTSLNELE------------IKALSLRNYQSQS- 167

Query: 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455
                        +      ++  L L               + ++F +   ++  + LR
Sbjct: 168 ----------LKSIR-----DIHHLTLHLSES--------AFLLEIFADILSSVRYLELR 204

Query: 456 SCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDIS-EVIGSEHNFFPRLEYLTMWR 514
                   +     +     M+            L+D S   +     +   L  +    
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLA----FRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 515 GTNLKSVYPNPQPFPKLKKIQAFHCRQL 542
            T       NP     + ++       +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTI 288

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 213 LTANGIGSLSEIPTCPRLVTLLLDGNRIEEI--TDGFFQSLSTLRVLSLRGN-FPPSTLP 269
           +    + + +     P L TL+L  N +  +  T     +L  L  L +  N F    +P
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF--HPMP 403

Query: 270 SGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVL 329
                   +  L+LSST I  +   +   + L  L++    +L      L     +L+ L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSN-NNLDSFSLFL----PRLQEL 456

Query: 330 RLCGC 334
            +   
Sbjct: 457 YISRN 461

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 45/341 (13%), Positives = 100/341 (29%), Gaps = 80/341 (23%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
             +      I  LSE     C        + +  + +++       T+R L +   +   
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDY-AF-HLSIIPHQLISCF 323
            L +  S L  +  + + ++ +  +P    + L+ L +L+L         +        +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 324 SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLK 383
             L+ L L        ++             ++  L  L  L+ +S +            
Sbjct: 361 PSLQTLVLSQN-HLRSMQKTGE---------ILLTLKNLTSLD-ISRN------------ 397

Query: 384 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFR 443
                 +              P +       E ++ L L S  +             +  
Sbjct: 398 --TFHPM--------------PDSCQWP---EKMRFLNLSSTGIRV-----------VKT 427

Query: 444 NGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNF 503
              + L  + + +      +  +F+  L++L +            KL  +      + + 
Sbjct: 428 CIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISR---------NKLKTL-----PDASL 471

Query: 504 FPRLEYLTMWRGTNLKSVYPNP-QPFPKLKKIQA----FHC 539
           FP L  + +     LKSV          L+KI      + C
Sbjct: 472 FPVLLVMKI-SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 30/153 (19%)

Query: 209 KRISLTANGIGSLSEIP----TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-- 262
           + + L+ N + S+ +      T   L +L +  N    + D   Q    +R L+L     
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPEKMRFLNLSSTGI 422

Query: 263 --FPPSTLPS---------GIS----GLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
                    +          +      L  L  L +S   +  LP        L  + + 
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL-FPVLLVMKIS 481

Query: 308 YAFHLSIIPHQLISCFSKLEVLRL------CGC 334
               L  +P  +    + L+ + L      C C
Sbjct: 482 RN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.2 bits (214), Expect = 6e-18
 Identities = 65/377 (17%), Positives = 120/377 (31%), Gaps = 82/377 (21%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
             + LT N I S S         L  L+    ++  +       L TL+ L++  NF  S
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 267 -TLPSGISGLVSLHHLDLSSTDITGLPQE---------------------LKALE----- 299
             LP+  S L +L H+DLS   I  +                        +  ++     
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 300 --KLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMK 357
             KL  L L   F+ S I    +   + L V RL                L      +M+
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE------RNLEIFEPSIME 256

Query: 358 ELLGLKHLNV-LSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH----LA 412
            L  +      L+++   S  + KF     + +++ +               +     + 
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA------------GVSIKYLEDVP 304

Query: 413 YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLK 472
                Q L +  C L++                   L ++ L   +G      V + +L 
Sbjct: 305 KHFKWQSLSIIRCQLKQ-----------FPTLDLPFLKSLTLTMNKGSISFKKVALPSLS 353

Query: 473 QLNMQG----------FTMEEIISVEKLSDIS----EVIGSEHNFFPRLEYLTMWRGTNL 518
            L++            ++     S+  L D+S     ++ +       L++L   + + L
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHL-DLSFNGAIIMSANFMGLEELQHLDF-QHSTL 411

Query: 519 KSVYPNPQPFPKLKKIQ 535
           K V      F  L+K+ 
Sbjct: 412 KRV-TEFSAFLSLEKLL 427

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.5 bits (207), Expect = 4e-17
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 209 KRISLTANGIGSLSEIPT---CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
           + +    + +  ++E        +L+ L +     +   DG F  L++L  L + GN   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 266 STLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCF 323
               S + +   +L  LDLS   +  +       L +L+ LN+ +  +L  +     +  
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQL 520

Query: 324 SKLEVLRL 331
             L  L  
Sbjct: 521 YSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 7e-14
 Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 13/136 (9%)

Query: 209 KRISLTANGIGSLSEIP----TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-- 262
             + L+ N +               L  L L  N    +    F  L  L+ L  + +  
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTL 411

Query: 263 --FPPSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQL 319
                    S    L  L +LD+S T+           L  L  L +            +
Sbjct: 412 KRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 320 ISCFSKLEVLRLCGCG 335
            +  + L  L L  C 
Sbjct: 469 FANTTNLTFLDLSKCQ 484

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 22/158 (13%)

Query: 195 KLTEAPKVEEWEGAKRI---SLTANGIGSL--SEIPTCPRLVTLLLDGNRIEE-ITDGFF 248
            L    +   +   +++    ++                 L TL + GN  ++      F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 249 QSLSTLRVLSLRGN----FPPSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRY 303
            + + L  L L                   L  L  L++S  ++  L       L  L  
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVF----DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 304 LNLDYAFHLSIIPHQLISCFSKLEVLRL------CGCG 335
           L+  +   +      L      L    L      C C 
Sbjct: 526 LDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACICE 562

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 48/311 (15%), Positives = 85/311 (27%), Gaps = 52/311 (16%)

Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288
            +    L            F  L+ +  +SL G      L            L +    +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDV-PKHFKWQSLSIIRCQL 319

Query: 289 TGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL 348
              P     L  L+ L L      SI           L  L L        +        
Sbjct: 320 KQFP--TLDLPFLKSLTLTM-NKGSISFK--KVALPSLSYLDLSRNA----LSFSGCCSY 370

Query: 349 CDGAEPLMKEL-LGLKHLNVLSWSFGSSLAVQK-FLKYPKLVSITQSVWVECGTYTRPPF 406
            D     ++ L L      ++S +F     +Q    ++  L  +               F
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-------------TEF 417

Query: 407 NVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLV 466
           +      +E L  L++   N          +   +F     +LNT+ +     KD T   
Sbjct: 418 SAFL--SLEKLLYLDISYTNT-------KIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSN 467

Query: 467 FVQNLKQLNMQGFTMEEIISVEKLSD--ISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN 524
              N   L          +    LS   + ++     +   RL+ L M    NL  +  +
Sbjct: 468 VFANTTNL--------TFLD---LSKCQLEQISWGVFDTLHRLQLLNM-SHNNLLFL--D 513

Query: 525 PQPFPKLKKIQ 535
              + +L  + 
Sbjct: 514 SSHYNQLYSLS 524

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 213 LTANGIGSLSEIPT---CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
              + +  +SE         L+ L +         +G F  LS+L VL + GN       
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 270 SGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLE 327
             I + L +L  LDLS   +  L      +L  L+ LN+ +  +   +      C + L+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQ 226

Query: 328 VLRL 331
           VL  
Sbjct: 227 VLDY 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-FPPSTLPSGI-SGL 275
            L+ +PT        L L+ N+++ +  G F  L+ L  LSL  N        S    G 
Sbjct: 18  GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGC 334
            SL +LDLS   +  +      LE+L +L+  ++    +    +      L  L +   
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 65/334 (19%), Positives = 101/334 (30%), Gaps = 60/334 (17%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K ++L  N +  LS+     C  L  L L  N I++I +  F     L  L L  N   S
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQE---LKALEKLRYLNLDYAFHLSIIPHQLISCF 323
           T       L +L  L LS+  I  L  E   + A   L+ L L     +           
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAI 194

Query: 324 SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLK 383
            +L  L L        +  K                L    +  LS            L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLC------------LELANTSIRNLS------------LS 230

Query: 384 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFR 443
             +L + + +            F  L      NL  L+L   NL              F 
Sbjct: 231 NSQLSTTSNTT-----------FLGLKWT---NLTMLDLSYNNL-------NVVGNDSFA 269

Query: 444 NGFRNLNTVVLRSCRGKDLTWLVFV--QNLKQLNMQGFTMEEIISVEKLSDISEVIGSEH 501
                L    L     + L         N++ LN++    ++ IS+  L  I +      
Sbjct: 270 W-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD---FSF 325

Query: 502 NFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQ 535
            +   LE+L M    ++  +      F  L  ++
Sbjct: 326 QWLKCLEHLNM-EDNDIPGI--KSNMFTGLINLK 356

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 49/327 (14%), Positives = 100/327 (30%), Gaps = 73/327 (22%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVS 277
            L+++P      +  L L  N++  +    F   S L  L +  N      P     L  
Sbjct: 15  KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74

Query: 278 LHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336
           L  L+L   +++ L  +       L  L+L     +  I +        L  L L   G 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 337 FGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWV 396
                G                 + L++L  L             L   K+ ++      
Sbjct: 134 SSTKLG---------------TQVQLENLQELL------------LSNNKIQALKSE--- 163

Query: 397 ECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRS 456
                     ++   +   +L++LEL S  +        E     F      L  + L +
Sbjct: 164 --------ELDIFANS---SLKKLELSSNQI-------KEFSPGCFHA-IGRLFGLFLNN 204

Query: 457 CR-----GKDLTWLVFVQNLKQLNMQGFTMEEIISVE------------KLSD--ISEVI 497
            +      + L   +   +++ L++    +    +               LS   ++ V 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 498 GSEHNFFPRLEYLTMWRGTNLKSVYPN 524
                + P+LEY  +    N++ ++ +
Sbjct: 265 NDSFAWLPQLEYFFL-EYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 209 KRISLTANGIGSL---SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF-- 263
           + + L  N IG      E      +  + L  N+  ++T   F  + +L+ L LR     
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 264 PPSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDY-------AFHLSII 315
              + PS    L +L  LDLS+ +I  +  + L+ LEKL  L+L +              
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 316 PHQLISCFSKLEVLRL 331
           P   +   S L +L L
Sbjct: 528 PIYFLKGLSHLHILNL 543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 9e-13
 Identities = 28/126 (22%), Positives = 40/126 (31%), Gaps = 6/126 (4%)

Query: 210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
             SL      +   +     L  L L  N+I +I    F  L  L VL L  N     L 
Sbjct: 364 FTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 270 SG-ISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQ--LISCFSK 325
                GL ++  + LS      L +     +  L+ L L     L  +            
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRN 481

Query: 326 LEVLRL 331
           L +L L
Sbjct: 482 LTILDL 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 55/313 (17%), Positives = 105/313 (33%), Gaps = 63/313 (20%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
                +    + +I D  FQ L  L  L++  N  P    +  +GL++L +L LS++  +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 290 GLPQELKALE-----KLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKE 344
                 +         L  LNL     +S I     S    LEVL L             
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDL------------G 413

Query: 345 GNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRP 404
            N +  G E   +E  GL+++  +            +L Y K + +T++           
Sbjct: 414 LNEI--GQELTGQEWRGLENIFEI------------YLSYNKYLQLTRNS---------- 449

Query: 405 PFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTW 464
                  A + +LQ L L    L+ +     +     F+   RNL  + L +    ++  
Sbjct: 450 ------FALVPSLQRLMLRRVALKNV-----DSSPSPFQP-LRNLTILDLSNNNIANIND 497

Query: 465 LVFV--QNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY 522
            +    + L+ L++Q   +  +            +         L  L +        + 
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG----LSHLHILNL-ESNGFDEI- 551

Query: 523 PNPQPFPKLKKIQ 535
              + F  L +++
Sbjct: 552 -PVEVFKDLFELK 563

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FP 264
            R+   AN  G +  +     L  L L+ N  +EI    F+ L  L+++ L  N     P
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 265 PSTLPSGISGLVSLHHLDLSSTDITGLPQEL--KALEKLRYLNLDY 308
            S      +  VSL  L+L    IT + +++   A   L  L++ +
Sbjct: 577 ASVF----NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             + L  N +   + +   P LV + L  N +E+I    F  +  L  L +  N     L
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL 287

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
                 + +L  LDLS   +  + +     ++L  L LD+   +  +    +S    L+ 
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKN 343

Query: 329 LRLCG 333
           L L  
Sbjct: 344 LTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K ++   + +  L    + +  ++  L L+  +IEEI    F    T++ L +  N    
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IR 106

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFS 324
            LP  +   +  L  L L   D++ LP+ +     KL  L++    +L  I        +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATT 165

Query: 325 KLEVLRL 331
            L+ L+L
Sbjct: 166 SLQNLQL 172

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           + ++L    I  +          +  L +  N I  +    FQ++  L VL L  N   S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLS 130

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           +LP GI      L  L +S+ ++  +  +  +A   L+ L L     L+ +    +S   
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIP 186

Query: 325 KLEVLRL 331
            L    +
Sbjct: 187 SLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 54/329 (16%), Positives = 105/329 (31%), Gaps = 64/329 (19%)

Query: 212 SLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG 271
             T +      +I T      +    + + ++      S   + +L+L        + + 
Sbjct: 30  MQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY 87

Query: 272 I-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVL 329
             +   ++  L +    I  LP    + +  L  L L+    LS +P  +     KL  L
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 146

Query: 330 RLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVS 389
            +              N L    +   +    L++L  LS +  + + +      P L  
Sbjct: 147 SM------------SNNNLERIEDDTFQATTSLQNLQ-LSSNRLTHVDLSLI---PSLFH 190

Query: 390 ITQSVWVECGTYTRPPFNVLH-LAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN 448
              S            +N+L  LA    ++EL+    ++             +       
Sbjct: 191 ANVS------------YNLLSTLAIPIAVEELDASHNSINV-----------VRGPVNVE 227

Query: 449 LNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFF---P 505
           L  + L+     D  WL+    L ++++         S  +L  I        + F    
Sbjct: 228 LTILKLQHNNLTDTAWLLNYPGLVEVDL---------SYNELEKIMY------HPFVKMQ 272

Query: 506 RLEYLTMWRGTNLKSVYPNPQPFPKLKKI 534
           RLE L +     L ++    QP P LK +
Sbjct: 273 RLERLYI-SNNRLVALNLYGQPIPTLKVL 300

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 29/144 (20%)

Query: 209 KRISLTANGIGSLSEIPT-----CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN- 262
             + L  N    LS +P       P+L TL +  N +E I D  FQ+ ++L+ L L  N 
Sbjct: 120 TVLVLERN---DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 263 ---FPPSTLPS------------GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
                 S +PS             ++  +++  LD S   I  +        +L  L L 
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQ 234

Query: 308 YAFHLSIIPHQLISCFSKLEVLRL 331
              H ++     +  +  L  + L
Sbjct: 235 ---HNNLTDTAWLLNYPGLVEVDL 255

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLST------------- 253
             +S++ N +  + +        L  L L  NR+  +      SL               
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203

Query: 254 ---LRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF 310
              +  L    N   + +   +   V L  L L   ++T     L     L  ++L Y  
Sbjct: 204 PIAVEELDASHN-SINVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN- 258

Query: 311 HLSIIPHQLISCFSKLEVLRL 331
            L  I +       +LE L +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYI 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 37/312 (11%), Positives = 84/312 (26%), Gaps = 83/312 (26%)

Query: 230 LVTLLLDGNRIEEITDGFFQ-----SLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLDL 283
               +     I+  T   +      +L+  ++++ + +     LP+ +      +  L+L
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNL 76

Query: 284 SSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKG 342
           +   I  +          ++ L + +   +  +P  +      L VL L           
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL----------- 124

Query: 343 KEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYT 402
            E N L      +      L  L+               +    L  I            
Sbjct: 125 -ERNDLSSLPRGIFHNTPKLTTLS---------------MSNNNLERIEDDT-------- 160

Query: 403 RPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDL 462
                        +LQ L+L S  L  + +           +   +L    +       L
Sbjct: 161 --------FQATTSLQNLQLSSNRLTHVDL-----------SLIPSLFHANVSYNL---L 198

Query: 463 TWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY 522
           + L     +++L+              ++ +             L  L + +  NL    
Sbjct: 199 STLAIPIAVEELDASH---------NSINVVRG------PVNVELTILKL-QHNNLTDT- 241

Query: 523 PNPQPFPKLKKI 534
                +P L ++
Sbjct: 242 AWLLNYPGLVEV 253

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 207 GAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP 264
            ++RI L  N I  +       C  L  L L  N +  I    F  L+ L  L L  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 265 PSTLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISC 322
             ++      GL  LH L L    +  L     + L  L+YL L     L  +P      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRD 151

Query: 323 FSKLEVLRL 331
              L  L L
Sbjct: 152 LGNLTHLFL 160

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
             + L   G+  L          L  L L  N ++ + D  F+ L  L  L L GN   S
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RIS 166

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           ++P     GL SL  L L    +  +     + L +L  L L    +LS +P + ++   
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLR 225

Query: 325 KLEVLRL------CGC 334
            L+ LRL      C C
Sbjct: 226 ALQYLRLNDNPWVCDC 241

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
            L  +P         + L GNRI  +    F++   L +L L  N   + + +   +GL 
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLA 80

Query: 277 SLHHLDLSS-TDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
            L  LDLS    +  +       L +L  L+LD    L  +   L    + L+ L L
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYL 136

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.1 bits (206), Expect = 5e-17
 Identities = 56/234 (23%), Positives = 86/234 (36%), Gaps = 37/234 (15%)

Query: 209 KRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267
           + + LTA  +  L S +     L  L+L  N+ E +      +  +L  LS++GN     
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 268 LPSG-ISGLVSLHHLDLSSTDITGLP---QELKALEKLRYLNLDYAFHLSIIPHQLISCF 323
           L +G +  L +L  LDLS  DI        +L+ L  L+ LNL Y      +  +     
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKEC 399

Query: 324 SKLEVLRLCGCGRFGVIKGKEGNVLCD-GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFL 382
            +LE+L L                L    A+   + L  LK LN LS S     + Q F 
Sbjct: 400 PQLELLDL------------AFTRLKVKDAQSPFQNLHLLKVLN-LSHSLLDISSEQLFD 446

Query: 383 KYPKLV-------SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEE 429
             P L           +    +  +          L  +  L+ L L  C+L  
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNS----------LQTLGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 55/339 (16%), Positives = 109/339 (32%), Gaps = 49/339 (14%)

Query: 209 KRISLTANGIGSLSEIP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
             + LTAN +  ++E        L  L      I  I      +  TL  L L  N   S
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 267 TLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAF-HLSIIPHQLISCFS 324
                      L  LD  +  I  L  +++ +L++   L+L+     ++ I        +
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SA 202

Query: 325 KLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFG--SSLAVQKF- 381
             + L   G     VI   +G          +     +   ++    F     ++V+   
Sbjct: 203 VFQSLNFGGTQNLLVI--FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 382 LKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL 441
           L+     +I+ +                       LQEL+L + +L E+          L
Sbjct: 261 LQKHYFFNISSNT----------------FHCFSGLQELDLTATHLSELP-------SGL 297

Query: 442 FRNGFRNLNTVVLRSCRGKDLTWLVFVQ--NLKQLNMQGFTMEEIISVEKLSDISEVIGS 499
              G   L  +VL + + ++L  +      +L  L+++G T    +    L +       
Sbjct: 298 V--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN------- 348

Query: 500 EHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFH 538
                  L  L +    ++++          L  +Q+ +
Sbjct: 349 ----LENLRELDL-SHDDIETSDCCNLQLRNLSHLQSLN 382

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 5e-15
 Identities = 53/326 (16%), Positives = 97/326 (29%), Gaps = 55/326 (16%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVS 277
            L+EIP         L    N +  I +  F  L  L  L L                  
Sbjct: 23  GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82

Query: 278 LHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336
           L  L L++  +  + +  L   + L++L       +S I    +     LE L L     
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYL----- 136

Query: 337 FGVIKGKEGNVLCDGAEPLMKELLGLKHL----NVLSWSFGSSLAVQKFLKYPKL-VSIT 391
                    N +     P       LK L    N + +     ++  +      L ++  
Sbjct: 137 -------GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 392 QSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNT 451
               +E G +    F  L+    +NL  +                  K L  +  ++L  
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVI-----------------FKGLKNSTIQSLWL 232

Query: 452 VVLRSCRGKDLTWLVFVQ----NLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRL 507
                   +D++  VF      +++ +N+Q                  +  +  + F  L
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQK------------HYFFNISSNTFHCFSGL 280

Query: 508 EYLTMWRGTNLKSVYPNPQPFPKLKK 533
           + L +   T+L  +         LKK
Sbjct: 281 QELDL-TATHLSELPSGLVGLSTLKK 305

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN---FPPSTLPSGI 272
               + S       L  L L  + ++  ++  F  L  L+ L+L+GN          + +
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 273 SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
             L  L  L LS  D++ + Q    +L+ + +++L +   L+    +     S L+ + L
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEA---LSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 22/143 (15%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITD---GFFQSLSTLRVLSLRGN- 262
           K ++L+ + +   SE      P L  L L GN   +         Q+L  L +L L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 263 ---FPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF-HLSIIPHQ 318
                        + L  ++H+DLS   +T    E  AL  L+ + L+ A  H+SII   
Sbjct: 488 LSSIDQHAF----TSLKMMNHVDLSHNRLTSSSIE--ALSHLKGIYLNLASNHISIILPS 541

Query: 319 LISCFSKLEVLRL------CGCG 335
           L+   S+   + L      C C 
Sbjct: 542 LLPILSQQRTINLRQNPLDCTCS 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 83.4 bits (205), Expect = 6e-17
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 35/180 (19%)

Query: 10  SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGD- 68
           +L  D+   L  + ++    D    +P             P  L I+  +++      D 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQD----LPREV------LTTNPRRLSIIAESIRDGLATWDN 346

Query: 69  WKR-AINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKREL 127
           WK    +K+ T               ++ S + L   E R       ++P    IP   L
Sbjct: 347 WKHVNCDKLTTI--------------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 128 IDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDH-VKMHDMIREMSLWIACTVDKEEQ 186
              W          D    ++ L +  L+E++  +  + +  +  E+       ++ E  
Sbjct: 393 SLIWFDV----IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK----VKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 9e-08
 Identities = 68/436 (15%), Positives = 132/436 (30%), Gaps = 139/436 (31%)

Query: 119 DYEIPK-----RELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREM 173
           D+E  +     ++++  +  + FV +FD  C  + D+ ++ L +EE D  +   D +   
Sbjct: 8   DFETGEHQYQYKDILSVFE-DAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 174 SLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTL 233
                  + K+E+  +V+  V+        ++       L +     +      P ++T 
Sbjct: 65  LRLFWTLLSKQEE--MVQKFVEEVLRINY-KF-------LMS----PIKTEQRQPSMMTR 110

Query: 234 LLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ 293
           +    R     D   Q  +   V  L+                   +L L          
Sbjct: 111 MYIEQRDRLYNDN--QVFAKYNVSRLQ------------------PYLKLR--------- 141

Query: 294 ELKALEKLRYLNLDYAFHLSIIPHQLISC-----FSKLEVLRLCGCGRFGVIKGKEGNVL 348
             +AL +LR             P + +         K   + L  C  + V    +  + 
Sbjct: 142 --QALLELR-------------PAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIF 185

Query: 349 ------CDGAEPLMKELLGLKHLNVLSWSFGSS-------------LAVQKFLK---YPK 386
                 C+  E +++ L  L +    +W+  S                +++ LK   Y  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 387 LVSITQSVW---------VECGTY--TRPP--FNVLHLAYMENLQELELESCNLEEMKID 433
            + +  +V          + C     TR     + L  A   ++  L+  S  L      
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTP---- 300

Query: 434 STEEVKKLFRNGFRNLNTVVLRS--CRGKDL--------------TWLVFVQNLKQLNMQ 477
             +EVK L    + +     L                        TW     N K +N  
Sbjct: 301 --DEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW----DNWKHVNCD 353

Query: 478 GFTMEEII--SVEKLS 491
              +  II  S+  L 
Sbjct: 354 --KLTTIIESSLNVLE 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 62/388 (15%), Positives = 120/388 (30%), Gaps = 105/388 (27%)

Query: 7   EVYSLAHDKAW---ELFQEM-VERSTLDSHTSIPELAETLARE----------CGGLPLA 52
            +Y    D+ +   ++F +  V R  L  +  + +    L              G   +A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 53  LKIVGRAMKSQRKVGD---W--------KRAI----NKMRTSASKFSGMKEEVFSRLKFS 97
           L +   + K Q K+     W           +     K+          + +  S +K  
Sbjct: 168 LDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 98  YDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYD-FDDGC---------DFI 147
             S+   ELR  LL    Y     +    L++   ++   ++ F+  C            
Sbjct: 227 IHSIQ-AELRR-LLKSKPYENCLLV----LLNVQNAK--AWNAFNLSCKILLTTRFKQVT 278

Query: 148 DDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEG 207
           D L            H+ +      +      T D+ +   L     +  + P   E   
Sbjct: 279 DFL------SAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLP--RE--- 321

Query: 208 AKRIS-LTANGIG-SLSEIPTCPRLVTLL-LDGNRIEEITDGFFQSLST------LRVLS 258
               +    + I  S+ +            ++ +++  I +     L           LS
Sbjct: 322 VLTTNPRRLSIIAESIRDGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 259 LRGNFPPST-LPSGISGLVSLHHLDLSSTDITGLPQELK---ALEK----------LRYL 304
           +   FPPS  +P+ +  L  +   D+  +D+  +  +L     +EK            YL
Sbjct: 380 V---FPPSAHIPTIL--LSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 305 NL------DYAFHLSIIPH-QLISCFSK 325
            L      +YA H SI+ H  +   F  
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDS 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 7e-17
 Identities = 43/277 (15%), Positives = 76/277 (27%), Gaps = 46/277 (16%)

Query: 220 SLSEIPTC-PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVS 277
           +L+++P        LLL  N I  +T   F  L  L++L L   + P T+       L +
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 278 LHHLDLSSTDITGLPQE-LKALEKLRYLNLDY-AFHLSIIPHQLISCFSKLEVLRLCGCG 335
           L  LDL S+ I  L  +  + L  L  L L +     +++          L  L L    
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN- 133

Query: 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVW 395
           +   +              L      L  L  +                 ++  + +   
Sbjct: 134 QIRSL-------------YLHPSFGKLNSLKSID------------FSSNQIFLVCEHE- 167

Query: 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455
                        L     + L    L + +L         +    FRN    L  + + 
Sbjct: 168 ----------LEPLQ---GKTLSFFSLAANSLYSRVSVDWGKCMNPFRN--MVLEILDVS 212

Query: 456 SCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSD 492
                      F   + +       +   I       
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 23/280 (8%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           + + L+   + SL+     T   L  L L  N+I +I D  F  L  L+VL+L  N    
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LG 327

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDY----AFHLSIIPHQLI 320
            L S    GL  + ++DL    I  +  +  K LEKL+ L+L        H       + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 321 SCFSKLEVL-RLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQ 379
              +KL  L ++        +       L       +  +  L+ L +    F S    Q
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILY--FLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 380 KFLKYPKLVSIT-QSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV 438
              + P L  +      ++    T   ++V     + +LQ L L    L  +        
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDV--FEGLSHLQVLYLNHNYLNSLP------- 496

Query: 439 KKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG 478
             +F +    L  + L S R   L+      NL+ L++  
Sbjct: 497 PGVFSH-LTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 57/363 (15%), Positives = 117/363 (32%), Gaps = 73/363 (20%)

Query: 209 KRISLTANGIGSLSEIPT---CPRLVTLLLDGNRIEEITDGFFQSLS--TLRVLSLRGNF 263
            R+ L+ N I SL   P+      L ++    N+I  + +   + L   TL   SL  N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 264 PPSTLPSGISGL------VSLHHLDLSSTDITGLP-------------QELKALEKLRYL 304
             S +             + L  LD+S    T                  L     +   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 305 NLDYAFHLSIIPHQLIS--CFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGL 362
              +  ++        +    S +  L L     F +               + + L  L
Sbjct: 246 GFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------------VFETLKDL 292

Query: 363 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH------LAYMEN 416
           K LN L+++  + +A + F     L  +  S            +N+L          +  
Sbjct: 293 KVLN-LAYNKINKIADEAFYGLDNLQVLNLS------------YNLLGELYSSNFYGLPK 339

Query: 417 LQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNM 476
           +  ++L+  ++  ++  +              L T+ LR      LT + F+ ++  + +
Sbjct: 340 VAYIDLQKNHIAIIQDQTF--------KFLEKLQTLDLRDNA---LTTIHFIPSIPDIFL 388

Query: 477 QGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRG-TNLKSVYPNPQPFPKLKKIQ 535
            G    +++++ K++  + +I    N    L+ L       +L+ +  N   F      Q
Sbjct: 389 SG---NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 536 AFH 538
              
Sbjct: 446 TPS 448

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.1 bits (203), Expect = 9e-17
 Identities = 72/344 (20%), Positives = 119/344 (34%), Gaps = 57/344 (16%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           + + L  N I +L++    + P L  L L+ N +  +  G F +L  LR L LR N    
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLK 93

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFS 324
            +P G+ +GL +L  LD+S   I  L   + + L  L+ L +     L  I H+  S  +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLN 152

Query: 325 KLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKY 384
            LE L L            E   L       +  L GL  L  L     +++    F + 
Sbjct: 153 SLEQLTL------------EKCNLTSIPTEALSHLHGLIVLR-LRHLNINAIRDYSFKRL 199

Query: 385 PKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN 444
            +L  +  S W    T T      L      NL  L +  CNL  +            R+
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGL------NLTSLSITHCNLTAVP-------YLAVRH 246

Query: 445 GFRNLNTVVLRSCRGKDLTWLVFV--QNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHN 502
               L  + L       +   +      L+++ + G              ++ V    + 
Sbjct: 247 -LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG------------GQLAVV--EPYA 291

Query: 503 F--FPRLEYLTMWRGTNLKSVYPNP-QPFPKLKKIQ----AFHC 539
           F     L  L +  G  L ++  +       L+ +        C
Sbjct: 292 FRGLNYLRVLNV-SGNQLTTLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 50/261 (19%), Positives = 80/261 (30%), Gaps = 58/261 (22%)

Query: 220 SLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
               +P         L L  NRI+ +    F S   L  L L  N   S +  G  + L 
Sbjct: 22  RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLF 80

Query: 277 SLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335
           +L  L L S  +  +P      L  L  L++     + I+   +      L+ L +    
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEV---- 135

Query: 336 RFGVIKGKEGN---VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQ 392
                     N    +   A        GL  L  L+            L+   L SI  
Sbjct: 136 --------GDNDLVYISHRA------FSGLNSLEQLT------------LEKCNLTSIPT 169

Query: 393 SVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS---TEEVKKLFRNGFRNL 449
                             L+++  L  L L   N+  ++  S      +K L  + +  L
Sbjct: 170 EA----------------LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 450 NTVVLRSCRGKDLTWLVFVQN 470
           +T+      G +LT L     
Sbjct: 214 DTMTPNCLYGLNLTSLSITHC 234

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 50/279 (17%), Positives = 85/279 (30%), Gaps = 60/279 (21%)

Query: 206 EGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263
              + ++L  N I  +          L  L L  N I +I  G F  L++L  L L  N+
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 264 PPSTLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLIS 321
             + +PSG    L  L  L L +  I  +P      +  L  L+L     L  I      
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 322 CFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKF 381
               L+ L L                + D     M  L  L  L  L             
Sbjct: 194 GLFNLKYLNL------------GMCNIKD-----MPNLTPLVGLEEL------------E 224

Query: 382 LKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL 441
           +       I                       + +L++L + +  +  ++       +  
Sbjct: 225 MSGNHFPEIRPGS----------------FHGLSSLKKLWVMNSQVSLIE-------RNA 261

Query: 442 FRNGFRNLNTVVLRSCRGKDLTWLVF--VQNLKQLNMQG 478
           F  G  +L  + L       L   +F  ++ L +L++  
Sbjct: 262 FD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
           K++ +  + +  +          LV L L  N +  +    F  L  L  L L  N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 1e-16
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             + L  N +   + +   P LV + L  N +E+I    F  +  L  L +  N     L
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL 293

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
                 + +L  LDLS   +  + +     ++L  L LD+   +  +    +S    L+ 
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKN 349

Query: 329 LRLCG 333
           L L  
Sbjct: 350 LTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 54/340 (15%), Positives = 110/340 (32%), Gaps = 60/340 (17%)

Query: 211 ISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS 270
           I +    +    E  T      +    + + ++      S   + +L+L        + +
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDT 92

Query: 271 GI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              +   ++  L +    I  LP    + +  L  L L+    LS +P  +     KL  
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTT 151

Query: 329 LRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV 388
           L +              N L    +   +    L++L  LS +  + + +      P L 
Sbjct: 152 LSM------------SNNNLERIEDDTFQATTSLQNLQ-LSSNRLTHVDLSLI---PSLF 195

Query: 389 SITQSVWVECGTYTRPPFNVLH-LAYMENLQELELESCNLEEMKIDSTEEVKKLF--RN- 444
               S            +N+L  LA    ++EL+    ++  ++     E+  L    N 
Sbjct: 196 HANVS------------YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 243

Query: 445 --------GFRNLNTVVLRSCRGKDLTWLVFV--QNLKQLNMQGFTMEEIISVEKLSDIS 494
                    +  L  V L     + + +  FV  Q L++L +            +L  ++
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN---------NRLVALN 294

Query: 495 EVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKI 534
                     P L+ L +    +L  V  N   F +L+ +
Sbjct: 295 LYGQP----IPTLKVLDL-SHNHLLHVERNQPQFDRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.1 bits (174), Expect = 4e-13
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           + ++L    I  +          +  L +  N I  +    FQ++  L VL L  N   S
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLS 136

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           +LP GI      L  L +S+ ++  +  +  +A   L+ L L     L+ +    +S   
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIP 192

Query: 325 KLEVLRL 331
            L    +
Sbjct: 193 SLFHANV 199

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN---- 262
             + L  N + SL        P+L TL +  N +E I D  FQ+ ++L+ L L  N    
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 263 FPPSTLPS------------GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF 310
              S +PS             ++  +++  LD S   I  +        +L  L L    
Sbjct: 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQ--- 240

Query: 311 HLSIIPHQLISCFSKLEVLRL 331
           H ++     +  +  L  + L
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDL 261

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 25/143 (17%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           +++ +  N I  L        P L  L+L+ N +  +  G F +   L  LS+  N    
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLE 160

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLP-----------------QELKALEKLRYLNLDY 308
            +         SL +L LSS  +T +                    L     +  L+  +
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220

Query: 309 AFHLSIIPHQLISCFSKLEVLRL 331
              ++++   +     +L +L+L
Sbjct: 221 N-SINVVRGPV---NVELTILKL 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLST------------- 253
             +S++ N +  + +        L  L L  NR+  +      SL               
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209

Query: 254 ---LRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF 310
              +  L    N   + +   +   V L  L L   ++T     L     L  ++L Y  
Sbjct: 210 PIAVEELDASHN-SINVVRGPV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYN- 264

Query: 311 HLSIIPHQLISCFSKLEVLRL 331
            L  I +       +LE L +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYI 285

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 41/331 (12%), Positives = 88/331 (26%), Gaps = 93/331 (28%)

Query: 220 SLSEIPTCPRL--------VTLLLDGNRIEEITDGFFQ-----SLSTLRVLSLRGNFPPS 266
             +  P  P             +     I+  T   +      +L+  ++++ + +    
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-R 64

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
            LP+ +      +  L+L+   I  +          ++ L + +   +  +P  +     
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVP 123

Query: 325 KLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL-GLKHLNVLSWSFGSSLAVQKFLK 383
            L VL L            E N L      L + +      L  LS            + 
Sbjct: 124 LLTVLVL------------ERNDLSS----LPRGIFHNTPKLTTLS------------MS 155

Query: 384 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFR 443
              L  I                         +LQ L+L S  L             +  
Sbjct: 156 NNNLERIEDDT----------------FQATTSLQNLQLSSNRLTH-----------VDL 188

Query: 444 NGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNF 503
           +   +L    +       L+ L     +++L+              ++ +          
Sbjct: 189 SLIPSLFHANVSYNL---LSTLAIPIAVEELDASH---------NSINVVRG------PV 230

Query: 504 FPRLEYLTMWRGTNLKSVYPNPQPFPKLKKI 534
              L  L + +  NL         +P L ++
Sbjct: 231 NVELTILKL-QHNNLTDT-AWLLNYPGLVEV 259

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FP 264
             +    N +  L    T  +L  L LD N+IEEI + F      +  L    N     P
Sbjct: 576 GLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 265 PSTLPSGISGLVSLHHLDLSSTDITGLPQEL------KALEKLRYLNLDYAFHLSIIPHQ 318
                     +  +  +D S   I    + +              + L Y   +   P +
Sbjct: 636 NIF---NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTE 691

Query: 319 LISCFSKLEVLRL 331
           L +  S +  + L
Sbjct: 692 LFATGSPISTIIL 704

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 45/290 (15%), Positives = 86/290 (29%), Gaps = 65/290 (22%)

Query: 216 NGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGF---------FQSLSTLRVLSLRGN--- 262
             +  L   +   P L +L +  NR                   +   +++  +  N   
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 263 -FPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLIS 321
            FP S   + +  +V L  LD     +  L        KL  L LDY   +  IP    +
Sbjct: 562 EFPAS---ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCA 616

Query: 322 CFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKF 381
              ++E L      +   I             P +     +  +  +             
Sbjct: 617 FTDQVEGLGFSHN-KLKYI-------------PNIFNAKSVYVMGSVD------------ 650

Query: 382 LKYPKLVSITQSVWVECGTYTRPPFNVLHLAY-------------MENLQELELESCNLE 428
             Y K+ S  +++      Y     + + L+Y                +  + L +  + 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 429 EMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWL---VFVQNLKQLN 475
            +  +S +     ++N    L T+ LR  +   LT L        L  L+
Sbjct: 711 SIPENSLKPKDGNYKN-TYLLTTIDLRFNK---LTSLSDDFRATTLPYLS 756

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 19/140 (13%)

Query: 209 KRISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEI-------TDGFFQSLSTLRVLSL 259
             ++L+ N I         T   + T++L  N +  I        DG +++   L  + L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 260 RGNFPPSTLPSGI--SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLS---- 313
           R N   ++L      + L  L ++D+S    +  P +     +L+   + +         
Sbjct: 736 RFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 314 --IIPHQLISCFSKLEVLRL 331
               P  + +C   L  L++
Sbjct: 795 LRQWPTGITTC-PSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 21/143 (14%)

Query: 209 KRISLTANGIGSLSE---IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
             I L  N + SLS+     T P L  + +  N             S L+   +R     
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDA 789

Query: 266 S------TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQL 319
                    P+GI+   SL  L + S DI  + ++L    +L  L++        I    
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADN-PNISIDVTS 846

Query: 320 ISCFSKLEVLRL--------CGC 334
           +  + +  +  L         GC
Sbjct: 847 VCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 15/134 (11%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           + I    +     +             D  +  E  +  + +L  L  + L      + L
Sbjct: 451 QIIYFANS---PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 269 PSGISGLVSLHHLDLSS----------TDITGLPQELKALEKLRYLNLDYAFHLSIIPH- 317
           P  +  L  L  L+++            D T L  +     K++   + Y  +L   P  
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566

Query: 318 QLISCFSKLEVLRL 331
             +    KL +L  
Sbjct: 567 ASLQKMVKLGLLDC 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 17/133 (12%)

Query: 210 RISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           +I    N I  +   I    +L  +    +             +         N   S  
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-- 486

Query: 269 PSGISGLVSLHHLDLSSTDITG-LPQELKALEKLRYLNLDY---------AFHLSIIPHQ 318
               S L  L  ++L +      LP  L  L +L+ LN+               + +   
Sbjct: 487 ---WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-D 542

Query: 319 LISCFSKLEVLRL 331
                 K+++  +
Sbjct: 543 DEDTGPKIQIFYM 555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 54/367 (14%), Positives = 102/367 (27%), Gaps = 53/367 (14%)

Query: 193 GVKLTEAPKVEEWEGAKRISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
           GV L    +V        +SL   G        I     L  L    +        F   
Sbjct: 316 GVDLDNNGRVTG------LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 251 LSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL--- 306
             T  +   R +          +     L+  DL    I   P E+K ++K   ++L   
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDT 428

Query: 307 ---DYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL----CDGAEPLMKEL 359
              +    ++ I   +    +KL+++              +            E      
Sbjct: 429 QIGNLTNRITFISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 360 LGLKHLNVLSWSFGSSLAV--QKFLKYPKLVSIT------QSVWVECGTYTRPPFNVLHL 411
             LK L  +      ++          P+L S+        S       +TR   +    
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNL 471
                +Q   +   NLEE    ++  ++K+       L  +     + + L        L
Sbjct: 548 ---PKIQIFYMGYNNLEE--FPASASLQKM-----VKLGLLDCVHNKVRHLEAFGTNVKL 597

Query: 472 KQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKL 531
             L +            ++ +I E       F  ++E L       LK + PN      +
Sbjct: 598 TDLKLDY---------NQIEEIPEDFC---AFTDQVEGLGF-SHNKLKYI-PNIFNAKSV 643

Query: 532 KKIQAFH 538
             + +  
Sbjct: 644 YVMGSVD 650

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 15/202 (7%)

Query: 236 DGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL 295
           + +   +       +   +  LSL G      +P  I  L  L  L   +   T   +  
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 296 KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPL 355
              E    ++ +    + +   ++       + L L    +  + +  E   +   +   
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMF--LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424

Query: 356 MKELLGLKHLNVLSW---SFGS-------SLAVQKFLKYPKLVSITQSVWVECGTYTRPP 405
           +K+       N +++   +            A   F      V    +       Y    
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484

Query: 406 FNVLHLAYMENLQELELESCNL 427
              L  + +++L ++EL +C  
Sbjct: 485 ---LSWSNLKDLTDVELYNCPN 503

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 221 LSEIP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVS 277
           ++ IP    P L  L LDGN+I ++     + L+ L  L L  N   S + +G  +    
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPH 241

Query: 278 LHHLDLSSTDITGLPQELKALEKLRYLNLDY---------AFHLSIIPHQLISCFSKLEV 328
           L  L L++  +  +P  L   + ++ + L            F     P    +  +    
Sbjct: 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC----PPGYNTKKASYSG 297

Query: 329 LRL 331
           + L
Sbjct: 298 VSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 30/152 (19%)

Query: 206 EGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN- 262
                + L  N I  + +        L TL+L  N+I +I+ G F  L  L  L L  N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 263 ---FPP----------------STLPSGI-SGLVSLHHLDLSSTDIT--GLPQE-LKALE 299
               P                 + +   + +GL  +  ++L +  +   G+     + ++
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 300 KLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           KL Y+ +    +++ IP  L      L  L L
Sbjct: 172 KLSYIRIADT-NITTIPQGL---PPSLTELHL 199

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN---- 262
            ++ L+ N I ++    +   P L  L L+ N++ ++  G       ++V+ L  N    
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISA 277

Query: 263 FPPSTL--PSGISGLVSLHHLDLSSTDI--TGLPQEL-KALEKLRYLNLDY 308
              +    P   +   S   + L S  +    +     + +     + L  
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 7e-16
 Identities = 53/377 (14%), Positives = 104/377 (27%), Gaps = 79/377 (20%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVS 277
           +  +IP         L L  N +  +    F S   L+VL L      +        L  
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 278 LHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336
           L  L L+   I  L       L  L+ L      +L+ + +  I     L+ L +     
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNV----- 131

Query: 337 FGVIKGKEGNVLCDGAEPLMKELLGLKHL-------NVLSWSFGSSLAVQKFLKYPKLV- 388
                    N++     P  +    L +L       N +   + + L V   +    L  
Sbjct: 132 -------AHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 389 --SITQSVWVECGTYTRPPFNVLHLAY--------------------------------- 413
             S+    +++ G +     + L L                                   
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 414 --------MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWL 465
                   +E L  L +E   L  +     +++  LF     N+++  L S   + +   
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDY-YLDDIIDLFNC-LTNVSSFSLVSVTIERVKDF 300

Query: 466 VFVQNLKQLNMQGFTMEEIISVE-------KLSDISEVIGSEHNFFPRLEYLTMWRGTNL 518
            +    + L +      +  +++         +             P LE+L +     L
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGL 359

Query: 519 KSVYPNPQPFPKLKKIQ 535
                  Q       ++
Sbjct: 360 SFKGCCSQSDFGTTSLK 376

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 7e-15
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-FPPSTLPSGISG 274
             +   S   +   L+ L +         +G F  LS+L VL + GN F  + LP   + 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 275 LVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           L +L  LDLS   +  L P    +L  L+ LN+ +  +   +      C + L+VL  
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 21/144 (14%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS-- 266
              SL +  I  + +         L L   +  +      +SL  L   S +G    S  
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 267 -------------------TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
                                     G  SL +LDLS   +  +      LE+L +L+  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404

Query: 308 YAFHLSIIPHQLISCFSKLEVLRL 331
           ++    +    +      L  L +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 30/190 (15%), Positives = 49/190 (25%), Gaps = 31/190 (16%)

Query: 209 KRISLTANGIGSLSEIPT----CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-- 262
           + + L+ NG+               L  L L  N +  ++  F   L  L  L  + +  
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL 408

Query: 263 ---FPPSTLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQ 318
                 S        L +L +LD+S T            L  L  L +            
Sbjct: 409 KQMSEFSVF----LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 319 LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV----LSWSFGS 374
           + +    L  L L  C    +                   L  L+ LN+           
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPT------------AFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 375 SLAVQKFLKY 384
                  L+ 
Sbjct: 513 PYKCLNSLQV 522

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 64/337 (18%), Positives = 106/337 (31%), Gaps = 49/337 (14%)

Query: 209 KRISLTANGIGSL---SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
           K +++  N I S            L  L L  N+I+ I     + L  + +L+L      
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------ 180

Query: 266 STLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK 325
                          LDLS   +  +        +L  L L   F    +    I   + 
Sbjct: 181 --------------SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 326 LEVLRLCGCGRFGVIKGKEGNV-LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKY 384
           LEV RL           ++ +    +G   L  E   L +L+               +  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 385 PKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN 444
             LVS+T                V   +Y    Q LEL +C   +      + +K+L   
Sbjct: 287 FSLVSVTIE-------------RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

Query: 445 GFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDIS----EVIGSE 500
             +  N           L +L   +N   L+ +G   +       L  +      VI   
Sbjct: 334 SNKGGNAFSEVDL--PSLEFLDLSRN--GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 501 HNFF--PRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQ 535
            NF    +LE+L   + +NLK +      F  L+ + 
Sbjct: 390 SNFLGLEQLEHLDF-QHSNLKQM-SEFSVFLSLRNLI 424

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FPPSTLPSGISGLVSLHHLD 282
              L  L L   ++E+++   F SLS+L+VL++  N                L SL  LD
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY----KCLNSLQVLD 524

Query: 283 LSSTDITGL-PQELKALEK-LRYLNLDY 308
            S   I     QEL+     L +LNL  
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 211 ISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FP 264
           + L+   +  L  +   +   L  L +  N    +    ++ L++L+VL    N      
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 265 PSTLPSGISGLVSLHHLDLSS 285
              L    S   SL  L+L+ 
Sbjct: 535 KQELQHFPS---SLAFLNLTQ 552

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 221 LSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVS 277
           L+ IP      L  L LD N+I+ I        S L  L L  N     + +G  S L +
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPT 242

Query: 278 LHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPH------QLISCFSKLEVLRL 331
           L  L L +  ++ +P  L  L+ L+ + L    +++ +              +    + L
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 29/150 (19%)

Query: 207 GAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-- 262
               + L  N I  L +        L  L+L  N+I +I +  F  L  L+ L +  N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 263 --FPP----------------STLPSGI-SGLVSLHHLDLSSTDITGLPQELKALE--KL 301
              PP                  +P G+ SGL +++ +++    +     E  A +  KL
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 302 RYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
            YL +  A  L+ IP  L      L  L L
Sbjct: 175 NYLRISEA-KLTGIPKDL---PETLNELHL 200

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 221 LSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVS 277
           L EIP      LV L +  NRI ++  G F  L  +  + + GN    S    G    + 
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 278 LHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333
           L++L +S   +TG+P++L   E L  L+LD+   +  I  + +  +SKL  L L  
Sbjct: 174 LNYLRISEAKLTGIPKDL--PETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGH 226

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 220 SLSEIPT-CPRLVTLL-LDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
            L  +P       TLL L  N I E+    F+ L  L  L L  N   S +     S L 
Sbjct: 44  GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLR 102

Query: 277 SLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333
            L  L +S   +  +P  L     L  L +     +  +P  + S    +  + + G
Sbjct: 103 KLQKLYISKNHLVEIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 9/85 (10%)

Query: 209 KRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLST------LRVLSLRG 261
           + + L  N +  +   +P    L  + L  N I ++    F  +           +SL  
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 262 NF-PPSTLPSGI-SGLVSLHHLDLS 284
           N  P   +       +     +   
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFG 328

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             I+L    +  L+ I     +  L ++              LS L  L + G    S  
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDK 104

Query: 269 PSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLE 327
              +SGL SL  LD+S +        ++  L K+  ++L Y   ++ I    +    +L+
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELK 162

Query: 328 VLRLCGCG 335
            L +   G
Sbjct: 163 SLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 3/123 (2%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           K +++      + + I     L  L + G  +          L++L +L +  +    ++
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
            + I+ L  ++ +DLS          LK L +L+ LN+ +           I  F KL  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQ 185

Query: 329 LRL 331
           L  
Sbjct: 186 LYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 209 KRISLTANGIGS--LSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           +R+ +    + S  +  +     L  L +  +  ++       +L  +  + L  N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN-GAI 149

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY 308
           T    +  L  L  L++    +    + ++   KL  L    
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288
             +  LL  +    IT+     +++L  ++L      + L +GI    ++  L +++   
Sbjct: 24  AYLNGLLGQSSTANITEA---QMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHA 78

Query: 289 TGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGC 334
           T     +  L  L  L +     ++      +S  + L +L +   
Sbjct: 79  TNY-NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS 122

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 206 EGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263
              + ++L  N I  +          L  L L  N I  I  G F  L+ L  L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 264 PPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLIS 321
             +T+P+G    L  L  L L +  I  +P      +  LR L+L     LS I      
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 322 CFSKLEVLRLCGC 334
             S L  L L  C
Sbjct: 183 GLSNLRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 221 LSEIPT-----CPRLVTL-LLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
           +  IP+      P L  L L +  R+  I++G F+ LS LR L+L        +P+ ++ 
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTP 205

Query: 275 LVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           L+ L  LDLS   ++ +     + L  L+ L +  +  + +I          L  + L
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINL 262

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 6e-14
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 15/131 (11%)

Query: 209 KRISLTANGIGSLSEIPT-----CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263
           + + L+ N I     I          L TL L  NR+  I +G F  LS L+ L LR N 
Sbjct: 91  EILQLSRNHI---RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN- 146

Query: 264 PPSTLPSGI-SGLVSLHHLDLSST-DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLI 320
           P  ++PS   + + SL  LDL     ++ + +   + L  LRYLNL    +L  IP+  +
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--L 203

Query: 321 SCFSKLEVLRL 331
           +   KL+ L L
Sbjct: 204 TPLIKLDELDL 214

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FP 264
           + ++L    +  +  +    +L  L L GN +  I  G FQ L  L+ L +  +      
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 265 PSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLD 307
            +        L SL  ++L+  ++T LP +    L  L  ++L 
Sbjct: 248 RNAF----DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
           +++ +  + I  +          LV + L  N +  +    F  L  L  + L  N
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 55/336 (16%), Positives = 100/336 (29%), Gaps = 104/336 (30%)

Query: 226 TC-PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS 284
           +C  +   ++     + E+ DG     +  R+L+L  N       +    L  L  L LS
Sbjct: 40  SCSNQFSKVICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 285 STDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGK 343
              I  +       L  L  L L     L+ IP+                          
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGA------------------------ 131

Query: 344 EGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTR 403
                           + L  L  L            +L+   + SI    +        
Sbjct: 132 ---------------FVYLSKLKEL------------WLRNNPIESIPSYAF-------- 156

Query: 404 PPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLT 463
                     + +L+ L+L        ++    E    F  G  NL  + L  C  +++ 
Sbjct: 157 --------NRIPSLRRLDLGELK----RLSYISE--GAFE-GLSNLRYLNLAMCNLREIP 201

Query: 464 WLVFVQNLKQLNMQGFTMEEI--------ISVEKLS----DISEVIGSEHNFF---PRLE 508
            L  +  L +L++ G  +  I        + ++KL      I  +   E N F     L 
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI---ERNAFDNLQSLV 258

Query: 509 YLTMWRGTNLKSVYPNP-QPFPKLKKIQ----AFHC 539
            + +    NL  +  +   P   L++I      ++C
Sbjct: 259 EINL-AHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
            ++ +    + S+  I     L  L L+GN+I +I+     +L  L  L +  N    T 
Sbjct: 47  TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN--KITD 102

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
            S +  L +L  L L+  +I+ +   L  L K+  LNL    +LS +    +S  + L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNY 159

Query: 329 LRLCGC 334
           L +   
Sbjct: 160 LTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 51/348 (14%), Positives = 110/348 (31%), Gaps = 67/348 (19%)

Query: 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           GA  ++     I  +         +  +L    + ++     + L ++  L + G    S
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL 326
               GI  L +L +L+L+   IT +   L  L KL  L +     ++ I    +   + L
Sbjct: 59  --IQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTN-KITDISA--LQNLTNL 112

Query: 327 EVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKY-P 385
             L L              + + D     +  L  L  +  L+     +L+    L    
Sbjct: 113 RELYL------------NEDNISD-----ISPLANLTKMYSLNLGANHNLSDLSPLSNMT 155

Query: 386 KLVS-------ITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV 438
            L         +                +V  +A + +L  L L    +E++       +
Sbjct: 156 GLNYLTVTESKVK---------------DVTPIANLTDLYSLSLNYNQIEDI-----SPL 195

Query: 439 KKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIG 498
             L      +L+       +  D+T +  +  L  L +    + ++  +  LS ++ +  
Sbjct: 196 ASL-----TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250

Query: 499 SEHNFFPRLEYLTMWRGTNLKSVY------PNPQPFPKLKKIQAFHCR 540
              N    +  +     T LK +        +      L ++ +    
Sbjct: 251 G-TNQISDINAVKDL--TKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 6e-14
 Identities = 57/355 (16%), Positives = 115/355 (32%), Gaps = 79/355 (22%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
           K+     +E     + ++L  N I  +S +    +L  L +  N+I +I+    Q+L+ L
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNL 112

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
           R L L  +   S +   ++ L  ++ L+L +         L  +  L YL +  +  +  
Sbjct: 113 RELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKD 169

Query: 315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374
           +    I+  + L  L L              N + D     +  L  L  L+        
Sbjct: 170 VTP--IANLTDLYSLSL------------NYNQIED-----ISPLASLTSLHYF------ 204

Query: 375 SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS 434
                      ++  IT                   +A M  L  L++ +      KI  
Sbjct: 205 ------TAYVNQITDIT------------------PVANMTRLNSLKIGNN-----KITD 235

Query: 435 TEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSD-- 492
              +  L       L  + + + +  D+  +  +  LK LN+    + +I  +  LS   
Sbjct: 236 LSPLANL-----SQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLN 290

Query: 493 --------ISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHC 539
                   +             L  L +    ++  +    +P   L K+ +   
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFL-SQNHITDI----RPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             + +  N I  ++ +    +L  L +  N+I +I+     +LS L  L L  N   +  
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED 303

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY 308
              I GL +L  L LS   IT +   L +L K+   +   
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 63/263 (23%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGL 275
           + +  LS +     L  L +  ++++++T     +L+ L  LSL  N       S ++ L
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN--QIEDISPLASL 198

Query: 276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335
            SLH+       IT +   +  + +L  L +       + P   ++  S+L  L +    
Sbjct: 199 TSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEI---- 250

Query: 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVW 395
                     N + D     +  +  L  L +L+            +   ++  I+    
Sbjct: 251 --------GTNQISD-----INAVKDLTKLKMLN------------VGSNQISDIS---- 281

Query: 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455
                          L  +  L  L L +  L    +   E +  L      NL T+ L 
Sbjct: 282 --------------VLNNLSQLNSLFLNNNQLGNEDM---EVIGGL-----TNLTTLFLS 319

Query: 456 SCRGKDLTWLVFVQNLKQLNMQG 478
                D+  L  +  +   +   
Sbjct: 320 QNHITDIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           K +++ +N I  +S +    +L +L L+ N++          L+ L  L L  N   + +
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDI 326

Query: 269 PSGISGLVSLHHLDLSSTDIT 289
              ++ L  +   D ++  I 
Sbjct: 327 RP-LASLSKMDSADFANQVIK 346

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 63/353 (17%), Positives = 113/353 (32%), Gaps = 57/353 (16%)

Query: 209 KRISLTANGIGSLSEIP--TCPRLVTLLLDGNRIEEITDG-FFQSLSTLRVLSLRGNFPP 265
           +++      + SL   P      L  L +  N I+      +F +L+ L  L L  N   
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 266 STLPSGISGLVSLH----HLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLIS 321
           S   + +  L  +      LDLS   +  +        +L  L L   F    +    I 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 322 CFSKLEVLRLCGCG--RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQ 379
             + LEV RL        G ++  + + L +G   L  E   L +L+             
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 380 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK 439
             +    LVS+T                V   +Y    Q LEL +C   +          
Sbjct: 282 TNVSSFSLVSVTIE-------------RVKDFSYNFGWQHLELVNCKFGQ---------- 318

Query: 440 KLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG--FTMEEIISVE--------- 488
                  ++L  +   S +G +    V + +L+ L++     + +   S           
Sbjct: 319 -FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 489 ------KLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQ 535
                  +  +S           +LE+L   + +NLK +      F  L+ + 
Sbjct: 378 LDLSFNGVITMSSNFLG----LEQLEHLDF-QHSNLKQM-SEFSVFLSLRNLI 424

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 209 KRISLTANGIGSLSEIPT---CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-FP 264
           + +    + +  +SE         L+ L +         +G F  LS+L VL + GN F 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 265 PSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCF 323
            + LP   + L +L  LDLS   +  L      +L  L+ LN+     L  +P  +    
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL 517

Query: 324 SKLEVLRL------CGCGR 336
           + L+ + L      C C R
Sbjct: 518 TSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 61/373 (16%), Positives = 116/373 (31%), Gaps = 63/373 (16%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLV 276
           +  +IP         L L  N +  +    F S   L+VL L       T+  G    L 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS 76

Query: 277 SLHHLDLSSTDITGLPQE-------------------------LKALEKLRYLNLDYAFH 311
            L  L L+   I  L                            +  L+ L+ LN+ +   
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 312 LSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLC----------------DGAEPL 355
            S    +  S  + LE L L    +   I   +  VL                 +  +P 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 356 MKELLGLKHLNVLSWSFGSSLAVQKF--LKYPKLVSITQSVWVECGTYTRPPFNVLHLAY 413
             + + L  L + +     ++       L   ++  +    +   G   +   + L    
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL---- 251

Query: 414 MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQ 473
            E L  L +E   L  +     +++  LF N   N+++  L S   + +    +    + 
Sbjct: 252 -EGLCNLTIEEFRLAYLDY-YLDDIIDLF-NCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 474 LNM-----QGFTMEEIISVEKLSDISEVIGSEHNFF--PRLEYLTMWRGTNLKSVYPNPQ 526
           L +       F   ++ S+++L+  S   G+  +    P LE+L +     L       Q
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQ 367

Query: 527 PFPKLKKIQAFHC 539
                  ++    
Sbjct: 368 SDFGTTSLKYLDL 380

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 5/141 (3%)

Query: 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLS 252
            V +          G + + L     G    +     L  L    N+           L 
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNA--FSEVDLP 347

Query: 253 TLRVLSLRGNF--PPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF 310
           +L  L L  N             G  SL +LDLS   +  +      LE+L +L+  ++ 
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 311 HLSIIPHQLISCFSKLEVLRL 331
              +    +      L  L +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDI 428

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 44/275 (16%), Positives = 82/275 (29%), Gaps = 61/275 (22%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
              SL +  I  + +         L L   +  +        L +L+ L+   N      
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSN-KGGNA 340

Query: 269 PSGISGLVSLHHLDLSSTDITGL---PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK 325
            S +  L SL  LDLS   ++      Q       L+YL+L +   +  +         +
Sbjct: 341 FSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-FLGLEQ 397

Query: 326 LEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP 385
           LE L          +                   L L++L  L             + + 
Sbjct: 398 LEHLDFQHS-NLKQM-------------SEFSVFLSLRNLIYLD------------ISHT 431

Query: 386 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445
                   +                   + +L+ L++   + +E  +        +F   
Sbjct: 432 HTRVAFNGI----------------FNGLSSLEVLKMAGNSFQENFLPD------IFTE- 468

Query: 446 FRNLNTVVLRSCRGKDLTWLVFV--QNLKQLNMQG 478
            RNL  + L  C+ + L+   F    +L+ LNM  
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 6e-15
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 209 KRISLTANGIGSLSEIPTC---PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
             + L+ N +  L    T      L +LLL  N +  I+   F  +  LR L L  N   
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HL 100

Query: 266 STLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCF 323
            TL   + S L +L  L L +  I  + +   + + +L+ L L     +S  P +LI   
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDG 159

Query: 324 SKLEVLRL 331
           +KL  L L
Sbjct: 160 NKLPKLML 167

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 32/143 (22%), Positives = 46/143 (32%), Gaps = 23/143 (16%)

Query: 210 RISLTANGIGSLSEIPT-----CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP 264
            + L+ N +   + I +      P L  L L  N +  + +  F  L  L VL L  N  
Sbjct: 68  SLLLSHNHL---NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-H 123

Query: 265 PSTLPSGI-SGLVSLHHLDLSSTDITGLPQE----LKALEKLRYLNLDYAFHLSIIPHQL 319
              +       +  L  L LS   I+  P E       L KL  L+L     L  +P   
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTD 182

Query: 320 ISCFSKLEVLRL--------CGC 334
           +          L        C C
Sbjct: 183 LQKLPAWVKNGLYLHNNPLECDC 205

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 66/287 (22%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
            +I+ + N +  ++ +    +LV +L++ N+I +IT     +L+ L  L+L  N    T 
Sbjct: 71  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITD 126

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              +  L +L+ L+LSS  I+ +   L  L  L+ L+        + P   ++  + LE 
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQV-TDLKP---LANLTTLER 181

Query: 329 LRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV 388
           L +              N + D     +  L  L +L  L                 ++ 
Sbjct: 182 LDI------------SSNKVSD-----ISVLAKLTNLESLI------------ATNNQIS 212

Query: 389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN 448
            IT                   L  + NL EL L    L+++       +  L      N
Sbjct: 213 DIT------------------PLGILTNLDELSLNGNQLKDI-----GTLASL-----TN 244

Query: 449 LNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISE 495
           L  + L + +  +L  L  +  L +L +    +  I  +  L+ ++ 
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 291

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 45/283 (15%), Positives = 103/283 (36%), Gaps = 44/283 (15%)

Query: 213 LTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI 272
                I  +         +  +L    + +        L  +  L             G+
Sbjct: 9   TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGV 64

Query: 273 SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLC 332
             L +L  ++ S+  +T +   LK L KL  + ++    ++ I    ++  + L  L L 
Sbjct: 65  EYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTL- 119

Query: 333 GCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQ 392
                        N + D     +  L  L +LN L  S  +   +        L  ++ 
Sbjct: 120 -----------FNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 393 SVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTV 452
                         ++  LA +  L+ L++ S  + ++       + KL      NL ++
Sbjct: 164 G---------NQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKL-----TNLESL 204

Query: 453 VLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISE 495
           +  + +  D+T L  + NL +L++ G  +++I ++  L+++++
Sbjct: 205 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD 247

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 61/338 (18%), Positives = 114/338 (33%), Gaps = 75/338 (22%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             ++L  N I  +  +     L  L L  N I +I+      L++L+ LS        T 
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQV---TD 169

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              ++ L +L  LD+SS  ++ +   L  L  L  L       +S I    +   + L+ 
Sbjct: 170 LKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN-QISDITP--LGILTNLDE 225

Query: 329 LRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV 388
           L L             GN L D     +  L  L +L  L             L   ++ 
Sbjct: 226 LSL------------NGNQLKD-----IGTLASLTNLTDLD------------LANNQIS 256

Query: 389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN 448
           ++                    L+ +  L EL+L +      +I +   +  L       
Sbjct: 257 NLA------------------PLSGLTKLTELKLGAN-----QISNISPLAGL-----TA 288

Query: 449 LNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLE 508
           L  + L   + +D++ +  ++NL  L +    + +I  V  L+ +  +    +N    + 
Sbjct: 289 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY-NNKVSDVS 347

Query: 509 YLTMWRGTNLKSVY------PNPQPFPKLKKIQAFHCR 540
            L     TN+  +        +  P   L +I      
Sbjct: 348 SLANL--TNINWLSAGHNQISDLTPLANLTRITQLGLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 65/270 (24%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           +R+ +++N +  +S +     L +L+   N+I +IT      L+ L  LSL GN      
Sbjct: 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KD 235

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              ++ L +L  LDL++  I+ L   L  L KL  L L      +I P   ++  + L  
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP---LAGLTALTN 291

Query: 329 LRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV 388
           L L              N L D     +  +  LK+L  L+            L +  + 
Sbjct: 292 LEL------------NENQLED-----ISPISNLKNLTYLT------------LYFNNIS 322

Query: 389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN 448
            I+                   ++ +  LQ L     N    K+     +  L      N
Sbjct: 323 DIS------------------PVSSLTKLQRLFF-YNN----KVSDVSSLANL-----TN 354

Query: 449 LNTVVLRSCRGKDLTWLVFVQNLKQLNMQG 478
           +N +     +  DLT L  +  + QL +  
Sbjct: 355 INWLSAGHNQISDLTPLANLTRITQLGLND 384

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 54/297 (18%), Positives = 103/297 (34%), Gaps = 66/297 (22%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            +T+     + +    +     GI S+  +     L  +    N++ +IT    ++L+ L
Sbjct: 35  NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKL 92

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
             + +  N       + ++ L +L  L L +  IT +   LK L  L  L L     +S 
Sbjct: 93  VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISD 148

Query: 315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374
           I    +S  + L+ L               GN + D     +K L  L  L  L      
Sbjct: 149 ISA--LSGLTSLQQLSF-------------GNQVTD-----LKPLANLTTLERLD----- 183

Query: 375 SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS 434
                  +   K+  I+                   LA + NL+ L   +  + ++    
Sbjct: 184 -------ISSNKVSDIS------------------VLAKLTNLESLIATNNQISDI---- 214

Query: 435 TEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS 491
              +  L      NL+ + L   + KD+  L  + NL  L++    +  +  +  L+
Sbjct: 215 -TPLGIL-----TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 265

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 27/140 (19%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
           +++    +        + L AN I ++S +     L  L L+ N++E+I+     +L  L
Sbjct: 254 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 311

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
             L+L  N    +  S +S L  L  L   +  ++ +   L  L  + +L+  +   +S 
Sbjct: 312 TYLTLYFN--NISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN-QISD 367

Query: 315 IPHQLISCFSKLEVLRLCGC 334
           +    ++  +++  L L   
Sbjct: 368 LTP--LANLTRITQLGLNDQ 385

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             ++L  N I  +S + +  +L  L    N++ +++     +L+ +  LS   N    + 
Sbjct: 312 TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHN--QISD 367

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
            + ++ L  +  L L+    T  P        +   N       ++I    IS       
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 329 LRL 331
             +
Sbjct: 426 PDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
           K+++   +        +S   N I  L+ +    R+  L L+          +  ++S  
Sbjct: 342 KVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ 293
              +++        P+ IS   S    D++    +   +
Sbjct: 402 N--TVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 49/243 (20%), Positives = 80/243 (32%), Gaps = 26/243 (10%)

Query: 207 GAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP 264
             K + L+ N I  +S   +  C  L  L+L  N I  I +  F SL +L  L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-Y 111

Query: 265 PSTLPSGI-SGLVSLHHLDLSSTDITGLPQE--LKALEKLRYLNLDYAFHLSIIPHQLIS 321
            S L S     L SL  L+L       L +      L KL+ L +      + I  +  +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 322 CFSKLEVLRLCGC-------GRFG--------VIKGKEGNVLCDGAEPLMKELLGLK-HL 365
             + LE L +                      ++  K+  +L +    +   +  L+   
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC 425
             L     S L+  +     K  +       +   +         L  +  L ELE    
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL----LNQISGLLELEFSRN 287

Query: 426 NLE 428
            L+
Sbjct: 288 QLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 66/336 (19%), Positives = 100/336 (29%), Gaps = 70/336 (20%)

Query: 220 SLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
           SL+ IP+     + +L L  NRI  I++   Q    L+ L L  N   +T+     S L 
Sbjct: 42  SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLG 100

Query: 277 SLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335
           SL HLDLS   ++ L     K L  L +LNL        +     S FS L  L++   G
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGET--SLFSHLTKLQILRVG 157

Query: 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVW 395
                       +            GL  L  L             +    L S      
Sbjct: 158 NMDTFT-----KIQRKD------FAGLTFLEELE------------IDASDLQSYEPKS- 193

Query: 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455
                          L  ++N+  L L       +     +    +     R+ +   L 
Sbjct: 194 ---------------LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD---LD 235

Query: 456 SCRGKDLTWLVF--VQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMW 513
           +    +L+      +           T E +  V KL +              L  L   
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ----------ISGLLELEF- 284

Query: 514 RGTNLKSVYPN-PQPFPKLKKIQAFH------CRQL 542
               LKSV          L+KI          C ++
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 209 KRISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
           + + +T   +  + ++      L+ L    N+++ + DG F  L++L+ + L  N
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 216 NGIGSLS---EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI 272
             + S     E      L +L L+   I  +       L  L+ L +R + P S L   I
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN-LQNLKSLKIRNS-PLSALGPAI 225

Query: 273 SGLVSLHHLDLSS-TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
             L  L  LDL   T +   P        L+ L L    +L  +P   I   ++LE L L
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDL 284

Query: 332 CGCGRFGVI 340
            GC     +
Sbjct: 285 RGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 212 SLTANGIGSLSEIP------TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
            +      +L          T P  V L L    + +  D  F+ LS L+ +++      
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAA-GL 116

Query: 266 STLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQL------ 319
             LP  +     L  L L+   +  LP  + +L +LR L++     L+ +P  L      
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 320 --ISCFSKLEVLRLCGC 334
                   L+ LRL   
Sbjct: 177 GEHQGLVNLQSLRLEWT 193

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 209 KRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267
           + + L   GI SL + I     L +L +  + +  +       L  L  L LRG      
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH-LPKLEELDLRGCTALRN 244

Query: 268 LPSGISGLVSLHHLDLSS-TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL 326
            P    G   L  L L   +++  LP ++  L +L  L+L    +LS +P  LI+     
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPAN 303

Query: 327 EVLRLCGC 334
            ++ +   
Sbjct: 304 CIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%)

Query: 209 KRISLTANGIGSL-SEIPTCPRLVTLLLDG-NRIEEITDGF--------FQSLSTLRVLS 258
           + ++L  N + +L + I +  RL  L +     + E+ +           Q L  L+ L 
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 259 LRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQ 318
           L       +LP+ I+ L +L  L + ++ ++ L   +  L KL  L+L     L   P  
Sbjct: 190 LEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 319 LISCFSKLEVLRLCGC 334
                + L+ L L  C
Sbjct: 249 -FGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 209 KRISLTANGIGSL-SEIPTCPRLVTLLLDG-NRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K + +  + + +L   I   P+L  L L G   +      F    + L+ L L+      
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLL 267

Query: 267 TLPSGISGLVSLHHLDLSS-TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLIS 321
           TLP  I  L  L  LDL    +++ LP  +  L     + +       +  H+ ++
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 53/340 (15%), Positives = 108/340 (31%), Gaps = 74/340 (21%)

Query: 212 SLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG 271
           +L   G  +L              + +R    +     + +  ++ +  G    +     
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA-TADL 74

Query: 272 ISGLVS--LHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVL 329
           +          L+L S  +   P +   L  L+++ +D A  L  +P   +  F+ LE L
Sbjct: 75  LEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETL 132

Query: 330 RLCGCGRFGVIKGKEGNVLCDGAEPLM---KELLGLKHLNVLSWSFGSSLAVQKFLKYPK 386
            L                      PL      +  L  L  LS               P+
Sbjct: 133 TLARN-------------------PLRALPASIASLNRLRELSIR-----------ACPE 162

Query: 387 LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGF 446
           L  + + +     +             + NLQ L LE   +  +       +  L     
Sbjct: 163 LTELPEPL----ASTDASG----EHQGLVNLQSLRLEWTGIRSL----PASIANL----- 205

Query: 447 RNLNTVVLRSCRGKDL-TWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFP 505
           +NL ++ +R+     L   +  +  L++L+++G T         L +   + G       
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT--------ALRNYPPIFGG----RA 253

Query: 506 RLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAF---HCRQL 542
            L+ L +   +NL ++   P    +L +++      C  L
Sbjct: 254 PLKRLILKDCSNLLTL---PLDIHRLTQLEKLDLRGCVNL 290

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 4/116 (3%)

Query: 220 SLSEIPTCPRLVT-LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVS 277
            L ++P  P  V  + L  N I E+ +  F  L  L+ L +    P   + +    GL S
Sbjct: 21  GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 278 LHHLDLSSTDITGLPQE-LKALEKLRYLNLDY-AFHLSIIPHQLISCFSKLEVLRL 331
           L  L L       L       L  L  L L       +++        + LE+L L
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 209 KRISLTANGIGSLSE-IPT-CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K   L+ + I +L + + +    L  L L  N I +I D  F  L+ L  L+L  NF   
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LG 336

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           ++ S +   L  L  LDLS   I  L  +    L  L+ L LD    L  +P  +    +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLT 395

Query: 325 KLEVLRL------CGCGR 336
            L+ + L      C C R
Sbjct: 396 SLQKIWLHTNPWDCSCPR 413

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 212 SLTANGIGSLSEIP----TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267
           S                     + T  L  ++I  +    F   + L  L+L  N   + 
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINK 313

Query: 268 LPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSK 325
           +      GL  L  L+LS   +  +   + + L+KL  L+L Y  H+  +  Q       
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPN 372

Query: 326 LEVLRL 331
           L+ L L
Sbjct: 373 LKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 19/182 (10%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEE--ITDGFFQSLSTLRVLSLRGNFP 264
             + L  N    L          L  L L    ++   ++  FF+ L++L +L LR N  
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 265 PSTLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEK--LRYLNLDYAFHLSIIPHQLI 320
               P+     +   H LDL+   +  + +E L   +      L L       +  + L 
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 321 SC-------FSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFG 373
                     + +  L L G G     K        D       + L L +   +  SFG
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNG----FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 374 SS 375
            +
Sbjct: 258 HT 259

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 31/162 (19%), Positives = 49/162 (30%), Gaps = 24/162 (14%)

Query: 219 GSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FPPSTLPSGISG 274
           G L    +  +L +L L  N+I EI   F      +  LS   N     P          
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF---DAKS 400

Query: 275 LVSLHHLDLSSTDITG--------LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL 326
           +  +  +D S  +I          L         +  +NL     +S  P +L S  S L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPL 459

Query: 327 EVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVL 368
             + L G      +     N L    +   +       L  +
Sbjct: 460 SSINLMGNM----LTEIPKNSL----KDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)

Query: 213 LTANGIGSLSEIPT----CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FP 264
           + +    +   +         + ++ L  N+I +     F + S L  ++L GN     P
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 265 P---STLPSGISGLVSLHHLDLSSTDITGLPQELKA--LEKLRYLNLDYAFHLSIIPHQL 319
                           L  +DL    +T L  + +A  L  L  ++L Y    S  P Q 
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP 532

Query: 320 ISCFSKLEVLRL 331
           ++  S L+   +
Sbjct: 533 LNS-STLKGFGI 543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 16/124 (12%)

Query: 220 SLSEIP------TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS------T 267
            L+++       T P LV + L  N   +         STL+   +R             
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLRE 557

Query: 268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLE 327
            P GI+   SL  L + S DI  + +++     +  L++    ++SI    +   + +  
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCP-YIEAG 614

Query: 328 VLRL 331
           +  L
Sbjct: 615 MYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 21/141 (14%)

Query: 209 KRISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEITDGF-------FQSLSTLRVLSL 259
             I+L+ N I         T   L ++ L GN + EI           F++   L  + L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 260 RGN-FPPSTLPSGI--SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLS--- 313
           R N    + L      + L  L  +DLS    +  P +      L+   +          
Sbjct: 496 RFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 314 ---IIPHQLISCFSKLEVLRL 331
                P  +  C   L  L++
Sbjct: 554 TLREWPEGITLC-PSLTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 24/246 (9%), Positives = 60/246 (24%), Gaps = 58/246 (23%)

Query: 212 SLTANGIGSL-SEIPTCPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGNFPPSTL 268
               N        I                +   +     +  S L    +  +    ++
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL-------------------DYA 309
                  +    +   S +IT + + +  L KLR   +                   +YA
Sbjct: 176 KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

Query: 310 FHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLS 369
                   +       L  + +  C     +             P    L  L  + ++ 
Sbjct: 236 QQYKTEDLK-WDNLKDLTDVEVYNCPNLTKL-------------P--TFLKALPEMQLI- 278

Query: 370 WSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEE 429
                ++A  + +   +L                    +      E +Q + +   NL+ 
Sbjct: 279 -----NVACNRGISGEQLKDD--------------WQALADAPVGEKIQIIYIGYNNLKT 319

Query: 430 MKIDST 435
             ++++
Sbjct: 320 FPVETS 325

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 32/311 (10%), Positives = 72/311 (23%), Gaps = 63/311 (20%)

Query: 199 APKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLS 258
                 W   K + +     G    + +  R+  L L+G             L+ L VL+
Sbjct: 54  TQPGANWNFNKELDMWGAQPGV--SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLA 111

Query: 259 LRGNF----PPSTLPSGISGLVSLHHLDLSSTDITG------------------------ 290
           L  +          P GIS  +S                                     
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 291 ---LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV 347
              + +  +   K   +      +++ +   ++   +KL    +           +    
Sbjct: 172 QKSIKKSSRITLKDTQIGQLS-NNITFVSKAVMRL-TKLRQFYMGNSPFVAENICEAWE- 228

Query: 348 LCDGAEPLMKELLGLKHLNVLSWSFG--SSLAVQKFLKYPKLVSITQSVWVECGTYTRPP 405
                    +     +        +     L   +    P L  +             P 
Sbjct: 229 --------NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-------------PT 267

Query: 406 FNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWL 465
           F    L  +  +Q + +        +    +            +  + +     K     
Sbjct: 268 F----LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 466 VFVQNLKQLNM 476
             +Q +K+L M
Sbjct: 324 TSLQKMKKLGM 334

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 7/81 (8%)

Query: 216 NGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
             +      I  CP L  L +  N I ++ +    ++    VL ++ N   S   S +  
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCP 609

Query: 275 LVSLHHLDLS---STDITGLP 292
            +      L    + DI G  
Sbjct: 610 YIEAGMYMLFYDKTQDIRGCD 630

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            L E   +E     + + L  N    + E+   P + TL    N I  ++    Q     
Sbjct: 69  VLYETLDLESLSTLRTLDLNNN---YVQELLVGPSIETLHAANNNISRVSCSRGQG---K 122

Query: 255 RVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTDITGLP--QELKALEKLRYLNLDYAFH 311
           + + L  N   + L          + +LDL   +I  +   +   + + L +LNL Y   
Sbjct: 123 KNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-F 180

Query: 312 LSIIPHQLISCFSKLEVLRL 331
           +  +  Q+   F+KL+ L L
Sbjct: 181 IYDVKGQV--VFAKLKTLDL 198

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 20/172 (11%)

Query: 209 KRISLTANGIGSLSE---IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
           + + L  N I +++      +   L  L L  N I ++        + L+ L L  N   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL- 203

Query: 266 STLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY---------AFHLSIIP 316
           + +         +  + L +  +  + + L+  + L + +L            F      
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 317 HQLISC--FSKLEVLRLCGCGRFGVIKGKEGNVLCDG-AEPLMKELLGLKHL 365
            Q ++     KL       C    +     G   C+    P    L+ L H 
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLG--HYGAYCCEDLPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 220 SLSEIPT-CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FPPSTLPSGISG 274
           ++ EI     R     +  + +++      QS   ++ L L GN       +     ++ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD----LAP 56

Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
              L  L+LSS  +     +L++L  LR L+L+   ++  +          +E L  
Sbjct: 57  FTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHA 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K   +T + +         +   +  L L GN + +I+       + L +L+L  N    
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLY 71

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL 326
                +  L +L  LDL++  +     EL     +  L+     ++S +     S     
Sbjct: 72  ETLD-LESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANN-NISRVS---CSRGQGK 122

Query: 327 EVLRL 331
           + + L
Sbjct: 123 KNIYL 127

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 38/273 (13%), Positives = 80/273 (29%), Gaps = 67/273 (24%)

Query: 247 FFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLN 305
             Q+ +  ++  +  +     L S      ++  LDLS   ++ +   +L    KL  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365
           L     L       +   S L  L L              N + +     +     ++ L
Sbjct: 65  LSSN-VLYETLD--LESLSTLRTLDL------------NNNYVQE-----LLVGPSIETL 104

Query: 366 NV-------LSWSFGSSLAVQK-FLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENL 417
           +        +S S G     +  +L   K+  +                +    +    +
Sbjct: 105 HAANNNISRVSCSRGQGK--KNIYLANNKITML-------------RDLDEGCRS---RV 146

Query: 418 QELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQ 477
           Q L+L+   ++ +                  L  + L+     D+   V    LK L++ 
Sbjct: 147 QYLDLKLNEIDTVNFAE-------LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199

Query: 478 GFTMEEIISVEKLSDISEVIGSEHNFFPRLEYL 510
                      KL+ +     S       + ++
Sbjct: 200 S---------NKLAFMGPEFQS----AAGVTWI 219

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 220 SLSEIPTCPR-LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVS 277
            +  IP+ P    TL L    +  I    F +L  +  + +  +     L S     L  
Sbjct: 22  DIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 278 LHHLDLSST-DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           + H+++ +T ++T +  + LK L  L++L +     L + P   ++     ++  +
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFI 134

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 221 LSEIPT------CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-S 273
           ++ IP       C   +TL L  N    +    F + + L  + L  N   + +      
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 274 GLVS-LHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHL 312
           G+ S    LD+S T +T LP +   LE L+ L     + L
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 11/132 (8%)

Query: 209 KRISLTANGIGSLSEIPT-----CPRLVTLLLDGNRIEEITDG-FFQSLSTLRVLSLRGN 262
             I +      +L+ I        P L  L +    ++   D     S     +L +  N
Sbjct: 83  THIEIRNTR--NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 263 FPPSTLPSGI-SGLVS-LHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIP-HQL 319
              +++P     GL +    L L +   T +        KL  + L+   +L++I     
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 320 ISCFSKLEVLRL 331
              +S   +L +
Sbjct: 201 GGVYSGPSLLDV 212

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
            L+EIPT     +  + L+ N I+ I  G F     LR + L  N   S L      GL 
Sbjct: 22  GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLR 80

Query: 277 SLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           SL+ L L    IT LP+ L + L  L+ L L+    ++ +          L +L L
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSL 135

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 209 KRISLTANGIGSLSEIPT-----CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263
           +RI L+ N    +SE+          L +L+L GN+I E+    F+ L +L++L L  N 
Sbjct: 59  RRIDLSNN---QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN- 114

Query: 264 PPSTLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLD 307
             + L       L +L+ L L    +  + +     L  ++ ++L 
Sbjct: 115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSS 285
             L  LLL+ N+I  +    FQ L  L +LSL  N    T+  G  S L ++  + L+ 
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 209 KRISLTANGIGSLSEIPT---CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
             + L  N    L         P+L  +    N+I +I +G F+  S +  + L  N   
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RL 93

Query: 266 STLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCF 323
             +   +  GL SL  L L S  IT +  +    L  +R L+L     ++ +        
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTL 152

Query: 324 SKLEVLRL------CGC 334
             L  L L      C C
Sbjct: 153 HSLSTLNLLANPFNCNC 169

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 60/298 (20%), Positives = 104/298 (34%), Gaps = 66/298 (22%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            +T+     + +G   +S    G+ ++  +     L+ L L  N+I ++     ++L+ +
Sbjct: 30  NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKI 87

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
             L L GN  P    S I+GL S+  LDL+ST IT +   L  L  L+ L LD    ++ 
Sbjct: 88  TELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLN-QITN 143

Query: 315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374
           I    ++  + L+ L +                + D     +  L  L  L  L      
Sbjct: 144 ISP--LAGLTNLQYLSI------------GNAQVSD-----LTPLANLSKLTTLK----- 179

Query: 375 SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS 434
                      K+  I+                   LA + NL E+ L++      +I  
Sbjct: 180 -------ADDNKISDISP------------------LASLPNLIEVHLKNN-----QISD 209

Query: 435 TEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSD 492
              +         NL  V L +    +        NL   N+        I+   +SD
Sbjct: 210 VSPLANT-----SNLFIVTLTNQTITNQPVFYN-NNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 8e-12
 Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 65/281 (23%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGL 275
             I  +   P     + +    + + +        L  +  LS  G    +T+  G+  L
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGT-GVTTI-EGVQYL 62

Query: 276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335
            +L  L+L    IT L   LK L K+  L L     L  +    I+    ++ L L    
Sbjct: 63  NNLIGLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDL---- 114

Query: 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVW 395
                       + D     +  L GL +L VL             L   ++ +I+    
Sbjct: 115 --------TSTQITD-----VTPLAGLSNLQVLY------------LDLNQITNIS---- 145

Query: 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455
                          LA + NLQ L + +      ++     +  L       L T+   
Sbjct: 146 --------------PLAGLTNLQYLSIGNA-----QVSDLTPLANL-----SKLTTLKAD 181

Query: 456 SCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEV 496
             +  D++ L  + NL +++++   + ++  +   S++  V
Sbjct: 182 DNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 49/271 (18%), Positives = 93/271 (34%), Gaps = 65/271 (23%)

Query: 208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267
           A +I+   + +           + TL   G  +  I     Q L+ L  L L+ N    T
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDN--QIT 76

Query: 268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLE 327
             + +  L  +  L+LS   +  +   +  L+ ++ L+L     ++ +    ++  S L+
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQ 132

Query: 328 VLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKL 387
           VL L            + N + +     +  L GL +L  LS            +   ++
Sbjct: 133 VLYL------------DLNQITN-----ISPLAGLTNLQYLS------------IGNAQV 163

Query: 388 VSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFR 447
             +T                   LA +  L  L+    N    KI     +  L      
Sbjct: 164 SDLT------------------PLANLSKLTTLKA-DDN----KISDISPLASL-----P 195

Query: 448 NLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG 478
           NL  V L++ +  D++ L    NL  + +  
Sbjct: 196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 6e-13
 Identities = 60/331 (18%), Positives = 108/331 (32%), Gaps = 71/331 (21%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            + +    + +    + +L    +           +  ++ + + I+ +     Q L  +
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNV 67

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
             L L GN    T    ++ L +L  L L    I  L   LK L+KL+ L+L++   +S 
Sbjct: 68  TKLFLNGN--KLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHN-GISD 123

Query: 315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374
           I    +    +LE L L              N + D     +  L  L  L+ LS     
Sbjct: 124 ING--LVHLPQLESLYL------------GNNKITD-----ITVLSRLTKLDTLS----- 159

Query: 375 SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS 434
                  L+  ++  I                    LA +  LQ L      L +  I  
Sbjct: 160 -------LEDNQISDIVP------------------LAGLTKLQNL-----YLSKNHISD 189

Query: 435 TEEVKKLFRNGFRNLNTVVLRSCRGKD-----LTWLVFVQNLKQLNMQGFTMEEIISVEK 489
              +  L     +NL+ + L S    +      + LV    +K  +       EIIS + 
Sbjct: 190 LRALAGL-----KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS-LVTPEIISDDG 243

Query: 490 LSDISEVIGSEHNFFPRLEYLTMWRGTNLKS 520
             +   V      F   + ++     T  K+
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 48/306 (15%), Positives = 96/306 (31%), Gaps = 79/306 (25%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
           +   +     I++I      + +     +L+      T     + L S+  +  +++DI 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK 56

Query: 290 GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLC 349
            + Q ++ L  +  L L+      I P   ++    L  L L              N + 
Sbjct: 57  SV-QGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDE------------NKIK 100

Query: 350 DGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVL 409
           D     +  L  LK L  LS            L++  +  I                   
Sbjct: 101 D-----LSSLKDLKKLKSLS------------LEHNGISDIN------------------ 125

Query: 410 HLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQ 469
            L ++  L+ L L +      KI     + +L       L+T+ L   +  D+  L  + 
Sbjct: 126 GLVHLPQLESLYLGNN-----KITDITVLSRL-----TKLDTLSLEDNQISDIVPLAGLT 175

Query: 470 NLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFP 529
            L+ L          +S   +SD+  + G        L+ L ++    L     +     
Sbjct: 176 KLQNLY---------LSKNHISDLRALAG-----LKNLDVLELFSQECLNKPINHQSNLV 221

Query: 530 KLKKIQ 535
               ++
Sbjct: 222 VPNTVK 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 35/302 (11%), Positives = 94/302 (31%), Gaps = 28/302 (9%)

Query: 209 KRISLTANGIGSLSE---IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
           + + L  N I +++      +   L  L L  N I ++        + L+ L L  N   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL- 203

Query: 266 STLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK 325
           + +         +  + L +  +  + + L+  + L + +L              S   +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 326 LEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP 385
           ++ +          +K   G    +   P +           L   F   L   K  ++ 
Sbjct: 264 VQTVAK------QTVKKLTGQNEEECTVPTLGHYGAY-CCEDLPAPFADRLIALKRKEHA 316

Query: 386 KL-VSITQSVWVECGTYTRPPFNVLHLAY-------------MENLQELELESCNLEEMK 431
            L    +++  +EC    +     +                  +    LE +   L+E  
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 432 IDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS 491
            +      +L     + +  + L+    ++ + L  ++ + +   + +  ++ +    + 
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIELQHAT-EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435

Query: 492 DI 493
           D 
Sbjct: 436 DW 437

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            L E   +E     + + L  N    + E+   P + TL    N I  ++    Q     
Sbjct: 69  VLYETLDLESLSTLRTLDLNNN---YVQELLVGPSIETLHAANNNISRVSCSRGQG---K 122

Query: 255 RVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTDITGLPQE--LKALEKLRYLNLDYAFH 311
           + + L  N   + L          + +LDL   +I  +       + + L +LNL Y   
Sbjct: 123 KNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-F 180

Query: 312 LSIIPHQLISCFSKLEVLRL 331
           +  +  Q+   F+KL+ L L
Sbjct: 181 IYDVKGQV--VFAKLKTLDL 198

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 209 KRISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K   +T + +     S   +   +  L L GN + +I+       + L +L+L  N    
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLY 71

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL 326
                +  L +L  LDL++  +  L         +  L+     ++S +     S     
Sbjct: 72  ETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVS---CSRGQGK 122

Query: 327 EVLRL 331
           + + L
Sbjct: 123 KNIYL 127

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 42/317 (13%), Positives = 95/317 (29%), Gaps = 78/317 (24%)

Query: 220 SLSEIPT-CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSL 278
           ++ EI     R     +  + +++      QS   ++ L L GN       + ++    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 279 HHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338
             L+LSS  +     +L++L  LR L+L+   ++  +          +E L         
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHA------- 106

Query: 339 VIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVEC 398
                  N +   +    +   G K++                L   K+  +        
Sbjct: 107 -----ANNNISRVSCSRGQ---GKKNIY---------------LANNKITMLRDLD---- 139

Query: 399 GTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCR 458
                             +Q L+L+   ++ +                  L  + L+   
Sbjct: 140 ------------EGCRSRVQYLDLKLNEIDTVNFAE-------LAASSDTLEHLNLQYNF 180

Query: 459 GKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL 518
             D+   V    LK L++            KL+ +     S       + ++++ R   L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSS---------NKLAFMGPEFQS----AAGVTWISL-RNNKL 226

Query: 519 KSVYPNPQPFPKLKKIQ 535
             +    +     + ++
Sbjct: 227 VLI---EKALRFSQNLE 240

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           K + L+ N +  L      + P L  L L    I+ I DG +QSLS L  L L GN P  
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 89

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           +L  G  SGL SL  L    T++  L       L+ L+ LN+ +    S    +  S  +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 325 KLEVLRLCGC 334
            LE L L   
Sbjct: 150 NLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 16/140 (11%)

Query: 209 KRISLTANGIGSLSEIP--TCPRLVTLLLDGNRIEEI-TDGFFQSLSTLRVLSLRGNFPP 265
           +++      + SL   P      L  L +  N I+      +F +L+ L  L L  N   
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KI 161

Query: 266 STLPSGI-SGLVSL----HHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLI 320
            ++       L  +      LDLS   +  +        +L+ L LD    L  +P  + 
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIF 220

Query: 321 SCFSKLEVLRL------CGC 334
              + L+ + L      C C
Sbjct: 221 DRLTSLQKIWLHTNPWDCSC 240

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 209 KRISLTANGIGSL-SEIPT-CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
             + LT N I SL     +    L  L+     +  + +     L TL+ L++  N   S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLD---YAFHLSIIPHQLIS 321
                  S L +L HLDLSS  I  +    L+ L ++  LNL        ++ I      
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-- 196

Query: 322 CFSKLEVLRL 331
            F ++ +  L
Sbjct: 197 -FKEIRLKEL 205

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 220 SLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
            ++EIP+      + L     ++  I  G F     L  + +  N     + + + S L 
Sbjct: 20  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 277 SLHHLDLS-STDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333
            LH + +  + ++  +  E  + L  L+YL +     +  +P        +  +L +  
Sbjct: 80  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQD 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 220 SLSEIPT-----CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-IS 273
           +L  I        P L  LL+    I+ + D          +L ++ N    T+      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 274 GLVS-LHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           GL      L L+   I  +        +L  LNL    +L  +P+ +    S   +L +
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 211 ISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           + L  NGI  +              L D N +EE+ +  F   S   +L +       +L
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL 217

Query: 269 PSGI-SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFH 311
           PS     L  L      +  +  LP  L+ L  L   +L Y  H
Sbjct: 218 PSYGLENLKKLRARSTYN--LKKLPT-LEKLVALMEASLTYPSH 258

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 223 EIPT--CPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH 279
            IP      L  L L  N+   EI D    +  TL  L L GN     +P        L 
Sbjct: 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 280 HLDLSSTDITG-LPQE-LKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGC 334
            L LSS + +G LP + L  +  L+ L+L +    S  +P  L +  + L  L L   
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 222 SEIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280
           S + +  +L  L L  N +E EI       + TL  L L  N     +PSG+S   +L+ 
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 281 LDLSSTDITG-LPQELKALEKLRYLNLDY-AFHLSIIPHQLISCFSKLEVLRL 331
           + LS+  +TG +P+ +  LE L  L L   +F    IP +L  C   L  L L
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELGDC-RSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIE-EITDGF--FQSLSTLRVLSLRGNFPPSTLPSGI 272
           +  G +S       L  L L  N I      G+        L+ L++ GN     +   +
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V 196

Query: 273 SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRL 331
           S  V+L  LD+SS + +     L     L++L++     LS      + +C ++L++L +
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTC-TELKLLNI 254

Query: 332 CGCGRFGVI 340
                 G I
Sbjct: 255 SSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 28/153 (18%)

Query: 212 SLTANGIGSLSEIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPS 270
           S++   +        C  L  L + GN+I  ++          L  L +  N   + +P 
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF 218

Query: 271 GISGLVSLHHLDLSSTDITG-LPQELKALEKLRYLNLDY--------AFHLS-------- 313
            +    +L HLD+S   ++G   + +    +L+ LN+             L         
Sbjct: 219 -LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277

Query: 314 ------IIPHQLISCFSKLEVLRLCGCGRFGVI 340
                  IP  L      L  L L G   +G +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 34/188 (18%)

Query: 249 QSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY 308
             ++++ + S   N   S + S +  L  L  L LS++ I G     K    L  L+L  
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 309 A-FHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL-- 365
                 +     +   S L+ L +         K                +L  L+ L  
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-----------VSGGLKLNSLEVLDL 158

Query: 366 --NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH----LAYMENLQE 419
             N +S +      +       +L  +  S             N +     ++   NL+ 
Sbjct: 159 SANSISGANVVGWVLSDGC--GELKHLAIS------------GNKISGDVDVSRCVNLEF 204

Query: 420 LELESCNL 427
           L++ S N 
Sbjct: 205 LDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 7e-09
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 211 ISLTANGI-GSLSEIPTC----PRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFP 264
           I L++  +    S + +       L +L L  + I   ++   F+  ++L  L L  N  
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSL 112

Query: 265 PSTLPSG--ISGLVSLHHLDLSSTDITGL--PQELKALEKLRYLNLDY-AFHLSIIPH-Q 318
              + +   +     L  L++SS  +           L  L  L+L   +   + +    
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 319 LISCFSKLEVLRLCGCGRFGVI 340
           L     +L+ L + G    G +
Sbjct: 173 LSDGCGELKHLAISGNKISGDV 194

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 33/141 (23%)

Query: 223 EIPT-----CPRLVTLLLDGNRIE-EITDGFFQS-LSTLRVLSLRGNFPPSTLPSGISGL 275
           E+P         L+TL L  N     I     Q+  +TL+ L L+ N     +P  +S  
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 276 VSLHHLDLSSTDITG-LPQELKALEKLRYLNLDY------------------AFHLS--- 313
             L  L LS   ++G +P  L +L KLR L L                       L    
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 314 ---IIPHQLISCFSKLEVLRL 331
               IP  L +C + L  + L
Sbjct: 478 LTGEIPSGLSNC-TNLNWISL 497

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 219 GSL-SEIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLV 276
           G + S +  C  L  + L  NR+  EI   +   L  L +L L  N     +P+ +    
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 277 SLHHLDLSSTDITG-LPQELKALEKLRYLNL 306
           SL  LDL++    G +P  +         N 
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 222 SEIPTCPRLVTLLLDGNRIE---EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSL 278
             I            GN +E     ++     LST    ++                 S+
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 279 HHLDLSSTDITG-LPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVL 329
             LD+S   ++G +P+E+ ++  L  LNL +   +S  IP ++      L +L
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDL-RGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 222 SEIPTCPRLVTLLLDGNRI-----EEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLV 276
                   ++ L +  N +     +EI       +  L +L+L  N    ++P  +  L 
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGS-----MPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 277 SLHHLDLSSTDITG-LPQELKALEKLRYLNLDY 308
            L+ LDLSS  + G +PQ + AL  L  ++L  
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           + I+   N +  L E+   P L  +  D N ++++         +L  +    N     L
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNN-ILEEL 230

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
           P  +  L  L  +   +  +  LP    +LE L   +     +L+ +P  L    + L+V
Sbjct: 231 PE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPE-LPQSLTFLDV 284

Query: 329 LRL 331
              
Sbjct: 285 SEN 287

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 24/137 (17%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           + I    N +  L E+   P L T+  D N ++ + D       +L  L++R N   + L
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDN-YLTDL 272

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKAL--------------EKLRYLNLDYAFHLSI 314
           P     L  L   +   + ++ LP  L  L                L  LN+     L  
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIE 331

Query: 315 IPHQLISCFSKLEVLRL 331
           +P    +   +LE L  
Sbjct: 332 LP----ALPPRLERLIA 344

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)

Query: 220 SLSEIP-TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FPPS-------- 266
            LS +P   P L +L+   N + E+ +    SL +L V +         PP         
Sbjct: 82  GLSSLPELPPHLESLVASCNSLTELPELPQ-SLKSLLVDNNNLKALSDLPPLLEYLGVSN 140

Query: 267 ----TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISC 322
                LP  +     L  +D+ +  +  LP        L ++       L  +P   +  
Sbjct: 141 NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNN-QLEELPE--LQN 193

Query: 323 FSKLEVLRL 331
              L  +  
Sbjct: 194 LPFLTAIYA 202

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%)

Query: 220 SLSEIPTCP--RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVS 277
           ++S +  C   +   L L+   +  + +        L  L    N   + LP     L S
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSL-TELPELPQSLKS 115

Query: 278 LHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGC 334
           L   + +   ++ LP        L YL +     L  +P   +   S L+++ +   
Sbjct: 116 LLVDNNNLKALSDLP------PLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNN 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 27/128 (21%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIP-TCPRLVTLLLDGNRIEEITDGFFQSLST 253
           ++      +     + ++++ N    L E+P   PRL  L+   N + E+ +        
Sbjct: 308 EIRSLC--DLPPSLEELNVSNN---KLIELPALPPRLERLIASFNHLAEVPE----LPQN 358

Query: 254 LRVLSLRGNFPPSTLPSGISGLVSLH----------------HLDLSSTDITGLPQELKA 297
           L+ L +  N P    P     +  L                  L + +  +   P   ++
Sbjct: 359 LKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417

Query: 298 LEKLRYLN 305
           +E LR  +
Sbjct: 418 VEDLRMNS 425

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 221 LSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280
           L E P  P  V  L   + + E+ +        L+ L +  N P    P     +  L  
Sbjct: 369 LREFPDIPESVEDLRMNSHLAEVPE----LPQNLKQLHVETN-PLREFPDIPESVEDLRM 423

Query: 281 LDLSSTDITGLPQELKALEKLRYLNLD 307
                 D      E    +KL     +
Sbjct: 424 NSERVVDPYEFAHET--TDKLEDDVFE 448

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            +T+A    E     +I    + I S+  I   P +  L L+GN++ +I      +L  L
Sbjct: 35  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNL 92

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
             L L  N     L S +  L  L  L L    I+ +   L  L +L  L L     ++ 
Sbjct: 93  GWLFLDEN-KVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITD 148

Query: 315 IPHQLISCFSKLEVLRL 331
           I    +S  +KL+ L L
Sbjct: 149 ITV--LSRLTKLDTLSL 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 55/303 (18%), Positives = 100/303 (33%), Gaps = 76/303 (25%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            + +    + +    + +L    +           +  ++ + + I+ +     Q L  +
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNV 70

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
             L L GN         ++ L +L  L L    +  L   LK L+KL+ L+L++   +S 
Sbjct: 71  TKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHN-GISD 126

Query: 315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374
           I    +    +LE L L              N + D     +  L  L  L+ LS     
Sbjct: 127 ING--LVHLPQLESLYL------------GNNKITD-----ITVLSRLTKLDTLS----- 162

Query: 375 SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS 434
                  L+  ++  I                    LA +  LQ L L S N     I  
Sbjct: 163 -------LEDNQISDIVP------------------LAGLTKLQNLYL-SKN----HISD 192

Query: 435 TEEVKKLFRNGFRNLNTVVLRSCRGKDLTW-----LVFVQNLKQLNMQGFTMEEIISVEK 489
              +  L     +NL+ + L S    +        LV    +K  +        +++ E 
Sbjct: 193 LRALAGL-----KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS------LVTPEI 241

Query: 490 LSD 492
           +SD
Sbjct: 242 ISD 244

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 44/263 (16%), Positives = 80/263 (30%), Gaps = 65/263 (24%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGL 275
             I  +         +   L    + +        L+++  +    +    ++  GI  L
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSD-IKSV-QGIQYL 67

Query: 276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335
            ++  L L+   +T +   L  L+ L +L LD    +  +    +    KL+ L L    
Sbjct: 68  PNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSL---- 119

Query: 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVW 395
                   E N + D     +  L+ L  L  L             L   K+  IT    
Sbjct: 120 --------EHNGISD-----INGLVHLPQLESLY------------LGNNKITDIT---- 150

Query: 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455
                          L+ +  L  L LE   + ++       +  L       L  + L 
Sbjct: 151 --------------VLSRLTKLDTLSLEDNQISDI-----VPLAGL-----TKLQNLYLS 186

Query: 456 SCRGKDLTWLVFVQNLKQLNMQG 478
                DL  L  ++NL  L +  
Sbjct: 187 KNHISDLRALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 46/285 (16%), Positives = 92/285 (32%), Gaps = 79/285 (27%)

Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
           P     +     I++I      + +     +L+      T     + L S+  +  +++D
Sbjct: 2   PLGSETITVPTPIKQIFS--DDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSD 57

Query: 288 ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV 347
           I  + Q ++ L  +  L L+      I P   ++    L  L L              N 
Sbjct: 58  IKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDE------------NK 101

Query: 348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN 407
           + D     +  L  LK L  LS            L++  +  I                 
Sbjct: 102 VKD-----LSSLKDLKKLKSLS------------LEHNGISDIN---------------- 128

Query: 408 VLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVF 467
              L ++  L+ L L +  + ++       + +L       L+T+ L   +  D+  L  
Sbjct: 129 --GLVHLPQLESLYLGNNKITDI-----TVLSRL-----TKLDTLSLEDNQISDIVPLAG 176

Query: 468 VQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTM 512
           +  L+ L          +S   +SD+  + G        L+ L +
Sbjct: 177 LTKLQNLY---------LSKNHISDLRALAG-----LKNLDVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             +SL  N I  +  +    +L  L L  N I ++       L  L VL L      +  
Sbjct: 159 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK 325
            +  S LV  + +  +   +   P+ +   +   Y   +  +HL    +++   F +
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVT-PEIIS--DDGDYEKPNVKWHLPEFTNEVSFIFYQ 270

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 40/253 (15%), Positives = 78/253 (30%), Gaps = 64/253 (25%)

Query: 270 SGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVL 329
                       +L    +T        L  +  +  + +  +  +    I     +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKL 73

Query: 330 RLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVS 389
            L             GN L D     +K L  LK+L  L            FL   K+  
Sbjct: 74  FL------------NGNKLTD-----IKPLANLKNLGWL------------FLDENKVKD 104

Query: 390 ITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNL 449
           ++                   L  ++ L+ L LE   + ++       +  L       L
Sbjct: 105 LS------------------SLKDLKKLKSLSLEHNGISDI-----NGLVHL-----PQL 136

Query: 450 NTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEY 509
            ++ L + +  D+T L  +  L  L+++   + +I+ +  L+ +  +  S  N    L  
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS-KNHISDLRA 195

Query: 510 LTMWRGTNLKSVY 522
           L      NL  + 
Sbjct: 196 LAGL--KNLDVLE 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 12/123 (9%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             +    + I  ++ I     L  L+   N I  +        + L  L+   N   + L
Sbjct: 45  TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNL 100

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              ++ L  L +L+  +  +T L   +     L YLN      L+ I    +S  ++L  
Sbjct: 101 D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTE 152

Query: 329 LRL 331
           L  
Sbjct: 153 LDC 155

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             +    N   +  ++    +L TL    N+I E+          L  L+   N   + L
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN-NITKL 206

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              ++  + L  LD SS  +T +   +  L +L Y +      L+ +    +S  SKL  
Sbjct: 207 D--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN-PLTELD---VSTLSKLTT 258

Query: 329 LRL 331
           L  
Sbjct: 259 LHC 261

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 35/273 (12%), Positives = 81/273 (29%), Gaps = 43/273 (15%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             ++  +N + +L  +    +L  L  D N++ ++          L  L+   N   + +
Sbjct: 88  TYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN-TLTEI 142

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              +S    L  LD           ++    +L  L+  +   ++ +    +S    L  
Sbjct: 143 D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNR 195

Query: 329 LRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV 388
           L          I   +           + + + L  L+  S +  + + V       +L 
Sbjct: 196 LNCDTNN----ITKLD-----------LNQNIQLTFLD-CSSNKLTEIDVTPL---TQL- 235

Query: 389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN 448
                        T    + L       L  L     +L E+ +    ++      G R 
Sbjct: 236 ---TYFDCSVNPLTELDVSTL-----SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 449 LNTVVLRSCRGKDLTWLVFVQN-LKQLNMQGFT 480
           +  + +       L  L      + +L++    
Sbjct: 288 IKELDVTHN--TQLYLLDCQAAGITELDLSQNP 318

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 9/99 (9%)

Query: 211 ISLTANGIGSLSEIP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           I   A G   + E+      +L  L      I E+          L  L L      + L
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNT-ELTEL 333

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
              +S    L  L   +  I      +  +  L      
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEA 369

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
             ++++ N I  L    I +  +L  L++  NRI+ +    F+    L  L L  N    
Sbjct: 24  TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLV 82

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
            +       V+L HLDLS      LP   E   + +L++L L    HL       I+  +
Sbjct: 83  KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHLN 139

Query: 325 KLEVL-----RLCGCGRFGVIKGKEGNVL------------CDGAEPLMKELLGLKHLNV 367
             +VL               ++      L                       L L ++  
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 368 LSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL 427
           +      S  +    K      ++        T       +L L +   +    + +  L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 428 EEMKI-----DSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTME 482
           +          S   +K L  +   +      +S   +  + +    N+K   + G  M 
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM----NIKNFTVSGTRMV 315

Query: 483 EIISVEKLSD----------ISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLK 532
            ++   K+S           +++ +         LE L + +   LK +    +   ++K
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL-QMNQLKELSKIAEMTTQMK 374

Query: 533 KIQAFHCRQ 541
            +Q     Q
Sbjct: 375 SLQQLDISQ 383

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 11/130 (8%)

Query: 212 SLTANGIGSLSEIP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
           + T +G   +  +        + L    N + +        L+ L  L L+ N     L 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELS 364

Query: 270 SGIS---GLVSLHHLDLSSTDITGLPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
                   + SL  LD+S   ++   ++      + L  LN+        I   L     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PP 421

Query: 325 KLEVLRLCGC 334
           +++VL L   
Sbjct: 422 RIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 3/105 (2%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
           +       +    +       +S    L    N    T+      L  L  L L    + 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 290 GLPQELKA---LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
            L +  +    ++ L+ L++              S    L  L +
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
           L    +  +         ++  S + + +   +          S +    HLD S+  +T
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 290 GLP-QELKALEKLRYLNLDYAFHLSIIPHQ--LISCFSKLEVLRLCGCGRFGVIKGKEGN 346
               +    L +L  L L     L  +     + +    L+ L +        +   E  
Sbjct: 338 DTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS----VSYDEKK 392

Query: 347 VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPF 406
             C            L  LN +S +  +    +     P++    + + +        P 
Sbjct: 393 GDCSW-------TKSLLSLN-MSSNILTDTIFRCLP--PRI----KVLDLHSNKIKSIPK 438

Query: 407 NVLHLAYMENLQELELESCNL 427
            V+ L   E LQEL + S  L
Sbjct: 439 QVVKL---EALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 27/126 (21%)

Query: 209 KRISLTANGIGSLSEIPTC----PRLVTLLLDGNRIEEI-TDGFFQSLSTLRVLSLRGN- 262
           + + L  N +  LS+I         L  L +  N +      G      +L  L++  N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 263 --------FPP------------STLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKL 301
                    PP             ++P  +  L +L  L+++S  +  +P      L  L
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 302 RYLNLD 307
           + + L 
Sbjct: 471 QKIWLH 476

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPT-CPRLVTLLLDGNRIEEITDGFFQSLST 253
           +LT+            + L+ N + SL  +    P L  L +  NR+  +  G  + L  
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 254 LRVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFH 311
           L+ L L+GN    TLP G+ +    L  L L++ ++T LP  L   LE L  L L     
Sbjct: 126 LQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-S 183

Query: 312 LSIIPHQLISCF--SKLEVLRL------CGC 334
           L  IP      F    L    L      C C
Sbjct: 184 LYTIPKGF---FGSHLLPFAFLHGNPWLCNC 211

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 213 LTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG 271
                + +L  ++P       L L  N +   +       + L  L+L      + L   
Sbjct: 17  CDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD 73

Query: 272 ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
              L  L  LDLS   +  LP   + L  L  L++ +   L+ +P   +    +L+ L L
Sbjct: 74  -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYL 131

Query: 332 CG 333
            G
Sbjct: 132 KG 133

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 25/144 (17%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN----FP 264
           +  +   + I SL+ +     L  L L  N+I +++    + L+ L  LS+  N      
Sbjct: 44  QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLN 101

Query: 265 PSTLP---------------SGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYA 309
                                 +  L +L  L + +  +  +   L  L KL  L+L   
Sbjct: 102 GIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160

Query: 310 FHLSIIPHQLISCFSKLEVLRLCG 333
             ++      ++   K+  + L G
Sbjct: 161 -EITNTGG--LTRLKKVNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
            + +L    +  L        +     D + I+ +     Q  + L+ L L  N    + 
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN--QISD 77

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
            S +  L  L  L ++   +  L   + +   L  L LD    L       +     LE+
Sbjct: 78  LSPLKDLTKLEELSVNRNRLKNLN-GIPSA-CLSRLFLDNN-ELRDTDS--LIHLKNLEI 132

Query: 329 LRL 331
           L +
Sbjct: 133 LSI 135

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 48/260 (18%), Positives = 87/260 (33%), Gaps = 67/260 (25%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGL 275
             I  +   P     V   L    + ++     + LS ++  +   +   S   +G+   
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--AGMQFF 62

Query: 276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335
            +L  L LS   I+ L   LK L KL  L+++    L  +        + L  L L    
Sbjct: 63  TNLKELHLSHNQISDLS-PLKDLTKLEELSVNRN-RLKNLNG---IPSACLSRLFL---- 113

Query: 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVW 395
                   + N L D        L+ LK+L +LS            ++  KL SI     
Sbjct: 114 --------DNNELRD-----TDSLIHLKNLEILS------------IRNNKLKSIV---- 144

Query: 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455
                          L ++  L+ L     +L   +I +T  + +L     + +N + L 
Sbjct: 145 --------------MLGFLSKLEVL-----DLHGNEITNTGGLTRL-----KKVNWIDLT 180

Query: 456 SCRGKDLTWLVFVQNLKQLN 475
             +  +   + +   L   N
Sbjct: 181 GQKCVNEP-VKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 62/227 (27%)

Query: 270 SGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVL 329
               GL +    +L    +T L    K L  ++  N D +   S+     +  F+ L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKEL 68

Query: 330 RLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVS 389
            L              N + D     +  L  L  L  LS            +   +L +
Sbjct: 69  HL------------SHNQISD-----LSPLKDLTKLEELS------------VNRNRLKN 99

Query: 390 ITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNL 449
           +                          +    L    L+  ++  T+ +  L     +NL
Sbjct: 100 L------------------------NGIPSACLSRLFLDNNELRDTDSLIHL-----KNL 130

Query: 450 NTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEV 496
             + +R+ + K +  L F+  L+ L++ G  +     + +L  ++ +
Sbjct: 131 EILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 5e-11
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 204 EWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263
           E+   + + L    +  L  +     +  L L  NR+  +      +L  L VL    N 
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN- 496

Query: 264 PPSTLPSGISGLVSLHHLDLSSTDITGLP--QELKALEKLRYLNL 306
               +  G++ L  L  L L +  +      Q L +  +L  LNL
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITD-GFFQSLSTLRVLSLRGN 262
           + +  + N + ++  +   PRL  LLL  NR+++        S   L +L+L+GN
Sbjct: 489 EVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
           RVL L       T+   +  L+ + HLDLS   +  LP  L AL  L  L       L  
Sbjct: 444 RVLHLAHKD--LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALEN 500

Query: 315 IPHQLISCFSKLEVLRLCG 333
           +    ++   +L+ L LC 
Sbjct: 501 VDG--VANLPRLQELLLCN 517

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 8/125 (6%)

Query: 213 LTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI 272
           LTA  I   ++     R   L L G +I  I +    +L     +    N        G 
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGF 60

Query: 273 SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAF--HLSIIPHQLISCFSKLEVL 329
             L  L  L +++  I  + + L +AL  L  L L       L  +    ++    L  L
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYL 118

Query: 330 RLCGC 334
            +   
Sbjct: 119 CILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 22/98 (22%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
             I  + N I  L   P   RL TLL++ NRI  I +G  Q+L  L  L L  N      
Sbjct: 45  DAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS----- 99

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
                 LV L  LD            L +L+ L YL +
Sbjct: 100 ------LVELGDLD-----------PLASLKSLTYLCI 120

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 209 KRISLTANGIGSLS--EIPTCPRLVTLLLDGNRI-------EEITDGFFQSLSTLRVLSL 259
           K +S+      + S  ++   P L TL L  N           +    F +L  L + + 
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 260 RGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA--LEKLRYLNLDYAFHLSIIPH 317
               P     +  +  V L  LDLS   +             +L  LNL +   L  +P 
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK 270

Query: 318 QLISCFSKLEVLRL 331
            L    +KL VL L
Sbjct: 271 GL---PAKLSVLDL 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 196 LTEAPKVEEWEGAKRISLTANGIGSLSEIP-----TCPRLVTLLLDGNRIEEI-TDGFFQ 249
           L  A    ++   + ++L   G+ + S +         +L  L L  N + +        
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 250 SLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY 308
             S L  L+L        +P G+     L  LDLS   +   P   + L ++  L+L  
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 211 ISLTANGIGSLSEIPTCPRLVTLLLDGNRI----EEITDGFFQSLSTLRVLSLRGNFPPS 266
           + +T      L E  T P L  L L           + +        L+VLS+      +
Sbjct: 105 LEVTGTAPPPLLEA-TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 267 TLPSGISGLVSLHHLDLSSTDITG--------LPQELKALEKLRYLNLDYAFHLSIIPHQ 318
                +    +L  LDLS     G         P +   L+ L   N       S +   
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSA 222

Query: 319 LISCFSKLEVLRL 331
           L +   +L+ L L
Sbjct: 223 LAAARVQLQGLDL 235

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF--PPS 266
           + +S    G+ S++ +P   +L  L L  NR+    +   +    L  L+L GN     S
Sbjct: 45  EFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLP----QELKALEKLRYL 304
           T+   +  L +L  LDL + ++T L        K L +L YL
Sbjct: 105 TI-EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 19/134 (14%)

Query: 237 GNRIEEITDGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL 295
           G RI        ++ S ++ L L  +      L         L  L   +  +T +   L
Sbjct: 4   GRRIHLELRN--RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-L 60

Query: 296 KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPL 355
             L KL+ L L     +S     L      L  L L             GN + D +   
Sbjct: 61  PKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNL------------SGNKIKDLST-- 105

Query: 356 MKELLGLKHLNVLS 369
           ++ L  L++L  L 
Sbjct: 106 IEPLKKLENLKSLD 119

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 29/279 (10%)

Query: 220 SLSEIPT-CPRLVTLL-LDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
           +L+ +P   P     L L  N I E+       LS LRVL L  N    +L   +     
Sbjct: 42  NLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQ 100

Query: 277 SLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG--- 333
            L +LD+S   +  +      +  LR+L+L +     +   +     +KL  L L     
Sbjct: 101 DLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 334 -CGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQ 392
                  +              L   LL L   ++      S       + +      + 
Sbjct: 159 RQLDLLPVAHLH----------LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS- 207

Query: 393 SVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTV 452
                   ++      ++      L  ++L   N + +    +E  +          +  
Sbjct: 208 -------LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 453 VLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS 491
               C  K      + + ++ LN+   T+ E I  E+ +
Sbjct: 261 TTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFT 298

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 205 WEGAKRISLTANGIGSLSEIPTCP-RLVTLLLDGNRIEEIT----DGFFQSLSTLRVLSL 259
            +  + + L  NG+ +  ++      + +L      +  +     D       ++ VL+L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 260 RGNFPPSTLPSGI--SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPH 317
             N     L   +       +  LDL +  I  +P+++  L+ L+ LN+     L  +P 
Sbjct: 436 SSN----MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPD 490

Query: 318 QLISCFSKLEVLRL------CGC 334
            +    + L+ + L      C C
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTC 513

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
           +   +L  +    I      S S+   L+   N    ++  G S L  L  L L    + 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 290 GLPQ---ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
              +     K +  L  L++      S    +  +    + VL L
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
           L+   +         +  +   + + +  L  +  P           S   L+ +    T
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 290 GLP-QELKALEKLRYLNLDY 308
               Q    L++L+ L L  
Sbjct: 367 DSVFQGCSTLKRLQTLILQR 386

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           + I+   N +  L E+PT   L  L +  N++  + +       +L  L +  N    +L
Sbjct: 143 EYINADNNQLTMLPELPT--SLEVLSVRNNQLTFLPE----LPESLEALDVSTNLL-ESL 195

Query: 269 PSGISGLVSL----HHLDLSSTDITGLPQELKALEKLRYLNLD 307
           P+                     IT +P+ + +L+    + L+
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 229 RLVTLLLDGNRIEEITDGFFQS-LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
           +     L G    E      +  ++    L L      S+LP  +     +  L+++   
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRL-NLSSLPDNL--PPQITVLEITQNA 91

Query: 288 ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
           +  LP+   +LE L   +      LS +P       + L+ L +
Sbjct: 92  LISLPELPASLEYLDACDN----RLSTLPELP----ASLKHLDV 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF--PPS 266
           + +SL   G+ S+S +P  P+L  L L  NRI    D   + L  L  L+L GN     S
Sbjct: 52  EFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

Query: 267 TLPSGISGLVSLHHLDLSSTDITGLP----QELKALEKLRYL 304
           TL   +  L  L  LDL + ++T L        K L +L YL
Sbjct: 112 TL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 209 KRISLTANGIGSLSE-IPTC-PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           + + L  N + +L   I      L TL +  N+++ +  G F  L  L  L L  N    
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLK 122

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           +LP  +   L  L +L L   ++  LP+ +   L  L+ L L     L  +P       +
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLT 181

Query: 325 KLEVLRL 331
           +L+ L+L
Sbjct: 182 ELKTLKL 188

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 12/136 (8%)

Query: 209 KRISLTANGIGSL-SEIPTCP-RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
           + + +T N + +L   +      L  L LD N+++ +    F SL+ L  LSL  N    
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQ 146

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           +LP G+   L SL  L L +  +  +P+     L +L+ L LD    L  +P        
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLE 205

Query: 325 KLEVLRL------CGC 334
           KL++L+L      C C
Sbjct: 206 KLKMLQLQENPWDCTC 221

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 222 SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHH 280
           S IP       L L  N++  +    F  L+ LR+L L  N    TLP+GI   L +L  
Sbjct: 33  SNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLET 89

Query: 281 LDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333
           L ++   +  LP  +   L  L  L LD    L  +P ++    +KL  L L  
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           K ++L+ N I  +S +     L  L L  N I++I +       TL  L +  N   ++L
Sbjct: 51  KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQ-IASL 108

Query: 269 PSGISGLVSLHHLDLSSTDITGLP--QELKALEKLRYLNLD 307
            SGI  LV+L  L +S+  IT      +L AL+KL  L L 
Sbjct: 109 -SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 222 SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL 281
           S + T    V L      IE++ D    +L   + L+L  N       S +SG+ +L  L
Sbjct: 19  SVVATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRIL 75

Query: 282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
            L    I  +       + L  L + Y   ++ +    I     L VL +
Sbjct: 76  SLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVLYM 122

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITD-GFFQSLSTLRVLSLRGN 262
           + + ++ N I SLS I     L  L +  N+I    +     +L  L  L L GN
Sbjct: 96  EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
            ++    N + SL  +P+   L  L++ GNR+  +        S L+ L + GN   ++L
Sbjct: 204 YKLWAYNNRLTSLPALPS--GLKELIVSGNRLTSLPV----LPSELKELMVSGNRL-TSL 256

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
           P   S    L  L +    +T LP+ L  L     +NL+    LS    Q +   +    
Sbjct: 257 PMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPG 312

Query: 329 L 329
            
Sbjct: 313 Y 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 27/140 (19%)

Query: 207 GAKRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
           G   +++  +G+ +L   +P    + TL++  N +  +          LR L + GN   
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QL 93

Query: 266 STLPSGISGLVSLHHLDLSSTDITGLPQELKALE--------------KLRYLNLDYAFH 311
           ++LP    GL+ L       T +  LP  L  L                L+ L++     
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD-NQ 152

Query: 312 LSIIPHQLISCFSKLEVLRL 331
           L+ +P    +  S+L  L  
Sbjct: 153 LASLP----ALPSELCKLWA 168

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
            ++ +  N + SL  +P  P L  L +  N++  +     +    L  L    N   ++L
Sbjct: 124 CKLWIFGNQLTSLPVLP--PGLQELSVSDNQLASLPALPSE----LCKLWAYNN-QLTSL 176

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
           P   S    L  L +S   +  LP     L KL   N      L+ +P       S L+ 
Sbjct: 177 PMLPS---GLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALP----SGLKE 225

Query: 329 LRL 331
           L +
Sbjct: 226 LIV 228

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNR-IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI- 272
              + SL  +P    L  L ++  + ++ +     + L  LR L++  +     +     
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAF 76

Query: 273 SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
                L  L+LS   +  L  +      L+ L L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285
             L  L +  + +  +    F     L  L+L  N    +L       +SL  L LS 
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG 112

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 222 SEIPTCPRLVTLLLDGNRIE---EITDGFFQSLSTLRVLSLRG-NFPPSTLPSGISGLVS 277
                  R+  L L G  +     I      +L  L  L + G N     +P  I+ L  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 278 LHHLDLSSTDITG-LPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRL 331
           LH+L ++ T+++G +P  L  ++ L  L+  Y   LS  +P  + S    L  +  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 218 IGSLSEIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLV 276
             +L+       L  + L  N +E + +  F  S    + + L  N     L   +    
Sbjct: 194 FANLN-------LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSK 244

Query: 277 SLHHLDLSSTDITG-LPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCG- 333
           +L+ LDL +  I G LPQ L  L+ L  LN+ +  +L   IP        + +V      
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQGGN--LQRFDVSAYANN 301

Query: 334 ---CG 335
              CG
Sbjct: 302 KCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 6e-08
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 222 SEIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280
             I    +L  L +    +   I D F   + TL  L    N    TLP  IS L +L  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 281 LDLSSTDITG-LPQELKALEKL-RYLNLDYAFHLS-IIPHQLISCFSKLEVLRL 331
           +      I+G +P    +  KL   + +     L+  IP    +    L  + L
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANL--NLAFVDL 204

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 210 RISLTANGI-GSL-SEIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPS 266
            +  + N + G+L   I + P LV +  DGNRI   I D +         +++  N    
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 267 TLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLRYLNLDY 308
            +P   + L +L  +DLS   + G       + +  + ++L  
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 45/286 (15%), Positives = 86/286 (30%), Gaps = 38/286 (13%)

Query: 227 CPRLVTLLLDGNRIEEITDGF------FQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280
            P+L  L   G   E   D +            LR LS   +  P+ LP+  S    L  
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 281 LDLSSTDIT--GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338
           L+LS   +    L + L    KL+ L +      + +   L S    L  LR+     F 
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV-LASTCKDLRELRVFPSEPF- 351

Query: 339 VIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS--LAVQKFLKYPKLVSITQSVWV 396
            +      +   G   +      L+ +        ++  + + +         +      
Sbjct: 352 -VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410

Query: 397 ECGTYTRPPFN--VLHLA-YMENLQELELESC--------------NLEEMKIDST---- 435
                T  P +     +  + ++L+ L L                  +E + +       
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470

Query: 436 EEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFV---QNLKQLNMQG 478
             +  +   G  +L  + +R C   D   L      + ++ L M  
Sbjct: 471 LGMHHVLS-GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 15/135 (11%)

Query: 213 LTANGIGSLSEIPTCPRLVTLLLDG-------NRIEEITDGFFQSL----STLRVLSLRG 261
           +T   + +++     P +    L             E  D  F ++      LR LSL G
Sbjct: 384 MTNAALITIARN--RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441

Query: 262 NFPPSTLPSGISGLVSLHHLDLSSTDIT--GLPQELKALEKLRYLNLDYAFHLSIIPHQL 319
                      +    +  L ++    +  G+   L   + LR L +             
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501

Query: 320 ISCFSKLEVLRLCGC 334
            S    +  L +  C
Sbjct: 502 ASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 37/167 (22%), Positives = 51/167 (30%), Gaps = 23/167 (13%)

Query: 213 LTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRG------NFPPS 266
           ++ + +  L     CP L +L L+     E      Q    L  L   G          S
Sbjct: 198 VSFSALERLVT--RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 267 TLPSGISGLVSLHHLDLSSTDIT--GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
            L   +SG   L  L     D     LP       +L  LNL YA   S    +L+    
Sbjct: 256 GLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

Query: 325 KLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS 371
           KL+ L +               +   G E L      L+ L V    
Sbjct: 315 KLQRLWVLDY------------IEDAGLEVLASTCKDLRELRVFPSE 349

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 40/282 (14%), Positives = 87/282 (30%), Gaps = 64/282 (22%)

Query: 212 SLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLST----LRVLSLRGNFPPST 267
           ++ +  +  L  +  CP+L  L +       I D   + L++    LR L +  + P   
Sbjct: 300 TVQSYDLVKL--LCQCPKLQRLWVLDY----IEDAGLEVLASTCKDLRELRVFPSEPFVM 353

Query: 268 LPSG----------ISGLVSLHHLDLSSTDIT-----GLPQELKALEKLRYLNLDYAFHL 312
            P+             G   L  +      +T      + +    + + R   ++     
Sbjct: 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413

Query: 313 SIIPH-------QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD-GAEPLMKELLGLKH 364
            +           ++     L  L L G              L D   E +      ++ 
Sbjct: 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSGL-------------LTDKVFEYIGTYAKKMEM 460

Query: 365 LNVLSWSFGSSLAVQKFLKY-PKL--VSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 421
           L+ ++++  S L +   L     L  + I    + +          + + + +E ++ L 
Sbjct: 461 LS-VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL-------LANASKLETMRSLW 512

Query: 422 LESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLT 463
           + SC++       +    KL       LN  V+      D  
Sbjct: 513 MSSCSV-------SFGACKLLGQKMPKLNVEVIDERGAPDSR 547

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            +T+A    E     +I    + I S+  I   P +  L L GN++ +I     + L+ L
Sbjct: 30  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNL 87

Query: 255 RVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDY 308
             L L GN    +LP+G+   L +L  L L    +  LP  +   L  L YLNL +
Sbjct: 88  TYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
            +     ++     + ++L  N +  +S +     L  L+L GN+++ + +G F  L+ L
Sbjct: 52  DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 255 RVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDY 308
           + L L  N    +LP G+   L +L +L+L+   +  LP+ +   L  L  L+L Y
Sbjct: 112 KELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 209 KRISLTANGIGSLS----EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP 264
             + LT N + SL     +  T   L  L+L  N+++ + DG F  L+ L  L+L  N  
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLT--NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 265 PSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISC 322
            S LP G+   L +L  LDLS   +  LP+ +   L +L+ L L     L  +P  +   
Sbjct: 146 QS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDR 203

Query: 323 FSKLEVLRL------CGCGRF-----------GVIKGKEGNVLCDGAE 353
            + L+ + L      C C              GV++   G+V  D A+
Sbjct: 204 LTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAK 251

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 213 LTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFF----QSLSTLRVLSLRGNFPPSTL 268
           ++   + +++    C  LV++ +     E +    F     +L      SL  +      
Sbjct: 207 ISPKDLETIAR--NCRSLVSVKV--GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262

Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
              +     L  L LS      +P       ++R L+L YA   +     LI     LEV
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 329 LRLCGC 334
           L     
Sbjct: 323 LETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 37/270 (13%), Positives = 81/270 (30%), Gaps = 57/270 (21%)

Query: 219 GSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLST----LRVLSLRGNFPPSTLPSGIS- 273
              + I  CP L  L         I D   + L+     L+ L +        +      
Sbjct: 309 DHCTLIQKCPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

Query: 274 -----------GLVSLHHLDLSSTDIT-----GLPQELKALEKLRYLNLDYAFHLSIIP- 316
                      G   L ++ +  +DIT      +   LK L   R + LD    ++ +P 
Sbjct: 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 317 ----HQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSF 372
                 L+    KL                    +   G   + +    ++ +  L +  
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQG---------GLTDLGLSYIGQYSPNVRWML-LGYVG 474

Query: 373 GSSLAVQKFLKY-PKL--VSITQSVWVECGTYTRPPFNVLHLA-YMENLQELELESCNLE 428
            S   + +F +  P L  + +    + E          +      + +L+ L ++     
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERA--------IAAAVTKLPSLRYLWVQGYRA- 525

Query: 429 EMKIDSTEEVKKLFRNGFRNLNTVVLRSCR 458
                + +++ ++ R  + N+  +  R   
Sbjct: 526 ---SMTGQDLMQMARP-YWNIELIPSRRVP 551

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 222 SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHH 280
           S IP       L L    +  ++D  F+ L+ L  L+L  N    TL +G+   L  L  
Sbjct: 31  SGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGT 87

Query: 281 LDLSSTDITGLPQEL-KALEKLRYLNLDY 308
           L L++  +  LP  +   L +L  L L  
Sbjct: 88  LGLANNQLASLPLGVFDHLTQLDKLYLGG 116

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDI 288
           L TL L  N++  +  G F  L+ L  L L GN   S LPSG+   L  L  L L++  +
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL 143

Query: 289 TGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL------CGC 334
             +P      L  L+ L+L     L  +PH       KL+ + L      C  
Sbjct: 144 QSIPAGAFDKLTNLQTLSL-STNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 39/323 (12%), Positives = 91/323 (28%), Gaps = 56/323 (17%)

Query: 11  LAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWK 70
           L  +K  E+    V          +P  A ++ +EC G PL + ++G  +  +     W 
Sbjct: 286 LGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWA 339

Query: 71  RAINKMRTSA-SKFSGMKEEVFSR----LKFSYDSLSTDELRSCLLYCYLYPEDYEIPKR 125
             + +++     +        +      +  S + L  D  +       +  +D ++P +
Sbjct: 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDI-KDYYTDLSILQKDVKVPTK 398

Query: 126 ELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDD---HVKMHDMIREMSLWIACTVD 182
            L   W       + ++  D + + +   LL    +       +HD+  +       +  
Sbjct: 399 VLCVLW-----DLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453

Query: 183 KEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCP----RLVTLLLDGN 238
           ++    +V                   +            +   C      L   +   N
Sbjct: 454 QDLHRKMVT------------------QFQRYYQPHTLSPDQEDCMYWYNFLAYHMASAN 495

Query: 239 RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKAL 298
             +E+      SL  ++  +             I   V+  H+           ++    
Sbjct: 496 MHKELCA-LMFSLDWIKAKTELVG-----PAHLIHEFVAYRHI--------LDEKDCAVC 541

Query: 299 EKLRYLNLDYAFHLSIIPHQLIS 321
           E  +         L   P   I 
Sbjct: 542 ENFQEFLSLNGHLLGRQPFPNIV 564

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 222 SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHH 280
           + IPT  +   L L  N+I ++  G F SL  L+ L L  N     LP G+   L  L  
Sbjct: 36  AGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTV 92

Query: 281 LDLSSTDITGLPQEL-KALEKLRYLNLDY 308
           LDL +  +T LP  +   L  L+ L +  
Sbjct: 93  LDLGTNQLTVLPSAVFDRLVHLKELFMCC 121

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 11/136 (8%)

Query: 208 AKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
           A+ + L  N I  L      +   L  L L  N++  +  G F SL+ L VL L  N   
Sbjct: 42  AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100

Query: 266 STLPSGI-SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           + LPS +   LV L  L +    +T LP+ ++ L  L +L LD    L  IPH      S
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLS 159

Query: 325 KLEVLRL------CGC 334
            L    L      C C
Sbjct: 160 SLTHAYLFGNPWDCEC 175

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 209 KRISLTANGIGSLSEIPT---CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
             + L  N +G +S        P LV L L  N++  I    F+  S ++ L L  N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KI 90

Query: 266 STLPSGI-SGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNL 306
             + + +  GL  L  L+L    I+ +     + L  L  LNL
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 12/121 (9%)

Query: 222 SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHH 280
           + IP+      L L+ N+++ +  G F  L+ L  LSL  N    +LP G+   L  L  
Sbjct: 24  TGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTI 80

Query: 281 LDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL------CG 333
           L L    +  LP  +   L +L+ L LD    L  +P  +    + L+ + L      C 
Sbjct: 81  LYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139

Query: 334 C 334
           C
Sbjct: 140 C 140

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 45/178 (25%)

Query: 209 KRISLTANGIG-----SLSE-IPTCPRLVTLLLDGNRI-----EEITDGFFQSLSTLRVL 257
           + + L   G+       +S  +   P L  L L  N +       +  G       ++ L
Sbjct: 31  QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90

Query: 258 SLRGNFPPST----LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLS 313
           SL+           L S +  L +L  L LS   +      L+ L +             
Sbjct: 91  SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG--DAGLQLLCEG------------ 136

Query: 314 IIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS 371
                L+    +LE L+L  C           ++     EPL   L        L+ S
Sbjct: 137 -----LLDPQCRLEKLQLEYC-----------SLSAASCEPLASVLRAKPDFKELTVS 178

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 36/195 (18%), Positives = 53/195 (27%), Gaps = 54/195 (27%)

Query: 209 KRISLTANGIG-----SLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLS-------TL 254
           K +SL  N +G      L E  +    +L +L +        T       S        L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF---TAACCSHFSSVLAQNRFL 343

Query: 255 RVLSLRGNFPPSTLPSGISGLV--------SLHHLDLSSTDIT-----GLPQELKALEKL 301
             L +  N       +G+  L          L  L L+  D++      L   L A   L
Sbjct: 344 LELQISNN---RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 302 RYLNLDY-------AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354
           R L+L            L      +      LE L L                  +  + 
Sbjct: 401 RELDLSNNCLGDAGILQLV---ESVRQPGCLLEQLVLYDI-----------YWSEEMEDR 446

Query: 355 LMKELLGLKHLNVLS 369
           L         L V+S
Sbjct: 447 LQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 34/179 (18%)

Query: 212 SLTANGIGSLSE-IPTCPRLVTLLLDGNRIEE-----ITDGFFQSLSTLRVLSLRGNFPP 265
            LT  G G LS  + T P L  L L  N + +     + +G       L  L L      
Sbjct: 96  CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

Query: 266 ST----LPSGISGLVSLHHLDLSSTDI--TGLPQELKALE----KLRYLNLDY------- 308
           +     L S +        L +S+ DI   G+    + L+    +L  L L+        
Sbjct: 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215

Query: 309 AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV 367
              L      +++  + L  L L        +       LC G   L+     L+ L +
Sbjct: 216 CRDLC----GIVASKASLRELALGSNK----LGDVGMAELCPG---LLHPSSRLRTLWI 263

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 47/220 (21%)

Query: 212 SLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG 271
            +  + +  +     C +L  L L+G R   ++D    +L+                   
Sbjct: 104 VIEVSTLHGILS--QCSKLQNLSLEGLR---LSDPIVNTLAKNS---------------- 142

Query: 272 ISGLVSLHHLDLSS-TDIT--GLPQELKALEKLRYLNLDYAFHLS--IIPHQLISCFSKL 326
                +L  L+LS  +  +   L   L +  +L  LNL + F  +   +   +      +
Sbjct: 143 -----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 327 EVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFG-SSLAVQKFLKYP 385
             L L G  +         N+       L++    L HL+ LS S    +   Q+F +  
Sbjct: 198 TQLNLSGYRK---------NLQKSDLSTLVRRCPNLVHLD-LSDSVMLKNDCFQEFFQLN 247

Query: 386 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC 425
            L  ++ S    C      P  +L L  +  L+ L++   
Sbjct: 248 YLQHLSLS---RCYDII--PETLLELGEIPTLKTLQVFGI 282

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 23/166 (13%)

Query: 209 KRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
             + L  N + SL          L  L L GN+++ + +G F  L++L  L+L  N    
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ 89

Query: 267 TLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFS 324
           +LP+G+   L  L  L L++  +  LP  +   L +L+ L L     L  +P  +    +
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLT 148

Query: 325 KLEVLRL------CGCGRF-----------GVIKGKEGNVLCDGAE 353
            L+ + L      C C              GV++   G+V  D A+
Sbjct: 149 SLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAK 194

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 209 KRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267
             + L  N    +  E+     L  + L  NRI  +++  F +++ L  L L  N     
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRC 92

Query: 268 LPSGI-SGLVSLHHLDLSSTDITGLPQ----ELKALEKL 301
           +P     GL SL  L L   DI+ +P+    +L AL  L
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 35/156 (22%)

Query: 206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDG------FFQSLSTLRVLSL 259
           +   +I+     +    +    P L +++   NR+E            FQS   L  + +
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--GSMKEWAKTFQSHRLLHTVKM 194

Query: 260 RGNFP-----PSTLPSGISGLVSLHHLDLSSTDIT-----GLPQELKALEKLRYLNLDY- 308
             N          L  G++    L  LDL     T      L   LK+   LR L L+  
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 309 ----------AFHLSIIPHQLISCFSKLEVLRLCGC 334
                         S + +        L+ LRL   
Sbjct: 255 LLSARGAAAVVDAFSKLEN------IGLQTLRLQYN 284

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 227 CPRLVTLLLDGNRIEEITDGFFQSLS---------TLRVLSLRGNFPPSTLPSGISG--- 274
            P L  L+L     +   DG                L+ L +      + +         
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 275 LVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDY 308
           L  L  +D+S+  +T      L   +  ++ L+++N+ Y
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 41/185 (22%)

Query: 213 LTANGIGSLSE-IPTCPRLVTLLLDGNRI-----EEITDGFFQSLSTLRVLSLRGNFPPS 266
               G   + E       + +L L  N +      E+   F  + +++  L+L GN   S
Sbjct: 6   TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN---S 62

Query: 267 TLPSGISGL--------VSLHHLDLSSTDIT--GLPQELKALE----KLRYLNLDY---- 308
                   L         ++  L+LS   ++     + +K L      +  L+L +    
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 309 ---AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365
              +           +  + +  L L G      +  K  + L      L      +  L
Sbjct: 123 SKSSSEFK---QAFSNLPASITSLNLRGND----LGIKSSDELIQI---LAAIPANVNSL 172

Query: 366 NVLSW 370
           N L  
Sbjct: 173 N-LRG 176

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 38/169 (22%)

Query: 209 KRISLTANGIGS---------LSEIPTCPRLVTLLLDGNRI-----EEITDGFFQSLSTL 254
             ++L  N + S         L+ IP    + +L L  N +      E+   F    + +
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 255 RVLSLRGNFPPST----LPSGISGLVSLHHLDLSSTDITGLPQE--------LKALEKLR 302
             L+L  N         L      L  L  + L    +  + +E           ++K+ 
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287

Query: 303 YLNLDY-------AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKE 344
            ++ +        +  +S +   +     K +V  L         K + 
Sbjct: 288 LVDKNGKEIHPSHSIPISNL---IRELSGKADVPSLLNQCLIFAQKHQT 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	542
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.1
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.91
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.78
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.64
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.3
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.38
2fna_A	357	Conserved hypothetical protein; structural genomic	96.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.41
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.62
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	93.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.16
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	82.69

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1.1e-25  Score=223.03  Aligned_cols=293  Identities=17%  Similarity=0.209  Sum_probs=173.1

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG  271 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~  271 (542)
                      .+.....++.+..+.+++.|++.++.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..+|. 
T Consensus        52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-  127 (347)
T 4fmz_A           52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-  127 (347)
T ss_dssp             CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-
T ss_pred             eCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-
Confidence            333444444444455555555555555555445555555555555555444322  455555555555555 3444443 


Q ss_pred             cCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847          272 ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG  351 (542)
Q Consensus       272 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  351 (542)
                      +..+++|++|++++|.....+..+..+++|++|++++| .+..++.  +..+++|++|++++|.+.+             
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~-------------  191 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED-------------  191 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC-------------
T ss_pred             hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc-------------
Confidence            55555555555555522222223555555555555555 3333333  4455555555555554321             


Q ss_pred             CcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCcccee
Q 037847          352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMK  431 (542)
Q Consensus       352 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  431 (542)
                          +..+..+++|+.++++.+.......    ......++.+++.++.....    ..+..+++|++|++++|.+..++
T Consensus       192 ----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~~~  259 (347)
T 4fmz_A          192 ----ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDL----SPLANLSQLTWLEIGTNQISDIN  259 (347)
T ss_dssp             ----CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ----cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCC----cchhcCCCCCEEECCCCccCCCh
Confidence                1125666777777776554332211    22335567777776653221    22667788888888888776631


Q ss_pred             eccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceee
Q 037847          432 IDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLT  511 (542)
Q Consensus       432 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  511 (542)
                        .        ...+++|+.|++++|.+..++.+..+++|++|++++|.+.+...            .....+++|+.|+
T Consensus       260 --~--------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~l~~l~~L~~L~  317 (347)
T 4fmz_A          260 --A--------VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM------------EVIGGLTNLTTLF  317 (347)
T ss_dssp             --G--------GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH------------HHHHTCTTCSEEE
T ss_pred             --h--------HhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh------------hHhhccccCCEEE
Confidence              1        13478899999999988555778888999999999988776543            2456789999999


Q ss_pred             cccCCcccccCCCCCCCCCcceEeeccCC
Q 037847          512 MWRGTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       512 l~~c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      +.+|+ +..++. ...+++|++|++++|+
T Consensus       318 L~~n~-l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          318 LSQNH-ITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred             ccCCc-cccccC-hhhhhccceeehhhhc
Confidence            99986 666544 6679999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=3.6e-25  Score=219.43  Aligned_cols=286  Identities=19%  Similarity=0.214  Sum_probs=231.7

Q ss_pred             CCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCC
Q 037847          199 APKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSL  278 (542)
Q Consensus       199 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L  278 (542)
                      +.....+++++++++.++.+..++.+..+++|++|++++|.++.+++  +..+++|++|++++| .+..+| .++.+++|
T Consensus        37 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L  112 (347)
T 4fmz_A           37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNL  112 (347)
T ss_dssp             EECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTC
T ss_pred             cccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcC
Confidence            34455678999999999999999999999999999999999988776  889999999999999 677776 69999999


Q ss_pred             CEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847          279 HHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE  358 (542)
Q Consensus       279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (542)
                      ++|++++|.++.+|. +..+++|++|++++|.....++.  +..+++|++|++++|.+...                 ..
T Consensus       113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------------~~  172 (347)
T 4fmz_A          113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------------TP  172 (347)
T ss_dssp             SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GG
T ss_pred             CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------------hh
Confidence            999999999999887 89999999999999977777666  89999999999999986421                 12


Q ss_pred             hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847          359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV  438 (542)
Q Consensus       359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  438 (542)
                      +..+++|+.|+++.+.......    ......++.+.+.++....    ...+..+++|++|++++|.+...+.      
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~----~~~~~~~~~L~~L~l~~n~l~~~~~------  238 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGNNKITDLSP------  238 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCC----CGGGGGCTTCCEEECCSSCCCCCGG------
T ss_pred             hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCC----CchhhcCCcCCEEEccCCccCCCcc------
Confidence            6788899999998775433222    2234556778877665321    1227788999999999999877532      


Q ss_pred             cccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc
Q 037847          439 KKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL  518 (542)
Q Consensus       439 ~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  518 (542)
                          ...+++|++|++++|.+..++.+..+++|++|++++|.+++++              ....+++|+.|++.+|.--
T Consensus       239 ----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          239 ----LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS--------------VLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             ----GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCC
T ss_pred             ----hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh--------------hhcCCCCCCEEECcCCcCC
Confidence                2448999999999999866678899999999999999888763              4566999999999998543


Q ss_pred             cccCCCCCCCCCcceEeeccCC
Q 037847          519 KSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       519 ~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      ...+.....+++|++|++++|+
T Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          301 NEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             GGGHHHHHTCTTCSEEECCSSS
T ss_pred             CcChhHhhccccCCEEEccCCc
Confidence            3333335578999999999986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=6.4e-25  Score=226.05  Aligned_cols=328  Identities=17%  Similarity=0.129  Sum_probs=230.0

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCC-C-CCCCCCCccEEEccCcccc-cccchhhccCCCccEEEecCCCC
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSL-S-EIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFP  264 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~  264 (542)
                      .+...+.++..+|.  -.+++++|++++|.+..+ + .+.++++|++|++++|.+. .+++..|..+++|++|++++|..
T Consensus        14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF   91 (455)
T ss_dssp             EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred             ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence            34445566777776  337899999999999876 3 5899999999999999875 56667799999999999999954


Q ss_pred             CCcCccccCCCCCCCEEeccCCCCCc-ccHH--hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847          265 PSTLPSGISGLVSLHHLDLSSTDITG-LPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK  341 (542)
Q Consensus       265 ~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  341 (542)
                      ....|..++.+.+|++|++++|.+++ +|..  ++++++|++|++++|......|...++++++|++|++++|.+.+..+
T Consensus        92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            44558889999999999999999987 4555  88999999999999954444466557899999999999999877655


Q ss_pred             CCCCccc--------------cCCC-----cchhHhhccccCCceeeeEecchH--HHHHhhcCch--------------
Q 037847          342 GKEGNVL--------------CDGA-----EPLMKELLGLKHLNVLSWSFGSSL--AVQKFLKYPK--------------  386 (542)
Q Consensus       342 ~~~~~~~--------------~~~~-----~~~~~~l~~L~~L~~l~~~~~~~~--~~~~l~~~~~--------------  386 (542)
                      .......              ....     ......+..+++|+.|+++.+...  ....+.....              
T Consensus       172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence            4332210              0000     001112234567888888766432  1111111100              


Q ss_pred             ---------------------hhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          387 ---------------------LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       387 ---------------------~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                                           ....++.+++.++..  .......+..+++|++|++++|.+..+++..+        ..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~  321 (455)
T 3v47_A          252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--------WG  321 (455)
T ss_dssp             TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTT--------TT
T ss_pred             cccccchhhhccCcccccccccccCceEEEecCccc--cccchhhcccCCCCCEEECCCCcccccChhHh--------cC
Confidence                                 002344444443321  11112235567788888888888776554444        23


Q ss_pred             ccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC
Q 037847          446 FRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP  523 (542)
Q Consensus       446 l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  523 (542)
                      +++|++|++++|.+  ..+..++.+++|++|+|++|.++.+..            .....+++|++|++.++ .+++++.
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD------------QSFLGLPNLKELALDTN-QLKSVPD  388 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh------------hhccccccccEEECCCC-ccccCCH
Confidence            78899999999988  334457788999999999988877642            36677999999999996 5777766


Q ss_pred             CC-CCCCCcceEeeccCC
Q 037847          524 NP-QPFPKLKKIQAFHCR  540 (542)
Q Consensus       524 ~~-~~~p~L~~L~i~~C~  540 (542)
                      .. ..+++|++|++++++
T Consensus       389 ~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          389 GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             hHhccCCcccEEEccCCC
Confidence            43 678999999998765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=3.3e-25  Score=223.29  Aligned_cols=303  Identities=18%  Similarity=0.157  Sum_probs=206.2

Q ss_pred             cccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCC
Q 037847          203 EEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLH  279 (542)
Q Consensus       203 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~  279 (542)
                      ..+.+++.+++.++.+..+|.  +..+++|++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|+
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence            345788899999988888875  677889999999999888888777888999999999998 45544 55678899999


Q ss_pred             EEeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccc-cCCCcchhH
Q 037847          280 HLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL-CDGAEPLMK  357 (542)
Q Consensus       280 ~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (542)
                      +|++++|.++.+|..+ +++++|++|++++| .+..++...++.+++|++|++++|.+.+.......... -......+.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence            9999999998888774 78999999999988 55556554588889999999998876532100000000 000000011


Q ss_pred             hhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchh
Q 037847          358 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEE  437 (542)
Q Consensus       358 ~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  437 (542)
                      .+....+|+.|+++.+.....   .  ......++.|++.++....    ...+..+++|++|++++|.+....+..+. 
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~---~--~~~~~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-  269 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVV---R--GPVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFV-  269 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEE---E--CCCCSSCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGT-
T ss_pred             ccCCCCcceEEECCCCeeeec---c--ccccccccEEECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHcc-
Confidence            112223444444443322111   0  0112356666666654321    24566778888888888888776554443 


Q ss_pred             hcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          438 VKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       438 ~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                             .+++|+.|++++|.+ ..+.....+++|++|+|++|.++.++.             ....+++|+.|++.++.
T Consensus       270 -------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          270 -------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             -------TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSSC
T ss_pred             -------ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc-------------cccccCcCCEEECCCCc
Confidence                   378888888888888 434445678888888888888876643             45568889999998864


Q ss_pred             cccccCCCCCCCCCcceEeeccCC
Q 037847          517 NLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       517 ~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                       +..++  ...+++|++|++++++
T Consensus       330 -i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          330 -IVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             -CCCCC--CCTTCCCSEEECCSSC
T ss_pred             -cceeC--chhhccCCEEEcCCCC
Confidence             56654  5678899999998865

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1.2e-23  Score=217.00  Aligned_cols=136  Identities=22%  Similarity=0.383  Sum_probs=87.3

Q ss_pred             ecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847          191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS  270 (542)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~  270 (542)
                      ..+.....++.+..+.+++.|+++++.+..++.+.++++|++|++++|.+...++  +..+++|++|++++| .+..+|.
T Consensus        53 l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~  129 (466)
T 1o6v_A           53 ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP  129 (466)
T ss_dssp             CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG
T ss_pred             cCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH
Confidence            3444555566666677788888888877777667777888888888877776665  677778888888777 5666663


Q ss_pred             ccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847          271 GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       271 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                       ++.+++|++|++++|.+..+|. ++.+++|++|+++++  ...++.  ++++++|++|++++|.
T Consensus       130 -~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          130 -LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNK  188 (466)
T ss_dssp             -GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSC
T ss_pred             -HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCc
Confidence             7777777777777776666543 455555555554321  222222  4444555555554444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.9e-24  Score=229.79  Aligned_cols=302  Identities=18%  Similarity=0.161  Sum_probs=197.3

Q ss_pred             ccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCE
Q 037847          204 EWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHH  280 (542)
Q Consensus       204 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~  280 (542)
                      .+.+++.+++.++.+..+|.  +..+++|++|++++|.+..+++..|+.+++|++|++++|. +..+ |..|+.+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence            34667777777777777764  5667778888888887777776667778888888888873 4444 344677888888


Q ss_pred             EeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccc-cCCCcchhHh
Q 037847          281 LDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL-CDGAEPLMKE  358 (542)
Q Consensus       281 L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (542)
                      |++++|.++.+|..+ +++++|++|++++| .+..++...++.+++|++|++++|.+.+.......+.. -......+..
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence            888888777777664 77788888888877 44445444477778888888887776532110000000 0000001111


Q ss_pred             hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847          359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV  438 (542)
Q Consensus       359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  438 (542)
                      +....+|+.|+++.+......     ......++.|++.++....    ...+..+++|+.|++++|.+....+..+.  
T Consensus       207 l~~~~~L~~L~ls~n~l~~~~-----~~~~~~L~~L~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--  275 (597)
T 3oja_B          207 LAIPIAVEELDASHNSINVVR-----GPVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFV--  275 (597)
T ss_dssp             EECCTTCSEEECCSSCCCEEE-----CSCCSCCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGT--
T ss_pred             ccCCchhheeeccCCcccccc-----cccCCCCCEEECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhc--
Confidence            223344555555544321110     0112356777776655322    24567788999999999988876555443  


Q ss_pred             cccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCc
Q 037847          439 KKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTN  517 (542)
Q Consensus       439 ~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  517 (542)
                            .+++|+.|+|++|.+ ..+.....+|+|++|+|++|.+..++.             ....+++|+.|++.+|. 
T Consensus       276 ------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-------------~~~~l~~L~~L~L~~N~-  335 (597)
T 3oja_B          276 ------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHNS-  335 (597)
T ss_dssp             ------TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSSC-
T ss_pred             ------CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc-------------ccccCCCCCEEECCCCC-
Confidence                  378899999999888 444445668899999999988886643             45678899999998874 


Q ss_pred             ccccCCCCCCCCCcceEeeccCC
Q 037847          518 LKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       518 l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      +..++  ...+++|++|+++++|
T Consensus       336 l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          336 IVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCcC--hhhcCCCCEEEeeCCC
Confidence            55543  5678999999998875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=217.51  Aligned_cols=308  Identities=21%  Similarity=0.211  Sum_probs=224.1

Q ss_pred             EecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847          190 VRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST  267 (542)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  267 (542)
                      .-.+..+..+|... ...++.|++.+|.+..++  .+.++++|++|++++|.+..+.+..|..+++|++|++++| .+..
T Consensus        17 ~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~   94 (477)
T 2id5_A           17 LCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKL   94 (477)
T ss_dssp             ECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCS
T ss_pred             EeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCc
Confidence            33445566666522 368999999999998874  5889999999999999998887777999999999999999 6777


Q ss_pred             Ccc-ccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCC
Q 037847          268 LPS-GISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEG  345 (542)
Q Consensus       268 lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  345 (542)
                      +|. .++.+.+|++|++++|.+..+ |..+.++++|++|++++| .+..++...+..+++|++|++++|.+.+.      
T Consensus        95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------  167 (477)
T 2id5_A           95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI------  167 (477)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC------
T ss_pred             cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc------
Confidence            775 478999999999999999885 667899999999999999 55555544588999999999999977532      


Q ss_pred             ccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeeccc
Q 037847          346 NVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC  425 (542)
Q Consensus       346 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  425 (542)
                               ....+..+++|+.|+++.+......  .........++.|.+.++...  ...........+|++|++++|
T Consensus       168 ---------~~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          168 ---------PTEALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYL--DTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             ---------CHHHHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTC--CEECTTTTTTCCCSEEEEESS
T ss_pred             ---------ChhHhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccc--cccCcccccCccccEEECcCC
Confidence                     2234677888888888866532211  011222355677777664421  111112223348888888888


Q ss_pred             CccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCC
Q 037847          426 NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNF  503 (542)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~  503 (542)
                      .+..++...+        ..+++|+.|+|++|.+  .....+..+++|++|+|++|.++.+..            .....
T Consensus       235 ~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~~~~  294 (477)
T 2id5_A          235 NLTAVPYLAV--------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP------------YAFRG  294 (477)
T ss_dssp             CCCSCCHHHH--------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT------------TTBTT
T ss_pred             cccccCHHHh--------cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH------------HHhcC
Confidence            8776543333        3378888888888888  223346788888888888888877643            35667


Q ss_pred             CCccceeecccCCcccccCCC-CCCCCCcceEeeccCC
Q 037847          504 FPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAFHCR  540 (542)
Q Consensus       504 ~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~~C~  540 (542)
                      +++|+.|++.++ .+..++.. ...+++|++|++++.|
T Consensus       295 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          295 LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             cccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            888999999886 56666543 3567888999888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1e-23  Score=207.48  Aligned_cols=295  Identities=16%  Similarity=0.130  Sum_probs=206.8

Q ss_pred             cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccC
Q 037847          207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSS  285 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~  285 (542)
                      .++.+++.++.+..+|... .+++++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence            5778888888888776532 468888899888888887766888888999999888 44444 77788888899999988


Q ss_pred             CCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          286 TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       286 ~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      |.++.+|..+.  ++|++|++++| .+..+|...+.++++|++|++++|.+...             ......+..+ +|
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-~L  174 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-KL  174 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-CC
T ss_pred             CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-cc
Confidence            88888887765  78889998888 56667766678888899998888876421             0111223444 67


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.++++.+....   +..  .....++.|++.+...  .......+..+++|++|++++|.+..++...+        ..
T Consensus       175 ~~L~l~~n~l~~---l~~--~~~~~L~~L~l~~n~i--~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~  239 (332)
T 2ft3_A          175 NYLRISEAKLTG---IPK--DLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SF  239 (332)
T ss_dssp             SCCBCCSSBCSS---CCS--SSCSSCSCCBCCSSCC--CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GG
T ss_pred             CEEECcCCCCCc---cCc--cccCCCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hC
Confidence            777776654322   111  1124567777766542  12223456778999999999999988655444        34


Q ss_pred             ccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccc-ccC-
Q 037847          446 FRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK-SVY-  522 (542)
Q Consensus       446 l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~-  522 (542)
                      +++|+.|++++|.+ ..+..+..+++|++|++++|.++.++...+...      .....+++|+.|.+.+++... ++. 
T Consensus       240 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~------~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV------GFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS------SCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             CCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccc------ccccccccccceEeecCcccccccCc
Confidence            89999999999999 666678999999999999999998865332211      012237889999999987321 222 


Q ss_pred             CCCCCCCCcceEeeccCCC
Q 037847          523 PNPQPFPKLKKIQAFHCRQ  541 (542)
Q Consensus       523 ~~~~~~p~L~~L~i~~C~~  541 (542)
                      .....+++|+.++++++.+
T Consensus       314 ~~~~~l~~L~~l~l~~n~~  332 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNYKK  332 (332)
T ss_dssp             GGGTTBCCSTTEEC-----
T ss_pred             ccccccchhhhhhcccccC
Confidence            2344578999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=2.9e-23  Score=221.66  Aligned_cols=151  Identities=26%  Similarity=0.263  Sum_probs=123.5

Q ss_pred             EEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847          189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS  266 (542)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  266 (542)
                      +...+..+..+|... ..+++.|++++|.+..++  .+.++++|++|++++|.++.+++..|.++++|++|++++|. +.
T Consensus        16 ~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~   93 (606)
T 3vq2_A           16 YQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQ   93 (606)
T ss_dssp             EECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred             eEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-cc
Confidence            444556667777532 278999999999998875  48899999999999999988888778999999999999994 55


Q ss_pred             cC-ccccCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccccccC
Q 037847          267 TL-PSGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFGVIKG  342 (542)
Q Consensus       267 ~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~  342 (542)
                      .+ |..|+.+.+|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+.+..|.
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTT
T ss_pred             ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChh
Confidence            44 888999999999999999998876 678999999999999994433 46776 88999999999999987765443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=7.1e-24  Score=230.91  Aligned_cols=329  Identities=12%  Similarity=0.038  Sum_probs=193.3

Q ss_pred             ccccccceEEEeecCCcCC------------------CCC-CC--CCCCccEEEccCcccccccchhhccCCCccEEEec
Q 037847          202 VEEWEGAKRISLTANGIGS------------------LSE-IP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLR  260 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  260 (542)
                      +..+.+++.|++++|.+..                  +|. +.  ++++|++|++++|.+....+..++.+++|++|+++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            6677889999999999887                  764 55  89999999999998766555668999999999999


Q ss_pred             CCCCCC--cCccccCCCC-------CCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEE
Q 037847          261 GNFPPS--TLPSGISGLV-------SLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVL  329 (542)
Q Consensus       261 ~~~~~~--~lp~~i~~l~-------~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L  329 (542)
                      +|..+.  .+|..++.+.       +|++|++++|.++.+|.  .++++++|++|++++| .+..+| . ++++++|++|
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L  600 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDL  600 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEE
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceEE
Confidence            995244  5787666554       99999999999999998  8999999999999998 455888 3 8899999999


Q ss_pred             eccCccccccccCCCCccc---------cCCCcchhHhhccc--cCCceeeeEecchHHH-HHhhcCch--hhccceeEE
Q 037847          330 RLCGCGRFGVIKGKEGNVL---------CDGAEPLMKELLGL--KHLNVLSWSFGSSLAV-QKFLKYPK--LVSITQSVW  395 (542)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~L--~~L~~l~~~~~~~~~~-~~l~~~~~--~~~~l~~l~  395 (542)
                      ++++|.+. .+|.......         .......+..+..+  ++|+.|+++.+..... ..+.....  ....++.|+
T Consensus       601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             ECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            99998876 4443211100         00000111111122  1244444444432110 00000000  011345555


Q ss_pred             eccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh--hccCcc
Q 037847          396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV--FVQNLK  472 (542)
Q Consensus       396 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~--~l~~L~  472 (542)
                      +.++...  ......+..+++|+.|++++|.+..++...+.... ....++++|+.|+|++|.+ ..+..+.  .+++|+
T Consensus       680 Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~-~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~  756 (876)
T 4ecn_A          680 LSYNEIQ--KFPTELFATGSPISTIILSNNLMTSIPENSLKPKD-GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS  756 (876)
T ss_dssp             CCSSCCC--SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT-SCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCC
T ss_pred             ccCCcCC--ccCHHHHccCCCCCEEECCCCcCCccChHHhcccc-ccccccCCccEEECCCCCCccchHHhhhccCCCcC
Confidence            5544321  11111223456777777777766654433221100 0011234677777777766 4444454  667777


Q ss_pred             eEEEeccchhhhcccc-cc----------------cccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEe
Q 037847          473 QLNMQGFTMEEIISVE-KL----------------SDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQ  535 (542)
Q Consensus       473 ~L~L~~~~l~~~~~~~-~~----------------~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~  535 (542)
                      .|+|++|.++.++..- .+                ..+.+..|.....+++|+.|++.+|. +..+|...  +++|+.|+
T Consensus       757 ~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~Ld  833 (876)
T 4ecn_A          757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILD  833 (876)
T ss_dssp             EEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEE
T ss_pred             EEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEE
Confidence            7777776666543200 00                00011112344456666666666653 35555442  35677777


Q ss_pred             eccCC
Q 037847          536 AFHCR  540 (542)
Q Consensus       536 i~~C~  540 (542)
                      +++|+
T Consensus       834 Ls~N~  838 (876)
T 4ecn_A          834 IADNP  838 (876)
T ss_dssp             CCSCT
T ss_pred             CCCCC
Confidence            76665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=2.5e-24  Score=230.18  Aligned_cols=134  Identities=15%  Similarity=0.153  Sum_probs=78.6

Q ss_pred             ccccccceEEEeecCCcCC------------------CCC-CC--CCCCccEEEccCcccccccchhhccCCCccEEEec
Q 037847          202 VEEWEGAKRISLTANGIGS------------------LSE-IP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLR  260 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  260 (542)
                      +..+.+++.|++.+|.+..                  +|. +.  ++++|++|++++|.+....+..++.+++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            4455666666666666665                  543 44  56666666666665544444446666666666666


Q ss_pred             CCCCCC--cCccccCCC------CCCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEe
Q 037847          261 GNFPPS--TLPSGISGL------VSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLR  330 (542)
Q Consensus       261 ~~~~~~--~lp~~i~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~  330 (542)
                      +|..+.  .+|..++.+      ++|++|++++|.++.+|.  .++++++|++|++++|.....+| . ++.+++|++|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence            663133  456555554      666666666666666666  66666666666666663322555 2 55555666666


Q ss_pred             ccCcccc
Q 037847          331 LCGCGRF  337 (542)
Q Consensus       331 l~~~~~~  337 (542)
                      +++|.+.
T Consensus       360 L~~N~l~  366 (636)
T 4eco_A          360 LAYNQIT  366 (636)
T ss_dssp             CCSSEEE
T ss_pred             CCCCccc
Confidence            6555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=6.8e-23  Score=211.31  Aligned_cols=311  Identities=18%  Similarity=0.217  Sum_probs=184.5

Q ss_pred             eEEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847          187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS  266 (542)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  266 (542)
                      ..+...+..+..++.+..+.+++.|++.++.+..++.+.++++|++|++++|.+..+++  +..+++|++|++++| .+.
T Consensus        71 ~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~  147 (466)
T 1o6v_A           71 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TIS  147 (466)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EEC
T ss_pred             CEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccC
Confidence            34444555566666666777788888888877777667778888888888887776655  677788888888777 455


Q ss_pred             cCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCC-
Q 037847          267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEG-  345 (542)
Q Consensus       267 ~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-  345 (542)
                      .+| .++.+.+|++|++++ .+..++. +.++++|++|++++| .+..++.  +..+++|++|++++|.+.+..|.... 
T Consensus       148 ~~~-~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~  221 (466)
T 1o6v_A          148 DIS-ALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITPLGILT  221 (466)
T ss_dssp             CCG-GGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred             CCh-hhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCcccccccccccC
Confidence            555 355666666665542 3333332 555555555555555 3444433  45555555555555554332210000 


Q ss_pred             c----cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceee
Q 037847          346 N----VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  421 (542)
Q Consensus       346 ~----~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~  421 (542)
                      +    .........+..+..+++|+.|+++.+.......    ......++.|.+.++....    ...+..+++|++|+
T Consensus       222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~  293 (466)
T 1o6v_A          222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISN----ISPLAGLTALTNLE  293 (466)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCC----CGGGTTCTTCSEEE
T ss_pred             CCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCc----cccccCCCccCeEE
Confidence            0    0000000111345566666666666554322211    1122445666665554211    11255667777777


Q ss_pred             ecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcC
Q 037847          422 LESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEH  501 (542)
Q Consensus       422 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  501 (542)
                      +++|.+..+++          ...+++|+.|++++|.+...+++..+++|++|++++|.++++.              ..
T Consensus       294 L~~n~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~l  349 (466)
T 1o6v_A          294 LNENQLEDISP----------ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS--------------SL  349 (466)
T ss_dssp             CCSSCCSCCGG----------GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG--------------GG
T ss_pred             cCCCcccCchh----------hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch--------------hh
Confidence            77776665321          2347788888888887744444777888888888887776652              44


Q ss_pred             CCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847          502 NFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       502 ~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      ..+++|+.|++.+|. +..++. ...+++|++|++++|+
T Consensus       350 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             TTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred             ccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence            568888889888874 455443 6678889999888773

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=6.9e-23  Score=201.42  Aligned_cols=295  Identities=16%  Similarity=0.142  Sum_probs=207.3

Q ss_pred             ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccC
Q 037847          206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS  285 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~  285 (542)
                      .+++.+++.++.+..+|.. -.++++.|++++|.++.+++..+..+++|++|++++|......|..++.+++|++|++++
T Consensus        31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            3567778887777777642 236788888888888887776688888888888888843333477788888888888888


Q ss_pred             CCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          286 TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       286 ~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      |.++.+|..+.  ++|++|++++| .+..++...+.++++|++|++++|.+..             .......+.++++|
T Consensus       110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L  173 (330)
T 1xku_A          110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKL  173 (330)
T ss_dssp             SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTC
T ss_pred             CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCCc
Confidence            88888877654  68888888888 5566666557888888888888877632             11223446677788


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.|+++.+....   +..  .....++.|++.++..  .......+..+++|++|++++|.+..++...+        ..
T Consensus       174 ~~L~l~~n~l~~---l~~--~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~  238 (330)
T 1xku_A          174 SYIRIADTNITT---IPQ--GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--------AN  238 (330)
T ss_dssp             CEEECCSSCCCS---CCS--SCCTTCSEEECTTSCC--CEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------GG
T ss_pred             CEEECCCCcccc---CCc--cccccCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCceeChhhc--------cC
Confidence            888877655321   111  1125677777766542  12223457788999999999999987655444        33


Q ss_pred             ccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC-
Q 037847          446 FRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP-  523 (542)
Q Consensus       446 l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-  523 (542)
                      +++|++|++++|.+ ..+..+..+++|++|++++|.++.++...+...      .....+++|+.|++.+.+ +..+.. 
T Consensus       239 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~------~~~~~~~~l~~l~l~~N~-~~~~~i~  311 (330)
T 1xku_A          239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP------GYNTKKASYSGVSLFSNP-VQYWEIQ  311 (330)
T ss_dssp             STTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS------SCCTTSCCCSEEECCSSS-SCGGGSC
T ss_pred             CCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc------ccccccccccceEeecCc-ccccccC
Confidence            89999999999999 666778899999999999999998875433221      122346889999999876 333222 


Q ss_pred             --CCCCCCCcceEeeccC
Q 037847          524 --NPQPFPKLKKIQAFHC  539 (542)
Q Consensus       524 --~~~~~p~L~~L~i~~C  539 (542)
                        ....+++|+.++++++
T Consensus       312 ~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          312 PSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGGTTCCCGGGEEC---
T ss_pred             ccccccccceeEEEeccc
Confidence              3345778888888775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=7.1e-24  Score=226.67  Aligned_cols=296  Identities=14%  Similarity=0.139  Sum_probs=203.5

Q ss_pred             CCCCCCccEEEccCccccc------------------ccchhhc--cCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847          224 IPTCPRLVTLLLDGNRIEE------------------ITDGFFQ--SLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL  283 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l  283 (542)
                      +.++++|++|++++|.++.                  +|.. ++  .+++|++|++++|.....+|..++++++|++|++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            6789999999999999988                  6655 77  9999999999999778899999999999999999


Q ss_pred             cCCC-CCc--ccHHhhcC------CCCCEEeccCCcccCccch--hhcCCCCCCcEEeccCccccccccCCCCcc-----
Q 037847          284 SSTD-ITG--LPQELKAL------EKLRYLNLDYAFHLSIIPH--QLISCFSKLEVLRLCGCGRFGVIKGKEGNV-----  347 (542)
Q Consensus       284 ~~~~-i~~--lp~~i~~l------~~L~~L~l~~~~~~~~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----  347 (542)
                      ++|. ++.  +|..++++      ++|++|++++| .+..+|.  . ++++++|++|++++|.+.+.+| .....     
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~  357 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS  357 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence            9998 885  99999887      99999999999 5668997  5 8999999999999999987777 32211     


Q ss_pred             ---ccCCCcchhHhhccccC-CceeeeEecchHHHHHhhcCchhh--ccceeEEeccccCCCC-----------------
Q 037847          348 ---LCDGAEPLMKELLGLKH-LNVLSWSFGSSLAVQKFLKYPKLV--SITQSVWVECGTYTRP-----------------  404 (542)
Q Consensus       348 ---~~~~~~~~~~~l~~L~~-L~~l~~~~~~~~~~~~l~~~~~~~--~~l~~l~l~~~~~~~~-----------------  404 (542)
                         ........+..+..+++ |+.|+++.+....   +.......  ..++.+++..+.....                 
T Consensus       358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~  434 (636)
T 4eco_A          358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN  434 (636)
T ss_dssp             EECCSSEEEECCTTSEEECTTCCEEECCSSCCSS---CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred             EECCCCccccccHhhhhhcccCcEEEccCCcCcc---cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence               11112234455777888 8888888765332   22221111  1455555554432110                 


Q ss_pred             ------------CceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh--hcc
Q 037847          405 ------------PFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV--FVQ  469 (542)
Q Consensus       405 ------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~--~l~  469 (542)
                                  ......+..+++|++|++++|.+..++...+.... .....+++|+.|++++|.+ ..+..+.  .++
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~  513 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP  513 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-EECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred             CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-ccccccCCccEEECcCCcCCccChhhhhccCC
Confidence                        00000112234455555555554433322211000 0001123888888888888 5555555  788


Q ss_pred             CcceEEEeccchhhhcccccccccccccCCcCCCCCccceeeccc------CCcccccCCCCCCCCCcceEeeccCC
Q 037847          470 NLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWR------GTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       470 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      +|++|+|++|.++.++.             ....+++|+.|++.+      +.-...+|.....+++|++|++++|.
T Consensus       514 ~L~~L~Ls~N~l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          514 YLVGIDLSYNSFSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             TCCEEECCSSCCSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             CcCEEECCCCCCCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence            88888888888877532             566789999999954      33345666677778999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=4.2e-23  Score=216.19  Aligned_cols=141  Identities=23%  Similarity=0.287  Sum_probs=116.1

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      .+...+..+..+|.... .++++|++++|.+..++  .+.++++|++|++++|.++.+++..|..+++|++|++++| .+
T Consensus         4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l   81 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KL   81 (520)
T ss_dssp             EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CC
T ss_pred             eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ce
Confidence            34445566677775333 78999999999998875  4889999999999999999887777999999999999999 67


Q ss_pred             CcCccccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCC--cEEeccCccc
Q 037847          266 STLPSGISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL--EVLRLCGCGR  336 (542)
Q Consensus       266 ~~lp~~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~  336 (542)
                      ..+|..  .+.+|++|++++|.++.  +|..++++++|++|++++|. +..  . .+..+++|  ++|++++|.+
T Consensus        82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~-~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--S-SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--G-GGGGGTTSCEEEEEEEECTT
T ss_pred             eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--h-hccccccceeeEEEeecccc
Confidence            788876  89999999999999987  57899999999999999984 433  1 25666677  8888888776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=4e-23  Score=218.87  Aligned_cols=144  Identities=30%  Similarity=0.367  Sum_probs=94.6

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-  268 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-  268 (542)
                      .+.++..+|.. -...+++|++++|.+..++  .+.++++|++|++++|.+..+++..|..+++|++|++++| .+..+ 
T Consensus        15 ~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~   92 (570)
T 2z63_A           15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLA   92 (570)
T ss_dssp             CSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred             CCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccC
Confidence            34445555542 1246777777777776654  4677777777777777777766666777777777777777 34444 


Q ss_pred             ccccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccc
Q 037847          269 PSGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       269 p~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      |..|+.+.+|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+.+
T Consensus        93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred             HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence            3567777777777777777776654 46777777777777773222 35655 6677777777777766544

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.90  E-value=4.6e-25  Score=231.13  Aligned_cols=163  Identities=15%  Similarity=0.206  Sum_probs=130.7

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF   83 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~   83 (542)
                      .+|+|++|+++|||+||+++||...  .++++.+++.+|+++|+|+||||+++|+.|+.+ +   |+.+ +.+.+..+..
T Consensus       286 ~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~  358 (549)
T 2a5y_B          286 EFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESR  358 (549)
T ss_dssp             EEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHH
T ss_pred             eEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhcc
Confidence            5799999999999999999998664  357889999999999999999999999999773 3   5443 3444332221


Q ss_pred             CCChHHHHHHHHhhcCCCCchhhhHHHh-----------hhccCCCCcccChHHHHHHHHHc--CCcccc-------chh
Q 037847           84 SGMKEEVFSRLKFSYDSLSTDELRSCLL-----------YCYLYPEDYEIPKRELIDYWISE--GFVYDF-------DDG  143 (542)
Q Consensus        84 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~~~~~~Li~~w~a~--g~i~~~-------~~~  143 (542)
                      .  ..++..++++||++||+ ++|.||+           |||+||+++.|+    +++|+|+  ||+...       +++
T Consensus       359 ~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~  431 (549)
T 2a5y_B          359 G--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA  431 (549)
T ss_dssp             C--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred             c--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence            1  12678899999999999 8999999           999999999998    8999999  999643       455


Q ss_pred             chHHHHHHHhcccccc---CCCeEEeehHHHHHHHHHHccc
Q 037847          144 CDFIDDLLQACLLEEE---GDDHVKMHDMIREMSLWIACTV  181 (542)
Q Consensus       144 ~~~~~~L~~~~l~~~~---~~~~~~mhdl~~~~~~~i~~~~  181 (542)
                      + ||++|+++||++..   ....|+|||++|++|+.+++.+
T Consensus       432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~  471 (549)
T 2a5y_B          432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ  471 (549)
T ss_dssp             H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred             H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence            5 99999999999974   4568999999999999887654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1.8e-23  Score=228.65  Aligned_cols=318  Identities=17%  Similarity=0.140  Sum_probs=161.6

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCC-CCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC--
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGS-LSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL--  268 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l--  268 (542)
                      .+..+........+.+++.|++.+|.+.. +|.+.++++|++|++++|.+....+..+..+++|++|++++|.....+  
T Consensus       186 s~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  265 (768)
T 3rgz_A          186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP  265 (768)
T ss_dssp             CSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred             CCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence            33344444444566777778887777765 455777777888888877776555555777777777777777433233  


Q ss_pred             --------------------ccccCCC-CCCCEEeccCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCC
Q 037847          269 --------------------PSGISGL-VSLHHLDLSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL  326 (542)
Q Consensus       269 --------------------p~~i~~l-~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L  326 (542)
                                          |..++.+ ++|++|++++|.++. +|..++++++|++|++++|.....+|...++++++|
T Consensus       266 ~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L  345 (768)
T 3rgz_A          266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL  345 (768)
T ss_dssp             CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred             cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence                                3333332 444444444444432 344444444444444444432224443334444445


Q ss_pred             cEEeccCccccccccCCCCccccCCCcchhHhhcccc-CCceeeeEecchHH--HHHhhcCchhhccceeEEeccccCCC
Q 037847          327 EVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK-HLNVLSWSFGSSLA--VQKFLKYPKLVSITQSVWVECGTYTR  403 (542)
Q Consensus       327 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~l~~~~~~~~~--~~~l~~~~~~~~~l~~l~l~~~~~~~  403 (542)
                      ++|++++|.+.+.+|.               .+..+. +|+.|+++.+....  ...+  .......++.+++.++... 
T Consensus       346 ~~L~Ls~n~l~~~~p~---------------~l~~l~~~L~~L~Ls~N~l~~~~~~~~--~~~~~~~L~~L~L~~n~l~-  407 (768)
T 3rgz_A          346 KVLDLSFNEFSGELPE---------------SLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFT-  407 (768)
T ss_dssp             CEEECCSSEEEECCCT---------------THHHHTTTCSEEECCSSEEEEECCTTT--TCSTTCCCCEEECCSSEEE-
T ss_pred             CEEeCcCCccCccccH---------------HHHhhhcCCcEEEccCCCcCCCcChhh--hhcccCCccEEECCCCccc-
Confidence            5555444444333222               122222 33333333222100  0000  0000123344444333210 


Q ss_pred             CCceecccccccccceeeecccCccceeeccchhhc--------------c--cccccccccCEEEEccCCC--CCcchh
Q 037847          404 PPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK--------------K--LFRNGFRNLNTVVLRSCRG--KDLTWL  465 (542)
Q Consensus       404 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------------~--~~~~~l~~L~~L~L~~c~~--~~~~~l  465 (542)
                       ......+..+++|++|++++|.+....+..+....              .  .....+++|+.|++++|.+  ..+..+
T Consensus       408 -~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          408 -GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             -EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             -cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence             00111233444455555555444432222111100              0  0012356677777777766  344456


Q ss_pred             hhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847          466 VFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       466 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      +.+++|++|+|++|.+....            +...+.+++|++|++.+|.-...+|.....+++|++|++++|+
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~------------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEI------------PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCC------------CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             hcCCCCCEEEccCCccCCcC------------ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            66777777777776665332            2356678888888888876555677777778888888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=4.1e-23  Score=217.78  Aligned_cols=150  Identities=23%  Similarity=0.261  Sum_probs=126.9

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP  269 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp  269 (542)
                      .+..+..+|... ...+++|++++|.+..++  .+.++++|++|++++|.+..+++..|..+++|++|++++| .+..+|
T Consensus        13 ~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~   90 (549)
T 2z81_A           13 RSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLS   90 (549)
T ss_dssp             TTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCC
T ss_pred             CCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccC
Confidence            445666677533 378999999999998763  5899999999999999999988878999999999999999 555555


Q ss_pred             c-ccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCC
Q 037847          270 S-GISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGK  343 (542)
Q Consensus       270 ~-~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~  343 (542)
                      . .++.+++|++|++++|.++.  .|..++++++|++|++++|.....+|...++++++|++|++++|.+.+..|..
T Consensus        91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            4 49999999999999999985  46789999999999999996678887655899999999999999987765543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=8.1e-23  Score=205.83  Aligned_cols=273  Identities=16%  Similarity=0.145  Sum_probs=181.9

Q ss_pred             CCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCccc-HHhhcCCCCC
Q 037847          225 PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLP-QELKALEKLR  302 (542)
Q Consensus       225 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~  302 (542)
                      ..+++++.|+++++.+..+++..+..+++|++|++++| .+..+| ..++.+.+|++|++++|.++.+| ..++++++|+
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            45689999999999999999988999999999999999 566555 58999999999999999999975 4589999999


Q ss_pred             EEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhh
Q 037847          303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFL  382 (542)
Q Consensus       303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~  382 (542)
                      +|++++| .+..+|...++++++|++|++++|.+.+..|               ..+..+++|+.|+++.+.....    
T Consensus       121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~----  180 (390)
T 3o6n_A          121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIED---------------DTFQATTSLQNLQLSSNRLTHV----  180 (390)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT---------------TTTSSCTTCCEEECCSSCCSBC----
T ss_pred             EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccCh---------------hhccCCCCCCEEECCCCcCCcc----
Confidence            9999999 6778988767899999999999998764322               2355667777777776543211    


Q ss_pred             cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhc-----------ccccccccccCE
Q 037847          383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK-----------KLFRNGFRNLNT  451 (542)
Q Consensus       383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-----------~~~~~~l~~L~~  451 (542)
                       .....+.++.+.+.....       ..+...++|++|++++|.+..++........           ......+++|++
T Consensus       181 -~~~~l~~L~~L~l~~n~l-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~  252 (390)
T 3o6n_A          181 -DLSLIPSLFHANVSYNLL-------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE  252 (390)
T ss_dssp             -CGGGCTTCSEEECCSSCC-------SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             -ccccccccceeecccccc-------cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccE
Confidence             011123344444433221       1122233444444444444332211000000           001133566777


Q ss_pred             EEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCC
Q 037847          452 VVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFP  529 (542)
Q Consensus       452 L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p  529 (542)
                      |++++|.+  ..+..+..+++|++|+|++|.++.++.             ....+++|++|++.++ .+..++.....++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~  318 (390)
T 3o6n_A          253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFD  318 (390)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred             EECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-------------ccCCCCCCCEEECCCC-cceecCccccccC
Confidence            77777666  223445666777777777766665532             3456777888888776 4666665555677


Q ss_pred             CcceEeeccCC
Q 037847          530 KLKKIQAFHCR  540 (542)
Q Consensus       530 ~L~~L~i~~C~  540 (542)
                      +|++|++++|+
T Consensus       319 ~L~~L~L~~N~  329 (390)
T 3o6n_A          319 RLENLYLDHNS  329 (390)
T ss_dssp             TCSEEECCSSC
T ss_pred             cCCEEECCCCc
Confidence            88888877764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=1.4e-22  Score=216.34  Aligned_cols=303  Identities=19%  Similarity=0.150  Sum_probs=147.2

Q ss_pred             ccccccceEEEeecCCcCCC--CCCCCCCCccEEEccCcccccccchhhccCCCcc--EEEecCCCCCCcCc--------
Q 037847          202 VEEWEGAKRISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLR--VLSLRGNFPPSTLP--------  269 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~lp--------  269 (542)
                      +..+.+++.|++.+|.+..+  +.+..+++|++|++++|.+..+++..++.+++|+  .|++++|. +..++        
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~  203 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAV  203 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTTTTTTCE
T ss_pred             hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc-cCccChhHhhhcc
Confidence            44556677777777766654  4555577777777777766666555566666666  56666552 22211        


Q ss_pred             --------------------------------------------------------------------cccCCCCCCCEE
Q 037847          270 --------------------------------------------------------------------SGISGLVSLHHL  281 (542)
Q Consensus       270 --------------------------------------------------------------------~~i~~l~~L~~L  281 (542)
                                                                                          ..++.+++|++|
T Consensus       204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  283 (606)
T 3t6q_A          204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL  283 (606)
T ss_dssp             EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred             ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence                                                                                113344444444


Q ss_pred             eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847          282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG  361 (542)
Q Consensus       282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  361 (542)
                      ++++|.++.+|..+..+++|++|++++| .+..++...+.++++|++|++++|.+.+.+|.              ..+..
T Consensus       284 ~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------------~~~~~  348 (606)
T 3t6q_A          284 DLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGT--------------GCLEN  348 (606)
T ss_dssp             ECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS--------------STTTT
T ss_pred             eccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccch--------------hhhhc
Confidence            4444444444444444444444444444 22222222244444444444444443322211              12445


Q ss_pred             ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847          362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL  441 (542)
Q Consensus       362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  441 (542)
                      +++|+.|+++.+.................++.+++.++..  .......+..+++|++|++++|.+....+..       
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------  419 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP--LSLKTEAFKECPQLELLDLAFTRLKVKDAQS-------  419 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC--EEECTTTTTTCTTCSEEECTTCCEECCTTCC-------
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC--CcCCHHHhcCCccCCeEECCCCcCCCcccch-------
Confidence            5556666555443221110011112223445555544331  0111123445566666666666554421111       


Q ss_pred             ccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccc
Q 037847          442 FRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK  519 (542)
Q Consensus       442 ~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  519 (542)
                      ....+++|+.|++++|.+  ..+..++.+++|++|+|++|.+.+.....         +.....+++|+.|++.+|. +.
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~~l~~L~~L~Ls~n~-l~  489 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK---------TNSLQTLGRLEILVLSFCD-LS  489 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS---------SCGGGGCTTCCEEECTTSC-CC
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc---------chhhccCCCccEEECCCCc-cC
Confidence            012356677777776666  23334566667777777666665421100         1134445666666666653 33


Q ss_pred             cc-CCCCCCCCCcceEeeccC
Q 037847          520 SV-YPNPQPFPKLKKIQAFHC  539 (542)
Q Consensus       520 ~~-~~~~~~~p~L~~L~i~~C  539 (542)
                      .+ +.....+++|++|+++++
T Consensus       490 ~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          490 SIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSS
T ss_pred             ccChhhhccccCCCEEECCCC
Confidence            33 233445566666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.3e-22  Score=214.33  Aligned_cols=142  Identities=28%  Similarity=0.313  Sum_probs=118.3

Q ss_pred             eEEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCC
Q 037847          187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP  264 (542)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  264 (542)
                      ..+...+..+..+|... ..+++.|++++|.+..++  .+.++++|++|++++|.++.+++..|..+++|++|++++| .
T Consensus        34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~  111 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-R  111 (562)
T ss_dssp             CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred             cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-c
Confidence            45555666777777533 278999999999999886  5899999999999999999988888999999999999999 6


Q ss_pred             CCcCccccCCCCCCCEEeccCCCCCccc--HHhhcCCCCCEEeccCCcccCccchhhcCCCCCC--cEEeccCccc
Q 037847          265 PSTLPSGISGLVSLHHLDLSSTDITGLP--QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL--EVLRLCGCGR  336 (542)
Q Consensus       265 ~~~lp~~i~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~  336 (542)
                      +..+|..  .+.+|++|++++|.++.+|  ..++++++|++|++++|. +...+   +..+++|  ++|++++|.+
T Consensus       112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence            7889876  8999999999999999864  789999999999999984 44322   4445555  9999988877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.2e-22  Score=207.98  Aligned_cols=232  Identities=18%  Similarity=0.192  Sum_probs=125.7

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL  281 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L  281 (542)
                      +..+.+++.+++.++.+..+|.+..+++|++|++++|.++.++   ++.+++|++|++++| .+..+|  ++.+++|++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence            3445566666666666666666666666666666666665542   556666666666666 444443  6666666666


Q ss_pred             eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847          282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG  361 (542)
Q Consensus       282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  361 (542)
                      ++++|.++.+|  ++.+++|++|++++| .+..++   ++.+++|++|++++|...+.+                 .+..
T Consensus       112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~-----------------~~~~  168 (457)
T 3bz5_A          112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKL-----------------DVTP  168 (457)
T ss_dssp             ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCC-----------------CCTT
T ss_pred             ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccccc-----------------cccc
Confidence            66666666664  566666666666666 344443   456666666666666433211                 1344


Q ss_pred             ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847          362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL  441 (542)
Q Consensus       362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  441 (542)
                      +++|+.|+++.+......     ......++.+.+.++.....     .+..+++|++|++++|.+..++          
T Consensus       169 l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip----------  228 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID----------  228 (457)
T ss_dssp             CTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC----------
T ss_pred             CCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccccC----------
Confidence            555555555544322210     11123345555544432111     2445566666666666655532          


Q ss_pred             ccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhh
Q 037847          442 FRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       442 ~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                       ...+++|+.|++++|.+..++ ++.+++|+.|+++++.++.+
T Consensus       229 -~~~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~L~~L  269 (457)
T 3bz5_A          229 -VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEI  269 (457)
T ss_dssp             -CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTCCCSCC
T ss_pred             -ccccCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCCCCCEE
Confidence             122556666666666552222 34455555555555444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=1e-22  Score=215.81  Aligned_cols=152  Identities=21%  Similarity=0.219  Sum_probs=121.4

Q ss_pred             EEEecCcccccCC--cccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCC
Q 037847          188 FLVRAGVKLTEAP--KVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF  263 (542)
Q Consensus       188 ~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  263 (542)
                      .+...+..+..++  .+..+.++++|++.+|.+..++  .+.++++|++|++++|.+..+++..|.++++|++|++++| 
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-  110 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-  110 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-
Confidence            3344444444443  4677889999999999998875  4889999999999999998888877999999999999999 


Q ss_pred             CCCcCcc-ccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCC----cEEeccCccc
Q 037847          264 PPSTLPS-GISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL----EVLRLCGCGR  336 (542)
Q Consensus       264 ~~~~lp~-~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L----~~L~l~~~~~  336 (542)
                      .+..+|. .++.+.+|++|++++|.++.  +|..++++++|++|++++| .+..++...++.+++|    ++|++++|.+
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCc
Confidence            6776664 68999999999999998886  7999999999999999999 4555544336666666    7788887776


Q ss_pred             ccccc
Q 037847          337 FGVIK  341 (542)
Q Consensus       337 ~~~~~  341 (542)
                      .+..|
T Consensus       190 ~~~~~  194 (570)
T 2z63_A          190 NFIQP  194 (570)
T ss_dssp             CEECT
T ss_pred             eecCH
Confidence            55443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=2.7e-22  Score=214.09  Aligned_cols=146  Identities=24%  Similarity=0.189  Sum_probs=116.8

Q ss_pred             EEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847          189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS  266 (542)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  266 (542)
                      +...+..+..+|... ...+++|++++|.+..++  .+.++++|++|++++|.+..+.+..|.++++|++|++++|....
T Consensus        17 ~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           17 YNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             EECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred             EECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence            333445566666422 257899999999998874  58899999999999999888877778999999999999995444


Q ss_pred             cCccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCcc--chhhcCCCCCCcEEeccCccccc
Q 037847          267 TLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSII--PHQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       267 ~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l--p~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      ..|..++.+.+|++|++++|.++.+ |..++++++|++|++++| .+..+  |.  +..+++|++|++++|.+.+
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSCCCE
T ss_pred             cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCcccc
Confidence            5577899999999999999999886 567889999999999998 45554  44  4558999999999988764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=3e-22  Score=206.00  Aligned_cols=295  Identities=16%  Similarity=0.201  Sum_probs=200.3

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~  287 (542)
                      +.++..+..+..+|.+  .++|++|++++|.++.+++..++.+++|++|++++|.....+ |..|+.+++|++|++++|.
T Consensus        13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           13 YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             TEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             cccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            3567777788888873  389999999999999887777999999999999999544455 5678999999999999999


Q ss_pred             CCcc-cHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          288 ITGL-PQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       288 i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      ++.+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+.+..|..              .+.++++|
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------~~~~l~~L  156 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--------------FFLNMRRF  156 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------GGGGCTTC
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc--------------ccCCCCcc
Confidence            9885 78899999999999999954333333 34788999999999999886543321              15566777


Q ss_pred             ceeeeEecchHHH--HHhhcC------------------------------chhhccceeEEeccccCCC----------
Q 037847          366 NVLSWSFGSSLAV--QKFLKY------------------------------PKLVSITQSVWVECGTYTR----------  403 (542)
Q Consensus       366 ~~l~~~~~~~~~~--~~l~~~------------------------------~~~~~~l~~l~l~~~~~~~----------  403 (542)
                      +.|+++.+.....  ..+...                              ......++.|++.++....          
T Consensus       157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence            7777765542211  000000                              0001234444444432100          


Q ss_pred             --CCcee-----------------------cccc--cccccceeeecccCccceeeccchhhcccccccccccCEEEEcc
Q 037847          404 --PPFNV-----------------------LHLA--YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRS  456 (542)
Q Consensus       404 --~~~~~-----------------------~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  456 (542)
                        .....                       ..+.  ..++|++|++++|.+....+..+        ..+++|+.|++++
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~  308 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--------SHFTDLEQLTLAQ  308 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--------TTCTTCCEEECTT
T ss_pred             cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc--------ccCCCCCEEECCC
Confidence              00000                       0000  11355555555555554433322        3377888888888


Q ss_pred             CCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccccc-CCCCCCCCCcce
Q 037847          457 CRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSV-YPNPQPFPKLKK  533 (542)
Q Consensus       457 c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~p~L~~  533 (542)
                      |.+  ..+..++.+++|++|+|++|.+++++.            .....+++|++|++.++. +..+ +.....+++|++
T Consensus       309 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             CcccccChhHhcCcccCCEEECCCCccCCcCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccE
Confidence            888  333457788888888888888766642            256678999999999974 5555 455677999999


Q ss_pred             EeeccCC
Q 037847          534 IQAFHCR  540 (542)
Q Consensus       534 L~i~~C~  540 (542)
                      |+++++.
T Consensus       376 L~L~~N~  382 (455)
T 3v47_A          376 LALDTNQ  382 (455)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            9998863

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=4.1e-22  Score=215.61  Aligned_cols=149  Identities=23%  Similarity=0.210  Sum_probs=124.0

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      .+...+..+..+|.... .++++|+++++.+..++.  +.++++|++|++++|.+..+++..++.+++|++|++++| .+
T Consensus         8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l   85 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-EL   85 (680)
T ss_dssp             EEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CC
T ss_pred             eeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-cc
Confidence            34445556677775332 789999999999998863  889999999999999999888888999999999999999 67


Q ss_pred             CcCcc-ccCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccc
Q 037847          266 STLPS-GISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGV  339 (542)
Q Consensus       266 ~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  339 (542)
                      ..+|. .|+.+.+|++|++++|.++.+| ..++++++|++|++++|. +...+...++++++|++|++++|.+.+.
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc
Confidence            77776 5999999999999999999876 578999999999999994 4444444488999999999999987654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=2.1e-22  Score=214.96  Aligned_cols=121  Identities=21%  Similarity=0.314  Sum_probs=89.6

Q ss_pred             EEecCcccccCC--cccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCC
Q 037847          189 LVRAGVKLTEAP--KVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP  264 (542)
Q Consensus       189 ~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  264 (542)
                      +...+..+..++  .+..+.++++|++++|.+..++  .+.++++|++|++++|.+..+++..|+++++|++|++++| .
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~  115 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-K  115 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-C
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-c
Confidence            333444444443  3566778888888888887763  3678888888888888887776666888888888888888 4


Q ss_pred             CCcCc-cccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCc
Q 037847          265 PSTLP-SGISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAF  310 (542)
Q Consensus       265 ~~~lp-~~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~  310 (542)
                      +..+| ..++.+.+|++|++++|.++.  +|..++++++|++|++++|.
T Consensus       116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            54444 668888888888888887774  68888888888888888873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=1.1e-21  Score=216.84  Aligned_cols=151  Identities=22%  Similarity=0.264  Sum_probs=124.0

Q ss_pred             eEEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcc-cccccchhhccCCCccEEEecCCC
Q 037847          187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNR-IEEITDGFFQSLSTLRVLSLRGNF  263 (542)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~  263 (542)
                      ..+......+..+|.  ...+++.|++++|.+..++  .+.++++|++|++++|. ...+++..|.++++|++|++++|.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            344556667888887  5589999999999998763  68999999999999994 456667779999999999999995


Q ss_pred             CCCcCccccCCCCCCCEEeccCCCCCc-ccHH--hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccc
Q 037847          264 PPSTLPSGISGLVSLHHLDLSSTDITG-LPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGV  339 (542)
Q Consensus       264 ~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  339 (542)
                      .....|..|+.+.+|++|++++|.++. +|..  ++++++|++|++++|......|...++++++|++|++++|.+.+.
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            444558899999999999999999987 5665  899999999999999544433433489999999999999987654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=5e-22  Score=205.64  Aligned_cols=287  Identities=16%  Similarity=0.160  Sum_probs=219.8

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~  287 (542)
                      +.++..+..+..+|.. -.++++.|++++|.++.+++..|..+++|++|++++| .+..+ |..|+.+.+|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence            4567777788888752 2468999999999999988877999999999999999 55544 7889999999999999999


Q ss_pred             CCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCc
Q 037847          288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLN  366 (542)
Q Consensus       288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  366 (542)
                      ++.+|.. +.++++|++|++++| .+..++...+.++++|++|++++|.+.+..               ...+.++++|+
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~l~~L~  155 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYIS---------------HRAFSGLNSLE  155 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEEC---------------TTSSTTCTTCC
T ss_pred             CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeC---------------hhhccCCCCCC
Confidence            9998875 689999999999999 455554445899999999999999875432               23466788999


Q ss_pred             eeeeEecchHHH--HHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccc
Q 037847          367 VLSWSFGSSLAV--QKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN  444 (542)
Q Consensus       367 ~l~~~~~~~~~~--~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  444 (542)
                      .|+++.+.....  ..+.    ....++.|++.+...  .......+..+++|++|++++|......+...        .
T Consensus       156 ~L~l~~n~l~~~~~~~l~----~l~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~  221 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALS----HLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--------L  221 (477)
T ss_dssp             EEEEESCCCSSCCHHHHT----TCTTCCEEEEESCCC--CEECTTCSCSCTTCCEEEEECCTTCCEECTTT--------T
T ss_pred             EEECCCCcCcccChhHhc----ccCCCcEEeCCCCcC--cEeChhhcccCcccceeeCCCCccccccCccc--------c
Confidence            999987753221  1121    235677888876543  12222356778999999999988765322221        1


Q ss_pred             cccccCEEEEccCCCCCcc--hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccccc-
Q 037847          445 GFRNLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSV-  521 (542)
Q Consensus       445 ~l~~L~~L~L~~c~~~~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-  521 (542)
                      ...+|++|++++|.+..++  .+..+++|++|+|++|.++.++.            .....+++|+.|.+.++ .+..+ 
T Consensus       222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~  288 (477)
T 2id5_A          222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG------------SMLHELLRLQEIQLVGG-QLAVVE  288 (477)
T ss_dssp             TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT------------TSCTTCTTCCEEECCSS-CCSEEC
T ss_pred             cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh------------hhccccccCCEEECCCC-ccceEC
Confidence            1459999999999993333  57899999999999999887753            35677999999999997 45555 


Q ss_pred             CCCCCCCCCcceEeeccCC
Q 037847          522 YPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       522 ~~~~~~~p~L~~L~i~~C~  540 (542)
                      +.....+++|++|+++++.
T Consensus       289 ~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          289 PYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             TTTBTTCTTCCEEECCSSC
T ss_pred             HHHhcCcccCCEEECCCCc
Confidence            4456679999999999873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2.1e-22  Score=219.43  Aligned_cols=305  Identities=15%  Similarity=0.142  Sum_probs=178.9

Q ss_pred             ccccceEEEeecCCcC-CCC-CCCCCCCccEEEccCcc-ccc--ccchhhccC-------CCccEEEecCCCCCCcCcc-
Q 037847          204 EWEGAKRISLTANGIG-SLS-EIPTCPRLVTLLLDGNR-IEE--ITDGFFQSL-------STLRVLSLRGNFPPSTLPS-  270 (542)
Q Consensus       204 ~~~~l~~l~l~~~~~~-~~~-~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~l-------~~L~~L~l~~~~~~~~lp~-  270 (542)
                      .+.+++.|++.+|.+. .+| .+.++++|+.|++++|. ++.  +|.. ++.+       ++|++|++++| .+..+|. 
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPAS  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCccCCh
Confidence            6788899999888754 345 47788888888888886 654  3332 3433       47888888888 4557777 


Q ss_pred             -ccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCC-CcEEeccCccccccccCCCCccc
Q 037847          271 -GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK-LEVLRLCGCGRFGVIKGKEGNVL  348 (542)
Q Consensus       271 -~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~  348 (542)
                       .++.+++|++|++++|.++.+| .++++++|++|++++| .+..+|.. +.++++ |++|++++|.+. .+|.......
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCC-cCchhhhccc
Confidence             7788888888888888777777 7777788888888777 44577765 677777 777777777765 4443322110


Q ss_pred             --------------cCCCcchhHhhc--cccCCceeeeEecchHHHH---------------------HhhcC-chh---
Q 037847          349 --------------CDGAEPLMKELL--GLKHLNVLSWSFGSSLAVQ---------------------KFLKY-PKL---  387 (542)
Q Consensus       349 --------------~~~~~~~~~~l~--~L~~L~~l~~~~~~~~~~~---------------------~l~~~-~~~---  387 (542)
                                    ....+.....+.  .+.+|+.|+++.+......                     .+... ...   
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~  722 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG  722 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence                          000011111111  1224444444433321000                     00000 000   


Q ss_pred             ----hccceeEEeccccCCCCCceecccc--cccccceeeecccCccceeeccchhhcccccccccccCEEEEcc-----
Q 037847          388 ----VSITQSVWVECGTYTRPPFNVLHLA--YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRS-----  456 (542)
Q Consensus       388 ----~~~l~~l~l~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-----  456 (542)
                          .+.++.|++.++...  .. ...+.  .+++|+.|++++|.+..++..         ...+++|+.|+|++     
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~--~l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~---------l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLT--SL-SDDFRATTLPYLSNMDVSYNCFSSFPTQ---------PLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCC--CC-CGGGSTTTCTTCCEEECCSSCCSSCCCG---------GGGCTTCCEEECCCCBCTT
T ss_pred             cccccCCccEEECCCCCCc--cc-hHHhhhccCCCcCEEEeCCCCCCccchh---------hhcCCCCCEEECCCCCCcc
Confidence                014555555554332  11 12222  556666666666666553211         13477888888866     


Q ss_pred             -CCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCC---------
Q 037847          457 -CRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN---------  524 (542)
Q Consensus       457 -c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---------  524 (542)
                       |.+  ..+..+..+++|++|+|++|.+..++.             .  .+++|+.|+|++|+ +.++...         
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~-------------~--l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~  854 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-------------K--LTPQLYILDIADNP-NISIDVTSVCPYIEAG  854 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-------------C--CCSSSCEEECCSCT-TCEEECGGGHHHHHTT
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCCCccCH-------------h--hcCCCCEEECCCCC-CCccChHHccccccch
Confidence             444  444567788888888888888766543             2  35799999999986 3333211         


Q ss_pred             CCCCCCcceEeeccCCCC
Q 037847          525 PQPFPKLKKIQAFHCRQL  542 (542)
Q Consensus       525 ~~~~p~L~~L~i~~C~~L  542 (542)
                      ...+..-+..+|.+|++|
T Consensus       855 ~~~L~~n~~~~I~gC~~L  872 (876)
T 4ecn_A          855 MYVLLYDKTQDIRGCDAL  872 (876)
T ss_dssp             CCEEECCTTSEEESCGGG
T ss_pred             heeecCCCccccCCCCCc
Confidence            111222234578899875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=3.3e-22  Score=212.51  Aligned_cols=273  Identities=16%  Similarity=0.146  Sum_probs=183.9

Q ss_pred             CCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCcccHH-hhcCCCCC
Q 037847          225 PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLR  302 (542)
Q Consensus       225 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~  302 (542)
                      ..+.+++.++++++.+..+|+..+..+++|++|++++| .+..+| ..|+.+.+|++|++++|.++.+|.. ++++++|+
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            35688999999999999999998999999999999999 555554 5899999999999999999997654 69999999


Q ss_pred             EEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhh
Q 037847          303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFL  382 (542)
Q Consensus       303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~  382 (542)
                      +|++++| .+..+|...++++++|++|++++|.+.+..|.               .+.++++|+.|+++.+.....    
T Consensus       127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------~~~~l~~L~~L~L~~N~l~~~----  186 (597)
T 3oja_B          127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD---------------TFQATTSLQNLQLSSNRLTHV----  186 (597)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT---------------TTTTCTTCCEEECTTSCCSBC----
T ss_pred             EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChh---------------hhhcCCcCcEEECcCCCCCCc----
Confidence            9999999 67788887679999999999999988654332               345666777777765542211    


Q ss_pred             cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh-----------cccccccccccCE
Q 037847          383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV-----------KKLFRNGFRNLNT  451 (542)
Q Consensus       383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~l~~L~~  451 (542)
                       .....+.++.+.+.....       ..+...++|+.|++++|.+..++.......           .......+++|+.
T Consensus       187 -~~~~l~~L~~L~l~~n~l-------~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~  258 (597)
T 3oja_B          187 -DLSLIPSLFHANVSYNLL-------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE  258 (597)
T ss_dssp             -CGGGCTTCSEEECCSSCC-------SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             -ChhhhhhhhhhhcccCcc-------ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCE
Confidence             011123344444433221       112223344444444444433221100000           0011234667777


Q ss_pred             EEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCC
Q 037847          452 VVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFP  529 (542)
Q Consensus       452 L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p  529 (542)
                      |+|++|.+  ..+..++.+++|++|+|++|.+..++.             ....+++|+.|++.+| .+..++.....++
T Consensus       259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~  324 (597)
T 3oja_B          259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFD  324 (597)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred             EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-------------ccccCCCCcEEECCCC-CCCccCcccccCC
Confidence            77777776  233456677777777777777666532             4456788888888876 4556666566678


Q ss_pred             CcceEeeccCC
Q 037847          530 KLKKIQAFHCR  540 (542)
Q Consensus       530 ~L~~L~i~~C~  540 (542)
                      +|++|++++|+
T Consensus       325 ~L~~L~L~~N~  335 (597)
T 3oja_B          325 RLENLYLDHNS  335 (597)
T ss_dssp             TCSEEECCSSC
T ss_pred             CCCEEECCCCC
Confidence            88888887764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.2e-22  Score=197.23  Aligned_cols=218  Identities=20%  Similarity=0.252  Sum_probs=122.8

Q ss_pred             CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEecc
Q 037847          228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD  307 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  307 (542)
                      .+++.|++++|.+..+++. +..+++|++|++++| .+..+|..++.+.+|++|++++|.++.+|..++++++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            4556666666666655554 555777777777777 45567766777777777777777777777777777777777777


Q ss_pred             CCcccCccchhhcC---------CCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHH
Q 037847          308 YAFHLSIIPHQLIS---------CFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAV  378 (542)
Q Consensus       308 ~~~~~~~lp~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~  378 (542)
                      +|.....+|.. +.         ++++|++|++++|.+. .+               +..+.++++|+.|+++.+...  
T Consensus       159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l---------------p~~l~~l~~L~~L~L~~N~l~--  219 (328)
T 4fcg_A          159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-SL---------------PASIANLQNLKSLKIRNSPLS--  219 (328)
T ss_dssp             EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-CC---------------CGGGGGCTTCCEEEEESSCCC--
T ss_pred             CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-cc---------------hHhhcCCCCCCEEEccCCCCC--
Confidence            76666666654 33         2566666666665543 11               122444445555555433210  


Q ss_pred             HHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCC
Q 037847          379 QKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCR  458 (542)
Q Consensus       379 ~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~  458 (542)
                                                . ....+..+++|++|++++|.+.+..+..+        ..+++|+.|++++|.
T Consensus       220 --------------------------~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--------~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          220 --------------------------A-LGPAIHHLPKLEELDLRGCTALRNYPPIF--------GGRAPLKRLILKDCS  264 (328)
T ss_dssp             --------------------------C-CCGGGGGCTTCCEEECTTCTTCCBCCCCT--------TCCCCCCEEECTTCT
T ss_pred             --------------------------c-CchhhccCCCCCEEECcCCcchhhhHHHh--------cCCCCCCEEECCCCC
Confidence                                      0 01124445666666666666555333222        225666666666665


Q ss_pred             C--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecc
Q 037847          459 G--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMW  513 (542)
Q Consensus       459 ~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  513 (542)
                      .  ..+..++.+++|++|+|++|.+....            |.....+++|+.+.+.
T Consensus       265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~i------------P~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRL------------PSLIAQLPANCIILVP  309 (328)
T ss_dssp             TCCBCCTTGGGCTTCCEEECTTCTTCCCC------------CGGGGGSCTTCEEECC
T ss_pred             chhhcchhhhcCCCCCEEeCCCCCchhhc------------cHHHhhccCceEEeCC
Confidence            5  33334566666666666664332221            2244555666665554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=5.4e-23  Score=200.29  Aligned_cols=248  Identities=19%  Similarity=0.161  Sum_probs=179.4

Q ss_pred             ccceEEEeecCCcCC---CC-CCCCCCCccEEEccC-cccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          206 EGAKRISLTANGIGS---LS-EIPTCPRLVTLLLDG-NRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      .+++.+++.++.+..   +| .+.++++|++|++++ |.+....+..+..+++|++|++++|.....+|..++.+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467888888888874   43 477888888888885 7776555555788888888888888444477888888888888


Q ss_pred             EeccCCCCC-cccHHhhcCCCCCEEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847          281 LDLSSTDIT-GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE  358 (542)
Q Consensus       281 L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (542)
                      |++++|.++ .+|..++.+++|++|++++|.....+|.. ++.++ +|++|++++|.+.+.+|               ..
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~---------------~~  193 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP---------------PT  193 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC---------------GG
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC---------------hH
Confidence            888888877 47888888888888888888544477776 77777 88888888887764433               22


Q ss_pred             hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847          359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV  438 (542)
Q Consensus       359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  438 (542)
                      +..++ |+.|+++.+...                            ......+..+++|+.|++++|.+....+.     
T Consensus       194 ~~~l~-L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----  239 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLE----------------------------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-----  239 (313)
T ss_dssp             GGGCC-CSEEECCSSEEE----------------------------ECCGGGCCTTSCCSEEECCSSEECCBGGG-----
T ss_pred             HhCCc-ccEEECcCCccc----------------------------CcCCHHHhcCCCCCEEECCCCceeeecCc-----
Confidence            34444 666666544311                            00123455678899999999888653222     


Q ss_pred             cccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          439 KKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       439 ~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                          ...+++|++|++++|.+  ..+..+..+++|++|+|++|.+.....             ....+++|+.|.+.+++
T Consensus       240 ----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-------------~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          240 ----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-------------QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ----CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-------------CSTTGGGSCGGGTCSSS
T ss_pred             ----ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC-------------CCccccccChHHhcCCC
Confidence                13378899999999988  556668889999999999988874432             23678889999998887


Q ss_pred             cccc
Q 037847          517 NLKS  520 (542)
Q Consensus       517 ~l~~  520 (542)
                      .+..
T Consensus       303 ~lc~  306 (313)
T 1ogq_A          303 CLCG  306 (313)
T ss_dssp             EEES
T ss_pred             CccC
Confidence            6654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=1.1e-22  Score=222.45  Aligned_cols=284  Identities=20%  Similarity=0.144  Sum_probs=198.7

Q ss_pred             CCCCccEEEccCcccc-cccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCC-cccHH-hhcCCCCC
Q 037847          226 TCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT-GLPQE-LKALEKLR  302 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~-~lp~~-i~~l~~L~  302 (542)
                      .+++|++|++++|.+. .++..+...+++|++|++++|.....+|..++.+.+|++|++++|.+. .+|.. ++++++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            4555666666666555 333332233488888888888544578888999999999999999887 68876 88999999


Q ss_pred             EEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccCCCCcc----------c-cCCCcchhHhhccccCCceeee
Q 037847          303 YLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKGKEGNV----------L-CDGAEPLMKELLGLKHLNVLSW  370 (542)
Q Consensus       303 ~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~l~~L~~L~~l~~  370 (542)
                      +|++++|.....+|.. +.+++ +|++|++++|.+.+.+|......          . +......+..+.++++|+.|++
T Consensus       347 ~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  425 (768)
T 3rgz_A          347 VLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL  425 (768)
T ss_dssp             EEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred             EEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence            9999999555577876 66666 88999998888776655433210          0 0111134456778888998888


Q ss_pred             EecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccC
Q 037847          371 SFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLN  450 (542)
Q Consensus       371 ~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~  450 (542)
                      +.+....  .......-.+.++.|++..+...  ......+..+++|++|++++|.+....+..+        ..+++|+
T Consensus       426 s~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--------~~l~~L~  493 (768)
T 3rgz_A          426 SFNYLSG--TIPSSLGSLSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGL--------SNCTNLN  493 (768)
T ss_dssp             CSSEEES--CCCGGGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--------GGCTTCC
T ss_pred             cCCcccC--cccHHHhcCCCCCEEECCCCccc--CcCCHHHcCCCCceEEEecCCcccCcCCHHH--------hcCCCCC
Confidence            8765321  11111222356788888776531  1223456778999999999999886544443        3489999


Q ss_pred             EEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCC
Q 037847          451 TVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPF  528 (542)
Q Consensus       451 ~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  528 (542)
                      .|++++|.+  ..+.+++.+++|++|+|++|.+....            +.....+++|+.|++.+|+-...+|......
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~------------p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI------------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC------------CGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC------------CHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            999999999  56667899999999999999887543            2367789999999999987655776655444


Q ss_pred             CCcceE
Q 037847          529 PKLKKI  534 (542)
Q Consensus       529 p~L~~L  534 (542)
                      ..+..+
T Consensus       562 ~~~~~~  567 (768)
T 3rgz_A          562 SGKIAA  567 (768)
T ss_dssp             TTCBCC
T ss_pred             cchhhh
Confidence            444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=2.4e-22  Score=195.77  Aligned_cols=248  Identities=17%  Similarity=0.156  Sum_probs=197.7

Q ss_pred             CCccEEEccCccccc--ccchhhccCCCccEEEecC-CCCCCcCccccCCCCCCCEEeccCCCCC-cccHHhhcCCCCCE
Q 037847          228 PRLVTLLLDGNRIEE--ITDGFFQSLSTLRVLSLRG-NFPPSTLPSGISGLVSLHHLDLSSTDIT-GLPQELKALEKLRY  303 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~  303 (542)
                      .+++.|+++++.+..  ..+..+..+++|++|++++ |.....+|..++.+++|++|++++|.++ .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999875  4445599999999999995 6456688999999999999999999998 58999999999999


Q ss_pred             EeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcccc-CCceeeeEecchHHHHHhh
Q 037847          304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK-HLNVLSWSFGSSLAVQKFL  382 (542)
Q Consensus       304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~l~~~~~~~~~~~~l~  382 (542)
                      |++++|.....+|.. ++.+++|++|++++|.+.+.+|               ..+..+. +|+.|+++.+...      
T Consensus       130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p---------------~~l~~l~~~L~~L~L~~N~l~------  187 (313)
T 1ogq_A          130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP---------------DSYGSFSKLFTSMTISRNRLT------  187 (313)
T ss_dssp             EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECC---------------GGGGCCCTTCCEEECCSSEEE------
T ss_pred             EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCC---------------HHHhhhhhcCcEEECcCCeee------
Confidence            999999655578876 8999999999999998865443               3456666 7888888755311      


Q ss_pred             cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC
Q 037847          383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD  461 (542)
Q Consensus       383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~  461 (542)
                                     +       .....+..++ |++|++++|.+....+..+        ..+++|+.|++++|.+ ..
T Consensus       188 ---------------~-------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          188 ---------------G-------KIPPTFANLN-LAFVDLSRNMLEGDASVLF--------GSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             ---------------E-------ECCGGGGGCC-CSEEECCSSEEEECCGGGC--------CTTSCCSEEECCSSEECCB
T ss_pred             ---------------c-------cCChHHhCCc-ccEEECcCCcccCcCCHHH--------hcCCCCCEEECCCCceeee
Confidence                           0       0012344444 9999999998876544433        3489999999999999 67


Q ss_pred             cchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCCC
Q 037847          462 LTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQ  541 (542)
Q Consensus       462 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~  541 (542)
                      ++.+..+++|++|+|++|.+....            +.....+++|++|++.++.--..+|.. ..+++|+.|++.+.+.
T Consensus       237 ~~~~~~l~~L~~L~Ls~N~l~~~~------------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          237 LGKVGLSKNLNGLDLRNNRIYGTL------------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGGCCCCTTCCEEECCSSCCEECC------------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             cCcccccCCCCEEECcCCcccCcC------------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            777888999999999999987443            236677999999999998544466554 7899999999988763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=6.7e-22  Score=196.24  Aligned_cols=262  Identities=19%  Similarity=0.234  Sum_probs=139.3

Q ss_pred             CcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847          193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS  270 (542)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~  270 (542)
                      +..+..+|... ..+++.|++.++.+..++.  +.++++|++|++++|.++.+++..+..+++|++|++++| .+..+|.
T Consensus        40 ~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~  117 (353)
T 2z80_A           40 SGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSS  117 (353)
T ss_dssp             STTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred             CCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence            33444444311 1356666666666665542  556666666666666666555555666666666666666 4445554


Q ss_pred             c-cCCCCCCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847          271 G-ISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV  347 (542)
Q Consensus       271 ~-i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  347 (542)
                      . ++.+++|++|++++|.++.+|.  .+.++++|++|++++|..+..++...++++++|++|++++|.+.+..       
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------  190 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-------  190 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-------
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-------
Confidence            4 5666666666666666666654  45566666666666664444444333566666666666666544321       


Q ss_pred             ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847          348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL  427 (542)
Q Consensus       348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  427 (542)
                              +..+..+++|+.|+++.+.....                            ....+..+++|++|++++|.+
T Consensus       191 --------~~~l~~l~~L~~L~l~~n~l~~~----------------------------~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          191 --------PKSLKSIQNVSHLILHMKQHILL----------------------------LEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             --------TTTTTTCSEEEEEEEECSCSTTH----------------------------HHHHHHHTTTEEEEEEESCBC
T ss_pred             --------HHHHhccccCCeecCCCCccccc----------------------------hhhhhhhcccccEEECCCCcc
Confidence                    12244455555555554432111                            011122356666666666666


Q ss_pred             cceeeccchhhcccccccccccCEEEEccCCC------CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcC
Q 037847          428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG------KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEH  501 (542)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~------~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  501 (542)
                      ...++....     .......++.++++++.+      ..+..+..+++|++|+|++|.++.++.            ...
T Consensus       235 ~~~~~~~l~-----~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------------~~~  297 (353)
T 2z80_A          235 DTFHFSELS-----TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------------GIF  297 (353)
T ss_dssp             TTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------------TTT
T ss_pred             ccccccccc-----cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------------HHH
Confidence            554332221     012244556666666555      122335566667777776666665532            123


Q ss_pred             CCCCccceeecccCC
Q 037847          502 NFFPRLEYLTMWRGT  516 (542)
Q Consensus       502 ~~~~~L~~L~l~~c~  516 (542)
                      ..+++|++|++.+++
T Consensus       298 ~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          298 DRLTSLQKIWLHTNP  312 (353)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             hcCCCCCEEEeeCCC
Confidence            456666666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=2.6e-21  Score=192.06  Aligned_cols=270  Identities=22%  Similarity=0.218  Sum_probs=203.3

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~  287 (542)
                      ...+..++.++.+|.- -.++|++|++++|.++.+++..+..+++|++|++++| .+..+ |..++.+.+|++|++++|.
T Consensus        34 ~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           34 GICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             SEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc
Confidence            3467788888888752 2368999999999999988877999999999999999 55555 5679999999999999999


Q ss_pred             CCcccHH-hhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      ++.+|.. ++++++|++|++++| .+..+|. ..+.++++|++|++++|...+.++              ...+.++++|
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------~~~~~~l~~L  176 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--------------RKDFAGLTFL  176 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--------------TTTTTTCCEE
T ss_pred             CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC--------------HHHccCCCCC
Confidence            9999877 899999999999999 6777877 458899999999999985332221              2345677888


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.|+++.+...                            ......+..+++|++|++++|.+..++....        ..
T Consensus       177 ~~L~l~~n~l~----------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~  220 (353)
T 2z80_A          177 EELEIDASDLQ----------------------------SYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DV  220 (353)
T ss_dssp             EEEEEEETTCC----------------------------EECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HH
T ss_pred             CEEECCCCCcC----------------------------ccCHHHHhccccCCeecCCCCccccchhhhh--------hh
Confidence            88888765421                            0112345668899999999998866433222        23


Q ss_pred             ccccCEEEEccCCC-C-Cc---chhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccc
Q 037847          446 FRNLNTVVLRSCRG-K-DL---TWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKS  520 (542)
Q Consensus       446 l~~L~~L~L~~c~~-~-~~---~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  520 (542)
                      +++|+.|++++|.+ . .+   +.....+.++.++++++.+.+.....    +    +.....+++|+.|++.++ .+++
T Consensus       221 ~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~----l----~~~l~~l~~L~~L~Ls~N-~l~~  291 (353)
T 2z80_A          221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ----V----MKLLNQISGLLELEFSRN-QLKS  291 (353)
T ss_dssp             TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH----H----HHHHHTCTTCCEEECCSS-CCCC
T ss_pred             cccccEEECCCCccccccccccccccccchhhccccccccccCcchhh----h----HHHHhcccCCCEEECCCC-CCCc
Confidence            78999999999988 2 22   22334677888888886655432100    0    124567999999999997 6788


Q ss_pred             cCCCC-CCCCCcceEeeccCC
Q 037847          521 VYPNP-QPFPKLKKIQAFHCR  540 (542)
Q Consensus       521 ~~~~~-~~~p~L~~L~i~~C~  540 (542)
                      ++... ..+++|++|++++++
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCHHHHhcCCCCCEEEeeCCC
Confidence            88775 689999999999886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.87  E-value=2.3e-21  Score=203.01  Aligned_cols=125  Identities=22%  Similarity=0.183  Sum_probs=109.0

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~  287 (542)
                      ++++++++.+..+|.... ++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..|+.+++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence            578999999999885322 89999999999999988877999999999999999 55555 7899999999999999999


Q ss_pred             CCcccHHhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccc
Q 037847          288 ITGLPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       288 i~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      ++.+|..  .+++|++|++++|.... .+|.. ++++++|++|++++|.+.+
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch
Confidence            9999987  89999999999994433 35665 8999999999999998754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=6.2e-21  Score=195.30  Aligned_cols=302  Identities=16%  Similarity=0.169  Sum_probs=209.3

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST  267 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  267 (542)
                      .+...+..+..+|.+..+.++++|++.+|.+..++ +..+++|++|++++|.++.++   ++.+++|++|++++| .+..
T Consensus        46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~  120 (457)
T 3bz5_A           46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTK  120 (457)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSC
T ss_pred             EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCe
Confidence            44445556667777888899999999999999986 899999999999999988763   789999999999999 6777


Q ss_pred             CccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847          268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV  347 (542)
Q Consensus       268 lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  347 (542)
                      +|  ++.+++|++|++++|.++.+|  ++.+++|++|++++|..+..++   ++.+++|++|++++|.+.+. |      
T Consensus       121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~------  186 (457)
T 3bz5_A          121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D------  186 (457)
T ss_dssp             CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C------
T ss_pred             ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c------
Confidence            76  899999999999999999985  8899999999999997777763   78899999999999987531 1      


Q ss_pred             ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847          348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL  427 (542)
Q Consensus       348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  427 (542)
                                 +..+++|+.|+++.+.....    . ......++.|++.++....  .   .+..+++|+.|++++|.+
T Consensus       187 -----------l~~l~~L~~L~l~~N~l~~~----~-l~~l~~L~~L~Ls~N~l~~--i---p~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          187 -----------VSQNKLLNRLNCDTNNITKL----D-LNQNIQLTFLDCSSNKLTE--I---DVTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             -----------CTTCTTCCEEECCSSCCSCC----C-CTTCTTCSEEECCSSCCSC--C---CCTTCTTCSEEECCSSCC
T ss_pred             -----------cccCCCCCEEECcCCcCCee----c-cccCCCCCEEECcCCcccc--c---CccccCCCCEEEeeCCcC
Confidence                       55667788888776654322    1 2223566777777665422  1   156778899999999888


Q ss_pred             cceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccc-hhhhcccccccccccccCCcCCCCC
Q 037847          428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT-MEEIISVEKLSDISEVIGSEHNFFP  505 (542)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~  505 (542)
                      ..+++..+.....+. ....+|+.|++++|.. ..++ .+.+++|+.|++++|. ++.++.  ....+...   ....++
T Consensus       246 ~~~~~~~l~~L~~L~-l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L---~l~~~~  318 (457)
T 3bz5_A          246 TELDVSTLSKLTTLH-CIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC--QAAGITEL---DLSQNP  318 (457)
T ss_dssp             SCCCCTTCTTCCEEE-CTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCC---CCTTCT
T ss_pred             CCcCHHHCCCCCEEe-ccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc--CCCcceEe---chhhcc
Confidence            775543322111000 0112445555555554 3332 4567888888888854 333321  11111111   344556


Q ss_pred             ccceeecccCCcccccCCCCCCCCCcceEeeccC
Q 037847          506 RLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHC  539 (542)
Q Consensus       506 ~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C  539 (542)
                      +|+.|++.++ .++.+  ....+++|+.|++++.
T Consensus       319 ~L~~L~L~~N-~l~~l--~l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          319 KLVYLYLNNT-ELTEL--DVSHNTKLKSLSCVNA  349 (457)
T ss_dssp             TCCEEECTTC-CCSCC--CCTTCTTCSEEECCSS
T ss_pred             cCCEEECCCC-ccccc--ccccCCcCcEEECCCC
Confidence            7777777664 35554  2556777777777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=2.2e-21  Score=188.54  Aligned_cols=242  Identities=21%  Similarity=0.255  Sum_probs=167.3

Q ss_pred             EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC---ccccCCCCCCCEEeccCC
Q 037847          210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL---PSGISGLVSLHHLDLSST  286 (542)
Q Consensus       210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l---p~~i~~l~~L~~L~l~~~  286 (542)
                      .++..++.+..+|. .-.++++.|++++|.++.+++..+..+++|++|++++| .+...   |..+..+.+|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC
Confidence            45666666766664 22367888888888887777776778888888888888 44433   556667788888888888


Q ss_pred             CCCcccHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          287 DITGLPQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      .++.+|..+..+++|++|++++| .+..++. ..+..+++|++|++++|.+.+..+               ..+..+++|
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~L  152 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---------------GIFNGLSSL  152 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECST---------------TTTTTCTTC
T ss_pred             ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccch---------------hhcccCcCC
Confidence            88888777888888888888887 4444543 337778888888888877643222               224555666


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.|+++.+....                           ......+..+++|++|++++|.+..+++..+.        .
T Consensus       153 ~~L~l~~n~l~~---------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~  197 (306)
T 2z66_A          153 EVLKMAGNSFQE---------------------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--------S  197 (306)
T ss_dssp             CEEECTTCEEGG---------------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTT--------T
T ss_pred             CEEECCCCcccc---------------------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--------C
Confidence            666665443110                           00112355678899999999988876554442        3


Q ss_pred             ccccCEEEEccCCC-CC-cchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCC-ccceeecccCC
Q 037847          446 FRNLNTVVLRSCRG-KD-LTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFP-RLEYLTMWRGT  516 (542)
Q Consensus       446 l~~L~~L~L~~c~~-~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~  516 (542)
                      +++|+.|++++|.+ .. ...+..+++|++|+|++|.+.....            .....++ +|+.|++.+++
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------------QELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS------------SSCCCCCTTCCEEECTTCC
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH------------HHHHhhhccCCEEEccCCC
Confidence            78899999999988 32 3357788999999999988876643            2455564 89999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=6e-21  Score=201.59  Aligned_cols=127  Identities=24%  Similarity=0.263  Sum_probs=109.6

Q ss_pred             ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEecc
Q 037847          206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLS  284 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~  284 (542)
                      ...++++++++.++.+|... .+++++|++++|.+..+++..|..+++|++|++++| .+..+ |..|+.+++|++|+++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence            34589999999999988622 389999999999999998877999999999999999 55555 7789999999999999


Q ss_pred             CCCCCcccHHhhcCCCCCEEeccCCcccCccc--hhhcCCCCCCcEEeccCccccc
Q 037847          285 STDITGLPQELKALEKLRYLNLDYAFHLSIIP--HQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       285 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      +|.++.+|..  .+++|++|++++| .+..+|  .. ++++++|++|++++|.+.+
T Consensus       109 ~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          109 HNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             TSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred             CCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc
Confidence            9999999987  8999999999999 566554  44 8999999999999998754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=3.1e-21  Score=203.37  Aligned_cols=164  Identities=16%  Similarity=0.132  Sum_probs=97.7

Q ss_pred             ccccCCceeeeEecchHHHH-HhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccch--
Q 037847          360 LGLKHLNVLSWSFGSSLAVQ-KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTE--  436 (542)
Q Consensus       360 ~~L~~L~~l~~~~~~~~~~~-~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--  436 (542)
                      ..+++|+.|+++.+...... .........+.++.|++.++...........+..+++|++|++++|.+..++.....  
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  410 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE  410 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence            46888888888877643211 111112233556777777654311110012356677888888888877654321110  


Q ss_pred             h----------hcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCc
Q 037847          437 E----------VKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPR  506 (542)
Q Consensus       437 ~----------~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  506 (542)
                      .          ...++...+++|+.|++++|.+...+  ..+++|++|+|++|.++.++.              ...+++
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~--------------~~~l~~  474 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPD--------------ASLFPV  474 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCC--------------GGGCTT
T ss_pred             cccEEECCCCCcccccchhcCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCC--------------cccCcc
Confidence            0          00011112346666666666652221  467888888888888776542              245889


Q ss_pred             cceeecccCCcccccCCC-CCCCCCcceEeeccCC
Q 037847          507 LEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAFHCR  540 (542)
Q Consensus       507 L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~~C~  540 (542)
                      |+.|++.++ .++.++.. ...+++|++|++++++
T Consensus       475 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          475 LLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence            999999986 56666554 5678999999998876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=9.2e-21  Score=194.56  Aligned_cols=130  Identities=26%  Similarity=0.341  Sum_probs=73.8

Q ss_pred             ccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEe
Q 037847          206 EGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLD  282 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~  282 (542)
                      .+++.|++.+|.+..++  .+.++++|+.|++++|.+..+++..|.++++|++|++++| .+..+|.. ++.+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence            45566666666555542  3555666666666666555555555556666666666666 34444432 55566666666


Q ss_pred             ccCCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847          283 LSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       283 l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                      +++|.++.+|. .+.++++|++|++++|..+..+|...+.++++|++|++++|.+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            66666655543 3555666666666665555555554455566666666665554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.1e-20  Score=193.38  Aligned_cols=236  Identities=22%  Similarity=0.244  Sum_probs=141.7

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP  269 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp  269 (542)
                      .+..+..+|... ..+++.|++.+|.+..++  .+.++++|++|++++|.+..+++..|.++++|++|++++| .+..+|
T Consensus        51 ~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~  128 (440)
T 3zyj_A           51 VRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIP  128 (440)
T ss_dssp             CSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCC
T ss_pred             CCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeC
Confidence            334445555322 256677777777776653  4667777777777777776666666777777777777777 455554


Q ss_pred             c-ccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847          270 S-GISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV  347 (542)
Q Consensus       270 ~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  347 (542)
                      . .+..+.+|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.. +|      
T Consensus       129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~------  201 (440)
T 3zyj_A          129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP------  201 (440)
T ss_dssp             TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC------
T ss_pred             HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc------
Confidence            4 46677777777777777776554 466677777777777656666666556677777777777766531 11      


Q ss_pred             ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847          348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL  427 (542)
Q Consensus       348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  427 (542)
                                .+..+++|+.|+++.+...                            ......+..+++|++|++++|.+
T Consensus       202 ----------~~~~l~~L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          202 ----------NLTPLIKLDELDLSGNHLS----------------------------AIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             ----------CCTTCSSCCEEECTTSCCC----------------------------EECTTTTTTCTTCCEEECTTCCC
T ss_pred             ----------ccCCCcccCEEECCCCccC----------------------------ccChhhhccCccCCEEECCCCce
Confidence                      1444555555555433210                            01112344566677777777666


Q ss_pred             cceeeccchhhcccccccccccCEEEEccCCC-CCc-chhhhccCcceEEEeccchh
Q 037847          428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDL-TWLVFVQNLKQLNMQGFTME  482 (542)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~-~~l~~l~~L~~L~L~~~~l~  482 (542)
                      ..++...+.        .+++|+.|+|++|.+ ..+ ..+..+++|+.|+|++|.+.
T Consensus       244 ~~~~~~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          244 QVIERNAFD--------NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CEECTTSST--------TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             eEEChhhhc--------CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            655443332        256677777777666 222 22456667777777666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=8.8e-21  Score=205.19  Aligned_cols=304  Identities=14%  Similarity=0.094  Sum_probs=192.8

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI  288 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i  288 (542)
                      +.++.+++.+..+|... .+++++|++++|.++.+++..|..+++|++|++++|......|..++.+++|++|++++|.+
T Consensus         7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred             CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence            46778888888887532 27999999999999999988899999999999999954455577889999999999999999


Q ss_pred             CcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCce
Q 037847          289 TGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV  367 (542)
Q Consensus       289 ~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~  367 (542)
                      +.+|. .++++++|++|++++| .+..+|...++++++|++|++++|.+.+..|.               .+.++++|+.
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------~~~~l~~L~~  149 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---------------TQVQLENLQE  149 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC---------------SSSCCTTCCE
T ss_pred             CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCch---------------hhcccccCCE
Confidence            99987 5999999999999999 56677755589999999999999987654332               2455666777


Q ss_pred             eeeEecchHH--HHHhhcCchhhccceeEEeccccCCCCCceeccccc---------------------------ccccc
Q 037847          368 LSWSFGSSLA--VQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY---------------------------MENLQ  418 (542)
Q Consensus       368 l~~~~~~~~~--~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~---------------------------l~~L~  418 (542)
                      |+++.+....  ...+..  .....++.+++..+....  .....+..                           .++|+
T Consensus       150 L~L~~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~  225 (680)
T 1ziw_A          150 LLLSNNKIQALKSEELDI--FANSSLKKLELSSNQIKE--FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR  225 (680)
T ss_dssp             EECCSSCCCCBCHHHHGG--GTTCEESEEECTTCCCCC--BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred             EEccCCcccccCHHHhhc--cccccccEEECCCCcccc--cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence            7666543211  011000  001344555554432111  00011111                           14556


Q ss_pred             eeeecccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccc-----
Q 037847          419 ELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS-----  491 (542)
Q Consensus       419 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-----  491 (542)
                      +|++++|.+....+..+..      ...++|+.|++++|.+  ..+..++.+++|++|++++|.+..+....+..     
T Consensus       226 ~L~L~~n~l~~~~~~~~~~------l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (680)
T 1ziw_A          226 NLSLSNSQLSTTSNTTFLG------LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR  299 (680)
T ss_dssp             EEECTTSCCCEECTTTTGG------GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred             EEEccCCcccccChhHhhc------cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence            6666666555433322211      0113366666666666  22234566666666666666555443211000     


Q ss_pred             ----------------ccccccCCcCCCCCccceeecccCCcccccC-CCCCCCCCcceEeeccCC
Q 037847          492 ----------------DISEVIGSEHNFFPRLEYLTMWRGTNLKSVY-PNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       492 ----------------~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~p~L~~L~i~~C~  540 (542)
                                      .++.........+++|++|++.++. +..++ .....+++|++|++++|.
T Consensus       300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCc
Confidence                            0000001134556777777777753 44433 235568899999988763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=3.7e-21  Score=188.49  Aligned_cols=223  Identities=19%  Similarity=0.269  Sum_probs=171.0

Q ss_pred             ccceEEEeecCCcCCCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEecc
Q 037847          206 EGAKRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS  284 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~  284 (542)
                      ..++.|++.++.+..+|. +.++++|++|++++|.+..++.. ++.+++|++|++++| .+..+|..++.+.+|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence            567888888888888764 67788899999998888866554 788889999999988 566888888888999999998


Q ss_pred             CC-CCCcccHHhhc---------CCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847          285 ST-DITGLPQELKA---------LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP  354 (542)
Q Consensus       285 ~~-~i~~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  354 (542)
                      +| .+..+|..++.         +++|++|++++| .+..+|.. ++++++|++|++++|.+.+                
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~l~~----------------  220 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSA----------------  220 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSCCCC----------------
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCCCCc----------------
Confidence            86 44557777654         889999999888 56688876 7888899999998887653                


Q ss_pred             hhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeecc
Q 037847          355 LMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS  434 (542)
Q Consensus       355 ~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  434 (542)
                      .+..+..+++|+.|+++.+...                            ......+..+++|++|++++|...+..+..
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~  272 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTAL----------------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLD  272 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTC----------------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred             CchhhccCCCCCEEECcCCcch----------------------------hhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence            1224667778887777654321                            011224567889999999999887744433


Q ss_pred             chhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhh
Q 037847          435 TEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       435 ~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                      +        ..+++|+.|+|++|..  ..+..++++++|+.+++..+.+..+
T Consensus       273 ~--------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          273 I--------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             G--------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             h--------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence            3        3489999999999988  6777899999999999988665544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=209.08  Aligned_cols=291  Identities=16%  Similarity=0.162  Sum_probs=202.4

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~  287 (542)
                      +..+.+++.+..+|.  -.+++++|++++|.++.+.+..|..+++|++|++++|.....+ |..|+++.+|++|++++|.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            456778888999988  6689999999999999888777999999999999999666666 7789999999999999999


Q ss_pred             CCcc-cHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          288 ITGL-PQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       288 i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      ++.+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+.+..+              ...++++++|
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--------------~~~~~~L~~L  150 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--------------HPSFGKLNSL  150 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--------------CGGGGTCSSC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--------------chhHhhCCCC
Confidence            9986 88899999999999999954444443 347899999999999998764321              1346778888


Q ss_pred             ceeeeEecchHHH--HHhhcCchhhccceeEEeccccCCCCCceeccccc------------------------------
Q 037847          366 NVLSWSFGSSLAV--QKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY------------------------------  413 (542)
Q Consensus       366 ~~l~~~~~~~~~~--~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~------------------------------  413 (542)
                      +.|+++.+.....  ..+....  ...++.+.+..+......  ...+..                              
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRV--SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCC--CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             CEEECCCCcCCeeCHHHccccc--CCccceEECCCCcccccc--ccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence            8888876542110  0000000  023344444332211000  000011                              


Q ss_pred             --------------------------------------ccccceeeecccCccceeeccchhhcccccccccccCEEEEc
Q 037847          414 --------------------------------------MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR  455 (542)
Q Consensus       414 --------------------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~  455 (542)
                                                            .++|+.|++++|.+..+.+..+        ..+++|+.|+|+
T Consensus       227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~  298 (844)
T 3j0a_A          227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--------ETLKDLKVLNLA  298 (844)
T ss_dssp             TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--------SSCCCCCEEEEE
T ss_pred             hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--------hcCCCCCEEECC
Confidence                                                  1345555555555544333222        336778888888


Q ss_pred             cCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCC-CCCCCCcc
Q 037847          456 SCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLK  532 (542)
Q Consensus       456 ~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~  532 (542)
                      +|.+  ..+..+..+++|++|+|++|.++.+..            .....+++|+.|++.++ .+..++.. ...+++|+
T Consensus       299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~  365 (844)
T 3j0a_A          299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYS------------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQ  365 (844)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS------------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCC
T ss_pred             CCcCCCCChHHhcCCCCCCEEECCCCCCCccCH------------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCC
Confidence            8877  233456778888888888877766532            36677899999999987 56666543 55689999


Q ss_pred             eEeeccCC
Q 037847          533 KIQAFHCR  540 (542)
Q Consensus       533 ~L~i~~C~  540 (542)
                      +|+++++.
T Consensus       366 ~L~Ls~N~  373 (844)
T 3j0a_A          366 TLDLRDNA  373 (844)
T ss_dssp             EEEEETCC
T ss_pred             EEECCCCC
Confidence            99998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=3.9e-20  Score=181.73  Aligned_cols=263  Identities=17%  Similarity=0.167  Sum_probs=196.2

Q ss_pred             CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEe
Q 037847          228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLN  305 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~  305 (542)
                      .+++.++++++.++.+|...   .++|++|++++| .+..+|. .++.+++|++|++++|.++.+ |..++++++|++|+
T Consensus        31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            47899999999888877652   378999999999 5666654 799999999999999999987 88899999999999


Q ss_pred             ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCc
Q 037847          306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP  385 (542)
Q Consensus       306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~  385 (542)
                      +++| .+..+|.. +.  ++|++|++++|.+.+.               ....+.++++|+.|+++.+............
T Consensus       107 Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  167 (330)
T 1xku_A          107 LSKN-QLKELPEK-MP--KTLQELRVHENEITKV---------------RKSVFNGLNQMIVVELGTNPLKSSGIENGAF  167 (330)
T ss_dssp             CCSS-CCSBCCSS-CC--TTCCEEECCSSCCCBB---------------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred             CCCC-cCCccChh-hc--ccccEEECCCCccccc---------------CHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence            9999 67788875 33  7999999999987532               2345778899999999876543211111222


Q ss_pred             hhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC-cc
Q 037847          386 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD-LT  463 (542)
Q Consensus       386 ~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~-~~  463 (542)
                      .-...++.+++.++.....+.   .+  .++|++|++++|.+..+.+..+        ..+++|++|++++|.+ .. ..
T Consensus       168 ~~l~~L~~L~l~~n~l~~l~~---~~--~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~  234 (330)
T 1xku_A          168 QGMKKLSYIRIADTNITTIPQ---GL--PPSLTELHLDGNKITKVDAASL--------KGLNNLAKLGLSFNSISAVDNG  234 (330)
T ss_dssp             GGCTTCCEEECCSSCCCSCCS---SC--CTTCSEEECTTSCCCEECTGGG--------TTCTTCCEEECCSSCCCEECTT
T ss_pred             cCCCCcCEEECCCCccccCCc---cc--cccCCEEECCCCcCCccCHHHh--------cCCCCCCEEECCCCcCceeChh
Confidence            334567778877665322111   11  2789999999998887654444        3378999999999988 32 33


Q ss_pred             hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCC-------CCCCcceEee
Q 037847          464 WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQ-------PFPKLKKIQA  536 (542)
Q Consensus       464 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-------~~p~L~~L~i  536 (542)
                      .+..+++|++|+|++|.++.++.             ....+++|++|++.++ .++.++....       ..++|+.|++
T Consensus       235 ~~~~l~~L~~L~L~~N~l~~lp~-------------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l  300 (330)
T 1xku_A          235 SLANTPHLRELHLNNNKLVKVPG-------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL  300 (330)
T ss_dssp             TGGGSTTCCEEECCSSCCSSCCT-------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             hccCCCCCCEEECCCCcCccCCh-------------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence            58889999999999998887643             5677899999999986 4666654321       2578888888


Q ss_pred             ccCC
Q 037847          537 FHCR  540 (542)
Q Consensus       537 ~~C~  540 (542)
                      .+-|
T Consensus       301 ~~N~  304 (330)
T 1xku_A          301 FSNP  304 (330)
T ss_dssp             CSSS
T ss_pred             ecCc
Confidence            7754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=4e-20  Score=189.79  Aligned_cols=242  Identities=21%  Similarity=0.244  Sum_probs=187.7

Q ss_pred             ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCC
Q 037847          208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSST  286 (542)
Q Consensus       208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~  286 (542)
                      ...++..+..+..+|.- -.++++.|++++|.+..+++..|..+++|++|++++| .+..+ |..|..+.+|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence            45677777777777742 2378999999999999988888999999999999999 45544 578899999999999999


Q ss_pred             CCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          287 DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       287 ~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      .++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|...+.++.              ..+.++++|
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------~~~~~l~~L  198 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISE--------------GAFEGLFNL  198 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT--------------TTTTTCTTC
T ss_pred             cCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccCh--------------hhccCCCCC
Confidence            99998765 788999999999999 67788876689999999999998766544332              235567777


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.|+++.+...                              ....+..+++|++|++++|.+..+.+..+.        .
T Consensus       199 ~~L~L~~n~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~  240 (452)
T 3zyi_A          199 KYLNLGMCNIK------------------------------DMPNLTPLVGLEELEMSGNHFPEIRPGSFH--------G  240 (452)
T ss_dssp             CEEECTTSCCS------------------------------SCCCCTTCTTCCEEECTTSCCSEECGGGGT--------T
T ss_pred             CEEECCCCccc------------------------------ccccccccccccEEECcCCcCcccCccccc--------C
Confidence            77777644311                              012355678899999999988876555443        3


Q ss_pred             ccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          446 FRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       446 l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                      +++|+.|++++|.+  ..+..+..+++|++|+|++|.++.++.            .....+++|+.|++.+++
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH------------DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred             ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh------------HHhccccCCCEEEccCCC
Confidence            78899999999988  334457788999999999988887653            245668889999888754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=6.1e-20  Score=187.72  Aligned_cols=242  Identities=20%  Similarity=0.262  Sum_probs=189.0

Q ss_pred             ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCC
Q 037847          208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSST  286 (542)
Q Consensus       208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~  286 (542)
                      .+.++..+..+..+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .+..+ |..|..+.+|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence            45677778888888752 2378999999999999988888999999999999999 55554 467899999999999999


Q ss_pred             CCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          287 DITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       287 ~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      .++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++++|...+.++.              ..+.++++|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------~~~~~l~~L  187 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISE--------------GAFEGLSNL  187 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT--------------TTTTTCSSC
T ss_pred             cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCc--------------chhhccccc
Confidence            9999876 5889999999999999 67778776689999999999998765543332              235667778


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.|+++.+...                              ....+..+++|++|++++|.+..+++..+.        .
T Consensus       188 ~~L~L~~n~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~  229 (440)
T 3zyj_A          188 RYLNLAMCNLR------------------------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQ--------G  229 (440)
T ss_dssp             CEEECTTSCCS------------------------------SCCCCTTCSSCCEEECTTSCCCEECTTTTT--------T
T ss_pred             CeecCCCCcCc------------------------------cccccCCCcccCEEECCCCccCccChhhhc--------c
Confidence            77777654311                              012355678899999999988876555443        3


Q ss_pred             ccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          446 FRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       446 l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                      +++|+.|++++|.+  ..+..+..+++|++|+|++|.++.++.            .....+++|+.|++.+++
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH------------DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh------------hHhccccCCCEEEcCCCC
Confidence            78999999999988  334457788999999999998887753            245668899999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=2.6e-20  Score=180.91  Aligned_cols=240  Identities=20%  Similarity=0.210  Sum_probs=186.4

Q ss_pred             ecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCccccccc--chhhccCCCccEEEecCCCCCC
Q 037847          191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEIT--DGFFQSLSTLRVLSLRGNFPPS  266 (542)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~  266 (542)
                      ..+..+..+|.. -..++++|++.++.+..++.  +.++++|++|++++|.+....  +..+..+++|++|++++| .+.
T Consensus        14 c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~   91 (306)
T 2z66_A           14 CNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVI   91 (306)
T ss_dssp             CCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEE
T ss_pred             cCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccc
Confidence            344556666652 23689999999999998875  789999999999999887542  334667999999999999 677


Q ss_pred             cCccccCCCCCCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc-cccCC
Q 037847          267 TLPSGISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG-VIKGK  343 (542)
Q Consensus       267 ~lp~~i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~  343 (542)
                      .+|..+..+++|++|++++|.++.++.  .+..+++|++|++++|. +...+...+..+++|++|++++|.+.+ .+|  
T Consensus        92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--  168 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--  168 (306)
T ss_dssp             EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEEC--
T ss_pred             cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccch--
Confidence            899889999999999999999988764  78999999999999995 444444448899999999999998754 222  


Q ss_pred             CCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeec
Q 037847          344 EGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELE  423 (542)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  423 (542)
                                   ..+..+++|+.|+++.+...                            ......+..+++|++|+++
T Consensus       169 -------------~~~~~l~~L~~L~Ls~n~l~----------------------------~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          169 -------------DIFTELRNLTFLDLSQCQLE----------------------------QLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             -------------SCCTTCTTCCEEECTTSCCC----------------------------EECTTTTTTCTTCCEEECT
T ss_pred             -------------hHHhhCcCCCEEECCCCCcC----------------------------CcCHHHhcCCCCCCEEECC
Confidence                         23566778888887754311                            1112345678899999999


Q ss_pred             ccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhcc-CcceEEEeccchhhh
Q 037847          424 SCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQ-NLKQLNMQGFTMEEI  484 (542)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~-~L~~L~L~~~~l~~~  484 (542)
                      +|.+..++...+        ..+++|+.|++++|.+  ..+..+..++ +|++|+|++|.+...
T Consensus       208 ~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          208 HNNFFSLDTFPY--------KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TSCCSBCCSGGG--------TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCccCccChhhc--------cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            999987654333        3489999999999999  4445577775 999999999887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=3.6e-20  Score=182.10  Aligned_cols=262  Identities=18%  Similarity=0.176  Sum_probs=197.3

Q ss_pred             CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEe
Q 037847          228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLN  305 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~  305 (542)
                      .+++.++++++.++.+|...   .++|++|++++| .+..+ |..++.+.+|++|++++|.++.+ |..++++++|++|+
T Consensus        33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            36899999999998887653   378999999999 56665 55799999999999999999996 77899999999999


Q ss_pred             ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCc
Q 037847          306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP  385 (542)
Q Consensus       306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~  385 (542)
                      +++| .+..+|.. +.  ++|++|++++|.+.+..               ...+.++++|+.|+++.+............
T Consensus       109 L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  169 (332)
T 2ft3_A          109 ISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKVP---------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAF  169 (332)
T ss_dssp             CCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCCC---------------SGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred             CCCC-cCCccCcc-cc--ccCCEEECCCCccCccC---------------HhHhCCCccCCEEECCCCccccCCCCcccc
Confidence            9999 67788876 33  89999999999875321               123677889999999877543211111111


Q ss_pred             hhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCc-c
Q 037847          386 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDL-T  463 (542)
Q Consensus       386 ~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~-~  463 (542)
                      ... .++.+++........+.   .+  .++|++|++++|.+..+++..+        ..+++|+.|++++|.+ ... .
T Consensus       170 ~~l-~L~~L~l~~n~l~~l~~---~~--~~~L~~L~l~~n~i~~~~~~~l--------~~l~~L~~L~L~~N~l~~~~~~  235 (332)
T 2ft3_A          170 DGL-KLNYLRISEAKLTGIPK---DL--PETLNELHLDHNKIQAIELEDL--------LRYSKLYRLGLGHNQIRMIENG  235 (332)
T ss_dssp             CSC-CCSCCBCCSSBCSSCCS---SS--CSSCSCCBCCSSCCCCCCTTSS--------TTCTTCSCCBCCSSCCCCCCTT
T ss_pred             cCC-ccCEEECcCCCCCccCc---cc--cCCCCEEECCCCcCCccCHHHh--------cCCCCCCEEECCCCcCCcCChh
Confidence            111 56677776654322111   11  2699999999999987655444        3389999999999999 433 3


Q ss_pred             hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCC-------CCCCCcceEee
Q 037847          464 WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP-------QPFPKLKKIQA  536 (542)
Q Consensus       464 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------~~~p~L~~L~i  536 (542)
                      .+..+++|++|+|++|.++.++.             ....+++|+.|++.++ .+..++...       ..+++|++|++
T Consensus       236 ~~~~l~~L~~L~L~~N~l~~lp~-------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNNKLSRVPA-------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCCT-------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             HhhCCCCCCEEECCCCcCeecCh-------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence            68899999999999999987753             5677999999999986 466665431       12678999999


Q ss_pred             ccCC
Q 037847          537 FHCR  540 (542)
Q Consensus       537 ~~C~  540 (542)
                      .++|
T Consensus       302 ~~N~  305 (332)
T 2ft3_A          302 FNNP  305 (332)
T ss_dssp             CSSS
T ss_pred             ecCc
Confidence            9876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=1e-19  Score=195.11  Aligned_cols=145  Identities=30%  Similarity=0.372  Sum_probs=120.3

Q ss_pred             CcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847          193 GVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS  270 (542)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~  270 (542)
                      +.+++.+|.-- ...+++|++++|.++.++  .|.++++|++|++++|.++.+++..|.++++|++|+|++| .+..+|.
T Consensus        40 ~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~  117 (635)
T 4g8a_A           40 ELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL  117 (635)
T ss_dssp             TSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred             CCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence            44566676422 257899999999999886  4899999999999999999998888999999999999999 6777764


Q ss_pred             -ccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccccc
Q 037847          271 -GISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFGVI  340 (542)
Q Consensus       271 -~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~~~  340 (542)
                       .|+++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++.+++|++|++++|.+.+..
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccc
Confidence             57999999999999999999876 48999999999999994322 34554 788999999999998876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=2.7e-20  Score=178.84  Aligned_cols=221  Identities=19%  Similarity=0.205  Sum_probs=145.5

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~  287 (542)
                      +.++..++.+..+|. ...++++.|++++|.++.+++..+..+++|++|++++| .+..+ |..++.+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence            455666666666653 23457777777777777776666777777777777777 44444 6667777777777777775


Q ss_pred             -CCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          288 -ITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       288 -i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                       ++.+ |..+..+++|++|++++| .+..++...+.++++|++|++++|.+.+..+               ..+..+++|
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~L  155 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPD---------------DTFRDLGNL  155 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------TTTTTCTTC
T ss_pred             CccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCH---------------hHhccCCCc
Confidence             6665 556777777777777777 4444543346777777777777776543211               124455666


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                      +.|+++.+...                            ......+..+++|++|++++|.+....+..+        ..
T Consensus       156 ~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~  199 (285)
T 1ozn_A          156 THLFLHGNRIS----------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--------RD  199 (285)
T ss_dssp             CEEECCSSCCC----------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTT--------TT
T ss_pred             cEEECCCCccc----------------------------ccCHHHhcCccccCEEECCCCcccccCHhHc--------cC
Confidence            66666543211                            0011235567889999999988877654444        23


Q ss_pred             ccccCEEEEccCCC-CCc-chhhhccCcceEEEeccchhh
Q 037847          446 FRNLNTVVLRSCRG-KDL-TWLVFVQNLKQLNMQGFTMEE  483 (542)
Q Consensus       446 l~~L~~L~L~~c~~-~~~-~~l~~l~~L~~L~L~~~~l~~  483 (542)
                      +++|+.|++++|.+ ..+ ..+..+++|++|+|++|.+..
T Consensus       200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            78899999999988 433 237788999999999887653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=2e-19  Score=189.66  Aligned_cols=248  Identities=21%  Similarity=0.184  Sum_probs=125.0

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG  271 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~  271 (542)
                      .+..+..+|.... .+++.|++.+|.+..+|.  .+++|++|++++|.++.++.    .+++|++|++++| .+..+|. 
T Consensus        48 s~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~-  118 (622)
T 3g06_A           48 GESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA-  118 (622)
T ss_dssp             CSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC-
T ss_pred             cCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC-
Confidence            3444444443222 455555555555555544  44555555555555554443    3455555555555 4444543 


Q ss_pred             cCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847          272 ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG  351 (542)
Q Consensus       272 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  351 (542)
                        .+.+|++|++++|.++.+|..   +++|++|++++| .+..+|..    +++|+.|++++|.+.+. |          
T Consensus       119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~----~~~L~~L~L~~N~l~~l-~----------  177 (622)
T 3g06_A          119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL-P----------  177 (622)
T ss_dssp             --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC-C----------
T ss_pred             --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc----cCCCCEEECCCCCCCCC-c----------
Confidence              344555555555555555542   355555555555 34444431    24455555555544320 0          


Q ss_pred             CcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCcccee
Q 037847          352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMK  431 (542)
Q Consensus       352 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  431 (542)
                              ..+++|+.|+++.+....      ...                          .+++|+.|++++|.+..++
T Consensus       178 --------~~~~~L~~L~Ls~N~l~~------l~~--------------------------~~~~L~~L~L~~N~l~~l~  217 (622)
T 3g06_A          178 --------MLPSGLQELSVSDNQLAS------LPT--------------------------LPSELYKLWAYNNRLTSLP  217 (622)
T ss_dssp             --------CCCTTCCEEECCSSCCSC------CCC--------------------------CCTTCCEEECCSSCCSSCC
T ss_pred             --------ccCCCCcEEECCCCCCCC------CCC--------------------------ccchhhEEECcCCcccccC
Confidence                    123445555554432110      001                          1345666666666555432


Q ss_pred             eccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceee
Q 037847          432 IDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLT  511 (542)
Q Consensus       432 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  511 (542)
                      .            .+++|+.|++++|.+..++  ..+++|++|+|++|.++.++.                .+++|+.|+
T Consensus       218 ~------------~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~----------------~~~~L~~L~  267 (622)
T 3g06_A          218 A------------LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM----------------LPSGLLSLS  267 (622)
T ss_dssp             C------------CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC----------------CCTTCCEEE
T ss_pred             C------------CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc----------------ccccCcEEe
Confidence            1            1456666666666653333  345666666666666654421                356666666


Q ss_pred             cccCCcccccCCCCCCCCCcceEeeccCC
Q 037847          512 MWRGTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       512 l~~c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      +.+| .+..+|.....+++|+.|++++++
T Consensus       268 Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          268 VYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            6665 455555555556666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=4.9e-21  Score=186.94  Aligned_cols=261  Identities=21%  Similarity=0.202  Sum_probs=167.2

Q ss_pred             ccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847          206 EGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL  283 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l  283 (542)
                      .+++.|++.+|.+..++  .+.++++|++|++++|.+...++  +..+++|++|++++| .+..+|    ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEEC
Confidence            46777777777777664  36677777777777777766554  677777777777777 444444    2367777777


Q ss_pred             cCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhh-ccc
Q 037847          284 SSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKEL-LGL  362 (542)
Q Consensus       284 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L  362 (542)
                      ++|.++.++..  .+++|++|++++| .+..++...++.+++|++|++++|.+.+..+               ..+ ..+
T Consensus       107 ~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~~l  168 (317)
T 3o53_A          107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------------AELAASS  168 (317)
T ss_dssp             CSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEG---------------GGGGGGT
T ss_pred             CCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccH---------------HHHhhcc
Confidence            77777776543  3677777777777 4555544346667777777777776643211               122 245


Q ss_pred             cCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccc
Q 037847          363 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLF  442 (542)
Q Consensus       363 ~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  442 (542)
                      ++|+.|+++.+...                              .......+++|++|++++|.+..++.. +       
T Consensus       169 ~~L~~L~L~~N~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~-------  210 (317)
T 3o53_A          169 DTLEHLNLQYNFIY------------------------------DVKGQVVFAKLKTLDLSSNKLAFMGPE-F-------  210 (317)
T ss_dssp             TTCCEEECTTSCCC------------------------------EEECCCCCTTCCEEECCSSCCCEECGG-G-------
T ss_pred             CcCCEEECCCCcCc------------------------------ccccccccccCCEEECCCCcCCcchhh-h-------
Confidence            56666666543311                              011122367888888888888775443 2       


Q ss_pred             cccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccccc
Q 037847          443 RNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSV  521 (542)
Q Consensus       443 ~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  521 (542)
                       ..+++|+.|++++|.+ ..+..+..+++|++|+|++|.+.....           +.....+++|+.|.+.++..++..
T Consensus       211 -~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~-----------~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          211 -QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL-----------RDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             -GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHH-----------HHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             -cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCH-----------HHHHhccccceEEECCCchhccCC
Confidence             2378888888888888 545556778888888888887762111           124556788888888877776665


Q ss_pred             CCCCCCCCCcceEeeccCCC
Q 037847          522 YPNPQPFPKLKKIQAFHCRQ  541 (542)
Q Consensus       522 ~~~~~~~p~L~~L~i~~C~~  541 (542)
                      .......+.+....-.+|..
T Consensus       279 ~~~~~~~~~~~~~~~~cc~~  298 (317)
T 3o53_A          279 NEEECTVPTLGHYGAYCCED  298 (317)
T ss_dssp             SSCCCSSTTCEEETTEEEBC
T ss_pred             chhccCCCceecccceeecc
Confidence            44444445555544445544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=5e-20  Score=179.73  Aligned_cols=240  Identities=15%  Similarity=0.088  Sum_probs=175.6

Q ss_pred             CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY  303 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  303 (542)
                      +..+++|+.|++++|.++.+++..+..+++|++|++++| .+...+. ++.+++|++|++++|.++.+|    ..++|++
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~  103 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIET  103 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence            345678999999999888888777889999999999998 5555553 888999999999999888776    3488999


Q ss_pred             EeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhc
Q 037847          304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLK  383 (542)
Q Consensus       304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~  383 (542)
                      |++++| .+..++.   ..+++|++|++++|.+.+..+               ..+..+++|+.|+++.+...       
T Consensus       104 L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~~~---------------~~~~~l~~L~~L~Ls~N~l~-------  157 (317)
T 3o53_A          104 LHAANN-NISRVSC---SRGQGKKNIYLANNKITMLRD---------------LDEGCRSRVQYLDLKLNEID-------  157 (317)
T ss_dssp             EECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSGGG---------------BCTGGGSSEEEEECTTSCCC-------
T ss_pred             EECCCC-ccCCcCc---cccCCCCEEECCCCCCCCccc---------------hhhhccCCCCEEECCCCCCC-------
Confidence            999998 5666654   346789999999888754322               12455667777776644311       


Q ss_pred             CchhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC
Q 037847          384 YPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD  461 (542)
Q Consensus       384 ~~~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~  461 (542)
                                           ......+ ..+++|++|++++|.+..++..          ..+++|+.|++++|.+ ..
T Consensus       158 ---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~l~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          158 ---------------------TVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             ---------------------EEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCSSCCCEE
T ss_pred             ---------------------cccHHHHhhccCcCCEEECCCCcCcccccc----------cccccCCEEECCCCcCCcc
Confidence                                 1111222 3578999999999998875322          2278999999999998 55


Q ss_pred             cchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc-cccCCCCCCCCCcceEeeccC
Q 037847          462 LTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL-KSVYPNPQPFPKLKKIQAFHC  539 (542)
Q Consensus       462 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~p~L~~L~i~~C  539 (542)
                      ++.+..+++|++|+|++|.++.++.             ....+++|+.|++.+++-- ..++.....+++|+.|++.+|
T Consensus       207 ~~~~~~l~~L~~L~L~~N~l~~l~~-------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          207 GPEFQSAAGVTWISLRNNKLVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CGGGGGGTTCSEEECTTSCCCEECT-------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhhhcccCcccEEECcCCcccchhh-------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            5668889999999999998887643             5667899999999987643 233444556788888777644

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=7.7e-19  Score=179.60  Aligned_cols=120  Identities=16%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccC
Q 037847          206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS  285 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~  285 (542)
                      .+++.+++.+|.+..+|.+.++++|++|++++|.++.++..    ..+|++|++++| .+..+| .++.+++|++|++++
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence            34555555555555555555555555555555555443321    235555555555 344444 455555555555555


Q ss_pred             CCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          286 TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       286 ~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      |.++.+|...   .+|++|++++| .+..+|.  ++.+++|++|++++|.+.
T Consensus       205 N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          205 NSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             SCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             CcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCC
Confidence            5555554322   35555555555 3445553  555666666666655543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=1.9e-18  Score=176.62  Aligned_cols=303  Identities=16%  Similarity=0.152  Sum_probs=151.3

Q ss_pred             EEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC
Q 037847          189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL  268 (542)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l  268 (542)
                      +...+..+..+|..  ..+++.+++.+|.+..+|..  +++|++|++++|.++.++..    .++|++|++++| .+..+
T Consensus        76 L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~l  146 (454)
T 1jl5_A           76 LELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKL  146 (454)
T ss_dssp             EECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSC
T ss_pred             EEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCC
Confidence            33344444444442  24666667766666666542  35666666666665544321    146666666666 44456


Q ss_pred             ccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCc--
Q 037847          269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGN--  346 (542)
Q Consensus       269 p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--  346 (542)
                      | .++.+.+|++|++++|.++.+|..+   .+|++|++++| .+..+|.  ++++++|++|++++|.+.+ +|....+  
T Consensus       147 p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~-l~~~~~~L~  218 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKK-LPDLPLSLE  218 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-CCCCCTTCC
T ss_pred             c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCc-CCCCcCccc
Confidence            6 4666666666666666666665432   36666666666 4444553  5666666666666665543 2211100  


Q ss_pred             ---cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeec
Q 037847          347 ---VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELE  423 (542)
Q Consensus       347 ---~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  423 (542)
                         ....... .+..+..+++|+.|+++.+....      .......++.+++.++.....+      ..+++|++|+++
T Consensus       219 ~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~------l~~~~~~L~~L~l~~N~l~~l~------~~~~~L~~L~ls  285 (454)
T 1jl5_A          219 SIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT------LPDLPPSLEALNVRDNYLTDLP------ELPQSLTFLDVS  285 (454)
T ss_dssp             EEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS------CCSCCTTCCEEECCSSCCSCCC------CCCTTCCEEECC
T ss_pred             EEECcCCcCC-cccccCCCCCCCEEECCCCcCCc------ccccccccCEEECCCCcccccC------cccCcCCEEECc
Confidence               0000011 11236677888888887664332      1223356677777665432111      113567777777


Q ss_pred             ccCccceeec--cchh-------hcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccc
Q 037847          424 SCNLEEMKID--STEE-------VKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDIS  494 (542)
Q Consensus       424 ~~~~~~~~~~--~~~~-------~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  494 (542)
                      +|.+..++..  ....       ...++ ...++|+.|++++|.+..++.  .+++|++|++++|.++.++         
T Consensus       286 ~N~l~~l~~~~~~L~~L~l~~N~l~~i~-~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~l~~lp---------  353 (454)
T 1jl5_A          286 ENIFSGLSELPPNLYYLNASSNEIRSLC-DLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVP---------  353 (454)
T ss_dssp             SSCCSEESCCCTTCCEEECCSSCCSEEC-CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC---------
T ss_pred             CCccCcccCcCCcCCEEECcCCcCCccc-CCcCcCCEEECCCCccccccc--cCCcCCEEECCCCcccccc---------
Confidence            7766553210  0000       00000 012466677776666622222  2566777777776666542         


Q ss_pred             cccCCcCCCCCccceeecccCCccc--ccCCCCCCC-------------CCcceEeeccCC
Q 037847          495 EVIGSEHNFFPRLEYLTMWRGTNLK--SVYPNPQPF-------------PKLKKIQAFHCR  540 (542)
Q Consensus       495 ~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------p~L~~L~i~~C~  540 (542)
                          .   .+++|++|++.++.--.  .+|...+.+             ++|++|++++++
T Consensus       354 ----~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          354 ----E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             ----C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             ----c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence                1   36778888887764222  344433333             677888877653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1.5e-19  Score=186.72  Aligned_cols=236  Identities=15%  Similarity=0.091  Sum_probs=168.1

Q ss_pred             CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEe
Q 037847          226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN  305 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~  305 (542)
                      .+++|++|++++|.+..+++..|..+++|++|++++| .+...++ ++.+++|++|++++|.++.+|.    .++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence            4557888888888887777766888888888888888 4554443 7888888888888888777663    37888888


Q ss_pred             ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCc
Q 037847          306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP  385 (542)
Q Consensus       306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~  385 (542)
                      +++| .+..+|.   ..+++|++|++++|.+.+..|               ..++.+++|+.|+++.+...         
T Consensus       106 L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~L~Ls~N~l~---------  157 (487)
T 3oja_A          106 AANN-NISRVSC---SRGQGKKNIYLANNKITMLRD---------------LDEGCRSRVQYLDLKLNEID---------  157 (487)
T ss_dssp             CCSS-CCCCEEE---CCCSSCEEEECCSSCCCSGGG---------------BCGGGGSSEEEEECTTSCCC---------
T ss_pred             CcCC-cCCCCCc---cccCCCCEEECCCCCCCCCCc---------------hhhcCCCCCCEEECCCCCCC---------
Confidence            8888 4555554   246778888888887654322               12445666666666544311         


Q ss_pred             hhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcc
Q 037847          386 KLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLT  463 (542)
Q Consensus       386 ~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~  463 (542)
                                         ......+ ..+++|++|++++|.+..++..          ..+++|+.|+|++|.+ ..++
T Consensus       158 -------------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----------~~l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          158 -------------------TVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             -------------------EEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCSSCCCEECG
T ss_pred             -------------------CcChHHHhhhCCcccEEecCCCcccccccc----------ccCCCCCEEECCCCCCCCCCH
Confidence                               0111223 2578999999999998875322          2389999999999999 6666


Q ss_pred             hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc-cccCCCCCCCCCcceEeec
Q 037847          464 WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL-KSVYPNPQPFPKLKKIQAF  537 (542)
Q Consensus       464 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~p~L~~L~i~  537 (542)
                      .+..+++|+.|+|++|.+..++.             ....+++|+.|++.+++-. ..++.....++.|+.+++.
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~lp~-------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCEECT-------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHcCCCCccEEEecCCcCcccch-------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            78899999999999999887643             5677899999999987643 2333344567777777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=3.1e-19  Score=171.46  Aligned_cols=216  Identities=24%  Similarity=0.302  Sum_probs=172.0

Q ss_pred             ecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC
Q 037847          191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL  268 (542)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l  268 (542)
                      ..+..+..+|. ....++++|++.++.+..++  .+..+++|++|++++|.+..+.+..+..+++|++|++++|..+..+
T Consensus        18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~   96 (285)
T 1ozn_A           18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (285)
T ss_dssp             CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence            34455566664 23468999999999999876  4889999999999999998887777999999999999999546666


Q ss_pred             -ccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCc
Q 037847          269 -PSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGN  346 (542)
Q Consensus       269 -p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  346 (542)
                       |..+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...++.+++|++|++++|.+.+..+     
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----  170 (285)
T 1ozn_A           97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPE-----  170 (285)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECT-----
T ss_pred             CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCH-----
Confidence             77899999999999999999986 567889999999999999 6677776668899999999999998753211     


Q ss_pred             cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccC
Q 037847          347 VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCN  426 (542)
Q Consensus       347 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  426 (542)
                                ..+..+++|+.|+++.+...                            ......+..+++|++|++++|.
T Consensus       171 ----------~~~~~l~~L~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          171 ----------RAFRGLHSLDRLLLHQNRVA----------------------------HVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             ----------TTTTTCTTCCEEECCSSCCC----------------------------EECTTTTTTCTTCCEEECCSSC
T ss_pred             ----------HHhcCccccCEEECCCCccc----------------------------ccCHhHccCcccccEeeCCCCc
Confidence                      23566788888888755311                            1112345678899999999999


Q ss_pred             ccceeeccchhhcccccccccccCEEEEccCCC
Q 037847          427 LEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG  459 (542)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~  459 (542)
                      +..++...+        ..+++|+.|++++|.+
T Consensus       213 l~~~~~~~~--------~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          213 LSALPTEAL--------APLRALQYLRLNDNPW  237 (285)
T ss_dssp             CSCCCHHHH--------TTCTTCCEEECCSSCE
T ss_pred             CCcCCHHHc--------ccCcccCEEeccCCCc
Confidence            987654433        3389999999999988

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=6.3e-19  Score=171.03  Aligned_cols=197  Identities=24%  Similarity=0.371  Sum_probs=129.3

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL  281 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L  281 (542)
                      ...+.+++.|++.++.+..++.+..+++|++|++++|.+..+++  +..+++|++|++++| .+..+| .++.+.+|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence            34456677777777777766666677777777777776666655  666777777777777 455555 56677777777


Q ss_pred             eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847          282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG  361 (542)
Q Consensus       282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  361 (542)
                      ++++|.++.+|. +..+++|++|++++| .+..++.  ++.+++|++|++++|.+...                      
T Consensus       113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~----------------------  166 (308)
T 1h6u_A          113 DLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDL----------------------  166 (308)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC----------------------
T ss_pred             ECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCC----------------------
Confidence            777777766654 667777777777776 4555554  56667777777766654210                      


Q ss_pred             ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847          362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL  441 (542)
Q Consensus       362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  441 (542)
                                                                     ..+..+++|++|++++|.+..++.         
T Consensus       167 -----------------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~---------  190 (308)
T 1h6u_A          167 -----------------------------------------------TPLANLSKLTTLKADDNKISDISP---------  190 (308)
T ss_dssp             -----------------------------------------------GGGTTCTTCCEEECCSSCCCCCGG---------
T ss_pred             -----------------------------------------------hhhcCCCCCCEEECCCCccCcChh---------
Confidence                                                           113345677777777777665322         


Q ss_pred             ccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhc
Q 037847          442 FRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII  485 (542)
Q Consensus       442 ~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~  485 (542)
                       ...+++|+.|++++|.+...+.+..+++|++|++++|.++..+
T Consensus       191 -l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          191 -LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             -GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred             -hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence             1336778888888877744445777888888888887776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1e-19  Score=187.95  Aligned_cols=237  Identities=21%  Similarity=0.180  Sum_probs=184.5

Q ss_pred             cccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847          205 WEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD  282 (542)
Q Consensus       205 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~  282 (542)
                      +++++.|++++|.+..++  .+..+++|++|++++|.+...++  +..+++|++|++++| .+..+|.    .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence            358999999999999875  58899999999999999987766  889999999999999 6666663    38999999


Q ss_pred             ccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhc-c
Q 037847          283 LSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL-G  361 (542)
Q Consensus       283 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~  361 (542)
                      +++|.++.+|..  .+++|++|++++| .+..++...++.+++|++|++++|.+.+..|               ..+. .
T Consensus       106 L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~l~~~  167 (487)
T 3oja_A          106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------------AELAAS  167 (487)
T ss_dssp             CCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEG---------------GGGGGG
T ss_pred             CcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcCh---------------HHHhhh
Confidence            999999997753  5789999999999 5555544348889999999999998865332               2333 5


Q ss_pred             ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847          362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL  441 (542)
Q Consensus       362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  441 (542)
                      +++|+.|+++.+...                              .......+++|++|++++|.+..+++. +      
T Consensus       168 l~~L~~L~Ls~N~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~------  210 (487)
T 3oja_A          168 SDTLEHLNLQYNFIY------------------------------DVKGQVVFAKLKTLDLSSNKLAFMGPE-F------  210 (487)
T ss_dssp             TTTCCEEECTTSCCC------------------------------EEECCCCCTTCCEEECCSSCCCEECGG-G------
T ss_pred             CCcccEEecCCCccc------------------------------cccccccCCCCCEEECCCCCCCCCCHh-H------
Confidence            778888888755421                              011223478999999999999886543 2      


Q ss_pred             ccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          442 FRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       442 ~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                        ..+++|+.|++++|.+ ..++.+..+++|+.|++++|.+.....           +.....+++|+.|.+..+.
T Consensus       211 --~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~-----------~~~~~~l~~L~~l~~~~~~  273 (487)
T 3oja_A          211 --QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL-----------RDFFSKNQRVQTVAKQTVK  273 (487)
T ss_dssp             --GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH-----------HHHHTTCHHHHHHHHHHHH
T ss_pred             --cCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch-----------HHHHHhCCCCcEEeccccc
Confidence              3489999999999999 656667889999999999988772211           1245668888888876433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.79  E-value=3.7e-19  Score=205.67  Aligned_cols=166  Identities=18%  Similarity=0.310  Sum_probs=140.3

Q ss_pred             CCeeecCC-CChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccC
Q 037847            3 AEKLEVYS-LAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSAS   81 (542)
Q Consensus         3 ~~~~~l~~-L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~   81 (542)
                      ..+|++.+ |+++|||+||++.++..    .+++.+++++|+++|+|+||||+++|+.|+.+.  ..|+..++.+....+
T Consensus       277 ~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~  350 (1249)
T 3sfz_A          277 KHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF  350 (1249)
T ss_dssp             BCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred             ceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence            36788996 99999999999998543    345567899999999999999999999999843  579999999977654


Q ss_pred             CC-----CCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccc
Q 037847           82 KF-----SGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLL  156 (542)
Q Consensus        82 ~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~  156 (542)
                      ..     ......+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.+++     +.++.++++|++++|+
T Consensus       351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~sl~  424 (1249)
T 3sfz_A          351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNKSLL  424 (1249)
T ss_dssp             CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTTSC
T ss_pred             hhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhccce
Confidence            31     11224799999999999999 8999999999999999999999999997764     6789999999999999


Q ss_pred             cccCC---CeEEeehHHHHHHHHHHcc
Q 037847          157 EEEGD---DHVKMHDMIREMSLWIACT  180 (542)
Q Consensus       157 ~~~~~---~~~~mhdl~~~~~~~i~~~  180 (542)
                      +....   ..|+|||++|++++..+..
T Consensus       425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~  451 (1249)
T 3sfz_A          425 FCNRNGKSFCYYLHDLQVDFLTEKNRS  451 (1249)
T ss_dssp             EEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred             EEecCCCceEEEecHHHHHHHHhhhhH
Confidence            98533   3599999999999887553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=1.7e-18  Score=168.04  Aligned_cols=198  Identities=19%  Similarity=0.248  Sum_probs=147.8

Q ss_pred             cCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhc
Q 037847          218 IGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA  297 (542)
Q Consensus       218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~  297 (542)
                      +..+....++++|+.|+++++.+..++.  +..+++|++|++++| .+..++. ++.+++|++|++++|.++.+| .+..
T Consensus        31 ~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~  105 (308)
T 1h6u_A           31 VTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAG  105 (308)
T ss_dssp             TTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred             cCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence            3333334456778888888887776653  677888888888888 6666665 778888888888888777775 5777


Q ss_pred             CCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHH
Q 037847          298 LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLA  377 (542)
Q Consensus       298 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~  377 (542)
                      +++|++|++++| .+..+|.  +..+++|++|++++|.+.+.                                      
T Consensus       106 l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~--------------------------------------  144 (308)
T 1h6u_A          106 LQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI--------------------------------------  144 (308)
T ss_dssp             CTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC--------------------------------------
T ss_pred             CCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC--------------------------------------
Confidence            888888888887 5566665  67778888888877754310                                      


Q ss_pred             HHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccC
Q 037847          378 VQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC  457 (542)
Q Consensus       378 ~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c  457 (542)
                                                     ..+..+++|++|++++|.+..++.          ...+++|+.|++++|
T Consensus       145 -------------------------------~~l~~l~~L~~L~l~~n~l~~~~~----------l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          145 -------------------------------SPLAGLTNLQYLSIGNAQVSDLTP----------LANLSKLTTLKADDN  183 (308)
T ss_dssp             -------------------------------GGGGGCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSS
T ss_pred             -------------------------------ccccCCCCccEEEccCCcCCCChh----------hcCCCCCCEEECCCC
Confidence                                           113456789999999998876432          244899999999999


Q ss_pred             CCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          458 RGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       458 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                      .+..++.+..+++|++|+|++|.+++++              ....+++|+.|++.+++
T Consensus       184 ~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------------~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          184 KISDISPLASLPNLIEVHLKNNQISDVS--------------PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCCCCGGGGGCTTCCEEECTTSCCCBCG--------------GGTTCTTCCEEEEEEEE
T ss_pred             ccCcChhhcCCCCCCEEEccCCccCccc--------------cccCCCCCCEEEccCCe
Confidence            9955666899999999999999988764              34568999999998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=5.8e-20  Score=178.86  Aligned_cols=128  Identities=16%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             ccceEEEeecCCcCCCCC-CCCCCCccEEEccCcccccc-cchhhc-------cCCCccEEEecCCCCCCcCcccc--CC
Q 037847          206 EGAKRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEI-TDGFFQ-------SLSTLRVLSLRGNFPPSTLPSGI--SG  274 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~-------~l~~L~~L~l~~~~~~~~lp~~i--~~  274 (542)
                      .+++.+++.++.+ .+|. +..  .|+.|++++|.+... .+..+.       .+++|++|++++|.....+|..+  +.
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            4566667777777 5543 222  288889998877432 222233       68999999999995555788876  89


Q ss_pred             CCCCCEEeccCCCCCcccHHhhcC-----CCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          275 LVSLHHLDLSSTDITGLPQELKAL-----EKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       275 l~~L~~L~l~~~~i~~lp~~i~~l-----~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      +++|++|++++|.++.+|..++.+     ++|++|++++| .+..++...++++++|++|++++|.+.
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcC
Confidence            999999999999999888888877     89999999999 566666445899999999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=5.1e-18  Score=162.98  Aligned_cols=133  Identities=20%  Similarity=0.206  Sum_probs=113.7

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL  281 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L  281 (542)
                      +..+.+++.+++.++.+..+|... .++++.|++++|.+..+++..+..+++|++|++++| .+..+|.. +.+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence            344567889999999998887422 378999999999998888777999999999999999 67777754 889999999


Q ss_pred             eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847          282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      ++++|.++.+|..+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+.+
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence            9999999999999999999999999999 6777776668999999999999988753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=2e-17  Score=174.39  Aligned_cols=237  Identities=20%  Similarity=0.162  Sum_probs=175.7

Q ss_pred             ceEEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          186 QNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      -..+...++.+..+|.  .+.+++.|++++|.+..+|.  .+++|++|++++|.++.++.    .+++|++|++++| .+
T Consensus        63 L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N-~l  133 (622)
T 3g06_A           63 ITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN-QL  133 (622)
T ss_dssp             CSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS-CC
T ss_pred             CcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC-CC
Confidence            3455666677777776  56899999999999999887  88999999999999988766    5689999999999 68


Q ss_pred             CcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCC
Q 037847          266 STLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEG  345 (542)
Q Consensus       266 ~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  345 (542)
                      ..+|..   +++|++|++++|.++.+|.   .+.+|+.|++++| .+..+|    ..+++|+.|++++|.+.+ +|.   
T Consensus       134 ~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---  198 (622)
T 3g06_A          134 TSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS-LPT---  198 (622)
T ss_dssp             SCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-CCC---
T ss_pred             CcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-CCC---
Confidence            888864   4899999999999999886   3578999999999 677788    346899999999998753 211   


Q ss_pred             ccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeeccc
Q 037847          346 NVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC  425 (542)
Q Consensus       346 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  425 (542)
                                     .+.+|+.|+++.+...      ........++.|++.++..+..+      ..+++|++|++++|
T Consensus       199 ---------------~~~~L~~L~L~~N~l~------~l~~~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          199 ---------------LPSELYKLWAYNNRLT------SLPALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGN  251 (622)
T ss_dssp             ---------------CCTTCCEEECCSSCCS------SCCCCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS
T ss_pred             ---------------ccchhhEEECcCCccc------ccCCCCCCCCEEEccCCccCcCC------CCCCcCcEEECCCC
Confidence                           1356777777655432      12222355667777655432111      34577888888888


Q ss_pred             CccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhc
Q 037847          426 NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEII  485 (542)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~  485 (542)
                      .+..++.            .+++|+.|+|++|.+ ..++.+..+++|+.|+|++|.+....
T Consensus       252 ~L~~lp~------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          252 RLTSLPM------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             CCSCCCC------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred             CCCcCCc------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence            7766432            267788888888877 55566778888888888887776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=1.8e-17  Score=157.68  Aligned_cols=128  Identities=23%  Similarity=0.340  Sum_probs=98.4

Q ss_pred             cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccC
Q 037847          207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSS  285 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~  285 (542)
                      ..+.+++.++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence            4567888888888777522 267888888888888887766888888888888888 56666654 47788888888888


Q ss_pred             CCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          286 TDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       286 ~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      |.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++++|.+.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            888887654 577888888888888 566666655788888888888887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=1.8e-17  Score=158.36  Aligned_cols=55  Identities=9%  Similarity=0.039  Sum_probs=33.0

Q ss_pred             eeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcch-hhhccCcceEEEeccchh
Q 037847          419 ELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTW-LVFVQNLKQLNMQGFTME  482 (542)
Q Consensus       419 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~-l~~l~~L~~L~L~~~~l~  482 (542)
                      +|++++|.+..++...+.         ..+|+.|++++|.+ ..++. +..+++|++|+|++|.+.
T Consensus       181 ~L~ls~n~l~~~~~~~~~---------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAFK---------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             EEECCSSCCCEECTTSSC---------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             eeecCCCcccccCccccC---------CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            566677766654433221         23677777777777 33332 466777777777776654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.75  E-value=2e-18  Score=184.42  Aligned_cols=142  Identities=15%  Similarity=0.258  Sum_probs=120.1

Q ss_pred             eeecC------CCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcC-CChhHHHHHHHHHh
Q 037847            5 KLEVY------SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ-RKVGDWKRAINKMR   77 (542)
Q Consensus         5 ~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~-~~~~~W~~~~~~l~   77 (542)
                      +|+|+      +|+++|||+||+++....       ..++..+|   |+|+||||+++|+.|+.+ .+.++|+..     
T Consensus       286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-----  350 (1221)
T 1vt4_I          286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-----  350 (1221)
T ss_dssp             SCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred             EEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence            67788      999999999999984221       23444444   999999999999999986 367889752     


Q ss_pred             cccCCCCCChHHHHHHHHhhcCCCCchhh-hHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccc
Q 037847           78 TSASKFSGMKEEVFSRLKFSYDSLSTDEL-RSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLL  156 (542)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~  156 (542)
                              ....+..+|++||+.||+ +. |.||+|||+||+++.|+++.++.+|+++|.    +.+..++++|+++||+
T Consensus       351 --------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe----edAe~~L~eLvdRSLL  417 (1221)
T 1vt4_I          351 --------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLV  417 (1221)
T ss_dssp             --------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS----HHHHHHHHHHHTSSSS
T ss_pred             --------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH----HHHHHHHHHHHhhCCE
Confidence                    124899999999999999 78 999999999999999999999999999871    4688999999999999


Q ss_pred             ccc-CCCeEEeehHHHHHH
Q 037847          157 EEE-GDDHVKMHDMIREMS  174 (542)
Q Consensus       157 ~~~-~~~~~~mhdl~~~~~  174 (542)
                      +.. ....|+|||++++++
T Consensus       418 q~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          418 EKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             SBCSSSSEEBCCCHHHHHH
T ss_pred             EEeCCCCEEEehHHHHHHh
Confidence            985 467899999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=2.2e-18  Score=164.21  Aligned_cols=200  Identities=22%  Similarity=0.284  Sum_probs=130.6

Q ss_pred             cccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCC
Q 037847          201 KVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLH  279 (542)
Q Consensus       201 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~  279 (542)
                      ....+.+++.+++.++.+..++.+..+++|++|++++|.+...+  .+..+++|++|++++| .+..+|. .++.+.+|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred             ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence            34455667777777777777666777777777777777666543  2667777777777777 4444443 356677777


Q ss_pred             EEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847          280 HLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE  358 (542)
Q Consensus       280 ~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (542)
                      +|++++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++++|.+.+..                  
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------  173 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLP------------------  173 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccC------------------
Confidence            777777777765544 566777777777777 455555554566777777777766543110                  


Q ss_pred             hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847          359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV  438 (542)
Q Consensus       359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  438 (542)
                                                                       ...+..+++|++|++++|.+..++...+   
T Consensus       174 -------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~---  201 (272)
T 3rfs_A          174 -------------------------------------------------EGVFDKLTQLKDLRLYQNQLKSVPDGVF---  201 (272)
T ss_dssp             -------------------------------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT---
T ss_pred             -------------------------------------------------HHHhcCCccCCEEECCCCcCCccCHHHH---
Confidence                                                             1123456788888998888877554433   


Q ss_pred             cccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhh
Q 037847          439 KKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       439 ~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                           ..+++|+.|++++|...     +.+|+|++|+++.|.+...
T Consensus       202 -----~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          202 -----DRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSGV  237 (272)
T ss_dssp             -----TTCTTCCEEECCSSCBC-----CCTTTTHHHHHHHHHTGGG
T ss_pred             -----hCCcCCCEEEccCCCcc-----ccCcHHHHHHHHHHhCCCc
Confidence                 33788888888888651     2356777777777666544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=6.3e-18  Score=157.81  Aligned_cols=112  Identities=19%  Similarity=0.309  Sum_probs=69.1

Q ss_pred             cCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccC-CCCCcccH-H
Q 037847          218 IGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSS-TDITGLPQ-E  294 (542)
Q Consensus       218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~-~~i~~lp~-~  294 (542)
                      +..+|.  -.++++.|++++|.++.+++..|..+++|++|++++|..+..+|. .++.+++|++|++++ |.++.+|. .
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            455555  233677777777777666665566777777777777732555543 456666777777766 66666553 3


Q ss_pred             hhcCCCCCEEeccCCcccCccchhhcCCCCCCc---EEeccCc
Q 037847          295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLE---VLRLCGC  334 (542)
Q Consensus       295 i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~---~L~l~~~  334 (542)
                      +..+++|++|++++| .+..+|.  ++.+++|+   +|++++|
T Consensus       101 f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          101 LKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred             hCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence            556666666666666 4445554  55555555   6666555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=1.2e-17  Score=159.10  Aligned_cols=219  Identities=18%  Similarity=0.248  Sum_probs=158.1

Q ss_pred             EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCC
Q 037847          210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT  289 (542)
Q Consensus       210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~  289 (542)
                      .+.+..+.+........+++|+.|++.++.+...+.  +..+++|++|++++| .+..++ .++.+++|++|++++|.++
T Consensus        23 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             HHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccC
Confidence            344444555555556677889999999998876654  788999999999999 566665 7889999999999999998


Q ss_pred             cccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCcee
Q 037847          290 GLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVL  368 (542)
Q Consensus       290 ~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l  368 (542)
                      .+|.. ++.+++|++|++++| .+..+|...++.+++|++|++++|.+.+..+                           
T Consensus        99 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------  150 (272)
T 3rfs_A           99 SLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---------------------------  150 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------
T ss_pred             ccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCH---------------------------
Confidence            87655 688999999999998 5666776657889999999998886542110                           


Q ss_pred             eeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccc
Q 037847          369 SWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN  448 (542)
Q Consensus       369 ~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  448 (542)
                                                              ..+..+++|++|++++|.+..++...+        ..+++
T Consensus       151 ----------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~  182 (272)
T 3rfs_A          151 ----------------------------------------GVFDKLTNLTELDLSYNQLQSLPEGVF--------DKLTQ  182 (272)
T ss_dssp             ----------------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCTT
T ss_pred             ----------------------------------------HHhccCccCCEEECCCCCcCccCHHHh--------cCCcc
Confidence                                                    123346788889999988877554433        33789


Q ss_pred             cCEEEEccCCC-CCcc-hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCC
Q 037847          449 LNTVVLRSCRG-KDLT-WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQ  526 (542)
Q Consensus       449 L~~L~L~~c~~-~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  526 (542)
                      |+.|++++|.+ ..++ .+..+++|++|+|++|.+.                   +.+|+|+.|.+..+.--..+|...+
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------------~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------------CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------------ccCcHHHHHHHHHHhCCCcccCccc
Confidence            99999999988 3333 3678999999999988643                   2366677776665443334444443


Q ss_pred             C
Q 037847          527 P  527 (542)
Q Consensus       527 ~  527 (542)
                      .
T Consensus       244 ~  244 (272)
T 3rfs_A          244 S  244 (272)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=4.1e-17  Score=155.20  Aligned_cols=198  Identities=20%  Similarity=0.236  Sum_probs=146.1

Q ss_pred             CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCCcccHHh-hcCCCCCEEec
Q 037847          229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNL  306 (542)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l  306 (542)
                      ..++++++++.++.+|...   .+++++|++++| .+..+|. .++.+.+|++|++++|.++.+|..+ ..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4688999999998877652   268999999999 5666654 7899999999999999999988765 78999999999


Q ss_pred             cCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCch
Q 037847          307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPK  386 (542)
Q Consensus       307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~  386 (542)
                      ++| .+..+|...+..+++|++|++++|.+.+..+               ..+..+++|+.|+++.+...          
T Consensus        93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~L~~L~Ls~n~l~----------  146 (270)
T 2o6q_A           93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPP---------------RVFDSLTKLTYLSLGYNELQ----------  146 (270)
T ss_dssp             CSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------------TTTTTCTTCCEEECCSSCCC----------
T ss_pred             CCC-cCCcCCHhHcccccCCCEEECCCCccCeeCH---------------HHhCcCcCCCEEECCCCcCC----------
Confidence            999 6777877668899999999999998754221               22456677777777644311          


Q ss_pred             hhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcc-h
Q 037847          387 LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLT-W  464 (542)
Q Consensus       387 ~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~-~  464 (542)
                                        ......+..+++|++|++++|.+..++...+        ..+++|+.|++++|.+ ..++ .
T Consensus       147 ------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          147 ------------------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAF--------DKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             ------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ------------------ccCHhHccCCcccceeEecCCcCcEeChhHh--------ccCCCcCEEECCCCcCCcCCHHH
Confidence                              1111234567788888888887776554333        2367888888888877 3333 3


Q ss_pred             hhhccCcceEEEeccchh
Q 037847          465 LVFVQNLKQLNMQGFTME  482 (542)
Q Consensus       465 l~~l~~L~~L~L~~~~l~  482 (542)
                      +..+++|+.|+|++|.+.
T Consensus       201 ~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTTCCEEECCSSCBC
T ss_pred             hccccCCCEEEecCCCee
Confidence            667888888888887654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=1.1e-16  Score=171.44  Aligned_cols=125  Identities=18%  Similarity=0.111  Sum_probs=106.5

Q ss_pred             EEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCC
Q 037847          211 ISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDIT  289 (542)
Q Consensus       211 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~  289 (542)
                      .+-.+.++..+|.-- -+++++|++++|.++.+++..|.++++|++|+|++| .+..+|+ .|+++++|++|+|++|.++
T Consensus        36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           36 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            444455667776411 257999999999999999888999999999999999 6777754 6899999999999999999


Q ss_pred             cccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847          290 GLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       290 ~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      .+|.. +.++++|++|++++| .+..+|...++++++|++|++++|.+.+
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCcccc
Confidence            98864 799999999999999 6778887668999999999999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=5.2e-17  Score=155.07  Aligned_cols=214  Identities=25%  Similarity=0.283  Sum_probs=156.7

Q ss_pred             CcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-c
Q 037847          193 GVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-P  269 (542)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p  269 (542)
                      +.....+|... ..+++.|++.++.+..++  .+.++++|++|++++|.+..+++..+..+++|++|++++| .+..+ |
T Consensus        16 ~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~   93 (276)
T 2z62_A           16 ELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL   93 (276)
T ss_dssp             TSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred             CCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccCh
Confidence            34445555422 257899999999998775  5788999999999999998888877899999999999999 45544 4


Q ss_pred             cccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccCc--cchhhcCCCCCCcEEeccCccccccccCCCCc
Q 037847          270 SGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSI--IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGN  346 (542)
Q Consensus       270 ~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  346 (542)
                      ..++.+.+|++|++++|.+..++. .++.+++|++|++++| .+..  +|.. ++.+++|++|++++|.+.+..      
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~------  165 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY------  165 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC------
T ss_pred             hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcCC------
Confidence            678899999999999999888765 6889999999999998 4444  5665 888999999999999876421      


Q ss_pred             cccCCCcchhHhhccccCCc-eeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeeccc
Q 037847          347 VLCDGAEPLMKELLGLKHLN-VLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC  425 (542)
Q Consensus       347 ~~~~~~~~~~~~l~~L~~L~-~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  425 (542)
                            ...+..+.+++.|. .++++.+...                            .. ........+|++|++++|
T Consensus       166 ------~~~~~~l~~L~~l~l~L~ls~n~l~----------------------------~~-~~~~~~~~~L~~L~L~~n  210 (276)
T 2z62_A          166 ------CTDLRVLHQMPLLNLSLDLSLNPMN----------------------------FI-QPGAFKEIRLKELALDTN  210 (276)
T ss_dssp             ------GGGGHHHHTCTTCCEEEECCSSCCC----------------------------EE-CTTSSCSCCEEEEECCSS
T ss_pred             ------HHHhhhhhhccccceeeecCCCccc----------------------------cc-CccccCCCcccEEECCCC
Confidence                  23344444554444 4444433211                            00 011122348999999999


Q ss_pred             CccceeeccchhhcccccccccccCEEEEccCCC
Q 037847          426 NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG  459 (542)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~  459 (542)
                      .+..++...+        ..+++|+.|++++|++
T Consensus       211 ~l~~~~~~~~--------~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          211 QLKSVPDGIF--------DRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CCSCCCTTTT--------TTCCSCCEEECCSSCB
T ss_pred             ceeecCHhHh--------cccccccEEEccCCcc
Confidence            9987655443        3389999999999987

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=3e-17  Score=157.57  Aligned_cols=201  Identities=19%  Similarity=0.165  Sum_probs=155.6

Q ss_pred             CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccHHhhcCCCCC
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQELKALEKLR  302 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~  302 (542)
                      +.++++++.++++++.++.+|...   .+++++|++++| .+..+ |..+..+.+|++|++++|.++.+|.. +.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence            457788999999999998888763   378999999999 45544 66799999999999999999998765 8899999


Q ss_pred             EEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhh
Q 037847          303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFL  382 (542)
Q Consensus       303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~  382 (542)
                      +|++++| .+..+|.. +..+++|++|++++|.+.+..+               ..+.++++|+.|+++.+...      
T Consensus        81 ~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~---------------~~~~~l~~L~~L~L~~N~l~------  137 (290)
T 1p9a_G           81 TLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSLPL---------------GALRGLGELQELYLKGNELK------  137 (290)
T ss_dssp             EEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCCCS---------------STTTTCTTCCEEECTTSCCC------
T ss_pred             EEECCCC-cCCcCchh-hccCCCCCEEECCCCcCcccCH---------------HHHcCCCCCCEEECCCCCCC------
Confidence            9999999 67788875 7889999999999998764322               23556677777777644311      


Q ss_pred             cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC
Q 037847          383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD  461 (542)
Q Consensus       383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~  461 (542)
                                            ......+..+++|+.|++++|.+..++...+        ..+++|+.|+|++|.+ ..
T Consensus       138 ----------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--------~~l~~L~~L~L~~N~l~~i  187 (290)
T 1p9a_G          138 ----------------------TLPPGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSLYTI  187 (290)
T ss_dssp             ----------------------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTT--------TTCTTCCEEECCSSCCCCC
T ss_pred             ----------------------ccChhhcccccCCCEEECCCCcCCccCHHHh--------cCcCCCCEEECCCCcCCcc
Confidence                                  1111234567889999999998887655443        2378899999999988 66


Q ss_pred             cchhhhccCcceEEEeccchh
Q 037847          462 LTWLVFVQNLKQLNMQGFTME  482 (542)
Q Consensus       462 ~~~l~~l~~L~~L~L~~~~l~  482 (542)
                      +..+..+++|+.|+|++|.+.
T Consensus       188 p~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhhcccccCCeEEeCCCCcc
Confidence            666777888999999887664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=8.8e-17  Score=158.97  Aligned_cols=236  Identities=13%  Similarity=0.084  Sum_probs=142.1

Q ss_pred             EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCE-EeccCCC
Q 037847          210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHH-LDLSSTD  287 (542)
Q Consensus       210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~-L~l~~~~  287 (542)
                      .++..++.++.+|.-. .++++.|++++|.++.+++..|.++++|++|+|++|...+.+|. .|.++.+|++ +.+.+|.
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            4555556666665311 24667777777777666666666777777777777743444443 3455666554 3344456


Q ss_pred             CCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCc
Q 037847          288 ITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLN  366 (542)
Q Consensus       288 i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  366 (542)
                      ++.+| ..+..+++|++|++++| .+..+|........++..|++.++.....++                         
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-------------------------  145 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-------------------------  145 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-------------------------
T ss_pred             ccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc-------------------------
Confidence            66653 34566666666666666 4444544223333444555554332111110                         


Q ss_pred             eeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccccc-ccccceeeecccCccceeeccchhhccccccc
Q 037847          367 VLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY-MENLQELELESCNLEEMKIDSTEEVKKLFRNG  445 (542)
Q Consensus       367 ~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  445 (542)
                                                               ...+.. ...++.|++++|.+.+++...+.         
T Consensus       146 -----------------------------------------~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~---------  175 (350)
T 4ay9_X          146 -----------------------------------------RNSFVGLSFESVILWLNKNGIQEIHNSAFN---------  175 (350)
T ss_dssp             -----------------------------------------TTSSTTSBSSCEEEECCSSCCCEECTTSST---------
T ss_pred             -----------------------------------------ccchhhcchhhhhhccccccccCCChhhcc---------
Confidence                                                     001111 23577788888888776544332         


Q ss_pred             ccccCEEEEccCCC-CCcc--hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccC
Q 037847          446 FRNLNTVVLRSCRG-KDLT--WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY  522 (542)
Q Consensus       446 l~~L~~L~L~~c~~-~~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  522 (542)
                      ..+|++|.+.++.. ..++  .++.+++|++|+|++|+++.++.               ..|.+|+.|.+.++.+++++|
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---------------~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS---------------YGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---------------SSCTTCCEEECTTCTTCCCCC
T ss_pred             ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh---------------hhhccchHhhhccCCCcCcCC
Confidence            46788888876544 4333  36788888999988888887742               347888888888888888886


Q ss_pred             CCCCCCCCcceEeecc
Q 037847          523 PNPQPFPKLKKIQAFH  538 (542)
Q Consensus       523 ~~~~~~p~L~~L~i~~  538 (542)
                      . ...+++|+.+++.+
T Consensus       241 ~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 T-LEKLVALMEASLTY  255 (350)
T ss_dssp             C-TTTCCSCCEEECSC
T ss_pred             C-chhCcChhhCcCCC
Confidence            3 56788888888754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=3.4e-17  Score=159.27  Aligned_cols=206  Identities=17%  Similarity=0.125  Sum_probs=105.6

Q ss_pred             CCCCccEEEccCccccc-ccchhh-ccCCCccEEEecCCCCCCcCccccCCC-----CCCCEEeccCCCCCccc-HHhhc
Q 037847          226 TCPRLVTLLLDGNRIEE-ITDGFF-QSLSTLRVLSLRGNFPPSTLPSGISGL-----VSLHHLDLSSTDITGLP-QELKA  297 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~i~~lp-~~i~~  297 (542)
                      ++++|++|++++|.+.. .+..++ ..+++|++|++++| .+...|..++.+     ++|++|++++|.++.+| ..+++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            45666666666666653 233211 56666666666666 344445555544     66666666666666654 55666


Q ss_pred             CCCCCEEeccCCcccCc--cchh-hcCCCCCCcEEeccCccccccccCCCCccccCCCcchh-HhhccccCCceeeeEec
Q 037847          298 LEKLRYLNLDYAFHLSI--IPHQ-LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLM-KELLGLKHLNVLSWSFG  373 (542)
Q Consensus       298 l~~L~~L~l~~~~~~~~--lp~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~~l~~~~~  373 (542)
                      +++|++|++++|.....  +|.. .++.+++|++|++++|.+.+.             .... .-+..+++|+.|+++.+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-------------SGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-------------HHHHHHHHHTTCCCSEEECTTS
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-------------HHHHHHHHhcCCCCCEEECCCC
Confidence            66666666666633222  2222 015666666666666654310             0011 11122333333333322


Q ss_pred             chHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEE
Q 037847          374 SSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVV  453 (542)
Q Consensus       374 ~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  453 (542)
                      ....                           ......+..+++|++|++++|.+..++.           ..+++|++|+
T Consensus       239 ~l~~---------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-----------~~~~~L~~L~  280 (312)
T 1wwl_A          239 SLRD---------------------------AAGAPSCDWPSQLNSLNLSFTGLKQVPK-----------GLPAKLSVLD  280 (312)
T ss_dssp             CCCS---------------------------SCCCSCCCCCTTCCEEECTTSCCSSCCS-----------SCCSEEEEEE
T ss_pred             cCCc---------------------------ccchhhhhhcCCCCEEECCCCccChhhh-----------hccCCceEEE
Confidence            1000                           0000112234667777777776664321           1125677777


Q ss_pred             EccCCCCCcchhhhccCcceEEEeccchhh
Q 037847          454 LRSCRGKDLTWLVFVQNLKQLNMQGFTMEE  483 (542)
Q Consensus       454 L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~  483 (542)
                      +++|.+...+.+..+++|++|+|++|.+++
T Consensus       281 Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          281 LSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             CCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence            777766333446667777777777766553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=3.2e-19  Score=183.67  Aligned_cols=129  Identities=21%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             cceEEEeecCCcCCCC--C-CCCCCCccEEEccCcccccc----cchhhccCCCccEEEecCCCCCCc-CccccC-CCC-
Q 037847          207 GAKRISLTANGIGSLS--E-IPTCPRLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPPST-LPSGIS-GLV-  276 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-lp~~i~-~l~-  276 (542)
                      .++.|++.++.+...+  . +..+++|++|++++|.+...    .+..+..+++|++|++++|. +.. .+..+. .+. 
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCS
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhh
Confidence            4555555555544321  1 34455566666666654421    12224455666666666652 221 121221 222 


Q ss_pred             ---CCCEEeccCCCCC-----cccHHhhcCCCCCEEeccCCcccCccc----hhhcCCCCCCcEEeccCccc
Q 037847          277 ---SLHHLDLSSTDIT-----GLPQELKALEKLRYLNLDYAFHLSIIP----HQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       277 ---~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp----~~~~~~l~~L~~L~l~~~~~  336 (542)
                         +|++|++++|.++     .+|..+.++++|++|++++|......+    .......++|++|++++|.+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  154 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL  154 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence               4666666666555     245555566666666666653211111    11112234566666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=5e-17  Score=151.68  Aligned_cols=138  Identities=14%  Similarity=0.241  Sum_probs=119.3

Q ss_pred             cccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcc-cccccchhhccCCCccEEEecC-CCCCCcCc-c
Q 037847          196 LTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNR-IEEITDGFFQSLSTLRVLSLRG-NFPPSTLP-S  270 (542)
Q Consensus       196 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~lp-~  270 (542)
                      +..+|.  -...++.+++.++.+..++.  +.++++|++|++++|. ++.+++..|..+++|++|++++ | .+..+| .
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD   99 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence            566666  33589999999999998864  8899999999999996 8888887799999999999998 6 677766 4


Q ss_pred             ccCCCCCCCEEeccCCCCCcccHHhhcCCCCC---EEeccCCcccCccchhhcCCCCCCc-EEeccCcccc
Q 037847          271 GISGLVSLHHLDLSSTDITGLPQELKALEKLR---YLNLDYAFHLSIIPHQLISCFSKLE-VLRLCGCGRF  337 (542)
Q Consensus       271 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~l~~~~~~~~lp~~~~~~l~~L~-~L~l~~~~~~  337 (542)
                      .+..+++|++|++++|.++.+|. +..+++|+   +|++++|..+..+|...+..+++|+ +|++++|.+.
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            68899999999999999999997 88888888   9999999667778876688899999 9999888754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=1.1e-18  Score=179.65  Aligned_cols=312  Identities=17%  Similarity=0.124  Sum_probs=177.2

Q ss_pred             cccceEEEeecCCcCCC--C----CCCCCC-CccEEEccCcccccc----cchhhccCCCccEEEecCCCCCC-cCcccc
Q 037847          205 WEGAKRISLTANGIGSL--S----EIPTCP-RLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPPS-TLPSGI  272 (542)
Q Consensus       205 ~~~l~~l~l~~~~~~~~--~----~~~~~~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-~lp~~i  272 (542)
                      .++++.|++++|.+...  .    .+.... +|++|++++|.+...    .+..+..+++|++|++++|. +. ..+..+
T Consensus        55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l  133 (461)
T 1z7x_W           55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLL  133 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHH
T ss_pred             CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHH
Confidence            35677777777665431  1    111111 577777777766532    24446677777777777773 32 112211


Q ss_pred             -----CCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCcc-chh----hcCCCCCCcEEeccCcccc
Q 037847          273 -----SGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSII-PHQ----LISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       273 -----~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l-p~~----~~~~l~~L~~L~l~~~~~~  337 (542)
                           ....+|++|++++|.++.     ++..+..+++|++|++++|. +... +..    .....++|++|++++|.+.
T Consensus       134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence                 224567777777776664     45556667777777777774 3221 111    1113557777777777654


Q ss_pred             ccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHH--HHhhc-CchhhccceeEEeccccCCCCCc--eecccc
Q 037847          338 GVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAV--QKFLK-YPKLVSITQSVWVECGTYTRPPF--NVLHLA  412 (542)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~--~~l~~-~~~~~~~l~~l~l~~~~~~~~~~--~~~~l~  412 (542)
                      ..           ........+..+++|+.|+++.+.....  ..+.. .......++.|++.++..+....  ....+.
T Consensus       213 ~~-----------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  281 (461)
T 1z7x_W          213 SD-----------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  281 (461)
T ss_dssp             TT-----------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             HH-----------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence            21           0112345567788888888887754321  11111 11124567888887764311100  112345


Q ss_pred             cccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC-----cchhhhccCcceEEEeccchhhhcc
Q 037847          413 YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD-----LTWLVFVQNLKQLNMQGFTMEEIIS  486 (542)
Q Consensus       413 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~-----~~~l~~l~~L~~L~L~~~~l~~~~~  486 (542)
                      .+++|++|++++|.+....+..+..   ......++|++|++++|.+ ..     +..+..+++|++|+|++|.+.+...
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCE---TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHH---HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             hCCCcceEECCCCCCchHHHHHHHH---HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence            5788999999998876532221111   1112236899999999887 21     2345677899999999888776533


Q ss_pred             cccccccccccCCcCCCCCccceeecccCCccc-----ccCCCCCCCCCcceEeeccCC
Q 037847          487 VEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK-----SVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~p~L~~L~i~~C~  540 (542)
                      ......       -....++|++|++.+|. +.     .++.....+++|++|++++|+
T Consensus       359 ~~l~~~-------l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          359 RELCQG-------LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHH-------HTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHH-------HcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            111000       11126688888888873 44     344344457888888888774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=6.5e-17  Score=155.39  Aligned_cols=102  Identities=25%  Similarity=0.338  Sum_probs=46.5

Q ss_pred             CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEe
Q 037847          226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN  305 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~  305 (542)
                      .+++|+.|++++|.+..++.  +..+++|++|++++| .+..++. ++.+++|++|++++|.++.+|. +..+++|++|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence            33444444444444443322  444444555555544 3333433 4444555555555554444432 44455555555


Q ss_pred             ccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847          306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                      +++| .+..++.  +..+++|++|++++|.
T Consensus       119 L~~n-~i~~~~~--l~~l~~L~~L~l~~n~  145 (291)
T 1h6t_A          119 LEHN-GISDING--LVHLPQLESLYLGNNK  145 (291)
T ss_dssp             CTTS-CCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             CCCC-cCCCChh--hcCCCCCCEEEccCCc
Confidence            5544 3333332  4444555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=154.57  Aligned_cols=228  Identities=16%  Similarity=0.088  Sum_probs=118.5

Q ss_pred             cceEEEeecCCcCC-----CCCCCCCCCccEEEccCcccccccchhh--ccCCCccEEEecCCCCCCcCc----cccCCC
Q 037847          207 GAKRISLTANGIGS-----LSEIPTCPRLVTLLLDGNRIEEITDGFF--QSLSTLRVLSLRGNFPPSTLP----SGISGL  275 (542)
Q Consensus       207 ~l~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~lp----~~i~~l  275 (542)
                      .++.+.+....+..     +.....+++|+.|++++|.+....+..+  ..+++|++|++++|......|    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            35555555554432     1112234457777777776655444434  666777777777773332222    234456


Q ss_pred             CCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCc--cchh-hcCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847          276 VSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSI--IPHQ-LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG  351 (542)
Q Consensus       276 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~--lp~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  351 (542)
                      ++|++|++++|.+..+| ..++.+++|++|++++|.....  ++.. .++.+++|++|++++|.+...            
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------------  212 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP------------  212 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH------------
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch------------
Confidence            67777777777776644 4566777777777777732221  2211 135667777777777665310            


Q ss_pred             CcchhHh-hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccce
Q 037847          352 AEPLMKE-LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEM  430 (542)
Q Consensus       352 ~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  430 (542)
                       +..... ++.+++|+.|+++.+....                         ..+.....+..+++|++|++++|.+..+
T Consensus       213 -~~~~~~l~~~l~~L~~L~Ls~N~l~~-------------------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~l  266 (310)
T 4glp_A          213 -TGVCAALAAAGVQPHSLDLSHNSLRA-------------------------TVNPSAPRCMWSSALNSLNLSFAGLEQV  266 (310)
T ss_dssp             -HHHHHHHHHHTCCCSSEECTTSCCCC-------------------------CCCSCCSSCCCCTTCCCEECCSSCCCSC
T ss_pred             -HHHHHHHHhcCCCCCEEECCCCCCCc-------------------------cchhhHHhccCcCcCCEEECCCCCCCch
Confidence             011111 2333444444444322100                         0000011122235777777777766653


Q ss_pred             eeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhh
Q 037847          431 KIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEE  483 (542)
Q Consensus       431 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~  483 (542)
                      +.           ..+++|+.|+|++|.+..++.+..+++|+.|+|++|.+++
T Consensus       267 p~-----------~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          267 PK-----------GLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CS-----------CCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             hh-----------hhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence            21           1136677777777776433445666777777777766543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=169.32  Aligned_cols=163  Identities=20%  Similarity=0.347  Sum_probs=133.3

Q ss_pred             CCeeec---CCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcc
Q 037847            3 AEKLEV---YSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTS   79 (542)
Q Consensus         3 ~~~~~l---~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~   79 (542)
                      +..|++   ++|+++||++||.+.++...    ....+.+.+|+++|+|+||||+.+|+.|+..  ...|+.+++.+...
T Consensus       275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~  348 (591)
T 1z6t_A          275 GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNK  348 (591)
T ss_dssp             SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSC
T ss_pred             CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHh
Confidence            345666   48999999999999987532    2224678999999999999999999999884  35799998888765


Q ss_pred             cCC-C----CCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhc
Q 037847           80 ASK-F----SGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQAC  154 (542)
Q Consensus        80 ~~~-~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~  154 (542)
                      ... .    ......+..++..||+.||+ +.|.||+++|+||+|+.|+.+.++..|.+++     +.+..++++|++++
T Consensus       349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----~~~~~~l~~L~~~~  422 (591)
T 1z6t_A          349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET-----EEVEDILQEFVNKS  422 (591)
T ss_dssp             CCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTT
T ss_pred             HHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH-----HHHHHHHHHHHhCc
Confidence            432 1    11224789999999999999 8999999999999999999999999997642     46788999999999


Q ss_pred             ccccc---CCCeEEeehHHHHHHHHH
Q 037847          155 LLEEE---GDDHVKMHDMIREMSLWI  177 (542)
Q Consensus       155 l~~~~---~~~~~~mhdl~~~~~~~i  177 (542)
                      +++..   ....|+||+++++++...
T Consensus       423 Ll~~~~~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          423 LLFCDRNGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             SSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred             CeEEecCCCccEEEEcHHHHHHHHhh
Confidence            99863   334799999999999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=3e-17  Score=174.55  Aligned_cols=126  Identities=21%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             cccceEEEeecCCcCCCC------CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC---CcCccccCCC
Q 037847          205 WEGAKRISLTANGIGSLS------EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP---STLPSGISGL  275 (542)
Q Consensus       205 ~~~l~~l~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~lp~~i~~l  275 (542)
                      +..++.|++.++.+..+.      .+.++++|++|++++|.+..++ ..+..+++|+.|+++++...   ...+..++.+
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            355666666665554221      1235566666666666655544 33566666666666543221   2333455566


Q ss_pred             CCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEecc
Q 037847          276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLC  332 (542)
Q Consensus       276 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~  332 (542)
                      .+|+.|+++++....+|..+..+++|++|++++|. +. ......+..+++|++|++.
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence            66666666665555566667777777777777774 32 1121235667777777776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=8.8e-17  Score=169.30  Aligned_cols=38  Identities=21%  Similarity=0.184  Sum_probs=17.7

Q ss_pred             ccccCEEEEccCCCCCcchhhhccCcceEEEeccchhh
Q 037847          446 FRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEE  483 (542)
Q Consensus       446 l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~  483 (542)
                      +++|+.|+|++|.+..++.+..+++|+.|+|++|.+..
T Consensus       174 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence            44444444444444333444445555555555544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=5.4e-17  Score=159.70  Aligned_cols=221  Identities=17%  Similarity=0.161  Sum_probs=140.4

Q ss_pred             cceEEEeecCCcCCCCCCCCC--CCccEEEccCcccccccchhhccCCCccEEEecCCCCCC-c-CccccCCCCCCCEEe
Q 037847          207 GAKRISLTANGIGSLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS-T-LPSGISGLVSLHHLD  282 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~-lp~~i~~l~~L~~L~  282 (542)
                      ..+++++.++.+.. ..+..+  ++++.|++++|.+...++. +..+++|++|++++|. +. . +|..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEe
Confidence            35677777765541 112333  6788888888877766655 4568888888888884 43 3 677778888888888


Q ss_pred             ccCCCCCc-ccHHhhcCCCCCEEeccCCcccC--ccchhhcCCCCCCcEEeccCc-cccccccCCCCccccCCCcchhHh
Q 037847          283 LSSTDITG-LPQELKALEKLRYLNLDYAFHLS--IIPHQLISCFSKLEVLRLCGC-GRFGVIKGKEGNVLCDGAEPLMKE  358 (542)
Q Consensus       283 l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~--~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  358 (542)
                      +++|.++. .|..++.+++|++|++++|..+.  .+|.. +.++++|++|++++| .+..              ......
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~--------------~~~~~~  189 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE--------------KHVQVA  189 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH--------------HHHHHH
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh--------------HHHHHH
Confidence            88887774 67778888888888888885454  25543 677888888888888 5431              113344


Q ss_pred             hcccc-CCceeeeEecch-HHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccC-ccceeeccc
Q 037847          359 LLGLK-HLNVLSWSFGSS-LAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCN-LEEMKIDST  435 (542)
Q Consensus       359 l~~L~-~L~~l~~~~~~~-~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~  435 (542)
                      +..++ +|+.|+++.+.. .....+.                          ..+..+++|++|++++|. +....+..+
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~--------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLS--------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHH--------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHH--------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence            66677 788777776531 1111111                          123345677777777776 332222111


Q ss_pred             hhhcccccccccccCEEEEccCCC---CCcchhhhccCcceEEEecc
Q 037847          436 EEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQGF  479 (542)
Q Consensus       436 ~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~  479 (542)
                              ..+++|++|++++|..   ..+..++.+++|++|+|+++
T Consensus       244 --------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          244 --------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             --------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             --------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence                    2356777777777743   22334566777777777766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=8.4e-17  Score=161.50  Aligned_cols=244  Identities=16%  Similarity=0.090  Sum_probs=106.7

Q ss_pred             CCCCccEEEccCcccccccch----hhccCCCccEEEecCCCCCC----cCcccc-------CCCCCCCEEeccCCCCCc
Q 037847          226 TCPRLVTLLLDGNRIEEITDG----FFQSLSTLRVLSLRGNFPPS----TLPSGI-------SGLVSLHHLDLSSTDITG  290 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~i~~  290 (542)
                      .+++|+.|++++|.+......    .+..+++|++|++++| .+.    .+|..+       ..+++|++|++++|.++.
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            445555556655554432211    1345555666666554 222    223332       455566666666655554


Q ss_pred             -----ccHHhhcCCCCCEEeccCCcccC----ccchhhcCCC---------CCCcEEeccCccccccccCCCCccccCCC
Q 037847          291 -----LPQELKALEKLRYLNLDYAFHLS----IIPHQLISCF---------SKLEVLRLCGCGRFGVIKGKEGNVLCDGA  352 (542)
Q Consensus       291 -----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  352 (542)
                           +|..+.++++|++|++++|....    .++.. +..+         ++|++|++++|.+...           ..
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-----------~~  176 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLENG-----------SM  176 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTGG-----------GH
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCcH-----------HH
Confidence                 45555556666666665553211    11111 2222         5566666655554310           00


Q ss_pred             cchhHhhccccCCceeeeEecchH--HHHHhhc-CchhhccceeEEeccccCCCC--CceecccccccccceeeecccCc
Q 037847          353 EPLMKELLGLKHLNVLSWSFGSSL--AVQKFLK-YPKLVSITQSVWVECGTYTRP--PFNVLHLAYMENLQELELESCNL  427 (542)
Q Consensus       353 ~~~~~~l~~L~~L~~l~~~~~~~~--~~~~l~~-~~~~~~~l~~l~l~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~  427 (542)
                      ......+..+++|+.|+++.+...  ....+.. .....+.++.|++.++..+..  ......+..+++|++|++++|.+
T Consensus       177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            111133445555555555544322  1111111 111122233333322221000  00011344556677777777766


Q ss_pred             cceeeccchhhcccccccccccCEEEEccCCC-C-----Ccchh-hhccCcceEEEeccchhhh
Q 037847          428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-K-----DLTWL-VFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~-----~~~~l-~~l~~L~~L~L~~~~l~~~  484 (542)
                      .......+.  ..+....+++|+.|+|++|.+ .     .+..+ .++++|++|+|++|.+...
T Consensus       257 ~~~~~~~l~--~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          257 SARGAAAVV--DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             CHHHHHHHH--HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             chhhHHHHH--HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            542111000  001012256677777777766 3     22233 3467777777777666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.65  E-value=2.2e-15  Score=141.52  Aligned_cols=129  Identities=22%  Similarity=0.275  Sum_probs=100.4

Q ss_pred             cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847          207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST  286 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~  286 (542)
                      ..+.+++.++.+..+|... .++++.|++++|.+..+++..+..+++|++|++++|......|..+..+.+|++|++++|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            4567888888888877532 268889999999888887777888899999999998433334445788889999999998


Q ss_pred             CCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          287 DITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       287 ~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      .++.+|. .+..+++|++|++++| .+..+|...+..+++|++|++++|.+.
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC
Confidence            8888764 4678889999999888 666777765778888888888888654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=3.9e-17  Score=173.65  Aligned_cols=283  Identities=12%  Similarity=0.050  Sum_probs=137.8

Q ss_pred             CCCCccEEEccCcccccc----cchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCC----CcccHHhhc
Q 037847          226 TCPRLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI----TGLPQELKA  297 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i----~~lp~~i~~  297 (542)
                      .+++|++|++++|.+...    .+..+..+++|++|++++| .+..+|..+..+++|++|+++....    ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            345555555555544311    1122344555555555555 3444555555555555555543211    123334455


Q ss_pred             CCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHH
Q 037847          298 LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLA  377 (542)
Q Consensus       298 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~  377 (542)
                      +++|+.|+++++ ....+|.. +..+++|++|++++|.+...              ....-+..+++|+.|++. + ...
T Consensus       269 ~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~--------------~~~~~~~~~~~L~~L~L~-~-~~~  330 (592)
T 3ogk_B          269 PRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETE--------------DHCTLIQKCPNLEVLETR-N-VIG  330 (592)
T ss_dssp             CTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHH--------------HHHHHHTTCTTCCEEEEE-G-GGH
T ss_pred             cccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHH--------------HHHHHHHhCcCCCEEecc-C-ccC
Confidence            555555555554 33445553 56677888888887764311              112235667777777776 2 222


Q ss_pred             HHHhhcCchhhccceeEEecc----------ccCCCCCceec-ccccccccceeeecccCccceeeccchh---------
Q 037847          378 VQKFLKYPKLVSITQSVWVEC----------GTYTRPPFNVL-HLAYMENLQELELESCNLEEMKIDSTEE---------  437 (542)
Q Consensus       378 ~~~l~~~~~~~~~l~~l~l~~----------~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~---------  437 (542)
                      ...+.......+.++.|.+.+          +.. ....... ....+++|++|++..+.+....+..+..         
T Consensus       331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~  409 (592)
T 3ogk_B          331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL-VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR  409 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC-CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred             HHHHHHHHHhCCCCCEEEeecCccccccccccCc-cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence            222222223345567777763          211 0000011 1223556666666444433211110000         


Q ss_pred             ---------hcc--------cccccccccCEEEEccCC--C--CCcchhh-hccCcceEEEeccchhhhccccccccccc
Q 037847          438 ---------VKK--------LFRNGFRNLNTVVLRSCR--G--KDLTWLV-FVQNLKQLNMQGFTMEEIISVEKLSDISE  495 (542)
Q Consensus       438 ---------~~~--------~~~~~l~~L~~L~L~~c~--~--~~~~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~~  495 (542)
                               .+.        .....+++|++|++++|.  +  ..+..+. .+++|++|+|++|.+++...         
T Consensus       410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---------  480 (592)
T 3ogk_B          410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL---------  480 (592)
T ss_dssp             EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH---------
T ss_pred             EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH---------
Confidence                     000        001235566666665443  2  2222333 35666666666665544221         


Q ss_pred             ccCCcCCCCCccceeecccCCcccc--cCCCCCCCCCcceEeeccCC
Q 037847          496 VIGSEHNFFPRLEYLTMWRGTNLKS--VYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       496 ~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~p~L~~L~i~~C~  540 (542)
                        +.....+++|++|++.+|+ +..  ++.....+|+|++|++++|+
T Consensus       481 --~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          481 --MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             --HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             --HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence              1133557888888888887 432  22223357889999988885

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=1.6e-15  Score=145.61  Aligned_cols=149  Identities=26%  Similarity=0.333  Sum_probs=124.2

Q ss_pred             CcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCC
Q 037847          200 PKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH  279 (542)
Q Consensus       200 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~  279 (542)
                      .....+.+++.+++.++.+..++.+..+++|++|++++|.++.+++  +..+++|++|++++| .+..+| .++.+.+|+
T Consensus        40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~  115 (291)
T 1h6t_A           40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLK  115 (291)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCC
T ss_pred             cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCC
Confidence            3445678899999999999999889999999999999999988776  889999999999999 677776 599999999


Q ss_pred             EEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhh
Q 037847          280 HLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKEL  359 (542)
Q Consensus       280 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  359 (542)
                      +|++++|.++.++ .+..+++|++|++++| .+..++.  ++.+++|++|++++|.+.+.                 ..+
T Consensus       116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~-----------------~~l  174 (291)
T 1h6t_A          116 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI-----------------VPL  174 (291)
T ss_dssp             EEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC-----------------GGG
T ss_pred             EEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc-----------------hhh
Confidence            9999999999884 6889999999999999 5666754  88999999999999986531                 015


Q ss_pred             ccccCCceeeeEec
Q 037847          360 LGLKHLNVLSWSFG  373 (542)
Q Consensus       360 ~~L~~L~~l~~~~~  373 (542)
                      ..+++|+.|+++.+
T Consensus       175 ~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          175 AGLTKLQNLYLSKN  188 (291)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cCCCccCEEECCCC
Confidence            56666666666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.63  E-value=1.3e-16  Score=157.07  Aligned_cols=229  Identities=20%  Similarity=0.178  Sum_probs=168.4

Q ss_pred             ccceEEEeecCCcCCC-CCCCCCCCccEEEccCcccccc-cchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847          206 EGAKRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEI-TDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL  283 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l  283 (542)
                      ..++.+++.++.+... +.+..+++|+.|++++|.+... .+..+..+++|++|++++|......|..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            6889999999988765 4577899999999999987653 4455889999999999999544467888999999999999


Q ss_pred             cCC-CCCc--ccHHhhcCCCCCEEeccCCcccCc--cchhhcCCCC-CCcEEeccCcc--ccccccCCCCccccCCCcch
Q 037847          284 SST-DITG--LPQELKALEKLRYLNLDYAFHLSI--IPHQLISCFS-KLEVLRLCGCG--RFGVIKGKEGNVLCDGAEPL  355 (542)
Q Consensus       284 ~~~-~i~~--lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~  355 (542)
                      ++| .++.  +|..+.++++|++|++++|..+..  ++.. +..++ +|++|++++|.  +.              ....
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~--------------~~~l  214 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQ--------------KSDL  214 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSC--------------HHHH
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCC--------------HHHH
Confidence            999 7884  788899999999999999944443  4554 78899 99999999985  22              1233


Q ss_pred             hHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccc
Q 037847          356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDST  435 (542)
Q Consensus       356 ~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  435 (542)
                      ...+.++++|+.|+++.+....                           ......+..+++|++|++++|....  ....
T Consensus       215 ~~~~~~~~~L~~L~l~~~~~l~---------------------------~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~  265 (336)
T 2ast_B          215 STLVRRCPNLVHLDLSDSVMLK---------------------------NDCFQEFFQLNYLQHLSLSRCYDII--PETL  265 (336)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCC---------------------------GGGGGGGGGCTTCCEEECTTCTTCC--GGGG
T ss_pred             HHHHhhCCCCCEEeCCCCCcCC---------------------------HHHHHHHhCCCCCCEeeCCCCCCCC--HHHH
Confidence            4456678888888887554110                           1112345667999999999996221  1111


Q ss_pred             hhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcc
Q 037847          436 EEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIIS  486 (542)
Q Consensus       436 ~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~  486 (542)
                           .....+++|+.|++++| .  ..+..+.  .+|+.|++++|.++....
T Consensus       266 -----~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          266 -----LELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             -----GGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred             -----HHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccC
Confidence                 11244899999999999 4  3333332  346667788888877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=5.3e-16  Score=150.69  Aligned_cols=110  Identities=18%  Similarity=0.169  Sum_probs=82.0

Q ss_pred             CCCccEEEccCcccccccc-h--hhccCCCccEEEecCCCCCCcCcccc--CCCCCCCEEeccCCCCCc-cc----HHhh
Q 037847          227 CPRLVTLLLDGNRIEEITD-G--FFQSLSTLRVLSLRGNFPPSTLPSGI--SGLVSLHHLDLSSTDITG-LP----QELK  296 (542)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~~-~--~~~~l~~L~~L~l~~~~~~~~lp~~i--~~l~~L~~L~l~~~~i~~-lp----~~i~  296 (542)
                      ...++.+.+.++.+....- .  .+..+++|++|++++|......|..+  +.+.+|++|++++|.++. .|    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3456777877775532110 0  02245679999999996566778777  899999999999998886 22    3456


Q ss_pred             cCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          297 ALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       297 ~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      .+++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus       143 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          143 LKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGL  182 (310)
T ss_dssp             BCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred             hccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCc
Confidence            7999999999999 456666545889999999999999764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=2.5e-15  Score=158.26  Aligned_cols=183  Identities=17%  Similarity=0.239  Sum_probs=130.2

Q ss_pred             EEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCccc
Q 037847          233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHL  312 (542)
Q Consensus       233 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~  312 (542)
                      +.+..+.+..+..  +..+.+|+.|++++| .+..+| .++.+++|++|+|++|.+..+|. +..+++|++|++++| .+
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KI   99 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CC
Confidence            3344444444333  456677777777777 566666 57778888888888887777766 778888888888887 56


Q ss_pred             CccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccce
Q 037847          313 SIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQ  392 (542)
Q Consensus       313 ~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~  392 (542)
                      ..+|.  +..+++|++|++++|.+.+                                                      
T Consensus       100 ~~l~~--l~~l~~L~~L~Ls~N~l~~------------------------------------------------------  123 (605)
T 1m9s_A          100 KDLSS--LKDLKKLKSLSLEHNGISD------------------------------------------------------  123 (605)
T ss_dssp             CCCTT--STTCTTCCEEECTTSCCCC------------------------------------------------------
T ss_pred             CCChh--hccCCCCCEEEecCCCCCC------------------------------------------------------
Confidence            66664  7778888888887776431                                                      


Q ss_pred             eEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcc
Q 037847          393 SVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLK  472 (542)
Q Consensus       393 ~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~  472 (542)
                                     ...+..+++|+.|+|++|.+..+  ..+        ..+++|+.|+|++|.+..++++..+++|+
T Consensus       124 ---------------l~~l~~l~~L~~L~Ls~N~l~~l--~~l--------~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~  178 (605)
T 1m9s_A          124 ---------------INGLVHLPQLESLYLGNNKITDI--TVL--------SRLTKLDTLSLEDNQISDIVPLAGLTKLQ  178 (605)
T ss_dssp             ---------------CGGGGGCTTCSEEECCSSCCCCC--GGG--------GSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             ---------------CccccCCCccCEEECCCCccCCc--hhh--------cccCCCCEEECcCCcCCCchhhccCCCCC
Confidence                           01123456777777777777653  112        34789999999999884444489999999


Q ss_pred             eEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          473 QLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       473 ~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                      .|+|++|.+.+++              ....+++|+.|++.+|+
T Consensus       179 ~L~Ls~N~i~~l~--------------~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          179 NLYLSKNHISDLR--------------ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EEECCSSCCCBCG--------------GGTTCTTCSEEECCSEE
T ss_pred             EEECcCCCCCCCh--------------HHccCCCCCEEEccCCc
Confidence            9999999988763              45668999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.61  E-value=9.5e-17  Score=161.10  Aligned_cols=229  Identities=17%  Similarity=0.139  Sum_probs=131.6

Q ss_pred             cccccccchhhccCCCccEEEecCCCCCCc----CccccCCCCCCCEEeccCCCCCc----ccHHh-------hcCCCCC
Q 037847          238 NRIEEITDGFFQSLSTLRVLSLRGNFPPST----LPSGISGLVSLHHLDLSSTDITG----LPQEL-------KALEKLR  302 (542)
Q Consensus       238 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----lp~~i~~l~~L~~L~l~~~~i~~----lp~~i-------~~l~~L~  302 (542)
                      ..+..+... +..+++|++|++++|.....    ++..+..+++|++|++++|.+..    +|..+       .++++|+
T Consensus        19 ~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~   97 (386)
T 2ca6_A           19 EDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   97 (386)
T ss_dssp             HHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence            334444433 77889999999999943333    34457789999999999975553    45555       7899999


Q ss_pred             EEeccCCcccC----ccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccc---------cCCceee
Q 037847          303 YLNLDYAFHLS----IIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGL---------KHLNVLS  369 (542)
Q Consensus       303 ~L~l~~~~~~~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~~l~  369 (542)
                      +|++++|....    .+|.. +..+++|++|++++|.+....+           ......+..+         ++|+.|+
T Consensus        98 ~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-----------~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           98 TVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-----------AKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             EEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-----------HHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             EEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-----------HHHHHHHHHHhhhhhcccCCCCcEEE
Confidence            99999995433    26665 7889999999999998742111           1122234444         7888888


Q ss_pred             eEecchH--HHHHhhcCchhhccceeEEeccccCCCCCc--eec-ccccccccceeeecccCccceeeccchhhcccccc
Q 037847          370 WSFGSSL--AVQKFLKYPKLVSITQSVWVECGTYTRPPF--NVL-HLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN  444 (542)
Q Consensus       370 ~~~~~~~--~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  444 (542)
                      ++.+...  ....+.......+.++.|.+.++.......  ... .+..+++|++|++++|.+.......+.    ....
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----~~l~  241 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----IALK  241 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----HHGG
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----HHHc
Confidence            8876542  222222222223355566655543210000  011 344556666666666665320000000    0012


Q ss_pred             cccccCEEEEccCCCCC------cchhhh--ccCcceEEEeccchhh
Q 037847          445 GFRNLNTVVLRSCRGKD------LTWLVF--VQNLKQLNMQGFTMEE  483 (542)
Q Consensus       445 ~l~~L~~L~L~~c~~~~------~~~l~~--l~~L~~L~L~~~~l~~  483 (542)
                      .+++|++|+|++|.+..      +..+..  +++|++|+|++|.+..
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            35566666666666511      122322  5666666666666555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=8.8e-16  Score=152.55  Aligned_cols=109  Identities=20%  Similarity=0.184  Sum_probs=60.0

Q ss_pred             CCccEEEccCcccccccc----hhhccCC-CccEEEecCCCCCCcCccccCCC-----CCCCEEeccCCCCCccc-HH--
Q 037847          228 PRLVTLLLDGNRIEEITD----GFFQSLS-TLRVLSLRGNFPPSTLPSGISGL-----VSLHHLDLSSTDITGLP-QE--  294 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~i~~lp-~~--  294 (542)
                      ++|+.|++++|.+...+.    ..+..++ +|++|++++|......+..++.+     .+|++|++++|.++..+ ..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            346677777766665554    4455666 67777777763222334444443     66777777776666532 22  


Q ss_pred             --hhcC-CCCCEEeccCCcccCccchhh----cCC-CCCCcEEeccCcccc
Q 037847          295 --LKAL-EKLRYLNLDYAFHLSIIPHQL----ISC-FSKLEVLRLCGCGRF  337 (542)
Q Consensus       295 --i~~l-~~L~~L~l~~~~~~~~lp~~~----~~~-l~~L~~L~l~~~~~~  337 (542)
                        +..+ ++|++|++++|. +...+...    +.. .++|++|++++|.+.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence              3334 667777777663 33333211    222 246777777666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=1.2e-14  Score=136.44  Aligned_cols=169  Identities=24%  Similarity=0.343  Sum_probs=139.0

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      .+...+..+..+|.... ..++.|++.++.+..++  .+.++++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus        18 ~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l   95 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QL   95 (251)
T ss_dssp             EEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred             EEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence            34445566666665333 68999999999998875  4889999999999999999988888999999999999999 55


Q ss_pred             CcCc-cccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCC
Q 037847          266 STLP-SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGK  343 (542)
Q Consensus       266 ~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~  343 (542)
                      ..+| ..++.+.+|++|++++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++++|.+.+..+  
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--  172 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--  172 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH--
Confidence            5555 5678999999999999999998876 588999999999999 6778887668999999999999998764322  


Q ss_pred             CCccccCCCcchhHhhccccCCceeeeEecc
Q 037847          344 EGNVLCDGAEPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                                   ..+..+++|+.++++.+.
T Consensus       173 -------------~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          173 -------------GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             -------------TTTTTCTTCCEEECCSCC
T ss_pred             -------------HHHhCCCCCCEEEeeCCc
Confidence                         235677888888887665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=4.8e-15  Score=133.67  Aligned_cols=151  Identities=20%  Similarity=0.233  Sum_probs=128.6

Q ss_pred             cccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847          203 EEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD  282 (542)
Q Consensus       203 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~  282 (542)
                      ..+.+++.+++.++.+..++.+..+++|++|++++|.+...+  .+..+++|++|++++|......|..++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            456789999999999999888899999999999999776654  388999999999999944445788899999999999


Q ss_pred             ccCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847          283 LSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG  361 (542)
Q Consensus       283 l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  361 (542)
                      +++|.++. .|..++.+++|++|++++|..+..+|.  +..+++|++|++++|.+..                 +..+..
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~~l~~  179 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YRGIED  179 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CTTGGG
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hHHhcc
Confidence            99999987 788899999999999999965888884  8999999999999998742                 114678


Q ss_pred             ccCCceeeeEecc
Q 037847          362 LKHLNVLSWSFGS  374 (542)
Q Consensus       362 L~~L~~l~~~~~~  374 (542)
                      +++|+.|+++.+.
T Consensus       180 l~~L~~L~l~~N~  192 (197)
T 4ezg_A          180 FPKLNQLYAFSQT  192 (197)
T ss_dssp             CSSCCEEEECBC-
T ss_pred             CCCCCEEEeeCcc
Confidence            8889999888665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.60  E-value=2.5e-16  Score=156.53  Aligned_cols=264  Identities=11%  Similarity=0.059  Sum_probs=163.4

Q ss_pred             EEccCcccccccchhhccCCCccEEEecCCCCCCcCc-----cccCCCC-CCCEEeccCCCCCcc-cHHhhcC-----CC
Q 037847          233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-----SGISGLV-SLHHLDLSSTDITGL-PQELKAL-----EK  300 (542)
Q Consensus       233 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~i~~l-p~~i~~l-----~~  300 (542)
                      +.++.+.++...+.++...++|++|++++| .+...+     ..+..++ +|++|++++|.++.. +..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            567788887777776777777999999999 566554     5677888 899999999999874 5556664     99


Q ss_pred             CCEEeccCCcccCccchh---hcCCC-CCCcEEeccCccccccccCCCCccccCCCcchhHhhccc-cCCceeeeEecch
Q 037847          301 LRYLNLDYAFHLSIIPHQ---LISCF-SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGL-KHLNVLSWSFGSS  375 (542)
Q Consensus       301 L~~L~l~~~~~~~~lp~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~l~~~~~~~  375 (542)
                      |++|++++|......+..   .+..+ ++|++|++++|.+....           .......+..+ ++|+.|+++.+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-----------SSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-----------HHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-----------HHHHHHHHHhCCCceeEEEccCCcC
Confidence            999999999533333332   13344 89999999999875321           11222334553 6899999987754


Q ss_pred             H--HHHHhhcCch-hhccceeEEeccccCCCCCce-e-cccccc-cccceeeecccCccceeeccchhhccccccccccc
Q 037847          376 L--AVQKFLKYPK-LVSITQSVWVECGTYTRPPFN-V-LHLAYM-ENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNL  449 (542)
Q Consensus       376 ~--~~~~l~~~~~-~~~~l~~l~l~~~~~~~~~~~-~-~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L  449 (542)
                      .  ....+..... ....++.|++.++..+..... . ..+..+ ++|++|++++|.+.......+..   ......++|
T Consensus       151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~---~l~~~~~~L  227 (362)
T 3goz_A          151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY---IFSSIPNHV  227 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---HHHHSCTTC
T ss_pred             CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH---HHhcCCCCc
Confidence            3  1122222111 123678888877653221110 0 123334 58888888888876622211100   000113588


Q ss_pred             CEEEEccCCCCCcc------hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847          450 NTVVLRSCRGKDLT------WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT  516 (542)
Q Consensus       450 ~~L~L~~c~~~~~~------~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  516 (542)
                      ++|+|++|.+...+      .+..+++|++|+|++|.+..+..... ..+    ......+++|+.|++.++.
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-~~l----~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-KAL----GAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-HHH----HTTSTTCCEEEEECTTSCB
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH-HHH----HHHhccCCceEEEecCCCc
Confidence            88888888882221      23567888888888877544332100 000    1244567778888887754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.58  E-value=2.1e-16  Score=168.09  Aligned_cols=84  Identities=10%  Similarity=0.061  Sum_probs=51.7

Q ss_pred             cccccCEEEEccCCC-CCcchhhh-ccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccC
Q 037847          445 GFRNLNTVVLRSCRG-KDLTWLVF-VQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY  522 (542)
Q Consensus       445 ~l~~L~~L~L~~c~~-~~~~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  522 (542)
                      .+++|+.|+++++.. ..+..+.. +++|++|+|++|.+++....           .....+++|+.|++.+|+. ....
T Consensus       430 ~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~  497 (594)
T 2p1m_B          430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKA  497 (594)
T ss_dssp             HCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHH
T ss_pred             hCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHH
Confidence            356777777766222 33444444 77788888877766543221           0124478888888888875 3221


Q ss_pred             --CCCCCCCCcceEeeccCC
Q 037847          523 --PNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       523 --~~~~~~p~L~~L~i~~C~  540 (542)
                        .....+++|++|++++|+
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSC
T ss_pred             HHHHHHhCCCCCEEeeeCCC
Confidence              123457888888888886

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=3.5e-15  Score=141.02  Aligned_cols=98  Identities=23%  Similarity=0.268  Sum_probs=48.6

Q ss_pred             ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCC
Q 037847          230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYA  309 (542)
Q Consensus       230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~  309 (542)
                      +..+.+.++.++.++.  +..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus        21 l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHTCSCTTSEEC--HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred             HHHHHhcCCCcccccc--hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence            3334444444444332  444555555555555 444444 45555555555555555555544 555555555555555


Q ss_pred             cccCccchhhcCCCCCCcEEeccCccc
Q 037847          310 FHLSIIPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       310 ~~~~~lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                       .+..+|.  +.. ++|++|++++|.+
T Consensus        96 -~l~~l~~--~~~-~~L~~L~L~~N~l  118 (263)
T 1xeu_A           96 -RLKNLNG--IPS-ACLSRLFLDNNEL  118 (263)
T ss_dssp             -CCSCCTT--CCC-SSCCEEECCSSCC
T ss_pred             -ccCCcCc--ccc-CcccEEEccCCcc
Confidence             3444443  222 5555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=1.4e-14  Score=143.02  Aligned_cols=233  Identities=18%  Similarity=0.164  Sum_probs=170.9

Q ss_pred             EecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCccc-ccccchhhccCCCccEE-EecCCCCC
Q 037847          190 VRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRI-EEITDGFFQSLSTLRVL-SLRGNFPP  265 (542)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L-~l~~~~~~  265 (542)
                      .-.+.+++.+|.-. ..+++.|++++|.++.++.  +.++++|++|++++|.+ +.++...|.++++++.+ .+.+| .+
T Consensus        15 ~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l   92 (350)
T 4ay9_X           15 LCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NL   92 (350)
T ss_dssp             EEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-TC
T ss_pred             EecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-cc
Confidence            33455677777522 3689999999999999874  78999999999999987 45667778899888764 45555 66


Q ss_pred             CcC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccC
Q 037847          266 STL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKG  342 (542)
Q Consensus       266 ~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~  342 (542)
                      ..+ |..+..+++|++|++++|.++.+|.. .....++..|++.++..+..+|...+..+. .++.|++++|.+....+.
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~  172 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS  172 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence            666 56789999999999999999987653 456678889999887788888876566664 689999999987532111


Q ss_pred             CCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeee
Q 037847          343 KEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  422 (542)
Q Consensus       343 ~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l  422 (542)
                                      .....+|+.+.+..+                          .. ........+..+++|+.|++
T Consensus       173 ----------------~f~~~~L~~l~l~~~--------------------------n~-l~~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          173 ----------------AFNGTQLDELNLSDN--------------------------NN-LEELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             ----------------SSTTEEEEEEECTTC--------------------------TT-CCCCCTTTTTTEECCSEEEC
T ss_pred             ----------------hccccchhHHhhccC--------------------------Cc-ccCCCHHHhccCcccchhhc
Confidence                            111223333333211                          10 11111234567899999999


Q ss_pred             cccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEec
Q 037847          423 ESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQG  478 (542)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~  478 (542)
                      ++|.+..++.           ..+.+|++|.+.++.. ..+|.+..+++|+.+++.+
T Consensus       210 s~N~l~~lp~-----------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          210 SRTRIHSLPS-----------YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             TTSCCCCCCS-----------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CCCCcCccCh-----------hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            9999987543           3378899999988877 7888899999999999976

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=4.4e-14  Score=147.13  Aligned_cols=114  Identities=27%  Similarity=0.388  Sum_probs=89.9

Q ss_pred             cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847          207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST  286 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~  286 (542)
                      +++.|++.++.+..+|... +++|++|++++|.++.++    ..+++|++|++++| .+..+|. ++.  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence            6788888888888877522 378889999988888766    34688889999888 6666887 665  8889999888


Q ss_pred             CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          287 DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      .++.+|.   .+++|++|++++| .+..+|.    .+++|++|++++|.+.
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS
T ss_pred             cCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCC
Confidence            8888887   6888889998888 5666775    4678888888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=3e-16  Score=166.85  Aligned_cols=252  Identities=15%  Similarity=0.096  Sum_probs=133.8

Q ss_pred             CCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC-------CCcccHHhhcCCCCCEE-eccCCcccCccchhhcCC
Q 037847          251 LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD-------ITGLPQELKALEKLRYL-NLDYAFHLSIIPHQLISC  322 (542)
Q Consensus       251 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~-------i~~lp~~i~~l~~L~~L-~l~~~~~~~~lp~~~~~~  322 (542)
                      +++|++|++++|.....+|..+..+++|++|+++.+.       +..++..+.++++|+.| .+.+. ....+|.. +..
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~-~~~  287 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAV-YSV  287 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGG-HHH
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHH-HHh
Confidence            4555555555543333344444445555555543331       12233444555555555 22222 12233332 345


Q ss_pred             CCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEecccc--
Q 037847          323 FSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGT--  400 (542)
Q Consensus       323 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~--  400 (542)
                      +++|++|++++|.+..              .....-+.++++|+.|++..+  .....+.......+.++.|.+..+.  
T Consensus       288 ~~~L~~L~L~~~~l~~--------------~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~  351 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQS--------------YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPF  351 (594)
T ss_dssp             HTTCCEEECTTCCCCH--------------HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred             hCCCCEEEccCCCCCH--------------HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence            6778888887776321              112222557788888888865  2223333333334567788774421  


Q ss_pred             -----CCCCCceeccc-ccccccceeeecccCccceeeccchhhcccccccccccCEEEEc-----cCCC-CCcc-----
Q 037847          401 -----YTRPPFNVLHL-AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR-----SCRG-KDLT-----  463 (542)
Q Consensus       401 -----~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~-----~c~~-~~~~-----  463 (542)
                           ..........+ ..+++|++|.+..+.+....+..+       ...+++|+.|+++     +|.. ...+     
T Consensus       352 g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-------~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~  424 (594)
T 2p1m_B          352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI-------ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF  424 (594)
T ss_dssp             CSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH-------HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred             ccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH-------HhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence                 00111111122 247888888776666654222111       1247899999998     3443 3221     


Q ss_pred             --hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC-C-CCCCCCcceEeeccC
Q 037847          464 --WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP-N-PQPFPKLKKIQAFHC  539 (542)
Q Consensus       464 --~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~-~~~~p~L~~L~i~~C  539 (542)
                        .+..+++|++|+|++ .+.+....           .....+++|+.|++.+|. +..... . ...+|+|++|++++|
T Consensus       425 ~~l~~~~~~L~~L~L~~-~l~~~~~~-----------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          425 GAIVEHCKDLRRLSLSG-LLTDKVFE-----------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             HHHHHHCTTCCEEECCS-SCCHHHHH-----------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHHHhhCCCccEEeecC-cccHHHHH-----------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC
Confidence              155788999999977 44433210           011238899999999986 332111 1 134899999999999


Q ss_pred             C
Q 037847          540 R  540 (542)
Q Consensus       540 ~  540 (542)
                      +
T Consensus       492 ~  492 (594)
T 2p1m_B          492 P  492 (594)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.56  E-value=2.7e-14  Score=128.73  Aligned_cols=146  Identities=20%  Similarity=0.246  Sum_probs=124.6

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST  267 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  267 (542)
                      .+...+..+..++.+..+.+++.|++.+|.+..++.+..+++|++|++++|.+....+..++.+++|++|++++|.....
T Consensus        48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  127 (197)
T 4ezg_A           48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS  127 (197)
T ss_dssp             EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred             EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence            44445666777788888899999999999998888899999999999999999875555589999999999999954445


Q ss_pred             CccccCCCCCCCEEeccCCC-CCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          268 LPSGISGLVSLHHLDLSSTD-ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       268 lp~~i~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      .|..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..++.  +..+++|++|++++|.+.
T Consensus       128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred             hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence            78889999999999999997 88897 7999999999999999 5677773  889999999999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=6.6e-14  Score=129.35  Aligned_cols=142  Identities=30%  Similarity=0.364  Sum_probs=105.9

Q ss_pred             CcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847          193 GVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS  270 (542)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~  270 (542)
                      +..+..+|... ..+++.|++.+|.+..++  .+..+++|+.|++++|.+..+++..|..+++|++|++++| .+..+|.
T Consensus        28 ~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~  105 (229)
T 3e6j_A           28 SKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS  105 (229)
T ss_dssp             TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccCh
Confidence            34445555422 267888888888887763  3677888888888888887777776778888888888888 5555554


Q ss_pred             c-cCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          271 G-ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       271 ~-i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      . +..+.+|++|++++|.++.+|..+..+++|++|++++| .+..+|...+..+++|++|++.+|.+.
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            3 57788888888888888888888888888888888887 566677655777888888888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=2.4e-14  Score=130.30  Aligned_cols=125  Identities=27%  Similarity=0.428  Sum_probs=86.4

Q ss_pred             EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCCCC
Q 037847          210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTDI  288 (542)
Q Consensus       210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~i  288 (542)
                      .++..++.+..+|. .-.++|+.|++++|.++.+++..+..+++|++|++++| .+..+|.. +..+.+|++|++++|.+
T Consensus        11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence            45555566665553 22457788888888777777766777788888888877 45555543 56777888888888777


Q ss_pred             CcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          289 TGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       289 ~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      +.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|.+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence            776654 567778888888777 555666555677777777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=3.9e-14  Score=133.80  Aligned_cols=154  Identities=25%  Similarity=0.315  Sum_probs=131.1

Q ss_pred             ccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCC
Q 037847          195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG  274 (542)
Q Consensus       195 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~  274 (542)
                      ....++.+..+.+++.|++.++.+..++.+..+++|+.|++++|.++.+++  +..+++|++|++++| .+..+|. +..
T Consensus        30 ~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~-~~~  105 (263)
T 1xeu_A           30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNG-IPS  105 (263)
T ss_dssp             CTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTT-CCC
T ss_pred             CcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCc-ccc
Confidence            334445566778999999999999999988999999999999999988877  889999999999999 6777775 334


Q ss_pred             CCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847          275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP  354 (542)
Q Consensus       275 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  354 (542)
                       .+|++|++++|.++.+| .+..+++|++|++++| .++.+|.  ++.+++|++|++++|.+.+.               
T Consensus       106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~---------------  165 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT---------------  165 (263)
T ss_dssp             -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC---------------
T ss_pred             -CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch---------------
Confidence             99999999999999986 5899999999999999 6777774  88999999999999987531               


Q ss_pred             hhHhhccccCCceeeeEecc
Q 037847          355 LMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       355 ~~~~l~~L~~L~~l~~~~~~  374 (542)
                        ..+..+++|+.|+++.+.
T Consensus       166 --~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCc
Confidence              446778889999988765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.53  E-value=8.4e-14  Score=127.75  Aligned_cols=128  Identities=28%  Similarity=0.382  Sum_probs=64.3

Q ss_pred             ccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEe
Q 037847          206 EGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLD  282 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~  282 (542)
                      ..++.|++.+|.+..++  .+..+++|+.|++++|.+..+.+..|..+++|++|++++| .+..+|.. +..+.+|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence            34555555555555443  2445555555555555555544444555555555555555 34444433 34455555555


Q ss_pred             ccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847          283 LSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       283 l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                      +++|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++++|+
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            555555553 334455555555555555 3444443334555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.53  E-value=7.8e-14  Score=145.28  Aligned_cols=186  Identities=20%  Similarity=0.201  Sum_probs=138.9

Q ss_pred             CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccC
Q 037847          229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY  308 (542)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  308 (542)
                      +++.|++++|.++.+|...   +++|++|++++| .+..+|   +.+.+|++|++++|.++.+|. +.+  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence            7899999999998877653   378999999999 677888   557899999999999999988 655  999999999


Q ss_pred             CcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhh
Q 037847          309 AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV  388 (542)
Q Consensus       309 ~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~  388 (542)
                      | .+..+|.    .+++|++|++++|.+.+ +|.                  .+++|+.|+++.+...            
T Consensus       130 N-~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~------------------~l~~L~~L~Ls~N~L~------------  173 (571)
T 3cvr_A          130 N-QLTMLPE----LPALLEYINADNNQLTM-LPE------------------LPTSLEVLSVRNNQLT------------  173 (571)
T ss_dssp             S-CCSCCCC----CCTTCCEEECCSSCCSC-CCC------------------CCTTCCEEECCSSCCS------------
T ss_pred             C-cCCCCCC----cCccccEEeCCCCccCc-CCC------------------cCCCcCEEECCCCCCC------------
Confidence            9 6667886    57899999999998753 221                  3466777777654311            


Q ss_pred             ccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhh
Q 037847          389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVF  467 (542)
Q Consensus       389 ~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~  467 (542)
                                    ..+  .  +.  ++|+.|++++|.+..++.  +..  .+ ....+.|+.|+|++|.+ ..+..+..
T Consensus       174 --------------~lp--~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L-~~~~~~L~~L~Ls~N~l~~lp~~l~~  228 (571)
T 3cvr_A          174 --------------FLP--E--LP--ESLEALDVSTNLLESLPA--VPV--RN-HHSEETEIFFRCRENRITHIPENILS  228 (571)
T ss_dssp             --------------CCC--C--CC--TTCCEEECCSSCCSSCCC--CC-----------CCEEEECCSSCCCCCCGGGGG
T ss_pred             --------------Ccc--h--hh--CCCCEEECcCCCCCchhh--HHH--hh-hcccccceEEecCCCcceecCHHHhc
Confidence                          001  1  22  799999999999887543  210  00 01123339999999999 66666888


Q ss_pred             ccCcceEEEeccchhhhc
Q 037847          468 VQNLKQLNMQGFTMEEII  485 (542)
Q Consensus       468 l~~L~~L~L~~~~l~~~~  485 (542)
                      +++|+.|+|++|.+....
T Consensus       229 l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          229 LDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             SCTTEEEECCSSSCCHHH
T ss_pred             CCCCCEEEeeCCcCCCcC
Confidence            999999999999887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=1.2e-13  Score=126.76  Aligned_cols=149  Identities=21%  Similarity=0.296  Sum_probs=122.6

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI  288 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i  288 (542)
                      +.++..++.+..+|... .++++.|++++|.++.+++..|..+++|++|++++|......|..|..+.+|++|++++|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            46778888888887522 27899999999999999887799999999999999943334488899999999999999999


Q ss_pred             CcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCce
Q 037847          289 TGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV  367 (542)
Q Consensus       289 ~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~  367 (542)
                      +.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+.+..+               ..+..+++|+.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~  156 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------------GTFSPLRAIQT  156 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------TTTTTCTTCCE
T ss_pred             CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECH---------------HHHhCCCCCCE
Confidence            999876 578999999999999 5666655558999999999999998864322               23566788888


Q ss_pred             eeeEecc
Q 037847          368 LSWSFGS  374 (542)
Q Consensus       368 l~~~~~~  374 (542)
                      ++++.+.
T Consensus       157 L~L~~N~  163 (220)
T 2v9t_B          157 MHLAQNP  163 (220)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            8887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=3.5e-13  Score=122.54  Aligned_cols=142  Identities=25%  Similarity=0.400  Sum_probs=120.5

Q ss_pred             CcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847          193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS  270 (542)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~  270 (542)
                      +.....+|.. ...+++.|++.++.+..++.  +..+++|++|++++|.++.+++..+..+++|++|++++| .+..+|.
T Consensus        16 ~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~   93 (208)
T 2o6s_A           16 SQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN   93 (208)
T ss_dssp             SSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCH
Confidence            3444555532 23689999999999998864  789999999999999999988887899999999999999 5666665


Q ss_pred             c-cCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          271 G-ISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       271 ~-i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      . ++.+.+|++|++++|.++.+|.. +.++++|++|++++| .+..+|...+..+++|++|++++|.+.
T Consensus        94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence            4 68999999999999999998765 689999999999999 667777766889999999999999764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=2.1e-13  Score=125.03  Aligned_cols=125  Identities=18%  Similarity=0.300  Sum_probs=63.9

Q ss_pred             EEEeecCCcCCCCCCCCCCCccEEEccCccccccc-chhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCC
Q 037847          210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEIT-DGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTD  287 (542)
Q Consensus       210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~  287 (542)
                      .+++.++.+..+|.. -...++.|++++|.++.++ ...|..+++|++|++++| .+..++. .|+.+.+|++|++++|.
T Consensus        15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc
Confidence            455555555555431 1233455555555555542 233555555666666555 3333332 45555556666665555


Q ss_pred             CCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC
Confidence            5554432 555556666666555 333332223555555666666555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=4.3e-13  Score=122.96  Aligned_cols=146  Identities=22%  Similarity=0.274  Sum_probs=121.3

Q ss_pred             EEecCcccccCCcccccccceEEEeecCCcCCCCC---CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE---IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      +...+..+..+|... ...++.|++.+|.+..++.   +..+++|+.|++++|.++.+++..|..+++|++|++++| .+
T Consensus        16 l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l   93 (220)
T 2v70_A           16 VDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RL   93 (220)
T ss_dssp             EECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             eEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-cc
Confidence            344455666666422 3567899999999998732   678999999999999999998877999999999999999 55


Q ss_pred             CcCc-cccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          266 STLP-SGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       266 ~~lp-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ..+| ..++.+.+|++|++++|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5554 4589999999999999999997 677899999999999999 566664445899999999999999864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=5.8e-13  Score=122.95  Aligned_cols=148  Identities=23%  Similarity=0.250  Sum_probs=123.2

Q ss_pred             ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCC
Q 037847          208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSST  286 (542)
Q Consensus       208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~  286 (542)
                      .+.++..++.+..+|.. -.++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .+..+.+|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence            34678888888888752 2389999999999999988888999999999999999 5677764 4689999999999999


Q ss_pred             CCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          287 DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       287 ~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      .++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+.+..+               ..+..+++|
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L  161 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPH---------------GAFDRLSSL  161 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCT---------------TTTTTCTTC
T ss_pred             cCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCH---------------HHHhCCCCC
Confidence            99998765 588999999999999 67789987 7999999999999998763211               235677888


Q ss_pred             ceeeeEecc
Q 037847          366 NVLSWSFGS  374 (542)
Q Consensus       366 ~~l~~~~~~  374 (542)
                      +.+++..+.
T Consensus       162 ~~L~l~~N~  170 (229)
T 3e6j_A          162 THAYLFGNP  170 (229)
T ss_dssp             CEEECTTSC
T ss_pred             CEEEeeCCC
Confidence            888887554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=3.4e-13  Score=133.67  Aligned_cols=125  Identities=19%  Similarity=0.212  Sum_probs=61.1

Q ss_pred             EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhc-cCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCC
Q 037847          210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQ-SLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~  287 (542)
                      .++..++.+..+|.. -.+.++.|++++|.++.+++..+. .+++|++|++++| .+..++ ..|..+.+|++|++++|.
T Consensus        22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc
Confidence            444555555544431 123355555555555555444444 5555555555555 333333 335555555555555555


Q ss_pred             CCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       288 i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ++.+|. .+..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCC
Confidence            555433 2455555555555555 333333323555555555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=3e-13  Score=118.50  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=92.2

Q ss_pred             ccceEEEeecCCcC--CCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847          206 EGAKRISLTANGIG--SLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD  282 (542)
Q Consensus       206 ~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~  282 (542)
                      .+++.|++.++.+.  .+|. +..+++|+.|++++|.++.+  ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56777888888776  5654 36777888888888877666  3377778888888888833333666666678888888


Q ss_pred             ccCCCCCccc--HHhhcCCCCCEEeccCCcccCccch---hhcCCCCCCcEEeccCcccc
Q 037847          283 LSSTDITGLP--QELKALEKLRYLNLDYAFHLSIIPH---QLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       283 l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~~~~~~  337 (542)
                      +++|.++.+|  ..+..+++|++|++++| .+..+|.   ..+..+++|++|++++|...
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            8888777765  56777888888888887 4555554   34777788888888777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=1.7e-13  Score=120.95  Aligned_cols=136  Identities=18%  Similarity=0.168  Sum_probs=77.7

Q ss_pred             CCCCCCccEEEccCcccccccchhhccC-CCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHh-hcCCCC
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSL-STLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL-KALEKL  301 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L  301 (542)
                      +.++++|+.|++++|.++.++.  +..+ ++|++|++++| .+..+ ..++.+++|++|++++|.++.+|..+ +.+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4455566666666666655432  3333 36666666666 45544 35666666666666666666665444 666666


Q ss_pred             CEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847          302 RYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL  376 (542)
Q Consensus       302 ~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~  376 (542)
                      ++|++++| .+..+|. ..+..+++|++|++++|.+...            .......+..+++|+.++++.+...
T Consensus        91 ~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHH
Confidence            67766666 4455554 1255666667777666665421            1111223556666666666665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.42  E-value=1e-12  Score=130.30  Aligned_cols=147  Identities=26%  Similarity=0.299  Sum_probs=122.4

Q ss_pred             EEecCcccccCCcccccccceEEEeecCCcCCCCC--CC-CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IP-TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      +...+..+..+|... ...++.|++++|.+..++.  +. ++++|+.|++++|.+..+++..|..+++|++|+|++| .+
T Consensus        23 l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l  100 (361)
T 2xot_A           23 LSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HL  100 (361)
T ss_dssp             EECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cC
Confidence            344455666666532 3568999999999998753  55 8999999999999999998888999999999999999 56


Q ss_pred             CcCcc-ccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhc---CCCCCCcEEeccCccccc
Q 037847          266 STLPS-GISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLI---SCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       266 ~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~---~~l~~L~~L~l~~~~~~~  338 (542)
                      ..+|. .|..+.+|++|++++|.++.+ |..+..+++|++|++++| .+..+|...+   ..+++|++|++++|.+..
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            66654 588999999999999999986 667999999999999999 7788888755   679999999999998753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=4.4e-13  Score=114.82  Aligned_cols=123  Identities=23%  Similarity=0.244  Sum_probs=54.7

Q ss_pred             ccceEEEeecCCcC--CCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847          206 EGAKRISLTANGIG--SLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD  282 (542)
Q Consensus       206 ~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~  282 (542)
                      .+++.+++.++.+.  .+|. +..+++|+.|++++|.++..  ..++.+++|++|++++|.....+|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34455555555544  3332 24445555555555544443  2244444555555555422112444444444455555


Q ss_pred             ccCCCCCccc--HHhhcCCCCCEEeccCCcccCccch---hhcCCCCCCcEEec
Q 037847          283 LSSTDITGLP--QELKALEKLRYLNLDYAFHLSIIPH---QLISCFSKLEVLRL  331 (542)
Q Consensus       283 l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l  331 (542)
                      +++|.++.+|  ..++.+++|++|++++| .+..+|.   ..++.+++|++|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence            5554444432  34444445555555444 2333332   22444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.41  E-value=2e-12  Score=113.13  Aligned_cols=133  Identities=24%  Similarity=0.210  Sum_probs=109.9

Q ss_pred             CCCCccEEEccCcccc--cccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhhcCCCCC
Q 037847          226 TCPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLR  302 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~  302 (542)
                      ..++|+.|++++|.+.  .++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+.++++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            4578999999999987  56554 789999999999999 57766 689999999999999999998 888888899999


Q ss_pred             EEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecc
Q 037847          303 YLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       303 ~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                      +|++++| .+..+|. ..+..+++|++|++++|.+.+.            .......+..+++|+.|+++.+.
T Consensus        99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL------------NDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS------------TTHHHHHHTTCSSCCEETTEETT
T ss_pred             EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch------------HHHHHHHHHhCccCcEecCCCCC
Confidence            9999999 6777662 3389999999999999987532            11122457788899999888665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.38  E-value=4.3e-12  Score=112.09  Aligned_cols=128  Identities=25%  Similarity=0.393  Sum_probs=108.8

Q ss_pred             ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCC
Q 037847          208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSST  286 (542)
Q Consensus       208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~  286 (542)
                      .+.+++.++.+..+|. .-.++|+.|++++|.+..+++..+..+++|++|++++| .+..+|.. ++.+.+|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence            3567888888888773 23478999999999999888887899999999999999 56666654 689999999999999


Q ss_pred             CCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847          287 DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       287 ~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      .++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99998765 688999999999999 6778888767889999999999998753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.38  E-value=1.4e-12  Score=111.62  Aligned_cols=129  Identities=20%  Similarity=0.256  Sum_probs=104.7

Q ss_pred             CCCCccEEEccCcccc--cccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhhcCCCCC
Q 037847          226 TCPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLR  302 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~  302 (542)
                      ..++++.|++++|.+.  .++. .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            4578999999999987  5554 4789999999999999 66666 689999999999999999998 888888899999


Q ss_pred             EEeccCCcccCccc--hhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeE
Q 037847          303 YLNLDYAFHLSIIP--HQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS  371 (542)
Q Consensus       303 ~L~l~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~  371 (542)
                      +|++++| .+..+|  .. ++.+++|++|++++|.+.+.            .......+..+++|+.|+++
T Consensus        92 ~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNL------------NDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGS------------TTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccch------------HHHHHHHHHHCCCcccccCC
Confidence            9999999 566654  44 88999999999999987532            11112346677778777653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=9.7e-13  Score=116.13  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=116.2

Q ss_pred             CCcccccccceEEEeecCCcCCCCCCCCCC-CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcccc-CCCC
Q 037847          199 APKVEEWEGAKRISLTANGIGSLSEIPTCP-RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV  276 (542)
Q Consensus       199 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~  276 (542)
                      .+......+++.|++.+|.+..++.+..+. +|+.|++++|.++.+.  .+..+++|++|++++| .+..+|..+ +.++
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALP   88 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCC
Confidence            345566788999999999999988777766 9999999999998873  3889999999999999 677777655 8999


Q ss_pred             CCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchh---hcCCCCCCcEEeccCcccc
Q 037847          277 SLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQ---LISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       277 ~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l~~~~~~  337 (542)
                      +|++|++++|.++.+|.  .+..+++|++|++++| .+..+|..   ++..+++|+.|++++|...
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999999999987  8999999999999999 56677764   4788999999999988653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.37  E-value=4e-12  Score=113.84  Aligned_cols=128  Identities=21%  Similarity=0.287  Sum_probs=106.1

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccch-hhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDG-FFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~  287 (542)
                      +.++++++.+..+|... ..+++.|++++|.+..+++. .+..+++|++|++++|......|..++.+.+|++|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            67889999998887622 34899999999999888764 58899999999999994444447889999999999999999


Q ss_pred             CCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847          288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG  338 (542)
Q Consensus       288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  338 (542)
                      ++.++.. +..+++|++|++++| .+..++...+..+++|++|++++|.+..
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            9997654 889999999999999 5555543348999999999999998753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=7.9e-12  Score=111.90  Aligned_cols=125  Identities=23%  Similarity=0.341  Sum_probs=105.1

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~  287 (542)
                      +.+++.++.+..+|.. -.++++.|++++|.++.++. .+..+++|++|++++| .+..++ ..|..+.+|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence            4678888888888752 23689999999999988774 5899999999999999 555554 568999999999999999


Q ss_pred             CCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       288 i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ++.+|. .+..+++|++|++++| .+..+|...+..+++|++|++.+|++.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence            999765 5889999999999999 677888776889999999999988753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=3.8e-12  Score=137.43  Aligned_cols=115  Identities=25%  Similarity=0.277  Sum_probs=86.7

Q ss_pred             CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY  303 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  303 (542)
                      +..+++|+.|++++|.+..++.. +..+++|++|+|++| .+..+|..|+.+.+|++|+|++|.++.+|..+++|++|++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            56677788888888877776665 447788888888888 5667787788888888888888888888888888888888


Q ss_pred             EeccCCcccCccchhhcCCCCCCcEEeccCccccccccC
Q 037847          304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKG  342 (542)
Q Consensus       304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~  342 (542)
                      |+|++| .++.+|.. ++++++|++|++++|.+.+.+|.
T Consensus       298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHH
T ss_pred             EECCCC-CCCccChh-hhcCCCccEEeCCCCccCCCChH
Confidence            888887 56677776 77788888888888877665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=1.3e-11  Score=129.20  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=55.4

Q ss_pred             ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCC
Q 037847          230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYA  309 (542)
Q Consensus       230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~  309 (542)
                      |+.|++++|.++.+|.  ++.+++|++|++++| .+..+|..++.+++|++|++++|.++.+| .++.+++|++|++++|
T Consensus       443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             CSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             ceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            4555555555555443  555555555555555 44455555555555555555555555555 5555555555555555


Q ss_pred             cccCcc--chhhcCCCCCCcEEeccCcccc
Q 037847          310 FHLSII--PHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       310 ~~~~~l--p~~~~~~l~~L~~L~l~~~~~~  337 (542)
                       .+..+  |.. ++.+++|++|++++|.+.
T Consensus       519 -~l~~~~~p~~-l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          519 -RLQQSAAIQP-LVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             -CCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred             -CCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence             33333  433 555555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=1.5e-11  Score=128.76  Aligned_cols=121  Identities=20%  Similarity=0.244  Sum_probs=106.3

Q ss_pred             cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847          207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST  286 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~  286 (542)
                      .++.|++++|.+..+|.+..+++|+.|++++|.++.+|.. ++.+++|++|++++| .+..+| .++.+++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence            5789999999999999999999999999999999987765 899999999999999 677888 8999999999999999


Q ss_pred             CCCcc--cHHhhcCCCCCEEeccCCcccCccchh---hcCCCCCCcEEec
Q 037847          287 DITGL--PQELKALEKLRYLNLDYAFHLSIIPHQ---LISCFSKLEVLRL  331 (542)
Q Consensus       287 ~i~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l  331 (542)
                      .++.+  |..++.+++|++|++++| .+..+|..   ++..+++|+.|++
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            99998  899999999999999999 55555542   2334788888864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.22  E-value=4.6e-11  Score=106.89  Aligned_cols=124  Identities=23%  Similarity=0.303  Sum_probs=103.6

Q ss_pred             cEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCC
Q 037847          231 VTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYA  309 (542)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~  309 (542)
                      ++++++++.++.+|...   .++|++|++++| .+..+|..+..+.+|++|++++|.++.++. .+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            67899999998888653   368999999999 788999999999999999999999999764 5899999999999999


Q ss_pred             cccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecc
Q 037847          310 FHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       310 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                       .+..+|...+..+++|++|++++|.+....+               ..+..+++|+.+++..+.
T Consensus        89 -~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 -RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---------------GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             -CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---------------TTTTTCTTCCEEECCSSC
T ss_pred             -ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---------------hhhhcCccccEEEeCCCC
Confidence             6777776668999999999999998764222               125567788888887654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.21  E-value=2.3e-12  Score=139.07  Aligned_cols=139  Identities=22%  Similarity=0.191  Sum_probs=113.0

Q ss_pred             ccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          202 VEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      +..+..++.|++.+|.+..++ .+.++++|++|+|++|.++.+|.. |+.+++|++|+|++| .+..+|..|+.+.+|++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence            445678999999999999886 467899999999999999977755 899999999999999 67799999999999999


Q ss_pred             EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccCC
Q 037847          281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKGK  343 (542)
Q Consensus       281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~  343 (542)
                      |+|++|.++.+|..++++++|++|+|++|.....+|.. +..+. .+..|++.+|.+.+.+|..
T Consensus       298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCccc
Confidence            99999999999999999999999999999554455553 43322 1223566677766666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.18  E-value=1.2e-10  Score=104.24  Aligned_cols=124  Identities=26%  Similarity=0.308  Sum_probs=102.8

Q ss_pred             EEecCcccccCCcccccccceEEEeecCCcCCCCC---CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847          189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE---IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP  265 (542)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  265 (542)
                      +...+..+..+|... ..+++.|++.+|.+..++.   +..+++|++|++++|.++.+.+..|..+++|++|++++| .+
T Consensus        13 l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l   90 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KI   90 (192)
T ss_dssp             EECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CC
T ss_pred             EEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cC
Confidence            334455666666532 2489999999999998863   789999999999999999988777999999999999999 55


Q ss_pred             CcC-ccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCc
Q 037847          266 STL-PSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSI  314 (542)
Q Consensus       266 ~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~  314 (542)
                      ..+ |..++.+++|++|++++|.++.+ |..+..+++|++|++++|.....
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            555 44589999999999999999985 77899999999999999954433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=6.9e-13  Score=119.53  Aligned_cols=152  Identities=24%  Similarity=0.276  Sum_probs=111.9

Q ss_pred             ceEEEeecC--CcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEecc
Q 037847          208 AKRISLTAN--GIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS  284 (542)
Q Consensus       208 l~~l~l~~~--~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~  284 (542)
                      ++...+.+.  .++.+| .+..+++|++|++++|.++.++  .+..+++|++|++++| .+..+|..++.+++|++|+++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence            344444443  344444 4677889999999999888876  4888999999999999 677888888888899999999


Q ss_pred             CCCCCcccHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcccc
Q 037847          285 STDITGLPQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK  363 (542)
Q Consensus       285 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  363 (542)
                      +|.++.+| .++.+++|++|++++| .+..+|. ..+..+++|++|++++|.+.+.+|...     .........+..++
T Consensus       102 ~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-----~~~~~~~~~~~~l~  174 (198)
T 1ds9_A          102 YNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-----ATSEYRIEVVKRLP  174 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-----THHHHHHHHHHHCS
T ss_pred             CCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccccccccc-----chHHHHHHHHHhCC
Confidence            99999987 6889999999999998 5666654 337889999999999998765433210     00111222356677


Q ss_pred             CCceee
Q 037847          364 HLNVLS  369 (542)
Q Consensus       364 ~L~~l~  369 (542)
                      +|+.|+
T Consensus       175 ~L~~Ld  180 (198)
T 1ds9_A          175 NLKKLD  180 (198)
T ss_dssp             SCSEEC
T ss_pred             CcEEEC
Confidence            777766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.16  E-value=2.9e-10  Score=100.17  Aligned_cols=123  Identities=28%  Similarity=0.422  Sum_probs=101.7

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP  269 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp  269 (542)
                      .+..+..+|. ....+++.|++.++.+..++.  +..+++|++|++++|.++.+++..+..+++|++|++++| .+..+|
T Consensus        15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~   92 (177)
T 2o6r_A           15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLP   92 (177)
T ss_dssp             CSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             cCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccC
Confidence            4445555553 223789999999999998864  688999999999999999988887899999999999999 566666


Q ss_pred             cc-cCCCCCCCEEeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccc
Q 037847          270 SG-ISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIP  316 (542)
Q Consensus       270 ~~-i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp  316 (542)
                      .. ++.+.+|++|++++|.++.+|..+ ..+++|++|++++|......|
T Consensus        93 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            54 689999999999999999988764 789999999999995444333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.14  E-value=2e-10  Score=100.78  Aligned_cols=102  Identities=24%  Similarity=0.328  Sum_probs=69.9

Q ss_pred             cEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccC
Q 037847          231 VTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDY  308 (542)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~  308 (542)
                      +.++++++.+..+|...   .++|++|++++| .+..+ |..|+.+.+|++|++++|.++.+|.. +.++++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45666666666665542   266777777777 34444 55677777777777777777777665 36777777777777


Q ss_pred             CcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          309 AFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       309 ~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      | .+..+|...+..+++|++|++++|.+.
T Consensus        91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7 566666655777777888888777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.12  E-value=2.7e-10  Score=99.57  Aligned_cols=103  Identities=26%  Similarity=0.336  Sum_probs=69.7

Q ss_pred             ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEecc
Q 037847          230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLD  307 (542)
Q Consensus       230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~  307 (542)
                      .+.++++++.++.+|...   .++|++|++++| .+..+ |..|+.+.+|++|++++|.++.+|.. +..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            356666666666665542   266777777777 44444 55577777777777777777776655 3677777777777


Q ss_pred             CCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       308 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      +| .+..+|...+..+++|++|++++|.+.
T Consensus        87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            77 566666655777777888887777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.10  E-value=5.4e-10  Score=98.02  Aligned_cols=106  Identities=21%  Similarity=0.321  Sum_probs=91.6

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~  287 (542)
                      +.+++.++.+..+|.-. .++|+.|++++|.+..+++..|..+++|++|++++| .+..+|.. +..+.+|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence            57888999998887632 389999999999999998888999999999999999 67778765 5899999999999999


Q ss_pred             CCcccHH-hhcCCCCCEEeccCCcccCccch
Q 037847          288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPH  317 (542)
Q Consensus       288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~  317 (542)
                      ++.+|.. +..+++|++|++++| .+...+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~  122 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR  122 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred             cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence            9999876 889999999999999 4554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.08  E-value=4.2e-12  Score=114.37  Aligned_cols=128  Identities=20%  Similarity=0.223  Sum_probs=102.7

Q ss_pred             CccEEEccCc--ccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEec
Q 037847          229 RLVTLLLDGN--RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL  306 (542)
Q Consensus       229 ~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  306 (542)
                      .++...+.+.  .++.++. .+..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|..+..+++|++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence            3444555544  3444444 4889999999999999 677788 899999999999999999999999999999999999


Q ss_pred             cCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847          307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL  376 (542)
Q Consensus       307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~  376 (542)
                      ++| .+..+|.  ++.+++|++|++++|.+...              ..+..+..+++|+.++++.+...
T Consensus       101 ~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~--------------~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          101 SYN-QIASLSG--IEKLVNLRVLYMSNNKITNW--------------GEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEE-ECCCHHH--HHHHHHSSEEEESEEECCCH--------------HHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCC-cCCcCCc--cccCCCCCEEECCCCcCCch--------------hHHHHHhcCCCCCEEEecCCccc
Confidence            999 6777874  78899999999999986421              22356888999999999877643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.04  E-value=1e-09  Score=95.83  Aligned_cols=101  Identities=23%  Similarity=0.359  Sum_probs=88.5

Q ss_pred             ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCC
Q 037847          208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSST  286 (542)
Q Consensus       208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~  286 (542)
                      .+.++++++.+..+|.-. .++|++|++++|.++.+++..|..+++|++|++++| .+..+|.. +..+.+|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence            467899999999887532 489999999999999998888999999999999999 67777655 589999999999999


Q ss_pred             CCCcccHH-hhcCCCCCEEeccCCc
Q 037847          287 DITGLPQE-LKALEKLRYLNLDYAF  310 (542)
Q Consensus       287 ~i~~lp~~-i~~l~~L~~L~l~~~~  310 (542)
                      .++.+|.. +..+++|++|++++|.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            99998875 8899999999999994

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=2.5e-09  Score=104.36  Aligned_cols=286  Identities=13%  Similarity=0.063  Sum_probs=155.9

Q ss_pred             cccceEEEeecCCc-CCCCCCCC-CCCccEEEccCcccc--cccchhhccCCCccEEEecCCCCCCcCc-cccCC-----
Q 037847          205 WEGAKRISLTANGI-GSLSEIPT-CPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISG-----  274 (542)
Q Consensus       205 ~~~l~~l~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~-----  274 (542)
                      +.+++.|.+.++-- ..+..+.. +++|++|++++|.+.  .....   .++.++.+.+..+    .+| ..|..     
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhccccccc
Confidence            34566666665310 01111122 677888888887765  22221   2222444444444    222 23445     


Q ss_pred             ---CCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccC
Q 037847          275 ---LVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD  350 (542)
Q Consensus       275 ---l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  350 (542)
                         +.+|+.+++.. .++.++.. +..+++|+.+++.++ .+..++..++..+.++..+...........          
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~----------  164 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK----------  164 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS----------
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc----------
Confidence               78888888877 77776544 677888888888877 455666666766666666655431110000          


Q ss_pred             CCcchhHhhccccCCc-eeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCcc
Q 037847          351 GAEPLMKELLGLKHLN-VLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLE  428 (542)
Q Consensus       351 ~~~~~~~~l~~L~~L~-~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~  428 (542)
                       .......+..+..|+ .+.+......... +....-....+..+.+.+.-.   ......+ ..+++|++|++++|.+.
T Consensus       165 -~~i~~~~f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~l~---~~~~~~l~~~~~~L~~l~L~~n~i~  239 (329)
T 3sb4_A          165 -NRWEHFAFIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEGKLD---NADFKLIRDYMPNLVSLDISKTNAT  239 (329)
T ss_dssp             -TTTTTSCEEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEECCC---HHHHHHHHHHCTTCCEEECTTBCCC
T ss_pred             -ccccccccccccccceeEEecCCCcHHHH-HhhcccCccccceEEEeeeec---HHHHHHHHHhcCCCeEEECCCCCcc
Confidence             000000122233333 2222211111111 111111112223333322110   0011111 13789999999999888


Q ss_pred             ceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcc-eEEEeccchhhhcccccccccccccCCcCCCCCc
Q 037847          429 EMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLK-QLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPR  506 (542)
Q Consensus       429 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  506 (542)
                      .++...+.        .+.+|++|++.++-. -....+.++++|+ .+.+.+ .++.+..            .....+++
T Consensus       240 ~I~~~aF~--------~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------------~aF~~c~~  298 (329)
T 3sb4_A          240 TIPDFTFA--------QKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------------GAFMGCDN  298 (329)
T ss_dssp             EECTTTTT--------TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECT------------TTTTTCTT
T ss_pred             eecHhhhh--------CCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEch------------hhhhCCcc
Confidence            87665553        388999999988733 3334477899999 999988 6666643            36667889


Q ss_pred             cceeecccCCcccccCCC-CCCCCCcceEee
Q 037847          507 LEYLTMWRGTNLKSVYPN-PQPFPKLKKIQA  536 (542)
Q Consensus       507 L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i  536 (542)
                      |+.+.+.+ ..++.++.. ...+++|++++.
T Consensus       299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            99999866 467777653 445788888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=6.3e-09  Score=101.46  Aligned_cols=56  Identities=21%  Similarity=0.420  Sum_probs=31.3

Q ss_pred             CCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEecc
Q 037847          227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLS  284 (542)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~  284 (542)
                      +++|+.+.+.. .++.++...|.++.+|+.+++.++ .+..+ +..|..+.++.++...
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~  156 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLG  156 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTT
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCc
Confidence            66666666666 566666666666666666666666 33232 3334455555544443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.83  E-value=1.3e-07  Score=94.48  Aligned_cols=103  Identities=20%  Similarity=0.208  Sum_probs=81.1

Q ss_pred             CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCcccHHhhcCCCCC
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQELKALEKLR  302 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~  302 (542)
                      |.++ +|+.+.+..+ ++.+....|.++ +|+.+.+..+  +..++ ..|..+.+|+.+++.++.++.+|...-...+|+
T Consensus       132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~  206 (401)
T 4fdw_A          132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE  206 (401)
T ss_dssp             TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred             cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence            5554 6888888766 777777778774 6999998864  45443 567889999999999888998888766678999


Q ss_pred             EEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847          303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCG  333 (542)
Q Consensus       303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  333 (542)
                      .+.+..+  +..++..++.++++|+.+.+..
T Consensus       207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             EEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred             EEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence            9999754  7778877788889999998865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.78  E-value=1.6e-08  Score=99.47  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=65.3

Q ss_pred             EEeecC-CcCCCCCCCCCCCccEEEccC-cccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847          211 ISLTAN-GIGSLSEIPTCPRLVTLLLDG-NRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       211 l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~  287 (542)
                      ++..++ .+..+|.+..+++|+.|+|++ |.+..+++..|..+++|++|+|++| .+..+ |..|+.+.+|++|+|++|.
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence            455555 666666666667777777775 7777777666777777777777777 34443 3456777777777777777


Q ss_pred             CCcccHHhhcCCCCCEEeccCC
Q 037847          288 ITGLPQELKALEKLRYLNLDYA  309 (542)
Q Consensus       288 i~~lp~~i~~l~~L~~L~l~~~  309 (542)
                      ++.+|..+.....|++|++.+|
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSS
T ss_pred             cceeCHHHcccCCceEEEeeCC
Confidence            7777665544444777777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.76  E-value=2.1e-08  Score=98.49  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=86.9

Q ss_pred             cEEEccCc-ccccccchhhccCCCccEEEecC-CCCCCcCc-cccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEec
Q 037847          231 VTLLLDGN-RIEEITDGFFQSLSTLRVLSLRG-NFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNL  306 (542)
Q Consensus       231 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l  306 (542)
                      ..++.+++ .++.+|.  +..+.+|++|+|++ | .+..+| ..|+.+.+|++|+|++|.++.+|+ .+.+|++|++|+|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            35688887 8888877  88999999999997 7 677766 579999999999999999999765 6799999999999


Q ss_pred             cCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ++| .+..+|...+..++ |+.|++.+|.+.
T Consensus        88 ~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFN-ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            999 77888887566665 999999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.67  E-value=5.2e-07  Score=90.05  Aligned_cols=222  Identities=12%  Similarity=0.163  Sum_probs=142.1

Q ss_pred             cceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEecc
Q 037847          207 GAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS  284 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~  284 (542)
                      +++.+.+..+ +..+.  .|.++ +|+.+.+.. .+..+....|.++.+|+.+++.++ .+..+|.......+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence            5777776654 55553  35564 699999986 677888888999999999999988 678887766567899999997


Q ss_pred             CCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcccc
Q 037847          285 STDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK  363 (542)
Q Consensus       285 ~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  363 (542)
                      .+ ++.++. .+.++.+|+.+.+..+  +..++..++.+ .+|+.+.+.. .+. .+              ....+.+++
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~-~I--------------~~~aF~~c~  271 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVT-NI--------------ASRAFYYCP  271 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCC-EE--------------CTTTTTTCT
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-Ccc-EE--------------ChhHhhCCC
Confidence            54 777654 4678899999999875  67777776777 7899998843 221 11              112356667


Q ss_pred             CCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccc
Q 037847          364 HLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFR  443 (542)
Q Consensus       364 ~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  443 (542)
                      +|+.+.+..+...                       ...........+..+++|+.+++.. .+..+....+        
T Consensus       272 ~L~~l~l~~~~~~-----------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF--------  319 (401)
T 4fdw_A          272 ELAEVTTYGSTFN-----------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL--------  319 (401)
T ss_dssp             TCCEEEEESSCCC-----------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT--------
T ss_pred             CCCEEEeCCcccc-----------------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh--------
Confidence            7777766532210                       0000011123455677777777763 3444433333        


Q ss_pred             ccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhc
Q 037847          444 NGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEII  485 (542)
Q Consensus       444 ~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~  485 (542)
                      ..+.+|+.+.|..+-. -....+.++ +|+.+++.++.+..+.
T Consensus       320 ~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          320 GGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             TTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             cCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence            2367777777755432 222335556 7777777776655543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.54  E-value=9.9e-09  Score=101.49  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             ccceEEEeecCCcCCCC--C----C-CCCCCccEEEccCcccccccc-hhhccCCCccEEEecCCCCCCcC-cccc----
Q 037847          206 EGAKRISLTANGIGSLS--E----I-PTCPRLVTLLLDGNRIEEITD-GFFQSLSTLRVLSLRGNFPPSTL-PSGI----  272 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~--~----~-~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l-p~~i----  272 (542)
                      ..++.+++.++.+....  .    + ...++|+.|++++|.+..... .....+++|++|+|++| .+... ...+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            45666777766654321  0    1 123566666666665543221 11233456666666666 33221 1111    


Q ss_pred             -CCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCc-----cchhhcCCCCCCcEEeccCccc
Q 037847          273 -SGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSI-----IPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       273 -~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                       ....+|++|++++|.++.     ++..+..+++|++|++++|. +..     ++.. +...++|++|++++|.+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCC
Confidence             234556666666666543     34444556666666666663 221     1222 34455666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.51  E-value=1.9e-08  Score=99.51  Aligned_cols=129  Identities=22%  Similarity=0.259  Sum_probs=90.8

Q ss_pred             ccceEEEeecCCcCCC--CCC-CCCCCccEEEccCcccccccchhh-----ccCCCccEEEecCCCCCCc-----Ccccc
Q 037847          206 EGAKRISLTANGIGSL--SEI-PTCPRLVTLLLDGNRIEEITDGFF-----QSLSTLRVLSLRGNFPPST-----LPSGI  272 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~-----lp~~i  272 (542)
                      .+++.|++++|.+...  ..+ ..+++|+.|++++|.+.......+     ...++|++|++++| .+..     ++..+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence            5788899998877542  122 235678899999998765443333     34678999999998 4432     44555


Q ss_pred             CCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCc-----cchhhcCCCCCCcEEeccCcccc
Q 037847          273 SGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSI-----IPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       273 ~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ..+++|++|++++|.++.     ++..+...++|++|++++| .++.     ++.. +...++|++|++++|.+.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARA-AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHH-HHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHH-HHhCCCCCEEeccCCCCC
Confidence            678889999999988775     4566777888999999998 4442     2222 445688999999988764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=3.6e-07  Score=89.52  Aligned_cols=151  Identities=18%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhc--cccCCcee
Q 037847          291 LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL--GLKHLNVL  368 (542)
Q Consensus       291 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~l  368 (542)
                      ++..+..+++|+.|++++|... .++.  +. +++|++|.+..|.+.               ...+..+.  .+++|+.|
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~---------------~~~l~~l~~~~lp~L~~L  224 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLP---------------DSVVEDILGSDLPNLEKL  224 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCC---------------HHHHHHHHHSBCTTCCEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCC---------------hHHHHHHHHccCCCCcEE
Confidence            4555666777777777766222 3333  32 667777777766542               12333333  56677777


Q ss_pred             eeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccc
Q 037847          369 SWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN  448 (542)
Q Consensus       369 ~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  448 (542)
                      +++.+....... .....+                  ........+++|++|++.+|.+........     .....+++
T Consensus       225 ~L~~~~~~~~~~-~~~~~l------------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-----a~a~~~~~  280 (362)
T 2ra8_A          225 VLYVGVEDYGFD-GDMNVF------------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-----LESDILPQ  280 (362)
T ss_dssp             EEECBCGGGTCC-SCGGGT------------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHH-----HHCSSGGG
T ss_pred             EEeccccccccc-hhHHHH------------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHH-----HhCccCCC
Confidence            665322110000 000000                  000111246788888888887754111101     11134788


Q ss_pred             cCEEEEccCCCCC------cchhhhccCcceEEEeccchhhh
Q 037847          449 LNTVVLRSCRGKD------LTWLVFVQNLKQLNMQGFTMEEI  484 (542)
Q Consensus       449 L~~L~L~~c~~~~------~~~l~~l~~L~~L~L~~~~l~~~  484 (542)
                      |+.|+|+.|.+..      ...+..+++|+.|+|++|.+.+.
T Consensus       281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            8888888887721      22345678888898888776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.22  E-value=1.6e-06  Score=84.94  Aligned_cols=58  Identities=17%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             hhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhh--cCCCCCEEecc
Q 037847          247 FFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELK--ALEKLRYLNLD  307 (542)
Q Consensus       247 ~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~--~l~~L~~L~l~  307 (542)
                      .+..+++|+.|+++++. ...+|. +. +++|++|++..|.+.. ....+.  .+++|++|+|+
T Consensus       167 ll~~~P~L~~L~L~g~~-~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTN-NLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHTCTTCCEEEEECCB-TCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHhcCCCCcEEEEeCCC-Cceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            35566777777777662 123333 32 5667777776665543 112222  56677777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=6.5e-07  Score=77.13  Aligned_cols=98  Identities=14%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             cccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC---CCcchhhhc----cCcceEEEec-cchhhhcc
Q 037847          415 ENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFV----QNLKQLNMQG-FTMEEIIS  486 (542)
Q Consensus       415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l----~~L~~L~L~~-~~l~~~~~  486 (542)
                      .+|++|++++|.++...+..+        ..+++|++|+|++|..   ..+..+..+    ++|++|+|++ ..+++...
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L--------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM--------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG--------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             ceEeEEeCcCCCccHHHHHHh--------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            479999999998665332222        4589999999999975   444455553    5799999999 56877643


Q ss_pred             cccccccccccCCcCCCCCccceeecccCCcccccCC----CCCCCCCcc
Q 037847          487 VEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP----NPQPFPKLK  532 (542)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~p~L~  532 (542)
                      .            ....+++|++|++.+|+.+++...    -..++|+++
T Consensus       133 ~------------~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          133 I------------ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             H------------HGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             H------------HHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            1            344689999999999998876321    123467765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.02  E-value=2.3e-06  Score=73.64  Aligned_cols=83  Identities=7%  Similarity=-0.026  Sum_probs=49.2

Q ss_pred             ccCEEEEccCCC--CCcchhhhccCcceEEEec-cchhhhcccccccccccccCCcCCC----CCccceeecccCCcccc
Q 037847          448 NLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNF----FPRLEYLTMWRGTNLKS  520 (542)
Q Consensus       448 ~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~  520 (542)
                      +|+.|++++|.+  ..+..+..+++|++|+|++ ..+++....            .+..    .++|++|+|++|+++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~------------~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE------------RLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH------------HHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH------------HHHhcccccCCCCEEEcCCCCcCCH
Confidence            567777777766  5555566777777777777 345554321            1111    34677777777776655


Q ss_pred             cCC-CCCCCCCcceEeeccCCCC
Q 037847          521 VYP-NPQPFPKLKKIQAFHCRQL  542 (542)
Q Consensus       521 ~~~-~~~~~p~L~~L~i~~C~~L  542 (542)
                      -.. ....+|+|++|++++|+++
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCC
Confidence            221 1234677777777777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.98  E-value=0.00016  Score=71.98  Aligned_cols=37  Identities=24%  Similarity=0.387  Sum_probs=22.8

Q ss_pred             hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847          295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG  333 (542)
Q Consensus       295 i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  333 (542)
                      +.++.+|+.+.+.++  ...++...+..+.+|+.+.+..
T Consensus       158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence            456667777777554  3455555566666777666643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.87  E-value=3.6e-06  Score=78.16  Aligned_cols=80  Identities=26%  Similarity=0.268  Sum_probs=45.0

Q ss_pred             ccCCCccEEEecCCCCCCcC---ccccCCCCCCCEEeccCCCCCcccHHhhcCC--CCCEEeccCCcccCccch------
Q 037847          249 QSLSTLRVLSLRGNFPPSTL---PSGISGLVSLHHLDLSSTDITGLPQELKALE--KLRYLNLDYAFHLSIIPH------  317 (542)
Q Consensus       249 ~~l~~L~~L~l~~~~~~~~l---p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~------  317 (542)
                      ..+++|+.|+|++| .+..+   |..++.+++|++|+|++|.++.+ ..+..+.  +|++|++++|.....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            45667777777777 34333   34445666777777777666665 2344444  666666666643333331      


Q ss_pred             hhcCCCCCCcEEe
Q 037847          318 QLISCFSKLEVLR  330 (542)
Q Consensus       318 ~~~~~l~~L~~L~  330 (542)
                      .++..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2244556666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.83  E-value=1.1e-05  Score=70.95  Aligned_cols=81  Identities=21%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             CCCCCccEEEccCc-cccccc----chhhccCCCccEEEecCCCCCCc-----CccccCCCCCCCEEeccCCCCCc----
Q 037847          225 PTCPRLVTLLLDGN-RIEEIT----DGFFQSLSTLRVLSLRGNFPPST-----LPSGISGLVSLHHLDLSSTDITG----  290 (542)
Q Consensus       225 ~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~i~~----  290 (542)
                      ...+.|++|++++| .+....    ...+...++|++|+|++| .+..     +...+....+|++|+|++|.|..    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            34556666666666 553211    122344556666666666 2321     22233334556666666665554    


Q ss_pred             -ccHHhhcCCCCCEEec
Q 037847          291 -LPQELKALEKLRYLNL  306 (542)
Q Consensus       291 -lp~~i~~l~~L~~L~l  306 (542)
                       +...+...++|++|++
T Consensus       112 ~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          112 ALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEe
Confidence             3444455555666666

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.81  E-value=0.00011  Score=73.15  Aligned_cols=84  Identities=17%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             cccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhh
Q 037847          242 EITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQL  319 (542)
Q Consensus       242 ~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~  319 (542)
                      .+....|..+.+|+.+.+.++  ...++ ..|..+.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+  ...+... 
T Consensus       152 ~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~-  225 (394)
T 4fs7_A          152 VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDF-  225 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTT-
T ss_pred             ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehh-
Confidence            344455777777777777654  23332 34566777777777554 44433 23455666666665543  2222222 


Q ss_pred             cCCCCCCcEEec
Q 037847          320 ISCFSKLEVLRL  331 (542)
Q Consensus       320 ~~~l~~L~~L~l  331 (542)
                      .....+|+.+.+
T Consensus       226 ~~~~~~l~~i~i  237 (394)
T 4fs7_A          226 ALSKTGVKNIII  237 (394)
T ss_dssp             TTTTCCCCEEEE
T ss_pred             hcccCCCceEEE
Confidence            223345555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.78  E-value=2.7e-05  Score=68.51  Aligned_cols=119  Identities=15%  Similarity=0.112  Sum_probs=86.4

Q ss_pred             chhhccCCCccEEEecCC-CCCC----cCccccCCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCc
Q 037847          245 DGFFQSLSTLRVLSLRGN-FPPS----TLPSGISGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSI  314 (542)
Q Consensus       245 ~~~~~~l~~L~~L~l~~~-~~~~----~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~  314 (542)
                      ...+...+.|++|+|++| ....    .+...+....+|++|+|++|.+..     +...+...++|++|++++|. +..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence            344778899999999998 4322    244566778999999999999875     55667778899999999994 442


Q ss_pred             -----cchhhcCCCCCCcEEec--cCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847          315 -----IPHQLISCFSKLEVLRL--CGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL  376 (542)
Q Consensus       315 -----lp~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~  376 (542)
                           +... +...++|++|++  ++|.+...           ........+...++|+.|+++.+...
T Consensus       108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~-----------g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNN-----------VEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH-----------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHH-HHhCCCceEEEecCCCCCCCHH-----------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                 3343 667789999999  77876421           11123445566788999999887654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.64  E-value=5.4e-05  Score=70.23  Aligned_cols=87  Identities=21%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CCCCCCCEEeccCCCCCcc---cHHhhcCCCCCEEeccCCcccCccchhhcCCCC--CCcEEeccCccccccccCCCCcc
Q 037847          273 SGLVSLHHLDLSSTDITGL---PQELKALEKLRYLNLDYAFHLSIIPHQLISCFS--KLEVLRLCGCGRFGVIKGKEGNV  347 (542)
Q Consensus       273 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~  347 (542)
                      .++++|+.|+|++|.++.+   |..+..+++|++|+|++| .+..+..  +..+.  +|++|++.+|++.+.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~-----  238 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSLCDTFRD-----  238 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSS-----
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcCccccCc-----
Confidence            4678999999999988875   467789999999999999 5665533  44444  999999999998754331     


Q ss_pred             ccCCCcchhHhhccccCCceeee
Q 037847          348 LCDGAEPLMKELLGLKHLNVLSW  370 (542)
Q Consensus       348 ~~~~~~~~~~~l~~L~~L~~l~~  370 (542)
                         .......-+..+++|+.|+-
T Consensus       239 ---~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          239 ---QSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             ---HHHHHHHHHHHCTTCCEESS
T ss_pred             ---chhHHHHHHHHCcccCeECC
Confidence               01112233556666666553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.35  E-value=0.0086  Score=58.91  Aligned_cols=121  Identities=12%  Similarity=0.197  Sum_probs=62.8

Q ss_pred             cccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847          205 WEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD  282 (542)
Q Consensus       205 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~  282 (542)
                      ..+++.+.+.. .++.++  .|.+|.+|+.+.+..+ ++.+....|.++ +|+.+.+..+  +..++.......+|+.+.
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~  119 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFE  119 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCccccc
Confidence            34566666543 344443  3677777777777543 556666666665 4555555443  444443332334677777


Q ss_pred             ccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847          283 LSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG  333 (542)
Q Consensus       283 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  333 (542)
                      +..+ +..+......-.+|....+..+  +..+....+....+++...+..
T Consensus       120 lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          120 FPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             CCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred             CCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence            6543 3333333222335555555443  3334433355566666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.30  E-value=0.0063  Score=60.29  Aligned_cols=117  Identities=11%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             ceEEEeecCCcCCCC--CCCCCCCccEEEccCc---ccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEE
Q 037847          208 AKRISLTANGIGSLS--EIPTCPRLVTLLLDGN---RIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHL  281 (542)
Q Consensus       208 l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L  281 (542)
                      ++.+.+.. .++.+.  .|.+|.+|+.+.+..+   .++.+....|..+.+|+.+.+..+  +..++ ..+..+.+|+.+
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccc
Confidence            56666653 244443  4677888888877665   355666666777777776665544  33332 235566677777


Q ss_pred             eccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEec
Q 037847          282 DLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL  331 (542)
Q Consensus       282 ~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l  331 (542)
                      .+..+ +..++ ..+..+.+|+.+.+..+  +..+...++.+ .+|+.+.+
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~i  189 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHI  189 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred             cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEE
Confidence            76542 33332 23455666666666543  34444433332 34555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.30  E-value=0.0024  Score=63.35  Aligned_cols=106  Identities=12%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             CCCCC-CccEEEccCcccccccchhhccCCCccEEEecCCC--CCCcCc-cccCCCCCCCEEeccCCCCCcccH-HhhcC
Q 037847          224 IPTCP-RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF--PPSTLP-SGISGLVSLHHLDLSSTDITGLPQ-ELKAL  298 (542)
Q Consensus       224 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l  298 (542)
                      |.+++ .|+.+.+..+ ++.+....|.++.+|+.+.+..+.  .+..+. ..|..+..|+.+.+..+ ++.++. .+..+
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c  136 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC  136 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence            56664 4888888654 677777888899999999887652  244443 34667777877766543 555543 35678


Q ss_pred             CCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847          299 EKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG  333 (542)
Q Consensus       299 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  333 (542)
                      .+|+.+.+...  ...++...+..+.+|+.+.+..
T Consensus       137 ~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          137 EELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred             cccccccccce--eeeecccceecccccccccccc
Confidence            88998888654  5566666677788888887754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.38  E-value=0.035  Score=53.58  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=87.0

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHH-HHHHHHhcccCC
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWK-RAINKMRTSASK   82 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~-~~~~~l~~~~~~   82 (542)
                      ..+++.+|+.+|+.+++...+.......+   .+...+|++.++|.|+++..++..+....+...|- ...+......  
T Consensus       196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  270 (350)
T 2qen_A          196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI--  270 (350)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--
T ss_pred             ceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH--
Confidence            36899999999999999875422211111   46788999999999999999987654312222221 1111110000  


Q ss_pred             CCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHc-CCccccchhchHHHHHHHhccccccCC
Q 037847           83 FSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISE-GFVYDFDDGCDFIDDLLQACLLEEEGD  161 (542)
Q Consensus        83 ~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~-g~i~~~~~~~~~~~~L~~~~l~~~~~~  161 (542)
                          ..++   -.+.++  ++ ..+..+..+|.   + .++...+.....+. |-+.. .....+++.|.+.+++.... 
T Consensus       271 ----~~~l---~~l~~~--~~-~~~~~l~~la~---g-~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~~-  334 (350)
T 2qen_A          271 ----MGEL---EELRRR--SP-RYVDILRAIAL---G-YNRWSLIRDYLAVKGTKIPE-PRLYALLENLKKMNWIVEED-  334 (350)
T ss_dssp             ----HHHH---HHHHHH--CH-HHHHHHHHHHT---T-CCSHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTSEEEET-
T ss_pred             ----HHHH---HHHHhC--Ch-hHHHHHHHHHh---C-CCCHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCCCEEecC-
Confidence                0011   112222  55 68888888887   3 24455555544322 11121 34567899999999998643 


Q ss_pred             CeEEe-ehHHHHH
Q 037847          162 DHVKM-HDMIREM  173 (542)
Q Consensus       162 ~~~~m-hdl~~~~  173 (542)
                      ..|.+ |.++++.
T Consensus       335 ~~y~~~~p~~~~~  347 (350)
T 2qen_A          335 NTYKIADPVVATV  347 (350)
T ss_dssp             TEEEESSHHHHHH
T ss_pred             CEEEEecHHHHHH
Confidence            45655 5566554

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.28  E-value=0.049  Score=52.66  Aligned_cols=148  Identities=12%  Similarity=0.161  Sum_probs=88.0

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF   83 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~   83 (542)
                      ..+++.+|+.+|+.+++...+.... ...+..    .+|+++|+|.|+++..++..+....+...|-.  +..+..    
T Consensus       202 ~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~----  270 (357)
T 2fna_A          202 STVELKPFSREEAIEFLRRGFQEAD-IDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN--QTLEYA----  270 (357)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHT-CCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH--HHHHHH----
T ss_pred             ceeecCCCCHHHHHHHHHHHHHHcC-CCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHH--HHHHHH----
Confidence            4789999999999999988653222 112222    89999999999999999988754233333321  111100    


Q ss_pred             CCChHHHHHHHH-hhcC--CCCchhhhHHHhhhccCCCCcccChHHHHHHHH-HcCC-ccccchhchHHHHHHHhccccc
Q 037847           84 SGMKEEVFSRLK-FSYD--SLSTDELRSCLLYCYLYPEDYEIPKRELIDYWI-SEGF-VYDFDDGCDFIDDLLQACLLEE  158 (542)
Q Consensus        84 ~~~~~~~~~~l~-~sy~--~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~-a~g~-i~~~~~~~~~~~~L~~~~l~~~  158 (542)
                         ...+...+. +.++  .+++ ..+..+..+|.   +.  +...+..... ..|. +.. .....+++.|.+.+++..
T Consensus       271 ---~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~~~-~~~~~~L~~L~~~gli~~  340 (357)
T 2fna_A          271 ---KKLILKEFENFLHGREIARK-RYLNIMRTLSK---CG--KWSDVKRALELEEGIEISD-SEIYNYLTQLTKHSWIIK  340 (357)
T ss_dssp             ---HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---CB--CHHHHHHHHHHHHCSCCCH-HHHHHHHHHHHHTTSEEE
T ss_pred             ---HHHHHHHHHHHhhccccccH-HHHHHHHHHHc---CC--CHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCEEe
Confidence               001111111 2221  5777 78889988887   32  4444443221 1231 221 345678999999999986


Q ss_pred             cCCCeEE-eehHHHHH
Q 037847          159 EGDDHVK-MHDMIREM  173 (542)
Q Consensus       159 ~~~~~~~-mhdl~~~~  173 (542)
                      .. ..|. .|.++++.
T Consensus       341 ~~-~~y~f~~~~~~~~  355 (357)
T 2fna_A          341 EG-EKYCPSEPLISLA  355 (357)
T ss_dssp             SS-SCEEESSHHHHHH
T ss_pred             cC-CEEEecCHHHHHh
Confidence            44 4555 45676654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.55  E-value=0.033  Score=54.67  Aligned_cols=104  Identities=13%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccH-HhhcCCCC
Q 037847          224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQ-ELKALEKL  301 (542)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L  301 (542)
                      +..+.+++.+.+..+ +..+....+..+..|+.+.+..+  +..+ ...+..+.+|+.+.+.. .++.++. .+..+.+|
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence            344555555555433 33344444555566666665543  2222 22344455555555533 2333332 23455556


Q ss_pred             CEEeccCCcccCccchhhcCCCCCCcEEecc
Q 037847          302 RYLNLDYAFHLSIIPHQLISCFSKLEVLRLC  332 (542)
Q Consensus       302 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~  332 (542)
                      +.+.+.++ .+..++..++.++.+|+.+.+.
T Consensus       289 ~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          289 TKVVMDNS-AIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CEEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence            66655544 3444554445555566655553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.41  E-value=0.019  Score=46.72  Aligned_cols=53  Identities=21%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             EEeccCCCCC--cccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847          280 HLDLSSTDIT--GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       280 ~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                      .++.++.+++  .+|..+  -.+|++|+|++| .+..+|.+++..+++|+.|++.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            3444444444  454332  224555666555 4555555555555666666665554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.42  E-value=0.2  Score=49.53  Aligned_cols=139  Identities=12%  Similarity=0.008  Sum_probs=81.0

Q ss_pred             eecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhC------CChhHHHHHHHHHh------cC--CChhHHHH
Q 037847            6 LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECG------GLPLALKIVGRAMK------SQ--RKVGDWKR   71 (542)
Q Consensus         6 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~------GlPlai~~ig~~L~------~~--~~~~~W~~   71 (542)
                      +++++++.++++++|.+.+.... ....--.+....|+++|+      |.|..+..+.....      +.  -+.+.+..
T Consensus       210 i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~  288 (412)
T 1w5s_A          210 LHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK  288 (412)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence            89999999999999987653111 001112467889999999      99976665544321      11  12333333


Q ss_pred             HHHHHhcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCC--CCcccChHHHHHHHH--H---cCCcccc-chh
Q 037847           72 AINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYP--EDYEIPKRELIDYWI--S---EGFVYDF-DDG  143 (542)
Q Consensus        72 ~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp--~~~~~~~~~Li~~w~--a---~g~i~~~-~~~  143 (542)
                      +.....           . ...+.-++..||+ +.+.++..++.+.  .+..+...++...+.  +   .|.-... ...
T Consensus       289 ~~~~~~-----------~-~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
T 1w5s_A          289 AVSENE-----------A-ASIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQY  355 (412)
T ss_dssp             HHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHH
T ss_pred             HHHHHh-----------c-cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHH
Confidence            222110           0 2334557788998 7888888888654  233455555544432  2   2321111 234


Q ss_pred             chHHHHHHHhccccc
Q 037847          144 CDFIDDLLQACLLEE  158 (542)
Q Consensus       144 ~~~~~~L~~~~l~~~  158 (542)
                      ..+++.|...+++..
T Consensus       356 ~~~l~~L~~~gli~~  370 (412)
T 1w5s_A          356 HIYLKHLTSLGLVDA  370 (412)
T ss_dssp             HHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHhCCCEEe
Confidence            578999999999976

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.62  E-value=0.12  Score=41.88  Aligned_cols=52  Identities=25%  Similarity=0.394  Sum_probs=28.4

Q ss_pred             EEEeecCCcC--CCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCC
Q 037847          210 RISLTANGIG--SLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN  262 (542)
Q Consensus       210 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  262 (542)
                      .++.+++.++  .+|.- -.++|+.|+|++|.++.++...|..+++|++|+|.+|
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3444555554  44421 1134666666666666666655666666666666665

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=93.22  E-value=0.29  Score=46.56  Aligned_cols=55  Identities=11%  Similarity=-0.048  Sum_probs=42.5

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK   61 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~   61 (542)
                      .++++.+++.+|..+++.+.+.......+   .+....+++++.|.|-.+..+...+.
T Consensus       161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~  215 (324)
T 1hqc_A          161 IVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVR  215 (324)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            47899999999999999988754332222   46788999999999998887766653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.44  E-value=0.2  Score=43.59  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             hccCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccC----
Q 037847          248 FQSLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLS----  313 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~----  313 (542)
                      +..-+.|+.|+|+++..+.     .+-+.+..-.+|+.|+|++|.|..     +.+.+..=+.|++|+|++|....    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            3344566666666532222     123334455667777777776653     44555556678888887773221    


Q ss_pred             ccchhhcCCCCCCcEEeccCccc--cccccCCCCccccCCCcchhHhhccccCCceeeeEecch
Q 037847          314 IIPHQLISCFSKLEVLRLCGCGR--FGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS  375 (542)
Q Consensus       314 ~lp~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~  375 (542)
                      .+-.. +..-+.|++|++++|..  .+.          .........+..-+.|..+++.++..
T Consensus       117 ala~a-L~~N~tL~~L~L~n~~~~~ig~----------~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRS-TLVTQSIVEFKADNQRQSVLGN----------QVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHH-TTTTCCCSEEECCCCSSCCCCH----------HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHH-HhhCCceeEEECCCCcCcCcCH----------HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            12222 34445688888865421  110          00012333455556777777776553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.16  E-value=0.23  Score=43.31  Aligned_cols=108  Identities=16%  Similarity=0.027  Sum_probs=61.7

Q ss_pred             CCCCccEEEccCc-ccccc----cchhhccCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----
Q 037847          226 TCPRLVTLLLDGN-RIEEI----TDGFFQSLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG-----  290 (542)
Q Consensus       226 ~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-----  290 (542)
                      +-+.|+.|+++++ .+...    ....+..-..|+.|+|++|. +.     .+...+..-..|++|+|+.|.|..     
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            3455667777664 44321    12224556677888887773 32     222333345678888888887764     


Q ss_pred             ccHHhhcCCCCCEEeccCCcc--cC-----ccchhhcCCCCCCcEEeccCcc
Q 037847          291 LPQELKALEKLRYLNLDYAFH--LS-----IIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       291 lp~~i~~l~~L~~L~l~~~~~--~~-----~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                      +-+.+..=+.|++|+++++..  +.     .+... +..-+.|+.|++..+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCC
Confidence            344455556788888876522  12     12222 4445678888886554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=82.69  E-value=2.4  Score=37.61  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=43.0

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK   61 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~   61 (542)
                      ..+++++++.++.++++.+.+.......+   .+..+.|+++|+|.|..+..+...+.
T Consensus       178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~~  232 (250)
T 1njg_A          178 LQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAI  232 (250)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            46899999999999999998754321122   46678999999999999988776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	542
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 2   DAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK 61
             E +EV SL  D+ ++  +       +       ++         G P  L +  ++ +
Sbjct: 176 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEK--EEDVLNKTIELSSGNPATLMMFFKSCE 233

Query: 62  SQRKVGDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCL 110
             +      +  NK+ +           V     +SY SL+   L+ C+
Sbjct: 234 P-KTFEKMAQLNNKLESR------GLVGVECITPYSYKSLAM-ALQRCV 274

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 3e-09
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286
              L  L L  N I +I+     SL+ L+ L    N    +  S ++ L +++ L     
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN--KVSDVSSLANLTNINWLSAGHN 361

Query: 287 DITGLPQELKALEKLRYLNLDY 308
            I+ L   L  L ++  L L+ 
Sbjct: 362 QISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 163 HVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS 222
            +   ++       I+   + +   +L      +++   V      +R+    N +  +S
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS 345

Query: 223 EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
            +     +  L    N+I ++T     +L+ +  L L   
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 49/312 (15%), Positives = 101/312 (32%), Gaps = 20/312 (6%)

Query: 242 EITDGFFQS-LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEK 300
            +TD   Q+ L  +  L             G+  L +L  ++ S+  +T +   LK L K
Sbjct: 33  NVTDTVSQTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTK 89

Query: 301 LRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL 360
           L  + ++      I P   ++  + L +          +      N L   +  +     
Sbjct: 90  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 149

Query: 361 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 420
                ++   SFG+ +   K L        T                +  L  +E+L   
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPLANLT----TLERLDISSNKVSDISVLAKLTNLESLIAT 205

Query: 421 ELESCNLEEMKIDSTEEVKKLFRNGFR---------NLNTVVLRSCRGKDLTWLVFVQNL 471
             +  ++  + I +  +   L  N  +         NL  + L + +  +L  L  +  L
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 265

Query: 472 KQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN---PQPF 528
            +L +    +  I  +  L+ ++ +  +E+          +   T L   + N     P 
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV 325

Query: 529 PKLKKIQAFHCR 540
             L K+Q     
Sbjct: 326 SSLTKLQRLFFA 337

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 65/252 (25%)

Query: 227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286
              L +L+   N+I +IT     +   L  LSL GN         ++ L +L  LDL++ 
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 287 DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGN 346
            I+ L   L  L KL  L L      +I P   ++  + LE+                  
Sbjct: 252 QISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-------- 302

Query: 347 VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPF 406
                    +  L  L +L +   +                                   
Sbjct: 303 ---------ISNLKNLTYLTLYFNNISD-------------------------------- 321

Query: 407 NVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLV 466
            +  ++ +  LQ L   +  + ++       +  L      N+N +     +  DLT L 
Sbjct: 322 -ISPVSSLTKLQRLFFANNKVSDV-----SSLANL-----TNINWLSAGHNQISDLTPLA 370

Query: 467 FVQNLKQLNMQG 478
            +  + QL +  
Sbjct: 371 NLTRITQLGLND 382

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
           + + L    +  L  +     +  L L  NR+  +            +   + +      
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL---QASDNALEN 57

Query: 269 PSGISGLVSLHHLDLSSTDITGLP--QELKALEKLRYLNLDYAF--HLSIIPHQLISCFS 324
             G++ L  L  L L +  +      Q L +  +L  LNL          I  +L     
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 325 KLEVL 329
            +  +
Sbjct: 118 SVSSI 122

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 48/326 (14%), Positives = 97/326 (29%), Gaps = 42/326 (12%)

Query: 225 PTCPR-----LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH 279
           P CP      L  +      +E++            +L L+ N            L +LH
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 280 HLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338
            L L +  I+ + P     L KL  L L     L  +P ++     +L V          
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMPKTLQELRVHENEITKVRK 117

Query: 339 VIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVEC 398
            +               M  +    +    S     +    K L Y ++           
Sbjct: 118 SVFNG---------LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI----------- 157

Query: 399 GTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCR 458
                     +      +L EL L+   + ++   S + +  L + G    +   + +  
Sbjct: 158 ---ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 459 GKDLTWL-VFVQNLKQLNMQGFTMEEIISVEKLS----DISEVIGSEHNFFPRLEYLTMW 513
             +   L     N  +L      + +   ++ +     +IS +  ++            +
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274

Query: 514 RGTNLKSVYPNPQPFPKLKKIQAFHC 539
            G +L S   NP  + +++    F C
Sbjct: 275 SGVSLFS---NPVQYWEIQP-STFRC 296

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 240 IEEITDGFFQSLSTLRVLSLRGNFPP-STLPSGISGLVSLHHLDLSSTDITGLPQELKAL 298
           I    +      +    + L G  PP   + + +S L +  HL LS+ +I  +   L  +
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGM 69

Query: 299 EKLRYLNLDYAFH 311
           E LR L+L     
Sbjct: 70  ENLRILSLGRNLI 82

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 11/154 (7%)

Query: 213 LTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI 272
           LTA  I   ++     R   L L G +I  I +    +L     +    N        G 
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGF 59

Query: 273 SGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLC 332
             L  L  L +++  I  + +                    I+ +  +     L+ L   
Sbjct: 60  PLLRRLKTLLVNNNRICRIGE--------GLDQALPDLTELILTNNSLVELGDLDPLASL 111

Query: 333 GCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLN 366
               +  I              ++ ++  ++ L+
Sbjct: 112 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 259 LRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQ 318
           LR N    TLP G++ L  LH L++S  ++ G   +   L++           L   P  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP-- 308

Query: 319 LISC 322
           L +C
Sbjct: 309 LPAC 312

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 238 NRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA 297
           N              +L  L++  N     LP+       L  L  S   +  +P+  + 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPP---RLERLIASFNHLAEVPELPQ- 324

Query: 298 LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
              L+ L+++Y   L   P         +E LR+
Sbjct: 325 --NLKQLHVEYN-PLREFP----DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 221 LSEIPTC-PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH 279
           L E+P   PRL  L+   N + E+ +        L+ L +  N P    P       S+ 
Sbjct: 296 LIELPALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPE---SVE 347

Query: 280 HLDLSS 285
            L ++S
Sbjct: 348 DLRMNS 353

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)

Query: 227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS 270
               V L +   RI  +     ++L  LR  S         LP+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 272 ISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIP 316
             G      LD+S T I  LP   L+ L+KLR  +    ++L  +P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST---YNLKKLP 239

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 230 LVTLLLDGNRI-EEITDGFFQSLSTLRVLSLRGN----FPPSTLPSGISGLVSLHHLDLS 284
           + +L +    + +         L   +V+ L            + S +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 285 STDIT--GLPQELKALE----KLRYLNL 306
           S ++   G+   L+ L+    K++ L+L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 241 EEITDGFFQSLSTLRVLSLRGN----FPPSTLPSGISGLVSLHHLDLSSTDIT--GLPQE 294
            E+  G  Q  S LRVL L          S+L + +    SL  LDLS+  +   G+ Q 
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 295 LKALE----KLRYLNLDYAFHLSIIPHQLISCFSKLEVLR 330
           ++++      L  L L   +    +  +L +       LR
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 40/286 (13%), Positives = 87/286 (30%), Gaps = 34/286 (11%)

Query: 257 LSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIP 316
           L+ + N  P      +S    +       + +     E  +  ++++++L  +       
Sbjct: 7   LTGK-NLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 317 HQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL 376
           H ++S  SKL+ L L G             +       L K    L  LN+   S  S  
Sbjct: 64  HGILSQCSKLQNLSLEGL-----------RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEF 111

Query: 377 AVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTE 436
           A+Q  L     +      W    T       V H++       L     NL++  + +  
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 437 EVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEV 496
                  +   + +       +         +  L+ L++         ++ +L +    
Sbjct: 172 RRCPNLVHLDLSDS----VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE---- 223

Query: 497 IGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL 542
                   P L+ L ++      ++    +  P L+     +C   
Sbjct: 224 -------IPTLKTLQVFGIVPDGTLQLLKEALPHLQ----INCSHF 258

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLR 260
           N I  +S + + P L+ + L  N+I +++     + S L +++L 
Sbjct: 183 NKISDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 270 SGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
           S ++ L +L  + L +  I+ +   L     L  + L
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 238 NRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285
           N + E+  G    L  L  L L+ N    T+P G  G   L    L  
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	542
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.06
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	85.73

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=1.6e-20  Score=186.07  Aligned_cols=278  Identities=17%  Similarity=0.232  Sum_probs=171.8

Q ss_pred             cccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847          203 EEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD  282 (542)
Q Consensus       203 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~  282 (542)
                      ..+.+++.|++.++.++.+..+..+++|++|++++|.++.+++  ++.+++|++|++++| .+..++ .++.+.+|++|+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~-~l~~l~~L~~L~  116 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLT  116 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEE
T ss_pred             HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc-cccccc-cccccccccccc
Confidence            3445677777777777777667777777777777777776654  677777777777777 455555 367777777777


Q ss_pred             ccCCCCCccc----------------------------------------------------------------HHhhcC
Q 037847          283 LSSTDITGLP----------------------------------------------------------------QELKAL  298 (542)
Q Consensus       283 l~~~~i~~lp----------------------------------------------------------------~~i~~l  298 (542)
                      ++++.++.++                                                                .....+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            7766554432                                                                123334


Q ss_pred             CCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHH
Q 037847          299 EKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAV  378 (542)
Q Consensus       299 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~  378 (542)
                      ++++.+++++| .+..++.  .+..++|++|++.+|.+.                 .+..+..+++|+.+++..+.....
T Consensus       197 ~~~~~l~l~~n-~i~~~~~--~~~~~~L~~L~l~~n~l~-----------------~~~~l~~l~~L~~L~l~~n~l~~~  256 (384)
T d2omza2         197 TNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLK-----------------DIGTLASLTNLTDLDLANNQISNL  256 (384)
T ss_dssp             TTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC-----------------CCGGGGGCTTCSEEECCSSCCCCC
T ss_pred             cccceeeccCC-ccCCCCc--ccccCCCCEEECCCCCCC-----------------CcchhhcccccchhccccCccCCC
Confidence            44555555554 2333332  233445555555555432                 112345556666666554432221


Q ss_pred             HHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCC
Q 037847          379 QKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCR  458 (542)
Q Consensus       379 ~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~  458 (542)
                      ..+.    ..+.++.+.+......    ....+..++.++.+.+..|.+..+.          ....+++++.|++++|.
T Consensus       257 ~~~~----~~~~L~~L~l~~~~l~----~~~~~~~~~~l~~l~~~~n~l~~~~----------~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         257 APLS----GLTKLTELKLGANQIS----NISPLAGLTALTNLELNENQLEDIS----------PISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             GGGT----TCTTCSEEECCSSCCC----CCGGGTTCTTCSEEECCSSCCSCCG----------GGGGCTTCSEEECCSSC
T ss_pred             Cccc----ccccCCEeeccCcccC----CCCcccccccccccccccccccccc----------ccchhcccCeEECCCCC
Confidence            1111    1233455555443311    1223445566666666666554421          12447899999999998


Q ss_pred             CCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeecc
Q 037847          459 GKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFH  538 (542)
Q Consensus       459 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~  538 (542)
                      +..++.+..+++|++|++++|.+++++              ....+++|++|++.++ .++.++. ...+++|+.|+|++
T Consensus       319 l~~l~~l~~l~~L~~L~L~~n~l~~l~--------------~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         319 ISDISPVSSLTKLQRLFFANNKVSDVS--------------SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             CSCCGGGGGCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCC
T ss_pred             CCCCcccccCCCCCEEECCCCCCCCCh--------------hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCC
Confidence            865667889999999999999888763              3456899999999886 5777653 56789999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=2.7e-19  Score=171.38  Aligned_cols=269  Identities=17%  Similarity=0.173  Sum_probs=155.1

Q ss_pred             CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEecc
Q 037847          228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD  307 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  307 (542)
                      +++++|++++|.++.+++..|..+++|++|++++|......|..|.++++|++|++++|+++.+|..  ....+..|++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhcc
Confidence            4455555555555555544455555555555555522222244455555555555555555555543  23345555555


Q ss_pred             CCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchh
Q 037847          308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKL  387 (542)
Q Consensus       308 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~  387 (542)
                      ++ .+..++...+.....++.+....+....             .......+..+++|+.+++..+....   +.  ...
T Consensus       109 ~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~-------------~~~~~~~~~~l~~L~~l~l~~n~l~~---l~--~~~  169 (305)
T d1xkua_         109 EN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKLSYIRIADTNITT---IP--QGL  169 (305)
T ss_dssp             SS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTCCEEECCSSCCCS---CC--SSC
T ss_pred             cc-chhhhhhhhhhccccccccccccccccc-------------cCCCccccccccccCccccccCCccc---cC--ccc
Confidence            54 3334443334444445555544433211             11112223444444444444332110   00  111


Q ss_pred             hccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh
Q 037847          388 VSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV  466 (542)
Q Consensus       388 ~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~  466 (542)
                      ...++.+.+.+...  .......+..++.++.|++++|.+..++...+.        .+++|++|+|++|.+ ..+..+.
T Consensus       170 ~~~L~~L~l~~n~~--~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~--------~l~~L~~L~L~~N~L~~lp~~l~  239 (305)
T d1xkua_         170 PPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NTPHLRELHLNNNKLVKVPGGLA  239 (305)
T ss_dssp             CTTCSEEECTTSCC--CEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--------GSTTCCEEECCSSCCSSCCTTTT
T ss_pred             CCccCEEECCCCcC--CCCChhHhhcccccccccccccccccccccccc--------ccccceeeecccccccccccccc
Confidence            23445555544331  112224567788999999999999887665553        389999999999999 6666788


Q ss_pred             hccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceE
Q 037847          467 FVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKI  534 (542)
Q Consensus       467 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L  534 (542)
                      .+++|++|+|++|+++.++...+...      ......++|+.|.|.+++ ++.++..+++|++++..
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~------~~~~~~~~L~~L~L~~N~-~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPP------GYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCS------SCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCG
T ss_pred             cccCCCEEECCCCccCccChhhccCc------chhcccCCCCEEECCCCc-CccCcCCHhHhcccccC
Confidence            99999999999999998865333221      234457889999999976 67667777788887643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=3.6e-19  Score=176.25  Aligned_cols=272  Identities=18%  Similarity=0.242  Sum_probs=206.2

Q ss_pred             EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847          188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST  267 (542)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  267 (542)
                      .+...+.++..+..+..++++++|++++|.++.++.+.++++|++|++++|.+..+++  ++.+++|++|+++++. ...
T Consensus        48 ~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~-~~~  124 (384)
T d2omza2          48 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ-ITD  124 (384)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCC
T ss_pred             EEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc--cccccccccccccccc-ccc
Confidence            3444555566666677789999999999999999889999999999999999887765  8899999999998763 221


Q ss_pred             C----------------------------------------------------------------ccccCCCCCCCEEec
Q 037847          268 L----------------------------------------------------------------PSGISGLVSLHHLDL  283 (542)
Q Consensus       268 l----------------------------------------------------------------p~~i~~l~~L~~L~l  283 (542)
                      +                                                                +.....+.+++++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l  204 (384)
T d2omza2         125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA  204 (384)
T ss_dssp             CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeec
Confidence            1                                                                123455788999999


Q ss_pred             cCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcccc
Q 037847          284 SSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK  363 (542)
Q Consensus       284 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  363 (542)
                      +++.++.++. .+..++|++|++++| .+..+|.  +..+++|+.|++.+|.+.+.                 ..+..++
T Consensus       205 ~~n~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~  263 (384)
T d2omza2         205 TNNQISDITP-LGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQISNL-----------------APLSGLT  263 (384)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC-----------------GGGTTCT
T ss_pred             cCCccCCCCc-ccccCCCCEEECCCC-CCCCcch--hhcccccchhccccCccCCC-----------------Ccccccc
Confidence            9999988764 577899999999999 6777765  78899999999999986532                 2366778


Q ss_pred             CCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccc
Q 037847          364 HLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFR  443 (542)
Q Consensus       364 ~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  443 (542)
                      +|+.++++.+.......+..    ...++.+.+.....    .....+..+++++.|++++|.+.+++.          .
T Consensus       264 ~L~~L~l~~~~l~~~~~~~~----~~~l~~l~~~~n~l----~~~~~~~~~~~l~~L~ls~n~l~~l~~----------l  325 (384)
T d2omza2         264 KLTELKLGANQISNISPLAG----LTALTNLELNENQL----EDISPISNLKNLTYLTLYFNNISDISP----------V  325 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTT----CTTCSEEECCSSCC----SCCGGGGGCTTCSEEECCSSCCSCCGG----------G
T ss_pred             cCCEeeccCcccCCCCcccc----cccccccccccccc----ccccccchhcccCeEECCCCCCCCCcc----------c
Confidence            88888887665332222211    12234444443331    123456778999999999999877421          2


Q ss_pred             ccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccC
Q 037847          444 NGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRG  515 (542)
Q Consensus       444 ~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  515 (542)
                      ..+++|++|++++|.+..++.++.+++|++|++++|++++++              ....+++|+.|+|++.
T Consensus       326 ~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~--------------~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT--------------PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCG--------------GGTTCTTCSEEECCCE
T ss_pred             ccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCCh--------------hhccCCCCCEeeCCCC
Confidence            458999999999998866778999999999999999998774              3567999999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=1.2e-18  Score=167.51  Aligned_cols=246  Identities=21%  Similarity=0.196  Sum_probs=130.2

Q ss_pred             CccEEEccCccccc---ccchhhccCCCccEEEecC-CCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhhcCCCCCE
Q 037847          229 RLVTLLLDGNRIEE---ITDGFFQSLSTLRVLSLRG-NFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLRY  303 (542)
Q Consensus       229 ~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~-~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~  303 (542)
                      +++.|+++++.+..   +|+ .++++++|++|++++ |.....+|.+|+++++|++|++++|++.. .|..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~-~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCCh-HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            34555555554432   222 255555555555554 22233555555555555555555555555 2334555555555


Q ss_pred             EeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC-ceeeeEecchHH--HHH
Q 037847          304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL-NVLSWSFGSSLA--VQK  380 (542)
Q Consensus       304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~~l~~~~~~~~~--~~~  380 (542)
                      +++++|.....+|.. +++++.|+++++++|.+.+.+|.               .+..+..+ +.+.+..+....  ...
T Consensus       130 l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~---------------~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPD---------------SYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCG---------------GGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             cccccccccccCchh-hccCcccceeecccccccccccc---------------cccccccccccccccccccccccccc
Confidence            555555444455544 55555555555555554433332               12222222 222222111000  000


Q ss_pred             hhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-
Q 037847          381 FLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-  459 (542)
Q Consensus       381 l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-  459 (542)
                      +...     ....+.+.....  ..........+++|+.+++.++.+...++. +        ..+++|+.|+|++|.+ 
T Consensus       194 ~~~l-----~~~~l~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-~--------~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         194 FANL-----NLAFVDLSRNML--EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V--------GLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             GGGC-----CCSEEECCSSEE--EECCGGGCCTTSCCSEEECCSSEECCBGGG-C--------CCCTTCCEEECCSSCCE
T ss_pred             cccc-----cccccccccccc--cccccccccccccccccccccccccccccc-c--------ccccccccccCccCeec
Confidence            0000     001111111110  000112345678899999998877653221 1        3378999999999999 


Q ss_pred             -CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccc
Q 037847          460 -KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKS  520 (542)
Q Consensus       460 -~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  520 (542)
                       ..|..++++++|++|+|++|+++....             ..+.+.+|+.+.+.+.+.+..
T Consensus       258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-------------~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-------------QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECC-------------CSTTGGGSCGGGTCSSSEEES
T ss_pred             ccCChHHhCCCCCCEEECcCCcccccCC-------------CcccCCCCCHHHhCCCccccC
Confidence             666779999999999999998873221             335678888888888765544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=5.7e-17  Score=154.86  Aligned_cols=262  Identities=16%  Similarity=0.160  Sum_probs=185.1

Q ss_pred             CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEec
Q 037847          229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNL  306 (542)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l  306 (542)
                      ..++++-++.+++.+|+. +  .+++++|++++| .+..+|+ +|..+++|++|++++|.+..+ |..+.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~-l--~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS-C--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCC-C--CCCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            456777777778888775 3  368999999999 7888886 689999999999999999987 566899999999999


Q ss_pred             cCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCch
Q 037847          307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPK  386 (542)
Q Consensus       307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~  386 (542)
                      ++| .++.+|..   ....++.|...++.+.+..               ...+.....+..+....+.............
T Consensus        87 ~~n-~l~~l~~~---~~~~l~~L~~~~n~l~~l~---------------~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~  147 (305)
T d1xkua_          87 SKN-QLKELPEK---MPKTLQELRVHENEITKVR---------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQ  147 (305)
T ss_dssp             CSS-CCSBCCSS---CCTTCCEEECCSSCCCBBC---------------HHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred             cCC-ccCcCccc---hhhhhhhhhccccchhhhh---------------hhhhhccccccccccccccccccCCCccccc
Confidence            999 68888864   3467889999888765321               1122333444444444332211111111222


Q ss_pred             hhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC--CCcch
Q 037847          387 LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTW  464 (542)
Q Consensus       387 ~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~  464 (542)
                      ....++.+.+.++.....     ....+++|++|++++|.........+        ..++.++.|++++|.+  ....+
T Consensus       148 ~l~~L~~l~l~~n~l~~l-----~~~~~~~L~~L~l~~n~~~~~~~~~~--------~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         148 GMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGNKITKVDAASL--------KGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             GCTTCCEEECCSSCCCSC-----CSSCCTTCSEEECTTSCCCEECTGGG--------TTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccCccccccCCcccc-----CcccCCccCEEECCCCcCCCCChhHh--------hcccccccccccccccccccccc
Confidence            234456666655542111     11235789999999998877544433        3378899999999988  33456


Q ss_pred             hhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCC-------CCCCCCcceEeec
Q 037847          465 LVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-------PQPFPKLKKIQAF  537 (542)
Q Consensus       465 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~~~~p~L~~L~i~  537 (542)
                      +.++++|++|+|++|.++.++.             ....+++|++|+++++ +++.++..       ....++|+.|++.
T Consensus       215 ~~~l~~L~~L~L~~N~L~~lp~-------------~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~  280 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLVKVPG-------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF  280 (305)
T ss_dssp             GGGSTTCCEEECCSSCCSSCCT-------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             ccccccceeeeccccccccccc-------------ccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECC
Confidence            7889999999999999988743             6677999999999996 57776532       2246889999998


Q ss_pred             cCC
Q 037847          538 HCR  540 (542)
Q Consensus       538 ~C~  540 (542)
                      +.|
T Consensus       281 ~N~  283 (305)
T d1xkua_         281 SNP  283 (305)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.2e-17  Score=153.19  Aligned_cols=127  Identities=20%  Similarity=0.247  Sum_probs=104.1

Q ss_pred             ccceEEEeecCCcCCCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEecc
Q 037847          206 EGAKRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS  284 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~  284 (542)
                      .....++.++++++.+|. +.  +++++|++++|.++.+++..|..+++|++|++++| .+..+| .++.+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccc-cccccccccccccc
Confidence            344556777778888874 32  57899999999998888877899999999999999 677777 56789999999999


Q ss_pred             CCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          285 STDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       285 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      +|.++..|..+..+++|+.|+++++ ....++...+..+.++++|.+.+|.+.
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccccccccccccccccccccc-ccceeeccccccccccccccccccccc
Confidence            9999988888899999999999998 455565555788889999999887654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.70  E-value=7.7e-18  Score=161.66  Aligned_cols=245  Identities=16%  Similarity=0.168  Sum_probs=174.5

Q ss_pred             ccceEEEeecCCcCC---CC-CCCCCCCccEEEccC-cccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847          206 EGAKRISLTANGIGS---LS-EIPTCPRLVTLLLDG-NRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH  280 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~  280 (542)
                      .+++.|++.++.+..   +| .+.++++|++|++++ |.+....|..|+++++|++|++++|+.....|..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368899999988875   43 588999999999997 6777433444899999999999999555556777889999999


Q ss_pred             EeccCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCC-cEEeccCccccccccCCCCccccCCCcchhHh
Q 037847          281 LDLSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL-EVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE  358 (542)
Q Consensus       281 L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (542)
                      +++++|.+.. +|..++++++|+++++++|.....+|.. +..+.++ +.+.+++|.+.+..|.               .
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~~---------------~  193 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPP---------------T  193 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCG---------------G
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccccccccc---------------c
Confidence            9999986554 8999999999999999999766688886 6777765 8899998887654432               2


Q ss_pred             hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847          359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV  438 (542)
Q Consensus       359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  438 (542)
                      +..+..+ .+++..+....  ...........++.+.+......   .....+..+++|+.|++++|.+....+..+   
T Consensus       194 ~~~l~~~-~l~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~l~---~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l---  264 (313)
T d1ogqa_         194 FANLNLA-FVDLSRNMLEG--DASVLFGSDKNTQKIHLAKNSLA---FDLGKVGLSKNLNGLDLRNNRIYGTLPQGL---  264 (313)
T ss_dssp             GGGCCCS-EEECCSSEEEE--CCGGGCCTTSCCSEEECCSSEEC---CBGGGCCCCTTCCEEECCSSCCEECCCGGG---
T ss_pred             ccccccc-ccccccccccc--ccccccccccccccccccccccc---ccccccccccccccccCccCeecccCChHH---
Confidence            2333222 23332221100  01111112234455555444321   122345667899999999999986433334   


Q ss_pred             cccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccc
Q 037847          439 KKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT  480 (542)
Q Consensus       439 ~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~  480 (542)
                           ..+++|++|+|++|.+ ..+|.++++++|+.+++++|+
T Consensus       265 -----~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         265 -----TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -----GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             -----hCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence                 3489999999999998 466777889999999999965

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=4.1e-17  Score=148.67  Aligned_cols=78  Identities=23%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             CCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEec
Q 037847          227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL  306 (542)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  306 (542)
                      +.+|+.|.+.+|.++.+..  ++.+++|++|++++| .+..++ .+..+.+|+++++++|.++.++ .+..+++|+.+++
T Consensus        40 l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n-~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCc-eeeccc-cccccccccccccccccccccc-ccccccccccccc
Confidence            3444444444444444321  444444444444444 233332 2444444444444444444432 2344444444444


Q ss_pred             cCC
Q 037847          307 DYA  309 (542)
Q Consensus       307 ~~~  309 (542)
                      +++
T Consensus       115 ~~~  117 (227)
T d1h6ua2         115 TST  117 (227)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-16  Score=147.70  Aligned_cols=199  Identities=19%  Similarity=0.155  Sum_probs=139.7

Q ss_pred             CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEE
Q 037847          226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQELKALEKLRYL  304 (542)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  304 (542)
                      +...+...+.++++++.+|+. +.  +++++|+|++| .+..+| ..|.++++|++|++++|.++.+|. ++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~-lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPD-LP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-CC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCeeCcC-cC--cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-cccccccccc
Confidence            344555668888888887765 32  57899999999 677776 468889999999999999988874 5788999999


Q ss_pred             eccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcC
Q 037847          305 NLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKY  384 (542)
Q Consensus       305 ~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~  384 (542)
                      ++++| .+...+.. +..+++|+.|+++++...+..+               .....+.+++.+.+..+..         
T Consensus        83 ~Ls~N-~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~---------------~~~~~l~~l~~L~l~~n~l---------  136 (266)
T d1p9ag_          83 DLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSLPL---------------GALRGLGELQELYLKGNEL---------  136 (266)
T ss_dssp             ECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCCCS---------------STTTTCTTCCEEECTTSCC---------
T ss_pred             ccccc-cccccccc-cccccccccccccccccceeec---------------ccccccccccccccccccc---------
Confidence            99998 56666664 7888999999998887643211               1133445555555443221         


Q ss_pred             chhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcc
Q 037847          385 PKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLT  463 (542)
Q Consensus       385 ~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~  463 (542)
                                         .......+..+++|+.|++++|.+..++.+.+.        .+++|++|+|++|.+ ..++
T Consensus       137 -------------------~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~--------~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         137 -------------------KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--------GLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             -------------------CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT--------TCTTCCEEECCSSCCCCCCT
T ss_pred             -------------------ceeccccccccccchhcccccccccccCccccc--------cccccceeecccCCCcccCh
Confidence                               011122344567888888888888776655443        378888888888888 5555


Q ss_pred             hhhhccCcceEEEeccchh
Q 037847          464 WLVFVQNLKQLNMQGFTME  482 (542)
Q Consensus       464 ~l~~l~~L~~L~L~~~~l~  482 (542)
                      .+..+++|+.|+|++|.+.
T Consensus       190 ~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCCCSEEECCSCCBC
T ss_pred             hHCCCCCCCEEEecCCCCC
Confidence            6777888888888887644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.4e-16  Score=140.62  Aligned_cols=192  Identities=24%  Similarity=0.381  Sum_probs=146.6

Q ss_pred             CcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCC
Q 037847          200 PKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH  279 (542)
Q Consensus       200 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~  279 (542)
                      .....+.+++.+++.++.+..++.+..+++|+.|++++|.+..+.+  +..+++|+++++++| ..+.++ .++.+++|+
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~  110 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIK  110 (227)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCC
T ss_pred             CCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccc-cccccc-ccccccccc
Confidence            3445678899999999999999889999999999999999887765  889999999999999 677776 688999999


Q ss_pred             EEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhh
Q 037847          280 HLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKEL  359 (542)
Q Consensus       280 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  359 (542)
                      +++++++....++ .+.....+..+.++++ .+...+.  +.++++|++|++.+|.+..                     
T Consensus       111 ~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~--~~~~~~L~~L~l~~n~~~~---------------------  165 (227)
T d1h6ua2         111 TLDLTSTQITDVT-PLAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD---------------------  165 (227)
T ss_dssp             EEECTTSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC---------------------
T ss_pred             ccccccccccccc-hhccccchhhhhchhh-hhchhhh--hcccccccccccccccccc---------------------
Confidence            9999998777664 3567788899998887 3444433  5677888888888775421                     


Q ss_pred             ccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhc
Q 037847          360 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK  439 (542)
Q Consensus       360 ~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  439 (542)
                                                                      ...+..+++|++|++++|.+..++.  +    
T Consensus       166 ------------------------------------------------~~~l~~l~~L~~L~Ls~n~l~~l~~--l----  191 (227)
T d1h6ua2         166 ------------------------------------------------LTPLANLSKLTTLKADDNKISDISP--L----  191 (227)
T ss_dssp             ------------------------------------------------CGGGTTCTTCCEEECCSSCCCCCGG--G----
T ss_pred             ------------------------------------------------chhhcccccceecccCCCccCCChh--h----
Confidence                                                            0113345677777777776655321  1    


Q ss_pred             ccccccccccCEEEEccCCCCCcchhhhccCcceEEEec
Q 037847          440 KLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG  478 (542)
Q Consensus       440 ~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~  478 (542)
                          ..+++|++|+|++|++..+++++++++|++|+|++
T Consensus       192 ----~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         192 ----ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             ----GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             ----cCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence                33677888888888775566677888888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.5e-16  Score=145.31  Aligned_cols=64  Identities=14%  Similarity=0.096  Sum_probs=46.1

Q ss_pred             cccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-C-CcchhhhccCcceEEEeccchh
Q 037847          411 LAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-K-DLTWLVFVQNLKQLNMQGFTME  482 (542)
Q Consensus       411 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~-~~~~l~~l~~L~~L~L~~~~l~  482 (542)
                      +..+++|+.+++++|.+..+.+..+.        .+++|+.|++++|.+ . .+..++.+++|++|+|++|.+.
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~--------~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFR--------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hccccccchhhhhhccccccChhHhh--------hhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            44567888888888888776555443        377888888888888 3 3335778888888888887665

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.66  E-value=7.5e-18  Score=157.68  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=86.1

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF   83 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~   83 (542)
                      ++|+|++|+++|||+||+++||...  .++..++++++||++|+|+||||+++|+.|+. ++.++|.+..+.+++.... 
T Consensus       178 ~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~-k~~~~~~~~~~~L~~~~~~-  253 (277)
T d2a5yb3         178 EFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KTFEKMAQLNNKLESRGLV-  253 (277)
T ss_dssp             EEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SSHHHHHHHHHHHHHHCSS-
T ss_pred             ceEECCCCCHHHHHHHHHHHhCCcc--CchhhHHHHHHHHHHhCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHhcCcHH-
Confidence            5799999999999999999998664  34567899999999999999999999999987 6889999988888764322 


Q ss_pred             CCChHHHHHHHHhhcCCCCchhhhHHHhh
Q 037847           84 SGMKEEVFSRLKFSYDSLSTDELRSCLLY  112 (542)
Q Consensus        84 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl~  112 (542)
                           ++..++++||++||+ ++|.||-+
T Consensus       254 -----~v~~il~~sY~~L~~-~lk~c~~~  276 (277)
T d2a5yb3         254 -----GVECITPYSYKSLAM-ALQRCVEV  276 (277)
T ss_dssp             -----TTCCCSSSSSSSHHH-HHHHHHHT
T ss_pred             -----HHHHHHHHHHhcccH-HHHHHHHh
Confidence                 688999999999999 89999965

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8.4e-16  Score=137.83  Aligned_cols=100  Identities=25%  Similarity=0.343  Sum_probs=48.5

Q ss_pred             CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEecc
Q 037847          228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD  307 (542)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  307 (542)
                      ..|+.|+++++.++.+..  +..+++|++|++++| .+..++ .++.+++|++|++++|.++.+| .+..+++|+.|+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCCchh--HhhCCCCCEEeCCCc-cccCcc-ccccCccccccccccccccccc-cccccccccccccc
Confidence            344444555554444332  444555555555555 344444 3445555555555555555554 34555555555555


Q ss_pred             CCcccCccchhhcCCCCCCcEEeccCcc
Q 037847          308 YAFHLSIIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       308 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                      +| ....++.  +..+++|+.+++.+|.
T Consensus       121 ~~-~~~~~~~--l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         121 HN-GISDING--LVHLPQLESLYLGNNK  145 (210)
T ss_dssp             TS-CCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             cc-ccccccc--cccccccccccccccc
Confidence            55 2333332  4445555555554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-15  Score=142.20  Aligned_cols=213  Identities=20%  Similarity=0.266  Sum_probs=149.4

Q ss_pred             EeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccC-CCCC
Q 037847          212 SLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSS-TDIT  289 (542)
Q Consensus       212 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~-~~i~  289 (542)
                      ...+.+++.+|.. -.+.+++|++++|.++.+++..|.++++|++|+++++ .+..+ +..+..+..++.+.... +.++
T Consensus        17 ~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          17 SCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             ECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             EcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccc
Confidence            4444555566531 1256778888888887777777788888888888887 44433 34455677777776654 4666


Q ss_pred             cc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCcee
Q 037847          290 GL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVL  368 (542)
Q Consensus       290 ~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l  368 (542)
                      .+ |..+.++++|++|++++| ....++...+..+.+|+.+++.+|.+.+..                            
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~----------------------------  145 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALP----------------------------  145 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------------
T ss_pred             cccchhhcccccCCEEecCCc-ccccccccccchhcccchhhhccccccccC----------------------------
Confidence            65 455677788888888777 444454444666777788877776543210                            


Q ss_pred             eeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccc
Q 037847          369 SWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN  448 (542)
Q Consensus       369 ~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  448 (542)
                                                             ...+..+++|++|++++|.+..++...+.        .+++
T Consensus       146 ---------------------------------------~~~f~~~~~L~~L~l~~N~l~~l~~~~f~--------~l~~  178 (284)
T d1ozna_         146 ---------------------------------------DDTFRDLGNLTHLFLHGNRISSVPERAFR--------GLHS  178 (284)
T ss_dssp             ---------------------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTT--------TCTT
T ss_pred             ---------------------------------------hhHhccccchhhcccccCcccccchhhhc--------cccc
Confidence                                                   01233457889999999998876655443        3899


Q ss_pred             cCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeeccc
Q 037847          449 LNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWR  514 (542)
Q Consensus       449 L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  514 (542)
                      |+.+.+++|.+  ..+..+..+++|++|++++|.+..++.            .....+++|++|++.+
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~------------~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------------EALAPLRALQYLRLND  234 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------------HHHTTCTTCCEEECCS
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccc------------cccccccccCEEEecC
Confidence            99999999998  445668899999999999999988754            2556789999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.5e-15  Score=134.87  Aligned_cols=100  Identities=20%  Similarity=0.278  Sum_probs=44.9

Q ss_pred             CCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEec
Q 037847          227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL  306 (542)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  306 (542)
                      +++++.|+++++.++.+..  ++.+++|++|++++| .+..++ .++.+++|++|++++|.+..+|. +..+++|++|++
T Consensus        39 l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N-~l~~~~-~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCccc--cccCCCcCcCccccc-cccCcc-cccCCcccccccccccccccccc-cccccccccccc
Confidence            3344444444444443322  444455555555554 333333 24445555555555544444432 444555555555


Q ss_pred             cCCcccCccchhhcCCCCCCcEEeccCc
Q 037847          307 DYAFHLSIIPHQLISCFSKLEVLRLCGC  334 (542)
Q Consensus       307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~  334 (542)
                      ++| ....++.  +..+++|+.|++++|
T Consensus       114 ~~~-~~~~~~~--~~~l~~L~~L~l~~n  138 (199)
T d2omxa2         114 FNN-QITDIDP--LKNLTNLNRLELSSN  138 (199)
T ss_dssp             CSS-CCCCCGG--GTTCTTCSEEECCSS
T ss_pred             ccc-ccccccc--cchhhhhHHhhhhhh
Confidence            444 2222222  344444555544444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.5e-15  Score=134.91  Aligned_cols=82  Identities=20%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             ccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcE
Q 037847          249 QSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV  328 (542)
Q Consensus       249 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~  328 (542)
                      ..+.++++|+++++ .+..++ .++.+++|++|++++|.++.++. ++++++|++|++++| ....++.  ++++++|+.
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP--LANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSE
T ss_pred             HHhcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-ccccccc--ccccccccc
Confidence            45677888888888 666665 57778888888888888887764 788888888888887 4556664  677888888


Q ss_pred             EeccCccc
Q 037847          329 LRLCGCGR  336 (542)
Q Consensus       329 L~l~~~~~  336 (542)
                      |++++|..
T Consensus       111 L~l~~~~~  118 (199)
T d2omxa2         111 LTLFNNQI  118 (199)
T ss_dssp             EECCSSCC
T ss_pred             cccccccc
Confidence            88877654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.59  E-value=1.5e-13  Score=133.38  Aligned_cols=295  Identities=16%  Similarity=0.166  Sum_probs=159.3

Q ss_pred             cCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc
Q 037847          192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG  271 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~  271 (542)
                      .+.+++.+|+.  ..+++.|++++|.++.+|..  ..+|+.|++++|.++.++.  +  .+.|++|++++| .+..+| .
T Consensus        46 s~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n-~l~~lp-~  115 (353)
T d1jl5a_          46 NNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN-QLEKLP-E  115 (353)
T ss_dssp             TTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS-CCSSCC-C
T ss_pred             CCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--h--cccccccccccc-cccccc-c
Confidence            34445555542  35677777777777776643  4567777777776655432  1  135777777777 566666 3


Q ss_pred             cCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCC---ccc
Q 037847          272 ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEG---NVL  348 (542)
Q Consensus       272 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~  348 (542)
                      ++.+.+|++|+++++.+...|..   ...+..+.+..+. ......  ++.++.++.+.+.++...........   ...
T Consensus       116 ~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~-~~~~~~--l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~  189 (353)
T d1jl5a_         116 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVA  189 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             hhhhccceeeccccccccccccc---cccccchhhcccc-cccccc--ccccccceeccccccccccccccccccccccc
Confidence            56677777777777766665543   3445555555542 222222  66778888888887765432211110   000


Q ss_pred             cCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCcc
Q 037847          349 CDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLE  428 (542)
Q Consensus       349 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  428 (542)
                      .......+.....++.|+.+.++.+....      .......+..+.+........      ....+.+...++..+...
T Consensus       190 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~------~~~~~~~l~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         190 GNNILEELPELQNLPFLTTIYADNNLLKT------LPDLPPSLEALNVRDNYLTDL------PELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSS------CCSCCTTCCEEECCSSCCSCC------CCCCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccccccccccccc------ccccccccccccccccccccc------cccccccccccccccccc
Confidence            11111223334566777777766543221      111122223333222211000      001122333333222221


Q ss_pred             cee---eccch------hhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCC
Q 037847          429 EMK---IDSTE------EVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGS  499 (542)
Q Consensus       429 ~~~---~~~~~------~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  499 (542)
                      .+.   .....      ....+ ...+++|++|+|++|.+..++  ..+++|++|+|++|++++++.             
T Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~L~~N~L~~l~~-------------  321 (353)
T d1jl5a_         258 GLSELPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPE-------------  321 (353)
T ss_dssp             EESCCCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-------------
T ss_pred             ccccccchhcccccccCccccc-cccCCCCCEEECCCCccCccc--cccCCCCEEECCCCcCCcccc-------------
Confidence            110   00000      00000 123689999999999984343  247899999999999887642             


Q ss_pred             cCCCCCccceeecccCCcccccCCCCCCCCCcceEeec
Q 037847          500 EHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAF  537 (542)
Q Consensus       500 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~  537 (542)
                         ..++|++|++++|+ ++++|..+   ++|++|.+.
T Consensus       322 ---~~~~L~~L~L~~N~-L~~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         322 ---LPQNLKQLHVEYNP-LREFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             ---CCTTCCEEECCSSC-CSSCCCCC---TTCCEEECC
T ss_pred             ---ccCCCCEEECcCCc-CCCCCccc---cccCeeECc
Confidence               25689999999986 88887544   578888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=4.8e-14  Score=136.85  Aligned_cols=272  Identities=19%  Similarity=0.172  Sum_probs=163.2

Q ss_pred             ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccC
Q 037847          206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS  285 (542)
Q Consensus       206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~  285 (542)
                      .++++|+++++.++.+|+.  .++|++|++++|.++.+|..    +.+|+.|++++| .+..++. +  ...|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~-l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSD-L--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCS-C--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhc-ccchhhh-h--ccccccccccc
Confidence            4678899999999998864  57899999999999887653    468999999998 5666653 2  24699999999


Q ss_pred             CCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847          286 TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL  365 (542)
Q Consensus       286 ~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  365 (542)
                      |.++.+|. ++++++|++|+++++ .....|..    ...+..+.+..+....                 ...+..++.+
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~----~~~l~~l~~~~~~~~~-----------------~~~l~~l~~l  164 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNNQLEE-----------------LPELQNLPFL  164 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSS-----------------CCCCTTCTTC
T ss_pred             cccccccc-hhhhccceeeccccc-cccccccc----cccccchhhccccccc-----------------cccccccccc
Confidence            99999985 688999999999988 45555542    3456677766554321                 1123445555


Q ss_pred             ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccch--hh-----
Q 037847          366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTE--EV-----  438 (542)
Q Consensus       366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~-----  438 (542)
                      +.+.+..+....      ..........+......    .........++.|+.+++++|....++.....  ..     
T Consensus       165 ~~L~l~~n~~~~------~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~  234 (353)
T d1jl5a_         165 TAIYADNNSLKK------LPDLPLSLESIVAGNNI----LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN  234 (353)
T ss_dssp             CEEECCSSCCSS------CCCCCTTCCEEECCSSC----CSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSS
T ss_pred             eecccccccccc------ccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccc
Confidence            555554332211      11111111112111111    01112234456666666666554432210000  00     


Q ss_pred             -cccccccccccCEEEEccCCC---C---------------CcchhhhccCcceEEEeccchhhhcccccccccccccCC
Q 037847          439 -KKLFRNGFRNLNTVVLRSCRG---K---------------DLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGS  499 (542)
Q Consensus       439 -~~~~~~~l~~L~~L~L~~c~~---~---------------~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  499 (542)
                       ........+.++...+..+..   .               .......+++|++|+|++|.++.++.             
T Consensus       235 ~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-------------  301 (353)
T d1jl5a_         235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-------------  301 (353)
T ss_dssp             CCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC-------------
T ss_pred             cccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc-------------
Confidence             000001122233333322211   0               00111236899999999999887642             


Q ss_pred             cCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847          500 EHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR  540 (542)
Q Consensus       500 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~  540 (542)
                         .+++|+.|++.+| .+++++.   .+++|++|++++|+
T Consensus       302 ---~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         302 ---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP  335 (353)
T ss_dssp             ---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             ---ccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc
Confidence               3789999999987 5788764   35799999999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=8.9e-14  Score=124.35  Aligned_cols=158  Identities=25%  Similarity=0.375  Sum_probs=114.6

Q ss_pred             EEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC
Q 037847          189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL  268 (542)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l  268 (542)
                      +...+..+..++.+..+.+++.|++.+|.+..++.+..+++|+.|++++|.++.++.  +..+++|+.|++++| ....+
T Consensus        51 L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~-~~~~~  127 (210)
T d1h6ta2          51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GISDI  127 (210)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCCCC
T ss_pred             EECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccccc-ccccc
Confidence            333444555556666677888888888888877777788888888888887776653  677888888888887 45555


Q ss_pred             ccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccc
Q 037847          269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL  348 (542)
Q Consensus       269 p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  348 (542)
                      + .+..+.++++++++++.++..+ .+..+++|+++++++| .+..++.  ++++++|++|++++|.+..          
T Consensus       128 ~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~--l~~l~~L~~L~Ls~N~i~~----------  192 (210)
T d1h6ta2         128 N-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD----------  192 (210)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB----------
T ss_pred             c-cccccccccccccccccccccc-cccccccccccccccc-ccccccc--ccCCCCCCEEECCCCCCCC----------
Confidence            4 5777788888888888777654 4677888888888888 5566665  7788888888888876531          


Q ss_pred             cCCCcchhHhhccccCCceeeeE
Q 037847          349 CDGAEPLMKELLGLKHLNVLSWS  371 (542)
Q Consensus       349 ~~~~~~~~~~l~~L~~L~~l~~~  371 (542)
                             +..+.++++|+.|+++
T Consensus       193 -------l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 -------LRALAGLKNLDVLELF  208 (210)
T ss_dssp             -------CGGGTTCTTCSEEEEE
T ss_pred             -------ChhhcCCCCCCEEEcc
Confidence                   2246677788877775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=126.87  Aligned_cols=84  Identities=14%  Similarity=0.022  Sum_probs=53.0

Q ss_pred             cccceeeecccCccceeeccchhhcccccccccccCEEE-EccCCCCCcc--hhhhccCcceEEEeccchhhhccccccc
Q 037847          415 ENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVV-LRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVEKLS  491 (542)
Q Consensus       415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~-L~~c~~~~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~  491 (542)
                      ..++.|+++++.+..++...+.         ..++.++. +.++.+..++  .+.++++|++|+|++|+++.++.     
T Consensus       153 ~~l~~L~l~~n~l~~i~~~~~~---------~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-----  218 (242)
T d1xwdc1         153 FESVILWLNKNGIQEIHNCAFN---------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----  218 (242)
T ss_dssp             SSCEEEECCSSCCCEECTTTTT---------TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS-----
T ss_pred             ccceeeeccccccccccccccc---------chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH-----
Confidence            4677888888888765433221         34555554 4555563333  36789999999999999887743     


Q ss_pred             ccccccCCcCCCCCccceeecccCCcccccC
Q 037847          492 DISEVIGSEHNFFPRLEYLTMWRGTNLKSVY  522 (542)
Q Consensus       492 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  522 (542)
                                ..|.+|..|..-++.+++.+|
T Consensus       219 ----------~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         219 ----------YGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             ----------SSCTTCCEEESSSEESSSCSC
T ss_pred             ----------HHHcCCcccccCcCCCCCcCC
Confidence                      235555555555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.7e-14  Score=135.62  Aligned_cols=183  Identities=20%  Similarity=0.200  Sum_probs=90.3

Q ss_pred             CCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847          274 GLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG  351 (542)
Q Consensus       274 ~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  351 (542)
                      ....|++||+++|.+..  ++..+.++++|++|++++|......+.. +.++++|++|++++|...              
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~i--------------  108 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF--------------  108 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSC--------------
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccc--------------
Confidence            34455555655554433  3444455556666666555322222332 455555666666555321              


Q ss_pred             CcchhHh-hccccCCceeeeEecchHHHHHhhc-CchhhccceeEEeccccCCCCCceec-ccccccccceeeecccCcc
Q 037847          352 AEPLMKE-LLGLKHLNVLSWSFGSSLAVQKFLK-YPKLVSITQSVWVECGTYTRPPFNVL-HLAYMENLQELELESCNLE  428 (542)
Q Consensus       352 ~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~l~~-~~~~~~~l~~l~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~  428 (542)
                      ....+.. ..++++|+.|+++++.......+.. .......++.+.+.++.......... ....+++|++|++++|...
T Consensus       109 td~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         109 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             cccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC
Confidence            1111111 2344555555555443221111111 11122344555554432111111112 2245678888888887543


Q ss_pred             c-eeeccchhhcccccccccccCEEEEccCCC---CCcchhhhccCcceEEEecc
Q 037847          429 E-MKIDSTEEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQGF  479 (542)
Q Consensus       429 ~-~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~  479 (542)
                      + ..+..+        ..+++|++|++++|..   ..+..++++|+|++|+++++
T Consensus       189 td~~~~~l--------~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         189 KNDCFQEF--------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGGGGG--------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             Cchhhhhh--------cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3 222211        3478888888888865   44455778888888888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.4e-13  Score=109.04  Aligned_cols=102  Identities=22%  Similarity=0.254  Sum_probs=68.2

Q ss_pred             cEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCc
Q 037847          231 VTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF  310 (542)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~  310 (542)
                      |+|++++|.++.++.  +..+.+|++|++++| .+..+|..++.+++|++|++++|.++.+| .++++++|++|++++| 
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N-   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC-
Confidence            466777776665543  666777777777777 56667666777777777777777777765 3677777777777777 


Q ss_pred             ccCccch-hhcCCCCCCcEEeccCcccc
Q 037847          311 HLSIIPH-QLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       311 ~~~~lp~-~~~~~l~~L~~L~l~~~~~~  337 (542)
                      .+..+|. ..++.+++|++|++++|++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            4444442 22566777777777777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-13  Score=117.99  Aligned_cols=137  Identities=18%  Similarity=0.189  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHh-hcC
Q 037847          220 SLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL-KAL  298 (542)
Q Consensus       220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l  298 (542)
                      ..+.+.++.++|.|++++|.++.++. .+..+++|++|++++| .+..++ .++.+++|++|++++|.++.+|..+ ..+
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             hhHhccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCccccccc
Confidence            34556677788999999998888764 3677899999999999 677775 6888999999999999999887654 579


Q ss_pred             CCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEe
Q 037847          299 EKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSF  372 (542)
Q Consensus       299 ~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~  372 (542)
                      ++|++|++++| .+..++. ..+..+++|++|++.+|++...            .......+..+++|+.|+...
T Consensus        87 ~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~------------~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          87 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEE
T ss_pred             cccccceeccc-cccccccccccccccccchhhcCCCccccc------------cchHHHHHHHCCCcCeeCCCC
Confidence            99999999998 5666653 2377889999999999886521            112223456677888777554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.1e-13  Score=108.57  Aligned_cols=118  Identities=20%  Similarity=0.266  Sum_probs=100.2

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI  288 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i  288 (542)
                      |.|++++|.++.++.+.++++|+.|++++|.++.+|+. ++.+++|++|++++| .+..+| .++.+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccC-ccccccccCeEECCCCcc
Confidence            57899999999999999999999999999999988765 889999999999999 788887 699999999999999999


Q ss_pred             Cccc--HHhhcCCCCCEEeccCCccc--CccchhhcCCCCCCcEE
Q 037847          289 TGLP--QELKALEKLRYLNLDYAFHL--SIIPHQLISCFSKLEVL  329 (542)
Q Consensus       289 ~~lp--~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~~l~~L~~L  329 (542)
                      +.+|  ..++.+++|++|++++|...  ..++..++..+++|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9876  46889999999999998432  22344445556777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-12  Score=118.11  Aligned_cols=222  Identities=14%  Similarity=0.144  Sum_probs=127.4

Q ss_pred             cEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCCc-cc-HHhhcCCCCCEEecc
Q 037847          231 VTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDITG-LP-QELKALEKLRYLNLD  307 (542)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~-lp-~~i~~l~~L~~L~l~  307 (542)
                      ++++.++.+++.+|+..+   .++++|++++| .+..+|. .|.++++|++|++++|.+.. +| ..+..+++++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            455666666666655422   45677777776 4555554 35667777777777765554 32 235566666776665


Q ss_pred             CCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchh
Q 037847          308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKL  387 (542)
Q Consensus       308 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~  387 (542)
                      .+..+..++...+.++++|+++++.+|.+....+                 .                            
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-----------------~----------------------------  121 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-----------------V----------------------------  121 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-----------------C----------------------------
T ss_pred             ccccccccccccccccccccccccchhhhccccc-----------------c----------------------------
Confidence            5545555554446666677777666655421000                 0                            


Q ss_pred             hccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh
Q 037847          388 VSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV  466 (542)
Q Consensus       388 ~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~  466 (542)
                                           ..+..++.+..+...++.+..++...+.       .....++.|++.++.+ .......
T Consensus       122 ---------------------~~~~~l~~l~~~~~~n~~l~~i~~~~~~-------~~~~~l~~L~l~~n~l~~i~~~~~  173 (242)
T d1xwdc1         122 ---------------------HKIHSLQKVLLDIQDNINIHTIERNSFV-------GLSFESVILWLNKNGIQEIHNCAF  173 (242)
T ss_dssp             ---------------------TTTCBSSCEEEEEESCTTCCEECTTSST-------TSBSSCEEEECCSSCCCEECTTTT
T ss_pred             ---------------------cccccccccccccccccccccccccccc-------cccccceeeecccccccccccccc
Confidence                                 0111122333333333333333222221       1134788899998888 3333444


Q ss_pred             hccCcceEEEec-cchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCC-CCCCCCcceEeeccCCCC
Q 037847          467 FVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAFHCRQL  542 (542)
Q Consensus       467 ~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~~C~~L  542 (542)
                      ..++++++.... +.+++++.            .....+++|++|++.++ ++++++.. ...++.|+.+++.++.+|
T Consensus       174 ~~~~l~~~~~l~~n~l~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLEELPN------------DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL  238 (242)
T ss_dssp             TTCCEEEEECTTCTTCCCCCT------------TTTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSEESSSCS
T ss_pred             cchhhhccccccccccccccH------------HHhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcCCCCCcC
Confidence            567777765544 88888753            24577999999999996 47887653 445667777776665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-13  Score=129.60  Aligned_cols=187  Identities=16%  Similarity=0.096  Sum_probs=112.1

Q ss_pred             hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecc
Q 037847          295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       295 i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                      .....+|++|++++|.........++.++++|++|++.+|.+.               ...+..+.++++|+.|+++.+.
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~---------------~~~~~~l~~~~~L~~L~Ls~c~  106 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS---------------DPIVNTLAKNSNLVRLNLSGCS  106 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC---------------HHHHHHHTTCTTCSEEECTTCB
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCC---------------cHHHHHHhcCCCCcCccccccc
Confidence            3456799999999984433333344788999999999999753               2566778888999999998765


Q ss_pred             hHHHHHhhcCchhhccceeEEeccccCCCCCceecccc-cccccceeeecccCc--cceeeccchhhcccccccccccCE
Q 037847          375 SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA-YMENLQELELESCNL--EEMKIDSTEEVKKLFRNGFRNLNT  451 (542)
Q Consensus       375 ~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~  451 (542)
                      ......+.......+.++.|++.++...........+. ..++|++|++++|..  ....+..+       ...+++|++
T Consensus       107 ~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-------~~~~~~L~~  179 (284)
T d2astb2         107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-------VRRCPNLVH  179 (284)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-------HHHCTTCSE
T ss_pred             cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccc-------ccccccccc
Confidence            44333333333334566777776654211110001111 235777777776532  11111100       123677777


Q ss_pred             EEEccCCC---CCcchhhhccCcceEEEec-cchhhhcccccccccccccCCcCCCCCccceeecccC
Q 037847          452 VVLRSCRG---KDLTWLVFVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRG  515 (542)
Q Consensus       452 L~L~~c~~---~~~~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  515 (542)
                      |++++|..   ..+..+..+++|++|+|++ +.+++...            .....+|+|+.|++.+|
T Consensus       180 L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l------------~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS
T ss_pred             cccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH------------HHHhcCCCCCEEeeeCC
Confidence            77777754   4555566777777777777 45544321            13345677777777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.4e-13  Score=112.97  Aligned_cols=130  Identities=20%  Similarity=0.275  Sum_probs=108.4

Q ss_pred             CCcccccccceEEEeecCCcCCCCCC-CCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCC
Q 037847          199 APKVEEWEGAKRISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLV  276 (542)
Q Consensus       199 ~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~  276 (542)
                      .+.+....++|.|++++|.+..++.+ ..+++|+.|++++|.++.++.  +..+++|++|++++| .+..+|.. +..++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~   87 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALP   87 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccc-cccCCCcccccccc
Confidence            34455567899999999999999764 678999999999999988754  889999999999999 67777755 45799


Q ss_pred             CCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccch---hhcCCCCCCcEEecc
Q 037847          277 SLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPH---QLISCFSKLEVLRLC  332 (542)
Q Consensus       277 ~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~  332 (542)
                      +|++|++++|.++.++.  .+..+++|++|++++| .+...|.   .++..+++|+.|+..
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccceeccccccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence            99999999999998874  6789999999999999 5555653   347789999999754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=4e-12  Score=111.63  Aligned_cols=127  Identities=22%  Similarity=0.307  Sum_probs=106.9

Q ss_pred             eEEEeecCCcCCCCCCCCCCCccEEEccCccccc-ccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC
Q 037847          209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEE-ITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD  287 (542)
Q Consensus       209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~  287 (542)
                      +.++.+++.+..+|.-. .+++++|++++|.++. .+...|..+++|+.|++++|......+..+..+.+|++|++++|.
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            35677788888887521 2689999999999965 556668999999999999995555566788899999999999999


Q ss_pred             CCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847          288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF  337 (542)
Q Consensus       288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  337 (542)
                      ++.+|.. +.++++|++|+|++| .++.+|.+++..+++|++|++.+|.+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccc
Confidence            9998654 788999999999999 788888877899999999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=4.7e-11  Score=104.65  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=38.3

Q ss_pred             EEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-c-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847          256 VLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-L-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG  333 (542)
Q Consensus       256 ~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  333 (542)
                      +++.+++ .+..+|..+.  .++++|+|++|.|+. + +..+..+++|++|++++| .+..++.+.+..+++|++|++++
T Consensus        12 ~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCC-CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeecc
Confidence            4444444 4445554442  355555555555543 2 233455555555555555 33333333355555555555555


Q ss_pred             ccc
Q 037847          334 CGR  336 (542)
Q Consensus       334 ~~~  336 (542)
                      |++
T Consensus        88 N~l   90 (192)
T d1w8aa_          88 NKI   90 (192)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-11  Score=124.26  Aligned_cols=103  Identities=19%  Similarity=0.309  Sum_probs=75.3

Q ss_pred             cceEEEeecCCcCCC---CCCCCCCCccEEEccCccccccc----chhhccCCCccEEEecCCCCCCc-----CccccC-
Q 037847          207 GAKRISLTANGIGSL---SEIPTCPRLVTLLLDGNRIEEIT----DGFFQSLSTLRVLSLRGNFPPST-----LPSGIS-  273 (542)
Q Consensus       207 ~l~~l~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----lp~~i~-  273 (542)
                      +++.|+++++.+...   .-+..++++++|.+++|.++...    ...+..+++|++|+|++| .+..     +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhc
Confidence            578899999988752   12456788899999999876432    233678899999999998 4432     222232 


Q ss_pred             CCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCc
Q 037847          274 GLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAF  310 (542)
Q Consensus       274 ~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~  310 (542)
                      ...+|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            23579999999998875     45667888999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.04  E-value=4e-12  Score=111.86  Aligned_cols=112  Identities=25%  Similarity=0.292  Sum_probs=90.7

Q ss_pred             CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCC
Q 037847          223 EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLR  302 (542)
Q Consensus       223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~  302 (542)
                      .+..+++|+.|++++|.++.++.  +..+++|++|++++| .+..+|..+..+.+|++|++++|.++.++ .+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred             HHhcccccceeECcccCCCCccc--ccCCccccChhhccc-ccccccccccccccccccccccccccccc-ccccccccc
Confidence            35678889999999998887754  788999999999999 67778765566678999999999988874 588899999


Q ss_pred             EEeccCCcccCccch-hhcCCCCCCcEEeccCcccccc
Q 037847          303 YLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGV  339 (542)
Q Consensus       303 ~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~  339 (542)
                      +|++++| .+..++. ..+..+++|++|++++|++...
T Consensus       119 ~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         119 VLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccc-hhccccccccccCCCccceeecCCCccccC
Confidence            9999998 5666653 2378899999999999886543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=3.6e-12  Score=112.20  Aligned_cols=127  Identities=27%  Similarity=0.283  Sum_probs=103.1

Q ss_pred             ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847          202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL  281 (542)
Q Consensus       202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L  281 (542)
                      +..+.++++|++++|.+..++.+.++++|++|++++|.++.++.. +..+++|++|++++| .+..++ .+..+++|++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccc-cccccc-ccccccccccc
Confidence            556788999999999999998888999999999999999887653 455678999999999 677765 58889999999


Q ss_pred             eccCCCCCccc--HHhhcCCCCCEEeccCCcccCccch---------hhcCCCCCCcEEec
Q 037847          282 DLSSTDITGLP--QELKALEKLRYLNLDYAFHLSIIPH---------QLISCFSKLEVLRL  331 (542)
Q Consensus       282 ~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~---------~~~~~l~~L~~L~l  331 (542)
                      ++++|.++.++  ..+..+++|++|++++|......+.         .++..+++|+.|+-
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            99999999886  4688999999999999843222221         12456788888763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.7e-09  Score=89.39  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=70.4

Q ss_pred             CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEec
Q 037847          229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNL  306 (542)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l  306 (542)
                      ...++...++.+...+.. +..+++|+.|+++++..++.++ ..|..+.+|+.|++++|+|+.++ ..+..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            344556666655555544 5667777777776664566664 34677777888888777777764 44677778888888


Q ss_pred             cCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847          307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                      ++| .++.+|.+.+.. .+|++|++.+|++
T Consensus        88 s~N-~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFN-ALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             CSS-CCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             cCC-CCcccChhhhcc-ccccccccCCCcc
Confidence            777 566777764443 3677888877764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.9e-10  Score=115.13  Aligned_cols=150  Identities=16%  Similarity=0.114  Sum_probs=75.6

Q ss_pred             HhhccccCCceeeeEecchH--HHHHhhcC-chhhccceeEEeccccCCCCCcee--cccccccccceeeecccCcccee
Q 037847          357 KELLGLKHLNVLSWSFGSSL--AVQKFLKY-PKLVSITQSVWVECGTYTRPPFNV--LHLAYMENLQELELESCNLEEMK  431 (542)
Q Consensus       357 ~~l~~L~~L~~l~~~~~~~~--~~~~l~~~-~~~~~~l~~l~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~  431 (542)
                      ..+...+.+..++++.+...  ....+... ......++.+.+..+.........  ..+...++|++|++++|.+....
T Consensus       277 ~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g  356 (460)
T d1z7xw1         277 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  356 (460)
T ss_dssp             HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             ccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc
Confidence            34455666666666655432  12222111 112234566666554421111110  12234567888888888765421


Q ss_pred             eccchhhcccccccccccCEEEEccCCCC--Ccc----hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCC
Q 037847          432 IDSTEEVKKLFRNGFRNLNTVVLRSCRGK--DLT----WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFP  505 (542)
Q Consensus       432 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~~--~~~----~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  505 (542)
                      ...+..   .-....+.|++|+|++|.+.  .+.    .+...++|++|+|++|.+.+.........       -...-.
T Consensus       357 ~~~l~~---~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~-------l~~~~~  426 (460)
T d1z7xw1         357 VRELCQ---GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES-------VRQPGC  426 (460)
T ss_dssp             HHHHHH---HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH-------HTSTTC
T ss_pred             cchhhh---hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH-------HHhCCC
Confidence            111100   00112466888899888772  222    24566888999998888765332111111       111234


Q ss_pred             ccceeecccCC
Q 037847          506 RLEYLTMWRGT  516 (542)
Q Consensus       506 ~L~~L~l~~c~  516 (542)
                      +|+.|.+.++.
T Consensus       427 ~L~~l~l~~~~  437 (460)
T d1z7xw1         427 LLEQLVLYDIY  437 (460)
T ss_dssp             CCCEEECTTCC
T ss_pred             ccCEEECCCCC
Confidence            68888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.87  E-value=1e-09  Score=105.44  Aligned_cols=138  Identities=15%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             CCCCCccEEEccCccccccc----chhhccCCCccEEEecCCCCCCc-----------CccccCCCCCCCEEeccCCCCC
Q 037847          225 PTCPRLVTLLLDGNRIEEIT----DGFFQSLSTLRVLSLRGNFPPST-----------LPSGISGLVSLHHLDLSSTDIT  289 (542)
Q Consensus       225 ~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----------lp~~i~~l~~L~~L~l~~~~i~  289 (542)
                      .+...++.|++++|.+....    ...+...++|+.|+++++. ...           +...+...++|+.|++++|.+.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            34566777777777553221    1224556777777777662 221           1123455677777777777655


Q ss_pred             c-----ccHHhhcCCCCCEEeccCCcccCc----cchh--------hcCCCCCCcEEeccCccccccccCCCCccccCCC
Q 037847          290 G-----LPQELKALEKLRYLNLDYAFHLSI----IPHQ--------LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGA  352 (542)
Q Consensus       290 ~-----lp~~i~~l~~L~~L~l~~~~~~~~----lp~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  352 (542)
                      .     +...+...++|++|++++|.....    +...        .....+.|+.+.+.++.+..           ...
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~-----------~~~  175 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-----------GSM  175 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-----------GGH
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc-----------ccc
Confidence            4     344555677777777777632100    0000        01245567777776665421           001


Q ss_pred             cchhHhhccccCCceeeeEecc
Q 037847          353 EPLMKELLGLKHLNVLSWSFGS  374 (542)
Q Consensus       353 ~~~~~~l~~L~~L~~l~~~~~~  374 (542)
                      ......+...+.|+.++++.+.
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSC
T ss_pred             ccccchhhhhhhhccccccccc
Confidence            1223334455666666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.7e-09  Score=87.91  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             EEEeecCCcCCCC-CCCCCCCccEEEccCc-ccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCC
Q 037847          210 RISLTANGIGSLS-EIPTCPRLVTLLLDGN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSST  286 (542)
Q Consensus       210 ~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~  286 (542)
                      .++..++.....| .+..+++|+.|++.++ .++.+++..|.++++|+.|++++| .+..+ |..|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCC
Confidence            4566666665554 4678899999999876 588888888999999999999999 67776 556889999999999999


Q ss_pred             CCCcccHHhhcCCCCCEEeccCCc
Q 037847          287 DITGLPQELKALEKLRYLNLDYAF  310 (542)
Q Consensus       287 ~i~~lp~~i~~l~~L~~L~l~~~~  310 (542)
                      +++.+|..+....+|++|+|++|.
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCcccChhhhccccccccccCCCc
Confidence            999999887777789999999984

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.64  E-value=4.4e-09  Score=100.94  Aligned_cols=88  Identities=22%  Similarity=0.144  Sum_probs=61.9

Q ss_pred             hccCCCccEEEecCCCCCC----cCccccCCCCCCCEEeccCCCCCc-----------ccHHhhcCCCCCEEeccCCccc
Q 037847          248 FQSLSTLRVLSLRGNFPPS----TLPSGISGLVSLHHLDLSSTDITG-----------LPQELKALEKLRYLNLDYAFHL  312 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~i~~-----------lp~~i~~l~~L~~L~l~~~~~~  312 (542)
                      +.....|+.|+|++|....    .+-..+...++|+.++++++....           +...+...++|+.|++++|...
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            6778999999999983222    233456778999999998764432           2233567789999999998432


Q ss_pred             Cc----cchhhcCCCCCCcEEeccCccc
Q 037847          313 SI----IPHQLISCFSKLEVLRLCGCGR  336 (542)
Q Consensus       313 ~~----lp~~~~~~l~~L~~L~l~~~~~  336 (542)
                      ..    +... +...++|++|++++|.+
T Consensus       107 ~~~~~~l~~~-l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         107 PTAQEPLIDF-LSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTHHHHHHH-HHHCTTCCEEECCSSCC
T ss_pred             cccccchhhh-hcccccchheecccccc
Confidence            21    3332 45678999999998875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=7.6e-07  Score=74.58  Aligned_cols=82  Identities=23%  Similarity=0.152  Sum_probs=44.6

Q ss_pred             hccCCCccEEEecCCCCCCcCc---cccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccCccch------
Q 037847          248 FQSLSTLRVLSLRGNFPPSTLP---SGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPH------  317 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~~lp---~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~------  317 (542)
                      +..+++|++|++++| .+..++   ..+..+++|++|++++|.|+.+++ ......+|+.|++++|........      
T Consensus        61 ~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            456677777777777 444432   334456667777777776666554 122334566666666633222111      


Q ss_pred             hhcCCCCCCcEEe
Q 037847          318 QLISCFSKLEVLR  330 (542)
Q Consensus       318 ~~~~~l~~L~~L~  330 (542)
                      .++..+++|+.|+
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2244556666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.4e-06  Score=70.41  Aligned_cols=91  Identities=20%  Similarity=0.072  Sum_probs=60.8

Q ss_pred             cCCCCCCCEEeccCCCCCcc---cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccc
Q 037847          272 ISGLVSLHHLDLSSTDITGL---PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL  348 (542)
Q Consensus       272 i~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  348 (542)
                      ...+++|++|++++|.|+.+   +..+..+++|++|++++| .++.++.....+..+|++|++.+|++......      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~------  133 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRD------  133 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS------
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCccc------
Confidence            34678899999999988875   455778899999999998 66666652233445789999999887543211      


Q ss_pred             cCCCcchhHhhccccCCceeeeE
Q 037847          349 CDGAEPLMKELLGLKHLNVLSWS  371 (542)
Q Consensus       349 ~~~~~~~~~~l~~L~~L~~l~~~  371 (542)
                        .......-+..+++|+.|+-.
T Consensus       134 --~~~y~~~i~~~~P~L~~LDg~  154 (162)
T d1koha1         134 --QSTYISAIRERFPKLLRLDGH  154 (162)
T ss_dssp             --HHHHHHHHHTTSTTCCEETTE
T ss_pred             --chhHHHHHHHHCCCCCEECcC
Confidence              111223345566777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.65  E-value=0.0017  Score=53.71  Aligned_cols=116  Identities=16%  Similarity=0.138  Sum_probs=63.9

Q ss_pred             cCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCc-----
Q 037847          250 SLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSI-----  314 (542)
Q Consensus       250 ~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----  314 (542)
                      +.+.|+.|+|+++..+.     .+-..+....+|++|++++|.+..     +...+...+.|++|++++|. +..     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            34566666666542232     122345556667777777776653     34456666778888888873 331     


Q ss_pred             cchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecch
Q 037847          315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS  375 (542)
Q Consensus       315 lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~  375 (542)
                      +-.. +..-++|++|++.+|..... .       ..........+..-++|+.+++++...
T Consensus        92 l~~a-L~~n~sL~~L~l~~n~~~~~-g-------~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRS-TLVTQSIVEFKADNQRQSVL-G-------NQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHH-TTTTCCCSEEECCCCSSCCC-C-------HHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHH-HHhCCcCCEEECCCCcCCCc-c-------HHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            2222 55567788888876643210 0       000112334455567777777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.38  E-value=0.0013  Score=54.30  Aligned_cols=106  Identities=16%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             CCCCccEEEccCc-ccccc----cchhhccCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----
Q 037847          226 TCPRLVTLLLDGN-RIEEI----TDGFFQSLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG-----  290 (542)
Q Consensus       226 ~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-----  290 (542)
                      +.+.|+.|+++++ .+...    ....+...+.|++|++++| .+.     .+...+...+.|++|++++|.+..     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4466777777764 33211    1122556677888888887 332     222344456778888888887765     


Q ss_pred             ccHHhhcCCCCCEEeccCCcccCc--------cchhhcCCCCCCcEEeccCc
Q 037847          291 LPQELKALEKLRYLNLDYAFHLSI--------IPHQLISCFSKLEVLRLCGC  334 (542)
Q Consensus       291 lp~~i~~l~~L~~L~l~~~~~~~~--------lp~~~~~~l~~L~~L~l~~~  334 (542)
                      +-..+..-+.|++|+++++. ...        +... +..-++|++|++..+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~-L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMA-IEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHH-HHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHH-HHhCCCccEeeCcCC
Confidence            33456666778888888763 222        2222 445678888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.94  E-value=0.0021  Score=52.94  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=67.3

Q ss_pred             hccCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccC----
Q 037847          248 FQSLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLS----  313 (542)
Q Consensus       248 ~~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~----  313 (542)
                      ..+.+.|+.|+++++..+.     .+-..+...++|++|++++|.++.     +-..+...++++.+++++|....    
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            4456777777777643332     123345567778888888887654     33456667788888888773221    


Q ss_pred             ccchhhcCCCCCCcEEeccC--ccccccccCCCCccccCCCcchhHhhccccCCceeeeEecch
Q 037847          314 IIPHQLISCFSKLEVLRLCG--CGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS  375 (542)
Q Consensus       314 ~lp~~~~~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~  375 (542)
                      .+... +...++|+.+++..  +.+..           .........+...+.|+.|++.++..
T Consensus        93 ~l~~~-l~~~~~L~~l~L~l~~n~i~~-----------~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEA-LQSNTSLIELRIDNQSQPLGN-----------NVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHG-GGGCSSCCEEECCCCSSCCCH-----------HHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHH-HHhCccccEEeeccCCCcCcH-----------HHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            12222 55667788766643  33211           01112334455677788888776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.06  E-value=0.012  Score=48.12  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             CCCCccEEEccCc-ccccc----cchhhccCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----
Q 037847          226 TCPRLVTLLLDGN-RIEEI----TDGFFQSLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG-----  290 (542)
Q Consensus       226 ~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-----  290 (542)
                      +.+.|+.|.++++ .++..    ....+...++|+.|++++| .+.     .+-..+.....++.+++++|.+..     
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4466677777663 33211    1122456677888888877 332     122334456778888888776653     


Q ss_pred             ccHHhhcCCCCCEEeccCCc-ccC-----ccchhhcCCCCCCcEEeccCcc
Q 037847          291 LPQELKALEKLRYLNLDYAF-HLS-----IIPHQLISCFSKLEVLRLCGCG  335 (542)
Q Consensus       291 lp~~i~~l~~L~~L~l~~~~-~~~-----~lp~~~~~~l~~L~~L~l~~~~  335 (542)
                      +-..+...++|+.++++.+. .+.     .+... +.+.++|++|++..+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCC
Confidence            34556677788876665432 222     12222 5567788888876543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.73  E-value=0.64  Score=40.43  Aligned_cols=60  Identities=15%  Similarity=0.280  Sum_probs=44.3

Q ss_pred             CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhH
Q 037847            4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGD   68 (542)
Q Consensus         4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~   68 (542)
                      ..+.|++++.+++.+++.+.+-.... ..++    .++|+++++|.|.++..+|..+......+.
T Consensus       201 ~~i~L~~l~~~e~~~~l~~~~~~~~~-~~~~----~~~i~~~~~G~P~~L~~~~~~~~~~~~~~~  260 (283)
T d2fnaa2         201 STVELKPFSREEAIEFLRRGFQEADI-DFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDF  260 (283)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHTC-CCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHH
T ss_pred             eEEeeCCCCHHHHHHHHHhhhhhcCC-CHHH----HHHHHHHhCCCHHHHHHHHHHHHhcccHHH
Confidence            45789999999999999887643321 2222    469999999999999999887755444433