Citrus Sinensis ID: 037863
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 672 | 2.2.26 [Sep-21-2011] | |||||||
| Q6R3L0 | 673 | Metal-nicotianamine trans | yes | no | 0.988 | 0.986 | 0.697 | 0.0 | |
| Q2EF88 | 675 | Metal-nicotianamine trans | no | no | 0.988 | 0.983 | 0.68 | 0.0 | |
| Q6R3K9 | 664 | Metal-nicotianamine trans | no | no | 0.979 | 0.990 | 0.664 | 0.0 | |
| Q7XUJ2 | 684 | Probable metal-nicotianam | yes | no | 0.979 | 0.961 | 0.638 | 0.0 | |
| Q7XN54 | 675 | Probable metal-nicotianam | no | no | 0.977 | 0.973 | 0.619 | 0.0 | |
| Q6H3Z3 | 672 | Iron-phytosiderophore tra | no | no | 0.986 | 0.986 | 0.585 | 0.0 | |
| Q6H3Z6 | 674 | Metal-nicotianamine trans | no | no | 0.977 | 0.974 | 0.595 | 0.0 | |
| Q9AY27 | 682 | Iron-phytosiderophore tra | N/A | no | 0.980 | 0.966 | 0.587 | 0.0 | |
| Q9SHY2 | 688 | Probable metal-nicotianam | no | no | 0.991 | 0.968 | 0.546 | 0.0 | |
| Q5JQD7 | 717 | Probable metal-nicotianam | no | no | 0.950 | 0.891 | 0.554 | 0.0 |
| >sp|Q6R3L0|YSL1_ARATH Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/678 (69%), Positives = 576/678 (84%), Gaps = 14/678 (2%)
Query: 3 EEKEKKEIEREDAEEDDHVELS--------DPEGSNKRQQPWTKQITIRGLVVSILLGIV 54
E ++++ ++RE EE+D+ +LS + E S + +PWTKQIT+RG+ VSI++G+V
Sbjct: 2 EIEQRRIMKREGEEEEDNNQLSLQEEEPDTEEEMSGRTIEPWTKQITVRGVFVSIVIGVV 61
Query: 55 YSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAGYVTRPFTKQENTMIQTCAV 114
+SVI KLNLTTG+VP LN SAALLAF+ +++WTK+L+++G+V +PFT+QENTMIQT AV
Sbjct: 62 FSVIAQKLNLTTGIVPNLNSSAALLAFVFVQTWTKILKKSGFVAKPFTRQENTMIQTSAV 121
Query: 115 ACYSIAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFV 174
ACY IAVGGGF SYLLGL+ K Y LSG + EGNS +++KEPGLGWM YLFVVCF+GLFV
Sbjct: 122 ACYGIAVGGGFASYLLGLNHKTYVLSGVNLEGNSPKSVKEPGLGWMTAYLFVVCFIGLFV 181
Query: 175 LIPLRKIVIVDLKLTYPSGLATAVLINGFHSQGDQMAKKQVRGFMKYFSISFLWGFFQWF 234
LIPLRK++IVDLKLTYPSGLATAVLINGFH+QGD AKKQVRGFMKYFS SFLWGFFQWF
Sbjct: 182 LIPLRKVMIVDLKLTYPSGLATAVLINGFHTQGDAQAKKQVRGFMKYFSFSFLWGFFQWF 241
Query: 235 YSGKQSCGFKQFPTFGLQAWKQTFYFDFSMTYVGAGMICSHLVNLSLLLGAVLSYGIMWP 294
+SG + CGF QFPTFGL+AWKQTF+FDFSMT+VGAGMICSHLVNLSLLLGA+LSYG+MWP
Sbjct: 242 FSGIEDCGFAQFPTFGLKAWKQTFFFDFSMTFVGAGMICSHLVNLSLLLGAILSYGLMWP 301
Query: 295 LIDRLKGHWFSESLKESDMKSLYGYKVFLSVALILGDGLYNFLKILSLTVINIYGTIKTK 354
L+D+LKG WF ++L E +MKS+YGYKVFLSVALILGDGLY F+KIL +T+ N+ +K K
Sbjct: 302 LLDKLKGSWFPDNLDEHNMKSIYGYKVFLSVALILGDGLYTFVKILFVTIANVNARLKNK 361
Query: 355 NLNAGQLRSLKSFSTYKSLEDLKHNEIFLRENIPMWIGVAGYLVFSILSIIVIPIMFPQL 414
L K +DLK +E FLR+ IPMW V+GYL F+ +S +V+P++FPQL
Sbjct: 362 P------NDLDDVGHKKQRKDLKEDENFLRDKIPMWFAVSGYLTFAAVSTVVVPLIFPQL 415
Query: 415 KWYYVVIAYILAPSLSFCNAYGAGLTDINMAYNYGKVALFVLAALSGRENGLVAGMVGCG 474
KWYYV++AYI APSL+FCNAYGAGLTDINMAYNYGK+ LFV+AA++GRENG+VAG+ GCG
Sbjct: 416 KWYYVIVAYIFAPSLAFCNAYGAGLTDINMAYNYGKIGLFVIAAVTGRENGVVAGLAGCG 475
Query: 475 LVKSVVSVACILMQDFKTAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNP 534
L+KSVVSV+CILMQDFKTAH T TSP+AMF +Q+IGT +GC+V P+SF LFYKAFD+GNP
Sbjct: 476 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 535
Query: 535 HGEFKAPYALIYRNMAVIGVQGFSALPQHCLQLCYGLFASAVAVNLVRDFSPEKIGKWMP 594
+GEFKAPYALIYRNMA++GVQGFSALP HCLQ+CYG F AV VN+VRD +P KIG++MP
Sbjct: 536 NGEFKAPYALIYRNMAILGVQGFSALPLHCLQMCYGFFGFAVLVNVVRDLTPAKIGRFMP 595
Query: 595 LPMVMALPFLVGAYFAIDMCVGSLVVYLWHKRNPKKAELMIPAVASGLICGEGLWTLPAS 654
LP MA+PFLVGAYFAIDMCVG+L+V++W K N KKAE M+PAVASGLICGEGLWTLPA+
Sbjct: 596 LPTAMAVPFLVGAYFAIDMCVGTLIVFVWEKMNRKKAEFMVPAVASGLICGEGLWTLPAA 655
Query: 655 ILALAKIQPPICMKFLDS 672
+LALA ++PPICMKFL S
Sbjct: 656 VLALAGVKPPICMKFLAS 673
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Involved in iron loading of the seeds. Acts probably as a transporter of iron- and metal-nicotianamine chelates. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2EF88|YSL3_ARATH Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6R3K9|YSL2_ARATH Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7XUJ2|YSL9_ORYSJ Probable metal-nicotianamine transporter YSL9 OS=Oryza sativa subsp. japonica GN=YSL9 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q7XN54|YSL16_ORYSJ Probable metal-nicotianamine transporter YSL16 OS=Oryza sativa subsp. japonica GN=YSL16 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6H3Z3|YSL15_ORYSJ Iron-phytosiderophore transporter YSL15 OS=Oryza sativa subsp. japonica GN=YSL15 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6H3Z6|YSL2_ORYSJ Metal-nicotianamine transporter YSL2 OS=Oryza sativa subsp. japonica GN=YSL2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9AY27|YS1_MAIZE Iron-phytosiderophore transporter yellow stripe 1 OS=Zea mays GN=YS1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SHY2|YSL7_ARATH Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5JQD7|YSL12_ORYSJ Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 672 | ||||||
| 255555735 | 667 | oligopeptide transporter, putative [Rici | 0.991 | 0.998 | 0.759 | 0.0 | |
| 225426607 | 661 | PREDICTED: metal-nicotianamine transport | 0.982 | 0.998 | 0.723 | 0.0 | |
| 297742430 | 679 | unnamed protein product [Vitis vinifera] | 0.980 | 0.970 | 0.723 | 0.0 | |
| 147802774 | 661 | hypothetical protein VITISV_013366 [Viti | 0.982 | 0.998 | 0.721 | 0.0 | |
| 66009973 | 661 | putative YS1-like protein [Vitis vinifer | 0.982 | 0.998 | 0.723 | 0.0 | |
| 356577491 | 670 | PREDICTED: metal-nicotianamine transport | 0.979 | 0.982 | 0.734 | 0.0 | |
| 356535276 | 674 | PREDICTED: metal-nicotianamine transport | 0.989 | 0.986 | 0.720 | 0.0 | |
| 356576618 | 671 | PREDICTED: metal-nicotianamine transport | 0.985 | 0.986 | 0.724 | 0.0 | |
| 297803706 | 673 | hypothetical protein ARALYDRAFT_492451 [ | 0.988 | 0.986 | 0.705 | 0.0 | |
| 224058002 | 652 | oligopeptide transporter OPT family [Pop | 0.968 | 0.998 | 0.736 | 0.0 |
| >gi|255555735|ref|XP_002518903.1| oligopeptide transporter, putative [Ricinus communis] gi|223541890|gb|EEF43436.1| oligopeptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/673 (75%), Positives = 589/673 (87%), Gaps = 7/673 (1%)
Query: 1 MQEEKEKKEIEREDAEEDDHVELSDPEGSNKRQQPWTKQITIRGLVVSILLGIVYSVIVM 60
M E E K+ + + E+ + + EG R QPWTKQ+TIRG++VS ++G +YSVI M
Sbjct: 1 MSMEVEAKQKKEIEKEDMEEEAKVEAEGVVVRAQPWTKQLTIRGVIVSAVIGAIYSVIAM 60
Query: 61 KLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAGYVTRPFTKQENTMIQTCAVACYSIA 120
KLNLTTGLVP LNVSAALLAF+ IR+WTK+L +AGYV +PFT+QENTMIQTCAVACYSIA
Sbjct: 61 KLNLTTGLVPNLNVSAALLAFVFIRTWTKILHKAGYVAKPFTRQENTMIQTCAVACYSIA 120
Query: 121 VGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFVLIPLRK 180
VGGGF SYLLGL+RK YELSGE TEGNS RAIKEP GWM G+LF+VCFVGLFVLIPLRK
Sbjct: 121 VGGGFASYLLGLNRKTYELSGEHTEGNSPRAIKEPEFGWMTGFLFLVCFVGLFVLIPLRK 180
Query: 181 IVIVDLKLTYPSGLATAVLINGFHSQGDQMAKKQVRGFMKYFSISFLWGFFQWFYSGKQS 240
I+IVDLKLTYPSGLATAVLINGFH+QGD+MAKKQV GFM+YFSISFLW FF+WFY+GK+
Sbjct: 181 IMIVDLKLTYPSGLATAVLINGFHTQGDKMAKKQVHGFMRYFSISFLWAFFKWFYTGKEV 240
Query: 241 CGFKQFPTFGLQAWKQTFYFDFSMTYVGAGMICSHLVNLSLLLGAVLSYGIMWPLIDRLK 300
CGF QFPTFGLQAWKQTF+FDFS T+VGAGMI SHLVNLSLLLGAVLSYGIMWPLI++LK
Sbjct: 241 CGFSQFPTFGLQAWKQTFFFDFSATFVGAGMIVSHLVNLSLLLGAVLSYGIMWPLINKLK 300
Query: 301 GHWFSESLK-ESDMKSLYGYKVFLSVALILGDGLYNFLKILSLTVINIYGTIKTKNLNAG 359
G WF + + E+DMK LYGYKVF+SVALILGDGLYNF+KI+S T+IN++G IK KNLNA
Sbjct: 301 GDWFPVNTEGEADMKGLYGYKVFMSVALILGDGLYNFVKIISFTLINVHGRIKKKNLNAA 360
Query: 360 QLRSLKSFSTYKSLEDLKHNEIFLRENIPMWIGVAGYLVFSILSIIVIPIMFPQLKWYYV 419
KSL+DLK NE+F+RE IPMW+G+AGY+ FS++S I +P++FPQLKWYYV
Sbjct: 361 LDEQ------EKSLDDLKQNELFVREKIPMWVGLAGYIFFSVISTIAVPMIFPQLKWYYV 414
Query: 420 VIAYILAPSLSFCNAYGAGLTDINMAYNYGKVALFVLAALSGRENGLVAGMVGCGLVKSV 479
V+AYILAPSL+FCNAYGAGLTDINMAYNYGKVALFVLAALSG+ENG+VA + GCGL+KSV
Sbjct: 415 VVAYILAPSLAFCNAYGAGLTDINMAYNYGKVALFVLAALSGKENGVVAALAGCGLIKSV 474
Query: 480 VSVACILMQDFKTAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNPHGEFK 539
VSVACILMQDFKTAH T+TSPRAMFL+QVIGTAIGCV+AP+SF ++YKAFD+GNP GEFK
Sbjct: 475 VSVACILMQDFKTAHLTFTSPRAMFLSQVIGTAIGCVMAPLSFFIYYKAFDIGNPQGEFK 534
Query: 540 APYALIYRNMAVIGVQGFSALPQHCLQLCYGLFASAVAVNLVRDFSPEKIGKWMPLPMVM 599
APYALIYRNMA++GV+G SALP HCLQLCYG F AVA+NLVRD SP K+G WMPLPMVM
Sbjct: 535 APYALIYRNMAILGVEGISALPHHCLQLCYGFFGFAVAINLVRDLSPRKLGPWMPLPMVM 594
Query: 600 ALPFLVGAYFAIDMCVGSLVVYLWHKRNPKKAELMIPAVASGLICGEGLWTLPASILALA 659
A+PFLVGAYFAIDMC+GSL+V+ W+K N KKAE MIPAVASGLICGEGLWTLPA++LALA
Sbjct: 595 AVPFLVGAYFAIDMCIGSLIVFSWNKLNGKKAESMIPAVASGLICGEGLWTLPAAVLALA 654
Query: 660 KIQPPICMKFLDS 672
KI PPICMKF+ S
Sbjct: 655 KINPPICMKFVAS 667
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426607|ref|XP_002280483.1| PREDICTED: metal-nicotianamine transporter YSL1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297742430|emb|CBI34579.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147802774|emb|CAN77515.1| hypothetical protein VITISV_013366 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|66009973|gb|AAT09976.1| putative YS1-like protein [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356577491|ref|XP_003556858.1| PREDICTED: metal-nicotianamine transporter YSL1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356535276|ref|XP_003536174.1| PREDICTED: metal-nicotianamine transporter YSL1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356576618|ref|XP_003556427.1| PREDICTED: metal-nicotianamine transporter YSL1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297803706|ref|XP_002869737.1| hypothetical protein ARALYDRAFT_492451 [Arabidopsis lyrata subsp. lyrata] gi|297315573|gb|EFH45996.1| hypothetical protein ARALYDRAFT_492451 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224058002|ref|XP_002299431.1| oligopeptide transporter OPT family [Populus trichocarpa] gi|222846689|gb|EEE84236.1| oligopeptide transporter OPT family [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 672 | ||||||
| TAIR|locus:2134956 | 673 | YSL1 "YELLOW STRIPE like 1" [A | 0.956 | 0.955 | 0.665 | 2.2e-247 | |
| TAIR|locus:2168656 | 675 | YSL3 "YELLOW STRIPE like 3" [A | 0.962 | 0.958 | 0.644 | 1.9e-234 | |
| TAIR|locus:2152896 | 664 | YSL2 "AT5G24380" [Arabidopsis | 0.949 | 0.960 | 0.640 | 2.8e-231 | |
| TAIR|locus:2018491 | 688 | YSL7 "AT1G65730" [Arabidopsis | 0.952 | 0.930 | 0.522 | 3.4e-187 | |
| TAIR|locus:2091970 | 676 | YSL6 "AT3G27020" [Arabidopsis | 0.941 | 0.936 | 0.482 | 1.5e-179 | |
| TAIR|locus:2090502 | 714 | YSL5 "AT3G17650" [Arabidopsis | 0.946 | 0.890 | 0.493 | 3.9e-179 | |
| TAIR|locus:2007715 | 724 | YSL8 "AT1G48370" [Arabidopsis | 0.946 | 0.878 | 0.500 | 1.7e-178 | |
| TAIR|locus:2163036 | 670 | YSL4 "AT5G41000" [Arabidopsis | 0.946 | 0.949 | 0.485 | 3.1e-177 | |
| TAIR|locus:2163508 | 216 | AT5G45450 "AT5G45450" [Arabido | 0.299 | 0.930 | 0.509 | 1.6e-54 | |
| CGD|CAL0001509 | 718 | OPT8 [Candida albicans (taxid: | 0.410 | 0.384 | 0.276 | 6e-30 |
| TAIR|locus:2134956 YSL1 "YELLOW STRIPE like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2383 (843.9 bits), Expect = 2.2e-247, P = 2.2e-247
Identities = 432/649 (66%), Positives = 524/649 (80%)
Query: 24 SDPEGSNKRQQPWTKQITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLI 83
++ E S + +PWTKQIT+RG+ VSI++G+V+SVI KLNLTTG+VP LN SAALLAF+
Sbjct: 31 TEEEMSGRTIEPWTKQITVRGVFVSIVIGVVFSVIAQKLNLTTGIVPNLNSSAALLAFVF 90
Query: 84 IRSWTKVLQRAGYVTRPFTKQENTMIQTCAVACYSIAVXXXXXXXXXXXXRKIYELSGED 143
+++WTK+L+++G+V +PFT+QENTMIQT AVACY IAV K Y LSG +
Sbjct: 91 VQTWTKILKKSGFVAKPFTRQENTMIQTSAVACYGIAVGGGFASYLLGLNHKTYVLSGVN 150
Query: 144 TEGNSRRAIKEPGLGWMIGYXXXXXXXXXXXXIPLRKIVIVDLKLTYPSGLATAVLINGF 203
EGNS +++KEPGLGWM Y IPLRK++IVDLKLTYPSGLATAVLINGF
Sbjct: 151 LEGNSPKSVKEPGLGWMTAYLFVVCFIGLFVLIPLRKVMIVDLKLTYPSGLATAVLINGF 210
Query: 204 HSQGDQMAKKQVRGFMKYFSISFLWGFFQWFYSGKQSCGFKQFPTFGLQAWKQTFYFDFS 263
H+QGD AKKQVRGFMKYFS SFLWGFFQWF+SG + CGF QFPTFGL+AWKQTF+FDFS
Sbjct: 211 HTQGDAQAKKQVRGFMKYFSFSFLWGFFQWFFSGIEDCGFAQFPTFGLKAWKQTFFFDFS 270
Query: 264 MTYVGAGMICSHXXXXXXXXXXXXXYGIMWPLIDRLKGHWFSESLKESDMKSLYGYKVFL 323
MT+VGAGMICSH YG+MWPL+D+LKG WF ++L E +MKS+YGYKVFL
Sbjct: 271 MTFVGAGMICSHLVNLSLLLGAILSYGLMWPLLDKLKGSWFPDNLDEHNMKSIYGYKVFL 330
Query: 324 SVALILGDGLYNFLKILSLTVINIYGTIKTKNLNAGQLRSLKSFSTYKSLEDLKHNEIFL 383
SVALILGDGLY F+KIL +T+ N+ +K K L K +DLK +E FL
Sbjct: 331 SVALILGDGLYTFVKILFVTIANVNARLKNKP------NDLDDVGHKKQRKDLKEDENFL 384
Query: 384 RENIPMWIGVAGYLVFSILSIIVIPIMFPQLKWYYVVIAYILAPSLSFCNAYGAGLTDIN 443
R+ IPMW V+GYL F+ +S +V+P++FPQLKWYYV++AYI APSL+FCNAYGAGLTDIN
Sbjct: 385 RDKIPMWFAVSGYLTFAAVSTVVVPLIFPQLKWYYVIVAYIFAPSLAFCNAYGAGLTDIN 444
Query: 444 MAYNYGKVALFVLAALSGRENGLVAGMVGCGLVKSVVSVACILMQDFKTAHCTYTSPRAM 503
MAYNYGK+ LFV+AA++GRENG+VAG+ GCGL+KSVVSV+CILMQDFKTAH T TSP+AM
Sbjct: 445 MAYNYGKIGLFVIAAVTGRENGVVAGLAGCGLIKSVVSVSCILMQDFKTAHYTMTSPKAM 504
Query: 504 FLNQVIGTAIGCVVAPISFLLFYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSALPQH 563
F +Q+IGT +GC+V P+SF LFYKAFD+GNP+GEFKAPYALIYRNMA++GVQGFSALP H
Sbjct: 505 FASQMIGTVVGCIVTPLSFFLFYKAFDIGNPNGEFKAPYALIYRNMAILGVQGFSALPLH 564
Query: 564 CLQLCYGLFASAVAVNLVRDFSPEKIGKWMPLPMVMALPFLVGAYFAIDMCVGSLVVYLW 623
CLQ+CYG F AV VN+VRD +P KIG++MPLP MA+PFLVGAYFAIDMCVG+L+V++W
Sbjct: 565 CLQMCYGFFGFAVLVNVVRDLTPAKIGRFMPLPTAMAVPFLVGAYFAIDMCVGTLIVFVW 624
Query: 624 HKRNPKKAELMIPAVASGLICGEGLWTLPASILALAKIQPPICMKFLDS 672
K N KKAE M+PAVASGLICGEGLWTLPA++LALA ++PPICMKFL S
Sbjct: 625 EKMNRKKAEFMVPAVASGLICGEGLWTLPAAVLALAGVKPPICMKFLAS 673
|
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| TAIR|locus:2168656 YSL3 "YELLOW STRIPE like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2152896 YSL2 "AT5G24380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2018491 YSL7 "AT1G65730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091970 YSL6 "AT3G27020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2090502 YSL5 "AT3G17650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2007715 YSL8 "AT1G48370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163036 YSL4 "AT5G41000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163508 AT5G45450 "AT5G45450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| CGD|CAL0001509 OPT8 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9AY27 | YS1_MAIZE | No assigned EC number | 0.5877 | 0.9806 | 0.9662 | N/A | no |
| Q7XUJ2 | YSL9_ORYSJ | No assigned EC number | 0.6386 | 0.9791 | 0.9619 | yes | no |
| Q6R3L0 | YSL1_ARATH | No assigned EC number | 0.6976 | 0.9880 | 0.9866 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 672 | |||
| pfam03169 | 619 | pfam03169, OPT, OPT oligopeptide transporter prote | 1e-128 | |
| TIGR00728 | 606 | TIGR00728, OPT_sfam, oligopeptide transporter, OPT | 1e-113 | |
| COG1297 | 624 | COG1297, COG1297, Predicted membrane protein [Func | 2e-25 | |
| TIGR00733 | 591 | TIGR00733, TIGR00733, putative oligopeptide transp | 9e-15 | |
| TIGR00727 | 681 | TIGR00727, ISP4_OPT, small oligopeptide transporte | 5e-04 |
| >gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-128
Identities = 172/646 (26%), Positives = 280/646 (43%), Gaps = 54/646 (8%)
Query: 39 QITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAGYVT 98
++T R +V+ ILL I+ + + M L TG V ++ AALLA+ + ++ ++L +
Sbjct: 1 ELTFRAVVLGILLAILGAAVNMYFGLKTGSVSISSIPAALLAYPLGKALARILGGIRFSL 60
Query: 99 --RPFTKQENTMIQTCAVACYSIAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPG 156
PFT +EN +IQT A A S A GGF L L +
Sbjct: 61 NPGPFTIKENNLIQTMASAGASTAYAGGFIFVLPALLFYG----------------QSFS 104
Query: 157 LGWMIGYLFVVCFVGLFVLIPLRKIVIVDLKLTYPSGLATAVLINGFH-SQGDQMAKKQV 215
G+ I L +G+ PLR+ ++ KL +PSGLATA L+ H G + AK ++
Sbjct: 105 FGYAILLLLSTQLLGVGFAGPLRRFLVYPPKLPFPSGLATAELLKALHTPGGWKEAKSRL 164
Query: 216 RGFMKYFSISFLWGFF--QWFY---SGKQSCGFKQ-FPTFGLQAWKQTFYFDFSMTYVGA 269
+ F+ F SF++ +F F S C PTFGL F FD+S +G+
Sbjct: 165 KFFLIGFVASFVYYWFPFYIFPALSSFSWVCWIAPSNPTFGLLFGGLGFTFDWSAILLGS 224
Query: 270 GMICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESL---------KESDMKSLYGYK 320
G+I V +++L+GAVLS+GI+ PL+ W++ L L Y
Sbjct: 225 GLIVPLWVAVNMLIGAVLSWGIIIPLLYYSGNVWYTAYLPIMSNGLFDNTGTSDGLLDYA 284
Query: 321 VFLSVALILGDGLYNFLKILSLTVINIYGTIKTKNLNAGQLRSLKSFSTYKSLEDLKHNE 380
++ +L GLY L ++T ++ + + S KS +D
Sbjct: 285 RYIGYGPMLLSGLYALLFFAAITATIVHSILF--HGRDIWQALKASRGPKKSYDDPHRRL 342
Query: 381 IFLRENIPMWIGVAGYLVFSILSIIVIPIMFP-QLKWYYVVIAYILAPSLSFCNAYGAGL 439
+ + +PMW +AG ++ +L I ++ +FP QL + +++A +LA + +AY AGL
Sbjct: 343 MRKYKEVPMWWYLAGLVLSLVLGIALVAALFPTQLPVWGLLLALLLAFVFAIPSAYIAGL 402
Query: 440 TDINMAYNYGKVALFVLAALSGRENGLVAGMVGCGLVKSVVSVACILMQDFKTAHCTYTS 499
T + G + + + +A ++ G+ + + A MQD KT H T
Sbjct: 403 TGSSPVSGLGILTELIAGYVLPGR--PLANLIFGGVGYNAAAQAGDFMQDLKTGHYTGAP 460
Query: 500 PRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNP---HGEFKAPYALIYRNMAVIGVQG 556
PRA F+ Q+IGT +G VV P L +A+ AP A +A + G
Sbjct: 461 PRAQFVAQLIGTLVGSVVNPGVLNLLNQAYGCTGAQGDSWTCPAPQAFFSAAVAWGVIGG 520
Query: 557 FSA-LPQHCLQLCYGLFASAVAVNLVRDFSPEKIGKWMPLPMVMA----LPFLVGAYFAI 611
LP + L + + A A ++ + K +P + A + +
Sbjct: 521 KRFGLPYYALLWGFLVGAVAPVLDWLL-------HKRLPRSLAFAGAGTIGPYLPPSLTS 573
Query: 612 DMCVGSLVVYLWHKRNPKKAELMIPAVASGLICGEGLWTLPASILA 657
+ VG L Y +R +A+GLI GE L + + L
Sbjct: 574 AILVGGLFNYYVRRRRKAWWRKYNYVLAAGLIAGEALMGVIIAFLV 619
|
The OPT family of oligopeptide transporters is distinct from the ABC pfam00005 and PTR pfam00854 transporter families. OPT transporters were first recognised in fungi (Candida albicans and Schizosaccharomyces pombe), but this alignment also includes orthologues from Arabidopsis thaliana. OPT transporters are thought to have 12-14 transmembrane domains and contain the following motif: SPYxEVRxxVxxxDDP. Length = 619 |
| >gnl|CDD|233105 TIGR00728, OPT_sfam, oligopeptide transporter, OPT superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|224216 COG1297, COG1297, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|129816 TIGR00733, TIGR00733, putative oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >gnl|CDD|129810 TIGR00727, ISP4_OPT, small oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 672 | |||
| TIGR00733 | 591 | putative oligopeptide transporter, OPT family. Thi | 100.0 | |
| PF03169 | 624 | OPT: OPT oligopeptide transporter protein; InterPr | 100.0 | |
| TIGR00728 | 654 | OPT_sfam oligopeptide transporters, OPT superfamil | 100.0 | |
| COG1297 | 624 | Predicted membrane protein [Function unknown] | 100.0 | |
| TIGR00727 | 681 | ISP4_OPT small oligopeptide transporter, OPT famil | 100.0 | |
| KOG2262 | 761 | consensus Sexual differentiation process protein I | 100.0 | |
| PF03169 | 624 | OPT: OPT oligopeptide transporter protein; InterPr | 96.65 | |
| TIGR00733 | 591 | putative oligopeptide transporter, OPT family. Thi | 94.89 |
| >TIGR00733 putative oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-112 Score=962.04 Aligned_cols=551 Identities=18% Similarity=0.267 Sum_probs=440.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhHHHHHHHhhhhh
Q 037863 39 QITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAGYVTRPFTKQENTMIQTCAVACYS 118 (672)
Q Consensus 39 qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~~~~i~~~pft~~ENnivQT~AsA~g~ 118 (672)
|+|+||+++|+++|+++|++|+|+|||+|||+++|||+|+|||+++|.++| +||+|||++||+|||+++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999998543 599999999999999999
Q ss_pred hccchhhhHHHhhhhHHHHhhhCCCCCCCCcccccCCchHHHHHHHHHHHHHhhHhHHhhhhhhhccCCcCChhhHHHHH
Q 037863 119 IAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFVLIPLRKIVIVDLKLTYPSGLATAV 198 (672)
Q Consensus 119 ~~~~~gf~~~ipAm~~l~~~ll~~~~~g~~~~~~~~~~~g~~~~~~~~~~~lGv~favPLRr~~Iv~~~L~FPsGtAtA~ 198 (672)
++ |++..+|||+++ + +|+++++++++.|+++++++||+|++||||+||+||||+|||||||||
T Consensus 70 ~a---g~~~~lPAl~~l-----g---------~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae 132 (591)
T TIGR00733 70 LS---SVIFVLPALLML-----G---------YWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAE 132 (591)
T ss_pred HH---HHHHHHHHHHhc-----C---------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Confidence 86 688999998654 2 123567888999999999999999999999999999999999999999
Q ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCccccccccccc------ccceeeeeccccchhccee
Q 037863 199 LINGFHSQGDQMAKKQVRGFMKYFSISFLWGFFQWFYSGKQSCGFKQFPTFGLQA------WKQTFYFDFSMTYVGAGMI 272 (672)
Q Consensus 199 ~I~~~h~~g~~~a~~~~~~L~~~f~~s~~~~~~~~~~~~g~~~~~~~~~~~g~~~------~~~~~~~~~spa~iG~G~i 272 (672)
+|++.+ +|+ .++|.|.|..++..|++|+++.- ++.+| .+.+. ..++|++|+||+|+|+|||
T Consensus 133 ~l~~g~-~g~--~~~~~~~l~~g~~~s~~~~~~~~---------~~~~~-~~~~~~~~~g~~~~~~~~~~SpalvG~G~i 199 (591)
T TIGR00733 133 VLKAGD-KAR--NGTGAKPIAYGGILASIYAFLGS---------LRVWS-GTLSAAKLVGRRALYFGSDLSLALIGVGYL 199 (591)
T ss_pred HHHccc-ccc--chhhHHHHHHHHHHHHHHHHHHH---------hccCC-chHHHHHhcCCcceEEEecccHHHHcCcee
Confidence 999754 222 35678889988888888877631 12222 11111 1358899999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCcchh-hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037863 273 CSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLKESDM-KSLYG-YKVFLSVALILGDGLYNFLKILSLTVINIYGT 350 (672)
Q Consensus 273 vG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~~~~~-~g~~~-y~v~ig~~~m~~~gl~~l~~~~~~~~~~~~~~ 350 (672)
||+++++|||+|++++|++++|++.++ +|+|++.++++. ..+|+ |.+|+|+++|++||+++++++.++.++++++.
T Consensus 200 vG~~v~~s~~~G~vlaWgvl~P~l~~~--~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~ 277 (591)
T TIGR00733 200 VGLNIGFAMFLGGAIAWGVAIPIYTAK--MGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAG 277 (591)
T ss_pred eChHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865 477766554322 33554 34469999999999999999988888888877
Q ss_pred hhhcccccccccccccccccCccccccccchhhcCCChhHHHHHHHHHHHHHHHHhhccccC----chhHHHH----HHH
Q 037863 351 IKTKNLNAGQLRSLKSFSTYKSLEDLKHNEIFLRENIPMWIGVAGYLVFSILSIIVIPIMFP----QLKWYYV----VIA 422 (672)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~glv~~~~i~~~~~~~~f~----~~~~~~~----lla 422 (672)
.+.++++ + +.+|.+|+ ++|+|.|+...++++ .++. +....|. +.+++++ +++
T Consensus 278 ~~~~~~~--~-----------~~~~~~r~----~~dip~~~v~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~la 337 (591)
T TIGR00733 278 LEAARRR--Q-----------AGEAVLRT----EEDLPINIVLTLVAL-FVIP--LADFLLYAPILHNIGMAIAVMAVLM 337 (591)
T ss_pred HHHhccc--c-----------cccccccc----cccccHHHHHHHHHH-HHHH--HHHHhcCCcccchhhHHHHHHHHHH
Confidence 6654321 1 00122333 567898865444332 2222 2222331 1233444 444
Q ss_pred HHHHHHhhhhhccccce--eccCccchhhHHHHHHHHHHh--------C--CCchhHHHHHhhHHHHHHHHHHHHhhhhh
Q 037863 423 YILAPSLSFCNAYGAGL--TDINMAYNYGKVALFVLAALS--------G--RENGLVAGMVGCGLVKSVVSVACILMQDF 490 (672)
Q Consensus 423 ~~la~v~s~~~~~~~G~--Td~np~~~~gkisqli~g~~~--------g--~~~~~~anL~~~~i~~~~a~qA~dl~qDl 490 (672)
++++|+++.+.+|++|+ ||+||+++++|++|++++.+. + .|+++.+||++|+++|++++||+|+||||
T Consensus 338 ~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDl 417 (591)
T TIGR00733 338 LIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDL 417 (591)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 44444544455566679 889999999999999999997 1 15889999999999999999999999999
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCC-----CCCCCCchHHHHHHHHHHhhhcCCCCCchhhH
Q 037863 491 KTAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGN-----PHGEFKAPYALIYRNMAVIGVQGFSALPQHCL 565 (672)
Q Consensus 491 KtG~LlgasPr~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~-----p~~~~~aP~a~~~~~vA~l~~~G~~~LP~~~l 565 (672)
|||||+|+|||+||++|++|+++||++++++|++|+++|++++ |+++||||||.+|+++++-..+| .+|+.
T Consensus 418 KtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~gi~~~--~l~~~-- 493 (591)
T TIGR00733 418 KTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTEGVFTG--TLEWT-- 493 (591)
T ss_pred HhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHhhhcCC--CccHH--
Confidence 9999999999999999999999999999999999999999854 56789999999999998544332 34433
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccchhhhhcccccchhhhHHHHHHHHHHHHHHHhcCccc------cccchhhhh
Q 037863 566 QLCYGLFASAVAVNLVRDFSPEKIGKWMPLPMVMALPFLVGAYFAIDMCVGSLVVYLWHKRNPKK------AELMIPAVA 639 (672)
Q Consensus 566 ~~~~v~~~~~~~~~~~~~~~~~~~~~~iPs~~a~gig~~lp~~~s~~~~iG~li~~~~~r~~~~~------~~~~~~~vA 639 (672)
+.++.+++++++.++|++++||+++|-++++++|+|||+|++++++|++|++++|+|+|+++++ .+++++++|
T Consensus 494 -~i~~ga~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vA 572 (591)
T TIGR00733 494 -MVFIGAGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGA 572 (591)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEe
Confidence 2233455677888999988876666644499999999999999999999999999999986532 247899999
Q ss_pred hhhhhchhhhHHHHHHHH
Q 037863 640 SGLICGEGLWTLPASILA 657 (672)
Q Consensus 640 sGLIaGegl~gvv~a~L~ 657 (672)
||||||||++||++|++.
T Consensus 573 SGLIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 573 AGLIVGESLTGVVFAAII 590 (591)
T ss_pred cHhhcchHHHHHHHHHHh
Confidence 999999999999999874
|
This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane. |
| >PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast | Back alignment and domain information |
|---|
| >TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily | Back alignment and domain information |
|---|
| >COG1297 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast | Back alignment and domain information |
|---|
| >TIGR00733 putative oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00