Citrus Sinensis ID: 037861

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
SYFAKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHNLIGAWD
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHcccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcHEEHccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccEEEccccccccccccEEEEcccccccccccHHHHHHHEEccccccccccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
syfaklpqsdvdllefplnLEYLEAEFFLFgslghgldkvapnltanlnpftndVVLQFVWQEVGHLRAIKntvkgfprplldlsagsFAKVIDKafgkplnppldpyanSINYLIASYlnpyvgltgyvganpnlqdAVSQRLAAGLLGVKSGQDAIIRTLLYQKanekvhpygipvAAFTNKISQMRNNlgrsglkdegllvpkfhgterkirgnvlagneysiafdrtPEEILRIVYggghegipggffpngangriaGSHLHNLIGAWD
Flexible Loop (DISEMBL)
syfaklpqsdvdLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLgrsglkdegllvpkfhgterkirgnvlagneysiafdRTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHNLIGAWD
Low Complexity Region (SEG)
SYFAKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRIVYggghegipggFFPNGANGRIAGSHLHNLIGAWD
Disordered region (IsUnstruct)
*********DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHNLIGA**
Disordered Region (DISOPRED)
******P***VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHNL*G***
Disordered Region (DISEMBL)
SYFAKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHNLIGAWD
Disordered Region (DISPRO)
****KLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHNLIGAWD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SYFAKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHNLIGAWD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
P22242	313	Desiccation-related prote	N/A	no	0.930	0.811	0.577	4e-84

>sp|P22242|DRPE_CRAPL Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1

 Score =  311 bits (796), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 153/265 (57%), Positives = 188/265 (70%), Gaps = 11/265 (4%)

Query: 6   LPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTND 54
           +P+SDV LLEFPLNLE LEAEFF + + G G+D++ P L            ANL+PF  D
Sbjct: 35  IPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRD 94

Query: 55  VVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINY 114
           ++ QF +QE GH+RAI+++V+GFPRPLLDLSA SFA V+D AFGK L PP DPYAN INY
Sbjct: 95  IIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINY 154

Query: 115 LIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPY 174
           L+A Y+ PYVGLTGYVGANP L+  VS++L AGLL V++GQDAIIR LLY++A +KV PY
Sbjct: 155 LLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPY 214

Query: 175 GIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEE 234
           GI VA FTNKIS++RN LG  G+KD GL+V    G E KI GNVLAG++ S+AF RTPE 
Sbjct: 215 GITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPER 274

Query: 235 ILRIVYGGGHEGIPGGFFPNGANGR 259
            L           P  F P    G+
Sbjct: 275 CLGSCTAAAMRPSPAAFIPKAPTGK 299

Craterostigma plantagineum (taxid: 4153)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
224099099	313	predicted protein [Populus trichocarpa]	0.959	0.837	0.692	1e-106
255556470	311	conserved hypothetical protein [Ricinus	0.967	0.848	0.672	1e-102
296083215	474	unnamed protein product [Vitis vinifera]	0.978	0.563	0.672	1e-102
449462134	310	PREDICTED: desiccation-related protein P	0.959	0.845	0.677	1e-102
359477103	303	PREDICTED: desiccation-related protein P	0.978	0.881	0.672	1e-102
297852412	315	hypothetical protein ARALYDRAFT_891606 [	0.941	0.815	0.686	1e-101
21593191	315	dessication-related protein, putative [A	0.941	0.815	0.686	1e-101
18401988	315	uncharacterized protein [Arabidopsis tha	0.941	0.815	0.686	1e-101
12323093	302	dessication-related protein, putative; 7	0.941	0.850	0.686	1e-100
356529093	313	PREDICTED: desiccation-related protein P	0.967	0.843	0.661	1e-99

>gi|224099099|ref|XP_002311374.1| predicted protein [Populus trichocarpa] gi|222851194|gb|EEE88741.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/273 (69%), Positives = 223/273 (81%), Gaps = 11/273 (4%)

Query: 6   LPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTND 54
           +PQSD+DLLEFPLNLEYLEAEFFL+GS+G GLD  APNLT           ANL+P+T D
Sbjct: 40  IPQSDIDLLEFPLNLEYLEAEFFLYGSMGQGLDNFAPNLTMGGPKPLGAKKANLDPYTRD 99

Query: 55  VVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINY 114
           V+ QF WQEVGHLRAIK+TV+GFPRPLLDLS  SFAK +D AFGK L+PP DPYA+S++Y
Sbjct: 100 VIKQFAWQEVGHLRAIKDTVQGFPRPLLDLSTKSFAKTMDAAFGKRLSPPFDPYASSLHY 159

Query: 115 LIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPY 174
           LIASY+ PYVGLTGYVGANP LQ A S+RL AGLL V+SGQDA+IR LLY+ A  ++HPY
Sbjct: 160 LIASYVIPYVGLTGYVGANPKLQAAASKRLVAGLLAVESGQDAVIRGLLYEYALIRLHPY 219

Query: 175 GIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEE 234
           GI VA FTN+IS +RN LG+ G+KDEGL+VPK  G E +IRGNVLAG+EYSI + RTPEE
Sbjct: 220 GITVAEFTNRISDLRNKLGQEGIKDEGLVVPKKFGAEGQIRGNVLAGDEYSIGYARTPEE 279

Query: 235 ILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHN 267
           ILR+VYG G+E  PGGF+P GA+GRIA SHL +
Sbjct: 280 ILRVVYGSGNESTPGGFYPKGADGRIAKSHLQH 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556470|ref|XP_002519269.1| conserved hypothetical protein [Ricinus communis] gi|223541584|gb|EEF43133.1| conserved hypothetical protein [Ricinus communis]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/275 (67%), Positives = 221/275 (80%), Gaps = 11/275 (4%)

Query: 4   AKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFT 52
           + +P  DVDLLEFP+NLEYLEAEFFL+GSLG GLD  APNLT           A L+PFT
Sbjct: 35  SSIPDGDVDLLEFPINLEYLEAEFFLYGSLGDGLDVFAPNLTSGGPPPIGATKAKLDPFT 94

Query: 53  NDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSI 112
            DV+ QF WQEVGHLRAIKN VKGFPRPLLDL A +FAKVID AFG+PL PP DPYA S+
Sbjct: 95  RDVIRQFAWQEVGHLRAIKNVVKGFPRPLLDLRAETFAKVIDDAFGQPLFPPFDPYACSL 154

Query: 113 NYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVH 172
           N+LIASY+ PYVGLTGYVGANP L  ++S++L AGLL V+SGQDA+IRTLLY++A EKV+
Sbjct: 155 NFLIASYIVPYVGLTGYVGANPKLSASISKQLVAGLLAVESGQDAVIRTLLYERAIEKVY 214

Query: 173 PYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTP 232
           PY I VA FT++IS++RN LG +G KDEG++V K  G E ++RGNVLAG+EYS+ + RTP
Sbjct: 215 PYKITVAEFTDRISELRNKLGNNGNKDEGIIVAKERGAEGQVRGNVLAGDEYSVGYPRTP 274

Query: 233 EEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHN 267
           EEILRIVYGGG E +PGGF+P GA+GRIA S+L  
Sbjct: 275 EEILRIVYGGGDEHVPGGFYPKGADGRIAKSYLRK 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083215|emb|CBI22851.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/278 (67%), Positives = 221/278 (79%), Gaps = 11/278 (3%)

Query: 1   SYFAKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLN 49
           SY   +P+SD+DL+EFPLNLE+LEAEFFL+GS G+GLD VA NL+           A L+
Sbjct: 22  SYGGSVPESDIDLVEFPLNLEFLEAEFFLWGSQGYGLDTVAANLSKGGPPPVGARKATLD 81

Query: 50  PFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYA 109
           PF  DV+ QF  QE+GHLRAI++ VKGFPRPLL+LSA SFA V++ AFGKPLNPP DPYA
Sbjct: 82  PFIRDVIYQFALQEIGHLRAIQSKVKGFPRPLLNLSAASFADVMNSAFGKPLNPPFDPYA 141

Query: 110 NSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANE 169
           N +N+L+ASY+ PYVGLTGYVG NPNLQ A S+RL AGLLGV+SGQDA+IR LLY+KA  
Sbjct: 142 NGLNFLLASYVIPYVGLTGYVGTNPNLQGAASKRLVAGLLGVESGQDAVIRALLYRKAAA 201

Query: 170 KVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFD 229
           KVHPYGI VA FT +IS +RNNLG+SGLKDEGL+VP   G E K RGNVLAG+++S+A+ 
Sbjct: 202 KVHPYGITVADFTYRISNLRNNLGKSGLKDEGLVVPPVRGAEGKSRGNVLAGDKFSLAYA 261

Query: 230 RTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHN 267
           R PEEILRIVYGGG E  PGGF+P GANGRIA S L  
Sbjct: 262 RKPEEILRIVYGGGSERNPGGFYPQGANGRIARSFLQK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462134|ref|XP_004148796.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus] gi|449511873|ref|XP_004164077.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/273 (67%), Positives = 222/273 (81%), Gaps = 11/273 (4%)

Query: 6   LPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTND 54
           +PQ D DLLEFPLNLEYLEAEFFL+GSLG+GLDKVAPNLT           A L+PF  D
Sbjct: 37  IPQGDADLLEFPLNLEYLEAEFFLYGSLGYGLDKVAPNLTMGGPPPIGAKRAKLDPFIRD 96

Query: 55  VVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINY 114
           ++LQF +QEVGHLRAIK TVKGFPRPLLDLS+ SFAKV+DKAFG+ L P  DPYAN +N+
Sbjct: 97  IILQFGYQEVGHLRAIKTTVKGFPRPLLDLSSASFAKVMDKAFGRQLKPHFDPYANGLNF 156

Query: 115 LIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPY 174
           L+ASYL PYVGLTGYVGANP L+ AV+++L AGLLGV+SGQDA+IR LLYQ+A EKV PY
Sbjct: 157 LLASYLVPYVGLTGYVGANPRLESAVAKKLVAGLLGVESGQDAVIRALLYQRAAEKVEPY 216

Query: 175 GIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEE 234
           G+ VA FT++IS +RN LG +G+KDEG +VPK  G E KI GNVLAG++ S+A+ RTP+E
Sbjct: 217 GVTVAEFTDRISDLRNKLGHAGIKDEGTVVPKNEGAEGKITGNVLAGDQDSLAYPRTPQE 276

Query: 235 ILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHN 267
           ILRIVYGGG+E  PGGF+P GA+G IA S  ++
Sbjct: 277 ILRIVYGGGNEHAPGGFYPKGADGHIAKSMAYS 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477103|ref|XP_002273659.2| PREDICTED: desiccation-related protein PCC13-62-like [Vitis vinifera]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/278 (67%), Positives = 221/278 (79%), Gaps = 11/278 (3%)

Query: 1   SYFAKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLN 49
           SY   +P+SD+DL+EFPLNLE+LEAEFFL+GS G+GLD VA NL+           A L+
Sbjct: 22  SYGGSVPESDIDLVEFPLNLEFLEAEFFLWGSQGYGLDTVAANLSKGGPPPVGARKATLD 81

Query: 50  PFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYA 109
           PF  DV+ QF  QE+GHLRAI++ VKGFPRPLL+LSA SFA V++ AFGKPLNPP DPYA
Sbjct: 82  PFIRDVIYQFALQEIGHLRAIQSKVKGFPRPLLNLSAASFADVMNSAFGKPLNPPFDPYA 141

Query: 110 NSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANE 169
           N +N+L+ASY+ PYVGLTGYVG NPNLQ A S+RL AGLLGV+SGQDA+IR LLY+KA  
Sbjct: 142 NGLNFLLASYVIPYVGLTGYVGTNPNLQGAASKRLVAGLLGVESGQDAVIRALLYRKAAA 201

Query: 170 KVHPYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFD 229
           KVHPYGI VA FT +IS +RNNLG+SGLKDEGL+VP   G E K RGNVLAG+++S+A+ 
Sbjct: 202 KVHPYGITVADFTYRISNLRNNLGKSGLKDEGLVVPPVRGAEGKSRGNVLAGDKFSLAYA 261

Query: 230 RTPEEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHN 267
           R PEEILRIVYGGG E  PGGF+P GANGRIA S L  
Sbjct: 262 RKPEEILRIVYGGGSERNPGGFYPQGANGRIARSFLQK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852412|ref|XP_002894087.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata] gi|297339929|gb|EFH70346.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 215/268 (80%), Gaps = 11/268 (4%)

Query: 9   SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTNDVVL 57
            D  LLEFPLNLEYLEAEFFLFG+LG GLDKVAPNLT           ANL+P T D++L
Sbjct: 42  QDRKLLEFPLNLEYLEAEFFLFGALGFGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIIL 101

Query: 58  QFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIA 117
           QF WQEVGHLRAIK TVKGF RP LDLS  +FAKV+DKAFG    PP +PYANS NYLIA
Sbjct: 102 QFAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIA 161

Query: 118 SYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIP 177
           SYL PYVGLTGYVGANP LQ   S++L AGLLGV+SGQDA+IR +LY +A   V+PYG+ 
Sbjct: 162 SYLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVT 221

Query: 178 VAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILR 237
           VAAFT+KIS +RN LG++G+KDEGL+VPKF G E ++ GNVL GNE+S++FDRTPEEILR
Sbjct: 222 VAAFTDKISDLRNKLGKAGVKDEGLVVPKFMGAEGQVIGNVLVGNEFSLSFDRTPEEILR 281

Query: 238 IVYGGGHEGIPGGFFPNGANGRIAGSHL 265
           IVYG G+E +PGGF+P GA+G IA S+L
Sbjct: 282 IVYGSGNESVPGGFYPKGADGEIAKSYL 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593191|gb|AAM65140.1| dessication-related protein, putative [Arabidopsis thaliana]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 214/268 (79%), Gaps = 11/268 (4%)

Query: 9   SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTNDVVL 57
            D  LLEFPLNLEYLEAEFFLFG+LG GLDKVAPNLT           ANL+P T D++L
Sbjct: 42  QDRKLLEFPLNLEYLEAEFFLFGALGFGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIIL 101

Query: 58  QFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIA 117
           QF WQEVGHLRAIK TVKGF RP LDLS  +FAKV+DKAFG    PP +PYANS NYLIA
Sbjct: 102 QFAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIA 161

Query: 118 SYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIP 177
           SYL PYVGLTGYVGANP LQ   S++L AGLLGV+SGQDA+IR +LY +A   V+PYG+ 
Sbjct: 162 SYLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVT 221

Query: 178 VAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILR 237
           VAAFT+KIS +RN LG++G+KDEGL+VPKF G E ++ GNVL GNE S++FDRTPEEILR
Sbjct: 222 VAAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILR 281

Query: 238 IVYGGGHEGIPGGFFPNGANGRIAGSHL 265
           IVYG G+E +PGGF+P GA+G IA S+L
Sbjct: 282 IVYGSGNESVPGGFYPKGADGEIAKSYL 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401988|ref|NP_564518.1| uncharacterized protein [Arabidopsis thaliana] gi|332194113|gb|AEE32234.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 214/268 (79%), Gaps = 11/268 (4%)

Query: 9   SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTNDVVL 57
            D  LLEFPLNLEYLEAEFFLFG+LG GLDKVAPNLT           ANL+P T D++L
Sbjct: 42  QDRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIIL 101

Query: 58  QFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIA 117
           QF WQEVGHLRAIK TVKGF RP LDLS  +FAKV+DKAFG    PP +PYANS NYLIA
Sbjct: 102 QFAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIA 161

Query: 118 SYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIP 177
           SYL PYVGLTGYVGANP LQ   S++L AGLLGV+SGQDA+IR +LY +A   V+PYG+ 
Sbjct: 162 SYLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVT 221

Query: 178 VAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILR 237
           VAAFT+KIS +RN LG++G+KDEGL+VPKF G E ++ GNVL GNE S++FDRTPEEILR
Sbjct: 222 VAAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILR 281

Query: 238 IVYGGGHEGIPGGFFPNGANGRIAGSHL 265
           IVYG G+E +PGGF+P GA+G IA S+L
Sbjct: 282 IVYGSGNESVPGGFYPKGADGEIAKSYL 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323093|gb|AAG51530.1|AC051631_10 dessication-related protein, putative; 70055-71849 [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 214/268 (79%), Gaps = 11/268 (4%)

Query: 9   SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTNDVVL 57
            D  LLEFPLNLEYLEAEFFLFG+LG GLDKVAPNLT           ANL+P T D++L
Sbjct: 29  QDRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIIL 88

Query: 58  QFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIA 117
           QF WQEVGHLRAIK TVKGF RP LDLS  +FAKV+DKAFG    PP +PYANS NYLIA
Sbjct: 89  QFAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIA 148

Query: 118 SYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIP 177
           SYL PYVGLTGYVGANP LQ   S++L AGLLGV+SGQDA+IR +LY +A   V+PYG+ 
Sbjct: 149 SYLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVT 208

Query: 178 VAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILR 237
           VAAFT+KIS +RN LG++G+KDEGL+VPKF G E ++ GNVL GNE S++FDRTPEEILR
Sbjct: 209 VAAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILR 268

Query: 238 IVYGGGHEGIPGGFFPNGANGRIAGSHL 265
           IVYG G+E +PGGF+P GA+G IA S+L
Sbjct: 269 IVYGSGNESVPGGFYPKGADGEIAKSYL 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529093|ref|XP_003533131.1| PREDICTED: desiccation-related protein PCC13-62-like [Glycine max]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/275 (66%), Positives = 218/275 (79%), Gaps = 11/275 (4%)

Query: 4   AKLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFT 52
           A  P+SDVDLLEFPLNLEYLEAEFFLFGSLG+GLD VAPNLT           A L+   
Sbjct: 38  AAAPESDVDLLEFPLNLEYLEAEFFLFGSLGYGLDVVAPNLTEGGPPPIGARLARLDSLV 97

Query: 53  NDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSI 112
            D++LQF +QEVGHLRAIK+TV+GFPRPLLDLS  SFAKV++ AFG+PL PP DPYANSI
Sbjct: 98  RDIILQFGFQEVGHLRAIKSTVRGFPRPLLDLSTASFAKVMNSAFGRPLVPPFDPYANSI 157

Query: 113 NYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVH 172
           NYL+ASY+ PYVGLTGYVGANP LQ+A S+RL AGLLGV+SGQDA+IR LLY+     V 
Sbjct: 158 NYLLASYVIPYVGLTGYVGANPLLQNATSKRLVAGLLGVESGQDAVIRALLYEYRTLSVQ 217

Query: 173 PYGIPVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTP 232
           PY + VA FTN+IS +RNNLG SGLKDEGL+VP+  G E ++ GN+L G++ S+++ RTP
Sbjct: 218 PYNVTVAEFTNRISMLRNNLGGSGLKDEGLVVPREQGAEGRVTGNILVGDKDSLSYPRTP 277

Query: 233 EEILRIVYGGGHEGIPGGFFPNGANGRIAGSHLHN 267
            EILRI+YGGG E +PGGF+P GA+GRIA  +L  
Sbjct: 278 REILRIIYGGGDEHVPGGFYPKGASGRIAKYYLKT 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2202593	315	AT1G47980 "AT1G47980" [Arabido	0.937	0.812	0.666	5.9e-89
TAIR|locus:2081645	317	AT3G62730 "AT3G62730" [Arabido	0.926	0.798	0.516	1.2e-65

TAIR|locus:2202593 AT1G47980 "AT1G47980" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 178/267 (66%), Positives = 206/267 (77%)

Query:    10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTNDVVLQ 58
             D  LLEFPLNLEYLEAEFFLFG+LG GLDKVAPNLT           ANL+P T D++LQ
Sbjct:    43 DRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIILQ 102

Query:    59 FVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIAS 118
             F WQEVGHLRAIK TVKGF RP LDLS  +FAKV+DKAFG    PP +PYANS NYLIAS
Sbjct:   103 FAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIAS 162

Query:   119 YLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPV 178
             YL PYVGLTGYVGANP LQ   S++L AGLLGV+SGQDA+IR +LY +A   V+PYG+ V
Sbjct:   163 YLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTV 222

Query:   179 AAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEILRI 238
             AAFT+KIS +RN LG++G+KDEGL+VPKF G E ++ GNVL GNE S++FDRTPEEILRI
Sbjct:   223 AAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILRI 282

Query:   239 VYXXXXXXXXXXFFPNGANGRIAGSHL 265
             VY          F+P GA+G IA S+L
Sbjct:   283 VYGSGNESVPGGFYPKGADGEIAKSYL 309

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081645 AT3G62730 "AT3G62730" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 137/265 (51%), Positives = 179/265 (67%)

Query:     9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLT-----------ANLNPFTNDVVL 57
             SDVD + F +NLE+ EAEFFL G+ G GLD     L            ANL+P TN ++ 
Sbjct:    33 SDVDRVHFAMNLEFTEAEFFLKGATGKGLDAYNATLAKGGPPPIGAKKANLDPITNRIIE 92

Query:    58 QFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIA 117
             +F +QE+GHLRAI +   G PRPL++L+  +FA  +D+A G+  NP  DPYANS+NYL+A
Sbjct:    93 EFGYQEIGHLRAITDMTGGIPRPLINLTRENFAVFMDRAVGRKSNPRFDPYANSLNYLLA 152

Query:   118 SYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYG-I 176
             SY  PYVGLTGYVG  P L     ++L AGLLGV+SGQDA+IRTLLY++ NEKV  YG +
Sbjct:   153 SYYIPYVGLTGYVGTIPYLVYFNIKKLVAGLLGVESGQDAVIRTLLYERQNEKVEEYGGV 212

Query:   177 PVAAFTNKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYSIAFDRTPEEIL 236
              VA  TN+IS +RN LG  G+KDEGL VP + G E +   N+L+ + YS+++DRT +EIL
Sbjct:   213 TVAELTNEISNLRNELGMCGIKDEGLCVPLWLGAENRTTSNILSADPYSLSYDRTAQEIL 272

Query:   237 RIVYXXXXXXXXXXFFPNGANGRIA 261
             R++Y          F+P GANGRIA
Sbjct:   273 RVMYGTGDEHRPGGFWPCGANGRIA 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.140   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       263   0.00091  114 3  11 22  0.48    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  176 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.09u 0.16s 23.25t   Elapsed:  00:00:01
  Total cpu time:  23.09u 0.16s 23.25t   Elapsed:  00:00:01
  Start:  Fri May 10 03:47:19 2013   End:  Fri May 10 03:47:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22242	DRPE_CRAPL	No assigned EC number	0.5773	0.9304	0.8115	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam13668	137	pfam13668, Ferritin_2, Ferritin-like domain	3e-41

>gnl|CDD|222304 pfam13668, Ferritin_2, Ferritin-like domain

 Score =  138 bits (350), Expect = 3e-41
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 24/159 (15%)

Query: 9   SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLR 68
           SDVD+L F L LEYLEA F+L    G GLD  A    A L+     +  +    EV H+R
Sbjct: 1   SDVDILNFALTLEYLEAAFYLQALAGFGLDDFAK---AGLDAAVRALAEEIADHEVAHVR 57

Query: 69  AIKNTV--KGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGL 126
            +K  +     PRP  D                      DP+ + +++L  +Y+   VG+
Sbjct: 58  FLKAALGGAPVPRPTFDFPF-------------------DPFTDRLSFLALAYVLEDVGV 98

Query: 127 TGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ 165
           + Y+GA P L +      AA +LGV++   A+IRTLL +
Sbjct: 99  SAYLGAAPLLSNKDYLAAAASILGVEARHAAVIRTLLGE 137

This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PF13668	137	Ferritin_2: Ferritin-like domain	100.0
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	98.56
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	98.46
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	97.82
cd01048	135	Ferritin_like_AB2 Uncharacterized family of ferrit	97.73
COG1633	176	Uncharacterized conserved protein [Function unknow	97.11
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	97.01
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.92
PRK13456	186	DNA protection protein DPS; Provisional	96.78
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	96.53
cd01052	148	DPSL DPS-like protein, ferritin-like diiron-bindin	96.18
cd00907	153	Bacterioferritin Bacterioferritin, ferritin-like d	96.02
PF13668	137	Ferritin_2: Ferritin-like domain	94.86
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	94.03
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	93.91
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	93.68
PRK10635	158	bacterioferritin; Provisional	92.56
TIGR02284	139	conserved hypothetical protein. Members of this pr	92.23
cd01041	134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	89.92
PF14530	131	DUF4439: Domain of unknown function (DUF4439); PDB	89.56
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	88.72
PF09968	162	DUF2202: Uncharacterized protein domain (DUF2202);	88.58
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	88.13
TIGR00754	157	bfr bacterioferritin. Bacterioferritin is a homomu	85.22
PF00210	142	Ferritin: Ferritin-like domain; InterPro: IPR00833	83.51
cd01046	123	Rubrerythrin_like rubrerythrin-like, diiron-bindin	82.92
cd01055	156	Nonheme_Ferritin nonheme-containing ferritins. Non	82.76
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	81.82

>PF13668 Ferritin_2: Ferritin-like domain

Probab=100.00  E-value=2.1e-33  Score=231.73  Aligned_cols=134  Identities=37%  Similarity=0.634  Sum_probs=125.2

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh-c--CCCCCcccCC
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV-K--GFPRPLLDLS   85 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL-g--a~~~P~id~s   85 (273)
                      +|++||||||+|||||.+||.+++.+.+++. .   ...+++.+++++++|+.||..|+++|+++| |  ++++|.||+ 
T Consensus         1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~---~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~~~~~~~~~~~-   75 (137)
T PF13668_consen    1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N---KAALDPEVRDLFQEIADQEQGHVDFLQAALEGGRPVPPPAYDF-   75 (137)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h---hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccc-
Confidence            6999999999999999999999998887654 2   156899999999999999999999999999 6  778999987 


Q ss_pred             cchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           86 AGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        86 ~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                        +||||+|+.+||..|+.||++|+++|+|++++++|+++++++++|++||++|++|||++|+|
T Consensus        76 ------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~~  137 (137)
T PF13668_consen   76 ------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEARHAAWIRNLLGQ  137 (137)
T ss_pred             ------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                              38999999999999999999999999999999999999999999999999999999999985

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=98.56  E-value=5.5e-07  Score=71.79  Aligned_cols=134  Identities=15%  Similarity=0.194  Sum_probs=103.8

Q ss_pred             hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCC---CCCcccCCcch
Q 037861           12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGF---PRPLLDLSAGS   88 (273)
Q Consensus        12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~---~~P~id~s~~~   88 (273)
                      +|||.|+.+|.....||...+.-.            -++.++.+++.++.+|..|...|...++..   +-|.....  .
T Consensus         1 ~~l~~a~~~E~~~~~~Y~~~a~~~------------~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~--~   66 (139)
T cd01045           1 EILALAIKMEEEAAEFYLELAEKA------------KDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPE--D   66 (139)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHH--H
Confidence            589999999999999999985321            356899999999999999999999998722   44544432  1


Q ss_pred             HHHHHHHhcCCCCC-CCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861           89 FAKVIDKAFGKPLN-PPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTL  162 (273)
Q Consensus        89 F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~l  162 (273)
                      +....   .+.... ..+.+-.+....|..+.-+|..++.-|.-.+..+.++..+.+...|...|.+|...+|.+
T Consensus        67 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~~~l~~~  138 (139)
T cd01045          67 YKEEV---EEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHLRLLEEL  138 (139)
T ss_pred             HHHHH---hhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11110   010000 011234678889999999999999999999999999999999999999999999999975

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=98.46  E-value=3.9e-06  Score=63.79  Aligned_cols=129  Identities=19%  Similarity=0.117  Sum_probs=100.1

Q ss_pred             hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchHH
Q 037861           12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSFA   90 (273)
Q Consensus        12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F~   90 (273)
                      .+||-++..|+....+|...+...            -++.++.++.+++.+|..|...|.+.+. -...|.....  .+.
T Consensus         1 ~~L~~~~~~E~~a~~~y~~~~~~~------------~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~--~~~   66 (130)
T cd00657           1 RLLNDALAGEYAAIIAYGQLAARA------------PDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPA--HLL   66 (130)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH--HHH
Confidence            368999999999999999885321            2688999999999999999999999876 1122222211  000


Q ss_pred             HHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861           91 KVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLL  163 (273)
Q Consensus        91 ~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL  163 (273)
                          .. .    ++..+..+....|..+...|..++..|...+..+.+++++.....|...|.+|...++.++
T Consensus        67 ----~~-~----~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~~~~~  130 (130)
T cd00657          67 ----AA-Y----ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWFRKLL  130 (130)
T ss_pred             ----Hh-c----ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                01 1    1223346777888999999999999999999999999999999999999999999988653

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=97.82  E-value=0.00012  Score=58.38  Aligned_cols=127  Identities=14%  Similarity=0.149  Sum_probs=98.2

Q ss_pred             hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC--CCcccCCcch
Q 037861           12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFP--RPLLDLSAGS   88 (273)
Q Consensus        12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~--~P~id~s~~~   88 (273)
                      ++|+.|+..|.-...||...+....          .-.|.++.++.+++.+|..|.++|.+.+. -.+  .|.+.-.   
T Consensus         1 e~L~~A~~~E~~~~~~Y~~~a~~~~----------~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~---   67 (137)
T PF02915_consen    1 EILEMAIKMELEAAKFYRELAEKAK----------DEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEE---   67 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----------HTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCC---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhh----------hcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhh---
Confidence            6899999999999999998853210          01178999999999999999999999988 222  2321100   


Q ss_pred             HHHHHHHhcCCCCCCCCCC------CCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861           89 FAKVIDKAFGKPLNPPLDP------YANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTL  162 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdP------y~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~l  162 (273)
                                 ...+.+.+      -.|....+..+...|.-++.-|.-.+..+.++..++..-.|...|.+|...++.+
T Consensus        68 -----------~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l  136 (137)
T PF02915_consen   68 -----------KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKEEKEHEDLLEKL  136 (137)
T ss_dssp             -----------CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                       01111222      1246778888999999999999999999999999999999999999999998865

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=97.73  E-value=0.00017  Score=60.39  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~   88 (273)
                      .++|.||+..|++..+||...+-.+|               .+.++..|+..|+.|..+|+..+.  .+|.|..+...+.
T Consensus         2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~---------------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~   66 (135)
T cd01048           2 IAALLYALEEEKLARDVYLALYEKFG---------------GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGV   66 (135)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccc
Confidence            57899999999999999998853321               456789999999999999999998  8888877765444


Q ss_pred             HHHHH-HHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhH
Q 037861           89 FAKVI-DKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQD  156 (273)
Q Consensus        89 F~~~~-~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Ha  156 (273)
                      |...- +...       -..-.+..+-|..+..+|...+.=|.-++...+|++++.+--.+...|-.|-
T Consensus        67 f~~~~~~~l~-------~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~  128 (135)
T cd01048          67 FTNPQYNQLV-------EQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHH  128 (135)
T ss_pred             ccchhHHHHH-------HhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            43110 0000       0123577888999999999999999999999999999999988888888875

Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.

>COG1633 Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.0098  Score=52.35  Aligned_cols=143  Identities=13%  Similarity=0.092  Sum_probs=104.8

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcc
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAG   87 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~   87 (273)
                      +-.++|++|+..|.=.-.||.+.+--            .-++.++.++.+|+.+|..|.+-+++.+. -.|+|.-.....
T Consensus        24 ~~~e~L~~Ai~~E~eA~~fY~~lae~------------~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~   91 (176)
T COG1633          24 SIEELLAIAIRGELEAIKFYEELAER------------IEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEE   91 (176)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence            55799999999999999999998521            23679999999999999999999999887 444542221110


Q ss_pred             hHHHHHHHhcCCCCCC--CCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           88 SFAKVIDKAFGKPLNP--PLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        88 ~F~~~~~~A~g~~l~p--~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                      .+.   .........|  .++.=.|...-+..|.--|--.+--|...+-.+.|.+.+++.-.|...|=+|...++..+..
T Consensus        92 ~~~---~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~  168 (176)
T COG1633          92 GEI---ESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIADDEKGHASGLLSLYNR  168 (176)
T ss_pred             cch---hhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000   0000111111  23333444455566777799999999999999999999999999999999999999987765


Q ss_pred             h
Q 037861          166 K  166 (273)
Q Consensus       166 ~  166 (273)
                      .
T Consensus       169 ~  169 (176)
T COG1633         169 L  169 (176)
T ss_pred             H
Confidence            4

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=97.01  E-value=0.0073  Score=50.79  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---CCCCCcccCCcchHHHHHHHh
Q 037861           20 LEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK---GFPRPLLDLSAGSFAKVIDKA   96 (273)
Q Consensus        20 LEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a~~~P~id~s~~~F~~~~~~A   96 (273)
                      -|+-....|.+-....          ..-++.+++++.+++.+|..|...|...++   +.|...-.. ...|       
T Consensus        27 ~E~~ai~~Y~y~~~~~----------~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~-~~~~-------   88 (154)
T cd07908          27 SELTAISQYIYQHLIS----------EEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSS-SDKF-------   88 (154)
T ss_pred             hHHHHHHHHHHHHHHc----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhc-cccC-------
Confidence            5666666666654321          113689999999999999999999998865   433311110 0000       


Q ss_pred             cCCCCCC-CCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861           97 FGKPLNP-PLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLL  163 (273)
Q Consensus        97 ~g~~l~p-~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL  163 (273)
                        ....+ .+.+-.+....|..+..+|.-++.-|..++..+.|++.+.+.-.|+.-|-.|..++..+|
T Consensus        89 --~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l  154 (154)
T cd07908          89 --TYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL  154 (154)
T ss_pred             --CcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence              00111 112234677799999999999999999999999999999999999999999999987764

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.92  E-value=0.011  Score=64.03  Aligned_cols=141  Identities=11%  Similarity=0.108  Sum_probs=109.7

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA   86 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~   86 (273)
                      .++.+||.+|+.+|-=--+||...+-.            --++.+++++.++|..|..|.+.|++.+. ..|.+.-++. 
T Consensus       859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~------------a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~-  925 (1006)
T PRK12775        859 AAALEAIRTAFEIELGGMAFYARAAKE------------TSDPVLKELFLKFAGMEQEHMATLARRYHAAAPSPTEGFK-  925 (1006)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccc-
Confidence            467899999999999999999999632            14789999999999999999999988876 3333322221 


Q ss_pred             chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHH-HHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           87 GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAV-SQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        87 ~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~-~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                       .+.    ...-..+   +.+..++.+.|..|.-+|.=.+.=|..++-...|++ .+++.-.|..-|-.|-..+..++.+
T Consensus       926 -~~~----~~~~~~~---~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~  997 (1006)
T PRK12775        926 -IER----AAIMAGV---KGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEEREHVALLTTEFER  997 (1006)
T ss_pred             -cch----hhhhhhh---ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000    0000011   122356788999999999999999999999999986 6999999999999999999999888


Q ss_pred             hhcc
Q 037861          166 KANE  169 (273)
Q Consensus       166 ~~~~  169 (273)
                      .++-
T Consensus       998 ~~~~ 1001 (1006)
T PRK12775        998 WKQG 1001 (1006)
T ss_pred             Hhcc
Confidence            7654

>PRK13456 DNA protection protein DPS; Provisional

Probab=96.78  E-value=0.015  Score=51.85  Aligned_cols=135  Identities=17%  Similarity=0.119  Sum_probs=99.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccC-CCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh---cCCC--CC--cc
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLG-HGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV---KGFP--RP--LL   82 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G-~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL---ga~~--~P--~i   82 (273)
                      +++||=||.-|++-.=.|....+- .|+          ..+.+...+++-+.+|..|...|-.-|   |+.|  .|  .+
T Consensus        22 i~lLn~AlA~E~~a~~~Y~~~a~~~~G~----------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~   91 (186)
T PRK13456         22 VELLVKNAAAEFTTYYYYTILRAHLIGL----------EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFH   91 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHh
Confidence            789999999999887777665432 222          347888999999999999999998664   4433  12  23


Q ss_pred             cCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCC--CHHHHHHHHhHHHhhhhhHHHHH
Q 037861           83 DLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQ--DAVSQRLAAGLLGVKSGQDAIIR  160 (273)
Q Consensus        83 d~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~--~~~~l~~AA~Il~VEA~Haa~IR  160 (273)
                      +++..++.           .+|=| -+|...+|...-.=|...+..|.=....+.  |+....++-.||+.|-.|..++.
T Consensus        92 ~ls~~~~~-----------~~p~d-~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~  159 (186)
T PRK13456         92 DISACPDA-----------YLPEN-PTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFS  159 (186)
T ss_pred             hhhcCccc-----------cCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence            44333221           11222 246788999988889999999997777765  55578999999999999999999


Q ss_pred             HHHHhhh
Q 037861          161 TLLYQKA  167 (273)
Q Consensus       161 ~lL~~~~  167 (273)
                      .+|..++
T Consensus       160 ~lL~~~~  166 (186)
T PRK13456        160 ELLGGGP  166 (186)
T ss_pred             HHHhcCC
Confidence            9998754

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=96.53  E-value=0.057  Score=44.13  Aligned_cols=121  Identities=17%  Similarity=0.128  Sum_probs=85.6

Q ss_pred             hhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcchHH
Q 037861           13 LLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGSFA   90 (273)
Q Consensus        13 iLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~F~   90 (273)
                      .||=.+..|.-...||...+.-            .-++.++.++.+++.+|..|..++++.++  +.+.|.-++. ..|.
T Consensus         2 ~~~~~~~~E~~~~~~Y~~la~~------------~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~-~~~~   68 (125)
T cd01044           2 RLRKFQKDEITEAAIYRKLAKR------------EKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLK-IFFY   68 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHH-HHHH
Confidence            4667889999999999988521            24678999999999999999999999988  3333300111 1122


Q ss_pred             HHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861           91 KVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLY  164 (273)
Q Consensus        91 ~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~  164 (273)
                      ......+            +....+..+.-.|.-++.-|......      +.....|..-|-.|-..++.++.
T Consensus        69 ~~l~~~~------------g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L~~~~~  124 (125)
T cd01044          69 KLLARIF------------GPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVLIALLD  124 (125)
T ss_pred             HHHHHHH------------hHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHHHHhhh
Confidence            2221111            22345566667899999999987655      55667899999999999988764

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain

Probab=96.18  E-value=0.14  Score=42.24  Aligned_cols=138  Identities=13%  Similarity=0.100  Sum_probs=96.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-+|+.|+.-...|..-..-  +..      .+ -..+...+++++.+|..|+..|-.-+. =..+|.....  .|
T Consensus         8 ~~~Ln~~la~e~~~~~~y~~~~~~--~~g------~~-f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~--~~   76 (148)
T cd01052           8 IELLNKAFADEWLAYYYYTILAKH--VKG------PE-GEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPK--DW   76 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HcC------Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChH--HH
Confidence            467999999999877777654321  000      11 156889999999999999999987765 2224544332  22


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC--CCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL--QDAVSQRLAAGLLGVKSGQDAIIRTLL  163 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l--~~~~~l~~AA~Il~VEA~Haa~IR~lL  163 (273)
                      ...    .+..+..+-.-..+....+.....-|...+..|.......  .|.......-.|+.-|-.|..+++++|
T Consensus        77 ~~~----~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~~~~~~~~  148 (148)
T cd01052          77 YEI----SGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHEEDLEELL  148 (148)
T ss_pred             HHH----hcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            211    1111111111245778899999999999999999988765  677778889999999999999999875

DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical

>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain

Probab=96.02  E-value=0.23  Score=41.12  Aligned_cols=127  Identities=14%  Similarity=0.036  Sum_probs=95.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHhccc---CCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSL---GHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA   86 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~---G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~   86 (273)
                      ++.||-+++.||--...|.+...   |.+            -+.+...+.+++.+|..|...|-.-+. -..+|.+.-. 
T Consensus         7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~------------~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~-   73 (153)
T cd00907           7 IEALNKALTGELTAINQYFLHARMLEDWG------------LEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRL-   73 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC-
Confidence            67899999999998888884432   222            156788999999999999999988764 1123433211 


Q ss_pred             chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861           87 GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLL  163 (273)
Q Consensus        87 ~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL  163 (273)
                                     .|+ ....+....|..+.--|.--+..|.-....   ..|+......-.|+..|-.|..+++.++
T Consensus        74 ---------------~~~-~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l  137 (153)
T cd00907          74 ---------------GKL-RIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQL  137 (153)
T ss_pred             ---------------CCC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           001 111366778888888888899999987543   6788899999999999999999999988


Q ss_pred             Hhh
Q 037861          164 YQK  166 (273)
Q Consensus       164 ~~~  166 (273)
                      ...
T Consensus       138 ~~~  140 (153)
T cd00907         138 DLI  140 (153)
T ss_pred             HHH
Confidence            764

Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best

>PF13668 Ferritin_2: Ferritin-like domain

Probab=94.86  E-value=0.095  Score=43.02  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=48.9

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK   75 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg   75 (273)
                      .+|.++|.+|+.+|..-..+|..++.     .       .-++.++..+..|+..|..|...||..|+
T Consensus        81 ~~~~~~L~~A~~~E~~~~~~Y~g~~~-----~-------~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~  136 (137)
T PF13668_consen   81 TDDASFLRLAYTLEDVGVSAYKGAAP-----Q-------IEDPELKALAASIAGVEARHAAWIRNLLG  136 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-----H-------cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47899999999999999999998852     1       13688999999999999999999999875

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=94.03  E-value=0.66  Score=40.00  Aligned_cols=99  Identities=15%  Similarity=0.084  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHhhc---C--CCCCcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcc
Q 037861           48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK---G--FPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNP  122 (273)
Q Consensus        48 l~~~v~~~~~eia~~E~~HV~~L~~aLg---a--~~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E  122 (273)
                      -++.+++.+.+|+.+|..|+..|-..+.   +  ...|-   ++.                -.++-.|...-|......|
T Consensus        51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw---~~~----------------yv~~~~d~~~~L~~ni~aE  111 (156)
T cd01051          51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPW---TAA----------------YIQSSGNLVADLRSNIAAE  111 (156)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC---CCc----------------ccCCCCCHHHHHHHHHHHH
Confidence            3588999999999999999999988764   2  11222   210                1233456677888888889


Q ss_pred             chhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861          123 YVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus       123 ~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                      .-+..-|.=.+..++|+.++...--|+.-|-.|.-.++.+|.+
T Consensus       112 ~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~  154 (156)
T cd01051         112 SRARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALES  154 (156)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988764

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=93.91  E-value=0.19  Score=39.70  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             CCCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 037861            7 PQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNT   73 (273)
Q Consensus         7 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a   73 (273)
                      ..++.++|..|+..|---.+||...+..            ..++.++.++++|..+|..|+..|+..
T Consensus        84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~~------------~~d~~~~~~~~~l~~~E~~H~~~l~~~  138 (139)
T cd01045          84 LMDPLEALRLAIEIEKDAIEFYEELAEK------------AEDPEVKKLFEELAEEERGHLRLLEEL  138 (139)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999988532            246899999999999999999999863

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=93.68  E-value=0.25  Score=41.48  Aligned_cols=55  Identities=11%  Similarity=0.205  Sum_probs=47.0

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV   74 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL   74 (273)
                      .+..++|.+++.+|.=--+||...+-     .       ..++.+++++.+|..+|..|.+.|++.|
T Consensus       100 ~~~~~~L~~~~~~E~~ai~~Y~~~~~-----~-------~~d~~~r~ll~~I~~eE~~H~~~L~~~l  154 (154)
T cd07908         100 ESIKEMLKLDIASEKAAIAKYKRQAE-----T-------IKDPYIRALLNRIILDEKLHIKILEELL  154 (154)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHH-----H-------cCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            35577999999999999999999853     1       2478999999999999999999998754

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>PRK10635 bacterioferritin; Provisional

Probab=92.56  E-value=4  Score=35.17  Aligned_cols=131  Identities=15%  Similarity=0.072  Sum_probs=92.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-+|+.|+.-..=|..-+.=  ++.      -+++..-.. +..-+.+|..|...|..-+- =-..|.++-     
T Consensus         8 i~~LN~~L~~El~Ai~QY~~ha~~--~~~------~G~~~la~~-~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~-----   73 (158)
T PRK10635          8 INYLNKLLGNELVAINQYFLHARM--FKN------WGLMRLNDV-EYHESIDEMKHADKYIERILFLEGIPNLQD-----   73 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHc------CCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-----
Confidence            688999999999887666443211  000      123222223 33337899999999887643 112333321     


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                 + ++..+-.|....|......|.-.+.-|.=++..   ..|...+.+...|+.-|-.|.-++.+.|...
T Consensus        74 -----------~-~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i  141 (158)
T PRK10635         74 -----------L-GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLI  141 (158)
T ss_pred             -----------C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0 112233689999999999999999999988886   5688899999999999999999999998865


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      .
T Consensus       142 ~  142 (158)
T PRK10635        142 G  142 (158)
T ss_pred             H
Confidence            4

>TIGR02284 conserved hypothetical protein

Probab=92.23  E-value=4.2  Score=34.19  Aligned_cols=128  Identities=12%  Similarity=0.072  Sum_probs=96.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=.+...|=--++|..++     +++       -++.++.++++++.+...|+.-|+..+. -...|.-+   ++|
T Consensus         2 i~~Ln~Lie~~~D~~~gY~~aa-----e~v-------~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~---gs~   66 (139)
T TIGR02284         2 IHSLNDLIEISIDGKDGFEESA-----EEV-------KDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDH---GSM   66 (139)
T ss_pred             hHHHHHHHHHcccHHHHHHHHH-----HHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CcH
Confidence            4678888888888888999885     221       3689999999999999999999999886 12234321   234


Q ss_pred             HHHHH-------HhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC-CCHHHHHHHHhHHHhhhhhHHHHHH
Q 037861           90 AKVID-------KAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL-QDAVSQRLAAGLLGVKSGQDAIIRT  161 (273)
Q Consensus        90 ~~~~~-------~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l-~~~~~l~~AA~Il~VEA~Haa~IR~  161 (273)
                      ...+.       .+++.         .++..+|....-=|+..+.+|.-+...- -.++++...-..+.-+-+|..+||.
T Consensus        67 ~g~lhr~w~~lks~~~~---------~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~  137 (139)
T TIGR02284        67 VGSLHQFWGKIRATLTP---------NDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRA  137 (139)
T ss_pred             HHHHHHHHHHHHHHHcC---------CChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333       33332         4688899999999999999999998775 5777888888888888888877775


Q ss_pred             H
Q 037861          162 L  162 (273)
Q Consensus       162 l  162 (273)
                      +
T Consensus       138 l  138 (139)
T TIGR02284       138 L  138 (139)
T ss_pred             c
Confidence            4

Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain

Probab=89.92  E-value=7.5  Score=31.82  Aligned_cols=126  Identities=10%  Similarity=-0.082  Sum_probs=89.6

Q ss_pred             chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcch
Q 037861           10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGS   88 (273)
Q Consensus        10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~   88 (273)
                      ..+.||=|+.-|+-....|..-+.-.  ..      .++ +.+.+.+..++..|..|..-+.+.|. -...|.   .   
T Consensus         2 t~~~L~~a~~~E~~a~~~Y~~~a~~a--~~------~g~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~---~---   66 (134)
T cd01041           2 TEKNLLAAFAGESQARNRYTYFAEKA--RK------EGY-EQIARLFRATAENEKEHAKGHFKLLKGLGGGDT---G---   66 (134)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHH--HH------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---C---
Confidence            35789999999998777776543210  00      122 56778899999999999999888876 222333   1   


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccch-hhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYV-GLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLY  164 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~V-GvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~  164 (273)
                                     |-.++.+...-|..+..-|.- ....|.-.+.   .-.+..+....-.|+..|.+|..++..+|.
T Consensus        67 ---------------~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~  131 (134)
T cd01041          67 ---------------PPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALE  131 (134)
T ss_pred             ---------------CCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                           122456777778888888873 5566665544   456777888889999999999999998886


Q ss_pred             h
Q 037861          165 Q  165 (273)
Q Consensus       165 ~  165 (273)
                      .
T Consensus       132 ~  132 (134)
T cd01041         132 N  132 (134)
T ss_pred             c
Confidence            4

Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.

>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B

Probab=89.56  E-value=1.2  Score=37.61  Aligned_cols=117  Identities=16%  Similarity=0.121  Sum_probs=79.5

Q ss_pred             hhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--C----CCCCcccCCcc
Q 037861           14 LEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--G----FPRPLLDLSAG   87 (273)
Q Consensus        14 LNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a----~~~P~id~s~~   87 (273)
                      |+=+|.-||       .++||+|+-.      +.+++..+..+.+...........|...|.  +    .+.|-|.+   
T Consensus         2 L~~al~aE~-------aAvy~ygv~~------a~~~~~~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~l---   65 (131)
T PF14530_consen    2 LQAALAAEH-------AAVYGYGVAA------ARLDGDRRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQL---   65 (131)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHH------HHS-GGGHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS------
T ss_pred             HHHHHHHHH-------HHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC---
Confidence            456778888       2334443322      568888888888888888888888888887  1    22344544   


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861           88 SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLY  164 (273)
Q Consensus        88 ~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~  164 (273)
                                      || |-+|..+-+..+..+|.=-..+|.... .-++.+.+..+...|..-+.-..-.|..+.
T Consensus        66 ----------------P~-~v~d~~sa~~la~~lE~~~a~aw~~lv-~a~~~~~R~~av~aL~~aA~ra~~W~~~~g  124 (131)
T PF14530_consen   66 ----------------PF-PVTDPASAAALAAALEDDCAAAWRALV-AATDPALRRFAVDALTEAAVRAARWRAAAG  124 (131)
T ss_dssp             ----------------SS----SHHHHHHHHHHHHHHHHHHHHHHH-H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CC-CCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHhccccC
Confidence                            34 357888888888999999999999999 888999999998888877766665555444

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=88.72  E-value=1.1  Score=35.33  Aligned_cols=52  Identities=15%  Similarity=0.105  Sum_probs=44.1

Q ss_pred             chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 037861           10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNT   73 (273)
Q Consensus        10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a   73 (273)
                      ...+|..|+..|---..||...+..            .-++.+++++.+|+.+|..|+..|+..
T Consensus        85 ~~~~l~~a~~~E~~~~~~Y~~~a~~------------~~~~~~~~~~~~l~~~E~~H~~~l~~l  136 (137)
T PF02915_consen   85 LEEALEMAIKEEKDAYEFYAELARK------------APDPEIRKLFEELAKEEKEHEDLLEKL  136 (137)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHH------------TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678888999999889999988532            247899999999999999999999864

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function

Probab=88.58  E-value=15  Score=32.34  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=94.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~   88 (273)
                      .+-|-|.+-=|+|....|..-.-                .+-..++..|+.-|+.|..++...+.  +++-|.-+.+.+.
T Consensus         2 ~~~Ll~m~EEEKlArDvY~~l~~----------------~~g~~~F~NIa~SEq~Hmdav~~Ll~kY~l~dP~~~~~~G~   65 (162)
T PF09968_consen    2 IEGLLYMREEEKLARDVYLTLYE----------------KWGLPIFNNIARSEQRHMDAVKALLEKYGLEDPVEGDPVGV   65 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----------------HH--HHHHHHHHHHHHHHHHHHHHHHHTT---S-SS-STT-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH----------------HcCChHhHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence            45688999999999999987632                23356799999999999999999998  8888887765445


Q ss_pred             HH-----HHHHHh--cCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHH
Q 037861           89 FA-----KVIDKA--FGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRT  161 (273)
Q Consensus        89 F~-----~~~~~A--~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~  161 (273)
                      |+     ++-+..  -|.         .+...-|.....+|.+-+.=+.-+...-.+++++.+=-.++.--..|-.....
T Consensus        66 f~~~~lq~LY~~Lv~~G~---------~S~~dAl~vga~iEe~dI~DL~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r  136 (162)
T PF09968_consen   66 FTNPELQELYNQLVEQGS---------KSLEDALKVGALIEELDIADLEEALARTDNEDIKTVYENLRRGSRNHLRAFVR  136 (162)
T ss_dssp             -SSHHHHHHHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhh---------hcHHHHHHHhHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44     111111  121         24556677788899999998888888888898887777777666678655555


Q ss_pred             HHHhhhcccCCCCCccHHHHHHHH
Q 037861          162 LLYQKANEKVHPYGIPVAAFTNKI  185 (273)
Q Consensus       162 lL~~~~~~~v~Py~~tV~~~t~~I  185 (273)
                      .|-..+. .-.|--++-.+|-.-|
T Consensus       137 ~L~~~g~-~Y~pq~ls~~e~~~i~  159 (162)
T PF09968_consen  137 QLERYGV-TYTPQYLSQEEFEAIL  159 (162)
T ss_dssp             HHHHTT------SSS-HHHHHHHH
T ss_pred             HHHHcCC-CCCCeecCHHHHHHHH
Confidence            5555543 4566667777765544

; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=88.13  E-value=2.4  Score=31.59  Aligned_cols=55  Identities=11%  Similarity=0.038  Sum_probs=44.7

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV   74 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL   74 (273)
                      .++.++|..++..|--...+|......            .-++.+++++..+..+|..|+..++..+
T Consensus        76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~------------~~d~~~~~~~~~~~~~E~~H~~~~~~~~  130 (130)
T cd00657          76 DDPAEALRAALEVEARAIAAYRELIEQ------------ADDPELRRLLERILADEQRHAAWFRKLL  130 (130)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            455788999999999888888876421            1268999999999999999999998753

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>TIGR00754 bfr bacterioferritin

Probab=85.22  E-value=21  Score=29.94  Aligned_cols=130  Identities=18%  Similarity=0.052  Sum_probs=91.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=+|+-||.-...|..-+.-.  ..      -++ +.+...+...+.+|..|..-|-.-|- -..+|.+.      
T Consensus         8 ~~~LN~~l~~E~~a~~~Y~~~~~~~--~~------~~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~------   72 (157)
T TIGR00754         8 IQHLNKQLTNELTAINQYFLHARMQ--KN------WGL-KELADHEYHESIDEMKHADEIIERILFLEGLPNLQ------   72 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--Hc------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------
Confidence            5889999999996655555442211  00      112 34455677788899999999987654 11233321      


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                ++. +..+-.+....+..+.-.|...+..|...+.   ...|+....+.-.|+.-|-.|.-++|+.|...
T Consensus        73 ----------~i~-~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~  141 (157)
T TIGR00754        73 ----------DLG-KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELI  141 (157)
T ss_pred             ----------cCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      011 1222357888899999999999999999854   67888899999999999999999999998754

Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.

>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []

Probab=83.51  E-value=20  Score=28.23  Aligned_cols=132  Identities=15%  Similarity=0.156  Sum_probs=94.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---CCCCCcccCCcc
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK---GFPRPLLDLSAG   87 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a~~~P~id~s~~   87 (273)
                      ++.||-++++|+--...|..-..=.  .  .    . --+.+..++++.+.+|..|..-+..-+.   +.|.....    
T Consensus         1 i~~Ln~~l~~e~~~~~~y~~~~~~~--~--~----~-~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~----   67 (142)
T PF00210_consen    1 IEALNEQLALELQASQQYLNMHWNF--D--G----P-NFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPV----   67 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--H--S----T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHH----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--c--C----C-CchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHH----
Confidence            4679999999998888887663210  0  0    0 1167889999999999999999987754   44443221    


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861           88 SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLY  164 (273)
Q Consensus        88 ~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~  164 (273)
                      .+..+       + .|+ . +.+....|..+.-.|......|.......   .|+......-.++.-|..|.-.++..|.
T Consensus        68 ~~~~~-------~-~~~-~-~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~  137 (142)
T PF00210_consen   68 EIPEI-------P-KPP-E-WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLT  137 (142)
T ss_dssp             HHHHH-------H-SSS-S-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhh-------h-ccc-c-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111       0 011 1 56888999999899999999998888777   6778888888899989999888888776


Q ss_pred             h
Q 037861          165 Q  165 (273)
Q Consensus       165 ~  165 (273)
                      .
T Consensus       138 ~  138 (142)
T PF00210_consen  138 N  138 (142)
T ss_dssp             H
T ss_pred             H
Confidence            5

It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....

>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain

Probab=82.92  E-value=19  Score=29.36  Aligned_cols=115  Identities=11%  Similarity=0.047  Sum_probs=80.9

Q ss_pred             hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcccCCcchHHH
Q 037861           12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAK   91 (273)
Q Consensus        12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~id~s~~~F~~   91 (273)
                      +-||=+++-|.-+...|..-+.-.  +.      -++ +.+.+.+..++..|..|...+.+.++.+|             
T Consensus         4 ~~L~~a~~~E~~a~~~Y~~~a~~a--~~------eG~-~~~A~~f~~~a~eE~~HA~~~~~~l~~i~-------------   61 (123)
T cd01046           4 EDLEANFKGETTEVGMYLAMARVA--QR------EGY-PEVAEELKRIAMEEAEHAARFAELLGKVS-------------   61 (123)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHH--HH------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------
Confidence            568899999999998887653210  00      123 56889999999999999999999886554             


Q ss_pred             HHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccc---ccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           92 VIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGAN---PNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        92 ~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaa---p~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                       .|...-|..+.--|.-.+..|...+   -.-.+.+....--.|+.+|..|.-+++.+|..
T Consensus        62 -----------------~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~  121 (123)
T cd01046          62 -----------------EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLER  121 (123)
T ss_pred             -----------------ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                             1223334444455554444454433   34457778888889999999999999988764

Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.

>cd01055 Nonheme_Ferritin nonheme-containing ferritins

Probab=82.76  E-value=26  Score=29.02  Aligned_cols=130  Identities=13%  Similarity=0.047  Sum_probs=81.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=+++.|+--...|+.-+.-.  +.      .++ +.+...++..+.+|..|...+-+-|- -...|.+.--    
T Consensus         5 ~~~Ln~~~~~El~A~~~Yl~~a~~~--~~------~~~-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~----   71 (156)
T cd01055           5 EKALNEQINLELYSSYLYLAMAAWF--DS------KGL-DGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAI----   71 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hh------cCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCC----
Confidence            4679999999998888887653211  11      122 57788899999999999999887763 1112222100    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                  .++-..+.+....|..+.-.|.--+..|.-....   ..|+......-.|+..|..|...++.++..
T Consensus        72 ------------~~~~~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~  138 (156)
T cd01055          72 ------------EAPPSEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDK  138 (156)
T ss_pred             ------------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        0011124577788888888888877777755444   345555555556666666666555555553

Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=81.82  E-value=4.5  Score=35.48  Aligned_cols=106  Identities=16%  Similarity=0.101  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhh
Q 037861           48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGL  126 (273)
Q Consensus        48 l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGv  126 (273)
                      -++.++..+++++.+|..|+....+.|. --.||.+-..  -| .++.-++|.     .-....+...+..-...|.+-.
T Consensus        27 ~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~P--lW-~~~gf~lG~-----~tal~G~~~a~~~~~avE~~V~   98 (165)
T cd01042          27 RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLP--LW-YVAGFALGA-----LTALLGKKAAMACTAAVETVVE   98 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH--HH-HHHHHHHHH-----HHHhhChHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999987 4456654321  11 111111110     0001234445666667788888


Q ss_pred             hhhccccccCC---CHHHHHHHHhHHHhhhhhHHHHHH
Q 037861          127 TGYVGANPNLQ---DAVSQRLAAGLLGVKSGQDAIIRT  161 (273)
Q Consensus       127 sAY~Gaap~l~---~~~~l~~AA~Il~VEA~Haa~IR~  161 (273)
                      .=|...+..|.   ++.++.....+.--|..|.-.-..
T Consensus        99 ~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~  136 (165)
T cd01042          99 EHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEE  136 (165)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999998887   888999999999999999865443

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
2ib0_A	170	Conserved hypothetical alanine rich protein; 4-hel	98.69
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	98.1
2fzf_A	175	Hypothetical protein; structural genomics, southea	97.94
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	97.88
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	96.92
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	96.81
4etr_A	153	Putative uncharacterized protein; DUF2383, domain	96.57
3q4o_A	196	Uncharacterized protein MJ0754; ferritin-like prot	96.43
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	96.27
3gvy_A	161	Bacterioferritin; iron storage, DI-iron, ferroxida	96.26
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	96.12
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	96.06
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	96.06
3uoi_A	161	Bacterioferritin, BFR; structural genomics, TB str	95.78
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	95.56
4am5_A	159	Bacterioferritin; metal binding protein, ferroxida	95.04
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	95.01
1j30_A	144	144AA long hypothetical rubrerythrin; sulerythrin,	94.72
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	94.55
3fvb_A	182	Bacterioferritin; niaid, ssgcid, decode, structura	93.81
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	93.64
2vzb_A	170	Putative bacterioferritin-related protein; DPS, DP	92.91
1ji5_A	142	DLP-1; dodecamer, four-helix bundle, metal transpo	92.34
2fzf_A	175	Hypothetical protein; structural genomics, southea	91.66
1n1q_A	149	DPS protein; four-helix bundle, unknown function;	90.8
1jig_A	146	DLP-2; dodecamer, four-helix bundle, metal transpo	89.12
1krq_A	167	Ferritin; H-chain like four-helix bundle, binding	87.34
3oj5_A	189	Ferritin family protein; ferroxidase, cytosol, oxi	86.46
4di0_A	144	Rubrerythrin; ssgcid, seattle structural genomics	85.79
2jd6_0	174	Ferritin homolog, ferritin; metal transport, iron,	85.67
2vxx_A	192	Starvation induced DNA binding protein; stress res	85.42
1eum_A	165	Ferritin 1; ECFTNA, metal binding protein; 2.05A {	84.97
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	84.69
2rbd_A	171	BH2358 protein; putative spore coat protein, struc	83.68
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	82.74
3uno_A	189	Probable bacterioferritin BFRB; ferroxidase activi	80.42
2v8t_A	302	Manganese-containing pseudocatalase; manganese cat	80.13

>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structur initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9

Probab=98.69  E-value=3.8e-08  Score=84.95  Aligned_cols=126  Identities=15%  Similarity=0.021  Sum_probs=106.6

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---CC---CCCcc
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK---GF---PRPLL   82 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a~---~~P~i   82 (273)
                      .|+++||-||..||       .+++|+|+-.      +.+++.+++.+.+...+...|...|+.+|.   +.   ++|.|
T Consensus        21 ~d~~aL~~ALaaEh-------aAIyaYGv~~------a~l~~~~~~~a~~~~~~HrarRD~L~~~l~~~G~~pp~a~aaY   87 (170)
T 2ib0_A           21 ADNAALCDALAVEH-------ATIYGYGIVS------ALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGY   87 (170)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHH------HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSC
T ss_pred             hHHHHHHHHHHHHH-------HHHHHHHHHH------hccChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCcC
Confidence            57899999999999       3344444432      578999999999999999999999999986   22   23445


Q ss_pred             cCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861           83 DLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTL  162 (273)
Q Consensus        83 d~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~l  162 (273)
                      +|                   ||. .+|..+-+..+..+|.=...+|.+.++...+++.++.|+++|+.++.|++..|..
T Consensus        88 ~l-------------------P~~-v~d~asa~~lAa~lE~~~A~ay~~~v~~a~~~~~R~~A~~aL~~aAvr~a~wr~a  147 (170)
T 2ib0_A           88 QL-------------------PMQ-VSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRV  147 (170)
T ss_dssp             CC-------------------SSC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-------------------CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54                   343 5888999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q 037861          163 LYQKA  167 (273)
Q Consensus       163 L~~~~  167 (273)
                      +++..
T Consensus       148 lG~~P  152 (170)
T 2ib0_A          148 LGAWP  152 (170)
T ss_dssp             HHHSC
T ss_pred             cCCCC
Confidence            99876

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=98.10  E-value=3.6e-05  Score=64.22  Aligned_cols=139  Identities=17%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcC--CCC-CcccCC
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKG--FPR-PLLDLS   85 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga--~~~-P~id~s   85 (273)
                      +..++|+.|+..|.-...||...+..  +..       .-++.++.++.+++.+|..|...|++..+.  .|. |..++-
T Consensus         5 ~~~e~L~~Ai~~E~~~~~~Y~~lA~~--~~~-------~~~~~~k~~f~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~~~   75 (167)
T 2oh3_A            5 TLAEFLAHAIALETEAAERYVELADM--MEA-------HNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYR   75 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGGTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Confidence            46789999999999999999888530  001       136899999999999999999999998773  331 222220


Q ss_pred             cchHHHHHHHhcCCCCC-C--CCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861           86 AGSFAKVIDKAFGKPLN-P--PLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTL  162 (273)
Q Consensus        86 ~~~F~~~~~~A~g~~l~-p--~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~l  162 (273)
                      ...          .+.. +  ...+..+....|..|.-.|.-++.-|.-++....|+..+.+.-.|...|..|..+++.+
T Consensus        76 ~~~----------~~~~~~~~~~~~~~~~~~~l~~A~~~E~~a~~fY~~~a~~~~d~~~k~~~~~la~eE~~H~~~l~~~  145 (167)
T 2oh3_A           76 WKT----------PPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKW  145 (167)
T ss_dssp             CCC----------CCCSSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC----------cHhhhhHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000          0010 0  12344577888999999999999999999999999999999999999999999999998


Q ss_pred             HHhh
Q 037861          163 LYQK  166 (273)
Q Consensus       163 L~~~  166 (273)
                      +...
T Consensus       146 ~~~~  149 (167)
T 2oh3_A          146 IEKT  149 (167)
T ss_dssp             HHHS
T ss_pred             HHHc
Confidence            7654

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=97.94  E-value=5.7e-05  Score=63.24  Aligned_cols=136  Identities=14%  Similarity=0.058  Sum_probs=106.2

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc----CCCCCcccC
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK----GFPRPLLDL   84 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg----a~~~P~id~   84 (273)
                      +-.++|+.|+..|.-...||...+...            -++.++.++.+++.+|..|...|.+.+.    ..+.|..+.
T Consensus        20 ~~~e~L~~A~~~E~~a~~~Y~~~A~~~------------~~~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~~~~~~~   87 (175)
T 2fzf_A           20 SLEELLGMAIKAEIGAREFYKSLAEKI------------KIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKE   87 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSC------------CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhh
Confidence            457899999999999999999886421            3588999999999999999999998865    333333211


Q ss_pred             CcchHHHHHHHhcCCCCCCC---CCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHH
Q 037861           85 SAGSFAKVIDKAFGKPLNPP---LDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRT  161 (273)
Q Consensus        85 s~~~F~~~~~~A~g~~l~p~---FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~  161 (273)
                        ..|        . .+.|.   +....+....|..+.-.|.-.+.-|.-.+....++.++.+.-.|...|..|...++.
T Consensus        88 --~~~--------~-~~~~~~~~~~~~~~~~~~L~~ai~~E~~a~~~Y~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~  156 (175)
T 2fzf_A           88 --HIG--------P-ELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRA  156 (175)
T ss_dssp             --CBS--------C-CCCCCCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hhh--------h-hhhhhHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011        0 11111   222345677888899999999999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 037861          162 LLYQKA  167 (273)
Q Consensus       162 lL~~~~  167 (273)
                      ++....
T Consensus       157 ~l~~l~  162 (175)
T 2fzf_A          157 EYELLL  162 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887643

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=97.88  E-value=0.00015  Score=60.10  Aligned_cols=137  Identities=12%  Similarity=0.014  Sum_probs=105.4

Q ss_pred             CCCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcc-cC-
Q 037861            7 PQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLL-DL-   84 (273)
Q Consensus         7 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~i-d~-   84 (273)
                      +.+..++|..|+..|.-...||...+. .            -++.+++++.+++.+|..|...|++......-|.. .+ 
T Consensus        12 ~~~~~e~L~~Ai~~E~~~~~~Y~~lA~-~------------~~~~~k~lF~~LA~eE~~H~~~l~~l~~~~~~~~~~~~l   78 (157)
T 1vjx_A           12 HMKVSDILTVAIRLEEEGERFYRELSE-H------------FNGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYL   78 (157)
T ss_dssp             SCBHHHHHHHHHHHHHHHHHHHHHHTT-S------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH-c------------CCHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHH
Confidence            456789999999999999999999864 2            35899999999999999999999988541111110 00 


Q ss_pred             CcchHHHHHHHhcCCCCCCCCC-----CCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHH
Q 037861           85 SAGSFAKVIDKAFGKPLNPPLD-----PYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAII  159 (273)
Q Consensus        85 s~~~F~~~~~~A~g~~l~p~Fd-----Py~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~I  159 (273)
                      ...         .-..+-|.+.     +..+....|..|.-.|.-.+.-|.-++..+.++..+++...|...|..|...+
T Consensus        79 ~~~---------~~~~~f~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~~a~~~~d~~~k~l~~~la~eE~~H~~~l  149 (157)
T 1vjx_A           79 AGY---------AFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKL  149 (157)
T ss_dssp             CSB---------CCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhh---------hhhhccchhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            000         0001111111     33457788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 037861          160 RTLLYQ  165 (273)
Q Consensus       160 R~lL~~  165 (273)
                      +.++.+
T Consensus       150 ~~~~~~  155 (157)
T 1vjx_A          150 LEMKRE  155 (157)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988765

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=96.92  E-value=0.019  Score=45.44  Aligned_cols=128  Identities=12%  Similarity=0.030  Sum_probs=98.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-+|+.|+-...+|.....-.  ..      .++ +.+...+.+++.+|..|+..|..-+. -...|..++.    
T Consensus        12 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~----   78 (149)
T 2qqy_A           12 IEGLNEDLAGEYSAIIMYNHNAATV--SG------IYR-QVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPL----   78 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC--CS------TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--cC------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCC----
Confidence            5789999999999999998775321  00      111 46889999999999999998887653 1123443332    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                    +.....+....|..+.-.|.-.+..|.-.+..   ..|+......-.|+..|-.|.-+++.+|.+
T Consensus        79 --------------~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~  143 (149)
T 2qqy_A           79 --------------RVKQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLND  143 (149)
T ss_dssp             --------------CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             --------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                          12234578889999999999999999988776   678999999999999999999999998875

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.81  E-value=0.016  Score=54.90  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=106.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCC-cch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLS-AGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s-~~~   88 (273)
                      +..||.|+.=|++..+.|.+-+.-            --|+.++.++++|..+++.|+..|+.-|. =..+|..+-. .+.
T Consensus       212 v~~ln~a~~ge~~~~~a~e~~a~~------------~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~~~~  279 (365)
T 3fse_A          212 VRGLNTALGGERYSLEALEKYTEK------------ESDVEAKALFQEMITNKQRHIEYLETYLTRLGEKPSLSANIANQ  279 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC----
T ss_pred             hHHHHHHhhcChhHHHHHHHHHHh------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcchhHH
Confidence            678999999999999999877421            23799999999999999999999998887 3445654432 134


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhhc
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKAN  168 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~  168 (273)
                      ++++....         .. .++...|.-++--|..|+.-+.=....++||..++..--|+.--+.|.-.+-.+...|..
T Consensus       280 ~a~~~~~~---------~~-~~~~~~l~~al~~~~~gi~~~~~l~~~~~dp~~~~i~~~i~~~l~~~e~~~~~l~~~~~~  349 (365)
T 3fse_A          280 YAKVKTAL---------TG-SDDIYQIRSALGDIQTGIGDIGNLCAMYTDPIATAIFKEIYKDLVKYEQRLVSLYRTRTN  349 (365)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---------cC-CChHHHHHHHhcchhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44442222         22 678889999999999999999999999999999999999999888888777777666665


Q ss_pred             ccCCCC
Q 037861          169 EKVHPY  174 (273)
Q Consensus       169 ~~v~Py  174 (273)
                      ..+.|-
T Consensus       350 ~~~~~~  355 (365)
T 3fse_A          350 ATVQPP  355 (365)
T ss_dssp             HSCSSC
T ss_pred             CCCCCC
Confidence            455554

>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}

Probab=96.57  E-value=0.033  Score=45.97  Aligned_cols=141  Identities=14%  Similarity=0.018  Sum_probs=98.7

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcc
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAG   87 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~   87 (273)
                      ..++.||=.|..++=-.++|..++-..            -++.++.++.+++.+...|+..|+..|. -...|..  + +
T Consensus        11 ~~i~~Ln~Li~~~~D~~~gY~~aae~~------------~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~--~-~   75 (153)
T 4etr_A           11 DTLDVLNDLLQTSKDGEAGFHACAEDL------------RDPQLKAAMLEQSRDCAAAADELERIVLELGGKPKD--S-T   75 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--C-C
Confidence            468899999999999999999986421            3689999999999999999999999876 2223431  1 1


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           88 SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        88 ~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                      +|...+..+.- .+...|.. .++...|.....=|+..+.+|.-++..--.++++.+...++..+-.|...|+.+..+|
T Consensus        76 s~~g~~hr~~~-~lks~~~~-~~~~~iL~~~~~gE~~~~~~Y~~al~~~lp~~~r~ll~~q~~~~~~~~d~~~~Lr~~~  152 (153)
T 4etr_A           76 SFAGDLHRRWV-DLKSLVTG-KDEEAVLNECERGEDVAKHRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRALRDAR  152 (153)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHH-HHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            23322222210 01111221 2567889999999999999999998765678899999999999999999999886543

>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A

Probab=96.43  E-value=0.033  Score=48.89  Aligned_cols=155  Identities=14%  Similarity=0.127  Sum_probs=113.8

Q ss_pred             CCCCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCccc
Q 037861            6 LPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLD   83 (273)
Q Consensus         6 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id   83 (273)
                      .+..+.+-|-|++.=|||...+|....-.+|                ...+..|+.-|+.|+.++...+.  +++-|.-+
T Consensus        24 Ls~~E~~~Ll~m~EEEklArdvY~~l~e~~g----------------~~~F~NIa~SEq~H~dal~~Ll~rYgl~~P~~~   87 (196)
T 3q4o_A           24 ISEEEKEGLIEMREEEKLARDVYLTLYNKWK----------------LQIFKNIAESEQTHMDAVKYLLEKYNIPDPVKN   87 (196)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------CchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            3445678899999999999999987743332                25688999999999999999998  88888754


Q ss_pred             CCcchH-----HHHHHHhc--CCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhH
Q 037861           84 LSAGSF-----AKVIDKAF--GKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQD  156 (273)
Q Consensus        84 ~s~~~F-----~~~~~~A~--g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Ha  156 (273)
                      -..+.|     .++-+...  |.         .+...=|.....+|.+-+.-|.-......+++++.+--.+...--.|-
T Consensus        88 ~~~G~f~~p~lq~LY~~L~e~G~---------~S~~dAl~vGa~iEe~dI~dl~~~l~~t~~~Di~~Vy~nL~~gS~nHL  158 (196)
T 3q4o_A           88 DSIGVFSNPKFEELYKKLVEKGD---------KSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHM  158 (196)
T ss_dssp             CSTTCCSSHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeccHhHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            333332     22222221  11         245556667788899999999999999999999988888888767998


Q ss_pred             HHHHHHHHhhhcccCCCCCccHHHHHHHHH
Q 037861          157 AIIRTLLYQKANEKVHPYGIPVAAFTNKIS  186 (273)
Q Consensus       157 a~IR~lL~~~~~~~v~Py~~tV~~~t~~IS  186 (273)
                      ...+..|...+ ....|--++-.||-.-|+
T Consensus       159 rAF~r~L~~~G-~~Y~pq~ls~~e~~~i~~  187 (196)
T 3q4o_A          159 RAFVRMLNNYG-SNYTPQYISKEEYEEIIS  187 (196)
T ss_dssp             HHHHHHHHHTT-CCCCCSSSCHHHHHHHHT
T ss_pred             HHHHHHHHHCC-CCCCCccCCHHHHHHHHC
Confidence            77777776555 445777788887765554

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*

Probab=96.27  E-value=0.05  Score=45.02  Aligned_cols=131  Identities=9%  Similarity=0.009  Sum_probs=99.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-+|+.|+-...+|..-+.-.  ..      .++ +.+..++.+++.+|..|...|..-+. -..+|.+....   
T Consensus        13 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~---   80 (179)
T 1nfv_A           13 IEVLNKARAMELHAIHQYMNQHYSL--DD------MDY-GELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEG---   80 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTB-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSS---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hc------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCC---
Confidence            6889999999999999998764210  00      112 67899999999999999999987765 11234332110   


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                +  |+-+  .+....|..+.-.|.-.+..|.-.+..   ..|+......-.|+..|-.|.-+++.+|...
T Consensus        81 ----------~--~~~~--~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~l  146 (179)
T 1nfv_A           81 ----------K--VVTG--QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHI  146 (179)
T ss_dssp             ----------C--CCCS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------c--CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1  1111  478889999999999999999987764   5788999999999999999999999998764


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      .
T Consensus       147 ~  147 (179)
T 1nfv_A          147 K  147 (179)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1

Probab=96.26  E-value=0.065  Score=43.39  Aligned_cols=127  Identities=17%  Similarity=0.092  Sum_probs=95.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcc---cCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcc-cCC
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGS---LGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLL-DLS   85 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~---~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~i-d~s   85 (273)
                      ++.||-+|+.|+--..-|..-.   .|.+           + +.+...+.+++.+|..|+..|-.-+. -..+|.+ ++.
T Consensus         8 ~~~Ln~~la~E~~a~~~Y~~~a~~~~~~~-----------~-~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~~   75 (161)
T 3gvy_A            8 IEYLNAALRSELTAVSQYWLHYRLQEDWG-----------F-GSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLN   75 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------C-TTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCCC
Confidence            6789999999998777775322   2222           2 45678899999999999999987653 1123433 221


Q ss_pred             cchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861           86 AGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTL  162 (273)
Q Consensus        86 ~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~l  162 (273)
                                       |+ ....+....|..+.-.|...+..|.-...   ...|+.+....-.|+..|-.|..+++..
T Consensus        76 -----------------~~-~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eEe~h~~~l~~~  137 (161)
T 3gvy_A           76 -----------------PL-RIGQTLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQ  137 (161)
T ss_dssp             -----------------CC-CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             11 23468889999999999999999998554   5778999999999999999999999998


Q ss_pred             HHhhh
Q 037861          163 LYQKA  167 (273)
Q Consensus       163 L~~~~  167 (273)
                      +....
T Consensus       138 l~~i~  142 (161)
T 3gvy_A          138 IDLMG  142 (161)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77644

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A

Probab=96.12  E-value=0.11  Score=41.64  Aligned_cols=130  Identities=14%  Similarity=0.032  Sum_probs=97.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=+|+.|+--..-|..-..-  ++.      .++ +.+...+.+.+.+|..|+..|-.-+. -..+|.+++..   
T Consensus         8 ~~~Ln~~la~E~~a~~~Y~~~a~~--~~~------~~~-~~l~~~f~~~a~ee~~had~l~eri~~lGg~p~~~~~~---   75 (154)
T 3r2k_A            8 IDYLNTLLTGELAARDQYFIHSRM--YED------WGF-SKLYERLNHEMEEETQHADALLRRILLLEGTPRMRPDD---   75 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHc------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---
Confidence            578999999999877777654210  000      112 56788899999999999999887654 22345444431   


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHh-hhhhHHHHHHHHHh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGV-KSGQDAIIRTLLYQ  165 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~V-EA~Haa~IR~lL~~  165 (273)
                                     .....+....|..+.-.|.-.+..|.......   .|+......-.|+.. |-.|..+++..|..
T Consensus        76 ---------------~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~e~ee~h~~~l~~~l~~  140 (154)
T 3r2k_A           76 ---------------IHPGTTVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDILKAQLADTEEDHAYWLEQQLGL  140 (154)
T ss_dssp             ---------------CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             ---------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           22345788889999999999999999887764   788899999999999 99999999998876


Q ss_pred             hh
Q 037861          166 KA  167 (273)
Q Consensus       166 ~~  167 (273)
                      ..
T Consensus       141 i~  142 (154)
T 3r2k_A          141 IA  142 (154)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*

Probab=96.06  E-value=0.13  Score=40.76  Aligned_cols=129  Identities=16%  Similarity=0.051  Sum_probs=96.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCccc-CCcch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLD-LSAGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id-~s~~~   88 (273)
                      ++.||-+|+.|+-....|.....-.  ..      .++ +.+...+.+.+.+|..|...|..-+. -..+|... +.   
T Consensus         8 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~---   75 (155)
T 2fkz_A            8 IQHLNKILGNELIAINQYFLHARMY--ED------WGL-EKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELG---   75 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--Hh------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---
Confidence            6889999999999999998664310  00      112 56778899999999999998887653 11233332 21   


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                 +    ...-.+....|..+.-.|.-.+..|.-.+...   .|+......-.|+..|-.|..+++..+..
T Consensus        76 -----------~----~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~  140 (155)
T 2fkz_A           76 -----------K----LLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDL  140 (155)
T ss_dssp             -----------C----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------C----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1    11124788899999999999999999887776   78889999999999999999999998865


Q ss_pred             h
Q 037861          166 K  166 (273)
Q Consensus       166 ~  166 (273)
                      .
T Consensus       141 i  141 (155)
T 2fkz_A          141 I  141 (155)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1

Probab=96.06  E-value=0.13  Score=41.25  Aligned_cols=131  Identities=16%  Similarity=0.104  Sum_probs=97.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-+|+.|+-....|.....-.  ..      .++ +.+...+.+++.+|..|...|..-+. -...|.+....   
T Consensus         8 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~---   75 (161)
T 1jgc_A            8 IEFLNAALRSELTAISQYWVHFRLQ--ED------WGL-AKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLD---   75 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hC------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCC---
Confidence            6789999999999999998764210  00      112 56888899999999999999987653 11233321110   


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                +  |+-+  .+....|..+.-.|.-.+..|.-.+...   .|+......-.|+..|-.|..+++.+|...
T Consensus        76 ----------~--~~~~--~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~l  141 (161)
T 1jgc_A           76 ----------P--LRIG--EGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLY  141 (161)
T ss_dssp             ----------C--CCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------c--CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0  1111  5778889999999999999999888776   788899999999999999999999998764


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      .
T Consensus       142 ~  142 (161)
T 1jgc_A          142 D  142 (161)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*

Probab=95.78  E-value=0.25  Score=39.73  Aligned_cols=130  Identities=15%  Similarity=0.045  Sum_probs=95.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcc-cCCcch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLL-DLSAGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~i-d~s~~~   88 (273)
                      ++.||-+|+.|+--..-|..-..-  +..      .++ +.+...+.+++.+|..|+..|-.-+. -..+|.+ ++.   
T Consensus        10 ~~~Ln~~la~E~~a~~~Y~~~a~~--~~~------~~~-~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~---   77 (161)
T 3uoi_A           10 LRLLNEQLTSELTAINQYFLHSKM--QDN------WGF-TELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIG---   77 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHh------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCC---
Confidence            688999999998777777643210  000      112 56888999999999999999887643 1123333 121   


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                 +  |+-+  .+....|..+.-.|.-.+..|.....   ...|+.+....-.|+..|-.|.-+++..|..
T Consensus        78 -----------~--~~~~--~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~  142 (161)
T 3uoi_A           78 -----------S--LRIG--QTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLEL  142 (161)
T ss_dssp             -----------C--CCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------C--CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1  1122  67888899999999999999998854   4578999999999999999999999998876


Q ss_pred             hh
Q 037861          166 KA  167 (273)
Q Consensus       166 ~~  167 (273)
                      ..
T Consensus       143 i~  144 (161)
T 3uoi_A          143 MD  144 (161)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*

Probab=95.56  E-value=0.14  Score=40.90  Aligned_cols=129  Identities=17%  Similarity=0.087  Sum_probs=98.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCccc-CCcch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLD-LSAGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id-~s~~~   88 (273)
                      .+.||-+++.|+-...+|..-..-.  +.      .++ +.+...+.+++.+|..|...|..-+. -...|.+. +.   
T Consensus         8 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~---   75 (158)
T 2y3q_A            8 INYLNKLLGNELVAINQYFLHARMF--KN------WGL-KRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLG---   75 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hh------cCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCC---
Confidence            6789999999999999998764211  00      123 57889999999999999998887654 11233322 11   


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                 +  |+-+  .+....|..+.-.|.-.+..|.-.+...   .|+......-.|+..|-.|..+++..+..
T Consensus        76 -----------~--~~~~--~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~  140 (158)
T 2y3q_A           76 -----------K--LNIG--EDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDL  140 (158)
T ss_dssp             -----------C--CCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------c--CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0  1122  5788889999999999999999887764   78889999999999999999999998876


Q ss_pred             h
Q 037861          166 K  166 (273)
Q Consensus       166 ~  166 (273)
                      .
T Consensus       141 l  141 (158)
T 2y3q_A          141 I  141 (158)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*

Probab=95.04  E-value=0.41  Score=39.04  Aligned_cols=132  Identities=15%  Similarity=0.057  Sum_probs=97.3

Q ss_pred             chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcch
Q 037861           10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGS   88 (273)
Q Consensus        10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~   88 (273)
                      =++.||=+|+.|+--..-|..-+.=  .+.      .++ +.+...+.+.+.+|..|..-|-.-+- -..+|.+.     
T Consensus         7 vi~~LN~~l~~El~A~~~Y~~~a~~--~~~------~g~-~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~-----   72 (159)
T 4am5_A            7 VIEYLNRGLRSELTAVSQYWLHYRM--LED------WGY-KDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQ-----   72 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HHH------HTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--Hhc------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc-----
Confidence            3788999999999888877654310  000      122 56778899999999999998877653 22234321     


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                 ++. +-..+.+..+.+..+.-.|.-.+..|.-.+.   ...|+.+....-.|+..|-.|..++++.|..
T Consensus        73 -----------~~~-~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eEeeH~~~l~~~L~~  140 (159)
T 4am5_A           73 -----------TLD-PLRIGQTVKEVLESDLAAEREARALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDL  140 (159)
T ss_dssp             -----------BCC-CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------ccc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       111 2234678899999999999999999987655   4568888999999999999999999998876


Q ss_pred             hh
Q 037861          166 KA  167 (273)
Q Consensus       166 ~~  167 (273)
                      ..
T Consensus       141 i~  142 (159)
T 4am5_A          141 VS  142 (159)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*

Probab=95.01  E-value=0.28  Score=40.13  Aligned_cols=130  Identities=15%  Similarity=0.049  Sum_probs=97.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCccc-CCcch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLD-LSAGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id-~s~~~   88 (273)
                      .+.||-+++.|+-....|..-..-.  ..      .++ +.+...+.+++.+|..|+..|..-+. -..+|.+. +.   
T Consensus        10 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~---   77 (174)
T 3qb9_A           10 LRLLNEQLTSELTAINQYFLHSKMQ--DN------WGF-TELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIG---   77 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hC------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCC---
Confidence            6789999999999988888764211  10      123 57889999999999999998877654 11233322 11   


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                     +.....+....|..+.-.|.-.+..|.-.+.   ...|+......-.|+..|-.|..+++..+..
T Consensus        78 ---------------~~~~~~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~~~l~eEe~h~~~l~~~l~~  142 (174)
T 3qb9_A           78 ---------------SLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLEL  142 (174)
T ss_dssp             ---------------CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           1122467888999999999999999998874   4578889999999999999999999998876


Q ss_pred             hh
Q 037861          166 KA  167 (273)
Q Consensus       166 ~~  167 (273)
                      ..
T Consensus       143 i~  144 (174)
T 3qb9_A          143 MD  144 (174)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1

Probab=94.72  E-value=0.31  Score=39.29  Aligned_cols=127  Identities=12%  Similarity=0.077  Sum_probs=95.2

Q ss_pred             chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcC--CCCCcccCCcc
Q 037861           10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKG--FPRPLLDLSAG   87 (273)
Q Consensus        10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga--~~~P~id~s~~   87 (273)
                      =.+.||=+++.|.-....|+.-+.-.  +.      .++ +.+...+.+.+.+|..|...+-+-|..  ...|.++    
T Consensus         9 ~~~~Ln~a~~~E~~A~~~Y~~~A~~a--~~------~g~-~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg~p~~~----   75 (144)
T 1j30_A            9 TAENLKQGFIGESMANRRYLYFAKRA--DE------EGY-PEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATD----   75 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTTS----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HH------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcC----
Confidence            36789999999999999998664210  00      123 668899999999999999988777642  3334221    


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchh-hhhhcccc---ccCCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861           88 SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVG-LTGYVGAN---PNLQDAVSQRLAAGLLGVKSGQDAIIRTLL  163 (273)
Q Consensus        88 ~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VG-vsAY~Gaa---p~l~~~~~l~~AA~Il~VEA~Haa~IR~lL  163 (273)
                                        .|+.+....|..+.-.|.-- ...|.-.+   -.-.++.+....-.|+.+|..|..+++.+|
T Consensus        76 ------------------~p~~~~~e~L~~al~~E~~~~~~~y~~~~~~A~~egd~~~~~~f~~i~~~E~~H~~~~~~~l  137 (144)
T 1j30_A           76 ------------------KPIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVL  137 (144)
T ss_dssp             ------------------CBCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              13567888899999999888 57777554   445678889999999999999999999998


Q ss_pred             Hhhh
Q 037861          164 YQKA  167 (273)
Q Consensus       164 ~~~~  167 (273)
                      ....
T Consensus       138 ~~i~  141 (144)
T 1j30_A          138 KQLK  141 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=94.55  E-value=0.066  Score=44.22  Aligned_cols=60  Identities=18%  Similarity=0.310  Sum_probs=51.6

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCC
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRP   80 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P   80 (273)
                      +..++|..|+..|.--..||...+..            .-|+.++.++.+|+.+|..|...|++.+..+.+|
T Consensus        93 ~~~~~l~~A~~~E~~a~~fY~~~a~~------------~~d~~~k~~~~~la~eE~~H~~~l~~~~~~~~~~  152 (167)
T 2oh3_A           93 TPYHALRYARDNEIRGMEYYKEAAAN------------SADPEVKRLGADFAAEEAEHVVALDKWIEKTPRP  152 (167)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            56789999999999999999998531            2479999999999999999999999988755555

>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}

Probab=93.81  E-value=0.51  Score=39.44  Aligned_cols=130  Identities=20%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcc-cCCcch
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLL-DLSAGS   88 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~i-d~s~~~   88 (273)
                      ++.||-+|+.|+--..-|..-..-  +..      .++ +.+...+.+.+.+|..|+..|-.-+. -..+|.+ ++..  
T Consensus        29 ~~~LN~~la~E~~a~~~Y~~~a~~--~~~------~~~-~~l~~~f~~~a~eE~~Had~laeri~~lGg~p~~~~~~~--   97 (182)
T 3fvb_A           29 IERLNEALFLELGAVNQYWLHYRL--LND------WGY-TRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP--   97 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHH------HTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHC------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCC--
Confidence            678999999998877777654211  000      112 56788999999999999999887654 1223443 2221  


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                    |+.  -.+....|..+.-.|...+..|.-...   ...|+.+....-.|+..|-.|..+++..|..
T Consensus        98 --------------~~~--~~~~~e~l~~~l~~E~~~~~~y~~~i~~A~~~~D~~t~~~L~~il~eEe~h~~~l~~~l~~  161 (182)
T 3fvb_A           98 --------------LRI--GQNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFDELLADEEGHIDFLETQLDL  161 (182)
T ss_dssp             --------------CCC--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          111  267888999999999999999998654   4578899999999999999999999998876


Q ss_pred             hh
Q 037861          166 KA  167 (273)
Q Consensus       166 ~~  167 (273)
                      ..
T Consensus       162 i~  163 (182)
T 3fvb_A          162 LA  163 (182)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=93.64  E-value=0.16  Score=41.58  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV   74 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL   74 (273)
                      .++.++|..|+..|.--..||...+..            .-++.++.++..|+.+|..|...|++.+
T Consensus        99 ~~~~~~l~~ai~~E~~a~~~Y~~~a~~------------~~d~~~k~l~~~la~eE~~H~~~l~~~~  153 (157)
T 1vjx_A           99 LTLKEVLDIAISVEKDSIILYYELKDG------------LVNSDAQKTVKKIIDQEKEHLRKLLEMK  153 (157)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH------------CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998532            2478999999999999999999998765

>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}

Probab=92.91  E-value=2.3  Score=34.10  Aligned_cols=138  Identities=17%  Similarity=0.162  Sum_probs=96.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-+|+.|+-....|.....-.  ..      .++ ..+...+.+.+.+|..|...|-.-+. -..+|....  ..|
T Consensus        19 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~ee~~Had~lae~i~~lGg~p~~~~--~~~   87 (170)
T 2vzb_A           19 IDQLNAALSEEWLAYYQYWVGALVV--EG------AMR-ADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDP--KKW   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC--BS------TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCG--GGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--cC------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCH--HHH
Confidence            6789999999999999888764321  00      112 46778899999999999998877654 112344332  122


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCC--CHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQ--DAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~--~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                      ..   .+. .+-.|+-+ + +....|..+.-.|.-.+..|.-.+....  |+......-.|+..|-.|..+++.++..
T Consensus        88 ~~---~~~-~~~~~~~~-~-~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~  159 (170)
T 2vzb_A           88 FE---LAR-CKYDSPTA-F-DSVSLLNQNVSSERCAILRYQEIANFTNGKDYTTCDIAKHILAEEEEHEQDLQDYLTD  159 (170)
T ss_dssp             HH---HCS-SCCCCCCS-C-BHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH---hhc-CCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21   111 11011211 3 4788899999999999999998876654  7778888889999999999999998875

>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1

Probab=92.34  E-value=3.3  Score=32.46  Aligned_cols=131  Identities=10%  Similarity=0.096  Sum_probs=89.1

Q ss_pred             hhhhhhHHHHHH---HHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861           11 VDLLEFPLNLEY---LEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA   86 (273)
Q Consensus        11 ~diLNFALnLEy---LEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~   86 (273)
                      ++.||=.|+-|+   +-..-|.+-+.|.++            +.+...+.+.+.+|..|+..|-.-|- -..+|..... 
T Consensus         3 ~~~Ln~~la~e~~~~~~~~~~hw~v~g~~f------------~~l~~~~~~~~~ee~~had~laeri~~lGg~p~~~~~-   69 (142)
T 1ji5_A            3 IEVLNKQVADWSVLFTKLHNFHWYVKGPQF------------FTLHEKFEELYTESATHIDEIAERILAIGGKPVATMK-   69 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSTTH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-
Confidence            467999999995   333334443334332            56788899999999999999987754 2233443221 


Q ss_pred             chHHHHHHHhcCCCCC-CCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861           87 GSFAKVIDKAFGKPLN-PPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTL  162 (273)
Q Consensus        87 ~~F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~l  162 (273)
                       .|.+.   +   .+. |+-+ + +....+....--|...+..|.-+....   .|+......-.|+.-|-.|.-++++.
T Consensus        70 -~~~~~---s---~i~~~~~~-~-~~~e~l~~~l~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~e~ek~~w~l~~~  140 (142)
T 1ji5_A           70 -EYLEI---S---SIQEAAYG-E-TAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLLGIYTELEKHAWMLRAF  140 (142)
T ss_dssp             -HHHHH---C---CCCCCCTT-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHhh---C---CCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             22221   1   122 2233 4 788888888888888888888776654   67788888889999999999888877


Q ss_pred             H
Q 037861          163 L  163 (273)
Q Consensus       163 L  163 (273)
                      |
T Consensus       141 l  141 (142)
T 1ji5_A          141 L  141 (142)
T ss_dssp             H
T ss_pred             c
Confidence            6

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=91.66  E-value=0.35  Score=39.94  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=47.7

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK   75 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg   75 (273)
                      ++.++|..|+..|.--.+||...+.-            .-++.+++++.+|+.+|..|.+.|++.+.
T Consensus       105 ~~~~~L~~ai~~E~~a~~~Y~~~a~~------------~~d~~~r~l~~~ia~eE~~H~~~l~~~l~  159 (175)
T 2fzf_A          105 DIIDLIRWAMKAEEIAAEFYLKLEEM------------VKEEEKKRLMRYLADMERGHYYTLRAEYE  159 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT------------SCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999998532            13689999999999999999999998764

>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1

Probab=90.80  E-value=4.1  Score=32.38  Aligned_cols=131  Identities=9%  Similarity=0.019  Sum_probs=89.2

Q ss_pred             hhhhhhHHHHHH---HHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861           11 VDLLEFPLNLEY---LEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA   86 (273)
Q Consensus        11 ~diLNFALnLEy---LEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~   86 (273)
                      ++.||=.|+-|+   +-..=|.+-+.|.++            ..+...+.+.+.+|..|+..|-.-|- -...|..... 
T Consensus        10 ~~~LN~~la~e~~~~~~~~~~hw~v~g~~f------------~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~-   76 (149)
T 1n1q_A           10 AVLLNRQVANWVVLYVKLHNFHWNVNGPNF------------FTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLA-   76 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSTTH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHH-
T ss_pred             HHHHHHHHHHHHHHHHHHhccchheeCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-
Confidence            578999999994   444444444444443            46778899999999999999987654 2223433321 


Q ss_pred             chHHHHHHHhcCCCCCC-CCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861           87 GSFAKVIDKAFGKPLNP-PLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTL  162 (273)
Q Consensus        87 ~~F~~~~~~A~g~~l~p-~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~l  162 (273)
                       .|.+.      ..+.+ +-+ + +....+....--|...+..|.-+....   .|+......-.|+.-+-.|.-++|+.
T Consensus        77 -~~~~~------s~i~~~~~~-~-~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~e~ek~~w~l~~~  147 (149)
T 1n1q_A           77 -ASLEE------ASIKEATGG-E-SAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLDAIEAGLEKHVWMLEAF  147 (149)
T ss_dssp             -HHHHH------CCSCCCCSC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHhH------CCCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             22221      12222 222 4 788888888888888888888776544   47778888889999999999888887


Q ss_pred             H
Q 037861          163 L  163 (273)
Q Consensus       163 L  163 (273)
                      |
T Consensus       148 l  148 (149)
T 1n1q_A          148 L  148 (149)
T ss_dssp             H
T ss_pred             c
Confidence            6

>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1

Probab=89.12  E-value=6.6  Score=30.92  Aligned_cols=132  Identities=8%  Similarity=0.024  Sum_probs=87.7

Q ss_pred             hhhhhhHHHHHH---HHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861           11 VDLLEFPLNLEY---LEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA   86 (273)
Q Consensus        11 ~diLNFALnLEy---LEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~   86 (273)
                      ++.||=.|+-||   +-..=|.+-+.|.++            ..+...+.+.+.+|..|+..|-.-|- -...|..... 
T Consensus         7 ~~~LN~~la~~~~~~~~~~~~hw~v~g~~f------------~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~-   73 (146)
T 1jig_A            7 VEVLNKQVANWNVLYVKLHNYHWYVTGPHF------------FTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMK-   73 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSTTH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHH-
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccCcCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-
Confidence            578999999994   444444444444443            46778899999999999999987654 2223433221 


Q ss_pred             chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861           87 GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLL  163 (273)
Q Consensus        87 ~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL  163 (273)
                       .|.+.      ..+.++-..+ +....+....--|...+..|.-+....   .|+......-.|+.-+-.|.-++|+.|
T Consensus        74 -~~~~~------s~i~~~~~~~-~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~e~ek~~w~l~~~l  145 (146)
T 1jig_A           74 -EYLAT------SSVNEGTSKE-SAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLLAIHTTLEQHVWMLSAFL  145 (146)
T ss_dssp             -HHHHH------CCSCCCCSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHhH------CcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             22221      1222221124 777888888777888888887766543   477788888889988888988888765

>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1

Probab=87.34  E-value=9.3  Score=31.26  Aligned_cols=132  Identities=13%  Similarity=0.130  Sum_probs=91.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      .+.||=++|.|.-...-|+.-+.=  .+.      -++ +.+...+.+.+.+|..|...|-+-+- --.+|.+.      
T Consensus         7 ~~~Ln~~i~~El~A~~~Yl~~a~~--~~~------~gl-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gG~~~l~------   71 (167)
T 1krq_A            7 VKLLNEQINKEMYAANLYLSMSSW--CYE------NSL-DGAGAFLFAHASEESDHAKKLITYLNETDSHVELQ------   71 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhH------cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC------
Confidence            567999999998777777654211  011      123 56778899999999999988887764 22234332      


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                .+.+|-+.|.|....|..+...|.-....|.-.....   .|+......-.++.-|..|..+++.++...
T Consensus        72 ----------~i~~p~~~~~~~~e~l~~al~~E~~~~~~~~~l~~~a~~~~D~~~~~~l~~~l~Eq~e~~~~l~~~l~~l  141 (167)
T 1krq_A           72 ----------EVKQPEQNFKSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKI  141 (167)
T ss_dssp             ----------CCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1122345578899999999999999988888765544   466666666667777777888888877654


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      .
T Consensus       142 ~  142 (167)
T 1krq_A          142 K  142 (167)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A

Probab=86.46  E-value=13  Score=30.87  Aligned_cols=132  Identities=11%  Similarity=0.067  Sum_probs=92.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=.|+.|+-....|..-..=+  +.      .++ +.+...+.+.+.+|..|+..|-.-+. --.+|.+  +    
T Consensus        12 ~~~LN~~la~El~a~~~Yl~~a~~~--~~------~gf-~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~--~----   76 (189)
T 3oj5_A           12 HALMQEQIHNEFTAAQQYVAIAVYF--DS------EDL-PQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEI--P----   76 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC--C----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--cc------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec--C----
Confidence            6789999999987666666432100  00      122 56888999999999999988876653 1122332  1    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                ++.++-..+.+....|..+.-.|......|.-...   ...|+......-.|+..|-.|...++.+|...
T Consensus        77 ----------~i~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l~~~l~eqe~~~~~l~~~l~~l  146 (189)
T 3oj5_A           77 ----------GVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVA  146 (189)
T ss_dssp             ----------CBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11122233567888888888888888888877544   34678888888899999999999999998765


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      .
T Consensus       147 ~  147 (189)
T 3oj5_A          147 D  147 (189)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}

Probab=85.79  E-value=5.6  Score=32.50  Aligned_cols=124  Identities=13%  Similarity=0.057  Sum_probs=89.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcccCCcchHH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFA   90 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~id~s~~~F~   90 (273)
                      .+-|+=|+.-|.-+..-|+.-+.-.  ++      -++ +.+.+++.+++.+|..|...+-+.|+.++.|...+      
T Consensus        14 ~~nL~~afagEs~A~~~Y~~~A~~A--~~------eG~-~~iA~~F~~~A~~E~~HA~~~~~~L~~~~~p~~~~------   78 (144)
T 4di0_A           14 EENLKYAFAGESQANRRYLYFASKA--DV------EGQ-NDIAALFRSTAEGETGHAHGHLEYLEAVGDPATGL------   78 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------HTC-HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCTTTSC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCC------
Confidence            5678999999998888887543110  00      123 67999999999999999998888887554443111      


Q ss_pred             HHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhh-hhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           91 KVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGL-TGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        91 ~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGv-sAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                      |..+...-|..+..=|.--. ..|...+..   -..+.+...--.|.-+|.+|....+.+|..
T Consensus        79 ----------------~~~~T~enL~~A~~GE~~e~~~~Y~~~a~~A~~eG~~~ia~~f~~~a~~E~~Ha~~~~~~l~~  141 (144)
T 4di0_A           79 ----------------PFGTSRQNLQSAIAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDG  141 (144)
T ss_dssp             ----------------CCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----------------CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                            23455666777777777775 467544433   557778888889999999999999988864

>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0

Probab=85.67  E-value=13  Score=30.14  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=91.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      .+.||=.|+.|+-....|..-+.=.  +.      .++ +.+...+.+.+.+|..|...|-.-+. -..+|.+  +    
T Consensus         7 ~~~Ln~~l~~El~a~~~Yl~~a~~~--~~------~~~-~~l~~~f~~~a~ee~~had~laeri~~lGg~p~~--~----   71 (174)
T 2jd6_0            7 LKALNDQLNRELYSAYLYFAMAAYF--ED------LGL-EGFANWMKAQAEEEIGHALRFYNYIYDRNGRVEL--D----   71 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC--C----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hh------CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--C----
Confidence            5689999999987666665442110  10      122 56888999999999999988877654 1122332  1    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                .+.++-+.+.+....|..+.-.|.-....|.-...   ...|+......-.|+..|-.|..+++.++...
T Consensus        72 ----------~i~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~l~eq~e~~~~l~~~l~~l  141 (174)
T 2jd6_0           72 ----------EIPKPPKEWESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFLEWFINEQVEEEASVKKILDKL  141 (174)
T ss_dssp             ----------CBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11122233567888888888888888888877543   34678888888889999999999999988764


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      .
T Consensus       142 ~  142 (174)
T 2jd6_0          142 K  142 (174)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}

Probab=85.42  E-value=11  Score=31.53  Aligned_cols=137  Identities=11%  Similarity=-0.040  Sum_probs=95.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=+|+.|+.-..-|.....-.  ..      ..+ ..+...+.+.+.+|..|+..|-.-|- -...|...+.  .|
T Consensus        30 i~~LN~~La~e~~a~~~y~~~hw~v--~g------~~f-~~lh~~~~~~~~ee~~had~laErI~~LGg~p~~~~~--~~   98 (192)
T 2vxx_A           30 CEGMNRLLASFQALYLQYQKHHFVV--EG------AEF-YPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVAGFQ--QL   98 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC--CS------TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHH--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--cC------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHH--HH
Confidence            6789999999998777776653221  00      011 46778899999999999999987765 2233443321  22


Q ss_pred             HHHHHHhcCCCCCCCCCC-CCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           90 AKVIDKAFGKPLNPPLDP-YANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdP-y~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                      .+.      ..+.+ ... +.+....|....--|...+..|.-+....   .|+....+.-.|+.-|-.|.-++++.|.+
T Consensus        99 ~~~------s~i~e-~~~~~~~~~e~l~~~l~~e~~~i~~~~~~i~~a~~~~D~~T~~lL~~~l~eeEkh~w~L~~~L~~  171 (192)
T 2vxx_A           99 AAL------CCFTP-EPEGAFNCRQMLSNDLQAEQAIIGVLRQQATQAESLGDRATAYLYDQILLKTEERAYHIGHFLAN  171 (192)
T ss_dssp             HHH------CSSCC-CCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHH------CcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            221      12221 122 46788888888888888889998877644   47778888889999999999999998863

>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1

Probab=84.97  E-value=14  Score=29.99  Aligned_cols=132  Identities=10%  Similarity=0.117  Sum_probs=89.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      .+.||=.+|.|+-...-|+.-+.=  .+.      -++ +.+...+.+.+.+|..|...|-+-+. --.+|.+.-     
T Consensus         7 ~~~LN~~i~~El~A~~~Yl~~a~~--~~~------~gl-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~l~~-----   72 (165)
T 1eum_A            7 IEKLNEQMNLELYSSLLYQQMSAW--CSY------HTF-EGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINT-----   72 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHH------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC-----
Confidence            467999999998777766644211  011      123 56778899999999999988877664 223344321     


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                 +.+|-..|.+....|..+...|.--...|.-....   -.|+......-.++.-|..|..+++.++...
T Consensus        73 -----------i~~p~~~~~~~~e~l~~al~~E~~~~~~~~~l~~~a~~~~D~~~~~fl~~~l~eq~e~~~~l~~~l~~l  141 (165)
T 1eum_A           73 -----------VESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKL  141 (165)
T ss_dssp             -----------BCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       11233456788999999999999888888766544   3466666666677777888888887777654


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      +
T Consensus       142 ~  142 (165)
T 1eum_A          142 S  142 (165)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=84.69  E-value=17  Score=30.72  Aligned_cols=132  Identities=12%  Similarity=-0.040  Sum_probs=92.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcccCCcchHH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFA   90 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~id~s~~~F~   90 (273)
                      .+.||=+++.|.-.+.-|+.-+.-.  ++      .++ +.+..++.+.+.+|..|...+-+.|. -..|.+.-.     
T Consensus        10 ~~~Ln~a~~~E~~A~~~Yl~~A~~a--~~------~G~-~~iA~~f~~~A~eE~~HA~~~~~~l~-gg~~~i~~~-----   74 (191)
T 1lko_A           10 EKNILTAFAGESQARNRYNYFGGQA--KK------DGF-VQISDIFAETADQEREHAKRLFKFLE-GGDLEIVAA-----   74 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHCC-SSCCCCCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccccCc-----
Confidence            5679999999999998888653210  00      233 66889999999999999999988883 122333211     


Q ss_pred             HHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhh-hhccc---cccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           91 KVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLT-GYVGA---NPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        91 ~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvs-AY~Ga---ap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                  .|...+.+...-|..+.--|.--++ .|...   +..-.++.+...---|+.+|..|....+.+|...
T Consensus        75 ------------~p~~~~~s~~e~l~~al~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l  142 (191)
T 1lko_A           75 ------------FPAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNI  142 (191)
T ss_dssp             ------------CCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                        1234467888888888888844443 36544   3444567777777789999999999999998765


Q ss_pred             hcc
Q 037861          167 ANE  169 (273)
Q Consensus       167 ~~~  169 (273)
                      ...
T Consensus       143 ~~~  145 (191)
T 1lko_A          143 KEG  145 (191)
T ss_dssp             HHT
T ss_pred             hcc
Confidence            443

>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}

Probab=83.68  E-value=15  Score=30.07  Aligned_cols=119  Identities=10%  Similarity=-0.039  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcc--cCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccc
Q 037861           48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLL--DLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPY  123 (273)
Q Consensus        48 l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~i--d~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~  123 (273)
                      -|+.++.++++.-.+-..|++.|++.+.  ++|-|.-  +....+       .-..   |+-.|| +|...+..-...--
T Consensus        44 ~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g~p~P~~~~~~~~~~-------~~dv---~~~ap~-~D~~i~~~~l~~~k  112 (171)
T 2rbd_A           44 GDEDLKNLIDEAIQAMQDENHQLEELLRSNGVGLPPAPPDRPAAR-------LDDI---PVGARF-NDPEISATISMDVA  112 (171)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCCC-------GGGS---CGGGCC-CHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCcccccCc-------cccC---CCCCCc-cHHHHHHHHHHHHH
Confidence            5899999999999999999999999987  5555431  100000       0000   011232 45555555556677


Q ss_pred             hhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhhcccCCCCCcc
Q 037861          124 VGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIP  177 (273)
Q Consensus       124 VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~t  177 (273)
                      .|+..|..++....+++++..-...+.-+..+.--+-.++.+++--.++|+-.+
T Consensus       113 ~~l~~~s~a~~es~r~Dir~~f~~~~~~~~~~~~~i~~~m~~KGw~~~pP~~~~  166 (171)
T 2rbd_A          113 KGLVTCSQIIGQSIREDVALMFSQFHMAKVQFGGKMLKLNKNKGWLIPPPLHSD  166 (171)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCBCCC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccC
Confidence            899999999999999999999998888877777766667777776667776443

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=82.74  E-value=2.7  Score=32.66  Aligned_cols=59  Identities=12%  Similarity=0.097  Sum_probs=48.5

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK   75 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg   75 (273)
                      .+..++|..++..|.--..+|....-     ...    ..-|+.+++++..+..+|..|+..|++.|+
T Consensus        84 ~~~~e~l~~~l~~E~~~~~~~~~~~~-----~a~----~~~D~~t~~~l~~~~~eee~h~~~l~~~l~  142 (149)
T 2qqy_A           84 EDVREMLEYARQSEYETIKRYEKRKE-----QAA----NLNMTELVVKLEDMIADETNHMEELDRLLN  142 (149)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35679999999999999999988732     100    124789999999999999999999999886

>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A

Probab=80.42  E-value=25  Score=29.65  Aligned_cols=132  Identities=11%  Similarity=0.063  Sum_probs=93.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-.+|+|.-...-|+.-+.=  .+.      -++ +.+...+.+.+..|..|..-|-+-+- --.+|.+.      
T Consensus        12 ~~~LN~qi~~El~As~~Yl~~a~~--f~~------~~l-~g~a~~f~~~A~EE~~HA~~l~~~i~~rGG~~~l~------   76 (189)
T 3uno_A           12 HALMQEQIHNEFTAAQQYVAIAVY--FDS------EDL-PQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIP------   76 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--Hcc------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC------
Confidence            678999999998777766543210  111      123 55677888999999999998776653 22333321      


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                .+.+|-+-|.+....|..+..+|.--...|.....+.   .|+......--|+.-|-.|-.+++.+|...
T Consensus        77 ----------~i~~p~~~~~s~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~fL~EQve~~~~l~~~l~~l  146 (189)
T 3uno_A           77 ----------GVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVA  146 (189)
T ss_dssp             ----------CBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1112334467889999999999999888888766553   577777777789999999999999988765


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      +
T Consensus       147 ~  147 (189)
T 3uno_A          147 D  147 (189)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A

Probab=80.13  E-value=13  Score=34.39  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhc----CCCCCccc------CCc--ch----HHHHHHHhcCCCC---CC---CCCC-
Q 037861           51 FTNDVVLQFVWQEVGHLRAIKNTVK----GFPRPLLD------LSA--GS----FAKVIDKAFGKPL---NP---PLDP-  107 (273)
Q Consensus        51 ~v~~~~~eia~~E~~HV~~L~~aLg----a~~~P~id------~s~--~~----F~~~~~~A~g~~l---~p---~FdP-  107 (273)
                      .+++++..|+..|.+|+..|-..+.    +.+...+.      -..  .+    +..-. ...|...   ++   ||.+ 
T Consensus        58 ~~~dLL~dIatEEL~HlEmvat~I~~L~~Ga~~~~~~~~~~~~~~p~~~a~~~~~~~~~-i~~g~g~~p~ds~G~pWta~  136 (302)
T 2v8t_A           58 PYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPASTPLGFAKDVRNAAHF-IAGGANSLVMGAMGEHWNGE  136 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCCCCCCCCGGGCTTGGGGGSSCSHHH-HTSSSCCCSBCTTSCBCBGG
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCChhhhhcccccccchHHHhhhcCCcHHH-hhcCCCCCccCCCCCCCCcc
Confidence            7899999999999999999987753    32221111      000  00    00000 0011111   11   1222 


Q ss_pred             C----CChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861          108 Y----ANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus       108 y----~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                      |    .|...-|..-...|.-+..-|.=....+.|+.++.+..-|+.-|-.|.-..+.+|.+.
T Consensus       137 Yv~~~Gdl~aDL~~NiaAE~~Ar~~Y~rL~~~tdDp~vkd~L~fLi~RE~~H~~~f~~ALe~l  199 (302)
T 2v8t_A          137 YVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESL  199 (302)
T ss_dssp             GCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2    2566777778888999999999999999999999999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d2ib0a1	142	a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {M	0.004

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 17/160 (10%), Positives = 40/160 (25%), Gaps = 37/160 (23%)

Query: 9   SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLR 68
           +D   L   L +E+  A  + +G            ++A   P  N +V   + Q      
Sbjct: 5   ADNAALCDALAVEH--ATIYGYGI-----------VSALSPPGVNFLVADALKQHRHRRD 51

Query: 69  AIKNTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPP-----LDPYANSINYLIASYLNPY 123
                                  ++                    +++ +    +     
Sbjct: 52  D-------------------VIVMLSARGVTAPIAAAGYQLPMQVSSAADAARLAVRMEN 92

Query: 124 VGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLL 163
            G T +     + + A  +  A+  L   +        +L
Sbjct: 93  DGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVL 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d2ib0a1	142	Hypothetical protein Rv2844 {Mycobacterium tubercu	99.77
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	98.73
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	98.7
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	98.58
d1nf4a_	169	Bacterioferritin (cytochrome b1) {Desulfovibrio de	96.84
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	96.84
d2fkza1	154	Bacterioferritin (cytochrome b1) {Azotobacter vine	96.48
d1jgca_	160	Bacterioferritin (cytochrome b1) {Rhodobacter caps	96.11
d1lkoa1	146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	95.97
d2htna1	158	Bacterioferritin (cytochrome b1) {Escherichia coli	95.89
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	95.16
d2ib0a1	142	Hypothetical protein Rv2844 {Mycobacterium tubercu	95.09
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	93.92
d1yuza1	135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	92.73
d1j30a_	141	Hypothetical rubrerythrin {Archaeon Sulfolobus tok	91.94

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=7.6e-19  Score=142.83  Aligned_cols=133  Identities=13%  Similarity=-0.020  Sum_probs=110.4

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA   86 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~   86 (273)
                      .+|.++||+||.+||  +.+|.+++..           +.+++.+++++++++.||..|+.+|++.+. ....|......
T Consensus         4 ~~d~~~L~~AL~~E~--aaiy~Y~~a~-----------~~~~~~~~~~~~~~~~~e~~H~~~L~~~i~~lgg~p~~~~~~   70 (142)
T d2ib0a1           4 SADNAALCDALAVEH--ATIYGYGIVS-----------ALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAG   70 (142)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHHHHHH-----------HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSS
T ss_pred             chHHHHHHHHHHHHH--HHHHHHHHHh-----------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc
Confidence            469999999999999  5588776421           357899999999999999999999998886 33333322111


Q ss_pred             chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           87 GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        87 ~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                  +.   .-++++|..++|..+..+|..++.+|.+++..++|+++++++++||++||+|++++|..+...
T Consensus        71 ------------~~---~~~~~td~~~~l~~a~~~E~~a~~~Y~~~~~~~~d~~~r~la~~il~~ea~ha~~~r~~~~~~  135 (142)
T d2ib0a1          71 ------------YQ---LPMQVSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVLGAW  135 (142)
T ss_dssp             ------------CC---CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------cc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                        11   124678999999999999999999999999999999999999999999999999999999986


Q ss_pred             hc
Q 037861          167 AN  168 (273)
Q Consensus       167 ~~  168 (273)
                      +.
T Consensus       136 p~  137 (142)
T d2ib0a1         136 PI  137 (142)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=98.73  E-value=6e-08  Score=76.27  Aligned_cols=143  Identities=16%  Similarity=0.067  Sum_probs=106.7

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCc---ccCC
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPL---LDLS   85 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~---id~s   85 (273)
                      |-.++||.|+.+|.....||...+.-.  +       ..-.+.++.++.+++.+|..|.+.|.+.+.....|.   .+..
T Consensus         2 t~~e~L~~Ai~~E~~a~~~Y~~~a~~~--~-------~~~~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~   72 (152)
T d2oh3a1           2 TLAEFLAHAIALETEAAERYVELADMM--E-------AHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYR   72 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGGTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH--h-------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhc
Confidence            457899999999999999998764211  0       112478999999999999999999998877222111   1111


Q ss_pred             cchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           86 AGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        86 ~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                      . .|.      .-.......+...+....|..|...|..++..|...+..+.|+.++.+...|...|.+|..+++.++.+
T Consensus        73 ~-~~~------~~~~~~~~~~~~~~~~~~l~~Al~~E~~a~~~Y~~~a~~~~d~~~r~~~~~l~~~E~~H~~~l~~~l~~  145 (152)
T d2oh3a1          73 W-KTP------PEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEK  145 (152)
T ss_dssp             C-CCC------CCSSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-ccc------hhHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0 000      000111123445578889999999999999999999999999999999999999999999999999887


Q ss_pred             hh
Q 037861          166 KA  167 (273)
Q Consensus       166 ~~  167 (273)
                      -.
T Consensus       146 ~~  147 (152)
T d2oh3a1         146 TP  147 (152)
T ss_dssp             SC
T ss_pred             cC
Confidence            54

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.70  E-value=6e-08  Score=76.40  Aligned_cols=134  Identities=12%  Similarity=0.080  Sum_probs=103.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---CCCCCccc---C
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK---GFPRPLLD---L   84 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a~~~P~id---~   84 (273)
                      .++|++|+..|+....||...+...            -++.+++++.+++.+|..|.+.+.+.+.   +-+.|...   .
T Consensus        13 ~e~l~~ai~~E~~a~~~Y~~~a~~~------------~~~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~~~~~~~~   80 (158)
T d2fzfa1          13 EELLGMAIKAEIGAREFYKSLAEKI------------KIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHI   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSC------------CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC------------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccchhhhh
Confidence            5789999999999999999875321            2578999999999999999999998876   22222211   1


Q ss_pred             CcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861           85 SAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLY  164 (273)
Q Consensus        85 s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~  164 (273)
                      ...          .........+..+....|..+...|..++..|...+..+.|+..+++.-.|...|.+|..+++.++.
T Consensus        81 ~~~----------~~~~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~la~~~~d~~~~~l~~~i~~~E~~H~~~l~~~~d  150 (158)
T d2fzfa1          81 GPE----------LQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYE  150 (158)
T ss_dssp             SCC----------CCCCCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh----------hhhhHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            100          0000011233445678888999999999999999999999999999999999999999999998776


Q ss_pred             hh
Q 037861          165 QK  166 (273)
Q Consensus       165 ~~  166 (273)
                      ..
T Consensus       151 ~l  152 (158)
T d2fzfa1         151 LL  152 (158)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=4.1e-07  Score=71.37  Aligned_cols=139  Identities=13%  Similarity=0.025  Sum_probs=103.8

Q ss_pred             chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcc-cCCcc
Q 037861           10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLL-DLSAG   87 (273)
Q Consensus        10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~i-d~s~~   87 (273)
                      -.++|++|+.+|.....||...+.             ..++.+++++.+++.+|..|...|++.+. ..+.|.. .+...
T Consensus         7 ~~e~l~~Ai~~E~~~~~~Y~~~a~-------------~~~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~   73 (149)
T d1vjxa_           7 VSDILTVAIRLEEEGERFYRELSE-------------HFNGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGY   73 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT-------------SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBCCSB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            368999999999999999998742             23567899999999999999999998876 2111100 00000


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           88 SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        88 ~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                      ....    ..-........+-.+....|..|..+|..++.-|...+..++|+.++.+.-.|...|.+|...++.+..+
T Consensus        74 ~~~~----~~~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~l~~~~~d~~~r~~~~~i~~eE~~H~~~l~~l~~~  147 (149)
T d1vjxa_          74 AFYE----VFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRE  147 (149)
T ss_dssp             CCCC----CCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhh----hhhhhHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            0000    0000001113445678889999999999999999999999999999999999999999999999988765

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=96.84  E-value=0.0055  Score=48.81  Aligned_cols=131  Identities=9%  Similarity=0.008  Sum_probs=99.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=+|+.|+--...|..-+.-.  +.      ..+ +.+...+++.+..|..|...|-.-+. -...|.+....   
T Consensus        10 i~~Ln~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~---   77 (169)
T d1nf4a_          10 IEVLNKARAMELHAIHQYMNQHYSL--DD------MDY-GELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEG---   77 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------HTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSS---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hc------cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccccc---
Confidence            6789999999999998887754321  10      112 56888999999999999999987765 22234332211   


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                    +.....+..+.|..+.-.|.-.+..|...+..   ..|+......-.|+..|-.|..++..+|...
T Consensus        78 --------------~~~~~~~~~e~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~il~eE~~H~~~~e~~l~~i  143 (169)
T d1nf4a_          78 --------------KVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHI  143 (169)
T ss_dssp             --------------CCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          11224678899999999999999999876654   4589999999999999999999999998875


Q ss_pred             h
Q 037861          167 A  167 (273)
Q Consensus       167 ~  167 (273)
                      .
T Consensus       144 ~  144 (169)
T d1nf4a_         144 K  144 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=96.84  E-value=0.0011  Score=51.08  Aligned_cols=62  Identities=18%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcc
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLL   82 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~i   82 (273)
                      ++.++|+.|+-.|.--..||...+..            .-|+.++.++.+|+.+|..|+..|+..+.-+++|.+
T Consensus        90 ~~~~~l~~Al~~E~~a~~~Y~~~a~~------------~~d~~~r~~~~~l~~~E~~H~~~l~~~l~~~~~p~~  151 (152)
T d2oh3a1          90 TPYHALRYARDNEIRGMEYYKEAAAN------------SADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSI  151 (152)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            56889999999999999999988531            247999999999999999999999999998888864

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.48  E-value=0.018  Score=44.66  Aligned_cols=130  Identities=15%  Similarity=0.057  Sum_probs=99.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=+|+.|+-...-|..-+.-.  +.      .++ +.+.+.+++.+.+|..|..-|...+. -...|.+.-     
T Consensus         8 i~~Ln~~l~~E~~A~~~Y~~~a~~~--~~------~~~-~~la~~f~~~a~eE~~Ha~~l~~~i~~lGg~p~~~~-----   73 (154)
T d2fkza1           8 IQHLNKILGNELIAINQYFLHARMY--ED------WGL-EKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQE-----   73 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------cCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc-----
Confidence            7899999999999999998764321  10      112 56778899999999999999988765 222343321     


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                 +. +.....+....+..+.-.|...+..|.-...   ...|+......-.|+..|-.|..++++.|...
T Consensus        74 -----------~~-~~~~~~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~~il~eE~~h~~~l~~~L~~~  141 (154)
T d2fkza1          74 -----------LG-KLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLI  141 (154)
T ss_dssp             -----------CC-CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------cc-ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       11 2334678899999999999999988885544   47788899999999999999999999988754

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.11  E-value=0.061  Score=42.11  Aligned_cols=130  Identities=17%  Similarity=0.114  Sum_probs=99.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||-+|+.|+--...|.+-+.-.  +.      ..+ +.+...+.+.+.+|..|...|..-+. -...|.+...    
T Consensus         8 i~~LN~~l~~E~~a~~~Y~~~a~~~--~~------~~~-~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~----   74 (160)
T d1jgca_           8 IEFLNAALRSELTAISQYWVHFRLQ--ED------WGL-AKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKL----   74 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hc------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc----
Confidence            7899999999999888888775311  00      112 56778899999999999999987764 2224443321    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                  . +...+.|....|..+.-.|.-.+..|...+..   ..|+......=.|+.-|-.|..++.+.|...
T Consensus        75 ------------~-~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h~~~l~~~l~~i  141 (160)
T d1jgca_          75 ------------D-PLRIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLY  141 (160)
T ss_dssp             ------------C-CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------c-cccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1 23456889999999999999999999887776   4588888888899999999999999887654

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.97  E-value=0.066  Score=41.10  Aligned_cols=134  Identities=9%  Similarity=-0.067  Sum_probs=99.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      .+-||-|+.-|+....-|+.-+.-.  +.      .++ +.+...+.+++.+|..|...|...|. ..+.|.....    
T Consensus         9 ~~~L~~a~~~E~~A~~~Y~~~A~~a--~~------~g~-~~ia~~f~~~A~eE~~HA~~l~~~l~~lg~~p~~~~~----   75 (146)
T d1lkoa1           9 EKNILTAFAGESQARNRYNYFGGQA--KK------DGF-VQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFP----   75 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCCCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCC----
Confidence            5779999999999988887653210  00      112 67889999999999999999999876 3344443221    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                    +-.-..+..+.+..+..-|.-.+..|.-.+.   ...++.+....-.|+..|-.|...++.+|...
T Consensus        76 --------------~~~~~~~~~~l~~~~~~~e~e~~~~y~~~~~~a~~~~D~~~~~~f~~i~~~E~~H~~~f~~~l~~l  141 (146)
T d1lkoa1          76 --------------AGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNI  141 (146)
T ss_dssp             --------------CCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          1112356678888888888778888876554   45788899999999999999999999999887


Q ss_pred             hcccC
Q 037861          167 ANEKV  171 (273)
Q Consensus       167 ~~~~v  171 (273)
                      .+.+|
T Consensus       142 ~~~~~  146 (146)
T d1lkoa1         142 KEGRV  146 (146)
T ss_dssp             HHTCS
T ss_pred             HcCCC
Confidence            66543

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.035  Score=43.17  Aligned_cols=130  Identities=17%  Similarity=0.063  Sum_probs=97.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      ++.||=+++.|+--...|+..+.=.  ..      ..+ ..+...+.+.+.+|..|...|-.-|. -...|.++..    
T Consensus         8 i~~Ln~~l~~E~~A~~~Y~~~a~~~--~~------~~~-~~la~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~----   74 (158)
T d2htna1           8 INYLNKLLGNELVAINQYFLHARMF--KN------WGL-KRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDL----   74 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--Hc------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc----
Confidence            7889999999999999998764311  00      122 56778899999999999999987765 1223333321    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK  166 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~  166 (273)
                                   ++...+.+....|..+.-.|...+..|.-....   ..|+......=.|+..|-.|..+++..|...
T Consensus        75 -------------~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~  141 (158)
T d2htna1          75 -------------GKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLI  141 (158)
T ss_dssp             -------------CCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         112345678899999999999989998666555   4588899999999999999999999988864

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.023  Score=43.21  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV   74 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL   74 (273)
                      .++.++|+.|+-.|..-..||...+..            ..++.+++++..|+.+|..|++.|++..
T Consensus        91 ~~~~~~l~~ai~~E~~a~~~Y~~l~~~------------~~d~~~r~~~~~i~~eE~~H~~~l~~l~  145 (149)
T d1vjxa_          91 LTLKEVLDIAISVEKDSIILYYELKDG------------LVNSDAQKTVKKIIDQEKEHLRKLLEMK  145 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH------------CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999987432            2579999999999999999999998754

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.09  E-value=0.022  Score=43.99  Aligned_cols=60  Identities=8%  Similarity=-0.056  Sum_probs=51.9

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCC
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRP   80 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P   80 (273)
                      ++.++|.+++.+|-.-..+|...+..            .-|+.++.++.+|..+|..|...+|..+|..|-|
T Consensus        79 d~~~~l~~a~~~E~~a~~~Y~~~~~~------------~~d~~~r~la~~il~~ea~ha~~~r~~~~~~p~~  138 (142)
T d2ib0a1          79 SAADAARLAVRMENDGATAWRAVVEH------------AETADDRVFASTALTESAVMATRWNRVLGAWPIT  138 (142)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHH------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            46789999999999999999988532            2478999999999999999999999999955544

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.92  E-value=0.055  Score=40.96  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861            9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV   74 (273)
Q Consensus         9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL   74 (273)
                      +..++|..|+-.|.....||...+..            ..|+.+++++..|+.+|..|+..|++.+
T Consensus        96 ~~~~~l~~a~~~E~~a~~~Y~~la~~------------~~d~~~~~l~~~i~~~E~~H~~~l~~~~  149 (158)
T d2fzfa1          96 DIIDLIRWAMKAEEIAAEFYLKLEEM------------VKEEEKKRLMRYLADMERGHYYTLRAEY  149 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT------------SCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHh------------cCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999988532            2579999999999999999999998765

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.73  E-value=0.43  Score=35.72  Aligned_cols=125  Identities=10%  Similarity=-0.064  Sum_probs=84.8

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861            8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA   86 (273)
Q Consensus         8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~   86 (273)
                      .+-++.||=|++.|+....-|+.-+.-.  +.      .++ +.+...+.+++..|..|...|-+-|. -...|.+....
T Consensus         5 ~~t~e~L~~a~~~E~~A~~~Yl~~A~~~--~~------~g~-~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~~~~~   75 (135)
T d1yuza1           5 GSTLENLKAAIAGETGAHAKYTAFAKAA--RE------QGY-EQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVA   75 (135)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hH------CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence            3458899999999999999887654210  00      112 67889999999999999988877765 11122221110


Q ss_pred             chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHH
Q 037861           87 GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAI  158 (273)
Q Consensus        87 ~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~  158 (273)
                                       ..-...+..+.+.+..--|.-.+..|...+...   .++.+....-.|+..|-.|+-.
T Consensus        76 -----------------~~~~~~~~~~L~~~~~~ee~e~~~~Y~~~~~~A~~~~d~~~~~~f~~i~~~E~~H~e~  133 (135)
T d1yuza1          76 -----------------APSAYSCDLNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAER  133 (135)
T ss_dssp             ------------------CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------cCcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence                             111234566666666655666777787766544   5888899999999999999864

>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical rubrerythrin
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=91.94  E-value=1.2  Score=33.24  Aligned_cols=126  Identities=11%  Similarity=0.051  Sum_probs=82.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861           11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF   89 (273)
Q Consensus        11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F   89 (273)
                      .+-||=|++-|+-...-|+.-+.-.  +.      .++ +.+...+.+++.+|..|...+-+.|. -...|.+.-.    
T Consensus         8 ~~~L~~a~~~E~~A~~~Y~~~a~~a--~~------~g~-~~iA~~f~~~A~eE~~HA~~~~~~i~~lg~~p~~~~~----   74 (141)
T d1j30a_           8 AENLKQGFIGESMANRRYLYFAKRA--DE------EGY-PEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDK----   74 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------HTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTTSC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HH------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCc----
Confidence            5789999999999988887663100  00      112 67888999999999999988887765 1112221100    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcc-chhh---hhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861           90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNP-YVGL---TGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ  165 (273)
Q Consensus        90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E-~VGv---sAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~  165 (273)
                                       |+.+...-|..+..-| .--+   ..|...+-...++.+....-.|+..|-.|..+++.+|.+
T Consensus        75 -----------------~~~~~~~~l~~~~~~e~~e~~~~y~~~~~~A~~e~d~~~~~~~~~i~~~E~~H~~~f~~~l~~  137 (141)
T d1j30a_          75 -----------------PIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQ  137 (141)
T ss_dssp             -----------------BCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             1112222222222212 2223   334556666889999999999999999999999999876


Q ss_pred             h
Q 037861          166 K  166 (273)
Q Consensus       166 ~  166 (273)
                      .
T Consensus       138 l  138 (141)
T d1j30a_         138 L  138 (141)
T ss_dssp             H
T ss_pred             H
Confidence            4