Citrus Sinensis ID: 037878
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2280 | 2.2.26 [Sep-21-2011] | |||||||
| B2HIM0 | 580 | Long-chain-fatty-acid--AM | no | no | 0.223 | 0.879 | 0.315 | 6e-66 | |
| B2HMK0 | 629 | Long-chain-fatty-acid--AM | no | no | 0.242 | 0.880 | 0.298 | 5e-64 | |
| B2HIN2 | 584 | Long-chain-fatty-acid--AM | no | no | 0.207 | 0.811 | 0.32 | 9e-63 | |
| P96290 | 580 | Long-chain-fatty-acid--AM | yes | no | 0.224 | 0.882 | 0.315 | 2e-62 | |
| Q02278 | 580 | Long-chain-fatty-acid--AM | yes | no | 0.224 | 0.882 | 0.315 | 3e-62 | |
| P95141 | 619 | Long-chain-fatty-acid--AM | no | no | 0.208 | 0.768 | 0.317 | 3e-62 | |
| Q7TXK5 | 619 | Long-chain-fatty-acid--AM | no | no | 0.208 | 0.768 | 0.317 | 3e-62 | |
| O53580 | 637 | Long-chain-fatty-acid--AM | no | no | 0.242 | 0.869 | 0.292 | 2e-61 | |
| Q7TTR2 | 637 | Long-chain-fatty-acid--AM | no | no | 0.242 | 0.869 | 0.292 | 2e-61 | |
| O07797 | 584 | Probable long-chain-fatty | no | no | 0.205 | 0.803 | 0.316 | 2e-61 |
| >sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD28 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 254 bits (649), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 188/595 (31%), Positives = 295/595 (49%), Gaps = 85/595 (14%)
Query: 482 RITQKKTLFTWINEE---GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYV 538
R+ FT++N E A T+ +L +A +L + GDR +++
Sbjct: 15 RLQPNDPAFTFMNYEQNWDGAAETLTWSQLYRRTLNVARELSSCGSV----GDRAVILAP 70
Query: 539 PGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILST------I 592
GL++V AF G ++A + VP+ P +GG + + ++ + VAIL+T +
Sbjct: 71 QGLEYVVAFLGALQAGRIAVPLSVP----QGGASDERATSVLRDASPVAILTTSPVIDDV 126
Query: 593 GYH-SAVRVGSWPN---LPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTG 648
H SA G P+ L L D+ + TE+ P +LQ+TSGST
Sbjct: 127 TQHVSAQSAGPAPSIIELDRLDLDAAAGSGAG---------TENYPA-TAYLQYTSGSTR 176
Query: 649 DAKGVMITHGGLIHNV-KLMRKRYKSTS-----KTVLVSWLPQYHDMGLIGGLFTAMVGG 702
+ GVM++H L+ N +LM + T + LVSWLP YHDMGL+ G+ ++GG
Sbjct: 177 EPAGVMLSHQNLVTNFEQLMSGYFADTDGIAPPDSTLVSWLPFYHDMGLVLGVCAPILGG 236
Query: 703 STAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMK 762
A+L SP++F++ P WL+ ++ SA PNFAFEL +++ S D + DL ++
Sbjct: 237 YQAVLTSPVSFLQRPARWLQMLATSSHAFSAAPNFAFELAAKKV--SDDDMAGLDLGNVL 294
Query: 763 FLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDW-- 820
++ +E V+ T+KRF + F L + V+ P YGLAE V+VS + P ++++
Sbjct: 295 TILSGSERVQPATLKRFADRFARFNLQEKVLRPSYGLAEATVYVSTSRPGQPPELVEFDA 354
Query: 821 ------QGRVC--------CGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAG 866
Q + C YV P V R+V+P+T E + G GE+W+ +
Sbjct: 355 ESLSTGQAKQCESGAGTQLVSYVLPRSPIV--RVVDPDTCTECPD-GTVGEIWVCGDNVA 411
Query: 867 IGYWGREELSQITFRNEL----QNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRN 922
IGYW + E S+ TF +L + + RTGD G I DGK FI GRIKDL+IV GRN
Sbjct: 412 IGYWNKPEESERTFGGKLASPSEGTPEGPWLRTGDSGFITDGKMFIIGRIKDLLIVYGRN 471
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
D+E T++ T CA I VP + + K LV I E R
Sbjct: 472 HSPDDIEATIQEITRSR----CAAISVPGDRSTEK------------LVAIIEYRRRGDS 515
Query: 983 DKDVIE-------NIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
D++ ++ + + + HG++VA + L+ P ++ TTSGK++R C++Q+
Sbjct: 516 DQEAMDMLVAVKREVTSALSNSHGLSVADLVLVAPGSIPTTTSGKVRRAACVEQY 570
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Catalyzes the activation of long-chain fatty acids (C22-24 fatty acids) as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase Mas for further chain extension. Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|B2HMK0|FAA32_MYCMM Long-chain-fatty-acid--AMP ligase FadD32 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 187/626 (29%), Positives = 298/626 (47%), Gaps = 72/626 (11%)
Query: 463 VEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQST-YEELDANASRIAHKLLT 521
+ FPE ++L +++ W R + F + E V + + E A + +L
Sbjct: 13 IRFPENTNLVRHVEKWARVRGDKLAYRFLDFSTERDGVERDILWSEFSARNRAVGARL-- 70
Query: 522 SRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISK 581
+ V +PGDR+ ++ LD++ +FFG + + + VP+ DP + G + ++ +
Sbjct: 71 --QQVTQPGDRIAILCPQNLDYLISFFGALYSGRIAVPLF--DPAEPG--HVGRLHAVLD 124
Query: 582 SCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENV---VCFTESQPD--- 635
C IL+T VR ++ + S + + + + V V T QP+
Sbjct: 125 DCTPSTILTTTDSAEGVR-------KFIRSRSAKERPRVIAVDAVPTEVASTWQQPEANE 177
Query: 636 -DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694
+LQ+TSGST GV ITH L NV + + VSWLP +HDMGLI
Sbjct: 178 LTTAYLQYTSGSTRVPSGVQITHLNLPTNVLQVLNALEGQEGDRGVSWLPFFHDMGLITV 237
Query: 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA----THSAGPNFAFELMVRRLESSK 750
L +++G S + +P F++ P W+ +++ T SA PNFAFE R +
Sbjct: 238 LLASVLGHSFTFM-TPAAFVRRPGRWIRELARKPGETGGTFSAAPNFAFEHAAMR-GVPR 295
Query: 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY 810
D DLS++K ++ +EPV ++++F + P+GL + + P YGLAE +FVS
Sbjct: 296 DDEPPLDLSNVKGILNGSEPVSPASMRKFFKAFEPYGLRETAVKPSYGLAEATLFVSTTP 355
Query: 811 GQGKPIIL--------------------DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG 850
P ++ + +V G V ++ V IV+ ET+ E+
Sbjct: 356 MDEVPTVIHVDRDELNKQRFVEVAADAPNAVAQVSAGKVGVDEWAV---IVDTETASELP 412
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYT----------RTGDLGR 900
+ G+ GE+W+ + GIGYWG+EE S TFRN L++ + RTGD G
Sbjct: 413 D-GQIGEIWLHGNNLGIGYWGKEEESAQTFRNILKSRVPESHAEGAPDDGLWVRTGDYGT 471
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTK--- 957
G +I GRIKDL+I+ GRN Y D+E T + ST+ +R G A VP L K
Sbjct: 472 YFKGHLYIAGRIKDLVIIDGRNHYPQDLEYTAQESTKALRVGYVAAFSVPANQLPQKVFD 531
Query: 958 ----GISVSDGSDQVGLVVIAEVRDG--KPVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011
G+S LV++ E G K + + ++I+ + HGVTV V L+
Sbjct: 532 DPHAGLSFDPEDTSEQLVIVGERAAGTHKLEYQPIADDIRAAIAVGHGVTVRDVLLVSAG 591
Query: 1012 TMSKTTSGKIKRFECLKQFVDGTLNT 1037
T+ +T+SGKI R C ++DG+L +
Sbjct: 592 TIPRTSSGKIGRRACRTAYIDGSLRS 617
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Catalyzes the activation of long-chain fatty acids as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase (PKS) for further chain extension. Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|B2HIN2|FAA26_MYCMM Long-chain-fatty-acid--AMP ligase FadD26 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 176/550 (32%), Positives = 269/550 (48%), Gaps = 76/550 (13%)
Query: 529 PGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAI 588
PGDRV ++ GL+++ AF G ++A + VP+ P + G ++ + + VAI
Sbjct: 63 PGDRVAILAPQGLEYIVAFLGALQAGFIGVPLSTP----QYGVHDERVSAVLRDSQPVAI 118
Query: 589 LSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDL--------CFL 640
L+T SAV VG ++ + + + +++ +++ +P +L
Sbjct: 119 LTT----SAV-VG---DVTKYASSQDGQPAPSVIEVDLLDLDTPRPQQALPQPASGSAYL 170
Query: 641 QFTSGSTGDAKGVMITHGGLIHNVKLMRKRY-----KSTSKTVLVSWLPQYHDMGLIGGL 695
Q+TSGST GV+++H +I NV Y K + T +VSWLP +HDMGLI G+
Sbjct: 171 QYTSGSTRTPAGVIVSHENVIANVTQSLYGYFGGPDKFPADTTVVSWLPLFHDMGLILGI 230
Query: 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRS 755
+V G TA+L SP++F++ P W++ ++ + SA PNFAFEL VRR ++ + +
Sbjct: 231 CAPLVTGCTAVLLSPMSFLRRPARWMQLLASHPKCFSAAPNFAFELAVRR--TTDEDLAG 288
Query: 756 FDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFV--------- 806
DL + ++ +E + T+KRF E PF LS + P YGLAE ++V
Sbjct: 289 LDLGDVLGIVSGSERIHVATIKRFTERFAPFNLSPAAVRPSYGLAEATLYVAAPEPGTTP 348
Query: 807 --------SCAYGQGKPIILDWQGRVCCGYVDQNDPDVD-IRIVNPETSEEIGEPGKEGE 857
S G +P D G V + PD +RIVNPET E G GE
Sbjct: 349 RTVRFDYESLTAGHARPCRAD--GSVGTELISYGSPDPSAVRIVNPETMIE-NPSGTVGE 405
Query: 858 VWISSPSAGIGYWGREELSQITFRNELQN----NRGRKYTRTGDLGRIIDGKFFITGRIK 913
+W +GYW + E S TF + N + RTGDLG + +G+ FI GRIK
Sbjct: 406 IWAHGEHVAMGYWQKPEQSDRTFNARIVNPAPGTPEGPWLRTGDLGVMSNGELFIMGRIK 465
Query: 914 DLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVI 973
DL+IV GRN Y D+E T+ + I G A I VP+ + LV I
Sbjct: 466 DLVIVDGRNHYPDDIEATI----QEITGGRVAAIAVPDNITEQ-------------LVAI 508
Query: 974 AEV-RDGKPVD------KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFEC 1026
E+ R G + + V I + + + H + VA V L+ P ++ TTSGKI+R C
Sbjct: 509 IELKRRGASAEEAMVKLRSVKREITSAISKSHSLRVADVVLVPPGSIPITTSGKIRRAAC 568
Query: 1027 LKQFVDGTLN 1036
++++ N
Sbjct: 569 VERYRSDGFN 578
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Catalyzes the activation of long-chain fatty acids (C22-24 fatty acids) as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase PpsA for further chain extension. Involved in the biosynthesis of phthiocerol dimycocerosate (DIM A) and phthiodiolone dimycocerosate (DIM B). Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P96290|FAA28_MYCTU Long-chain-fatty-acid--AMP ligase FadD28 OS=Mycobacterium tuberculosis GN=fadD28 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 187/593 (31%), Positives = 293/593 (49%), Gaps = 81/593 (13%)
Query: 482 RITQKKTLFTWINEE----GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVY 537
R+ FT+++ E GVA+ T+ +L +A +L SR GDRV++
Sbjct: 15 RLQPHDPAFTFMDYEQDWDGVAITL-TWSQLYRRTLNVAQEL--SR--CGSTGDRVVISA 69
Query: 538 VPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILST------ 591
GL++V AF G ++A + VP+ P +GG + +++ VAIL+T
Sbjct: 70 PQGLEYVVAFLGALQAGRIAVPLSVP----QGGVTDERSDSVLSDSSPVAILTTSSAVDD 125
Query: 592 IGYHSAVRVGSWPNLPWLHTDSWVK-NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDA 650
+ H A R G P S ++ + +L A N F E + +LQ+TSGST
Sbjct: 126 VVQHVARRPGESPP-------SIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTP 178
Query: 651 KGVMITHGGLIHNV-KLMRKRYKSTS-----KTVLVSWLPQYHDMGLIGGLFTAMVGGST 704
GV+++H + N +LM + T + LVSWLP YHDMGL+ G+ ++GG
Sbjct: 179 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 238
Query: 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764
A+L SP++F++ P W+ M+ SA PNFAFEL RR ++ D + DL ++ +
Sbjct: 239 AVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAARR--TTDDDMAGRDLGNILTI 296
Query: 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDW---- 820
+ +E V+ T+KRF + F L + V+ P YGLAE V+V+ + P +D+
Sbjct: 297 LSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTES 356
Query: 821 ----QGRVCCG--------YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
+ C G Y+ P V RIV+ +T E + G GE+W+ + G
Sbjct: 357 LSAGHAKPCAGGGATSLISYMLPRSPIV--RIVDSDTCIECPD-GTVGEIWVHGDNVANG 413
Query: 869 YWGREELSQITFRNEL----QNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVY 924
YW + + S+ TF ++ + RTGD G + DGK FI GRIKDL+IV GRN
Sbjct: 414 YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGRIKDLLIVYGRNHS 473
Query: 925 SADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK 984
D+E T++ T G CA I VP + + K LV I E++ D+
Sbjct: 474 PDDIEATIQEITR----GRCAAISVPGDRSTEK------------LVAIIELKKRGDSDQ 517
Query: 985 DVI-------ENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
D + + + + HG++VA + L+ P ++ TTSGK++R C++Q+
Sbjct: 518 DAMARLGAIKREVTSALSSSHGLSVADLVLVAPGSIPITTSGKVRRGACVEQY 570
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Catalyzes the activation of long-chain fatty acids (C22-24 fatty acids) as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase Mas for further chain extension. Involved in the biosynthesis of mycoserates. Mycobacterium tuberculosis (taxid: 1773) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q02278|FAA28_MYCBO Long-chain-fatty-acid--AMP ligase FadD28 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD28 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 187/593 (31%), Positives = 293/593 (49%), Gaps = 81/593 (13%)
Query: 482 RITQKKTLFTWINEE----GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVY 537
R+ FT+++ E GVA+ T+ +L +A +L SR GDRV++
Sbjct: 15 RLQPHDPAFTFMDYEQDWDGVAITL-TWSQLYRRTLNVAREL--SR--CGSTGDRVVISA 69
Query: 538 VPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILST------ 591
GL++V AF G ++A + VP+ P +GG + +++ VAIL+T
Sbjct: 70 PQGLEYVVAFLGALQAGRIAVPLSVP----QGGVTDERSDSVLSDSSPVAILTTSSAVDD 125
Query: 592 IGYHSAVRVGSWPNLPWLHTDSWVK-NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDA 650
+ H A R G P S ++ + +L A N F E + +LQ+TSGST
Sbjct: 126 VVQHVARRPGESPP-------SIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTP 178
Query: 651 KGVMITHGGLIHNV-KLMRKRYKSTS-----KTVLVSWLPQYHDMGLIGGLFTAMVGGST 704
GV+++H + N +LM + T + LVSWLP YHDMGL+ G+ ++GG
Sbjct: 179 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 238
Query: 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764
A+L SP++F++ P W+ M+ SA PNFAFEL RR ++ D + DL ++ +
Sbjct: 239 AVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAARR--TTDDDMAGRDLGNILTI 296
Query: 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDW---- 820
+ +E V+ T+KRF + F L + V+ P YGLAE V+V+ + P +D+
Sbjct: 297 LSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTES 356
Query: 821 ----QGRVCCG--------YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
+ C G Y+ P V RIV+ +T E + G GE+W+ + G
Sbjct: 357 LSAGHAKPCAGGGATSLISYMLPRSPIV--RIVDSDTCIECPD-GTVGEIWVHGDNVANG 413
Query: 869 YWGREELSQITFRNEL----QNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVY 924
YW + + S+ TF ++ + RTGD G + DGK FI GRIKDL+IV GRN
Sbjct: 414 YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGRIKDLLIVYGRNHS 473
Query: 925 SADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK 984
D+E T++ T G CA I VP + + K LV I E++ D+
Sbjct: 474 PDDIEATIQEITR----GRCAAISVPGDRSTEK------------LVAIIELKKRGDSDQ 517
Query: 985 DVI-------ENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
D + + + + HG++VA + L+ P ++ TTSGK++R C++Q+
Sbjct: 518 DAMARLGAIKREVTSALSSSHGLSVADLVLVAPGSIPITTSGKVRRGACVEQY 570
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Catalyzes the activation of long-chain fatty acids (C22-24 fatty acids) as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase Mas for further chain extension. Mycobacterium bovis (taxid: 1765) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P95141|FAA29_MYCTU Long-chain-fatty-acid--AMP ligase FadD29 OS=Mycobacterium tuberculosis GN=fadD29 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 270/536 (50%), Gaps = 60/536 (11%)
Query: 530 GDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAIL 589
GDRV ++ GL+++ AF G ++A ++ VP+ P+ + G +I + + IL
Sbjct: 99 GDRVAILAPQGLEYIIAFMGVLQAGLIAVPL----PVPQFGIHDERISSALRDSAPSIIL 154
Query: 590 STIGYHSAVRVGSWPNLPWLHTDSW----VKNSKNLLAENVVCFTESQPDDLCFLQFTSG 645
+T V + P+ S ++ +L + + T + +LQ+TSG
Sbjct: 155 TTSSVIDEVTTYA-PHACAAQGQSAPIVVAVDALDLSSSRALDPTRFERPSTAYLQYTSG 213
Query: 646 STGDAKGVMITHGGLIHN-VKLMRKRYKSTSK--TVLVSWLPQYHDMGLIGGLFTAMVGG 702
ST GV+++H +I N V+LM + K + VSWLP YHDMGL+ G+ M+
Sbjct: 214 STRAPAGVVLSHKNVITNCVQLMSDYIGDSEKVPSTPVSWLPFYHDMGLMLGIILPMINQ 273
Query: 703 STAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMK 762
TA+L SP+ F++ P W++ ++K+RA S+ PNF FEL VRR +S D + DL ++
Sbjct: 274 DTAVLMSPMAFLQRPARWMQLLAKHRAQISSAPNFGFELAVRR--TSDDDMAGLDLGHVR 331
Query: 763 FLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG---KPIILD 819
++ AE V T++RF E PF LS+ + P YGLAE V+V+ A G G K + D
Sbjct: 332 TIVTGAERVNVATLRRFTERFAPFNLSETAIRPSYGLAEATVYVATA-GPGRAPKSVCFD 390
Query: 820 WQ------------GRVCCGYVDQNDPDVD-IRIVNPETSEEIGEPGKEGEVWISSPSAG 866
+Q G V P +RIV+PET E G GE+W+ + G
Sbjct: 391 YQQLSVGQAKRAENGSEGANLVSYGAPRASTVRIVDPETRME-NPAGTVGEIWVQGDNVG 449
Query: 867 IGYWGREELSQITFRNEL----QNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRN 922
+GYW + ++ TFR L + RTGDLG I +G+ FITGRIK+L++V G N
Sbjct: 450 LGYWRNPQQTEATFRARLVTPSPGTSEGPWLRTGDLGVIFEGELFITGRIKELLVVDGAN 509
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
Y D+E T+ + I G I VP+ D +++ LV I E+
Sbjct: 510 HYPEDIEATI----QEITGGRVVAIAVPD-----------DRTEK--LVTIIELMKRGRT 552
Query: 983 DKD-------VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031
D++ V + + + H + VA V ++ P ++ TTSGK++R +++++
Sbjct: 553 DEEEKNRLRTVKREVASAISRSHRLRVADVVMVAPGSIPVTTSGKVRRSASVERYL 608
|
Catalyzes the activation of the long-chain fatty acids (C22-24 fatty acids) as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase PpsA for further chain extension. Involved in the biosynthesis of phenolphthioceroL, which is an important intermedaite in the biosynthesis of phenolic glycolipid (mycosid B). Mycobacterium tuberculosis (taxid: 1773) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q7TXK5|FAA29_MYCBO Long-chain-fatty-acid--AMP ligase FadD29 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD29 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 270/536 (50%), Gaps = 60/536 (11%)
Query: 530 GDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAIL 589
GDRV ++ GL+++ AF G ++A ++ VP+ P+ + G +I + + IL
Sbjct: 99 GDRVAILAPQGLEYIIAFMGVLQAGLIAVPL----PVPQFGIHDERISSALRDSAPSIIL 154
Query: 590 STIGYHSAVRVGSWPNLPWLHTDSW----VKNSKNLLAENVVCFTESQPDDLCFLQFTSG 645
+T V + P+ S ++ +L + + T + +LQ+TSG
Sbjct: 155 TTSSVIDEVTTYA-PHACAAQGQSAPIVVAVDALDLSSSRALDPTRFERPSTAYLQYTSG 213
Query: 646 STGDAKGVMITHGGLIHN-VKLMRKRYKSTSK--TVLVSWLPQYHDMGLIGGLFTAMVGG 702
ST GV+++H +I N V+LM + K + VSWLP YHDMGL+ G+ M+
Sbjct: 214 STRAPAGVVLSHKNVITNCVQLMSDYIGDSEKVPSTPVSWLPFYHDMGLMLGIILPMINQ 273
Query: 703 STAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMK 762
TA+L SP+ F++ P W++ ++K+RA S+ PNF FEL VRR +S D + DL ++
Sbjct: 274 DTAVLMSPMAFLQRPARWMQLLAKHRAQISSAPNFGFELAVRR--TSDDDMAGLDLGHVR 331
Query: 763 FLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG---KPIILD 819
++ AE V T++RF E PF LS+ + P YGLAE V+V+ A G G K + D
Sbjct: 332 TIVTGAERVNVATLRRFTERFAPFNLSETAIRPSYGLAEATVYVATA-GPGRAPKSVCFD 390
Query: 820 WQ------------GRVCCGYVDQNDPDVD-IRIVNPETSEEIGEPGKEGEVWISSPSAG 866
+Q G V P +RIV+PET E G GE+W+ + G
Sbjct: 391 YQQLSVGQAKRTENGSEGANLVSYGAPRASTVRIVDPETRME-NPAGTVGEIWVQGDNVG 449
Query: 867 IGYWGREELSQITFRNEL----QNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRN 922
+GYW + ++ TFR L + RTGDLG I +G+ FITGRIK+L++V G N
Sbjct: 450 LGYWRNPQQTEATFRARLVTPSPGTSEGPWLRTGDLGVIFEGELFITGRIKELLVVDGAN 509
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
Y D+E T+ + I G I VP+ D +++ LV I E+
Sbjct: 510 HYPEDIEATI----QEITGGRVVAIAVPD-----------DRTEK--LVTIIELMKRGRT 552
Query: 983 DKD-------VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031
D++ V + + + H + VA V ++ P ++ TTSGK++R +++++
Sbjct: 553 DEEEKNRLRTVKREVASAISRSHRLRVADVVMVAPGSIPVTTSGKVRRSASVERYL 608
|
Catalyzes the activation of the long-chain fatty acids (C22-24 fatty acids) as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase PpsA for further chain extension. Involved in the biosynthesis of phenolphthioceroL, which is an important intermedaite in the biosynthesis of phenolic glycolipid (mycosid B). Mycobacterium bovis (taxid: 1765) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O53580|FAA32_MYCTU Long-chain-fatty-acid--AMP ligase FadD32 OS=Mycobacterium tuberculosis GN=fadD32 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 183/626 (29%), Positives = 295/626 (47%), Gaps = 72/626 (11%)
Query: 463 VEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQST-YEELDANASRIAHKLLT 521
+ FP ++L +++ W R + F + E V + + + A + +L
Sbjct: 21 IRFPANTNLVRHVEKWAKVRGDKLAYRFLDFSTERDGVARDILWSDFSARNRAVGARL-- 78
Query: 522 SRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISK 581
+ V +PGDRV ++ LD++ +FFG + + + VP+ DP + G + ++ +
Sbjct: 79 --QQVTQPGDRVAILCPQNLDYLISFFGALYSGRIAVPLF--DPAEPG--HVGRLHAVLD 132
Query: 582 SCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENV---VCFTESQPD--- 635
C IL+T VR ++ S + + + + V V T QP+
Sbjct: 133 DCAPSTILTTTDSAEGVR-------KFIRARSAKERPRVIAVDAVPTEVAATWQQPEANE 185
Query: 636 -DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694
+ +LQ+TSGST GV ITH L NV + + VSWLP +HDMGLI
Sbjct: 186 ETVAYLQYTSGSTRIPSGVQITHLNLPTNVVQVLNALEGQEGDRGVSWLPFFHDMGLITV 245
Query: 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA----THSAGPNFAFELMVRRLESSK 750
L +++G S + +P F++ P W+ +++ T SA PNFAFE R +
Sbjct: 246 LLASVLGHSFTFM-TPAAFVRRPGRWIRELARKPGETGGTFSAAPNFAFEHAAVR-GVPR 303
Query: 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY 810
D DLS++K ++ +EPV ++++F E P+GL Q + P YGLAE +FVS
Sbjct: 304 DDEPPLDLSNVKGILNGSEPVSPASMRKFFEAFAPYGLKQTAVKPSYGLAEATLFVSTTP 363
Query: 811 GQGKPIIL--------------------DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG 850
P ++ + +V G V ++ V IV+ +T+ E+
Sbjct: 364 MDEVPTVIHVDRDELNNQRFVEVAADAPNAVAQVSAGKVGVSEWAV---IVDADTASELP 420
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRK----------YTRTGDLGR 900
+ G+ GE+W+ + G GYWG+EE S TF+N L++ + RTGD G
Sbjct: 421 D-GQIGEIWLHGNNLGTGYWGKEEESAQTFKNILKSRISESRAEGAPDDALWVRTGDYGT 479
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVL------ 954
+I GRIKDL+I+ GRN Y D+E T + ST+ +R G A VP L
Sbjct: 480 YFKDHLYIAGRIKDLVIIDGRNHYPQDLECTAQESTKALRVGYAAAFSVPANQLPQTVFD 539
Query: 955 -STKGISVSDGSDQVGLVVIAEVRDG--KPVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011
S G+ LV++ E G K + ++++I+ + HGVTV V L+
Sbjct: 540 DSHAGLKFDPEDTSEQLVIVGERAAGTHKLDHQPIVDDIRAAIAVGHGVTVRDVLLVSAG 599
Query: 1012 TMSKTTSGKIKRFECLKQFVDGTLNT 1037
T+ +T+SGKI R C ++DG+L +
Sbjct: 600 TIPRTSSGKIGRRACRAAYLDGSLRS 625
|
Catalyzes the activation of long-chain fatty acids as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase (PKS) for further chain extension. Mycobacterium tuberculosis (taxid: 1773) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q7TTR2|FAA32_MYCBO Long-chain-fatty-acid--AMP ligase FadD32 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 183/626 (29%), Positives = 295/626 (47%), Gaps = 72/626 (11%)
Query: 463 VEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQST-YEELDANASRIAHKLLT 521
+ FP ++L +++ W R + F + E V + + + A + +L
Sbjct: 21 IRFPANTNLVRHVEKWAKVRGDKLAYRFLDFSTERDGVARDILWSDFSARNRAVGARL-- 78
Query: 522 SRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISK 581
+ V +PGDRV ++ LD++ +FFG + + + VP+ DP + G + ++ +
Sbjct: 79 --QQVTQPGDRVAILCPQNLDYLISFFGALYSGRIAVPLF--DPAEPG--HVGRLHAVLD 132
Query: 582 SCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENV---VCFTESQPD--- 635
C IL+T VR ++ S + + + + V V T QP+
Sbjct: 133 DCAPSTILTTTDSAEGVR-------KFIRARSAKERPRVIAVDAVPTEVAATWQQPEANE 185
Query: 636 -DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694
+ +LQ+TSGST GV ITH L NV + + VSWLP +HDMGLI
Sbjct: 186 ETVAYLQYTSGSTRIPSGVQITHLNLPTNVVQVLNALEGQEGDRGVSWLPFFHDMGLITV 245
Query: 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA----THSAGPNFAFELMVRRLESSK 750
L +++G S + +P F++ P W+ +++ T SA PNFAFE R +
Sbjct: 246 LLASVLGHSFTFM-TPAAFVRRPGRWIRELARKPGETGGTFSAAPNFAFEHAAVR-GVPR 303
Query: 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY 810
D DLS++K ++ +EPV ++++F E P+GL Q + P YGLAE +FVS
Sbjct: 304 DDEPPLDLSNVKGILNGSEPVSPASMRKFFEAFAPYGLKQTAVKPSYGLAEATLFVSTTP 363
Query: 811 GQGKPIIL--------------------DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG 850
P ++ + +V G V ++ V IV+ +T+ E+
Sbjct: 364 MDEVPTVIHVDRDELNNQRFVEVAADAPNAVAQVSAGKVGVSEWAV---IVDADTASELP 420
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRK----------YTRTGDLGR 900
+ G+ GE+W+ + G GYWG+EE S TF+N L++ + RTGD G
Sbjct: 421 D-GQIGEIWLHGNNLGTGYWGKEEESAQTFKNILKSRISESRAEGAPDDALWVRTGDYGT 479
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVL------ 954
+I GRIKDL+I+ GRN Y D+E T + ST+ +R G A VP L
Sbjct: 480 YFKDHLYIAGRIKDLVIIDGRNHYPQDLECTAQESTKALRVGYVAAFSVPANQLPQTVFD 539
Query: 955 -STKGISVSDGSDQVGLVVIAEVRDG--KPVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011
S G+ LV++ E G K + ++++I+ + HGVTV V L+
Sbjct: 540 DSHAGLKFDPEDTSEQLVIVGERAAGTHKLDHQPIVDDIRAAIAVGHGVTVRDVLLVSAG 599
Query: 1012 TMSKTTSGKIKRFECLKQFVDGTLNT 1037
T+ +T+SGKI R C ++DG+L +
Sbjct: 600 TIPRTSSGKIGRRACRAAYLDGSLRS 625
|
Catalyzes the activation of long-chain fatty acids as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase (PKS) for further chain extension. Mycobacterium bovis (taxid: 1765) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O07797|FAC23_MYCTU Probable long-chain-fatty-acid--CoA ligase FadD23 OS=Mycobacterium tuberculosis GN=fadD23 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 170/537 (31%), Positives = 266/537 (49%), Gaps = 68/537 (12%)
Query: 530 GDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAIL 589
GDR +++ GLD++ AF G ++A ++ VP+ P GG + +++ + + +L
Sbjct: 62 GDRAVILAPQGLDYIVAFLGALQAGLIAVPLSAP----LGGASDERVDAVVRDAKPNVVL 117
Query: 590 STIGYHSAV--RVGSWPNL---PWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTS 644
+T V RV P + P + D +S + N+V + +LQ+TS
Sbjct: 118 TTSAIMGDVVPRVTPPPGIASPPTVAVDQLDLDSP--IRSNIV---DDSLQTTAYLQYTS 172
Query: 645 GSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTV------LVSWLPQYHDMGLIGGLFTA 698
GST GVMIT+ ++ N + M Y + + V ++SWLP YHDMGL+ G+
Sbjct: 173 GSTRTPAGVMITYKNILANFQQMISAYFADTGAVPPLDLFIMSWLPFYHDMGLVLGVCAP 232
Query: 699 MVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDL 758
++ G A+L SP+ F++ P WL+ M++ SA PNFAFEL + + D + DL
Sbjct: 233 IIVGCGAVLTSPVAFLQRPARWLQLMAREGQAFSAAPNFAFELTAAK--AIDDDLAGLDL 290
Query: 759 SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY-------- 810
+K ++ +E V T+KRFV+ F L + + P YGLAE V+V+ +
Sbjct: 291 GRIKTILCGSERVHPATLKRFVDRFSRFNLREFAIRPAYGLAEATVYVATSQAGQPPEIR 350
Query: 811 ---------GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861
GQ KP G Y P V RIV+P T+ E PG GE+W+
Sbjct: 351 YFEPHELSAGQAKPCATG-AGTALVSYPLPQSPIV--RIVDPNTNTEC-PPGTIGEIWVH 406
Query: 862 SPSAGIGYWGREELSQITFRNELQNNRG----RKYTRTGDLGRIIDGKFFITGRIKDLII 917
+ GYW + + ++ TF L + RTGD G + + KFFI GRIKDL+I
Sbjct: 407 GDNVAGGYWEKPDETERTFGGALVAPSAGTPVGPWLRTGDSGFVSEDKFFIIGRIKDLLI 466
Query: 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR 977
V GRN D+E T++ T G CA I VP S+G ++ LV I E+
Sbjct: 467 VYGRNHSPDDIEATIQEITR----GRCAAIAVP-----------SNGVEK--LVAIVELN 509
Query: 978 DGKPVDKD----VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
+ +D + V + + + HG++V+ + L+ P ++ TTSGK++R EC+K +
Sbjct: 510 NRGNLDTERLSFVTREVTSAISTSHGLSVSDLVLVAPGSIPITTSGKVRRAECVKLY 566
|
Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension (Probable). Involved in the biosynthesis of sulfolipid 1 (SL-1). Mycobacterium tuberculosis (taxid: 1773) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2280 | ||||||
| 255544772 | 2278 | conserved hypothetical protein [Ricinus | 0.990 | 0.991 | 0.755 | 0.0 | |
| 225435546 | 2289 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.992 | 0.754 | 0.0 | |
| 297746376 | 2221 | unnamed protein product [Vitis vinifera] | 0.974 | 1.0 | 0.742 | 0.0 | |
| 147853255 | 2246 | hypothetical protein VITISV_022712 [Viti | 0.967 | 0.981 | 0.710 | 0.0 | |
| 357454395 | 2339 | Bifunctional protein aas [Medicago trunc | 0.995 | 0.970 | 0.670 | 0.0 | |
| 224072769 | 1078 | predicted protein [Populus trichocarpa] | 0.447 | 0.946 | 0.780 | 0.0 | |
| 38344819 | 2391 | OSJNBb0022F23.18 [Oryza sativa Japonica | 0.507 | 0.483 | 0.671 | 0.0 | |
| 297723229 | 2470 | Os04g0473900 [Oryza sativa Japonica Grou | 0.507 | 0.468 | 0.671 | 0.0 | |
| 116309764 | 2391 | OSIGBa0135C13.1 [Oryza sativa Indica Gro | 0.507 | 0.483 | 0.670 | 0.0 | |
| 218195035 | 2414 | hypothetical protein OsI_16281 [Oryza sa | 0.507 | 0.479 | 0.658 | 0.0 |
| >gi|255544772|ref|XP_002513447.1| conserved hypothetical protein [Ricinus communis] gi|223547355|gb|EEF48850.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3601 bits (9339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1738/2299 (75%), Positives = 1973/2299 (85%), Gaps = 40/2299 (1%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MD SI+DQ KLHPCLPVNT+IGIVGGGPSG+S AYAL +LGY NVT+LEK+HTVGGM
Sbjct: 1 MDTAVSIEDQLSKLHPCLPVNTKIGIVGGGPSGISAAYALTRLGYTNVTVLEKHHTVGGM 60
Query: 61 CESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRI 120
CESV IEEA ELEEMDSHKLALID STG+++DI V DDYVSV+SLTLELQDKAK+SG+I
Sbjct: 61 CESVVIEEAELELEEMDSHKLALIDSSTGKYEDINVKDDYVSVMSLTLELQDKAKDSGQI 120
Query: 121 GVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAGK 180
G+HA+S ASDLTPTYLE RG KSVPKSVAYGYTASGYG QDMPYAYIHEFTRTSMAGK
Sbjct: 121 GIHAISKFASDLTPTYLECRGLKSVPKSVAYGYTASGYGLPQDMPYAYIHEFTRTSMAGK 180
Query: 181 IRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIII 240
+RRFKGGYTSLWQK+++ LP EVHCN+EVLA+RR S VD+K+S GE + MEFDKIII
Sbjct: 181 LRRFKGGYTSLWQKVAEALPIEVHCNTEVLAVRRKSDGASVDIKNSRGEVKEMEFDKIII 240
Query: 241 SGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPV 300
SGAFP K+GK YRS T++ E E ++MD+ +LE ELFSKV+TIDYYTTVLK GLE +P+
Sbjct: 241 SGAFPFKDGKTYRSATAESKEPENEIMDLGDLEGELFSKVRTIDYYTTVLKTKGLEDMPM 300
Query: 301 GFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMGG 360
GFYYFGEYMDDPAT G PVAMQKF+ADTDIFLFWSYGN+VDITGPTVT++AIK V+NMG
Sbjct: 301 GFYYFGEYMDDPATTGRPVAMQKFYADTDIFLFWSYGNAVDITGPTVTDLAIKVVKNMGA 360
Query: 361 VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSM 420
+E V+LQRRF+YFPHV+S+D+KDGFY+RLE ELQG RNTYYVGGLMAFELTERN+SY+M
Sbjct: 361 EVEKVILQRRFRYFPHVSSQDVKDGFYERLESELQGLRNTYYVGGLMAFELTERNASYAM 420
Query: 421 ALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGYLKHWGT 480
ALMCKHFAN S P FPYVK EL ELPGVEFP+LS+L YLKHW
Sbjct: 421 ALMCKHFANYNSLPMFPYVK---------------ELGELPGVEFPDLSNLAAYLKHWAM 465
Query: 481 HRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540
H++TQ KTL+TWINEEG AV Q TY E+ ANAS I+HKLLTS+KP +KPGDRVLL++VPG
Sbjct: 466 HKVTQNKTLYTWINEEGAAVCQRTYAEVLANASCISHKLLTSQKPAVKPGDRVLLIHVPG 525
Query: 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV 600
LDFVDAFFGC+ AKV+PVPVLPPDPLQRGGQALLKIENI+K C AVAILST YHSAVR
Sbjct: 526 LDFVDAFFGCLIAKVIPVPVLPPDPLQRGGQALLKIENIAKCCNAVAILSTTRYHSAVRA 585
Query: 601 G-----------------SWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFT 643
G WP+LPW+HTDSW+KNS ++L + +E QPDDLCFLQFT
Sbjct: 586 GFVKNLISLTGKNGKSSARWPDLPWIHTDSWIKNSTDVLPRKMDYQSEPQPDDLCFLQFT 645
Query: 644 SGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703
SGSTGDAKGV+I+H GLIHNVKLMR+RYKSTSKTVLVSWLPQYHDMGL+GGLFTA+V G
Sbjct: 646 SGSTGDAKGVIISHSGLIHNVKLMRRRYKSTSKTVLVSWLPQYHDMGLVGGLFTALVSGG 705
Query: 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763
+AILFSPLTFIKNPLLWL+TMSKYRATHSAGPNFAFEL++RRLES ++KVR++DLSSM F
Sbjct: 706 SAILFSPLTFIKNPLLWLQTMSKYRATHSAGPNFAFELVIRRLESDREKVRNYDLSSMVF 765
Query: 764 LMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGR 823
LMVAAEPVRQ T+KRF+ELTRPFGL Q VMAPGYGLAENCVFVSCA+G+GKPI++DWQGR
Sbjct: 766 LMVAAEPVRQKTLKRFIELTRPFGLYQEVMAPGYGLAENCVFVSCAFGEGKPILIDWQGR 825
Query: 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNE 883
VCCGY + D DVDIRIV+PE EE EPGKEGE+WISS SAG+GYWGREE SQ TFRN
Sbjct: 826 VCCGYANPADADVDIRIVDPENGEEFEEPGKEGEIWISSASAGVGYWGREEHSQKTFRNV 885
Query: 884 LQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC 943
LQN+ GR YTRTGDLGRIID K FITGRIKDLIIVAGRN+YSADVEKTVES++E +RPGC
Sbjct: 886 LQNHPGRIYTRTGDLGRIIDEKLFITGRIKDLIIVAGRNIYSADVEKTVESASELLRPGC 945
Query: 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVA 1003
CAV+G PEEVLS+KGI V DGSDQVGLVVIAEVRDGKPVDKDV+ENIK RV EEHGV VA
Sbjct: 946 CAVVGAPEEVLSSKGILVPDGSDQVGLVVIAEVRDGKPVDKDVVENIKNRVTEEHGVPVA 1005
Query: 1004 SVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTP 1063
VKLIKPRT+SKTTSGKIKRFECLKQF +GTLN VP+P+F+KR RSF++GTCKEGRTP
Sbjct: 1006 CVKLIKPRTISKTTSGKIKRFECLKQFTEGTLNVVPDPIFSKRTFVRSFSSGTCKEGRTP 1065
Query: 1064 RPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQK 1123
RPQL+SSP+ K+ N++I+EFLKG+VSEQTGIP +S +SL SYGIDSIGVVRAAQK
Sbjct: 1066 RPQLLSSPIQKSKLGNREIIEFLKGIVSEQTGIPAGNISTIESLTSYGIDSIGVVRAAQK 1125
Query: 1124 LSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQLMTDSSFTPEPETDFDEFDMEVS 1183
LSDFLGVP+GAVDIFTATCIADLASFSENLVMKSQP L+ S P+ + D + E+S
Sbjct: 1126 LSDFLGVPIGAVDIFTATCIADLASFSENLVMKSQPHLIDSESHLPQLDMDSADLMTEIS 1185
Query: 1184 KARQCGIWIFQLLALVYVSVMLILPAYLSVSAFTTLVSAPQTLLDERPWLNYMFSLTFAP 1243
+A Q IWIFQLLAL+Y+S+ML LPAYLSVSAFT+L+SA T D+ W Y+ SL AP
Sbjct: 1186 RAHQIYIWIFQLLALIYISIMLSLPAYLSVSAFTSLISASHTSADKVHWSAYLISLASAP 1245
Query: 1244 LAWILCIFATCISITIFGNSFLRPNYTLNPEVSIWSADFVKWWALYKVHEVSCKVLAVYL 1303
LAW+LCI +TCISI GNSFLRPNY L P+ SIWS DFVKWWALYK E+S KV A +L
Sbjct: 1246 LAWVLCIVSTCISIAFLGNSFLRPNYALTPKTSIWSTDFVKWWALYKAQEISSKVFAEHL 1305
Query: 1304 RGTVFLNWWFEMLGAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF 1363
RGT FLN+WFE+LGA++GSSVLLDTV ITDPSLV IGDG VI+EGALIQ HEVKNG+LSF
Sbjct: 1306 RGTPFLNYWFEVLGARIGSSVLLDTVAITDPSLVSIGDGVVIAEGALIQGHEVKNGILSF 1365
Query: 1364 QPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSEGGKPILKSTNANYVQKGGAVSKIS 1423
PIKIAR SVGPYAV+QKGSVIGE V PLQK E K KS+ VQK GAV + +
Sbjct: 1366 NPIKIARNSSVGPYAVVQKGSVIGEGVHVPPLQKYEADKITFKSSK---VQK-GAVHQ-N 1420
Query: 1424 THRTQDEAIHQFIGIYIVSFLSTLSAAITYFLYIWLSQKPASPRHFAFLCISGAFHWLPF 1483
+Q+ AI+ F+GIY+V LST+SAAI Y +IWLSQ+PAS ++F+FLCISGAFHW+P
Sbjct: 1421 PDMSQNGAIYHFMGIYMVGLLSTVSAAIIYLFFIWLSQRPASLQYFSFLCISGAFHWVPL 1480
Query: 1484 TIIAYATMFASVPANPAYFAISTAVAYLFHGLVLSYLTCILTHFLAGKKEEKQTHLKAWL 1543
TIIAYATMF +V NP FAIS A+AYL HG++LS+LTC LTHFL+ K+E+KQ HLK WL
Sbjct: 1481 TIIAYATMFVTVALNPIDFAISVAIAYLAHGVILSFLTCTLTHFLSEKQEKKQFHLKTWL 1540
Query: 1544 CHRITIACHLRFAKLLSGTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLG 1603
HRITIACH+RFAKLLSGTEAFCIYLRLLGAK+G++CSIRAINPVS P+ +T+GAGVHLG
Sbjct: 1541 RHRITIACHIRFAKLLSGTEAFCIYLRLLGAKVGKHCSIRAINPVSDPESITIGAGVHLG 1600
Query: 1604 DFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQR 1663
DFSRII GFYSS GF GK+EVQ+NSV+GSQSLVLP SV+ +DVILGALSVAPM+SVLQ
Sbjct: 1601 DFSRIIAGFYSSSGFTRGKIEVQNNSVVGSQSLVLPGSVLQKDVILGALSVAPMNSVLQS 1660
Query: 1664 GGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSANLAATTLKVKSRYFHRIGVS 1723
GG+YIGSQ+PVMIKNTMHALDDRIEEMD+KY+KIVGNL+ANLAATTLKVKSRYFHRIGVS
Sbjct: 1661 GGVYIGSQTPVMIKNTMHALDDRIEEMDVKYRKIVGNLAANLAATTLKVKSRYFHRIGVS 1720
Query: 1724 GRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLN-- 1781
G+G L +Y+NI+GLP+H IF GK YP++VRHSNSLSADDDARIDARGAAIR+ SD
Sbjct: 1721 GKGHLQMYNNIKGLPEHNIFKAGKRYPIVVRHSNSLSADDDARIDARGAAIRLLSDEKEI 1780
Query: 1782 GNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRDAVWKSLRLSDSY 1841
G + SLLD+TLKTG AFYART+GDFATWLVCGL AREE VKRVPHIRDAVW SLR SDSY
Sbjct: 1781 GASFSLLDITLKTGKAFYARTVGDFATWLVCGLPAREEFVKRVPHIRDAVWMSLRNSDSY 1840
Query: 1842 AEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDND 1901
AE+HYYSNICRLFRFTDGQEMYVKFKLRPYD +I EDSG+VEP ILPPETGAIPRDD D
Sbjct: 1841 AELHYYSNICRLFRFTDGQEMYVKFKLRPYDANISEDSGKVEPTAILPPETGAIPRDDKD 1900
Query: 1902 TRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVG 1961
TRPLLFLA++FQRRVSSP GV YIFQLQIR +P DEA++DIALDCTKPWDE E+PYIDVG
Sbjct: 1901 TRPLLFLAEDFQRRVSSPGGVCYIFQLQIRAVPDDEAIRDIALDCTKPWDETEFPYIDVG 1960
Query: 1962 EISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEP 2021
EI+IDQNL+ EESE+LEFNPYL+C EIDVI AT+ SQSASIDHGRSLIYEICQHLRNGEP
Sbjct: 1961 EITIDQNLTGEESERLEFNPYLRCPEIDVIRATSCSQSASIDHGRSLIYEICQHLRNGEP 2020
Query: 2022 LPESWRIFLEQSDVKVDLSGCPMAAALEEKTEDKVTLERTWYQTLWSIFAQPLLQTVLPY 2081
LPE+W++F+EQSDV+VDLSGCPMAA LE+K KVTL RTWYQT W+I QPLLQTV PY
Sbjct: 2021 LPEAWKMFIEQSDVEVDLSGCPMAAVLEKKDSGKVTLARTWYQTSWAILGQPLLQTVFPY 2080
Query: 2082 FLIGLVIFTPLKWTLFLKENKILPLHWLLPMFWVSSGILAALACAAAKWVLVGKKKEGES 2141
FL+GLVIF PL LFLKE+K + LHWLLP+FW SSGILAAL C AKW+LVGKKKEGE+
Sbjct: 2081 FLMGLVIFAPLNLVLFLKESKKISLHWLLPLFWFSSGILAALVCVVAKWILVGKKKEGET 2140
Query: 2142 VQIWSKGVLMDTVWQAFRTLVGEYFVEMTSGSFLFVAWMKLMGAEIELGQGAYVDSMGAV 2201
IWSKGV MDT+WQAFRT+ GEYF+EMTSGS LF W+KLMG++I L QGAY+DSMGA
Sbjct: 2141 TLIWSKGVFMDTIWQAFRTIAGEYFIEMTSGSVLFNLWLKLMGSDINLHQGAYIDSMGAA 2200
Query: 2202 LNPEMVEMEGNGGCVGKEALLFGHIYEGDGGKVKFGKIRIGEGGFVGSRAAAMPGVRIEN 2261
LNPEMVE+E GGCVGKEA+LFGHIYEG+GGKVKFGKIR+GE GFVGSRA AMPGVR+E+
Sbjct: 2201 LNPEMVEIE-RGGCVGKEAILFGHIYEGEGGKVKFGKIRVGECGFVGSRAIAMPGVRVES 2259
Query: 2262 GGSLSSLSLAMKEEIVRSR 2280
GG+LS+LSLAMKEEIVR R
Sbjct: 2260 GGNLSALSLAMKEEIVRLR 2278
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435546|ref|XP_002283091.1| PREDICTED: uncharacterized protein LOC100253550 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3590 bits (9309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1733/2297 (75%), Positives = 1981/2297 (86%), Gaps = 25/2297 (1%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MD KSI+DQF KLHP LPV+TRIGIVGGGPSGLS AYALAKLGY NVT+LEKY TVGGM
Sbjct: 1 MDSRKSIEDQFSKLHPSLPVSTRIGIVGGGPSGLSAAYALAKLGYSNVTVLEKYQTVGGM 60
Query: 61 CESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRI 120
CES EIEE G+ELEEMDSHKL LID STG+ +DIKVADDYVSVISLTLELQDKAK+SGRI
Sbjct: 61 CESAEIEEIGSELEEMDSHKLTLIDSSTGKHKDIKVADDYVSVISLTLELQDKAKDSGRI 120
Query: 121 GVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAGK 180
GVHAVS++ASDLTP +LE RGFKSVPKSVA GYTASGYGFVQDMPYAYIHEFTRTSMAGK
Sbjct: 121 GVHAVSEIASDLTPEFLEARGFKSVPKSVACGYTASGYGFVQDMPYAYIHEFTRTSMAGK 180
Query: 181 IRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIII 240
IRRFKGGY + W+KLS+ LP EV CN+EVLA+RR S V VDVK+SNGE EV+EFD+III
Sbjct: 181 IRRFKGGYMNFWKKLSEMLPIEVRCNTEVLAVRRSSAGVSVDVKNSNGEVEVIEFDEIII 240
Query: 241 SGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPV 300
SG+FP KNGK YR+P S E ET VMDM+ELEK+LFSKVQTIDYYTTVLKI GLEH+PV
Sbjct: 241 SGSFPFKNGKTYRAPPSSSAEPETGVMDMNELEKKLFSKVQTIDYYTTVLKIKGLEHIPV 300
Query: 301 GFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMGG 360
GFYYF E+MDDPATIGHPVAMQ+F+ +TD+FLFWSYGNSVDI GPTVTE+AI T +NMGG
Sbjct: 301 GFYYFEEFMDDPATIGHPVAMQRFYNNTDVFLFWSYGNSVDIKGPTVTELAINTAKNMGG 360
Query: 361 VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSM 420
IE VVLQRRFKYFPH++S+DMK+GFY+++E ELQG RNTYYVGGLMAFELTERN+SY++
Sbjct: 361 EIEEVVLQRRFKYFPHISSQDMKEGFYEKVESELQGMRNTYYVGGLMAFELTERNASYAV 420
Query: 421 ALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGYLKHWGT 480
AL+CKHFAN+ +P FPYVK LFPLQSD W N K L+E PGV+FP+++SLDGYLKHWGT
Sbjct: 421 ALVCKHFANDTPSPTFPYVKRLFPLQSDGWGGNPKILDEFPGVKFPDIASLDGYLKHWGT 480
Query: 481 HRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540
H + Q KTL+TWINEEGV V+Q TY EL ANAS IAH LL ++KP+ KPGDRVLLVY+PG
Sbjct: 481 HEVIQNKTLYTWINEEGVVVSQRTYRELHANASCIAHNLLLNQKPLFKPGDRVLLVYIPG 540
Query: 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV 600
LDF+DAFFGC+RAK+LPVPVLPPDPLQRGGQALLKIENI+KSC A+AILSTI YH+ V
Sbjct: 541 LDFIDAFFGCLRAKLLPVPVLPPDPLQRGGQALLKIENIAKSCNALAILSTIRYHAGVCA 600
Query: 601 GS-----------------WPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFT 643
GS WPNLPWLHTDSW+K S+NLL E++ +E QPDDLCFLQFT
Sbjct: 601 GSVKSLISFTGKNGKNSARWPNLPWLHTDSWIKYSRNLLQEDIADQSEPQPDDLCFLQFT 660
Query: 644 SGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703
SGSTGDAKGVMITHGGLIHNVKLMR+RYKSTSKTVLVSWLPQYHDMGLIGGLF+A+V G
Sbjct: 661 SGSTGDAKGVMITHGGLIHNVKLMRRRYKSTSKTVLVSWLPQYHDMGLIGGLFSALVSGG 720
Query: 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763
+A+LFSP++FIKNPLLWL+TMSK++ATHSAGPNFAFEL+VRRLES KD V +++LSSM F
Sbjct: 721 SAVLFSPMSFIKNPLLWLQTMSKFQATHSAGPNFAFELVVRRLESGKDTVHNYNLSSMIF 780
Query: 764 LMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGR 823
LMVAAEPVRQ T+KRFV+LT PFGL + V+APGYGLAENCVFVSCAYG+GKPI++DWQ R
Sbjct: 781 LMVAAEPVRQNTLKRFVKLTSPFGLCEEVLAPGYGLAENCVFVSCAYGEGKPILVDWQER 840
Query: 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNE 883
VCCGYVD + DVDIR+V+PET EE E GKEGE+WISSPSAG+GYWGREELS TFRNE
Sbjct: 841 VCCGYVDTENADVDIRVVDPETGEEQEEVGKEGEIWISSPSAGVGYWGREELSGKTFRNE 900
Query: 884 LQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC 943
LQN+ GR+YTRTGDLGRIIDGK FITGRIKDLIIVAGRN+Y+ADVEKTVESS+E +RPGC
Sbjct: 901 LQNHPGRRYTRTGDLGRIIDGKLFITGRIKDLIIVAGRNIYAADVEKTVESSSELLRPGC 960
Query: 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVA 1003
CAVIGVPEE+LS KGIS+ D SDQVGLVVIAEVRDGK V KDVIE I+ V EEHGVTVA
Sbjct: 961 CAVIGVPEEILSQKGISLPDHSDQVGLVVIAEVRDGKHVGKDVIEQIQAHVAEEHGVTVA 1020
Query: 1004 SVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTP 1063
S+KLIKP+T+SKTTSGKIKRF+C++QF DGTL+ VPEP+ +K+ L RSFTTGTC+EG TP
Sbjct: 1021 SIKLIKPKTISKTTSGKIKRFDCIRQFSDGTLSLVPEPILSKKVLHRSFTTGTCREGNTP 1080
Query: 1064 RPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQK 1123
RP+L P+ + ++S +DIVEFLKGLVSEQTGIPI + A++SL SYGIDSIGVVRAAQK
Sbjct: 1081 RPELNKYPLTNPRLSKEDIVEFLKGLVSEQTGIPIKNIFASESLSSYGIDSIGVVRAAQK 1140
Query: 1124 LSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQLMTDSSFTPEPETDFDEFDMEVS 1183
LSDFLGVPVGAVD+FTATCIADLA+FSENLV KS Q MT S+ PEPETD E ME++
Sbjct: 1141 LSDFLGVPVGAVDMFTATCIADLANFSENLVRKSHHQYMTAPSYVPEPETDLSELVMEIA 1200
Query: 1184 KARQCGIWIFQLLALVYVSVMLILPAYLSVSAFTTLVSAPQTLLDERPWLNYMFSLTFAP 1243
+ + GIW FQLLAL+Y+SV+LI+PAYLSVSAF +L+S L+D WL+Y+ SL FAP
Sbjct: 1201 PSHKLGIWFFQLLALIYISVLLIIPAYLSVSAFISLLSTCCNLIDGTSWLDYLISLAFAP 1260
Query: 1244 LAWILCIFATCISITIFGNSFLRPNYTLNPEVSIWSADFVKWWALYKVHEVSCKVLAVYL 1303
LAW+LCIF+TCI I GNSFL+PNY L PE+SIWS DFVKWW LYKV EV+ KVLAV+L
Sbjct: 1261 LAWLLCIFSTCICIAYLGNSFLQPNYALTPEISIWSKDFVKWWGLYKVQEVASKVLAVHL 1320
Query: 1304 RGTVFLNWWFEMLGAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF 1363
RGTVFL WFEMLGA++GSSVLLDT+DITDPSLV IGDGAVI+EGALIQSHEVKNG+LSF
Sbjct: 1321 RGTVFLKCWFEMLGARIGSSVLLDTIDITDPSLVSIGDGAVIAEGALIQSHEVKNGILSF 1380
Query: 1364 QPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSEGGKPILKSTNANYVQKGGAVSKIS 1423
PI+I + SVGPYA+IQKGSV+ E AEV QKSEGG + +S G+V
Sbjct: 1381 LPIRIGQNCSVGPYALIQKGSVLAEGAEVQASQKSEGGTSVFQSNK-------GSVLPKD 1433
Query: 1424 THRTQDEAIHQFIGIYIVSFLSTLSAAITYFLYIWLSQKPASPRHFAFLCISGAFHWLPF 1483
+ Q EAI+ F+GIY+V FLS+L+AA+ YFLY+WLS+ P S +HF FLCISGAFHW PF
Sbjct: 1434 SRNAQIEAIYHFLGIYMVGFLSSLAAALFYFLYLWLSRSPPSFQHFTFLCISGAFHWFPF 1493
Query: 1484 TIIAYATMFASVPANPAYFAISTAVAYLFHGLVLSYLTCILTHFLAGKKEEKQTHLKAWL 1543
TIIAY TMF+S +P YFAIS AVAYL HGL+LS+LTC +T FLA K + KQ+H+K WL
Sbjct: 1494 TIIAYTTMFSSASLSPPYFAISVAVAYLAHGLILSFLTCTMTRFLARKPDTKQSHMKTWL 1553
Query: 1544 CHRITIACHLRFAKLLSGTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLG 1603
HRI IACHLRFAKLLSGTEA CIYLRLLGAKIG +CSIRAINPVS P+ +++GAGVH+G
Sbjct: 1554 RHRIMIACHLRFAKLLSGTEALCIYLRLLGAKIGSHCSIRAINPVSEPELISIGAGVHMG 1613
Query: 1604 DFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQR 1663
DFSRIIPGFYSS GF G+++V+DNSV+GSQSLVLP SV+ +DVILGALSVAPM+SVLQR
Sbjct: 1614 DFSRIIPGFYSSSGFTCGQIKVEDNSVVGSQSLVLPGSVLQKDVILGALSVAPMNSVLQR 1673
Query: 1664 GGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSANLAATTLKVKSRYFHRIGVS 1723
GG+YIGSQ+PVMIKNT+HALD RIEEMD+KYK+IVGNL+ANLA TT+KVKSRYFHRIGV
Sbjct: 1674 GGVYIGSQTPVMIKNTLHALDQRIEEMDVKYKRIVGNLAANLAVTTMKVKSRYFHRIGVG 1733
Query: 1724 GRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGN 1783
G+G L IYDNI+G PDHKIF PGK YPV++RHSNSL+ADDDARIDARGAA+RI D G+
Sbjct: 1734 GKGILKIYDNIKGFPDHKIFQPGKSYPVLIRHSNSLAADDDARIDARGAALRILPDEPGS 1793
Query: 1784 TSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRDAVWKSLRLSDSYAE 1843
S LLDLTLKTGNAFYARTI DFATWLVCGLAAREEHVKR+P +RDAVW SLR +DS+AE
Sbjct: 1794 DSPLLDLTLKTGNAFYARTIADFATWLVCGLAAREEHVKRIPRVRDAVWASLRRADSFAE 1853
Query: 1844 MHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTR 1903
+HYYSNICRLFRF DGQEMYVK KLRPYDE EDSG++EP GILPPETGAIPRDD DTR
Sbjct: 1854 LHYYSNICRLFRFKDGQEMYVKLKLRPYDEKFSEDSGKIEPIGILPPETGAIPRDDTDTR 1913
Query: 1904 PLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEI 1963
PLLFLA++FQ+RV+S GVRY+FQ+Q +P+P DEA D ALDCTKPWDE E+P+IDVGEI
Sbjct: 1914 PLLFLAEDFQQRVNSAGGVRYVFQMQFQPVPGDEATCDSALDCTKPWDENEFPHIDVGEI 1973
Query: 1964 SIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEPLP 2023
+DQ L+ EESE+LEFNP+L+C+E+DVI A++SSQSASIDHGRSLIYEICQHLRN EPLP
Sbjct: 1974 IVDQMLTREESEQLEFNPFLQCHEVDVIRASSSSQSASIDHGRSLIYEICQHLRNREPLP 2033
Query: 2024 ESWRIFLEQSDVKVDLSGCPMAAALEEKTEDKVTLERTWYQTLWSIFAQPLLQTVLPYFL 2083
E+WRIFLEQSD KVDLSGCPMAAAL++K VTL RTWYQTLW IFAQPLLQTVLPYF+
Sbjct: 2034 EAWRIFLEQSDFKVDLSGCPMAAALQKKDVQNVTLSRTWYQTLWVIFAQPLLQTVLPYFI 2093
Query: 2084 IGLVIFTPLKWTLFLKENKILPLHWLLPMFWVSSGILAALACAAAKWVLVGKKKEGESVQ 2143
+GLV+F PL W + K K LPLHWLLP FW+SSG LAAL C AKW LVGKKKEGE+
Sbjct: 2094 MGLVVFAPLNWVFYWKNTKKLPLHWLLPFFWLSSGTLAALVCIVAKWGLVGKKKEGETAL 2153
Query: 2144 IWSKGVLMDTVWQAFRTLVGEYFVEMTSGSFLFVAWMKLMGAEIELGQGAYVDSMGAVLN 2203
IWS+ V MDT+WQAFRTLVGEYF+EM +GSFLF WM+LMG+ IEL +GAYVDSMGAVLN
Sbjct: 2154 IWSRSVFMDTIWQAFRTLVGEYFMEMITGSFLFALWMRLMGSNIELNEGAYVDSMGAVLN 2213
Query: 2204 PEMVEMEGNGGCVGKEALLFGHIYEGDGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENGG 2263
PEMVE+E GGCVG+EALLFGHIYEG+GGKVKFGKI IGEGGFVGSRA MPGVR+E GG
Sbjct: 2214 PEMVEIE-RGGCVGREALLFGHIYEGEGGKVKFGKISIGEGGFVGSRAVVMPGVRVETGG 2272
Query: 2264 SLSSLSLAMKEEIVRSR 2280
SLS LSLAMK EIV+ R
Sbjct: 2273 SLSDLSLAMKGEIVKPR 2289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746376|emb|CBI16432.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3487 bits (9042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1693/2280 (74%), Positives = 1937/2280 (84%), Gaps = 59/2280 (2%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MD KSI+DQF KLHP LPV+TRIGIVGGGPSGLS AYALAKLGY NVT+LEKY TVGGM
Sbjct: 1 MDSRKSIEDQFSKLHPSLPVSTRIGIVGGGPSGLSAAYALAKLGYSNVTVLEKYQTVGGM 60
Query: 61 CESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRI 120
CES EIEE G+ELEEMDSHKL LID STG+ +DIKVADDYVSVISLTLELQDKAK+SGRI
Sbjct: 61 CESAEIEEIGSELEEMDSHKLTLIDSSTGKHKDIKVADDYVSVISLTLELQDKAKDSGRI 120
Query: 121 GVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAGK 180
GVHAVS++ASDLTP +LE RGFKSVPKSVA GYTASGYGFVQDMPYAYIHEFTRTSMAGK
Sbjct: 121 GVHAVSEIASDLTPEFLEARGFKSVPKSVACGYTASGYGFVQDMPYAYIHEFTRTSMAGK 180
Query: 181 IRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIII 240
IRRFKGGY + W+KLS+ LP EV CN+EVLA+RR S V VDVK+SNGE EV+EFD+III
Sbjct: 181 IRRFKGGYMNFWKKLSEMLPIEVRCNTEVLAVRRSSAGVSVDVKNSNGEVEVIEFDEIII 240
Query: 241 SGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPV 300
SG+FP KNGK YR+P S E ET VMDM+ELEK+LFSKVQTIDYYTTVLKI GLEH+PV
Sbjct: 241 SGSFPFKNGKTYRAPPSSSAEPETGVMDMNELEKKLFSKVQTIDYYTTVLKIKGLEHIPV 300
Query: 301 GFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMGG 360
GFYYF E+MDDPATIGHPVAMQ+F+ +TD+FLFWSYGNSVDI GPTVTE+AI T +NMGG
Sbjct: 301 GFYYFEEFMDDPATIGHPVAMQRFYNNTDVFLFWSYGNSVDIKGPTVTELAINTAKNMGG 360
Query: 361 VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSM 420
IE VVLQRRFKYFPH++S+DMK+GFY+++E ELQG RNTYYVGGLMAFELTERN+SY++
Sbjct: 361 EIEEVVLQRRFKYFPHISSQDMKEGFYEKVESELQGMRNTYYVGGLMAFELTERNASYAV 420
Query: 421 ALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGYLKHWGT 480
AL+CKHFAN+ +P FPYVK LFPLQSD W N K L+E PGV+FP+++SLDGYLKHWGT
Sbjct: 421 ALVCKHFANDTPSPTFPYVKRLFPLQSDGWGGNPKILDEFPGVKFPDIASLDGYLKHWGT 480
Query: 481 HRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540
H + Q KTL+TWINEEGV V+Q TY EL ANAS IAH LL ++KP+ KPGDRVLLVY+PG
Sbjct: 481 HEVIQNKTLYTWINEEGVVVSQRTYRELHANASCIAHNLLLNQKPLFKPGDRVLLVYIPG 540
Query: 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV 600
LDF+DAFFGC+RAK+LPVPVLPPDPLQRGGQALLKIENI+KSC A+AILSTI YH+A
Sbjct: 541 LDFIDAFFGCLRAKLLPVPVLPPDPLQRGGQALLKIENIAKSCNALAILSTIRYHAA--- 597
Query: 601 GSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL 660
WPNLPWLHTDSW+K S+NLL E++ +E QPDDLCFLQFTSGSTGDAKGVMITHGGL
Sbjct: 598 -RWPNLPWLHTDSWIKYSRNLLQEDIADQSEPQPDDLCFLQFTSGSTGDAKGVMITHGGL 656
Query: 661 IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLW 720
IHNVKLMR+RYKSTSKTVLVSWLPQYHDMGLIGGLF+A+V G +A+LFSP++FIKNPLLW
Sbjct: 657 IHNVKLMRRRYKSTSKTVLVSWLPQYHDMGLIGGLFSALVSGGSAVLFSPMSFIKNPLLW 716
Query: 721 LETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780
L+TMSK++ATHSAGPNFAFEL+VRRLES KD V +++LSSM FLMVAAEPVRQ T+KRFV
Sbjct: 717 LQTMSKFQATHSAGPNFAFELVVRRLESGKDTVHNYNLSSMIFLMVAAEPVRQNTLKRFV 776
Query: 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRI 840
+LT PFGL + V+APGYGLAENCVFVSCAYG+GKPI++DWQ RVCCGYVD + DVDIR+
Sbjct: 777 KLTSPFGLCEEVLAPGYGLAENCVFVSCAYGEGKPILVDWQERVCCGYVDTENADVDIRV 836
Query: 841 VNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
V+PET EE E GKEGE+WISSPSAG+GYWGREELS TFRNELQN+ GR+YTRTGDLGR
Sbjct: 837 VDPETGEEQEEVGKEGEIWISSPSAGVGYWGREELSGKTFRNELQNHPGRRYTRTGDLGR 896
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
IIDGK FITGRIKDLIIVAGRN+Y+ADVEKTVESS+E +RPGCCA
Sbjct: 897 IIDGKLFITGRIKDLIIVAGRNIYAADVEKTVESSSELLRPGCCA--------------- 941
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
VRDGK V KDVIE I+ V EEHGVTVAS+KLIKP+T+SKTTSGK
Sbjct: 942 ---------------VRDGKHVGKDVIEQIQAHVAEEHGVTVASIKLIKPKTISKTTSGK 986
Query: 1021 IKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNK 1080
IKRF+C++QF DGTL+ VPEP+ +K+ L P+ + ++S +
Sbjct: 987 IKRFDCIRQFSDGTLSLVPEPILSKK--------------------LNKYPLTNPRLSKE 1026
Query: 1081 DIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTA 1140
DIVEFLKGLVSEQTGIPI + A++SL SYGIDSIGVVRAAQKLSDFLGVPVGAVD+FTA
Sbjct: 1027 DIVEFLKGLVSEQTGIPIKNIFASESLSSYGIDSIGVVRAAQKLSDFLGVPVGAVDMFTA 1086
Query: 1141 TCIADLASFSENLVMKSQPQLMTDSSFTPEPETDFDEFDMEVSKARQCGIWIFQLLALVY 1200
TCIADLA+FSENLV KS Q MT S+ PEPETD E ME++ + + GIW FQLLAL+Y
Sbjct: 1087 TCIADLANFSENLVRKSHHQYMTAPSYVPEPETDLSELVMEIAPSHKLGIWFFQLLALIY 1146
Query: 1201 VSVMLILPAYLSVSAFTTLVSAPQTLLDERPWLNYMFSLTFAPLAWILCIFATCISITIF 1260
+SV+LI+PAYLSVSAF +L+S L+D WL+Y+ SL FAPLAW+LCIF+TCI I
Sbjct: 1147 ISVLLIIPAYLSVSAFISLLSTCCNLIDGTSWLDYLISLAFAPLAWLLCIFSTCICIAYL 1206
Query: 1261 GNSFLRPNYTLNPEVSIWSADFVKWWALYKVHEVSCKVLAVYLRGTVFLNWWFEMLGAKL 1320
GNSFL+PNY L PE+SIWS DFVKWW LYKV EV+ KVLAV+LRGTVFL WFEMLGA++
Sbjct: 1207 GNSFLQPNYALTPEISIWSKDFVKWWGLYKVQEVASKVLAVHLRGTVFLKCWFEMLGARI 1266
Query: 1321 GSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVI 1380
GSSVLLDT+DITDPSLV IGDGAVI+EGALIQSHEVKNG+LSF PI+I + SVGPYA+I
Sbjct: 1267 GSSVLLDTIDITDPSLVSIGDGAVIAEGALIQSHEVKNGILSFLPIRIGQNCSVGPYALI 1326
Query: 1381 QKGSVIGEEAEVAPLQKSEGGKPILKSTNANYVQKGGAVSKISTHRTQDEAIHQFIGIYI 1440
QKGSV+ E AEV QKSEGG + +S AN G+V + Q EAI+ F+GIY+
Sbjct: 1327 QKGSVLAEGAEVQASQKSEGGTSVFQSNKAN----NGSVLPKDSRNAQIEAIYHFLGIYM 1382
Query: 1441 VSFLSTLSAAITYFLYIWLSQKPASPRHFAFLCISGAFHWLPFTIIAYATMFASVPANPA 1500
V FLS+L+AA+ YFLY+WLS+ P S +HF FLCISGAFHW PFTIIAY TMF+S +P
Sbjct: 1383 VGFLSSLAAALFYFLYLWLSRSPPSFQHFTFLCISGAFHWFPFTIIAYTTMFSSASLSPP 1442
Query: 1501 YFAISTAVAYLFHGLVLSYLTCILTHFLAGKKEEKQTHLKAWLCHRITIACHLRFAKLLS 1560
YFAIS AVAYL HGL+LS+LTC +T FLA K + KQ+H+K WL HRI IACHLRFAKLLS
Sbjct: 1443 YFAISVAVAYLAHGLILSFLTCTMTRFLARKPDTKQSHMKTWLRHRIMIACHLRFAKLLS 1502
Query: 1561 GTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIF 1620
GTEA CIYLRLLGAKIG +CSIRAINPVS P+ +++GAGVH+GDFSRIIPGFYSS GF
Sbjct: 1503 GTEALCIYLRLLGAKIGSHCSIRAINPVSEPELISIGAGVHMGDFSRIIPGFYSSSGFTC 1562
Query: 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680
G+++V+DNSV+GSQSLVLP SV+ +DVILGALSVAPM+SVLQRGG+YIGSQ+PVMIKNT+
Sbjct: 1563 GQIKVEDNSVVGSQSLVLPGSVLQKDVILGALSVAPMNSVLQRGGVYIGSQTPVMIKNTL 1622
Query: 1681 HALDDRIEEMDMKYKKIVGNLSANLAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDH 1740
HALD RIEEMD+KYK+IVGNL+ANLA TT+KVKSRYFHRIGV G+G L IYDNI+G PDH
Sbjct: 1623 HALDQRIEEMDVKYKRIVGNLAANLAVTTMKVKSRYFHRIGVGGKGILKIYDNIKGFPDH 1682
Query: 1741 KIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFYA 1800
KIF PGK YPV++RHSNSL+ADDDARIDARGAA+RI D G+ S LLDLTLKTGNAFYA
Sbjct: 1683 KIFQPGKSYPVLIRHSNSLAADDDARIDARGAALRILPDEPGSDSPLLDLTLKTGNAFYA 1742
Query: 1801 RTIGDFATWLVCGLAAREEHVKRVPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQ 1860
RTI DFATWLVCGLAAREEHVKR+P +RDAVW SLR +DS+AE+HYYSNICRLFRF DGQ
Sbjct: 1743 RTIADFATWLVCGLAAREEHVKRIPRVRDAVWASLRRADSFAELHYYSNICRLFRFKDGQ 1802
Query: 1861 EMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPS 1920
EMYVK KLRPYDE EDSG++EP GILPPETGAIPRDD DTRPLLFLA++FQ+RV+S
Sbjct: 1803 EMYVKLKLRPYDEKFSEDSGKIEPIGILPPETGAIPRDDTDTRPLLFLAEDFQQRVNSAG 1862
Query: 1921 GVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFN 1980
GVRY+FQ+Q +P+P DEA D ALDCTKPWDE E+P+IDVGEI +DQ L+ EESE+LEFN
Sbjct: 1863 GVRYVFQMQFQPVPGDEATCDSALDCTKPWDENEFPHIDVGEIIVDQMLTREESEQLEFN 1922
Query: 1981 PYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEPLPESWRIFLEQSDVKVDLS 2040
P+L+C+E+DVI A++SSQSASIDHGRSLIYEICQHLRN EPLPE+WRIFLEQSD KVDLS
Sbjct: 1923 PFLQCHEVDVIRASSSSQSASIDHGRSLIYEICQHLRNREPLPEAWRIFLEQSDFKVDLS 1982
Query: 2041 GCPMAAALEEKTEDKVTLERTWYQTLWSIFAQPLLQTVLPYFLIGLVIFTPLKWTLFLKE 2100
GCPMAAAL++K VTL RTWYQTLW IFAQPLLQTVLPYF++GLV+F PL W + K
Sbjct: 1983 GCPMAAALQKKDVQNVTLSRTWYQTLWVIFAQPLLQTVLPYFIMGLVVFAPLNWVFYWKN 2042
Query: 2101 NKILPLHWLLPMFWVSSGILAALACAAAKWVLVGKKKEGESVQIWSKGVLMDTVWQAFRT 2160
K LPLHWLLP FW+SSG LAAL C AKW LVGKKKEGE+ IWS+ V MDT+WQAFRT
Sbjct: 2043 TKKLPLHWLLPFFWLSSGTLAALVCIVAKWGLVGKKKEGETALIWSRSVFMDTIWQAFRT 2102
Query: 2161 LVGEYFVEMTSGSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEA 2220
LVGEYF+EM +GSFLF WM+LMG+ IEL +GAYVDSMGAVLNPEMVE+E GGCVG+EA
Sbjct: 2103 LVGEYFMEMITGSFLFALWMRLMGSNIELNEGAYVDSMGAVLNPEMVEIE-RGGCVGREA 2161
Query: 2221 LLFGHIYEGDGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKEEIVRSR 2280
LLFGHIYEG+GGKVKFGKI IGEGGFVGSRA MPGVR+E GGSLS LSLAMK EIV+ R
Sbjct: 2162 LLFGHIYEGEGGKVKFGKISIGEGGFVGSRAVVMPGVRVETGGSLSDLSLAMKGEIVKPR 2221
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853255|emb|CAN80678.1| hypothetical protein VITISV_022712 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3340 bits (8660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1649/2321 (71%), Positives = 1901/2321 (81%), Gaps = 116/2321 (4%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MD KSI+DQF KLHP LPV+TRIGIVGGGPSGLS AYALAKLGY NVT+LEKY TVGGM
Sbjct: 1 MDSRKSIEDQFSKLHPSLPVSTRIGIVGGGPSGLSAAYALAKLGYSNVTVLEKYQTVGGM 60
Query: 61 CESVEIE------------------------EAGAELEEMDSHKLALIDGSTGEFQDIKV 96
CES EIE E G+ELEEMDSHKL LID STG+ +DIKV
Sbjct: 61 CESAEIEGNIYDLGGQVLAANSAPVIFHWAKEIGSELEEMDSHKLTLIDSSTGKHKDIKV 120
Query: 97 ADDYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTAS 156
ADDYVSVISLTLELQDKAK+SGRIGVHAVS++ASDLTP +LE RGFKSVPKSVA GYTAS
Sbjct: 121 ADDYVSVISLTLELQDKAKDSGRIGVHAVSEIASDLTPEFLEARGFKSVPKSVACGYTAS 180
Query: 157 GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDS 216
GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGY + W+KLS+ LP EV CN+EVLA+RR S
Sbjct: 181 GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYMNFWKKLSEMLPIEVRCNTEVLAVRRSS 240
Query: 217 TTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKEL 276
V VDVK+SNGE EV+EFD+IIISG+FP KNGK YR+P S E ET VMDM+ELEK+L
Sbjct: 241 AGVSVDVKNSNGEVEVIEFDEIIISGSFPFKNGKTYRAPPSSSAEPETGVMDMNELEKKL 300
Query: 277 FSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSY 336
FSKVQTIDYYTTVLKI GLEH+PVGFYYF E+MDDPATIGHPVAMQ+F+ +TD+FLFWSY
Sbjct: 301 FSKVQTIDYYTTVLKIKGLEHIPVGFYYFEEFMDDPATIGHPVAMQRFYNNTDVFLFWSY 360
Query: 337 GNSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQG 396
GNSVDI GPTVTE+AI T +NMGG IE VVLQRRFKYFPH++S+DMK+GFY+++E ELQG
Sbjct: 361 GNSVDIKGPTVTELAINTAKNMGGEIEEVVLQRRFKYFPHISSQDMKEGFYEKVESELQG 420
Query: 397 QRNTYYVGGLMAFELTERNSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKE 456
RNTYYVGGLMAFELTERN+SY++AL+CKHFAN+ + FPYVK LFPLQSD W N K
Sbjct: 421 MRNTYYVGGLMAFELTERNASYAVALVCKHFANDTPSXTFPYVKRLFPLQSDXWGGNPKI 480
Query: 457 LEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIA 516
L+E PGV+FP+++SLDGYLKHWGTH + Q KTL+TWINEEGV V+Q TY EL ANAS IA
Sbjct: 481 LDEFPGVKFPDIASLDGYLKHWGTHEVIQNKTLYTWINEEGVVVSQRTYRELHANASCIA 540
Query: 517 HKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKI 576
H LL ++KP+ KPGDRVLLVY+PGLDF+DAFFGC+RAK+LPVPVLPPDPLQRGGQALLKI
Sbjct: 541 HNLLLNQKPLFKPGDRVLLVYIPGLDFIDAFFGCLRAKLLPVPVLPPDPLQRGGQALLKI 600
Query: 577 ENISKSCGAVAILSTIGYHSAVRVGS-----------------WPNLPWLHTDSWVKNSK 619
ENI+KSC A+AILSTI YH+ V GS WPNLPWLHTDSW+K S+
Sbjct: 601 ENIAKSCNALAILSTIRYHAGVCAGSVKSLISFTGKNGKNSARWPNLPWLHTDSWIKYSR 660
Query: 620 NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVL 679
NLL E++ +E QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR+RYKSTSKTVL
Sbjct: 661 NLLQEDIADQSEPQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRRRYKSTSKTVL 720
Query: 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAF 739
VSWLPQYHDMGLIGGLF+A+V G +A+LFSP++FIKNPLLWL+TMSK++ATHSAGPNFAF
Sbjct: 721 VSWLPQYHDMGLIGGLFSALVSGGSAVLFSPMSFIKNPLLWLQTMSKFQATHSAGPNFAF 780
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799
EL+VRRLES KD V +++LSSM FLMVAAEPVRQ T+KRFV+LT PFGL + V+APGYGL
Sbjct: 781 ELVVRRLESGKDTVHNYNLSSMIFLMVAAEPVRQNTLKRFVKLTSPFGLCEEVLAPGYGL 840
Query: 800 AENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859
AENCVFVSCAYG+GKPI++DWQ RVCCGYVD + DVDIR+V+PET EE E GKEGE+W
Sbjct: 841 AENCVFVSCAYGEGKPILVDWQERVCCGYVDTENADVDIRVVDPETGEEQEEVGKEGEIW 900
Query: 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVA 919
ISSPSAG+GYWGREELS TFRNELQN+ GR+YTRTGDLGRIIDGK FITGRIKDLIIVA
Sbjct: 901 ISSPSAGVGYWGREELSGKTFRNELQNHPGRRYTRTGDLGRIIDGKLFITGRIKDLIIVA 960
Query: 920 GRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDG 979
GRN+Y+ADVEKTVESS+E +RPGCCAVIGVPEE+LS KGIS+ D SDQVGLVVIAEVRDG
Sbjct: 961 GRNIYAADVEKTVESSSELLRPGCCAVIGVPEEILSQKGISLPDHSDQVGLVVIAEVRDG 1020
Query: 980 KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVP 1039
K V KDVIE I+ V EEHGVTVAS+KLIKP+T+SKTTSGKIKRF+C++QF DGTL+ VP
Sbjct: 1021 KHVGKDVIEQIQAHVAEEHGVTVASIKLIKPKTISKTTSGKIKRFDCIRQFSDGTLSLVP 1080
Query: 1040 EPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPIT 1099
EP+ +K+ L RSFTTGTC+EG TPRP+L P+ + ++S +DIVEFLKGLVSEQTGIPI
Sbjct: 1081 EPILSKKVLHRSFTTGTCREGNTPRPELNKYPLTNPRLSKEDIVEFLKGLVSEQTGIPIK 1140
Query: 1100 KVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQP 1159
+ A++SL SYGIDSIGVVRAAQKLSDFLGVPVGAVD+FTATCIADLA+FSENLV KS
Sbjct: 1141 NIFASESLSSYGIDSIGVVRAAQKLSDFLGVPVGAVDMFTATCIADLANFSENLVRKSHH 1200
Query: 1160 QLMTDSSFTPEPETDFDEFDMEVSKARQCGIWIFQLLALVYVSVMLILPAYLSVSAFTTL 1219
Q MT S+ PEPETD E ME++ + + GIW FQLLAL+Y+SV+LI+PAYLSVSAF +L
Sbjct: 1201 QYMTTPSYVPEPETDLSELVMEIAPSHKLGIWFFQLLALIYISVLLIIPAYLSVSAFISL 1260
Query: 1220 VSAPQTLLDERPWLNYMFSLTFAPLAWILCIFATCISITIFGNSFLRPNYTLNPEVSIWS 1279
+S L+D WL+Y+ SL FAPLAW+LCIF+TCI I GNSFL+PNY L PE+SIWS
Sbjct: 1261 LSTCCNLIDGTSWLDYLISLAFAPLAWLLCIFSTCICIAYLGNSFLQPNYALTPEISIWS 1320
Query: 1280 ADFVKWWALYKVHEVSCKVLAVYLRGTVFLNWWFEMLGAKLGSSVLLDTVDITDPSLVLI 1339
DFVKWW LYKV EV+ KVLAV+LRGTVFL WFEMLGA++GSSVLLDT+DITDPSLV I
Sbjct: 1321 KDFVKWWGLYKVQEVASKVLAVHLRGTVFLKCWFEMLGARIGSSVLLDTIDITDPSLVSI 1380
Query: 1340 GDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSE 1399
GDGAVI+EGALIQSHEVKNG+LSF PI+I + SVGPYA+IQKGSV+ E AEV QKSE
Sbjct: 1381 GDGAVIAEGALIQSHEVKNGILSFLPIRIGQNCSVGPYALIQKGSVLAEGAEVQASQKSE 1440
Query: 1400 GGKPILKSTNANYVQKGGAVSKISTHRTQDEAIHQFIGIYIVSFLSTLSAAITYFLYIWL 1459
GG + +S AN V KG + K + Q EAI+ F+GIY+V FLS+L+AA+ YFLY+WL
Sbjct: 1441 GGTSVFQSNKANNVPKGSVLPK-DSRNAQIEAIYHFLGIYMVGFLSSLAAALFYFLYLWL 1499
Query: 1460 SQKPASPRHFAFLCISGAFHWLPFTIIAYATMFASVPANPAYFAISTAVAYLFHGLVLSY 1519
S+ P S +HF FLCISGAFHW PFTIIAY TMF+S +P YFAIS AVAYL HGL+LS+
Sbjct: 1500 SRSPPSFQHFTFLCISGAFHWFPFTIIAYTTMFSSASLSPPYFAISVAVAYLAHGLILSF 1559
Query: 1520 LTCILTHFLAGKKEEKQTHLKAWLCHRITIACHLRFAKLLSGTEAFCIYLRLLGAKIGRY 1579
LTC +T FLA K + KQ+H+K WL HRI IACHLRFAKLLSGTEA CIYLRLLGAKIG +
Sbjct: 1560 LTCTMTRFLARKPDTKQSHMKTWLRHRIMIACHLRFAKLLSGTEALCIYLRLLGAKIGSH 1619
Query: 1580 CSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP 1639
CSIRAINPVS P+ +++GAGVH+GDFSRIIPGFYSS GF G+++V+DNSV+GSQSLVLP
Sbjct: 1620 CSIRAINPVSEPELISIGAGVHMGDFSRIIPGFYSSSGFTCGQIKVEDNSVVGSQSLVLP 1679
Query: 1640 NSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVG 1699
SV+ +DVILGALSVAPM+SVLQRGG+YIGSQ+PVMIKNT+HALD RIEEMD+KYK+IVG
Sbjct: 1680 GSVLQKDVILGALSVAPMNSVLQRGGVYIGSQTPVMIKNTLHALDQRIEEMDVKYKRIVG 1739
Query: 1700 NLSANLAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSL 1759
NL+ANLA TT+KVKSRYFHRIGV G+G L IYDNI+G PDHKIF PGK YPV++RHSNSL
Sbjct: 1740 NLAANLAVTTMKVKSRYFHRIGVGGKGILKIYDNIKGFPDHKIFQPGKSYPVLIRHSNSL 1799
Query: 1760 SADDDARIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREE 1819
+ADDDARIDARGAA+RI D G+ S LLDLTLKTGNAFYARTI DFATWLVCGLAAREE
Sbjct: 1800 AADDDARIDARGAALRILPDEPGSDSPLLDLTLKTGNAFYARTIADFATWLVCGLAAREE 1859
Query: 1820 HVKRVPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDS 1879
HVKR+P +RDAVW SLR +DS+AE+HYYSNICRLFRF DGQEMYVKFKLRPYDE EDS
Sbjct: 1860 HVKRIPRVRDAVWASLRRADSFAELHYYSNICRLFRFKDGQEMYVKFKLRPYDEKFSEDS 1919
Query: 1880 GEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAM 1939
G++EP GILPPETGAIPRDD DTRPLLFLA++FQ+RV+S GVRY+FQ+Q +P+P DEA
Sbjct: 1920 GKIEPIGILPPETGAIPRDDTDTRPLLFLAEDFQQRVNSAGGVRYVFQMQFQPVPGDEAT 1979
Query: 1940 QDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQS 1999
D ALDCTKPWDE E+P+IDVGEI +DQ L+ EESE+LEFNP+L+C+E+DVI A++SSQS
Sbjct: 1980 CDSALDCTKPWDENEFPHIDVGEIIVDQMLTREESEQLEFNPFLQCHEVDVIRASSSSQS 2039
Query: 2000 ASIDHGRSLIYEICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPMAAALEEKTEDKVTLE 2059
ASIDHGRSLIYEICQHLRN EPLPE+WRIFLEQSD KVDLSGCPMAAAL++K VTL
Sbjct: 2040 ASIDHGRSLIYEICQHLRNREPLPEAWRIFLEQSDFKVDLSGCPMAAALQKKDVQNVTLS 2099
Query: 2060 RTWYQTLWSIFAQPLLQTVLPYFLIGLVIFTPLKWTLFLKENKILPLHWLLPMFWVSSGI 2119
RTWYQTLW IFAQPLLQTVLPYF++GLV+F PL W + K K LPLHWL+
Sbjct: 2100 RTWYQTLWVIFAQPLLQTVLPYFIMGLVVFAPLNWVFYWKNTKKLPLHWLM--------- 2150
Query: 2120 LAALACAAAKWVLVGKKKEGESVQIWSKGVLMDTVWQAFRTLVGEYFVEMTSGSFLFVAW 2179
G ++++ ++G +D++ ++ VE+ G V
Sbjct: 2151 -------------------GSNIEL-NEGAYVDSM----GAVLNPEMVEIERGG--CVGR 2184
Query: 2180 MKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFGHIYEGDGGKVKFGKI 2239
L+ I G+G V FG I G+G
Sbjct: 2185 EALLFGHIYEGEGGKVK--------------------------FGKISIGEG-------- 2210
Query: 2240 RIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKEEIVRSR 2280
GFVGSRA MPGVR+E GGSLS LSLAMK EIV+ R
Sbjct: 2211 -----GFVGSRAVVMPGVRVETGGSLSDLSLAMKGEIVKPR 2246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454395|ref|XP_003597478.1| Bifunctional protein aas [Medicago truncatula] gi|355486526|gb|AES67729.1| Bifunctional protein aas [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3294 bits (8541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1576/2350 (67%), Positives = 1925/2350 (81%), Gaps = 81/2350 (3%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MDP +SI++QF KLHP LP+NTRIGIVG GPSG+S AYAL++LGY N+T+LEK+H VGGM
Sbjct: 1 MDPERSIEEQFSKLHPSLPLNTRIGIVGAGPSGISAAYALSRLGYNNITVLEKHHAVGGM 60
Query: 61 CESVEIE------------------------EAGAELEEMDSHKLALIDGSTGEFQDIKV 96
CESVEIE E + LEE+DSHKLA+ID S+G++QDIKV
Sbjct: 61 CESVEIEGKVYDLGGQVLAASSAPVIFHLAKETESALEELDSHKLAIIDTSSGKYQDIKV 120
Query: 97 ADDYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTAS 156
ADDYVSV+SLTL++Q+K K SGR GVHAVS++A+DLTP +LE G KS+P SVA+GYTAS
Sbjct: 121 ADDYVSVMSLTLKIQEKVKNSGRFGVHAVSEVAADLTPEFLEHHGLKSIPNSVAFGYTAS 180
Query: 157 GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDS 216
GYGF+QDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQK+++ LP ++HCN+EVLAIRR+
Sbjct: 181 GYGFIQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKIAESLPIKLHCNTEVLAIRRNF 240
Query: 217 TTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSP-----------TSKPTESETQ 265
+V V+VK SN E E MEFDKII+SG FP+K G+ YRS S +SE +
Sbjct: 241 DSVNVNVKSSN-ETETMEFDKIIVSGNFPLKYGRTYRSAPSNCIDRYLMRLSNVADSEAE 299
Query: 266 VMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFF 325
VMD ++EKELFSKV+ DYYTT KI GL+H+PVGFYYF EYMDDP+TIG+PVAMQKF+
Sbjct: 300 VMDASDIEKELFSKVEINDYYTTAFKIRGLDHMPVGFYYFNEYMDDPSTIGNPVAMQKFY 359
Query: 326 ADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVNSKDMKDG 385
ADTDIFLFWSYGNS DI GPT+TE+AIK ++++GG +E+ +LQRRFKYFPHV+S+DMK+G
Sbjct: 360 ADTDIFLFWSYGNSFDIKGPTITELAIKAIKSIGGEVESFILQRRFKYFPHVSSQDMKNG 419
Query: 386 FYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSMALMCKHFANNYSTPEFPYVKNLFPL 445
FY++LE ELQG RNTYYVGGLMAFELTERNSSY+MALMCK+FA++ P FPY K+LFPL
Sbjct: 420 FYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALMCKNFASSSDLPVFPYTKSLFPL 479
Query: 446 QSDNWARNFKELEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTY 505
Q++ + K+L ELPGV+FP L +L+GYLKHWGTH +T+ +TL++WINE+G + + TY
Sbjct: 480 QTEFQRKEPKQLAELPGVQFPNLPTLNGYLKHWGTHPVTEDRTLYSWINEQGTVIGKRTY 539
Query: 506 EELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDP 565
E NAS IA KLL S+KP GD+VLLVYVPGLDF+DAFFGC+RAKV+PVPV+PPDP
Sbjct: 540 REQHLNASCIASKLLKSQKP----GDKVLLVYVPGLDFIDAFFGCLRAKVIPVPVIPPDP 595
Query: 566 LQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG---------------SWPNLPWLH 610
+QR GQALLKIENI+KSCG VAILST+ YHSAVR G WP+LPWLH
Sbjct: 596 MQRSGQALLKIENIAKSCGIVAILSTVAYHSAVRAGLVKNFITLKNGKSSARWPSLPWLH 655
Query: 611 TDSWVKNSKNLLAENVVCFT-ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK 669
TD+WV NS++ EN+ ESQ D+CFLQFTSGSTGDAKGVMITHGGLIHNVKLM+
Sbjct: 656 TDTWVNNSRSYALENLYDDQRESQSGDICFLQFTSGSTGDAKGVMITHGGLIHNVKLMQS 715
Query: 670 RYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA 729
RYKSTS+TVLVSWLPQYHDMGLIGGLFTA+V G TA+LFSP+TFIK PLLW+ETMSKY+A
Sbjct: 716 RYKSTSRTVLVSWLPQYHDMGLIGGLFTALVSGGTALLFSPMTFIKKPLLWIETMSKYQA 775
Query: 730 THSAGPNFAFELMVRRLESS-KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788
THSAGPNFAFEL+VRRLESS KDK+++ DLSSM FLMVAAEPVRQ T+KRF+ELT P+GL
Sbjct: 776 THSAGPNFAFELVVRRLESSDKDKLQNLDLSSMIFLMVAAEPVRQKTLKRFLELTGPYGL 835
Query: 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEE 848
SQ MAPGYGLAENCVFVSCA+G+G PI +DWQGRVCCGY+ + DVDIRIV+P+ EE
Sbjct: 836 SQKAMAPGYGLAENCVFVSCAFGEGNPIFVDWQGRVCCGYIHPGNADVDIRIVDPDGIEE 895
Query: 849 IGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFI 908
+ E GKEGE+WISSPSAGIGYWG+EELSQ TF+N+L N+ GR YTRTGDLGRIIDGK FI
Sbjct: 896 LQEDGKEGEIWISSPSAGIGYWGKEELSQSTFQNQLPNHPGRFYTRTGDLGRIIDGKLFI 955
Query: 909 TGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQV 968
TGRIKDLIIVAGRN+YS+DVEKTVESS+E +RPGCCAVIGVPEE LS KGIS+ DGSDQV
Sbjct: 956 TGRIKDLIIVAGRNIYSSDVEKTVESSSELLRPGCCAVIGVPEETLSAKGISLPDGSDQV 1015
Query: 969 GLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLK 1028
GLVVIAE+RDGKPV KDV+++I+TRV EEHGV VASVKLIKPRT+SKTTSGKI+RFECLK
Sbjct: 1016 GLVVIAELRDGKPVSKDVVDDIQTRVAEEHGVNVASVKLIKPRTISKTTSGKIRRFECLK 1075
Query: 1029 QFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLV-SSPVASKKMSNKDIVEFLK 1087
QF DGTLN VP+P+ TK+KL RSFTTGTCKEGRTPR QL S+P+ S ++ NK+I+EFLK
Sbjct: 1076 QFADGTLNLVPQPVLTKKKLVRSFTTGTCKEGRTPRAQLANSTPITSPRIGNKEIMEFLK 1135
Query: 1088 GLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLA 1147
L+SEQ GIP++K+S TD++ +YG+DSI VV+A QKLSDFLGV V A+D+F+A+CI +L
Sbjct: 1136 RLISEQAGIPVSKISVTDNMSTYGMDSISVVKATQKLSDFLGVTVAAIDVFSASCIQELV 1195
Query: 1148 SFSENLVMKSQPQLMTDSSFTPEPETDFDEFDMEVSKARQCGIWIFQLLALVYVSVMLIL 1207
+FSENL++KSQP L+++ S+ PE ET+ EF ++VSK+ Q I + QLLALV++S++++
Sbjct: 1196 NFSENLLLKSQPHLLSNPSYAPEAETESTEFIVDVSKSHQWSIHLLQLLALVFISILVVS 1255
Query: 1208 PAYLSVSAFTTLVSAPQTLLDERPWLNYMFSLTFAPLAWILCIFATCISITIFGNSFLRP 1267
PAYLS++ F +++ P NY+FSL APL+WILCI +TCI I+ FGNSFLRP
Sbjct: 1256 PAYLSITTFQIFIASFGKSAYGIPLSNYIFSLALAPLSWILCIASTCICISFFGNSFLRP 1315
Query: 1268 NYTLNPEVSIWSADFVKWWALYKVHEVSCKVLAVYLRGTVFLNWWFEMLGAKLGSSVLLD 1327
NY L PE+SI+S FVKWWALYK E+S KVLA +L+GTVFLN+WFE+LGA++GSSVL+D
Sbjct: 1316 NYALTPEMSIYSIAFVKWWALYKSQEISSKVLATHLKGTVFLNYWFEILGARIGSSVLID 1375
Query: 1328 TVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIG 1387
TVDITDPSLV IGD AVISEG L+QSHEVKNG+LS PI+I R S+GPYAVIQKGS+I
Sbjct: 1376 TVDITDPSLVSIGDEAVISEGVLVQSHEVKNGILSLHPIRIGRNSSIGPYAVIQKGSIIK 1435
Query: 1388 EEAEVAPLQKSEGGKPILKSTNANYVQKGGAVSKISTHRTQDEAIHQFIGIYIVSFLSTL 1447
E AE+ PLQK EGG+ +LK+ N V K AV ++ +T+ +AI+ F+GIY+V+F+S+L
Sbjct: 1436 EGAEIQPLQKVEGGQHVLKTAKLNNV-KENAVLLVTMTKTESDAIYHFLGIYLVAFVSSL 1494
Query: 1448 SAAITYFLYIWLSQKPASPRHFAFLCISGAFHWLPFTIIAYATMFASVPANPAYFAISTA 1507
+AAITYF+Y W QKPAS + F+F+CI GAFHW+PFTI AYATMF+ V +NP FAIS
Sbjct: 1495 AAAITYFMYTWFFQKPASIQSFSFVCICGAFHWIPFTITAYATMFSEVQSNPIAFAISFT 1554
Query: 1508 VAYLFHGLVLSYLTCILTHFLAGKKEEKQTHLKAWLCHRITIACHLRFAKLLSGTEAFCI 1567
AYL HGL+L+ LTC LT L K +KQTH K WL +++ ++CHL+FAKLLSGTEAFC+
Sbjct: 1555 CAYLLHGLILTSLTCSLTRLL---KSQKQTHFKTWLQNQMILSCHLKFAKLLSGTEAFCV 1611
Query: 1568 YLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQD 1627
YLRL+GAKIG++CSIRAINPVS P+ + +G GVHLGDFSRII GF S G+ GK+EVQD
Sbjct: 1612 YLRLIGAKIGKHCSIRAINPVSNPELMLIGDGVHLGDFSRIITGFNYSDGYTCGKIEVQD 1671
Query: 1628 NSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTMHA-LDDR 1686
NSV+GSQSL+LP S+V ++VILGALSVAPM+S+L G +YIGSQ+ V ++N+ +A D+R
Sbjct: 1672 NSVVGSQSLILPGSLVEKNVILGALSVAPMNSILHEGSVYIGSQTRVTMRNSGNASFDER 1731
Query: 1687 IEEMDMKYKKIVGNLSANLAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPG 1746
IEEMD+ YKKIV NL+ANLA TT+ K+RYFHRIGVSG+G L IY+ ++G+P HKIFHPG
Sbjct: 1732 IEEMDIDYKKIVANLAANLAVTTMNAKARYFHRIGVSGKGHLKIYNKLEGIPMHKIFHPG 1791
Query: 1747 KCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSS------LLDLTLKTGNAFYA 1800
K YP+IVRHSNSLSADDDARIDARGAA+RIFSD SS L+DLTLKTGNAFYA
Sbjct: 1792 KSYPIIVRHSNSLSADDDARIDARGAALRIFSDEPATDSSDSPPPTLIDLTLKTGNAFYA 1851
Query: 1801 RTIGDFATWLVCGLAAREEHVKRVPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQ 1860
RT+ DFA+WLVCGLAAREE VK PH+R+AVW SLR +DSYAEMHYYSN CRL RF DGQ
Sbjct: 1852 RTLADFASWLVCGLAAREELVKSAPHVREAVWNSLRHADSYAEMHYYSNYCRLMRFEDGQ 1911
Query: 1861 EMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPS 1920
+MYVKFKLRP+D SI ED G+V P GILPPETGAI RD+ND+RPLLFLA++FQ RVSS +
Sbjct: 1912 QMYVKFKLRPHDTSISEDKGKVNPTGILPPETGAIARDENDSRPLLFLANDFQNRVSSSN 1971
Query: 1921 GVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFN 1980
GV Y+FQ+Q+RP+P D +++ALDCTKPWDE E+P+ DVGEI++++N+ E+S+KLEFN
Sbjct: 1972 GVSYVFQIQVRPVPDDTQGREVALDCTKPWDENEFPFTDVGEINLNENIPMEDSQKLEFN 2031
Query: 1981 PYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEPLPESWRIFLEQSDVKVDLS 2040
PYLK NE+D I AT+S+QSASIDHGRSLIYEICQH+RN +PLPE+WR ++QS+VKVDLS
Sbjct: 2032 PYLKSNELDTITATSSTQSASIDHGRSLIYEICQHVRNRQPLPEAWRNLVQQSNVKVDLS 2091
Query: 2041 GCPMAAA---------LEEKTEDKVTLERTWYQTLWSIFAQPLLQTVLPYFLIGLVIFTP 2091
CP+A++ L++K +TL RTWYQT ++F QPLLQT+LP+ +IGL F P
Sbjct: 2092 CCPIASSAPLPEKEPLLKKKATPALTLTRTWYQTFSALFIQPLLQTILPHMVIGLAAFVP 2151
Query: 2092 LKWTLFLKENKILPLHWLLPMFWVSSGILAALACAAAKWVLVGKKKEGESVQIWSKGVLM 2151
L ++ K+ K LPLHWLLP FW+ SG +AAL+C AK VLVGK+K GE++ IWSK ++
Sbjct: 2152 LNMVVYFKDVKKLPLHWLLPFFWILSGFIAALSCVIAKRVLVGKRKLGETIPIWSKKIVF 2211
Query: 2152 DTVWQAFRTLVGEYFVEMTSGSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEG 2211
D+ WQA RTLVG+YF+++T+GSFL V WMK+MGAEIE+ G YVDS GA+LNPEMV++E
Sbjct: 2212 DSTWQAIRTLVGDYFMDITNGSFLSVIWMKMMGAEIEM-DGVYVDSNGAMLNPEMVKIE- 2269
Query: 2212 NGGCVGKEALLFGHIYEG-DGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENGGSLSSLSL 2270
GGC+G+EALLFGHIYEG +GG VK+G+I+IGE GFVGSRA MPGV +E SL+SLSL
Sbjct: 2270 RGGCIGREALLFGHIYEGEEGGMVKYGEIKIGEDGFVGSRAVVMPGVEVECEASLASLSL 2329
Query: 2271 AMKEEIVRSR 2280
AMK EI+RSR
Sbjct: 2330 AMKGEIIRSR 2339
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072769|ref|XP_002303872.1| predicted protein [Populus trichocarpa] gi|222841304|gb|EEE78851.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1675 bits (4338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1060 (78%), Positives = 919/1060 (86%), Gaps = 40/1060 (3%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MDP SI+DQF KLHPCLPVNTRIGIVGGGPSG+S AYALAKLGY+NVT+LEK+HTVGGM
Sbjct: 1 MDPLVSIEDQFVKLHPCLPVNTRIGIVGGGPSGISAAYALAKLGYQNVTVLEKHHTVGGM 60
Query: 61 CESVEIE------------------------EAGAELEEMDSHKLALIDGSTGEFQDIKV 96
CESV+IE E G+ELEEMDSHKLA ID STG++QDIKV
Sbjct: 61 CESVDIEGRIYDLGGQVLAKNSAPVIFHLAKEVGSELEEMDSHKLAHIDSSTGKYQDIKV 120
Query: 97 ADDYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTAS 156
ADDYV+V+SLTLELQDKAK+SGRIGVHAVS+LA+DLTPTYLE RGFKSVPKSVAYGYTAS
Sbjct: 121 ADDYVAVMSLTLELQDKAKDSGRIGVHAVSELAADLTPTYLESRGFKSVPKSVAYGYTAS 180
Query: 157 GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDS 216
GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQK+S+ LP EV+C ++VLAIRR+S
Sbjct: 181 GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKISESLPIEVNCKTDVLAIRRNS 240
Query: 217 TTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKEL 276
+V VDVK +NGE + MEFDKIIISG+FP NG YR P K TESET+V D+ E+E+
Sbjct: 241 DSVRVDVKRNNGEIQEMEFDKIIISGSFPFTNGNTYRFPAEKSTESETKVTDLSEVERYF 300
Query: 277 FSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSY 336
F KVQTIDYYTTVLKI GLE +PVGFYYFGEYM+DPATIGHPVAMQKF+ADTDIFLFWSY
Sbjct: 301 FRKVQTIDYYTTVLKIKGLEDMPVGFYYFGEYMEDPATIGHPVAMQKFYADTDIFLFWSY 360
Query: 337 GNSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQG 396
GNS DI PTV E+A K V +MG +E VLQRRFKYFPHV S++MKDGFY++LE ELQG
Sbjct: 361 GNSFDIKRPTVAELAKKVVMSMGAKVEEEVLQRRFKYFPHVGSQEMKDGFYEKLESELQG 420
Query: 397 QRNTYYVGGLMAFELTERNSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKE 456
QRNTYYVGGLMAFELTERNSSY+M L+CKHFANN S P FPYVK+LF L+SD W RN KE
Sbjct: 421 QRNTYYVGGLMAFELTERNSSYAMDLICKHFANNNSVPMFPYVKSLFSLKSDCWDRNPKE 480
Query: 457 LEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIA 516
L E GVEFP+LS+LDGYLKHWGT +T+ KTL+TWI E+G V Q TY EL A AS IA
Sbjct: 481 LGE--GVEFPDLSTLDGYLKHWGTESMTKDKTLYTWIGEDGAVVCQRTYAELHAKASCIA 538
Query: 517 HKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKI 576
KLLTSRKPVIKPGDRVLLVYVPGLDF+DAFFGC+RAKVLPVPVLPPDPLQRGGQALLKI
Sbjct: 539 RKLLTSRKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPVLPPDPLQRGGQALLKI 598
Query: 577 ENISKSCGAVAILSTIGYHSAVRVGS-------------WPNLPWLHTDSWVKNSKNLLA 623
E+I+KSC AVAILST+ YHSAVR GS WPNLPW+HTDSW+K+SK L
Sbjct: 599 ESIAKSCNAVAILSTLLYHSAVRAGSVKNLISLAGKNGKWPNLPWMHTDSWLKDSKVLAP 658
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
N+ +E QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM++ YKSTSKTVLVSWL
Sbjct: 659 GNIAYESECQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMKRIYKSTSKTVLVSWL 718
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMV 743
PQYHDMGLIGGLFTA+V G +AILFSP+TFIKNPLLWL+ MSKY ATHSAGPNFAFEL++
Sbjct: 719 PQYHDMGLIGGLFTALVSGGSAILFSPMTFIKNPLLWLQIMSKYNATHSAGPNFAFELLI 778
Query: 744 RRLE-SSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAEN 802
RRLE + KDKVR+FDLSS+ FLMVAAEPVRQ T+KRFVELTRPFGLSQ VMAPGYGLAEN
Sbjct: 779 RRLEYADKDKVRNFDLSSLIFLMVAAEPVRQRTLKRFVELTRPFGLSQEVMAPGYGLAEN 838
Query: 803 CVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862
CVFVSCAYG+GKPI++DWQGRVCCGYV+ N D+DIRIV+PE++EE+ E GKEGE+WISS
Sbjct: 839 CVFVSCAYGEGKPILVDWQGRVCCGYVEPNGEDIDIRIVDPESNEELKESGKEGEIWISS 898
Query: 863 PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRN 922
PSAGIGYWGREELSQ TFRN LQN+ GRKYTRTGDLGRIIDGK FITGRIKDLIIVAGRN
Sbjct: 899 PSAGIGYWGREELSQSTFRNVLQNHPGRKYTRTGDLGRIIDGKVFITGRIKDLIIVAGRN 958
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
+YS DVEKTVES++E +RPGCCAVIGVPEEVLS+KGIS+ D SDQVGLVVIAEVRD KPV
Sbjct: 959 IYSTDVEKTVESASELLRPGCCAVIGVPEEVLSSKGISLPDCSDQVGLVVIAEVRDAKPV 1018
Query: 983 DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIK 1022
DKDV+ENI++RV EEHGVTVAS+KLIKPRT+SKTTSGKIK
Sbjct: 1019 DKDVVENIRSRVAEEHGVTVASIKLIKPRTISKTTSGKIK 1058
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38344819|emb|CAE02881.2| OSJNBb0022F23.18 [Oryza sativa Japonica Group] gi|125590716|gb|EAZ31066.1| hypothetical protein OsJ_15162 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1660 bits (4299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1188 (67%), Positives = 966/1188 (81%), Gaps = 31/1188 (2%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MDP +SIDDQF KLHP LPV+TRIGIVG GPSGLS AYALAKLGYRNVTL EK HTV GM
Sbjct: 1 MDPKRSIDDQFSKLHPSLPVDTRIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHTVSGM 60
Query: 61 CESVEIEEA-GAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGR 119
CES++IEE G++ EEMD+HKL+LID TG +D++VA+DYVS++SLTL+LQD+A +SGR
Sbjct: 61 CESIDIEEELGSDFEEMDTHKLSLIDSQTGNIRDLEVAEDYVSMVSLTLKLQDEANKSGR 120
Query: 120 IGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAG 179
G+HA+S LASD T +L+ G S+PKSVAYGYTASGYGFVQDMPYA+I EFTRTSMAG
Sbjct: 121 AGLHALSGLASDPTHEFLKQNGINSMPKSVAYGYTASGYGFVQDMPYAFIQEFTRTSMAG 180
Query: 180 KIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKII 239
KIRRFK GY S+W++LSK LP EV C+++VL ++R+S V +K++NGE +V+EFDKII
Sbjct: 181 KIRRFKHGYMSMWERLSKSLPFEVFCDTQVLNVKRNSCGANVTIKNNNGEKQVLEFDKII 240
Query: 240 ISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLP 299
+SGA KN K YRS S T+ E++V++++ LE+ELFSKVQTIDYYTTV+KI G EH+P
Sbjct: 241 LSGAVAFKNSKTYRS--SSLTDGESEVVELNNLERELFSKVQTIDYYTTVVKINGFEHIP 298
Query: 300 VGFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMG 359
GFYYFGE+M+DP TIGHPVAMQ+FFADT+IFLFWSYGNS DI G V + V +MG
Sbjct: 299 KGFYYFGEFMEDPTTIGHPVAMQRFFADTNIFLFWSYGNSADIKGSFVAKCVTDVVSSMG 358
Query: 360 GVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYS 419
G ++ V+LQRRFKYFPHV+SKDMKDGFY+RLE +LQG +NTYYVGGL+AFELTERN+SYS
Sbjct: 359 GNVQKVILQRRFKYFPHVSSKDMKDGFYERLESQLQGFQNTYYVGGLLAFELTERNASYS 418
Query: 420 MALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGYLKHWG 479
+ +CKHFA + PYVK LFPL + ++L EL GVEFP+L SLDGYL++WG
Sbjct: 419 IMAVCKHFAIDGEGELTPYVKRLFPLSHNRNPSPPRDLGELEGVEFPDLPSLDGYLQYWG 478
Query: 480 THRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP 539
TH++T+K ++TWINEEG +N+ TY+EL NAS IA KLLTS KPVIKPGDRVLL+++P
Sbjct: 479 THKVTEKNVIYTWINEEGKLMNRRTYQELHGNASYIAQKLLTSTKPVIKPGDRVLLIHLP 538
Query: 540 GLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR 599
GL+F+DAFFGC+RA V+PVPVLPPDP+Q GGQALLK+ENISK C AVAILST YH+AVR
Sbjct: 539 GLEFIDAFFGCIRAGVIPVPVLPPDPMQSGGQALLKVENISKMCNAVAILSTSSYHAAVR 598
Query: 600 VG-----------------SWPNLPWLHTDSWVKN---SKNLLAENVVCFTESQPDDLCF 639
G WP++PW+HTDSW+KN S + + V FT+ QP DLCF
Sbjct: 599 AGYIKNIVTLAKRVQKCSAQWPDIPWIHTDSWIKNYRRSSDSFNSDTVLFTKPQPSDLCF 658
Query: 640 LQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699
LQFTSGSTGDAKGVMITH GLIHNVK M+KRY+STSKTVLVSWLPQYHDMGLIGGLFTA+
Sbjct: 659 LQFTSGSTGDAKGVMITHEGLIHNVKTMKKRYRSTSKTVLVSWLPQYHDMGLIGGLFTAL 718
Query: 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759
V G T++LFSP+ FI+NPLLWL+T++ Y THSAGPNFAFEL++RRLE+ K+KV +DLS
Sbjct: 719 VSGGTSVLFSPMIFIRNPLLWLQTINDYHGTHSAGPNFAFELVIRRLEAEKNKV--YDLS 776
Query: 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILD 819
SM FLM+AAEPVRQ TV+RF+ELT+PFGLS+GV+APGYGLAENCV+V+CA+G+ KP+ +D
Sbjct: 777 SMVFLMIAAEPVRQKTVRRFIELTQPFGLSEGVLAPGYGLAENCVYVTCAFGECKPVFID 836
Query: 820 WQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQIT 879
WQGRVCCGYV+Q+D D IRIV+P++ E E G EGE+WISSPS+G+GYWG E+SQ T
Sbjct: 837 WQGRVCCGYVEQDDTDTLIRIVDPDSLTEHQEDGVEGEIWISSPSSGVGYWGNSEMSQRT 896
Query: 880 FRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939
F N+L+N+ +K+TRTGDLGR IDG FITGRIKDLIIVAGRN+YSADVEKTVESS+E +
Sbjct: 897 FFNQLKNHPNKKFTRTGDLGRTIDGNLFITGRIKDLIIVAGRNIYSADVEKTVESSSEVL 956
Query: 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHG 999
RPGCCAV+G+PEEVL+ KGIS+ D SDQVGLVVIAEVR+GK V K+V+ NIK RVVEEHG
Sbjct: 957 RPGCCAVVGIPEEVLAQKGISIPDSSDQVGLVVIAEVREGKAVSKEVVNNIKARVVEEHG 1016
Query: 1000 VTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRK-LTRSFTTGTCK 1058
V VASVKLIKPRT+ KTTSGKI+RFEC++QFVD TL+ +K+K L RS TTGT
Sbjct: 1017 VAVASVKLIKPRTICKTTSGKIRRFECMRQFVDNTLSLAKGNHVSKKKGLFRSLTTGTGM 1076
Query: 1059 EG-RTPRPQLVSSPVA----SKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGID 1113
E R+ Q V ++ S+ ++ +I EFL +VSE TGI K+S TDSL SYG D
Sbjct: 1077 ESKRSLLRQTVDLTISHWPKSQVKNSNEITEFLTQIVSEHTGISKDKISLTDSLPSYGFD 1136
Query: 1114 SIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQL 1161
SI VVRAAQKLSDFLGVPVGA+DIFTA+CI++LASF ENLV KSQ QL
Sbjct: 1137 SIAVVRAAQKLSDFLGVPVGAIDIFTASCISELASFLENLVHKSQTQL 1184
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297723229|ref|NP_001173978.1| Os04g0473900 [Oryza sativa Japonica Group] gi|255675547|dbj|BAH92706.1| Os04g0473900 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1660 bits (4298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1188 (67%), Positives = 966/1188 (81%), Gaps = 31/1188 (2%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MDP +SIDDQF KLHP LPV+TRIGIVG GPSGLS AYALAKLGYRNVTL EK HTV GM
Sbjct: 80 MDPKRSIDDQFSKLHPSLPVDTRIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHTVSGM 139
Query: 61 CESVEIEEA-GAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGR 119
CES++IEE G++ EEMD+HKL+LID TG +D++VA+DYVS++SLTL+LQD+A +SGR
Sbjct: 140 CESIDIEEELGSDFEEMDTHKLSLIDSQTGNIRDLEVAEDYVSMVSLTLKLQDEANKSGR 199
Query: 120 IGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAG 179
G+HA+S LASD T +L+ G S+PKSVAYGYTASGYGFVQDMPYA+I EFTRTSMAG
Sbjct: 200 AGLHALSGLASDPTHEFLKQNGINSMPKSVAYGYTASGYGFVQDMPYAFIQEFTRTSMAG 259
Query: 180 KIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKII 239
KIRRFK GY S+W++LSK LP EV C+++VL ++R+S V +K++NGE +V+EFDKII
Sbjct: 260 KIRRFKHGYMSMWERLSKSLPFEVFCDTQVLNVKRNSCGANVTIKNNNGEKQVLEFDKII 319
Query: 240 ISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLP 299
+SGA KN K YRS S T+ E++V++++ LE+ELFSKVQTIDYYTTV+KI G EH+P
Sbjct: 320 LSGAVAFKNSKTYRS--SSLTDGESEVVELNNLERELFSKVQTIDYYTTVVKINGFEHIP 377
Query: 300 VGFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMG 359
GFYYFGE+M+DP TIGHPVAMQ+FFADT+IFLFWSYGNS DI G V + V +MG
Sbjct: 378 KGFYYFGEFMEDPTTIGHPVAMQRFFADTNIFLFWSYGNSADIKGSFVAKCVTDVVSSMG 437
Query: 360 GVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYS 419
G ++ V+LQRRFKYFPHV+SKDMKDGFY+RLE +LQG +NTYYVGGL+AFELTERN+SYS
Sbjct: 438 GNVQKVILQRRFKYFPHVSSKDMKDGFYERLESQLQGFQNTYYVGGLLAFELTERNASYS 497
Query: 420 MALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGYLKHWG 479
+ +CKHFA + PYVK LFPL + ++L EL GVEFP+L SLDGYL++WG
Sbjct: 498 IMAVCKHFAIDGEGELTPYVKRLFPLSHNRNPSPPRDLGELEGVEFPDLPSLDGYLQYWG 557
Query: 480 THRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP 539
TH++T+K ++TWINEEG +N+ TY+EL NAS IA KLLTS KPVIKPGDRVLL+++P
Sbjct: 558 THKVTEKNVIYTWINEEGKLMNRRTYQELHGNASYIAQKLLTSTKPVIKPGDRVLLIHLP 617
Query: 540 GLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR 599
GL+F+DAFFGC+RA V+PVPVLPPDP+Q GGQALLK+ENISK C AVAILST YH+AVR
Sbjct: 618 GLEFIDAFFGCIRAGVIPVPVLPPDPMQSGGQALLKVENISKMCNAVAILSTSSYHAAVR 677
Query: 600 VG-----------------SWPNLPWLHTDSWVKN---SKNLLAENVVCFTESQPDDLCF 639
G WP++PW+HTDSW+KN S + + V FT+ QP DLCF
Sbjct: 678 AGYIKNIVTLAKRVQKCSAQWPDIPWIHTDSWIKNYRRSSDSFNSDTVLFTKPQPSDLCF 737
Query: 640 LQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699
LQFTSGSTGDAKGVMITH GLIHNVK M+KRY+STSKTVLVSWLPQYHDMGLIGGLFTA+
Sbjct: 738 LQFTSGSTGDAKGVMITHEGLIHNVKTMKKRYRSTSKTVLVSWLPQYHDMGLIGGLFTAL 797
Query: 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759
V G T++LFSP+ FI+NPLLWL+T++ Y THSAGPNFAFEL++RRLE+ K+KV +DLS
Sbjct: 798 VSGGTSVLFSPMIFIRNPLLWLQTINDYHGTHSAGPNFAFELVIRRLEAEKNKV--YDLS 855
Query: 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILD 819
SM FLM+AAEPVRQ TV+RF+ELT+PFGLS+GV+APGYGLAENCV+V+CA+G+ KP+ +D
Sbjct: 856 SMVFLMIAAEPVRQKTVRRFIELTQPFGLSEGVLAPGYGLAENCVYVTCAFGECKPVFID 915
Query: 820 WQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQIT 879
WQGRVCCGYV+Q+D D IRIV+P++ E E G EGE+WISSPS+G+GYWG E+SQ T
Sbjct: 916 WQGRVCCGYVEQDDTDTLIRIVDPDSLTEHQEDGVEGEIWISSPSSGVGYWGNSEMSQRT 975
Query: 880 FRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939
F N+L+N+ +K+TRTGDLGR IDG FITGRIKDLIIVAGRN+YSADVEKTVESS+E +
Sbjct: 976 FFNQLKNHPNKKFTRTGDLGRTIDGNLFITGRIKDLIIVAGRNIYSADVEKTVESSSEVL 1035
Query: 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHG 999
RPGCCAV+G+PEEVL+ KGIS+ D SDQVGLVVIAEVR+GK V K+V+ NIK RVVEEHG
Sbjct: 1036 RPGCCAVVGIPEEVLAQKGISIPDSSDQVGLVVIAEVREGKAVSKEVVNNIKARVVEEHG 1095
Query: 1000 VTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRK-LTRSFTTGTCK 1058
V VASVKLIKPRT+ KTTSGKI+RFEC++QFVD TL+ +K+K L RS TTGT
Sbjct: 1096 VAVASVKLIKPRTICKTTSGKIRRFECMRQFVDNTLSLAKGNHVSKKKGLFRSLTTGTGM 1155
Query: 1059 EG-RTPRPQLVSSPVA----SKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGID 1113
E R+ Q V ++ S+ ++ +I EFL +VSE TGI K+S TDSL SYG D
Sbjct: 1156 ESKRSLLRQTVDLTISHWPKSQVKNSNEITEFLTQIVSEHTGISKDKISLTDSLPSYGFD 1215
Query: 1114 SIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQL 1161
SI VVRAAQKLSDFLGVPVGA+DIFTA+CI++LASF ENLV KSQ QL
Sbjct: 1216 SIAVVRAAQKLSDFLGVPVGAIDIFTASCISELASFLENLVHKSQTQL 1263
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116309764|emb|CAH66806.1| OSIGBa0135C13.1 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1659 bits (4295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/1188 (67%), Positives = 966/1188 (81%), Gaps = 31/1188 (2%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MDP +SIDDQF KLHP LPV+TRIGIVG GPSGLS AYALAKLGYRNVTL EK HTV GM
Sbjct: 1 MDPKRSIDDQFSKLHPSLPVDTRIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHTVSGM 60
Query: 61 CESVEIEEA-GAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGR 119
CES++IEE G++ EEMD+HKL+LID TG +D++VA+DYVS++SLTL+LQD+A +SGR
Sbjct: 61 CESIDIEEELGSDFEEMDTHKLSLIDSQTGNIRDLEVAEDYVSMVSLTLKLQDEANKSGR 120
Query: 120 IGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAG 179
G+HA+S LASD T +L+ G S+PKSVAYGYTASGYGFVQDMPYA+I EFTRTSMAG
Sbjct: 121 AGLHALSGLASDPTHEFLKQNGINSMPKSVAYGYTASGYGFVQDMPYAFIQEFTRTSMAG 180
Query: 180 KIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKII 239
KIRRFK GY S+W++LSK LP EV C+++VL ++R+S V +K++NGE +V+EFDKII
Sbjct: 181 KIRRFKHGYMSMWERLSKSLPFEVFCDTQVLNVKRNSCGANVTIKNNNGEKQVLEFDKII 240
Query: 240 ISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLP 299
+SGA KN K YRS S T+ E++V++++ LE+ELFSKVQTIDYYTTV+KI G EH+P
Sbjct: 241 LSGAVAFKNSKTYRS--SSLTDGESEVVELNNLERELFSKVQTIDYYTTVVKINGFEHIP 298
Query: 300 VGFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMG 359
GFYYF E+M+DP TIGHPVAMQ+FFADT+IFLFWSYGNS DI G V + V +MG
Sbjct: 299 KGFYYFEEFMEDPTTIGHPVAMQRFFADTNIFLFWSYGNSADIKGSFVAKCVTDVVSSMG 358
Query: 360 GVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYS 419
G ++ V+LQRRFKYFPHV+SKDMKDGFY+RLE +LQG +NTYYVGGL+AFELTERN+SYS
Sbjct: 359 GNVQKVILQRRFKYFPHVSSKDMKDGFYERLESQLQGFQNTYYVGGLLAFELTERNASYS 418
Query: 420 MALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGYLKHWG 479
+ +CKHFA + PYVK LFPL + ++L EL GVEFP+L SLDGYL++WG
Sbjct: 419 IMAVCKHFAIDGEGELTPYVKRLFPLSHNRNPSPPRDLGELEGVEFPDLPSLDGYLQYWG 478
Query: 480 THRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP 539
TH++T+K ++TWINEEG +N+ TY+EL NAS IA KLLTS KPVIKPGDRVLL+++P
Sbjct: 479 THKVTEKNVIYTWINEEGKLMNRRTYQELHGNASYIAQKLLTSTKPVIKPGDRVLLIHLP 538
Query: 540 GLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR 599
GL+F+DAFFGC+RA V+PVPVLPPDP+Q GGQALLK+ENISK C AVAILST YH+AVR
Sbjct: 539 GLEFIDAFFGCIRAGVIPVPVLPPDPMQSGGQALLKVENISKMCNAVAILSTSSYHAAVR 598
Query: 600 VG-----------------SWPNLPWLHTDSWVKN---SKNLLAENVVCFTESQPDDLCF 639
G WP++PW+ TDSW+KN S + + V FT+ QP DLCF
Sbjct: 599 AGYIKNIVTLAKRVQKCSAQWPDIPWIQTDSWIKNYRRSSDSFNSDTVLFTKPQPSDLCF 658
Query: 640 LQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699
LQFTSGSTGDAKGVMITH GLIHNVK M+KRY+STSKTVLVSWLPQYHDMGLIGGLFTA+
Sbjct: 659 LQFTSGSTGDAKGVMITHEGLIHNVKTMKKRYRSTSKTVLVSWLPQYHDMGLIGGLFTAL 718
Query: 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759
V G T++LFSP+TFI+NPLLWL+T++ Y THSAGPNFAFEL++RRLE+ K+KV +DLS
Sbjct: 719 VSGGTSVLFSPMTFIRNPLLWLQTINDYHGTHSAGPNFAFELVIRRLEAEKNKV--YDLS 776
Query: 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILD 819
SM FLM+AAEPVRQ TV+RF+ELT+PFGLS+GV+APGYGLAENCV+V+CA+G+ KP+ +D
Sbjct: 777 SMVFLMIAAEPVRQKTVRRFIELTQPFGLSEGVLAPGYGLAENCVYVTCAFGECKPVFID 836
Query: 820 WQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQIT 879
WQGRVCCGYV+Q+D D IRIV+P++ E E G EGE+WISSPS+G+GYWG E+SQ T
Sbjct: 837 WQGRVCCGYVEQDDTDTLIRIVDPDSLTEHQEDGVEGEIWISSPSSGVGYWGNSEMSQRT 896
Query: 880 FRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939
F N+L+N+ +K+TRTGDLGR IDG FITGRIKDLIIVAGRN+YSADVEKTVESS+E +
Sbjct: 897 FFNQLKNHPNKKFTRTGDLGRTIDGNLFITGRIKDLIIVAGRNIYSADVEKTVESSSEVL 956
Query: 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHG 999
RPGCCAV+G+PEEVL+ KGIS+ D SDQVGLVVIAEVR+GK V ++V+ NIK RVVEEHG
Sbjct: 957 RPGCCAVVGIPEEVLAQKGISIPDSSDQVGLVVIAEVREGKAVSEEVVNNIKARVVEEHG 1016
Query: 1000 VTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRK-LTRSFTTGTCK 1058
V VASVKLIKPRT+ KTTSGKI+RFEC++QFVD TL+ +K+K L RS TTGT
Sbjct: 1017 VAVASVKLIKPRTICKTTSGKIRRFECMRQFVDNTLSLAKGNHVSKKKGLFRSLTTGTGM 1076
Query: 1059 EG-RTPRPQLVSSPVA----SKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGID 1113
E R+ Q V ++ S+ ++ +I EFL +VSE TGI K+S TDSL SYG D
Sbjct: 1077 ESKRSLLRQTVDLTISHWPKSQVKNSNEITEFLTQIVSEHTGISKDKISLTDSLPSYGFD 1136
Query: 1114 SIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQL 1161
SI VVRAAQKLSDFLGVPVGA+DIFTA+CI++LASF ENLV KSQPQL
Sbjct: 1137 SIAVVRAAQKLSDFLGVPVGAIDIFTASCISELASFLENLVHKSQPQL 1184
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218195035|gb|EEC77462.1| hypothetical protein OsI_16281 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1650 bits (4274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1211 (65%), Positives = 967/1211 (79%), Gaps = 54/1211 (4%)
Query: 1 MDPGKSIDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
MDP +SIDDQF KLHP LPV+TRIGIVG GPSGLS AYALAKLGYRNVTL EK HTV GM
Sbjct: 1 MDPKRSIDDQFSKLHPSLPVDTRIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHTVSGM 60
Query: 61 CESVEIE------------------------EAGAELEEMDSHKLALIDGSTGEFQDIKV 96
CES++IE E G++ EEMD+HKL+LID TG +D++V
Sbjct: 61 CESIDIEGRIYDLGGQVIAANSAPVITHLAEELGSDFEEMDTHKLSLIDSQTGNIRDLEV 120
Query: 97 ADDYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTAS 156
A+DYVS++SLTL+LQD+A +SGR G+HA+S LASD T +L+ G S+PKSVAYGYTAS
Sbjct: 121 AEDYVSMVSLTLKLQDEANKSGRAGLHALSGLASDPTHEFLKQNGINSMPKSVAYGYTAS 180
Query: 157 GYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDS 216
GYGFVQDMPYA+I EFTRTSMAGKIRRFK GY S+W++LSK LP EV C+++VL ++R+S
Sbjct: 181 GYGFVQDMPYAFIQEFTRTSMAGKIRRFKHGYMSMWERLSKSLPFEVFCDTQVLNVKRNS 240
Query: 217 TTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKEL 276
V +K++NGE +V+EFDKII+SGA KN K YRS S T+ E++V++++ LE+EL
Sbjct: 241 CGANVTIKNNNGEKQVLEFDKIILSGAVAFKNSKTYRS--SSLTDGESEVVELNNLEREL 298
Query: 277 FSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSY 336
FSKVQTIDYYTTV+KI G EH+P GFYYF E+M+DP TIGHPVAMQ+FFADT+IFLFWSY
Sbjct: 299 FSKVQTIDYYTTVVKINGFEHIPKGFYYFEEFMEDPTTIGHPVAMQRFFADTNIFLFWSY 358
Query: 337 GNSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQG 396
GNS DI G V + V +MGG ++ V+LQRRFKYFPHV+SKDMKDGFY+RLE +LQG
Sbjct: 359 GNSADIKGSFVAKCVTDVVSSMGGNVQKVILQRRFKYFPHVSSKDMKDGFYERLESQLQG 418
Query: 397 QRNTYYVGGLMAFELTERNSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKE 456
+NTYYVGGL+AFELTERN+SYS+ +CKHFA + PYVK LFPL + ++
Sbjct: 419 FQNTYYVGGLLAFELTERNASYSIMAVCKHFAIDGEGELTPYVKRLFPLSHNRNPSPPRD 478
Query: 457 LEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIA 516
L EL GVEFP+L SLDGYL++WGTH++T+K ++TWINEEG +N+ TY+EL NAS IA
Sbjct: 479 LGELEGVEFPDLPSLDGYLQYWGTHKVTEKNVIYTWINEEGKLMNRRTYQELHGNASYIA 538
Query: 517 HKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKI 576
KLLTS KPVIKPGDRVLL+++PGL+F+DAFFGC+RA V+PVPVLPPDP+Q GGQALLK+
Sbjct: 539 QKLLTSTKPVIKPGDRVLLIHLPGLEFIDAFFGCIRAGVIPVPVLPPDPMQSGGQALLKV 598
Query: 577 ENISKSCGAVAILSTIGYHSAVRVG-----------------SWPNLPWLHTDSWVKN-- 617
ENISK C AVAILST YH+AVR G WP++PW+HTDSW+KN
Sbjct: 599 ENISKMCNAVAILSTSSYHAAVRAGYIKNIVTLAKRVQKCSAQWPDIPWIHTDSWIKNYR 658
Query: 618 -SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK 676
S + + V FT+ QP DLCFLQFTSGSTGDAKGVMITH GLIHNVK M+KRY+STSK
Sbjct: 659 RSSDSFNSDTVLFTKPQPSDLCFLQFTSGSTGDAKGVMITHEGLIHNVKTMKKRYRSTSK 718
Query: 677 TVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
TVLVSWLPQYHDMGLIGGLFTA+V G T++LFSP+TFI+NPLLWL+T++ Y THSAGPN
Sbjct: 719 TVLVSWLPQYHDMGLIGGLFTALVSGGTSVLFSPMTFIRNPLLWLQTINDYHGTHSAGPN 778
Query: 737 FAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPG 796
FAFEL++RRLE+ K+KV +DLSSM FLM+AAEPVRQ TV+RF+ELT+PFGLS+GV+APG
Sbjct: 779 FAFELVIRRLEAEKNKV--YDLSSMVFLMIAAEPVRQKTVRRFIELTQPFGLSEGVLAPG 836
Query: 797 YGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEG 856
YGLAENCV+V+CA+G+ KP+ +DWQGRVCCGYV+Q+D D IRIV+P++ E E G EG
Sbjct: 837 YGLAENCVYVTCAFGECKPVFIDWQGRVCCGYVEQDDTDTLIRIVDPDSLTEHQEDGVEG 896
Query: 857 EVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLI 916
E+WISSPS+G+GYWG E+SQ TF N+L+N+ +K+TRTGDLGR IDG FITGRIKDLI
Sbjct: 897 EIWISSPSSGVGYWGNSEMSQRTFFNQLKNHPNKKFTRTGDLGRTIDGNLFITGRIKDLI 956
Query: 917 IVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV 976
IVAGRN+YSADVEKTVESS+E +RPGCCAV+G+PEEVL+ KGIS+ D SDQVGLVVIAEV
Sbjct: 957 IVAGRNIYSADVEKTVESSSEVLRPGCCAVVGIPEEVLAQKGISIPDSSDQVGLVVIAEV 1016
Query: 977 RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLN 1036
R+GK V ++V+ NIK RVVEEHGV VASVKLIKPRT+ KTTSGKI+RFEC++QFVD TL+
Sbjct: 1017 REGKAVSEEVVNNIKARVVEEHGVAVASVKLIKPRTICKTTSGKIRRFECMRQFVDNTLS 1076
Query: 1037 TVPEPLFTKRK-LTRSFTTGTCKEG-RTPRPQLVSSPVA----SKKMSNKDIVEFLKGLV 1090
+K+K L RS TTGT E R+ Q V ++ S+ ++ +I EFL +V
Sbjct: 1077 LAKGNHVSKKKGLFRSLTTGTGMESKRSLLRQTVDLTISHWPKSQVKNSNEITEFLTQIV 1136
Query: 1091 SEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFS 1150
SE TGI K+S TDSL SYG DSI VVRAAQKLSDFLGVPVGA+DIFTA+CI++LASF
Sbjct: 1137 SEHTGISKDKISLTDSLPSYGFDSIAVVRAAQKLSDFLGVPVGAIDIFTASCISELASFL 1196
Query: 1151 ENLVMKSQPQL 1161
ENLV KSQPQL
Sbjct: 1197 ENLVHKSQPQL 1207
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2280 | ||||||
| UNIPROTKB|P95141 | 619 | fadD29 "Long-chain-fatty-acid- | 0.170 | 0.626 | 0.348 | 2.5e-57 | |
| UNIPROTKB|Q7TXK5 | 619 | fadD29 "Long-chain-fatty-acid- | 0.170 | 0.626 | 0.348 | 2.5e-57 | |
| UNIPROTKB|Q4K902 | 4342 | pvdL "Non-ribosomal peptide sy | 0.221 | 0.116 | 0.34 | 6e-56 | |
| UNIPROTKB|P96290 | 580 | fadD28 "Long-chain-fatty-acid- | 0.230 | 0.905 | 0.312 | 2e-55 | |
| UNIPROTKB|O07797 | 584 | fadD23 "Probable long-chain-fa | 0.223 | 0.873 | 0.307 | 1.4e-54 | |
| UNIPROTKB|Q7TVK7 | 584 | fadD23 "Probable long-chain-fa | 0.223 | 0.873 | 0.307 | 1.4e-54 | |
| UNIPROTKB|Q48KD6 | 4336 | PSPPH_1911 "Pyoverdine chromop | 0.229 | 0.120 | 0.322 | 9.4e-54 | |
| UNIPROTKB|P63523 | 578 | fadD21 "Putative fatty-acid--C | 0.226 | 0.892 | 0.295 | 1.2e-52 | |
| TIGR_CMR|CBU_0324 | 548 | CBU_0324 "AMP-binding enzyme f | 0.191 | 0.797 | 0.313 | 1e-51 | |
| UNIPROTKB|Q50586 | 583 | fadD25 "Putative fatty-acid--C | 0.232 | 0.910 | 0.290 | 5.8e-51 |
| UNIPROTKB|P95141 fadD29 "Long-chain-fatty-acid--AMP ligase FadD29" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 148/425 (34%), Positives = 227/425 (53%)
Query: 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN-VKLMRKRYKSTSK--TVLVSWLPQY 686
T + +LQ+TSGST GV+++H +I N V+LM + K + VSWLP Y
Sbjct: 198 TRFERPSTAYLQYTSGSTRAPAGVVLSHKNVITNCVQLMSDYIGDSEKVPSTPVSWLPFY 257
Query: 687 HDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRL 746
HDMGL+ G+ M+ TA+L SP+ F++ P W++ ++K+RA S+ PNF FEL VRR
Sbjct: 258 HDMGLMLGIILPMINQDTAVLMSPMAFLQRPARWMQLLAKHRAQISSAPNFGFELAVRR- 316
Query: 747 ESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFV 806
+S D + DL ++ ++ AE V T++RF E PF LS+ + P YGLAE V+V
Sbjct: 317 -TSDDDMAGLDLGHVRTIVTGAERVNVATLRRFTERFAPFNLSETAIRPSYGLAEATVYV 375
Query: 807 SCAYGQG---KPIILDWQ------------GRVCCGYVDQNDPDVD-IRIVNPETSEEIG 850
+ A G G K + D+Q G V P +RIV+PET E
Sbjct: 376 ATA-GPGRAPKSVCFDYQQLSVGQAKRAENGSEGANLVSYGAPRASTVRIVDPETRME-N 433
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQN-NRGRK---YTRTGDLGRIIDGKF 906
G GE+W+ + G+GYW + ++ TFR L + G + RTGDLG I +G+
Sbjct: 434 PAGTVGEIWVQGDNVGLGYWRNPQQTEATFRARLVTPSPGTSEGPWLRTGDLGVIFEGEL 493
Query: 907 FITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSD 966
FITGRIK+L++V G N Y D+E T++ T G I VP++ + K +++ +
Sbjct: 494 FITGRIKELLVVDGANHYPEDIEATIQEITG----GRVVAIAVPDD-RTEKLVTIIELMK 548
Query: 967 QVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFEC 1026
+ G E + V ++V I H + VA V ++ P ++ TTSGK++R
Sbjct: 549 R-GRTDEEEKNRLRTVKREVASAIS----RSHRLRVADVVMVAPGSIPVTTSGKVRRSAS 603
Query: 1027 LKQFV 1031
+++++
Sbjct: 604 VERYL 608
|
|
| UNIPROTKB|Q7TXK5 fadD29 "Long-chain-fatty-acid--AMP ligase FadD29" [Mycobacterium bovis AF2122/97 (taxid:233413)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 148/425 (34%), Positives = 227/425 (53%)
Query: 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN-VKLMRKRYKSTSK--TVLVSWLPQY 686
T + +LQ+TSGST GV+++H +I N V+LM + K + VSWLP Y
Sbjct: 198 TRFERPSTAYLQYTSGSTRAPAGVVLSHKNVITNCVQLMSDYIGDSEKVPSTPVSWLPFY 257
Query: 687 HDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRL 746
HDMGL+ G+ M+ TA+L SP+ F++ P W++ ++K+RA S+ PNF FEL VRR
Sbjct: 258 HDMGLMLGIILPMINQDTAVLMSPMAFLQRPARWMQLLAKHRAQISSAPNFGFELAVRR- 316
Query: 747 ESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFV 806
+S D + DL ++ ++ AE V T++RF E PF LS+ + P YGLAE V+V
Sbjct: 317 -TSDDDMAGLDLGHVRTIVTGAERVNVATLRRFTERFAPFNLSETAIRPSYGLAEATVYV 375
Query: 807 SCAYGQG---KPIILDWQ------------GRVCCGYVDQNDPDVD-IRIVNPETSEEIG 850
+ A G G K + D+Q G V P +RIV+PET E
Sbjct: 376 ATA-GPGRAPKSVCFDYQQLSVGQAKRTENGSEGANLVSYGAPRASTVRIVDPETRME-N 433
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQN-NRGRK---YTRTGDLGRIIDGKF 906
G GE+W+ + G+GYW + ++ TFR L + G + RTGDLG I +G+
Sbjct: 434 PAGTVGEIWVQGDNVGLGYWRNPQQTEATFRARLVTPSPGTSEGPWLRTGDLGVIFEGEL 493
Query: 907 FITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSD 966
FITGRIK+L++V G N Y D+E T++ T G I VP++ + K +++ +
Sbjct: 494 FITGRIKELLVVDGANHYPEDIEATIQEITG----GRVVAIAVPDD-RTEKLVTIIELMK 548
Query: 967 QVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFEC 1026
+ G E + V ++V I H + VA V ++ P ++ TTSGK++R
Sbjct: 549 R-GRTDEEEKNRLRTVKREVASAIS----RSHRLRVADVVMVAPGSIPVTTSGKVRRSAS 603
Query: 1027 LKQFV 1031
+++++
Sbjct: 604 VERYL 608
|
|
| UNIPROTKB|Q4K902 pvdL "Non-ribosomal peptide synthetase PvdL" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 6.0e-56, Sum P(3) = 6.0e-56
Identities = 187/550 (34%), Positives = 279/550 (50%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXXXXX 563
+Y +LD A IA L + + GDR +L++ G D+V AFFGC+ A
Sbjct: 42 SYLDLDLRARTIAAALQANAEF----GDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPP 97
Query: 564 XXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
+R Q ++ +I +L++ G ++ P V + LA
Sbjct: 98 ESTRRHHQE--RLISIMADAEPRLLLTSAGLRDSLLQMDELKAPGAPQLLCVDTLQAGLA 155
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY--KSTSKTVLVS 681
E+ Q DD+ FLQ+TSGST KGV ++HG L+ N L+R+ + V+VS
Sbjct: 156 EDWQAVA-LQGDDIAFLQYTSGSTALPKGVQVSHGNLVANELLIRRGFGIDLNPDDVIVS 214
Query: 682 WLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFEL 741
WLP YHDMGLIGGL + G +L SP F+ P+ WLE +S+Y T S GP+FA+ L
Sbjct: 215 WLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLARPVRWLEAISEYGGTISGGPDFAYRL 274
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801
R+ S+ + DLS + +EP+R T++RF E G S YGLAE
Sbjct: 275 CSERV--SESALERLDLSGWRVAYSGSEPIRLDTLERFAEKFSACGFSHENFLASYGLAE 332
Query: 802 NCVFVSCAY-GQGKPII-LDWQ---------GR----VCCGYVDQNDPDVDIRIVNPETS 846
+FV+ GQG P + LD Q G+ + CG+ + P+ + +++P+
Sbjct: 333 ATLFVAGGVRGQGIPALHLDDQALAQNRAEPGQGSAMMSCGF---SQPEHAVLVMDPQQL 389
Query: 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKF 906
E+ + + GEVW + PS GYW E + TF +Q+ GR + RTGDLG I DG+
Sbjct: 390 GELPD-NRIGEVWAAGPSIAHGYWRNPEATAKTF---VQH-AGRTWLRTGDLGFIRDGEL 444
Query: 907 FITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSD 966
FITGR+KDL+IV G N+Y D+EKT+E E +R G A V E+ +GI ++
Sbjct: 445 FITGRLKDLLIVRGHNLYPQDIEKTIEREVEVVRKGRVAAFAVTEQ--GQEGIGIA---- 498
Query: 967 QVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFEC 1026
+ V+ P + +I+ I+ V E + V L+ P + KT+SGK++R C
Sbjct: 499 ---AEISRSVQKILPPEA-LIKAIRQAVAEACQEAPSVVVLLNPGALPKTSSGKLQRSAC 554
Query: 1027 LKQFVDGTLN 1036
+ DG+L+
Sbjct: 555 RTRLADGSLD 564
|
|
| UNIPROTKB|P96290 fadD28 "Long-chain-fatty-acid--AMP ligase FadD28" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 2.0e-55, P = 2.0e-55
Identities = 181/580 (31%), Positives = 288/580 (49%)
Query: 482 RITQKKTLFTWINEE----GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVY 537
R+ FT+++ E GVA+ T+ +L +A +L SR GDRV++
Sbjct: 15 RLQPHDPAFTFMDYEQDWDGVAITL-TWSQLYRRTLNVAQEL--SRCG--STGDRVVISA 69
Query: 538 VPGLDFVDAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSA 597
GL++V AF G ++A +GG + +++ VAIL+T
Sbjct: 70 PQGLEYVVAFLGALQA----GRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDD 125
Query: 598 VRVGSWPNLPWLHTDSWVK-NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMIT 656
V V P S ++ + +L A N F E + +LQ+TSGST GV+++
Sbjct: 126 V-VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMS 184
Query: 657 HGGLIHNVK-LMRKRYKSTS-----KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSP 710
H + N + LM + T + LVSWLP YHDMGL+ G+ ++GG A+L SP
Sbjct: 185 HQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSP 244
Query: 711 LTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770
++F++ P W+ M+ SA PNFAFEL RR ++ D + DL ++ ++ +E
Sbjct: 245 VSFLQRPARWMHLMASDFHAFSAAPNFAFELAARR--TTDDDMAGRDLGNILTILSGSER 302
Query: 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQ--------G 822
V+ T+KRF + F L + V+ P YGLAE V+V+ + P +D+
Sbjct: 303 VQAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHA 362
Query: 823 RVCCG--------YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREE 874
+ C G Y+ P V RIV+ +T E + G GE+W+ + GYW + +
Sbjct: 363 KPCAGGGATSLISYMLPRSPIV--RIVDSDTCIECPD-GTVGEIWVHGDNVANGYWQKPD 419
Query: 875 LSQITFRNELQN-NRGRK---YTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEK 930
S+ TF ++ + G + RTGD G + DGK FI GRIKDL+IV GRN D+E
Sbjct: 420 ESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGRIKDLLIVYGRNHSPDDIEA 479
Query: 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENI 990
T++ T G CA I VP + + K +++ + + A R G + ++V +
Sbjct: 480 TIQEITR----GRCAAISVPGDRSTEKLVAIIELKKRGDSDQDAMARLGA-IKREVTSAL 534
Query: 991 KTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
+ HG++VA + L+ P ++ TTSGK++R C++Q+
Sbjct: 535 SS----SHGLSVADLVLVAPGSIPITTSGKVRRGACVEQY 570
|
|
| UNIPROTKB|O07797 fadD23 "Probable long-chain-fatty-acid--CoA ligase FadD23" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 1.4e-54, P = 1.4e-54
Identities = 178/579 (30%), Positives = 285/579 (49%)
Query: 488 TLFTWINEE--GVAVNQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544
T FT+I+ E +++S T+ ++ +A ++ R I GDR +++ GLD++
Sbjct: 21 TAFTYIDYERDSEGISESLTWSQVYRRTLNVAAEV--RRHAAI--GDRAVILAPQGLDYI 76
Query: 545 DAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAV--RVGS 602
AF G ++A GG + +++ + + +L+T V RV
Sbjct: 77 VAFLGALQA----GLIAVPLSAPLGGASDERVDAVVRDAKPNVVLTTSAIMGDVVPRVTP 132
Query: 603 WPNL---PWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGG 659
P + P + D +S + N+V + +LQ+TSGST GVMIT+
Sbjct: 133 PPGIASPPTVAVDQLDLDSP--IRSNIV---DDSLQTTAYLQYTSGSTRTPAGVMITYKN 187
Query: 660 LIHNVKLMRKRYKSTSKTV------LVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTF 713
++ N + M Y + + V ++SWLP YHDMGL+ G+ ++ G A+L SP+ F
Sbjct: 188 ILANFQQMISAYFADTGAVPPLDLFIMSWLPFYHDMGLVLGVCAPIIVGCGAVLTSPVAF 247
Query: 714 IKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773
++ P WL+ M++ SA PNFAFEL + + D + DL +K ++ +E V
Sbjct: 248 LQRPARWLQLMAREGQAFSAAPNFAFELTAAK--AIDDDLAGLDLGRIKTILCGSERVHP 305
Query: 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY-GQGKPI-------ILDWQGRVC 825
T+KRFV+ F L + + P YGLAE V+V+ + GQ I + Q + C
Sbjct: 306 ATLKRFVDRFSRFNLREFAIRPAYGLAEATVYVATSQAGQPPEIRYFEPHELSAGQAKPC 365
Query: 826 C-----GYVDQNDPDVDI-RIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQIT 879
V P I RIV+P T+ E PG GE+W+ + GYW + + ++ T
Sbjct: 366 ATGAGTALVSYPLPQSPIVRIVDPNTNTEC-PPGTIGEIWVHGDNVAGGYWEKPDETERT 424
Query: 880 FRNEL-QNNRGRK---YTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESS 935
F L + G + RTGD G + + KFFI GRIKDL+IV GRN D+E T++
Sbjct: 425 FGGALVAPSAGTPVGPWLRTGDSGFVSEDKFFIIGRIKDLLIVYGRNHSPDDIEATIQEI 484
Query: 936 TEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKD----VIENIK 991
T G CA I VP S+G ++ LV I E+ + +D + V +
Sbjct: 485 TR----GRCAAIAVP-----------SNGVEK--LVAIVELNNRGNLDTERLSFVTREVT 527
Query: 992 TRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
+ + HG++V+ + L+ P ++ TTSGK++R EC+K +
Sbjct: 528 SAISTSHGLSVSDLVLVAPGSIPITTSGKVRRAECVKLY 566
|
|
| UNIPROTKB|Q7TVK7 fadD23 "Probable long-chain-fatty-acid--CoA ligase FadD23" [Mycobacterium bovis AF2122/97 (taxid:233413)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 1.4e-54, P = 1.4e-54
Identities = 178/579 (30%), Positives = 285/579 (49%)
Query: 488 TLFTWINEE--GVAVNQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544
T FT+I+ E +++S T+ ++ +A ++ R I GDR +++ GLD++
Sbjct: 21 TAFTYIDYERDSEGISESLTWSQVYRRTLNVAAEV--RRHAAI--GDRAVILAPQGLDYI 76
Query: 545 DAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAV--RVGS 602
AF G ++A GG + +++ + + +L+T V RV
Sbjct: 77 VAFLGALQA----GLIAVPLSAPLGGASDERVDAVVRDAKPNVVLTTSAIMGDVVPRVTP 132
Query: 603 WPNL---PWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGG 659
P + P + D +S + N+V + +LQ+TSGST GVMIT+
Sbjct: 133 PPGIASPPTVAVDQLDLDSP--IRSNIV---DDSLQTTAYLQYTSGSTRTPAGVMITYKN 187
Query: 660 LIHNVKLMRKRYKSTSKTV------LVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTF 713
++ N + M Y + + V ++SWLP YHDMGL+ G+ ++ G A+L SP+ F
Sbjct: 188 ILANFQQMISAYFADTGAVPPLDLFIMSWLPFYHDMGLVLGVCAPIIVGCGAVLTSPVAF 247
Query: 714 IKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773
++ P WL+ M++ SA PNFAFEL + + D + DL +K ++ +E V
Sbjct: 248 LQRPARWLQLMAREGQAFSAAPNFAFELTAAK--AIDDDLAGLDLGRIKTILCGSERVHP 305
Query: 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY-GQGKPI-------ILDWQGRVC 825
T+KRFV+ F L + + P YGLAE V+V+ + GQ I + Q + C
Sbjct: 306 ATLKRFVDRFSRFNLREFAIRPAYGLAEATVYVATSQAGQPPEIRYFEPHELSAGQAKPC 365
Query: 826 C-----GYVDQNDPDVDI-RIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQIT 879
V P I RIV+P T+ E PG GE+W+ + GYW + + ++ T
Sbjct: 366 ATGAGTALVSYPLPQSPIVRIVDPNTNTEC-PPGTIGEIWVHGDNVAGGYWEKPDETERT 424
Query: 880 FRNEL-QNNRGRK---YTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESS 935
F L + G + RTGD G + + KFFI GRIKDL+IV GRN D+E T++
Sbjct: 425 FGGALVAPSAGTPVGPWLRTGDSGFVSEDKFFIIGRIKDLLIVYGRNHSPDDIEATIQEI 484
Query: 936 TEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKD----VIENIK 991
T G CA I VP S+G ++ LV I E+ + +D + V +
Sbjct: 485 TR----GRCAAIAVP-----------SNGVEK--LVAIVELNNRGNLDTERLSFVTREVT 527
Query: 992 TRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
+ + HG++V+ + L+ P ++ TTSGK++R EC+K +
Sbjct: 528 SAISTSHGLSVSDLVLVAPGSIPITTSGKVRRAECVKLY 566
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| UNIPROTKB|Q48KD6 PSPPH_1911 "Pyoverdine chromophore synthetase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 9.4e-54, Sum P(4) = 9.4e-54
Identities = 185/574 (32%), Positives = 282/574 (49%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXXXXX 563
TY +LD A IA L R+ V PGDR L++ G D+V AFFGC+ A
Sbjct: 41 TYRDLDLRARTIAAAL--QRQAV--PGDRATLLFHSGPDYVAAFFGCLYAGVIAVPAYPP 96
Query: 564 XXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWP--NLPWLHTDSWVKNSKNL 621
+R Q L + I+ + + + + + +++ + P L V +
Sbjct: 97 ESNRRHHQERL-LSIIADAEPRLVLTGSDLQPALLQMDELAAADAPQLLC---VDTLDSA 152
Query: 622 LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY--KSTSKTVL 679
A+N + Q DD+ FLQ+TSGST KGV ++HG L+ N L+R + V+
Sbjct: 153 SADNWQG-PQLQADDIAFLQYTSGSTALPKGVQVSHGNLVANELLIRHGFGIDVNPDDVI 211
Query: 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAF 739
VSWLP YHDMGLIGGL + G IL +P F+ PL WLE +S+Y T S GP+FA+
Sbjct: 212 VSWLPLYHDMGLIGGLLQPIFSGVPCILMAPAYFLTRPLRWLEAISEYGGTISGGPDFAY 271
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799
+L R+ S + DLS + +EP+R+ ++ F E G + YGL
Sbjct: 272 QLCSARVSDSA--LERLDLSRWRVAYSGSEPIREDSLNAFAEKFASCGFTPDSFMASYGL 329
Query: 800 AENCVFVSCAY-GQGKPIIL--------------DWQGRVCCGYVDQNDPDVDIRIVNPE 844
AE ++V+ G+G P + D Q + CG P + I +P
Sbjct: 330 AEATLYVAGGKRGKGIPSLRLNAQALARNVAELGDGQPVMSCG---TGQPGHGVLIADPA 386
Query: 845 TSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDG 904
T + + E + GEVW S PS GYW E + F +Q++ G+ + RTGDLG G
Sbjct: 387 TLQVLDE-NRIGEVWASGPSIAHGYWRNPEATAKAF---VQHD-GQTWLRTGDLGFQRHG 441
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVS-D 963
+ +ITGR+KD++IV G N+Y D+EK VE + +R G A V ++ ++GI ++ +
Sbjct: 442 ELYITGRLKDMLIVRGHNLYPQDIEKVVEREVDVVRKGRIAAFAVNQD--GSEGIGIAAE 499
Query: 964 GSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
S V ++ AE +I+ I+ V E + V L+ P + KT+SGK++R
Sbjct: 500 VSRSVQKILSAEA---------LIKIIRQAVAEAFQEAPSVVVLLNPGALPKTSSGKLQR 550
Query: 1024 FECLKQFVDGTLNTVPE-PLFTKRKLTRSFTTGT 1056
C + DG+L++ P R+ +TG+
Sbjct: 551 SACRTRLADGSLDSYAVFPANNTTHQNRTLSTGS 584
|
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| UNIPROTKB|P63523 fadD21 "Putative fatty-acid--CoA ligase fadD21" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 1.2e-52, P = 1.2e-52
Identities = 169/571 (29%), Positives = 280/571 (49%)
Query: 490 FTWIN--EEGVAVNQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546
FT+I+ ++ + ++ T+ E+ +AH++ R+ GDR +++ GL ++ A
Sbjct: 23 FTYIDYEQDWAGITETLTWSEVFRRTRIVAHEV---RRHCTT-GDRAVILAPQGLAYIAA 78
Query: 547 FFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNL 606
F G M+A + + + S S IL+T AV +
Sbjct: 79 FLGSMQAGAIAVPLSVPQIGSHDERVSAVLADASPS----VILTTSAVAEAV--AEHIHR 132
Query: 607 PWLHTDSWVKNSKNL-LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK 665
P + + +L L N F +LQ+TSGST GVMI+H L N +
Sbjct: 133 PNTNNVGPIIEIDSLDLTGNSPSFRVKDLPSAAYLQYTSGSTRAPAGVMISHRNLQANFQ 192
Query: 666 LMRKRY------KSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLL 719
+ Y + T +VSWLP YHDMGL+ G+ ++GG + L SPL F++ P
Sbjct: 193 QLMSNYFGDRNGVAPPDTTIVSWLPFYHDMGLVLGIIAPILGGYRSELTSPLAFLQRPAR 252
Query: 720 WLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779
WL +++ + SA PNFAFEL VR+ + + DL ++ + AE V T+ RF
Sbjct: 253 WLHSLANGSPSWSAAPNFAFELAVRKTTDAD--IEGLDLGNVLGITSGAERVHPNTLSRF 310
Query: 780 VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQ-GRVCCGYVDQNDPDVD- 837
P+ + ++ P YGLAE ++V+ KP ++ ++ ++ G ++ +P
Sbjct: 311 CNRFAPYNFREDMIRPSYGLAEATLYVASRNSGDKPEVVYFEPDKLSTGSANRCEPKTGT 370
Query: 838 ------------IRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQ 885
+RIV+P+T E G GE+W+ + GYW + + ++ TF L
Sbjct: 371 PLLSYGMPTSPTVRIVDPDTCIEC-PAGTIGEIWVKGDNVAEGYWNKPDETRHTFGAMLV 429
Query: 886 N-NRGR---KYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRP 941
+ + G + RTGDLG + + + FI GR+KD++IV GRN Y D+E TV+ T
Sbjct: 430 HPSAGTPDGSWLRTGDLGFLSEDEMFIVGRMKDMLIVYGRNHYPEDIESTVQEITG---- 485
Query: 942 GCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK-DVIENIKTRVVEE-HG 999
G A I VP + + K ++V + L ++ + G+ +D+ DVI+N T + HG
Sbjct: 486 GRVAAISVPVDH-TEKLVTV------IELKLLGDSA-GEAMDELDVIKNNVTAAISRSHG 537
Query: 1000 VTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
+ VA + L+ P ++ TTSGKI+R C++Q+
Sbjct: 538 LNVADLVLVPPGSIPTTTSGKIRRAACVEQY 568
|
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| TIGR_CMR|CBU_0324 CBU_0324 "AMP-binding enzyme family protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 1.0e-51, P = 1.0e-51
Identities = 145/463 (31%), Positives = 233/463 (50%)
Query: 493 INEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMR 552
++ +G + TY EL+ A +A +LL+ PGDR +LVY F+ A F C+
Sbjct: 17 VDSQGATKREITYFELNEKARCLA-QLLSQ---TAAPGDRAILVYDTDTHFIIALFACLY 72
Query: 553 AKXXXXXXXXXXXXQ-RGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHT 611
A Q R A +++NI +L+T + + + L T
Sbjct: 73 AGIIAVPAYPPTQIQNRVNVAAYRLKNIILDSEPALLLTTQKFLQFLPEENG-QFKKLAT 131
Query: 612 DSW--VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK 669
D N+ +L+ + ++E + LQ+TSGST + KGVMITH + +NV +
Sbjct: 132 DQMNLTGNAPDLIPK----YSE-----IALLQYTSGSTSNPKGVMITHENIFNNVSNILN 182
Query: 670 RYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA 729
K +VSWLP HDMG++ G+F + G ++L SPL F++ P++WLE +SK
Sbjct: 183 LEKPGFLQSVVSWLPLTHDMGIVAGIFLPLFNGIPSVLLSPLDFLRRPIIWLELISKLPD 242
Query: 730 THSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLS 789
S GPNFA+EL +R+ ++ ++R+ +LS + +E T ++F++ G
Sbjct: 243 VISGGPNFAYELCHQRV--NEVQLRTLNLSHWRVAFAGSEMNHVKTYQQFLQKFSACGFD 300
Query: 790 QGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849
+ P YGLAE+ V+ + P+I+D Q + G+ + D ++ IVNP + + +
Sbjct: 301 EKAFYPCYGLAESTVYATGGVVNA-PVIID-QSLLSVGHCFK---DHELLIVNPNSRQVL 355
Query: 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFIT 909
E G GE+W+ PS GYW + L++ F +G Y RTGDLG I G+ F
Sbjct: 356 SE-GTVGEIWLKGPSVAKGYWKNKVLTESVFDAYTHEGKG-PYLRTGDLGFIRKGELFFY 413
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
GR+KD+II+ G+ D+E V S E+IR A + ++
Sbjct: 414 GRLKDIIIIRGKTYPPEDIEWAVVQSDENIRTASVAAFSILQD 456
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| UNIPROTKB|Q50586 fadD25 "Putative fatty-acid--CoA ligase fadD25" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 5.8e-51, P = 5.8e-51
Identities = 174/599 (29%), Positives = 285/599 (47%)
Query: 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQS-TYEELDANASRIAHKLLTSRKPVI 527
SSL G L+ + + K F V ++ T+ +L +A +L
Sbjct: 6 SSLPGVLRERASFQPNDKALTFIDYERSWDGVEETLTWSQLYRRTLNLAAQLREHGST-- 63
Query: 528 KPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVA 587
GDR L++ LD+V +F ++A Q G + + + A+
Sbjct: 64 --GDRALILAPQSLDYVVSFIASLQA---GIVAVPLSIPQGGAHDERTVSVFADTAPAIV 118
Query: 588 ILSTIGYHSAVR-VGSWP--NLPW-LHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFT 643
+ ++ + V V P N P + D +++ PD L +LQ+T
Sbjct: 119 LTASSVVDNVVEYVQPQPGQNAPAVIEVDRLDLDARPSSGSRSAA--HGHPDIL-YLQYT 175
Query: 644 SGSTGDAKGVMITHGGLIHNVK-LMRKRYKSTSK-----TVLVSWLPQYHDMGLIGGLFT 697
SGST GVM+++ L N + +M Y K + +VSWLP YHDMG + GL
Sbjct: 176 SGSTRTPAGVMVSNKNLFANFEQIMTSYYGVYGKVAPPGSTVVSWLPFYHDMGFVLGLIL 235
Query: 698 AMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK-VRSF 756
++ G A+L SP+ F++ P W++ ++ +A PNFAF+L R+ +KD+ +
Sbjct: 236 PILAGIPAVLTSPIGFLQRPARWIQMLASNTLAFTAAPNFAFDLASRK---TKDEDMEGL 292
Query: 757 DLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPI 816
DL + ++ +E V+ T+KRF++ PF L + P YG+AE V+V+ P
Sbjct: 293 DLGGVHGILNGSERVQPVTLKRFIDRFAPFNLDPKAIRPSYGMAEATVYVATRKAGQPPK 352
Query: 817 ILDWQG-RVCCGYVDQNDPD----------VD---IRIVNPETSEEIGEPGKEGEVWISS 862
I+ + ++ G ++ + D VD +RIV+P+T E G GE+W+
Sbjct: 353 IVQFDPQKLPDGQAERTESDGGTPLVSYGIVDTQLVRIVDPDTGIE-RPAGTIGEIWVHG 411
Query: 863 PSAGIGYWGREELSQITFRNELQN-NRGRK---YTRTGDLGRIIDGKFFITGRIKDLIIV 918
+ IGYW + E ++ TF + N + G + RTGD G + +G+ FI GRIKDL+IV
Sbjct: 412 DNVAIGYWQKPEATERTFSATIVNPSEGTPAGPWLRTGDSGFLSEGELFIMGRIKDLLIV 471
Query: 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRD 978
GRN D+E T+++ I PG CA I V E G+++ LV I E++
Sbjct: 472 YGRNHSPDDIEATIQT----ISPGRCAAIAVSEH-----------GAEK--LVAIIELKK 514
Query: 979 GKPVDKDVIEN---IKTRVV----EEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
D + E +K V + HG++VA + L+ P ++ TTSGKI+R +C++ +
Sbjct: 515 KDESDDEAAERLGFVKREVTSAISKSHGLSVADLVLVSPGSIPITTSGKIRRAQCVELY 573
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.3.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024666001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (2230 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2280 | |||
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-175 | |
| cd08151 | 328 | cd08151, AOS, Allene oxide synthase | 1e-127 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-93 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-91 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 7e-90 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 2e-87 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 8e-83 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 1e-79 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-79 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 1e-76 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 9e-73 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 2e-72 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 7e-67 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-60 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 2e-53 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 6e-53 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-50 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-47 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-43 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 5e-42 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-41 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 5e-40 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-39 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 8e-38 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-37 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-36 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-36 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 6e-36 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-35 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-33 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 7e-33 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-32 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 8e-32 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 9e-32 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-31 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-31 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-31 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-28 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 4e-28 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-27 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 4e-27 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 8e-26 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-25 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 3e-25 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 8e-25 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 8e-25 | |
| cd08150 | 283 | cd08150, catalase_like, Catalase-like heme-binding | 1e-24 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-24 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-23 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 4e-23 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 5e-23 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 7e-23 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 8e-22 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 8e-22 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-21 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-21 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-21 | |
| TIGR02353 | 695 | TIGR02353, NRPS_term_dom, non-ribosomal peptide sy | 2e-21 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 3e-21 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-21 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-21 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 1e-20 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-20 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 3e-20 | |
| TIGR02353 | 695 | TIGR02353, NRPS_term_dom, non-ribosomal peptide sy | 6e-20 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-19 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-19 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 3e-19 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-19 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 4e-19 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 4e-19 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 9e-19 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-18 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-18 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-17 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 5e-17 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-16 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-16 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 4e-16 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 4e-16 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-15 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-15 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-15 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 4e-15 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 4e-15 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 8e-15 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-14 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 2e-14 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 3e-14 | |
| cd08152 | 305 | cd08152, y4iL_like, Catalase-like heme-binding pro | 8e-14 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 9e-14 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 1e-13 | |
| TIGR02353 | 695 | TIGR02353, NRPS_term_dom, non-ribosomal peptide sy | 2e-13 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-13 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-13 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 3e-13 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-13 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-13 | |
| pfam00199 | 383 | pfam00199, Catalase, Catalase | 9e-13 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-12 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-12 | |
| cd08153 | 295 | cd08153, srpA_like, Catalase-like heme-binding pro | 3e-12 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 4e-12 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 8e-12 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 3e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-11 | |
| COG0753 | 496 | COG0753, KatE, Catalase [Inorganic ion transport a | 6e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-10 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-10 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-10 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 3e-10 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-10 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-10 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 4e-10 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 5e-10 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-10 | |
| TIGR02353 | 695 | TIGR02353, NRPS_term_dom, non-ribosomal peptide sy | 9e-10 | |
| TIGR02353 | 695 | TIGR02353, NRPS_term_dom, non-ribosomal peptide sy | 9e-10 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-09 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-09 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-09 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 5e-09 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 5e-09 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 7e-09 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 8e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-08 | |
| PRK07233 | 434 | PRK07233, PRK07233, hypothetical protein; Provisio | 1e-08 | |
| pfam00550 | 66 | pfam00550, PP-binding, Phosphopantetheine attachme | 2e-08 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 3e-08 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 3e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-08 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 6e-08 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 6e-08 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 8e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-07 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 2e-07 | |
| COG1233 | 487 | COG1233, COG1233, Phytoene dehydrogenase and relat | 2e-07 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 3e-07 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 4e-07 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 4e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-07 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 8e-07 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 9e-07 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 1e-06 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 1e-06 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-06 | |
| COG1232 | 444 | COG1232, HemY, Protoporphyrinogen oxidase [Coenzym | 2e-06 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 2e-06 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-06 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 3e-06 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 3e-06 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-06 | |
| PRK07208 | 479 | PRK07208, PRK07208, hypothetical protein; Provisio | 5e-06 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 6e-06 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 9e-06 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-05 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-05 | |
| PRK04176 | 257 | PRK04176, PRK04176, ribulose-1,5-biphosphate synth | 1e-05 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-05 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 2e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-05 | |
| COG0665 | 387 | COG0665, DadA, Glycine/D-amino acid oxidases (deam | 3e-05 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 3e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 4e-05 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 4e-05 | |
| COG0654 | 387 | COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox | 4e-05 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 4e-05 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 4e-05 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 5e-05 | |
| pfam01266 | 234 | pfam01266, DAO, FAD dependent oxidoreductase | 5e-05 | |
| TIGR02032 | 295 | TIGR02032, GG-red-SF, geranylgeranyl reductase fam | 5e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 7e-05 | |
| cd03354 | 101 | cd03354, LbH_SAT, Serine acetyltransferase (SAT): | 8e-05 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 9e-05 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 9e-05 | |
| cd03360 | 197 | cd03360, LbH_AT_putative, Putative Acyltransferase | 1e-04 | |
| cd05913 | 424 | cd05913, PaaK, Phenylacetate-CoA ligase (also know | 2e-04 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 2e-04 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-04 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 2e-04 | |
| PRK12409 | 410 | PRK12409, PRK12409, D-amino acid dehydrogenase sma | 3e-04 | |
| cd04647 | 109 | cd04647, LbH_MAT_like, Maltose O-acyltransferase ( | 3e-04 | |
| TIGR02353 | 695 | TIGR02353, NRPS_term_dom, non-ribosomal peptide sy | 4e-04 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 4e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 4e-04 | |
| smart01060 | 373 | smart01060, Catalase, Catalases are antioxidant en | 4e-04 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 5e-04 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 5e-04 | |
| COG3349 | 485 | COG3349, COG3349, Uncharacterized conserved protei | 5e-04 | |
| cd00208 | 78 | cd00208, LbetaH, Left-handed parallel beta-Helix ( | 5e-04 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 6e-04 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-04 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 7e-04 | |
| COG1635 | 262 | COG1635, THI4, Ribulose 1,5-bisphosphate synthetas | 8e-04 | |
| pfam13454 | 153 | pfam13454, NAD_binding_9, FAD-NAD(P)-binding | 8e-04 | |
| cd04647 | 109 | cd04647, LbH_MAT_like, Maltose O-acyltransferase ( | 9e-04 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 9e-04 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.001 | |
| cd08156 | 429 | cd08156, catalase_clade_3, Clade 3 of the heme-bin | 0.001 | |
| COG1148 | 622 | COG1148, HdrA, Heterodisulfide reductase, subunit | 0.001 | |
| COG1541 | 438 | COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme | 0.001 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 0.001 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.001 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 0.001 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.001 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 0.001 | |
| cd04645 | 153 | cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra | 0.002 | |
| COG3380 | 331 | COG3380, COG3380, Predicted NAD/FAD-dependent oxid | 0.002 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 0.002 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 0.002 | |
| PRK12779 | 944 | PRK12779, PRK12779, putative bifunctional glutamat | 0.002 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 0.002 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 0.002 | |
| TIGR02155 | 422 | TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase | 0.002 | |
| COG0110 | 190 | COG0110, WbbJ, Acetyltransferase (isoleucine patch | 0.002 | |
| COG1231 | 450 | COG1231, COG1231, Monoamine oxidase [Amino acid tr | 0.002 | |
| COG1232 | 444 | COG1232, HemY, Protoporphyrinogen oxidase [Coenzym | 0.003 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 0.003 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 0.003 | |
| cd08157 | 451 | cd08157, catalase_fungal, Fungal catalases similar | 0.004 | |
| pfam12831 | 415 | pfam12831, FAD_oxidored, FAD dependent oxidoreduct | 0.004 | |
| smart00823 | 86 | smart00823, PKS_PP, Phosphopantetheine attachment | 0.004 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 546 bits (1408), Expect = e-175
Identities = 219/551 (39%), Positives = 290/551 (52%), Gaps = 50/551 (9%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY ELD A IA +L + PGDRVLL+ PGLDFV AFFGC+ A + VP PP
Sbjct: 25 TYAELDRRARAIAARLQ----ALGAPGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP 80
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
L R L I GA A+L+T +A+R L + L A
Sbjct: 81 RRLGRHLARLAAI---LADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAA 137
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
+ PDD+ FLQ+TSGSTG KGVM+THG L+ N++ + + + V VSWL
Sbjct: 138 ADWRPPPPD-PDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWL 196
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMV 743
P YHDMGLIGGL + G +L SPL F++ PL WLE +S+YRAT S PNFA++L V
Sbjct: 197 PLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYRATVSGAPNFAYDLCV 256
Query: 744 RRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENC 803
RR+ +++ DLSS + AEPVR T++RF E P G P YGLAE
Sbjct: 257 RRV--RDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFLPCYGLAEAT 314
Query: 804 VFVSCAYGQGKPIILD------WQGR--------------VCCGYVDQNDPDVDIRIVNP 843
+ VS P++L +G V CG P ++RIV+P
Sbjct: 315 LAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRP---LPGHEVRIVDP 371
Query: 844 ETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID 903
ET + G+ GE+W+ PS GYW R E + TF L + G + RTGDLG + D
Sbjct: 372 ETRRPLP-DGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGG-WLRTGDLGFLHD 429
Query: 904 GKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSD 963
G+ ++TGR+KDLII+ GRN Y D+E TVE + +RPG A V +
Sbjct: 430 GELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGD----------- 478
Query: 964 GSDQVGLVVIAEV-RDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKI 1021
+ LVV+AEV R G P D + E I+ V EHGV A V L++P T+ KT+SGKI
Sbjct: 479 --GEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTSSGKI 536
Query: 1022 KRFECLKQFVD 1032
+R C + ++
Sbjct: 537 QRRACRELYLA 547
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|163707 cd08151, AOS, Allene oxide synthase | Back alignment and domain information |
|---|
Score = 401 bits (1033), Expect = e-127
Identities = 137/334 (41%), Positives = 184/334 (55%), Gaps = 9/334 (2%)
Query: 1688 EEMDMKYKKIVGNLSANLAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGK 1747
E +D + KKI NL+ AA TLK R H IGV +G LT+ P+H F GK
Sbjct: 1 EFLDSELKKIELNLATMFAAATLKTGRRGTHTIGVGAKGVLTVLAESD-FPEHAFFTAGK 59
Query: 1748 CYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFA 1807
+PVI+RH+N + DDDA +D RGAA+R + + + + LDL + TG +F T FA
Sbjct: 60 RFPVILRHANIVGGDDDASLDGRGAALRFLNAGDDD-AGPLDLVMNTGESFGFWTAASFA 118
Query: 1808 TWLVCGLAAREEHVKRV-PHIRDAVWKSL-RLSDSYAEMHYYSNICRLFRFTDGQEMYVK 1865
+ GL RE+ K P R AVW SL R DSY ++HYYS IC F DG+ Y +
Sbjct: 119 DFAGAGLPFREKAAKLRGPLARYAVWASLRRAPDSYTDLHYYSQICYEFVALDGKSRYAR 178
Query: 1866 FKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYI 1925
F+L P D D GE I +PR DTRP +L +EF++R+ SP GVRY
Sbjct: 179 FRLLPPDADTEWDLGEDVLETIFQRPRLYLPRLPGDTRPKDYLRNEFRQRLQSP-GVRYR 237
Query: 1926 FQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKC 1985
Q+Q+R + D +ALDC +PWDE E+P++D+ + + L +E EKL FNP
Sbjct: 238 LQIQLREVSDDA--TAVALDCCRPWDEDEHPWLDLAVVRLGAPLPNDELEKLAFNPG-NT 294
Query: 1986 NEIDVIPATTSSQ-SASIDHGRSLIYEICQHLRN 2018
E +P + AS+ H RSL+YEI Q LR
Sbjct: 295 PESLGLPLAYCADDYASLGHLRSLVYEISQRLRK 328
|
Allene oxide synthase converts a fatty acid hydroperoxide to an allene oxide, which is an unstable epoxide. In corals, the enzyme is part of a eiconaosid synthesis pathway that is initiated by a lipoxygenase, which generates the fatty acid hydroperoxides in the first step. The structure of allene oxide synthase closely resembles that of catalase, but allene oxide synthase does not have catalase activity. Length = 328 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 314 bits (808), Expect = 3e-93
Identities = 173/540 (32%), Positives = 270/540 (50%), Gaps = 69/540 (12%)
Query: 529 PGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAI 588
GDR +++ GL+++ AF G ++A ++ VP+ P +GG ++ + + +
Sbjct: 58 TGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVP----QGGAHDERVSAVLRDTSPSVV 113
Query: 589 LSTIGYHSAV--RVGSWPNLPWLHTDSWVK--NSKNLLAENVVCFTESQPDDLCFLQFTS 644
L+T SAV V + + V + +L + +LQ+TS
Sbjct: 114 LTT----SAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTS 169
Query: 645 GSTGDAKGVMITHGGLIHNV-KLMRKRYKSTSK-----TVLVSWLPQYHDMGLIGGLFTA 698
GST GVM++H +I N +LM + T T +VSWLP YHDMGL+ G+
Sbjct: 170 GSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAP 229
Query: 699 MVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDL 758
++GG A+L SP+ F++ P W++ ++ SA PNFAFEL VR+ +S D + DL
Sbjct: 230 ILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAVRK--TSDDDMAGLDL 287
Query: 759 SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFV-SCAYGQGKPII 817
+ ++ +E V T+KRF + PF L + + P YGLAE V+V + GQ +
Sbjct: 288 GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESV 347
Query: 818 -LDWQ----GRV--C--------CGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862
D++ G C Y P V RIV+P+T E G GE+W+
Sbjct: 348 RFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTV--RIVDPDTCIECP-AGTVGEIWVHG 404
Query: 863 PSAGIGYWGREELSQITFRNELQN-----NRGRKYTRTGDLGRIIDGKFFITGRIKDLII 917
+ GYW + E ++ TF L + G + RTGDLG I +G+ FI GRIKDL+I
Sbjct: 405 DNVAAGYWQKPEETERTFGATLVDPSPGTPEG-PWLRTGDLGFISEGELFIVGRIKDLLI 463
Query: 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR 977
V GRN Y D+E T++ I G A I VP+ DG+++ LV I E++
Sbjct: 464 VDGRNHYPDDIEATIQE----ITGGRVAAISVPD-----------DGTEK--LVAIIELK 506
Query: 978 DGKPVDKDVIEN---IKTRVV----EEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
D++ ++ +K V + HG++VA + L+ P ++ TTSGKI+R C++Q+
Sbjct: 507 KRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQY 566
|
Length = 578 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = 8e-91
Identities = 218/691 (31%), Positives = 326/691 (47%), Gaps = 87/691 (12%)
Query: 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDF 543
T + ++ ++ +Y +LD A IA L GDR +L++ G D+
Sbjct: 22 TPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQAR----ASFGDRAVLLFPSGPDY 77
Query: 544 VDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR---V 600
V AFFGC+ A V+ VP PP+ +R Q L +I +L+ ++
Sbjct: 78 VAAFFGCLYAGVIAVPAYPPESARRHHQERLL--SIIADAEPRLLLTVADLRDSLLQMEE 135
Query: 601 GSWPNLP-WLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGG 659
+ N P L D+ LAE QPDD+ FLQ+TSGST KGV ++HG
Sbjct: 136 LAAANAPELLCVDTL----DPALAEAWQE-PALQPDDIAFLQYTSGSTALPKGVQVSHGN 190
Query: 660 LIHNVKLMRKRY--KSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNP 717
L+ N +L+R + V+VSWLP YHDMGLIGGL + G +L SP F++ P
Sbjct: 191 LVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERP 250
Query: 718 LLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVK 777
L WLE +S+Y T S GP+FA+ L R+ S+ + DLS + +EP+RQ +++
Sbjct: 251 LRWLEAISEYGGTISGGPDFAYRLCSERV--SESALERLDLSRWRVAYSGSEPIRQDSLE 308
Query: 778 RFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY-GQGKPII-LDWQG------------- 822
RF E G YGLAE +FVS GQG P + LD +
Sbjct: 309 RFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSV 368
Query: 823 RVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRN 882
+ CG + P + IV+P++ E +G+ + GE+W S PS GYW E S TF
Sbjct: 369 LMSCGR---SQPGHAVLIVDPQSLEVLGD-NRVGEIWASGPSIAHGYWRNPEASAKTF-- 422
Query: 883 ELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG 942
+ GR + RTGDLG + DG+ F+TGR+KD++IV G N+Y D+EKTVE E +R G
Sbjct: 423 --VEHDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKG 480
Query: 943 CCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK-----DVIENIKTRVVEE 997
A V G + +G + AE+ + V K +I++I+ V E
Sbjct: 481 RVAAFAVNH-----------QGEEGIG--IAAEI--SRSVQKILPPQALIKSIRQAVAEA 525
Query: 998 HGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTC 1057
+ V L+ P + KT+SGK++R C + DG+L+ LF
Sbjct: 526 CQEAPSVVLLLNPGALPKTSSGKLQRSACRLRLADGSLD--SYALF-------------- 569
Query: 1058 KEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGV 1117
P L + A S ++ + + EQ + + +V+A D G +SI
Sbjct: 570 -------PALQAVEAAQTAASGDELQARIAAIWCEQ--LKVEQVAADDHFFLLGGNSIAA 620
Query: 1118 VRAAQKLSDFLGVPVGAVDIFTATCIADLAS 1148
+ +L D LG+ + +F A +A ++
Sbjct: 621 TQVVARLRDELGIDLNLRQLFEAPTLAAFSA 651
|
Length = 4334 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 7e-90
Identities = 150/550 (27%), Positives = 235/550 (42%), Gaps = 71/550 (12%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY ELD A+R+A L +KPGDRV ++ +F+ AF +RA + VP+ P
Sbjct: 40 TYRELDRRANRLAAALQALG---VKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPR 96
Query: 564 DPLQRGGQALLKIENISKSCGAVAIL---STIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
++ I GA ++ AV + P + + +
Sbjct: 97 -------LTPRELAYILNDAGAKVLITSAEFAALLEAVA-EALPVVLVVLLVGDADDRLP 148
Query: 621 LLAENVVC--------FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK 672
+ E + PDDL FL +TSG+TG KGV++TH L+ N +
Sbjct: 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208
Query: 673 S--TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRAT 730
T V++SWLP +H GLI GL ++GG T +L SP F +LWL + KY+ T
Sbjct: 209 GGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL--IEKYKVT 266
Query: 731 HSAG-PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLS 789
+G P F EL+ + D SS++ ++ P+ ++RF E P
Sbjct: 267 VLSGVPTFLRELLDNPEKDDDD-----LSSSLRLVLSGGAPLPPELLERFEERFGPI--- 318
Query: 790 QGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849
+ GYGL E V+ GR G V++RIV+P+ E +
Sbjct: 319 --AILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPG--------VEVRIVDPDGGEVL 368
Query: 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFI 908
PG+ GE+W+ P+ GYW R E + F + + RTGDLG + DG +I
Sbjct: 369 --PGEVGEIWVRGPNVMKGYWNRPEATAEAFDED-------GWLRTGDLGYVDEDGYLYI 419
Query: 909 TGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQV 968
GR+KDLII G N+Y ++E + EH AV+GVP+E +
Sbjct: 420 VGRLKDLIISGGENIYPEEIEAVLA---EHPAVAEAAVVGVPDER-----------WGER 465
Query: 969 GLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLK 1028
+ V+ V + E ++ + + + ++ + +T SGKI R +
Sbjct: 466 VVAVV--VLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALRE 523
Query: 1029 QFVDGTLNTV 1038
++ +
Sbjct: 524 EYRAEPRLDL 533
|
Length = 534 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 300 bits (769), Expect = 2e-87
Identities = 196/638 (30%), Positives = 303/638 (47%), Gaps = 100/638 (15%)
Query: 463 VEFPELSSLDGYLKHWGTHRITQKKTLFTWIN----EEGVAVNQSTYEELDANASRIAHK 518
+ FP ++L +++ W ++ K + +++ +GVA T+ + A + +
Sbjct: 15 IRFPPNTNLVRHVERWA--KVRGDKLAYRFLDFSTERDGVA-RDLTWSQFGARNRAVGAR 71
Query: 519 LLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIEN 578
L + V KPGDRV ++ LD++ AFFG + A + VP+ P G ++
Sbjct: 72 L----QQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVG----RLHA 123
Query: 579 ISKSCGAVAILSTIGYHSAVR----------------VGSWPNLPWLHTDSWVKNSKNLL 622
+ C AIL+T VR V + P+ +WV
Sbjct: 124 VLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDEV---GATWVP------ 174
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
E+ D + +LQ+TSGST GV ITH L NV + + VSW
Sbjct: 175 -------PEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSW 227
Query: 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA----THSAGPNFA 738
LP +HDMGLI L A++G + SP F++ P W+ +++ T SA PNFA
Sbjct: 228 LPFFHDMGLITVLLPALLGHYITFM-SPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFA 286
Query: 739 FELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYG 798
FE R KD DLS++K L+ +EPV ++++F E P+GL + P YG
Sbjct: 287 FEHAAAR-GLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYG 345
Query: 799 LAENCVFVSCAYGQGKP--IILDWQ----GR--------------VCCGYVDQNDPDVDI 838
+AE +FVS +P I +D GR V G V ++ V
Sbjct: 346 MAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAV-- 403
Query: 839 RIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNN----------R 888
IV+PET+ E+ + G+ GE+W+ + G GYWG+ E + TF+N L++
Sbjct: 404 -IVDPETASELPD-GQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPD 461
Query: 889 GRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948
+ RTGD G DG+ +ITGR+KDL+I+ GRN Y D+E T + +T+ +R G A
Sbjct: 462 DALWVRTGDYGVYFDGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFS 521
Query: 949 VP-----EEVL--STKGISV--SDGSDQVGLVVIAEVRDG--KPVDKDVIENIKTRVVEE 997
VP + V S G+ D S+Q LV++AE G K + + ++I+ +
Sbjct: 522 VPANQLPQVVFDDSHAGLKFDPEDTSEQ--LVIVAERAPGAHKLDPQPIADDIRAAIAVR 579
Query: 998 HGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTL 1035
HGVTV V L+ ++ +T+SGKI R C ++DG+L
Sbjct: 580 HGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGSL 617
|
Length = 631 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 281 bits (722), Expect = 8e-83
Identities = 165/566 (29%), Positives = 265/566 (46%), Gaps = 94/566 (16%)
Query: 490 FTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549
T+I + +YE+L A ++ L +K IKPGD V+ DF+ F+
Sbjct: 4 ITFIEGDKKEKF-ISYEQLFTRALKVLGAL---QKLGIKPGDEVVFQIEDNEDFIYVFWA 59
Query: 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNL--P 607
C+ ++PVP+ + + LK+ + W L P
Sbjct: 60 CILGGIIPVPLSYGNTDEH----KLKLLRV-----------------------WNILNNP 92
Query: 608 WLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM 667
+L TD ++ L PDD+ F+QF+SGSTG+ KGV++TH L+ N++ +
Sbjct: 93 FLITD------RDSLLSL--------PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAI 138
Query: 668 RKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKY 727
+ + TS+ V +SW+P HDMGLIG T G L FI+ PLLWL+ S++
Sbjct: 139 IEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRRPLLWLDKASQH 198
Query: 728 RATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFG 787
RAT + PNF ++ +++ ++ K +DLSS++ + AEP+ + F+E PFG
Sbjct: 199 RATILSSPNFGYKYLLKHFKTEKII--DWDLSSVRLIFNGAEPISADLCEEFLEKMAPFG 256
Query: 788 LSQGVMAPGYGLAENCVFVSCAYGQGKPII-------LDWQGRVCCGYVDQND------- 833
L M P YGLAE + VS L ++ +D
Sbjct: 257 LRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEV 316
Query: 834 ----PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRG 889
+IRIV+ + E + + G + I + GY+ E + + G
Sbjct: 317 GSPIDGCEIRIVD-DAGEVLPD-RTIGHIQIKGDNVTSGYYNNPEAT-----KKSITPDG 369
Query: 890 RKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGV 949
+ +TGDLG + +G+ ITGR KD+IIV G+N Y D+E+ E E I+ G A GV
Sbjct: 370 --WLKTGDLGFLRNGRLVITGRAKDIIIVNGQNYYPHDIERVAE-QVEGIKLGRVAACGV 426
Query: 950 PEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK--DVIENIKTRVVEEHGVTVASVKL 1007
+E + S++V V+ E R + +D + IK V ++ G+ + V
Sbjct: 427 YDE---------KEQSEEV--VIFVEYR--QSLDDFTPLALKIKRHVNKKMGLNIDHVIP 473
Query: 1008 IKPRTMSKTTSGKIKRFECLKQFVDG 1033
+ R++ KTTSGKI+R++ +QF++G
Sbjct: 474 V--RSIPKTTSGKIQRYKLAQQFLNG 497
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 1e-79
Identities = 169/570 (29%), Positives = 255/570 (44%), Gaps = 63/570 (11%)
Query: 497 GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVL 556
G Y+ L A A A +LL +KPGDRV L+ DFV+AFF C A ++
Sbjct: 44 GQLEEALPYQTLRARAEAGARRLLALG---LKPGDRVALIAETDGDFVEAFFACQYAGLV 100
Query: 557 PVPVLPPDPLQRGGQA--LLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSW 614
PVP+ P P+ GG+ + ++ + S AI++ V + P LH S
Sbjct: 101 PVPL--PLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVN-EATHGNPLLHVLSH 157
Query: 615 VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK-LMRKRYKS 673
L E V PDD+ +LQ++SGST +GV+ITH L+ N++ + K
Sbjct: 158 A--WFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKV 215
Query: 674 TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSA 733
VSWLP YHDMGL+G L T + + F + PL WL+ +S+ R T S
Sbjct: 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISY 275
Query: 734 GPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM 793
P F +EL RR+ +SKD DLS + + A+ +R + +F E P G
Sbjct: 276 SPPFGYELCARRV-NSKDLA-ELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAF 333
Query: 794 APGYGLAENCVFVSCA-YGQG-------------KPIILDWQGR-------VCCGYVDQN 832
P YGLAE + VS + G G + + V CG
Sbjct: 334 MPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKAL-- 391
Query: 833 DPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKY 892
P +I I N E + E G + + PS GY+ EE + +
Sbjct: 392 -PGHEIEIRN-EAGMPLPERVV-GHICVRGPSLMSGYFRDEESQDVL--------AADGW 440
Query: 893 TRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
TGDLG ++DG +ITGR KDLII+ GRN++ D+E E E +R G A + +E
Sbjct: 441 LDTGDLGYLLDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPE-LRSGDAAAFSIAQE 499
Query: 953 VLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK-DVIENIKTRVVEEHGVTVASVKLIKPR 1011
+ +V++ + R + +I + V E GV +V+L+ P
Sbjct: 500 -------------NGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEA-AVELVPPH 545
Query: 1012 TMSKTTSGKIKRFECLKQFVDGTLNTVPEP 1041
++ +T+SGK+ R + K+++ G ++
Sbjct: 546 SLPRTSSGKLSRAKAKKRYLSGAFASLDVA 575
|
Length = 579 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 2e-79
Identities = 166/573 (28%), Positives = 257/573 (44%), Gaps = 69/573 (12%)
Query: 490 FTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549
T+I+ +G QS Y EL A RI L R +KPGD V+L DFV AF+
Sbjct: 28 ITYIDADGSEEFQS-YAELLEEAERILAGL---RALGLKPGDSVILQLERNEDFVTAFWA 83
Query: 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR-VGSWPNLPW 608
C+ +PVPV P A+ K+ NI + G+ IL+ +A+ + + L
Sbjct: 84 CVLGGFVPVPVAVPPTYDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEA 143
Query: 609 LHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR 668
L + + + ++PDD L TSGSTG K V++TH ++
Sbjct: 144 LRVLAIEELRSAPPDAPLH---PARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV 200
Query: 669 KRYKSTSKTVLVSWLPQYHDMGLIGGLFT----AMVGGSTAILFSPLTFIKNPLLWLETM 724
+ T V ++W+P H +GG+ + G I + +PL WL+ +
Sbjct: 201 QVNGFTPDDVSLNWMPLDH----VGGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLI 256
Query: 725 SKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTR 784
+YR T + PNFAF L+ LE +D RS+DLSS+++++ A E V T++RF+EL
Sbjct: 257 DRYRVTITWAPNFAFALLNDALERIED--RSWDLSSLRYIINAGEAVVAKTIRRFLELLA 314
Query: 785 PFGLSQGVMAPGYGLAENCVFVS----CAYG----------QGKPIILDWQGR------V 824
P+GL + P +G++E C V+ G P+ V
Sbjct: 315 PYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFV 374
Query: 825 CCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNEL 884
G P V IRIV+ + + G+ G + + P+ GY+ E + F +
Sbjct: 375 ELGRP---IPGVAIRIVDEDG--ALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTED- 428
Query: 885 QNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCC 944
+ RTGDLG + DG+ ITGR KD+II+ G N Y+ ++E VE
Sbjct: 429 ------GWFRTGDLGFLHDGRLTITGREKDMIIINGVNYYNHEIEAAVE----------- 471
Query: 945 AVIGVPEEVLSTKGISVSD---GSDQVGLV-VIAEVRDGKPVDKDVIENIKTRVVEEHGV 1000
V GV E T +V D G+D++ + V D + ++ I+T V + G+
Sbjct: 472 QVPGV--EPSFTAACAVRDAGSGTDELAVFFVPRYDLDDRLA--ALLRAIRTHVARKIGI 527
Query: 1001 TVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033
A V + KT+ GKI+R + K+F G
Sbjct: 528 APAYVIPLAKEDFPKTSLGKIQRAQLRKRFEAG 560
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 1e-76
Identities = 191/591 (32%), Positives = 284/591 (48%), Gaps = 93/591 (15%)
Query: 495 EEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAK 554
G AV + T+ +L + +L + V PGDRV ++ G+D+V FF ++A
Sbjct: 62 AAGCAV-ELTWTQLGVRLRAVGARL----QQVAGPGDRVAILAPQGIDYVAGFFAAIKAG 116
Query: 555 VLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLH---- 610
+ VP+ P+ L G A +++ + +L+T AV G NLP L
Sbjct: 117 TIAVPLFAPE-LP--GHAE-RLDTALRDAEPTVVLTTTAAAEAVE-GFLRNLPRLRRPRV 171
Query: 611 --TDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR 668
D+ + +S E+ V E DD+ LQ+TSGST GV ITH + N+ M
Sbjct: 172 IAIDA-IPDS---AGESFV-PVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQM- 225
Query: 669 KRYKSTSKTVL------VSWLPQYHDMGLIGGLFTAMVGG-STAILFSPLTFIKNPLLWL 721
S +L VSWLP YHDMGL F A+ GG ST L SP F++ P W+
Sbjct: 226 ----ILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHST--LMSPTAFVRRPQRWI 279
Query: 722 ETMS---KYRATHSAGPNFAFELMVRR-LESSKDKVRSFDLSSMKFLMVAAEPVRQTTVK 777
+ +S + +A PNFA+E +R L + D + DLS++ L++ +EPV V
Sbjct: 280 KALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDI---DLSNV-VLIIGSEPVSIDAVT 335
Query: 778 RFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKP--IILDWQ----GR-------- 823
F + P+GL + P YG+AE +FV+ +P + LD + GR
Sbjct: 336 TFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADA 395
Query: 824 ------VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQ 877
V CG V ++ V IV+P+T E+ + G+ GE+W+ + G GYWGR E ++
Sbjct: 396 PNAVAHVSCGQVARSQWAV---IVDPDTGAELPD-GEVGEIWLHGDNIGRGYWGRPEETE 451
Query: 878 ITFRNELQNNR-----------GRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSA 926
TF +LQ+ + RTGDLG +DG+ +ITGRI DLI++ GRN Y
Sbjct: 452 RTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYLDGELYITGRIADLIVIDGRNHYPQ 511
Query: 927 DVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAE--VRDGKPVDK 984
D+E TV ++ +R G VP D LV++AE +
Sbjct: 512 DIEATVAEASPMVRRGYVTAFTVP-------------AEDNERLVIVAERAAGTSRADPA 558
Query: 985 DVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTL 1035
I+ I+ V HG+ VA V+L+ + +TTSGK+ R C Q++DG L
Sbjct: 559 PAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGRL 609
|
Length = 612 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 9e-73
Identities = 106/436 (24%), Positives = 173/436 (39%), Gaps = 48/436 (11%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY ELD A+R+A L + + PGDRV ++ ++V A ++A VP+ P
Sbjct: 1 TYRELDERANRLAA-ALRALG--VGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPS 57
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR---------VGSWPNLPWLHTDSW 614
P +R + I + A +++ + +
Sbjct: 58 LPAER-------LAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDL 110
Query: 615 VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST 674
+ + A PDDL ++ +TSG+TG KGVM+TH L+ + +R+ T
Sbjct: 111 LDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLT 170
Query: 675 SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG 734
++ LP H G + +F ++ G T +L T +P L+ + KY+ T G
Sbjct: 171 PGDRVLLLLP-LHFDGSVWEIFGPLLAGGTLVLVPKFTL--DPARLLDLIEKYKVTVLYG 227
Query: 735 PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
L+++ E K DLSS++ ++ EP+ ++R E L
Sbjct: 228 VPTLLRLLLKAPEEKKY-----DLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVN---- 278
Query: 795 PGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
GYG E V + G P V++++++ E PG+
Sbjct: 279 -GYGPTETTVVATAN-----LPGDPEVKPGSIGRP---LPGVEVKVLDEEGEPV--PPGE 327
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIK 913
GE+ I P GY EL+ F + G RTGDLGR DG I GR
Sbjct: 328 VGELCIRGPGVARGYLNDPELTAERFVED-----GWGMYRTGDLGRWDEDGYLEILGRKD 382
Query: 914 DLIIVAGRNVYSADVE 929
D + + G + ++E
Sbjct: 383 DQVKIRGERIEPGEIE 398
|
Length = 412 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 2e-72
Identities = 136/418 (32%), Positives = 205/418 (49%), Gaps = 54/418 (12%)
Query: 631 ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKT-VLVSWLPQYHDM 689
E+ DDL +Q TSGSTG K V ITHG L N + M + +T V+VSWLP +HDM
Sbjct: 148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM 207
Query: 690 GLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749
G++G L M G+ + +P+ F+++PLLW E +SKYR T +A PNFA+ L+ RRL
Sbjct: 208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLR-R 266
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVS-C 808
+ K +FDLSS++F + AEP+ V+ ++ FGL + P YG+AE + VS
Sbjct: 267 QAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFS 326
Query: 809 AYGQG------KPIILDWQGR------------VCCGYVDQNDPDVDIRIVNPETSEEIG 850
G G +L R G P +++R+V+ E + +
Sbjct: 327 PCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPP---LPGLEVRVVD-EDGQVLP 382
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFIT 909
G G + + S GY I Q+ G + TGDLG + + G+ +
Sbjct: 383 PRGV-GVIELRGESVTPGY--LTMDGFI----PAQDADG--WLDTGDLGYLTEEGEVVVC 433
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVG 969
GR+KD+II+AGRN+Y D+E+ + E +RPG + + G + G
Sbjct: 434 GRVKDVIIMAGRNIYPTDIERAA-ARVEGVRPGNAVAVRLDA------------GHSREG 480
Query: 970 LVVIAEVRDGKPVDKDVIENIKT----RVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
V E + D + I+ VV E GV +V ++ P ++ KT SGK++R
Sbjct: 481 FAVAVESNAFE--DPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRR 536
|
Length = 545 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 7e-67
Identities = 113/401 (28%), Positives = 174/401 (43%), Gaps = 77/401 (19%)
Query: 636 DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695
D F+ +TSG+TG KGV+++H L+ N + + + T VL+S LP +H +G GL
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRS 755
A++ G T +L+ F PL +LE + +YR T G ++ + + E
Sbjct: 61 LGALLAGGTVVLYEGFPF---PLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRG----- 112
Query: 756 FDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ--- 812
+DLSS++ L+ EP+ ++RF E + GYGL E V S
Sbjct: 113 YDLSSLRLLISGGEPLSPELLERFEERPGA------PILEGYGLTETSVVTSTNPDSELK 166
Query: 813 -----GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI 867
G+P+ P V++R+V+ E PG+ GE+ + P
Sbjct: 167 KPGTVGRPV-----------------PGVEVRVVDEEGKPL--PPGEVGELVVRGPWVMK 207
Query: 868 GYWGR-EELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYS 925
GYW E + + + RTGDLG + +G +ITGR KDLI V G NVY
Sbjct: 208 GYWNNPPETTAAATEDG--------WYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYP 259
Query: 926 ADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD 983
A+VE + P AV+GVP+E D +++ V +R G
Sbjct: 260 AEVESVLLQH-----PAVAEAAVVGVPDE----------DRGERIVAFV--VLRPGADAL 302
Query: 984 KDVIENIKTRVVEE--HGVTVASVKLIKPRTMSKTTSGKIK 1022
E +K + E ++ + + KT SGKI
Sbjct: 303 ---AEELKAHLRERLAPYKVPRVIEFVD--ELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 2e-60
Identities = 145/543 (26%), Positives = 224/543 (41%), Gaps = 127/543 (23%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY ELD + R A L +K GDRV L+ F A+FG ++A + VPV P
Sbjct: 26 TYAELDELSDRFAAYLQQLG---VKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNP- 81
Query: 564 DPLQRGGQALLK---IENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
L +E+ GA ++ I + A+ G+ LP
Sbjct: 82 ---------LYTPRELEHQLNDSGAKVLIVAISFEDALASGAPLPLP------------- 119
Query: 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS--TSKTV 678
E PDDL LQ+T G+TG KG M+TH L+ NV+ + K +
Sbjct: 120 ---------VELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDR 170
Query: 679 LVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGP 735
++ LP +H GL + + G+T +L F P+ +K + +YR T G
Sbjct: 171 FLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLK-------EIKRYRFTIFPGV 223
Query: 736 NFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ ++ E + +D SS++ + P+ +RF E T +
Sbjct: 224 PTLYNALLNHPE-----FKKYDFSSLRLCISGGAPLPVEVAERFEEKTG------APLVE 272
Query: 796 GYGLAENCVFVSCA---YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852
GYGL E V+ G+ KP G + P +++IV+ E +E P
Sbjct: 273 GYGLTE-TSPVTTVNPLDGERKP-----------GSIGLPLPGTEVKIVDDEGNEL--PP 318
Query: 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGR 911
G+ GE+ + P GYW R E + + G + RTGD+G + DG F+I R
Sbjct: 319 GEVGELVVRGPQVMKGYWNRPEETAEVLTD------G--WLRTGDIGYMDEDGYFYIVDR 370
Query: 912 IKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVG 969
KD+IIV G NVY ++E+ + H P AV+GVP+ G
Sbjct: 371 KKDMIIVGGFNVYPREIEEVL---YSH--PAVLEAAVVGVPDPYR--------------G 411
Query: 970 LVVIAEV--RDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGK 1020
V A V ++G + +++I + R +A+ K+ PR + K+ GK
Sbjct: 412 EAVKAFVVLKEGASLTEEELIAFCRER--------LAAYKV--PRQVEFRDELPKSAVGK 461
Query: 1021 IKR 1023
I R
Sbjct: 462 ILR 464
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 2e-53
Identities = 149/585 (25%), Positives = 240/585 (41%), Gaps = 74/585 (12%)
Query: 494 NEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRA 553
+ G + TY +L + A++IA+ LL K IKPGDRV+LVY DF+ AF+GC+ A
Sbjct: 1 DGNGKPLYTLTYGKLWSRAAKIAYALLK--KLGIKPGDRVVLVYPDPEDFIAAFYGCLYA 58
Query: 554 KVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR---------VGSWP 604
++PVPV PP Q + +I CG L++ +R WP
Sbjct: 59 GLIPVPVEPPLSRAGSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKFKGWP 118
Query: 605 NLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNV 664
L W T+ K K + + D ++++ + G GV +TH L+ +
Sbjct: 119 RLVWFVTEI--KTLKKPIKDWNP-HLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLTHC 175
Query: 665 KLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETM 724
+ +++ + T +V+ L +G G T+++ G IL P NPLLW + +
Sbjct: 176 QALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQII 235
Query: 725 SKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAE--PVRQTTVKRFVEL 782
SKY+ + + L + +D+ + +LS ++ L+VA P + + F+ +
Sbjct: 236 SKYKIKDTL---VKSRDLHWALNAHRDQ-KDINLSCLRMLIVADGARPWSLASCQAFLNV 291
Query: 783 TRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKP--IILDWQ----GRVCCGYVDQND--- 833
+ GLS + N + Y P +LD G V D+
Sbjct: 292 FQSKGLSPCASSTEASTVANRRIGTRGYSGPIPGRGVLDMAALRHGVVRVDSEDKPSSLP 351
Query: 834 --------PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQ 885
P + IVNP+T + GE+W++S + Y+G +++ TF
Sbjct: 352 LQDSGMVMPGAQMCIVNPDTPPLCRT-DEIGEIWVNSSANATSYYGLTGMTKNTFEV--F 408
Query: 886 NNRGRK------YTRTGDLG-----------RIIDGKFFITGRIKDLIIVAGRNVYSADV 928
N Y RTG LG + G F+ G I + + V+G D+
Sbjct: 409 PNSSSDGIGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSGLRHNPDDI 468
Query: 929 EKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIE 988
E TV I G AV V E V VV+AE R + +
Sbjct: 469 EATVLRVHPMIYRGRIAVFSVTERV-----------------VVVAEQRGSEEESFQWVP 511
Query: 989 NIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033
+ ++ EH V V V L+ P T+ KT G+ +R E F++G
Sbjct: 512 RVLNAILSEHQVIVYVVALVPPGTLPKTPLGEKQRSETRASFLEG 556
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 6e-53
Identities = 147/542 (27%), Positives = 228/542 (42%), Gaps = 63/542 (11%)
Query: 505 YEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRA----KVLPVPV 560
+ E+ A +A +LL +P V LV P ++ V A G A +LP PV
Sbjct: 34 WPEVHGRAENVAARLLDRDRPGA-----VGLVGEPTVELVAAIQGAWLAGAAVSILPGPV 88
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
D + L + I G +LS + +R ++ +H + +
Sbjct: 89 RGADDGRWADATLTRFAGI----GVRTVLSHGSHLERLRAVD-SSVT-VHDLATAAH--- 139
Query: 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKT-VL 679
T LQ T+GSTG + +++ G ++ N++ + R + T V
Sbjct: 140 --TNRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVG 197
Query: 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAF 739
SWLP YHDMGL L TA + G+ L F +P WL +S RAT +A PNFA+
Sbjct: 198 CSWLPLYHDMGLAF-LLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAY 256
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799
L+ + +V DL +++ + EPV +RF PFG G AP YGL
Sbjct: 257 NLIGKY----ARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGL 312
Query: 800 AE-NCVFVSCAYGQG----KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
AE C G G + D G + P +++RI + + +
Sbjct: 313 AESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREI 372
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKD 914
GE+ I S GY G+ + + TGDLG ++DG + GR K+
Sbjct: 373 -GEIEIRGASMMSGYLGQAPI------------DPDDWFPTGDLGYLVDGGLVVCGRAKE 419
Query: 915 LIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIA 974
LI VAGRN++ ++E+ V + +R G +G E GS + GLV+ A
Sbjct: 420 LITVAGRNIFPTEIER-VAAQVRGVREGAVVAVGTGE------------GSARPGLVIAA 466
Query: 975 EVR--DGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032
E R D +V++ RV E GV + V + P ++ +T+SGK++R +
Sbjct: 467 EFRGPDEAGARSEVVQ----RVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA 522
Query: 1033 GT 1034
Sbjct: 523 AD 524
|
Length = 525 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 1e-50
Identities = 139/532 (26%), Positives = 219/532 (41%), Gaps = 119/532 (22%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG-LDFVDAFFGCMRAKVLPVPVLP 562
TY EL R+A L K V + GDRV +Y+ FV A++ +RA + VPV
Sbjct: 3 TYAELLELVDRLAGLL--QEKGV-RKGDRVA-LYMQNSPQFVIAYYAILRAGAVVVPV-- 56
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLL 622
+P+ R + +E+I GA ++
Sbjct: 57 -NPMNREAE----LEHILNDSGARVLIVG------------------------------- 80
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
S+ DD+ + +TSG+TG KG M TH ++ T +VL+++
Sbjct: 81 ---------SELDDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAF 131
Query: 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFEL 741
LP +H G+ G + + G+T +L + + + +YR TH +L
Sbjct: 132 LPLFHVAGMQGSMNAPIYTGATLVLLT----RWDREAAARAIERYRVTHWTNIVTMVVDL 187
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA-PGYGLA 800
+ + + +DLSS+K + + +R LT G++ GYGL
Sbjct: 188 L------AHPRFADYDLSSLKVVGGGGAALPPAVAERLKALT-------GLLYEEGYGLT 234
Query: 801 EN--CVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEV 858
E C + + KP C G D R+++PET EE+ PG+EGE+
Sbjct: 235 ETHTCTHFNPPD-RPKPQ--------CLGI---PVFGTDARVIDPETGEELP-PGEEGEI 281
Query: 859 WISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLII 917
+ P GYW R E + +F G+++ RTGDLG I +G FF R+K +I
Sbjct: 282 VVRGPQVFKGYWNRPEATAESFIEL----DGKRFFRTGDLGYIDEEGYFFFLDRVKRMIN 337
Query: 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR 977
V+G V+ A+VE + +H VIG P+ +G V VV+
Sbjct: 338 VSGYKVWPAEVEALL---YQHPAVLEVCVIGRPDP---RRGEVV------KAFVVLKPDY 385
Query: 978 DGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRT------MSKTTSGKIKR 1023
GK ++D+IE + R +A+ K PR + KT SGK+
Sbjct: 386 RGKVTEEDIIEWCRER--------MAAYK--YPRIIEFVDELPKTASGKVLW 427
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 1e-47
Identities = 111/407 (27%), Positives = 172/407 (42%), Gaps = 77/407 (18%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
PDD +Q+TSG+TG KG M+TH +++N + +R T + +P +H GL+
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV 753
G+ ++ G+T +L F +P L + + R T M L D
Sbjct: 61 GVLASLTAGATLVLMEK--F--DPGAALRLIERERITAL----HGVPTMFIALLEHPDF- 111
Query: 754 RSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG 813
FDLSS++ + PV V+R E + GYG+ E V
Sbjct: 112 DKFDLSSLRTGISGGAPVPPELVRRIREE-----FPMAEITTGYGMTETSG-VGTQTSGD 165
Query: 814 KPIIL--DWQGRVCCGYVDQNDPDVDIRIVNPETSE-EIGEPGKEGEVWISSPSAGIGYW 870
P GR P V+++IV+P+ E GE GE+ + S GY+
Sbjct: 166 DPYEDRPGTVGRPL--------PGVEVKIVDPDGGEVPPGEV---GEICVRGYSVMKGYY 214
Query: 871 GREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVE 929
E + + + TGDLG + DG I GRIKD+II G N+Y A++E
Sbjct: 215 NDPEATAEAIDAD-------GWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIE 267
Query: 930 KTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIA--EVRDGKPVD-K 984
+ + H P AV+GVP+E L G VV A ++ G + +
Sbjct: 268 EAL---LTH--PAVAEAAVVGVPDERL--------------GEVVAAFVVLKPGATLTEE 308
Query: 985 DVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGKIKRFE 1025
++I + R +A K+ PR + +T SGKI++F+
Sbjct: 309 ELIAFCRGR--------LARFKV--PRYVRFVDELPRTASGKIQKFK 345
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-43
Identities = 110/405 (27%), Positives = 170/405 (41%), Gaps = 82/405 (20%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694
DD + +TSG+TG KGVM+TH L+ N + V + P YH
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYH-AAGGLF 59
Query: 695 LFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKD 751
L A+ G T +L F P L+ + ++R TH+ F+ ++R +
Sbjct: 60 LLPALAAGGTVVLMPKFDPEAV-------LDLIERHRVTHTFLVPTMFQRLLRLPD---- 108
Query: 752 KVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYG 811
+DLSS++ ++ A P+ +KR + QG YG+ E +
Sbjct: 109 -FARYDLSSLRLIIYGAAPMP-AELKRAMIEWFGPVFVQG-----YGMTETGPTTTLLSP 161
Query: 812 QGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWG 871
+ L GR P V++RIV+ + E+ PG+ GE+ + P+ GYW
Sbjct: 162 EDWLRKLGSVGRPV--------PGVEVRIVDEDG-RELP-PGEVGEIVVRGPAVMAGYWN 211
Query: 872 REELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEK 930
R E + R+ + TGDLG + DG +I R KD+II G N+Y A+VE
Sbjct: 212 RPEATAEALRDG--------WLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVEN 263
Query: 931 TVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV--RDGKPVD-KD 985
+ H P AVIGVP ++ G V+A V R G +D ++
Sbjct: 264 VLL---AH--PAVADVAVIGVP--------------DEEWGEAVVAVVVLRPGATLDAEE 304
Query: 986 VIENIKTRVVEEHGVTVASVKLIKPRT------MSKTTSGKI-KR 1023
+I + R +A K P++ + + SGKI KR
Sbjct: 305 LIAFCRER--------LAGYK--VPKSVEFVDELPRNASGKILKR 339
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 5e-42
Identities = 135/484 (27%), Positives = 208/484 (42%), Gaps = 80/484 (16%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP- 562
+Y EL A R+A L ++ ++ GDRVLL FV A++ +RA + VPV P
Sbjct: 37 SYRELLEEAERLAGYL--QQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPM 94
Query: 563 ----------PDPLQRG---GQALLKIENISKSCGAVAILSTI-----GY---HSAVRVG 601
D R G L ++ + G + + I Y + V
Sbjct: 95 NREEELAHYVTDSGARVAIVGSELA--PKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVP 152
Query: 602 SW----PNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITH 657
+W P L L V + L A + PDDL L +TSG+TG KG M TH
Sbjct: 153 AWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTH 212
Query: 658 GGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNP 717
++ N ST ++V+++ LP +H G++ + + G+T +L
Sbjct: 213 RTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMP-------- 264
Query: 718 LLW-----LETMSKYRATH-SAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPV 771
W + +YR TH + P + + + + DLSS++++ +
Sbjct: 265 -RWDREAAARLIERYRVTHWTNIPTMVVDFL------ASPGLAERDLSSLRYIGGGGAAM 317
Query: 772 RQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQ 831
+ +R EL GL GYGL E + A P D C G
Sbjct: 318 PEAVAERLKEL---TGLD---YVEGYGLTE-----TMAQTHSNP--PDRPKLQCLGIPTF 364
Query: 832 NDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRK 891
VD R+++PET EE+ PG+ GE+ + P GYW R E + F E+ G++
Sbjct: 365 ---GVDARVIDPETLEELP-PGEVGEIVVHGPQVFKGYWNRPEATAEAFI-EID---GKR 416
Query: 892 YTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH--IRPGCCAVIG 948
+ RTGDLGR+ +G FFIT R+K +I +G V+ A+VE + +H I+ C VI
Sbjct: 417 FFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLL---YKHPAIQEAC--VIA 471
Query: 949 VPEE 952
P+
Sbjct: 472 TPDP 475
|
Length = 546 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-41
Identities = 127/548 (23%), Positives = 217/548 (39%), Gaps = 103/548 (18%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPV----P 559
T+ +L A R+A L RK +K GD V L+ ++F F GC+ A V P
Sbjct: 12 TFADLLKKALRLAKGL---RKLGLKQGDVVALISPNSIEFPPVFLGCLAAG-GIVSAANP 67
Query: 560 VLPPDPLQR------------GGQALLKIENISKSCGA---VAILSTIGYHSAVRVGSWP 604
PD L L K++ +K G + +L + +R+
Sbjct: 68 SYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAP-DGVLRIEDLL 126
Query: 605 NLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNV 664
D + DD L ++SG+TG KGVM++H +I N+
Sbjct: 127 EPRLGAEDEFRPTPLIDG-----------KDDTAALLYSSGTTGLPKGVMLSHKNIIANL 175
Query: 665 KLMRKRYK---STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWL 721
++ K +S V++++LP YH GL +++ G+T I+ F + +L
Sbjct: 176 SQVQDTLKGNPDSSNDVVLTFLPFYHAYGLT-TTLASLLCGATVIIMP--KF--DSETFL 230
Query: 722 ETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781
+ + KY+ T + V +S V +DLSS++ + A P+ + + +
Sbjct: 231 KLIEKYKVTSL---FLVPPIAVALAKSP--LVDKYDLSSLRVIFSGAAPLSKELQEELRK 285
Query: 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIV 841
+ Q GYG+ E + G G V + P+V+ +IV
Sbjct: 286 RFPNTTIKQ-----GYGMTE-TGPATTLTPPGDEKP---------GSVGRLVPNVEAKIV 330
Query: 842 NPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI 901
+ + + +G P + GE+ + P GY E ++ T ++ + TGD+G
Sbjct: 331 DEDGGKSLG-PNERGELCVKGPQIMKGYLNNPEATKETI---DEDG----WLHTGDIGYF 382
Query: 902 -IDGKFFITGRIKDLIIVAGRNVYSADVE-------KTVESSTEHIRPGCCAVIGVPEEV 953
DG F+I R K+LI G V A++E K + AVIG+P+EV
Sbjct: 383 DEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVAD----------AAVIGIPDEV 432
Query: 954 LSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTM 1013
G VV+ K +++V + + +V ++ V + +
Sbjct: 433 ---------AGELPRAYVVLK--PGSKLTEQEVKDYVAKKVA-KYKQLRGGVVFVD--EI 478
Query: 1014 SKTTSGKI 1021
K+ SGKI
Sbjct: 479 PKSPSGKI 486
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 5e-40
Identities = 130/529 (24%), Positives = 212/529 (40%), Gaps = 104/529 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLP 562
TY ELD A R+A L ++PGD V +P +FV + C R + P++
Sbjct: 3 TYGELDDAADRLAAALAELG---VRPGDVVA-FQLPNWWEFVVVYLACARIGAVINPIV- 57
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLL 622
P+ R + IL + RV P+ +
Sbjct: 58 --PIYREREL-------------GFILR----QARARVLFVPDEFR---------GFDYA 89
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
A PDD+ L +TSG+TG+ KGVM TH L+ V+ +R T V++
Sbjct: 90 A---------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMP 140
Query: 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFEL 741
P H G + GL ++ G+T +L +P LE + ++ T + G F +L
Sbjct: 141 SPLAHITGFLYGLELPLLLGATVVLQD----RWDPARALELIREHGVTFTMGATPFLADL 196
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801
+ +++ DL S++ + PV + +R E G + YG+ E
Sbjct: 197 L-AAADAAGP-----DLPSLRVFLCGGAPVPRELARRAAEA---LGA---KVVRAYGMTE 244
Query: 802 NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861
+ GR P V++RIV+ + ++ PG+EGE+ +
Sbjct: 245 VPLVTVGTPDDPDDKRAATDGRPV--------PGVEVRIVDDDGNDV--PPGEEGELQVR 294
Query: 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAG 920
P +GY + ++ + G + RTGDLGR+ DG ITGR KD+II G
Sbjct: 295 GPQLFLGYLDPPDNTEAFTDD------G--WFRTGDLGRLDADGYLRITGRKKDIIIRGG 346
Query: 921 RNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK 980
N+ + ++E + H AV+ +P+E L + V VV+ G
Sbjct: 347 ENISAREIE---DLLLRHPAVAEVAVVAMPDERLGER----------VCAVVV--PAPGA 391
Query: 981 PVDKDVIENIKTRVVEEHGVTVASVK----LIKPRTMSKTTSGKIKRFE 1025
+ + T + G +A K L + +T SGK+++FE
Sbjct: 392 SLTLAEL----TEHLAAQG--LAKQKWPERLEVVDALPRTPSGKVQKFE 434
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-39
Identities = 126/567 (22%), Positives = 216/567 (38%), Gaps = 116/567 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY ELD +R+A+ L +K GDRV + ++++A+F + + P+
Sbjct: 33 TYAELDERVNRLANALRALG---VKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIR 89
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAI----------------LSTIGYHSAVRVGSWP 604
L P+ +I I + L T+ + + G P
Sbjct: 90 LKPE----------EIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTV--RTVIVEGDGP 137
Query: 605 NLP----WLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL 660
P + + A + F + +D + +TSG+TG KGV+++H L
Sbjct: 138 AAPLAPEVGEYEELLAA-----ASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNL 192
Query: 661 IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLW 720
+ + K + V + +P +H M G I F L
Sbjct: 193 FLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRR---FDPENL-- 247
Query: 721 LETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780
L+ + R T ++++++ + D SS++ ++ + ++ F
Sbjct: 248 LDLIETERVTFFFAVPTIWQMLLKAPRA-----YFVDFSSLRLVIYGGAALPPALLREFK 302
Query: 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAY-----GQGKPIILDWQGRVCCGYVDQNDPD 835
E FG+ + GYG+ E VS GR G
Sbjct: 303 EK---FGID---LVQGYGMTETSPVVSVLPPEDQLPGQWTKRRS-AGRPLPG-------- 347
Query: 836 VDIRIVNPETSEEIGEPGKE-GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTR 894
V+ RIV+ + +E+ G E GE+ + P GYW R E + T +
Sbjct: 348 VEARIVDDDG-DELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGG--------WLH 398
Query: 895 TGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEV 953
TGD+G I DG +IT RIKD+II G N+Y ++E + + AVIGVP+E
Sbjct: 399 TGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDAL-YGHPAVAE--VAVIGVPDE- 454
Query: 954 LSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPR- 1011
G V +VV ++ G +D K++ ++ R +A KL P+
Sbjct: 455 --------KWGERPVAVVV---LKPGATLDAKELRAFLRGR--------LAKFKL--PKR 493
Query: 1012 -----TMSKTTSGKIKRFECLKQFVDG 1033
+ +T+ GKI + +Q+ +G
Sbjct: 494 IAFVDELPRTSVGKILKRVLREQYAEG 520
|
Length = 521 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 8e-38
Identities = 119/459 (25%), Positives = 179/459 (38%), Gaps = 57/459 (12%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMR--AKVLPV-PV 560
TY EL+ R+A L + GD VLL+ L+F F + A V P+
Sbjct: 34 TYAELERLVRRLAAGL---AARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPL 90
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPN---LPWLHTDSWVKN 617
P + + Q K GA ++T + + L S +
Sbjct: 91 YTPAEIAK--QV--------KDSGAKLAITTSELAEKLASLALEPVVLLDSADDGSAAID 140
Query: 618 SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL--MRKRYKSTS 675
E + DD+ L ++SG+TG +KGVM+TH LI NV +
Sbjct: 141 DLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDR 200
Query: 676 KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH-SAG 734
+ V + LP +H GL L + G+T ++ K +L + KY+ TH
Sbjct: 201 EDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEK----FLAAIEKYKVTHLPVV 256
Query: 735 PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
P L V +DLSS+K + A P+ + + F F +
Sbjct: 257 PPIVLAL------VKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFR---ARFPGVELGQ- 306
Query: 795 PGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
GYG+ E+ + K GR+ P+V+ +IV+PET E + P +
Sbjct: 307 -GYGMTESSPVTTMCPVPEKDPKPGSVGRLV--------PNVEAKIVDPETGESLP-PNQ 356
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIK 913
GE+W+ P GY E + T + + TGDLG DG FI R+K
Sbjct: 357 PGELWVRGPQVMKGYLNNPEATAETIDKD-------GWLHTGDLGYFDEDGYLFIVDRLK 409
Query: 914 DLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
+LI G V A++E + S E AVI P+E
Sbjct: 410 ELIKYKGFQVAPAELEALLLSHPEIAD---AAVIPYPDE 445
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-37
Identities = 119/496 (23%), Positives = 185/496 (37%), Gaps = 131/496 (26%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY ELDA + R+A LL + PGDRV ++ ++V + RA
Sbjct: 13 TYGELDARSGRLAKALLAL---GLLPGDRVAVLAPKSAEYVVLYLAIWRA---------- 59
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
G VA+ N A
Sbjct: 60 --------------------GGVAVPL--------------------------NPSYPAA 73
Query: 624 ENVVCFTESQPD---DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLV 680
E ++SQP D + +TSG+TG KGV++THG L N + + + ++ T+ VL+
Sbjct: 74 ELAYILSDSQPSLLVDPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLL 133
Query: 681 SWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNF 737
LP +H GL L + G++ F P + R
Sbjct: 134 HALPLHHVHGLFNALHCPLWAGASVEFLPRFDP-----------QERDALRLLPRITVFM 182
Query: 738 AFELMVRRL--ESSKDKVRSFDLSSMKFLMV---AAEPVRQTTVKRFVELTRPFGLSQGV 792
+ RL D + +++ L V AA PV ++R+ E T L +
Sbjct: 183 GVPTIYTRLLEHYEFDDAAAAAARNLR-LFVSGSAALPV--PVLERWEERTGHTLLER-- 237
Query: 793 MAPGYGLAENCVFVSCAY-GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGE 851
YG+ E + +S G+ +P G V P V++RIV+ + E
Sbjct: 238 ----YGMTETGMALSNPLDGERRP-----------GTVGLPLPGVEVRIVDEDG-GEPLA 281
Query: 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITG 910
G+ GE+ + P+ YW + E + F + +TGD+G + DG + I G
Sbjct: 282 AGEVGEIQVRGPNVFSEYWNKPEATAEAF-------TEDGWFKTGDVGVVDEDGYYRILG 334
Query: 911 RIKDLII-VAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQ 967
R D II G V + ++E+ + EH PG AVIGVP+ D +
Sbjct: 335 RKSDDIIKSGGYKVSALEIEEALL---EH--PGVAEVAVIGVPDP----------DWGEA 379
Query: 968 VGLVVIAEVRDGKPVD 983
V VV+ G +
Sbjct: 380 VVAVVVP--EAGAALT 393
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-36
Identities = 126/587 (21%), Positives = 213/587 (36%), Gaps = 127/587 (21%)
Query: 486 KKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG-LDFV 544
T + E+G+ TY +L +R+A+ L + GDRV + Y+P + V
Sbjct: 25 DDTAIIFDGEDGLFREL-TYGDLRREVARLANAL---KDLGGVKGDRVAI-YMPNSPEAV 79
Query: 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALL-KIENISKSCGAVAILSTIGYHSAVRVGSW 603
A R +P V P +A+ +I + G +++ G +
Sbjct: 80 IALLATARIGAIPAVVSP----GLSAEAVADRIAD----LGPKVLIADDGTFRNGKE--- 128
Query: 604 PNLPWLHTDSWVKNSKNLLAENVV-------------------CFTESQPDDLCFLQFTS 644
L +++ +L+ VV F DD FL +TS
Sbjct: 129 IALL--------EDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTS 180
Query: 645 GSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK------TVLVSWLPQYHDMGLIGGLFTA 698
G+TG KG++ +HGG + +L K + + W+ GL +F+
Sbjct: 181 GTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWI-----YGLWYSVFSP 235
Query: 699 MVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDL 758
+ G+T +L+ +P E + KY+ T ++ +DL
Sbjct: 236 LASGATTVLY-DGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLM-----KLGLGEPYDL 289
Query: 759 SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENC-VFVSCAY-----GQ 812
SS++ L A EP+ + F + YG E F++
Sbjct: 290 SSLRVLGSAGEPLNPEAFEWFYSALGV------WILDIYGQTETGMGFIAGRPPVKNGSS 343
Query: 813 GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI--SSPSAGIGYW 870
G P+ P +R V+ E + P GE+ + P + YW
Sbjct: 344 GLPL-----------------PGYAVRRVDDEGNPV---PPGVGELVVRLPWPGMALTYW 383
Query: 871 GREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVE 929
E + + ++ RTGD DG F++ GR D+I V+G+ + ++E
Sbjct: 384 NDPERYKEAYFG--------RWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIE 435
Query: 930 KTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVI 987
+ + H P AV+GVP+ KG V + VV + G + ++
Sbjct: 436 SVLLA---H--PAVAEAAVVGVPDPG---KGQIV------LAFVV---LAAGVEPN-ELA 477
Query: 988 ENIKTRVVEEHGVTVASVKLIKPR-TMSKTTSGKIKRFECLKQFVDG 1033
E I+ V G A + I+ + KT SGKI+R K G
Sbjct: 478 EEIRRHVARNIG-PHAIPRKIRFVDELPKTASGKIQRRLLRKILHKG 523
|
Length = 528 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 3e-36
Identities = 129/524 (24%), Positives = 206/524 (39%), Gaps = 101/524 (19%)
Query: 477 HWGTHRITQKKTLFTWI--NEEGVAV----NQSTYEELDANASRIAHKLLTSRKPVIKPG 530
+WG + L + + AV + TY ELDA R+A LL I PG
Sbjct: 11 YWGDQTLGDL--LAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLL---ALGIGPG 65
Query: 531 DRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILS 590
DRVL+ +FV +F + +PV LP +I + ++ A A +
Sbjct: 66 DRVLVQLPNVAEFVILYFALFKLGAIPVLALP-------AHRAHEIGHFARQSEAKAYII 118
Query: 591 TIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDA 650
+ LA ++ E PD + Q + G+TG
Sbjct: 119 ADRFSGFDYAA--------------------LARELL---EELPD-VALFQLSGGTTGLP 154
Query: 651 KGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG-GLFTAMVGGSTAILFS 709
K + TH +++ + + TV ++ LP H+ L GL A++ G T +L
Sbjct: 155 KLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHH 214
Query: 710 PLTFIKNPLLWLETMSKYRATH-SAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAA 768
P + P + + + + TH + P L+ LE++ + DLSS++ + V
Sbjct: 215 PPS----PDVAFPLIEREKVTHTALVP----ALLNLWLEAA--EWDQADLSSLRVIQVGG 264
Query: 769 EPVRQTTVKRFVELTRPFG--LSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCC 826
P+ +R E G L Q +G+AE V + +I+ QGR
Sbjct: 265 APLSPELARRVEER---LGCPLQQ-----VFGMAEGLVNYT-RLDDPPDVIMRTQGRPIS 315
Query: 827 GYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQN 886
P +IRIV+ + E PG+ GE+ P GY+ E + F ++
Sbjct: 316 -------PADEIRIVDDQG--EPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDD--- 363
Query: 887 NRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC-- 943
G + RTGDL RI DG + + GRIKD I G + ++E + S H P
Sbjct: 364 --G--FYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLS---H--PAVAD 414
Query: 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVI 987
AV+G+P+EVL + + V+ R G +
Sbjct: 415 AAVVGMPDEVLGER----------ICAFVVP--RGGAAPTLAEL 446
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 6e-36
Identities = 128/539 (23%), Positives = 203/539 (37%), Gaps = 141/539 (26%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY EL +R+A LL ++PGDRV L+ +F+ A+F + + VP+
Sbjct: 5 TYAELAERVNRLAAGLLALG---VRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPI--- 58
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
+ RG + + +I GA I+
Sbjct: 59 NTALRGEE----LAHILDHSGARLIVV--------------------------------- 81
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
D + +TSG+TG KGV++TH L+ +L + VL++ L
Sbjct: 82 ------------DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPL 129
Query: 684 PQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRAT--HSAGPNFA 738
P +H ++ A++ G+T +L FS F W + + K+ AT + G
Sbjct: 130 PLFHINAQAYSVYAALLVGATLVLLPRFSASRF------W-DQVRKHGATVFNLLGA--- 179
Query: 739 FELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYG 798
M L D V P+ F E R FG+ + GYG
Sbjct: 180 ---MAAILMKQPPSPDDRD---HPLRFVFGAPLPAAIWPAFEE--R-FGV---KLVEGYG 227
Query: 799 LAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE-EIGEPGKEGE 857
+ E V + P G CG P V++RIV+ + E GE G E
Sbjct: 228 MTETGVPIIAPGDPAPP------G--SCGRPR---PGVEVRIVDEDGREVPPGEVG---E 273
Query: 858 VWISSPSAGI---GYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIK 913
+ + GY+G E + +RN + TGD GR DG + R K
Sbjct: 274 LVVRPRRPWAMFKGYYGMPEATAKAWRNG--------WFHTGDRGRRDEDGFLYFVDRKK 325
Query: 914 DLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVI 973
D I G N+ S +VE + + + AV+ VP E+ G D+V VV+
Sbjct: 326 DAIRRRGENISSYEVEAAILAH-PAVAE--AAVVAVPSEL----------GEDEVKAVVV 372
Query: 974 AEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGKIKRFE 1025
+R G+ +D + ++E + R + + PR + KT + KI++ E
Sbjct: 373 --LRPGETLDPEALLEFCRDR--------LPYFMV--PRYIEFVDELPKTPTEKIQKAE 419
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-35
Identities = 94/416 (22%), Positives = 156/416 (37%), Gaps = 45/416 (10%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLP 562
TY ELD A+R+A L + + PGDRV V + + V A ++A VP+ P
Sbjct: 1 TYRELDERANRLARHLRAAGG--VGPGDRVA-VLLERSAELVVAILAVLKAGAAYVPLDP 57
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLL 622
P +R + I + GA +L+ A R+ L + +
Sbjct: 58 AYPAER-------LAFILEDAGARLLLTDSAL--ASRLAGLVLPVILLDPLELAALDDAP 108
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
A S PDDL ++ +TSGSTG KGV++TH L++ + + +RY ++ +
Sbjct: 109 APPPPD-APSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQF 167
Query: 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELM 742
D + + G + + L ++++ T L+
Sbjct: 168 ASLSFDASVEEIFGALLAGATLVVPPEDEERDD-AALLAALIAEHPVTVLNLTPSLLALL 226
Query: 743 VRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAEN 802
L L+S++ +++ E + V R+ + YG E
Sbjct: 227 AAALP--------PALASLRLVILGGEALTPALVDRWRAR-----GPGARLINLYGPTET 273
Query: 803 CVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP---GKEGEVW 859
V+ + P + V G N + +++ + P G GE++
Sbjct: 274 TVWSTATLVD--PDDAPRESPVPIGRPLAN---TRLYVLDDD-----LRPVPVGVVGELY 323
Query: 860 ISSPSAGIGYWGREELSQITFRNE--LQNNRGRKYTRTGDLGRII-DGKFFITGRI 912
I P GY R EL+ F + + R Y RTGDL R + DG GRI
Sbjct: 324 IGGPGVARGYLNRPELTAERFVPDPFAGGDGARLY-RTGDLVRYLPDGNLEFLGRI 378
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 1e-33
Identities = 101/456 (22%), Positives = 171/456 (37%), Gaps = 106/456 (23%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ EL R+A L +KPGDRV ++ ++V A + A +PVP+ P
Sbjct: 7 TWAELAERVRRLAAGL---IALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
+ + I GA
Sbjct: 64 SSPEE-------VAYILNDSGAR------------------------------------- 79
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
V F E +PDDL L +TSG+TG+ KGVM+TH L+ + + + ++S+L
Sbjct: 80 ---VVFVEDKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFL 136
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMV 743
P H G + + G+ + F ++P LE + + R T +E +
Sbjct: 137 PLAHVFEQRLGEYLPLSSGAR------VNFAESPETLLEDLREVRPTVFFAVPRVWEKIY 190
Query: 744 RRL-----ESSKDKVRSFD----LSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
+ + K + F ++F + P+ ++ F R G+ +
Sbjct: 191 AGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF----RALGI---PIL 243
Query: 795 PGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
GYGL E + + I + G+ P V++RI
Sbjct: 244 EGYGLTETSGVATV--NRPGDIRIGTVGKPL--------PGVEVRIAE------------ 281
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIK 913
+GE+ + P+ GY+ E + + + TGD+GR+ DG IT R K
Sbjct: 282 DGEILVRGPNVMKGYYKNPEATAEALDED-------GWLHTGDIGRLDEDGFLVITDRKK 334
Query: 914 DLIIVA-GRNVYSADVEKTVESSTEHIRPGCCAVIG 948
DLI+ A G+N+ +E +++S +I V+G
Sbjct: 335 DLIVTAGGKNIAPQPIENALKAS-PYISQ--AVVVG 367
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 7e-33
Identities = 121/406 (29%), Positives = 184/406 (45%), Gaps = 75/406 (18%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR---KRYKSTSKTVLVSWLPQYHDMG 690
PDD+ + +TSG+TG KG +TH L N + + VL + LP +H G
Sbjct: 218 PDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAA-LPMFHAYG 276
Query: 691 L-IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVRRLES 748
L + +GG +L +P L+ L+ M K+ T G P L + E+
Sbjct: 277 LTLCLTLAVSIGGELVLLPAP----DIDLI-LDAMKKHPPTWLPGVPP----LYEKIAEA 327
Query: 749 SKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC 808
+++ R DLS ++ A + +TV+ + +LT G++ GYGL E +
Sbjct: 328 AEE--RGVDLSGVRNAFSGAMALPVSTVELWEKLT------GGLLVEGYGLTETSPIIV- 378
Query: 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
G P+ D + GYV PD ++RIV+PE +E G+EGE+ + P G
Sbjct: 379 ----GNPMSDDRRP----GYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKG 430
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSAD 927
YW R E + +F + + RTGD+ + DG I RIK+LII G NVY A+
Sbjct: 431 YWNRPEETAKSFLDG--------WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAE 482
Query: 928 VEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKD 985
VE+ + EH PG AV+G+P E DGS++V V+ E G +D
Sbjct: 483 VEEVLR---EH--PGVEDAAVVGLPRE----------DGSEEVVAAVVLE--PGAALDP- 524
Query: 986 VIENIKTRVVEEHGVTVASVKLIKPRT------MSKTTSGKIKRFE 1025
E ++ E +T V PR + + GK++R E
Sbjct: 525 --EGLRAYCREH--LTRYKV----PRRFYHVDELPRDQLGKVRRRE 562
|
Length = 573 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-32
Identities = 114/532 (21%), Positives = 195/532 (36%), Gaps = 119/532 (22%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY ELD A+++AH L++ ++PGD V L A ++A VP+ P
Sbjct: 19 TYAELDRRANKLAHHLISLG---VRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPS 75
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
P++R ++ I + GA +L+
Sbjct: 76 APVER-------LQFIIEDSGATVVLT--------------------------------- 95
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
S PDD ++ +TSGSTG KGV+ITH + + ++ ++ +
Sbjct: 96 --------SSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQFA 147
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH-SAGPNFAFELM 742
D+ I +FT ++ G T ++ +++ E +++ R T P+
Sbjct: 148 SIAFDVS-ILEIFTTLLAGGTLVIPPEELRLED---LAEFLNRLRVTVAHLTPSLLA--- 200
Query: 743 VRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAEN 802
+ D+ S++ L++ E Q V R+ + R YG E
Sbjct: 201 ---------LLDPEDVPSLRTLILGGEACPQALVDRWSKPRRLLN--------TYGPTEA 243
Query: 803 CVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862
V+ + P V G P+ +++P+ E + G GE+ I
Sbjct: 244 T--VTATASRLTP-----GKPVNIGRP---LPNYTCWVLDPDL-EPLVPIGAVGELCIGG 292
Query: 863 PSAGIGYWGREELSQITFRNE--LQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVA 919
P GY R EL+ F + NN G + RTGDL R + DG GR D + +
Sbjct: 293 PGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIR 352
Query: 920 GRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDG 979
G+ + ++E +R + V VL G V + + G
Sbjct: 353 GQRIELGEIE-------AVLR--ALPGVVVAAVVLLLDDP---GGKQLVAFLAVDGAAGG 400
Query: 980 KPVDKDVIENIKTRV--------VEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
+P D D+ +++ + V V + + P T SGK+ R
Sbjct: 401 EPADVDIAL-LRSALRERLPSYMVPSVYVPLDEL----PL----TASGKVDR 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 8e-32
Identities = 129/553 (23%), Positives = 204/553 (36%), Gaps = 110/553 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP- 562
TY EL+A R A L I GDRV + +V A G ++A + VP+
Sbjct: 32 TYAELNARVRRAAAALAALG---IGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTR 88
Query: 563 ------PDPLQRGGQALL--------KIENISKSCGAVAILSTIGYHSAVRVGSWPNLPW 608
L RG L + + A+ + +
Sbjct: 89 YTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTE-KMKTF 147
Query: 609 LHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR 668
++ V PDD+ + FTSG+TG KG M+TH L+ N
Sbjct: 148 ---TDFLAAGDPAERAPEV-----DPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWA 199
Query: 669 KRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMS 725
+ T ++ P +H G G+ ++ G+T + F P +
Sbjct: 200 EYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEV-------FRLIE 252
Query: 726 KYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMV--AAEPVRQTTVKRFVELT 783
R T GP M L D+ + DLSS++ + A+ PV ++RF
Sbjct: 253 TERITVLPGP----PTMYNSLLQHPDR-SAEDLSSLRLAVTGAASMPVA--LLERFESE- 304
Query: 784 RPFGLSQGVMAPGYGLAENCVFVS-CAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN 842
G+ ++ GYGL+E + + + G V+ +IVN
Sbjct: 305 --LGVD--IVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI--------AGVENKIVN 352
Query: 843 PETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI- 901
E G+ GE+ + P+ GY+ E + + + TGDLGR+
Sbjct: 353 ELGEEV--PVGEVGELLVRGPNVMKGYYDDPEATAAAIDAD-------GWLHTGDLGRLD 403
Query: 902 IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGI 959
+G +I R KD+ IV G NVY A+VE+ + EH P AVIGVP+E L
Sbjct: 404 EEGYLYIVDRKKDMFIVGGFNVYPAEVEEVL---YEH--PAVAEAAVIGVPDERL----- 453
Query: 960 SVSDGSDQVGLVVIAEV--RDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRT---- 1012
G V A V + G + +++I + +A K+ PR+
Sbjct: 454 ---------GEVGKAYVVLKPGAELTEEELIAYCREH--------LAKYKV--PRSIEFL 494
Query: 1013 --MSKTTSGKIKR 1023
+ K +GK+ +
Sbjct: 495 DELPKNATGKVLK 507
|
Length = 513 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 9e-32
Identities = 137/540 (25%), Positives = 220/540 (40%), Gaps = 87/540 (16%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY EL +R + L R+ I+ +RVLL+ + +F AF+G ++ +PVP+
Sbjct: 32 TYGELQEEVNRWGNAL---RELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTL 88
Query: 561 LPPDPLQ-----RGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWV 615
L PD + + L+ E + + H V G+ P
Sbjct: 89 LTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA----- 143
Query: 616 KNSKNLLAENVVCFT--ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-YK 672
L+A + DD+ F ++SGSTG KGV+ H ++ + K
Sbjct: 144 ----QLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG 199
Query: 673 STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHS 732
T V+ S + GL GL+ + G+T +L P T+ +Y+ T
Sbjct: 200 ITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERP---TPDAVFATIERYKPTVF 256
Query: 733 AGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792
G + M+ E DLSS++ + A E + R+ EL FGL
Sbjct: 257 FGVPTLYAAMLAAPEK-----PERDLSSLRLCVSAGEALPAEIGYRWKEL---FGLE--- 305
Query: 793 MAPGYGLAENC-VFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGE 851
+ G G E +F+S G K G+ GY ++++V+ + E
Sbjct: 306 ILDGIGSTEMLHIFLSNRPGAVKY---GTSGKPVPGY--------EVKLVDEDGEEV--A 352
Query: 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGD-LGRIIDGKFFITG 910
G+ GE+W+ S+ GYW R E ++ TF E +TRTGD R DG ++ G
Sbjct: 353 DGEIGELWVRGDSSAAGYWNRREKTRETFVGE--------WTRTGDKYYRDEDGYYWYCG 404
Query: 911 RIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGL 970
R D++ V+G V +VE + +H AV+G +E TK +
Sbjct: 405 RSDDMLKVSGIWVSPFEVEDAL---LQHPAVLEAAVVGAEDEDGLTKPKAF--------- 452
Query: 971 VVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRT------MSKTTSGKIKRF 1024
VV+ +DG ++ +K V ++ +A K PR + KT +GKI+RF
Sbjct: 453 VVL---KDGYQPSPELETELKDFVKDK----LAPYKY--PRWIEFVDELPKTATGKIQRF 503
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-31
Identities = 105/458 (22%), Positives = 165/458 (36%), Gaps = 95/458 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY EL A R+A +LL GD V + D A C++A VP+ P
Sbjct: 18 TYAELKERADRLAARLLALGGR---AGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPS 74
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
P +R I I ++ G A+++
Sbjct: 75 QPAER-------IAKILEAAGPAALVAD-------------------------------- 95
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
PDDL ++ FTSGSTG KGV I+H L + M + + T V +
Sbjct: 96 ----------PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQA 145
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFA-FEL 741
P D+ + LF A+ G+T + I +PL E + ++ T P+FA L
Sbjct: 146 PFSFDLSVF-DLFPALASGATLYVIPKEQ-IADPLALFEFLKEHGLTVWVSVPSFASLLL 203
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPG----- 796
+ R L L S++ + E + + K P
Sbjct: 204 LSRELNPES-------LPSLRTFLFCGEVLPKKLAKALRRR-----------FPNARIIN 245
Query: 797 -YGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE 855
YG E V+ + P L + GY P + I++ + PG+E
Sbjct: 246 LYGPTEAT--VAVTAYEVTPEPLSRNEPLPIGYP---KPGLRALILDED--GRPVPPGEE 298
Query: 856 GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKD 914
GE+ I+ P GY E + F + G+++ RTGDL + DG GR
Sbjct: 299 GELVIAGPQVSPGYLNNPEKTAKAFF----QDEGQRWYRTGDLVYLEDDGLLVYLGRKDF 354
Query: 915 LIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
I + G + ++E + + + V+ VP+
Sbjct: 355 QIKLHGYRIELEEIEAALRAL-PGVEE--AVVLPVPKG 389
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-31
Identities = 100/434 (23%), Positives = 167/434 (38%), Gaps = 107/434 (24%)
Query: 498 VAV---NQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRA 553
VAV +QS TY EL+ A+R+AH L R + PGD V + + V A ++A
Sbjct: 4 VAVVFGDQSLTYRELNERANRLAHYL---RARGVGPGDLVAICLERSPEMVVAILAVLKA 60
Query: 554 KVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDS 613
VP+ P P +R + + + GA +L+
Sbjct: 61 GAAYVPLDPAYPAER-------LAYMLEDSGAKLLLT----------------------- 90
Query: 614 WVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS 673
PDDL ++ +TSGSTG KGVM+ H GL++ + +++RY
Sbjct: 91 -------------------DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGL 131
Query: 674 TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSA 733
T+ ++ + D + +F ++ G+T +L P +++P E + ++R T
Sbjct: 132 TAGDRVLQFASFSFDAS-VWEIFPPLLSGATLVLAPPEV-LRDPEALAELLREHRITVLH 189
Query: 734 GPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM 793
++ LE + L S++ ++V E + V+R+ EL +
Sbjct: 190 LVPSLLRALLDALEPA-------ALPSLRLVIVGGEALPAELVRRWREL-----FPGARL 237
Query: 794 APGYGLAENCVFVSCAYGQ-----------GKPIILDWQGRVCCGYVDQNDPDVDIRIVN 842
YG E V V+ G+PI + + +++
Sbjct: 238 VNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPI-----------------ANTRVYVLD 280
Query: 843 PETSEEIGEP---GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLG 899
+ P G GE++I GY R EL+ F + G + RTGDL
Sbjct: 281 ED-----LRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLA 335
Query: 900 RII-DGKFFITGRI 912
R + DG GR
Sbjct: 336 RWLPDGNLEFLGRA 349
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-31
Identities = 129/534 (24%), Positives = 203/534 (38%), Gaps = 123/534 (23%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPV---PV 560
TY EL A+R A+ L + PGDRVLL+ + V AF C++A + V P+
Sbjct: 12 TYRELHDLANRFANVLRALG---VSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPL 68
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
L P L E+I GA
Sbjct: 69 LTPQDL----------EHILDDSGAAL--------------------------------- 85
Query: 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM-RKRYKSTSKTVL 679
L+ E DD+ + +TSG+TG KGVM H + + R+ +
Sbjct: 86 LVTE---------ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRI 136
Query: 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAF 739
S + GL L + G++A+L P L+ ++++R T G +
Sbjct: 137 FSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWP---TPEAVLDLLARHRPTVLFGVPALY 193
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799
++ S RS L + A E + +R+ E T + G G
Sbjct: 194 RALLESGAGSAPLFRSVRLC-----VSAGEALPAGLAERWAEAT------GIEILDGIGS 242
Query: 800 AENC-VFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEV 858
E +F+S G +P GR GY + R+V+ E+ G G++
Sbjct: 243 TEVLHIFISNRPGAARP---GTTGRPVPGY--------EARLVDES-GREVP-AGTVGDL 289
Query: 859 WISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLII 917
W+ PS GYW E +Q T R+ + RTGD DG + GR D+I
Sbjct: 290 WVRGPSLAPGYWNLPEKTQRTLRDG--------WLRTGDRFSRDADGWYRYQGRADDMIK 341
Query: 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR 977
V+G+ V +VE + EH AV+ VP+E DG ++ V+ R
Sbjct: 342 VSGQWVSPLEVE---AALGEHPAVAEAAVVAVPDE----------DGLVRLKAFVVP--R 386
Query: 978 DGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGKIKRFE 1025
G+ + + + ++ + E +A K PR T+ +T +GK++RF
Sbjct: 387 PGEAIQQLLERDLHRFLRE----RLAPYKC--PRQIEFLDTLPRTATGKLQRFR 434
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 96/409 (23%), Positives = 162/409 (39%), Gaps = 74/409 (18%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
DDL + +TSGSTG+ KGVM++H L + + + + T +++ LP D GL
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGL-S 59
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV 753
L TA G T +L S F P L+ ++K R T AG + ++R D +
Sbjct: 60 QLLTAFRVGGTLVLESRFAF---PRDVLKHLAKERITGFAGVPTTWAQLLR-----LDPL 111
Query: 754 RSFDLSSMKFLMVAAEPVRQTTVKRFVEL---TRPFGLSQGVMAPGYGLAENCVFVSCAY 810
D S+++L A + T+ + + F M YGL E Y
Sbjct: 112 AREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLF-----SM---YGLTEA---FRSTY 160
Query: 811 ---GQ--------GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859
+ GK I P+V++ +V+ + + PG+ GE+
Sbjct: 161 LPPEELDRRPDSIGKAI-----------------PNVELWVVDEDGNR--CAPGEVGELV 201
Query: 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIV 918
+ GYW E + R Y TGDL R+ +G + GR D+I
Sbjct: 202 HRGANVMKGYWNDPEATAERLRPGPLPGEIVLY--TGDLVRMDEEGYLYFVGRKDDMIKT 259
Query: 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRD 978
G V ++E+ + + + AVIGVP+ +L +V + D
Sbjct: 260 RGYRVSPTEIEEVI-CAHPLVAE--AAVIGVPDPLLGQA------------IVAVVVSAD 304
Query: 979 GKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027
G+ +D+ + + + + V A + + ++ K +GK+ R
Sbjct: 305 GESLDEKELLKHCRKHLPNYMVP-AEIVFVD--SLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-28
Identities = 103/403 (25%), Positives = 172/403 (42%), Gaps = 76/403 (18%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
PDD + TSG+TG KGV +TH L+ + + + K +K T ++ +P +H GLI
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60
Query: 694 GLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRAT-HSAGPNFAFELMVRRLESS 749
L ++ G + + FS F W + ++KYR T +SA P +++++ + +
Sbjct: 61 SLLATLLAGGSVVCPPKFSASKF------W-DDIAKYRVTWYSAVPTI-HQILLKTAKPN 112
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP---GYGLAENCVFV 806
K ++F+ A+ P+ + R + FG P YG+ E +
Sbjct: 113 PGKPPP----RLRFIRSASAPLPPAVLDRLEKR---FG------VPVLEAYGMTEAAHQI 159
Query: 807 SC---AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP 863
+ KP G V + V++ I++ + PG+EGE+ I P
Sbjct: 160 ASNPLPPLVRKP-----------GSVGRPAG-VEVAILDDDGRPL--PPGQEGEIVIRGP 205
Query: 864 SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRN 922
+ GY E ++ FR+ + RTGDLG + DG F+TGRIK+LI G
Sbjct: 206 NVTAGYLNNPEANREAFRD--------GWFRTGDLGYLDEDGYLFLTGRIKELINRGGEK 257
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
+ +VE E H V GVP+E+ G + V V+ R V
Sbjct: 258 ISPREVE---EVLLRHPAVAEAVVFGVPDELY---------GEE-VAAAVVL--RADSKV 302
Query: 983 DKDVIEN-IKTRVVE-EHGVTVASVKLIKPRTMSKTTSGKIKR 1023
+ + + + R+ + + V + P K +GKI+R
Sbjct: 303 TIEELRDFARKRLAAFKVPKKILFVDAL-P----KGATGKIQR 340
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-27
Identities = 91/332 (27%), Positives = 141/332 (42%), Gaps = 56/332 (16%)
Query: 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGL 691
++PDD + FTSGS G KGV+++H L+ N+ + ++ VL+ LP +H GL
Sbjct: 142 AKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGL 201
Query: 692 IGGLFTAMVGGSTAIL-FSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVRRLESS 749
L ++ G + +PL K E + Y+AT G P F R
Sbjct: 202 TVTLLLPLLTGLRVVYYPNPLDAKKIA----ELIRDYKATILCGTPTF-LRGYARNAHPE 256
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC- 808
D SS++ ++ AE + + T + F E FG+ + GYG E +S
Sbjct: 257 -------DFSSLRLVVAGAEKLPEATRELFEEK---FGI---RILEGYGATECSPVISVN 303
Query: 809 ------AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862
G+P+ P +++RIV+PET EE+ G+ G + +
Sbjct: 304 TPMGNKPGTVGRPL-----------------PGIEVRIVSPETHEEL-PIGEGGLLLVRG 345
Query: 863 PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGR 921
P+ GY EE + +E++ Y TGD+G+I DG I GR+K + G
Sbjct: 346 PNVMSGYLNNEEKT-----SEVEVLGDGWYD-TGDIGKIDEDGFLTIVGRLKRFAKIGGE 399
Query: 922 NVYSADVE-KTVESSTEHIRPGCCAVIGVPEE 952
V VE E E A + VP+E
Sbjct: 400 MVSLTAVEELLSEILPEDSL---HAAVEVPDE 428
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-27
Identities = 99/330 (30%), Positives = 155/330 (46%), Gaps = 52/330 (15%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS---TSKTVLVSWLPQYHDMG 690
P+DL FLQ+T G+TG AKG M+TH ++ N++ + Y K ++V+ LP YH
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFA 264
Query: 691 LIGG--LFTAMVGGSTAILFSPLTFIKNPL---LWLETMSKYRATHSAGPNFAFELMVRR 745
L LF + G +L I NP +++ + KY T G N F ++
Sbjct: 265 LTVNCLLFIEL--GGQNLL------ITNPRDIPGFVKELKKYPFTAITGVNTLFNALL-- 314
Query: 746 LESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVF 805
+ ++ + D SS+K + V+Q +R+V+LT + L GYGL E
Sbjct: 315 ---NNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLE------GYGLTECSPL 365
Query: 806 VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE-EIGEPGKEGEVWISSPS 864
VS P LD+ G + P +I++V+ + +E GEP GE+W+ P
Sbjct: 366 VSVN-----PYDLDYYS----GSIGLPVPSTEIKLVDDDGNEVPPGEP---GELWVKGPQ 413
Query: 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNV 923
+GYW R E + ++ + TGD+ + + G I R KD+I+V+G NV
Sbjct: 414 VMLGYWQRPEATDEVIKD--------GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNV 465
Query: 924 YSADVEKTVESSTEHIRPGCCAVIGVPEEV 953
Y ++E V H + A +GVP EV
Sbjct: 466 YPNEIEDVV---MLHPKVLEVAAVGVPSEV 492
|
Length = 560 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 8e-26
Identities = 92/430 (21%), Positives = 152/430 (35%), Gaps = 50/430 (11%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY ELDA A+R+A L + PG+ V ++ L+ V A ++A VP+ P
Sbjct: 254 TYAELDARANRLARLL---ISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPL 310
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTD--SWVKNSKNL 621
P +R + I + +L+ LP L D +
Sbjct: 311 YPAER-------LAYILEDSRPTLLLTQAHLRVDDV-----GLPGLALDDALSEIPDTDP 358
Query: 622 LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVS 681
+ D L ++ +TSGSTG KGV I H L + + R+ + +++
Sbjct: 359 IP------QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLA 412
Query: 682 WLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFEL 741
D + +F A++ G+ +L L +P LE + T L
Sbjct: 413 LASLSFDAS-VFEIFGALLEGARLVLAPALL-QVDPAALLELLEAQGITVLLLVPLLLRL 470
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801
++ + L L+ E + V+R + YG E
Sbjct: 471 LLLAALAPDLISPCERLRQ---LLSGGEALPLALVQRL----LQLAALARRLLNLYGPTE 523
Query: 802 NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861
+ PI + + RV G N + I++ G GE++I+
Sbjct: 524 ATLDAPSF-----PISAELESRVPIGRPVANTQ---LYILDQ--GLRPLPLGVPGELYIA 573
Query: 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGKFFITGRIKDLIIVAG 920
+GY R +L+ F R Y RTGDL R + DG GR + + G
Sbjct: 574 GLGLALGYLNRPDLTAERF------IALRLY-RTGDLARPLADGALEYLGRKDSQVKIRG 626
Query: 921 RNVYSADVEK 930
+ ++E
Sbjct: 627 FRIELGEIEA 636
|
Length = 642 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-25
Identities = 127/490 (25%), Positives = 207/490 (42%), Gaps = 89/490 (18%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG-LDFVDAFFGCMRAKVLPVPVLP 562
TY EL + A L + +KPGDR+ V +P L + A FG MRA ++ V+
Sbjct: 51 TYGELYKLSGAFAAWL--QQHTDLKPGDRIA-VQLPNVLQYPVAVFGAMRAGLI---VVN 104
Query: 563 PDPL-----------QRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSW-PNLPWLH 610
+PL G +AL+ + N++ V + + + V P L L
Sbjct: 105 TNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLL 164
Query: 611 TDSWVKNSKNLLAE----NVVCFTES--------------QPDDLCFLQFTSGSTGDAKG 652
++ VK+ K ++ V F ++ Q DD+ LQ+T G+TG AKG
Sbjct: 165 INAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKG 224
Query: 653 VMITHGGLIHNVKLMRKRYKST---SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFS 709
M+TH L+ N+ R S +L++ LP YH M+ G+ IL
Sbjct: 225 AMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNIL-- 282
Query: 710 PLTFIKNPL---LWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMV 766
I NP ++ + K++ + G N F + + R D S++K +
Sbjct: 283 ----ISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN-----EAFRKLDFSALKLTLS 333
Query: 767 AAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCC 826
++ T +R+ E+T G + + GYG+ E VS P +
Sbjct: 334 GGMALQLATAERWKEVT---GCA---ICEGYGMTETSPVVS-----VNPS-----QAIQV 377
Query: 827 GYVDQNDPDVDIRIVNPETSE-EIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQ 885
G + P ++++ + +E +GE GE+ + P GYW R E + ++
Sbjct: 378 GTIGIPVPSTLCKVIDDDGNELPLGEV---GELCVKGPQVMKGYWQRPEATDEILDSD-- 432
Query: 886 NNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC- 943
+ +TGD+ I DG I R KD+I+V+G NVY ++E + + PG
Sbjct: 433 -----GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAA-----LPGVL 482
Query: 944 -CAVIGVPEE 952
CA IGVP+E
Sbjct: 483 QCAAIGVPDE 492
|
Length = 562 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-25
Identities = 133/490 (27%), Positives = 193/490 (39%), Gaps = 128/490 (26%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLL--------------------VYVP---- 539
TY +LDA ++R+A+ LL + +KPGDRV + V++P
Sbjct: 30 TYGDLDAASARLAN-LLVALG--VKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86
Query: 540 -GLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAV 598
L +D F G ++ DP + I+ + GA + T+ A
Sbjct: 87 YTLAELDYFIGDAEPALVVC-----DPANFAW-----LSKIAAAAGAPHVE-TLD---AD 132
Query: 599 RVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHG 658
GS D E V DDL + +TSG+TG +KG M++HG
Sbjct: 133 GTGSLLEAAAAAPDD---------FETVPR----GADDLAAILYTSGTTGRSKGAMLSHG 179
Query: 659 GLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPL 718
L+ N + ++ T VL+ LP +H GL A++ G++ I +P
Sbjct: 180 NLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKF----DPD 235
Query: 719 LWLETMSKYRATHSAG-PNFAFELMVRRLES---SKDKVRSFDLSSMKFLMVAAEPVRQT 774
L M RAT G P F R L+ +++ M+ + + P+
Sbjct: 236 AVLALMP--RATVMMGVPTF----YTRLLQEPRLTREAAAH-----MRLFISGSAPLLAE 284
Query: 775 TVKRFVELT------RPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGY 828
T + F E T R YG+ E + S Y G+ R G
Sbjct: 285 THREFQERTGHAILER------------YGMTETNMNTSNPY-DGE--------RRA-GT 322
Query: 829 VDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNR 888
V P V +R+ +PET E+ PG+ G + + P+ GYW E + FR +
Sbjct: 323 VGFPLPGVSLRVTDPETGAELP-PGEIGMIEVKGPNVFKGYWRMPEKTAEEFRAD----- 376
Query: 889 GRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEK-------TVESSTEHIR 940
+ TGDLG+I G I GR KDLII G NVY +VE VES
Sbjct: 377 --GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVES------ 428
Query: 941 PGCCAVIGVP 950
AVIGVP
Sbjct: 429 ----AVIGVP 434
|
Length = 504 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 8e-25
Identities = 134/501 (26%), Positives = 214/501 (42%), Gaps = 103/501 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG-LDFVDAFFGCMRAKVLPVPVLP 562
+Y EL+ +++ A L + + PGDR+ V +P L + A FG +RA ++ V+
Sbjct: 51 SYAELERHSAAFAAYL--QQHTDLVPGDRIA-VQMPNVLQYPIAVFGALRAGLI---VVN 104
Query: 563 PDPL-----------QRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLP---- 607
+PL G +AL+ + K V + I Y ++G LP
Sbjct: 105 TNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDL--LPAAKG 162
Query: 608 WLHTDSWVKNSKNLLAE----NVVCFTES---------QP-----DDLCFLQFTSGSTGD 649
WL ++ V K ++ V F ++ +P DD+ LQ+T G+TG
Sbjct: 163 WL-VNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGL 221
Query: 650 AKGVMITHGGLIHNVKLMRKRYKST----------SKTVLVSWLPQYHDMGLIGGLFTAM 699
AKG M+THG L+ N+ +R + V+++ LP YH M
Sbjct: 222 AKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM 281
Query: 700 VGGSTAILFSPLTFIKNPLL---WLETMSKYRATHSAGPNFAF-ELMVRRLESSKDKVRS 755
V G+ +L I NP +++ + K+R + G N F LM +
Sbjct: 282 VSGNHNVL------ITNPRDIPGFIKELGKWRFSALLGLNTLFVALM------DHPGFKD 329
Query: 756 FDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCA--YGQG 813
D S++K + + T +R+ +LT G + + GYGL E V+ YG+
Sbjct: 330 LDFSALKLTNSGGTALVKATAERWEQLT---GCT---IVEGYGLTE-TSPVASTNPYGE- 381
Query: 814 KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP-GKEGEVWISSPSAGIGYWGR 872
R+ G V P +++++ + +E P G+ GE+ I P GYW +
Sbjct: 382 -------LARL--GTVGIPVPGTALKVIDDDGNE---LPLGERGELCIKGPQVMKGYWQQ 429
Query: 873 EELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKT 931
E + E + +TGD+ I DG I R KDLIIV+G NVY ++E
Sbjct: 430 PEATAEALDAE-------GWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDV 482
Query: 932 VESSTEHIRPGCCAVIGVPEE 952
V + H + CA IGVP+E
Sbjct: 483 VMA---HPKVANCAAIGVPDE 500
|
Length = 562 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-25
Identities = 130/612 (21%), Positives = 205/612 (33%), Gaps = 123/612 (20%)
Query: 485 QKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544
L A+ TY EL +A LL+ I GDRV + ++
Sbjct: 31 DGVALMYKELGGWEAI---TYRELYERVRALASGLLSL---GIPAGDRVAIFAANRPEWA 84
Query: 545 DAFFGCMRAKVLPVPV---LPPDPLQR------------GGQALL-KIENISKSCGAVA- 587
A + + VP+ P+ L Q LL + + + C V
Sbjct: 85 IADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVD 144
Query: 588 -ILSTIGYHSAVRVGS--WPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTS 644
I+ AV + P ++ +S L +PDDL + +TS
Sbjct: 145 LIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIA----PPKPDDLATIIYTS 200
Query: 645 GSTGDAKGVMITHGGLIHNVKLMRKRY-KSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703
G+TG KGVM+TH L+ V + + ++S+LP H A+ GG
Sbjct: 201 GTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGV 260
Query: 704 -TAILFSPLTFIKNPLLWLETMSKYRATHSAGP----------------------NFAFE 740
P T LE + + R T G F
Sbjct: 261 TVLFKEDPRTL-------LEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR 313
Query: 741 LMVRRLESSKDKVRSFDLSSMKFLMVAAEPV----RQTTVKRFV-----------ELTRP 785
+ ++ K + +L+VA V R R EL
Sbjct: 314 WAL-KVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLH- 371
Query: 786 FGLSQGV-MAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPE 844
F S G+ + GYGL E VS +L G+ P ++++I +
Sbjct: 372 FFRSLGIPILEGYGLTETSAVVSVNPPDR--FVLGTVGKPL--------PGIEVKIAD-- 419
Query: 845 TSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-ID 903
+GE+ + P+ GY+ E + F + G + RTGDLG + D
Sbjct: 420 ----------DGEILVRGPNVMKGYYKNPEATAEAFTED-----G--WFRTGDLGELDED 462
Query: 904 GKFFITGRIKDLIIVA-GRNVYSADVEKTVESST--EHI------RPGCCAVIGVPEEVL 954
G ITGR K+LI ++ G+N+ +E + S E I + A+I + L
Sbjct: 463 GYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDAL 522
Query: 955 STKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS 1014
S++ + + + K + V + K E V L K T
Sbjct: 523 EKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKF--VLLPKEFTPE 580
Query: 1015 K---TTSGKIKR 1023
T + K+KR
Sbjct: 581 NGELTPTLKLKR 592
|
Length = 613 |
| >gnl|CDD|163706 cd08150, catalase_like, Catalase-like heme-binding proteins and protein domains | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 73/313 (23%), Positives = 114/313 (36%), Gaps = 43/313 (13%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAI 1774
R H G G + +++ +F GK YP +R SN DD D RG AI
Sbjct: 3 RGQHFQGTCAFGTFEVLADLKERLRVGLFAEGKVYPAYIRFSNGAGIDDTKP-DIRGFAI 61
Query: 1775 RIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLV---------CGLAAREEHVKRVP 1825
+ + T LD L F+ R D+ ++ L +V++ P
Sbjct: 62 KFTGVADAGT---LDFVLNNTPVFFIRNTSDYEDFVAEFARSARGEPPLDFIAWYVEKRP 118
Query: 1826 H-IRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEP 1884
+ + + ++ DSYA Y+S + F G+ V+ K P D + E+E
Sbjct: 119 EDLPNLLGARSQVPDSYAAARYFSQVTFAFINGAGKYRVVRSKDNPVDGIPSLEDHELEA 178
Query: 1885 RGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIAL 1944
R PP+ +L +E R+ V Y F++Q+ D D
Sbjct: 179 R---PPD---------------YLREELTERLQR-GPVVYDFRIQLND-DTDATTID--- 215
Query: 1945 DCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDH 2004
+ T W E+P V +I+I T E FNP+ + + I
Sbjct: 216 NPTILWPT-EHPVEAVAKITIPPPTFTAAQEAFAFNPFTPWHGLLETNDL-----GPILE 269
Query: 2005 GRSLIYEICQHLR 2017
R +Y Q LR
Sbjct: 270 VRRRVYTSSQGLR 282
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. Length = 283 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-24
Identities = 122/548 (22%), Positives = 198/548 (36%), Gaps = 148/548 (27%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ EL + R A+ L + + GDRV ++ + GC++ + +P
Sbjct: 2 TFAELKEESDRAANFL---KDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIP---- 54
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
G L G I + + R
Sbjct: 55 ------GTTQL---------GPKDIRYRLE-RAGARA----------------------- 75
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHG-GLIHNVKLMRKRYKSTSKTVL--- 679
+V DD L FTSG+TG K V+ TH L H T L
Sbjct: 76 --IVT----SADDPALLYFTSGTTGLPKMVLHTHSYPLGH---------LVTGAYWLDLR 120
Query: 680 ---VSWLPQYHDMGLIGGLFTAMVG----GSTAILFSPLTFIKNPLLWLETMSKYRATHS 732
+ W D G G ++++ G+ ++ F + LE + +Y T
Sbjct: 121 PDDLHWTIA--DPGWAKGAWSSLFAPWLLGAAVFVYHGRRF--DAERTLELLERYGVTTF 176
Query: 733 AGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792
P A+ +++ + + S S+D S ++ ++ A EP+ + + T GL
Sbjct: 177 CAPPTAYRMLL-QQDLS-----SYDFSHLRHVVSAGEPLNPEVIDWWRAAT---GLP--- 224
Query: 793 MAPGYGLAENCVFVSCAYGQG-KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGE 851
+ GYG E + V+ G KP G + + P + I++ E +E
Sbjct: 225 IRDGYGQTETGLLVANFPGMEVKP-----------GSMGRPAPGYRVAIIDDEGNEL--P 271
Query: 852 PGKEGEVWI----SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKF 906
PG+EG++ + P GY E ++ T R + + TGD DG F
Sbjct: 272 PGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD--------WYLTGDRAIKDEDGYF 323
Query: 907 FITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSD 966
+ GR D+I +G + +VE + EH AV+G P+ V G
Sbjct: 324 WFVGRADDVIKSSGYRIGPFEVESAL---IEHPAVAEAAVVGSPDPVR---------GEV 371
Query: 967 QVGLVVIAEVRDGKPVD---KDVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTT 1017
VV+A +P + K++ E++K R A K PR + KT
Sbjct: 372 VKAFVVLAP--GYQPSEELAKELQEHVKKR--------TAPYK--YPREIEFVEELPKTV 419
Query: 1018 SGKIKRFE 1025
SGKI+R E
Sbjct: 420 SGKIRRVE 427
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-23
Identities = 150/572 (26%), Positives = 232/572 (40%), Gaps = 120/572 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP- 562
TY E D + A LL + +K GDRV L+ L + A FG +RA + V V P
Sbjct: 52 TYREADQLVEQFAAYLLGELQ--LKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPL 109
Query: 563 --PDPLQR-----GGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWV 615
P L+ G L+ I+N + V + + +G P ++V
Sbjct: 110 YTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFV 169
Query: 616 -KNSKNLLAE----NVVCFTES--------------QPDDLCFLQFTSGSTGDAKGVMIT 656
K K L+ E + F E+ +PDD+ FLQ+T G+TG AKG M+T
Sbjct: 170 VKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLT 229
Query: 657 HGGLIHNVKLMRKRYKSTSK-----TVLVSWLPQYHDMGLIG-GLFTAMVGGSTAILFSP 710
H L+ N++ + T K V+++ LP YH L GL +GG ++ +P
Sbjct: 230 HRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNP 289
Query: 711 L---TFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVA 767
F+K + K R T G N F ++ D++ D SS+K +
Sbjct: 290 RDMPGFVKE-------LKKTRFTAFTGVNTLFNGLLN--TPGFDQI---DFSSLKMTLGG 337
Query: 768 AEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAEN----CVFVSCAYGQGKPIILDWQGR 823
V+++ +R+ ++T GL+ + YGL E C+ P+ L
Sbjct: 338 GMAVQRSVAERWKQVT---GLT---LVEAYGLTETSPAACI---------NPLTLKEYN- 381
Query: 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNE 883
G + P D I + + + G+ GE+ I P GYW R E + +
Sbjct: 382 ---GSIGLPIPSTDACI--KDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDAD 436
Query: 884 LQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG 942
+ TGD+ R+ + G +I R KD+I+V+G NVY ++E + + PG
Sbjct: 437 -------GWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA-----MMPG 484
Query: 943 C--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGV 1000
A +GVP+E S ++ VVI V KD + V+ H
Sbjct: 485 VLEVAAVGVPDE-----------KSGEIVKVVI--------VKKD--PALTAEDVKAHAR 523
Query: 1001 T-VASVKLIKPR------TMSKTTSGKIKRFE 1025
+ K PR + KT GKI R E
Sbjct: 524 ANLTGYKQ--PRIIEFRKELPKTNVGKILRRE 553
|
Length = 560 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-23
Identities = 128/553 (23%), Positives = 212/553 (38%), Gaps = 105/553 (18%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL-DFVDAFFGCMRAKVLPVPVLP 562
TY LD ASR+A+ LL I+PGDRV +PG +F + C++ + VP+LP
Sbjct: 51 TYSALDHAASRLANWLLAKG---IEPGDRVAF-QLPGWCEFTIIYLACLKVGAVSVPLLP 106
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHS--------AVR---------VGSWPN 605
L+ + N C A + + ++ VG
Sbjct: 107 ----SWREAELVWVLNK---CQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL 159
Query: 606 LPWLHTDSWVKNSKNLLAENVVCFTESQP-----DDLCFLQFTSGSTGDAKGVMITHGGL 660
P + S ++A+ + D+L + FTSG+ G KGVM+TH +
Sbjct: 160 APATSSLSL----SQIIADY---EPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNI 212
Query: 661 IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLW 720
+ + + R T + V + P H G + G+ + G+ ++L I P
Sbjct: 213 LASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD----IFTPDAC 268
Query: 721 LETMSKYRATHSAGPN-FAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779
L + + R T G F ++L+ LE DLS+++F + + + +
Sbjct: 269 LALLEQQRCTCMLGATPFIYDLL-NLLEKQP-----ADLSALRFFLCGGTTIPKKVARE- 321
Query: 780 VELTRPFGLSQGVM-APGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDI 838
+G+ YG E+ + G G V+I
Sbjct: 322 -------CQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAG--------VEI 366
Query: 839 RIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDL 898
++V+ E + + PG EGE P+ +GY EL+ + G Y +GDL
Sbjct: 367 KVVD-EARKTL-PPGCEGEEASRGPNVFMGYLDEPELT-----ARALDEEGWYY--SGDL 417
Query: 899 GRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTK 957
R+ G ITGR KD+I+ G N+ S +VE + +H + V+ +P+E L
Sbjct: 418 CRMDEAGYIKITGRKKDIIVRGGENISSREVEDIL---LQHPKIHDACVVAMPDERL--- 471
Query: 958 GISVSDGSDQVGLVVIAEVRDGKPVDKDVIE-----NIKTRVVEEHGVTVASVKLIKPRT 1012
G VV+ ++V+ + EH V + + PR
Sbjct: 472 ------GERSCAYVVLKA-PHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKL----PR- 519
Query: 1013 MSKTTSGKIKRFE 1025
T SGKI++F
Sbjct: 520 ---TASGKIQKFL 529
|
Length = 547 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-23
Identities = 103/522 (19%), Positives = 179/522 (34%), Gaps = 91/522 (17%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+++LD A+ +A L + I+ G RV LV ++ V C+ L +
Sbjct: 1 TWQDLDCEAAHLAKAL---KAQGIRSGSRVALVGQNSIEMVLLLHACLL---LGAEIAML 54
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
+ + ++E++ L A +L +
Sbjct: 55 NTRLTENERTNQLEDLDVQLLLTDSLLEEKDFQAD------SLDRIEAAG---------R 99
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
D + L FTSG+TG K V T + ++ T + L
Sbjct: 100 YETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSL 159
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH-SAGPNFAFELM 742
P YH GL LF ++ G+T + N LL E ++ R TH S P +
Sbjct: 160 PLYHISGL-SILFRWLIEGATLRIVDK----FNQLL--EMIANERVTHISLVPT----QL 208
Query: 743 VRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAEN 802
R L+ ++ +++ + ++ + P L YG+ E
Sbjct: 209 NRLLDEGGHNEN------LRKILLGGSAIPAPLIEEAQQYGLPIYL-------SYGMTET 255
Query: 803 CVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862
C V+ A + D GR +I+I GE+ +
Sbjct: 256 CSQVTTATPEMLHARPD-VGRPL--------AGREIKIKVDNKEGH-------GEIMVKG 299
Query: 863 PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGR 921
+ GY + EL +G + TGD+G + +G ++ GR DLII G
Sbjct: 300 ANLMKGYLYQGEL------TPAFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLIISGGE 351
Query: 922 NVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP 981
N+Y ++E + I+ V+ P+ + G V +A +
Sbjct: 352 NIYPEEIETVLYQHP-GIQE--AVVVPKPD--------------AEWGQVPVAYIVSESD 394
Query: 982 VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
+ + + T + ++ V +A KL + SGKI R
Sbjct: 395 ISQAKLIAYLTEKLAKYKVPIAFEKL---DELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-23
Identities = 130/552 (23%), Positives = 217/552 (39%), Gaps = 111/552 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y EL+A R+ L R+ +K +RVLL+ + G+DF AF G +RA ++PV +
Sbjct: 32 SYGELEAQVRRLGAAL---RRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL--- 85
Query: 564 DPLQRGGQALL---KIENISKSCGAVAILSTIGYHSAVR--VGSWPNLPWLHTDSWVKNS 618
LL + + A + + ++ +G P+L +
Sbjct: 86 -------NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAG 138
Query: 619 KNLLAENVVCFTE------SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM-RKRY 671
+ LAE + +E +Q DD F ++SGSTG KGV+ TH +L R
Sbjct: 139 EVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198
Query: 672 KSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH 731
V+ S + GL L M G+T +L P + + +++ T
Sbjct: 199 GIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGER---PTPDAVFDRLRRHQPTI 255
Query: 732 SAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQG 791
G + M+ + + + D ++ A E + +R+ FG+
Sbjct: 256 FYGVPTLYAAML-----ADPNLPAEDQVRLRLCTSAGEALPAEVGQRW---QARFGVD-- 305
Query: 792 VMAPGYGLAENC-VFVSCA-----YG-QGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPE 844
+ G G E +F+S YG GKP+ P +R+V
Sbjct: 306 -IVDGIGSTEMLHIFLSNLPGDVRYGTSGKPV-----------------PGYRLRLVG-- 345
Query: 845 TSEEIGEP---GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGD-LGR 900
+ G+ G+ GE+ IS PS+ YW ++ TF+ E +TR+GD R
Sbjct: 346 ---DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGE--------WTRSGDKYVR 394
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGV--PEEVLSTKG 958
DG + GR D++ V+G V ++E + H AV+GV + ++ K
Sbjct: 395 NDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQ---HPAVLEAAVVGVEDEDGLIKPKA 451
Query: 959 ISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR------T 1012
V +R G+ +D + +K V + +A K PR
Sbjct: 452 FIV--------------LRPGQDIDTALETELKEHVKDR----LAPYKY--PRWIVFVDD 491
Query: 1013 MSKTTSGKIKRF 1024
+ KT +GKI+RF
Sbjct: 492 LPKTATGKIQRF 503
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 8e-22
Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 43/322 (13%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK---TVLVSWLPQYHDMGL 691
+DL LQ+T G+TG KGVM+TH L+ N LM ++ K V++ LP +H G+
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNT-LMGVQWLYNCKEGEEVVLGVLPFFHVYGM 264
Query: 692 IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVRRLESSK 750
+ +++ G +L + E + K++ T G P L+ L
Sbjct: 265 TAVMNLSIMQGYKMVLIPKFDM----KMVFEAIKKHKVTLFPGAPTIYIALLNSPL---- 316
Query: 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY 810
++ +D+SS++ + + P+ ++F +T G + GYGL E+ +
Sbjct: 317 --LKEYDISSIRACISGSAPLPVEVQEKFETVT------GGKLVEGYGLTESSPVTHSNF 368
Query: 811 GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYW 870
W+ RV G + PD + I++ ET E + PG+ GE+ + P GYW
Sbjct: 369 --------LWEKRV-PGSIGVPWPDTEAMIMSLETGEAL-PPGEIGEIVVKGPQIMKGYW 418
Query: 871 GREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVE 929
+ E + ++ + TGD+G + DG F++ R KD+I+ +G NVY +VE
Sbjct: 419 NKPEETAAVLQD--------GWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVE 470
Query: 930 KTVESSTEHIRPGCCAVIGVPE 951
+ + EH + IGVP+
Sbjct: 471 EVL---YEHEKVQEVVTIGVPD 489
|
Length = 563 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-22
Identities = 117/537 (21%), Positives = 187/537 (34%), Gaps = 135/537 (25%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ ELD + RIA L S I+ GDRV+L+ PG D F +
Sbjct: 4 TFRELDERSDRIARGLRASG---IRKGDRVVLMVPPGADLTALTFALFKV---------- 50
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
GAV +L D + K+L
Sbjct: 51 --------------------GAVPVL---------------------IDPGM-GRKHLGR 68
Query: 624 ENVVCFTESQP---------DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST 674
C E++P DD + FTSGSTG KGV+ TH + +R Y
Sbjct: 69 ----CLEEAEPDAFIGIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIR 124
Query: 675 SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAI----LFSPLTFIKNPLLWLETMSKYRAT 730
++ P + LF +G +T I +P +P + + + A+
Sbjct: 125 EGDRDLAAFPPF-------ALFGPALGVTTVIPAMDPTAPAAL--DPAKLAQAIREIGAS 175
Query: 731 HSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV-------ELT 783
G + + R E + L S++ ++ A PV ++RFV E+
Sbjct: 176 CVFGSPALLKNVARYCEEN-----GIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIH 230
Query: 784 RPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNP 843
P+G ++ + E + G VC G+ P +D+RI+ P
Sbjct: 231 TPYGATEALPVASIEGREVLAESAEPPEAGAG--------VCVGHPV---PGIDVRII-P 278
Query: 844 ETSEEIGE--------PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRT 895
I PG+ GE+ +S P Y+ R E +++ ++ R + R
Sbjct: 279 IDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISD----GNRIWHRM 334
Query: 896 GDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVL 954
GDLG D G+ + GR + AG +++ VE+ H A++GV +
Sbjct: 335 GDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFN---RHPGVRRSALVGVGKP-- 389
Query: 955 STKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVK-LIKP 1010
G+ LVV E + +E ++ TV LI P
Sbjct: 390 ---------GTQAPVLVV--EPMPPVLDRRKRLEGRLRATAKQAPATVEIQAVLIHP 435
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-21
Identities = 114/472 (24%), Positives = 183/472 (38%), Gaps = 66/472 (13%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y ELD A R+A L R+ IKPGD VL+ +F FF +R V PV LP
Sbjct: 55 SYAELDQRADRLAAGL---RRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALP- 110
Query: 564 DPLQRGGQALLKIENISKSCGAVAIL-----STIGYHSAVR--VGSWPNLPWLHTDSWVK 616
++ + A ++ S Y R V P L + +
Sbjct: 111 ------SHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAE 164
Query: 617 NSKNL------LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR 670
+ L A + ++ F Q + G+TG K + TH ++V+ +
Sbjct: 165 HPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEI 224
Query: 671 YKSTSKTVLVSWLPQYHDMGLI--GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYR 728
+TV + LP H+ L G L + GG+ + P +P L + ++
Sbjct: 225 CGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDP-----SPELCFPLIERHG 279
Query: 729 ATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788
T +A L ++ E + DLSS++ L V + T +R V L
Sbjct: 280 VTVTALVPPLASLWLQAAEWERA-----DLSSLRLLQVGGARLSATLARR-VPAVLGCQL 333
Query: 789 SQGVMAPGYGLAENCVFVSCAYGQGKP--IILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
Q +G+AE V P II+ QGR PD ++R+V+ +
Sbjct: 334 QQ-----VFGMAEGLV---NYTRLDDPPEIIIHTQGRPLS-------PDDEVRVVDAD-G 377
Query: 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGK 905
+ PG+ GE+ P GY+ E + F + + R+GDL R DG
Sbjct: 378 NPVA-PGEVGELLTRGPYTIRGYYRAPEHNARAFDAD-------GFYRSGDLVRRDPDGY 429
Query: 906 FFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTK 957
+ GR+KD I G + + +VE + A++ +P+E+L K
Sbjct: 430 LVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHD---AALVAMPDELLGEK 478
|
Length = 542 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-21
Identities = 136/576 (23%), Positives = 221/576 (38%), Gaps = 117/576 (20%)
Query: 487 KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVD 545
KT T + A + TY EL A R+A L + + GD V+ +P +F
Sbjct: 40 KTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLA---RLGVGRGD-VVSCQLPNWWEFTV 95
Query: 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTI-GY-HSAVRVGSW 603
+ C R + P L P +R +LK SK + + T G+ H+A+
Sbjct: 96 LYLACSRIGAVLNP-LMPIFRERELSFMLK-HAESK---VLVVPKTFRGFDHAAMARRLR 150
Query: 604 PNLPWLHT---------DSWVK-----------NSKNLLAENVVCFTESQPDDLCFLQFT 643
P LP L DS+ ++ +LA PDD+ L +T
Sbjct: 151 PELPALRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARL-----RPGPDDVTQLIYT 205
Query: 644 SGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703
SG+TG+ KGVM T L+ N+ +R + V++ P H G + GL ++ G+
Sbjct: 206 SGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGA 265
Query: 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPN-FAFELMVRRLESSKDKVRSFDLSSMK 762
TA+L I +P E + T + F +L ES + +SS++
Sbjct: 266 TAVLQD----IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP------VSSLR 315
Query: 763 FLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQG 822
+ A P+ V+R G + +G+ EN G
Sbjct: 316 TFLCAGAPIPGALVER---ARAALGAK---IVSAWGMTEN-------------------G 350
Query: 823 RVCCGYVDQND-----------PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWG 871
V +D D P V++R+V+ + + G+ G + + S GY
Sbjct: 351 AVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPL--PAGQIGRLQVRGCSNFGGYLK 408
Query: 872 REELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEK 930
R +L+ + TGDL RI DG I+GR KD+II G N+ ++E
Sbjct: 409 RPQLNGTDADG---------WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEA 459
Query: 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENI 990
+ H A++ P+E L G VV R G+ +D + +
Sbjct: 460 LL---YRHPAIAQVAIVAYPDERL---------GERACAFVVP---RPGQSLDFEEM--- 501
Query: 991 KTRVVEEHGVTVASV--KLIKPRTMSKTTSGKIKRF 1024
++ V + +L+ + +T SGKI++F
Sbjct: 502 -VEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKF 536
|
Length = 547 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-21
Identities = 114/552 (20%), Positives = 203/552 (36%), Gaps = 99/552 (17%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLP 562
TY L +A L + G+RV +Y+ L+ V A FG A + VP+
Sbjct: 27 TYAALSERVLALASGLRGL---GLARGERVA-IYLDKRLETVTAMFGAALAGGVFVPI-- 80
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSW-PNLP-------WLHTDSW 614
+PL + Q + +I C V +L T S+ R+ P LP +
Sbjct: 81 -NPLLKAEQ----VAHILADCN-VRLLVT----SSERLDLLHPALPGCHDLRTLIIVGDP 130
Query: 615 VKNSKNLLAENVVCFTESQ------------PDDLCFLQFTSGSTGDAKGVMITHGGLIH 662
S+ E + + D+ + +TSGSTG KGV+++H L+
Sbjct: 131 AHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVA 190
Query: 663 NVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLE 722
+ + ++ L++ LP D G L TA G+T +L L P L+
Sbjct: 191 GAQSVATYLENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDYLL----PRDVLK 245
Query: 723 TMSKYRATHSAG-PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKR--- 778
+ K+ T A P +L ++ S+++L + + + T+ R
Sbjct: 246 ALEKHGITGLAAVPPLWAQL-------AQLDWPESAAPSLRYLTNSGGAMPRATLSRLRS 298
Query: 779 FVELTRPFGLSQGVMAPGYGLAE--NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDV 836
F+ R F YGL E ++ +P D G+ P+
Sbjct: 299 FLPNARLF--------LMYGLTEAFRSTYLPPEEVDRRP---DSIGKAI--------PNA 339
Query: 837 DIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFR----NELQNNRGRKY 892
++ ++ + SE PG+EGE+ +GYW E + FR + +
Sbjct: 340 EVLVLREDGSE--CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELA 397
Query: 893 TRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPE 951
+GD R +G + GR ++I +G V +VE+ ++ GVP+
Sbjct: 398 VWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATG---LVAEAVAFGVPD 454
Query: 952 EVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011
L +V++ G+ +D+ + + + V + +
Sbjct: 455 PTLGQ------------AIVLVVTPPGGEELDRAALLAECRARLPNYMVPAL---IHVRQ 499
Query: 1012 TMSKTTSGKIKR 1023
+ + +GKI R
Sbjct: 500 ALPRNANGKIDR 511
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-21
Identities = 74/406 (18%), Positives = 149/406 (36%), Gaps = 43/406 (10%)
Query: 1277 IWSADFVKWWALYKVHEVSCKVLAVYLRGTVFLNWWFEMLGAKLGSSVLLDTVDITDPSL 1336
IW + ++++W + ++ + + V L G+ + + LGAK+G V + ++ L
Sbjct: 75 IWGSTYLRFWTVKRLVDAAP---TVLLSGSPLYSLYLRALGAKIGKGVDIGSLPPVCTDL 131
Query: 1337 VLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQ 1396
+ IG G ++ + ++ + + G L P+ + R +G + + + IG+ A++
Sbjct: 132 LTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGS 191
Query: 1397 KSEGGKPI-----LKSTNANYVQKGGAVSKISTHRTQDEAIHQFIGIYIVSFLSTLSA-- 1449
+GG+ I + A + + T ++ +++V L A
Sbjct: 192 ALQGGQSIPDGERWHGSPAQKTGADYRKVQPARPYTVRRRLYVAGALFVVFVLLPPLAFL 251
Query: 1450 -----AITYFLYIWLSQKPASPRHFAFLCISGAFHWLPFTIIAYATMFASVPANPAYFAI 1504
AIT+ W A + A IAY +
Sbjct: 252 FAIPVAITFDEIDWTLGPDMVGFILALVLTFVAL----AGFIAYT------------VLL 295
Query: 1505 STAVAYLFHGLVLSYLTCILTHFLAGKKEEKQTHLKAWLCHRITIACHLRFAKLLSGTEA 1564
AV L + ++ + + F + +AW ++ L +
Sbjct: 296 LAAVRLLLNLVLKPGRYYVHSGF----------YYQAWTVQQLMDNS-RVLLFPLYASSY 344
Query: 1565 FCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVE 1624
+ R LGAKIG+ I + P +G + D + S F G+
Sbjct: 345 IPHWYRALGAKIGKVAEISSAQ-HEVPDLTDIGEETFIADGLLMGNARLSGGWFRLGRTR 403
Query: 1625 VQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGS 1670
+ S +G+ P + +V+LG LS+ P ++ G ++GS
Sbjct: 404 IGRRSFLGNSGYYPPGAKTGDNVLLGVLSMTPKDGKVREGVGWLGS 449
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-21
Identities = 145/584 (24%), Positives = 235/584 (40%), Gaps = 144/584 (24%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP- 562
TY ELD + +A L SR + G RV ++ L + A +RA + V V P
Sbjct: 50 TYGELDELSRALA-AWLQSRG--LAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPL 106
Query: 563 --PDPLQR-----GGQALLKIENISKSCGAV--------AILSTIG---------YHSAV 598
P L+ G +A++ +EN + + V +++++G + V
Sbjct: 107 YTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVV 166
Query: 599 R-----VGSWPNLPWLHTDSWVKNSKNLLAENVVCFT--ESQPDDLCFLQFTSGSTGDAK 651
R V +W +LP V+ + L F + PDD+ FLQ+T G+TG +K
Sbjct: 167 RRVKKMVPAW-SLP-----GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSK 220
Query: 652 GVMITHGGLIHNVKLM-------RKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGST 704
G + H ++ NV M ++ + V LP YH L M G
Sbjct: 221 GATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGR 280
Query: 705 AILFSPLTFIKNPL---LWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSM 761
IL I NP +++ + KY+ N + ++ + K D S +
Sbjct: 281 NIL------IPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDK-----LDFSKL 329
Query: 762 KFL----MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPII 817
M PV +R++E+T + GYGL+E P+
Sbjct: 330 IVANGGGMAVQRPV----AERWLEMTGCP------ITEGYGLSET-----------SPV- 367
Query: 818 LDWQGRVCCGYVDQND---------PDVDIRIVNPETSE-EIGEPGKEGEVWISSPSAGI 867
C VD + P ++ I + + ++ +GEP GE+ I P
Sbjct: 368 ------ATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEP---GEICIRGPQVMA 418
Query: 868 GYWGR-EELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFF--ITGRIKDLIIVAGRNVY 924
GYW R +E +++ + + RTGD+G ++D + + I R KD+I+V+G NVY
Sbjct: 419 GYWNRPDETAKVMTAD--------GFFRTGDVG-VMDERGYTKIVDRKKDMILVSGFNVY 469
Query: 925 SADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
++E+ V S H PG A +GVP+E + V L V+ +D
Sbjct: 470 PNEIEEVVAS---H--PGVLEVAAVGVPDE----------HSGEAVKLFVVK--KDPALT 512
Query: 983 DKDVIENIKTRVVEEHGVTVASVKLIKPRT-MSKTTSGKIKRFE 1025
++DV K R+ K ++ RT + KT GKI R E
Sbjct: 513 EEDVKAFCKERLT---NYKRP--KFVEFRTELPKTNVGKILRRE 551
|
Length = 557 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 5e-21
Identities = 89/329 (27%), Positives = 136/329 (41%), Gaps = 47/329 (14%)
Query: 631 ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMG 690
+ P D+ L +T G+TG KGVM TH + ++ ++ + + P H
Sbjct: 164 AALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSH--- 220
Query: 691 LIGGLF---TAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRR 745
GG F T + GG+ +L F P L + + R T + F M+
Sbjct: 221 -AGGAFFLPTLLRGGTVIVLAKFDPAEV-------LRAIEEQRITAT----FLVPTMIYA 268
Query: 746 LESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVF 805
L D +R+ DLSS++ + A P+ R E FG + A YG E
Sbjct: 269 LLDHPD-LRTRDLSSLETVYYGASPMSPV---RLAEAIERFG---PIFAQYYGQTE-APM 320
Query: 806 VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE-EIGEPGKEGEVWISSPS 864
V + D + CG P + + +++ + E GE G E+ + P
Sbjct: 321 VITYLRKRDHDPDDPKRLTSCGRPT---PGLRVALLDEDGREVAQGEVG---EICVRGPL 374
Query: 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNV 923
GYW R E + FR+ + TGD+ R DG ++I R KD+I+ G NV
Sbjct: 375 VMDGYWNRPEETAEAFRD--------GWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNV 426
Query: 924 YSADVEKTVESSTEHIRPGCCAVIGVPEE 952
+ +VE + EH AVIGVP+E
Sbjct: 427 FPREVEDVL---AEHPAVAQVAVIGVPDE 452
|
Length = 524 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 5e-21
Identities = 135/546 (24%), Positives = 213/546 (39%), Gaps = 119/546 (21%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY ELDA R+A L R+ G+R+ ++ + V F C R + VP+
Sbjct: 24 TYAELDALVGRLAAVL---RRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWR 80
Query: 561 LPPDPLQRGGQALLKIENISKSCG--AVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNS 618
L L ALL+ G AVA T +++ ++
Sbjct: 81 LSASELD----ALLQDAEPRLLLGDDAVAAGRTDV---------------EDLAAFIASA 121
Query: 619 KNLLAENVVCFTES-QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKT 677
L T S P+ + + FTSG++G KGVM++ L + + +
Sbjct: 122 DALEPA----DTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHS 177
Query: 678 VLVSWLPQYHDMGLIGGLF-TAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
+ P +H +GLI + VGGS IL S K L L + TH
Sbjct: 178 SFLCDAPMFHIIGLITSVRPVLAVGGS--ILVSNGFEPKRTLGRLGDPA-LGITHY---- 230
Query: 737 FAFELMVRRLESSKDKVRSFDLSSMKFLMV--------AAEPVRQTTVKRFVELTRPFGL 788
F M + + FD ++++ L AAE + L
Sbjct: 231 FCVPQMAQAFRAQPG----FDAAALRHLTALFTGGAPHAAEDILGW-------------L 273
Query: 789 SQGV-MAPGYGLAE-NCVF---VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNP 843
G+ M G+G++E VF V C + K G P V R+V+
Sbjct: 274 DDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK-----------AGAAGIPTPTVQTRVVDD 322
Query: 844 ETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLG-RII 902
+ ++ G GE+ + P+ GYW R + + F + + RTGD+ R
Sbjct: 323 QGND--CPAGVPGELLLRGPNLSPGYWRRPQATARAFTGD-------GWFRTGDIARRDA 373
Query: 903 DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVS 962
DG F++ R KD+ I G NVY A++E V + IR CAV+G+ +
Sbjct: 374 DGFFWVVDRKKDMFISGGENVYPAEIE-AVLADHPGIRE--CAVVGMADAQWG------- 423
Query: 963 DGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRV----VEEHGVTVASVKLIKPRTMSKTT 1017
+VG + I DG P+D + + ++ TR+ V +H V ++ PR T
Sbjct: 424 ----EVGYLAIV-PADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDAL----PR----TA 470
Query: 1018 SGKIKR 1023
SGK+++
Sbjct: 471 SGKLQK 476
|
Length = 488 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-20
Identities = 133/553 (24%), Positives = 216/553 (39%), Gaps = 116/553 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY E A+ AH L + +K GDRV L+ ++F+D F GC + VP+
Sbjct: 48 TYAEAARAAAAAAHALAAAG---VKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPI--- 101
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLP----WL-------HTD 612
+ RG Q +E+I ++ GA ++ +A+ +LP WL
Sbjct: 102 NTALRGPQ----LEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVP 157
Query: 613 SWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL----IHNVKLMR 668
+ + + QP D + +TSG+TG +KGV H ++ + +
Sbjct: 158 AGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE 217
Query: 669 KRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMS 725
+ VL + LP +H L F A++ G+T +L FS F W
Sbjct: 218 IG----ADDVLYTTLPLFHTNAL-NAFFQALLAGATYVLEPRFSASGF------WPAV-- 264
Query: 726 KYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785
H A + MV L S + ++ + P L
Sbjct: 265 ---RRHGATVTYLLGAMVSILLSQPARESDRA-HRVRVALGPGVPAA---------LHAA 311
Query: 786 FGLSQGV-MAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGY----VDQNDPDVDIRI 840
F GV + GYG E ++ +G +P GR+ G+ VD++D ++
Sbjct: 312 FRERFGVDLLDGYGSTETNFVIAVTHGSQRP---GSMGRLAPGFEARVVDEHDQEL---- 364
Query: 841 VNPETSEEIGEPGKEGEVWISS--PSA-GIGYWGREELSQITFRNELQNNRGRKYTRTGD 897
G+ GE+ + + P A GY+G E + +RN + TGD
Sbjct: 365 ----------PDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRN--------LWFHTGD 406
Query: 898 LG-RIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLST 956
R DG F RIKD I G N+ S +VE+ + S H AV VP E+
Sbjct: 407 RVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLS---HPAVAAAAVFPVPSEL--- 460
Query: 957 KGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRV----VEEHGVTVASVKLIKPR 1011
G D+V V+ +RDG ++ ++ + + R+ V + VA+
Sbjct: 461 -------GEDEVMAAVV--LRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAA------- 504
Query: 1012 TMSKTTSGKIKRF 1024
+ KT +GK+++F
Sbjct: 505 -LPKTENGKVQKF 516
|
Length = 542 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 3e-20
Identities = 81/329 (24%), Positives = 138/329 (41%), Gaps = 49/329 (14%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLI 692
DD +Q+TSG+TG KG ++H +++N + + T L +P YH G++
Sbjct: 199 DRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMV 258
Query: 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK 752
M G+ +++ F +PL L+ + + R T G F + L+ +
Sbjct: 259 LANLGCMTVGAC-LVYPNEAF--DPLATLQAVEEERCTALYGVPTMF---IAELDHPQRG 312
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
+FDLSS++ ++A P ++R ++ + V AYG
Sbjct: 313 --NFDLSSLRTGIMAGAPCPIEVMRRVMD------------------EMHMAEVQIAYGM 352
Query: 813 GK--PIIL------DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS 864
+ P+ L D + RV V + P +++++V+P+ G+ GE+ S
Sbjct: 353 TETSPVSLQTTAADDLERRVET--VGRTQPHLEVKVVDPDG--ATVPRGEIGELCTRGYS 408
Query: 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNV 923
GYW E + + + + TGDL + G I GR KD+II G N+
Sbjct: 409 VMKGYWNNPEATAESIDED-------GWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENI 461
Query: 924 YSADVEKTVESSTEHIRPGCCAVIGVPEE 952
Y ++E E H V GVP+E
Sbjct: 462 YPREIE---EFLFTHPAVADVQVFGVPDE 487
|
Length = 558 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 3e-20
Identities = 125/567 (22%), Positives = 198/567 (34%), Gaps = 152/567 (26%)
Query: 495 EEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRA 553
E+G +V TY EL +R+A L + GDRV + Y+P + V A +
Sbjct: 1 EDG-SVRTWTYSELAREVNRLASGL---AALGLGKGDRVGI-YMPMIPEAVVALLAIAKI 55
Query: 554 KVLPVPVLP---PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLH 610
+ VP+ PD + Q A +++ G+ R G +L
Sbjct: 56 GAIAVPIFSGFGPDAVATRLQD----------AEAKVLITADGFL---RRGKRVDLK--- 99
Query: 611 TDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR 670
DD + +TSG+TG KG + TH G
Sbjct: 100 ------------------------DDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGF 135
Query: 671 YKSTSKTVLVSWLPQYHDMGLIGG---LFTAMVGGSTAILFSPLT-FIKNPLLWLETMSK 726
+ W+ DMG + G + ++ G+T +L+ + LW + +
Sbjct: 136 CFDLKPGDRLLWIT---DMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRLW-RIVER 191
Query: 727 YRATH-SAGPNFAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTR 784
++ TH P +R L + D V DLSS++ L EP + ++ L
Sbjct: 192 HKVTHLGLSPTL-----IRALRAHGDAPVEGHDLSSLRVLGSTGEPW---DPESWLWLFE 243
Query: 785 PFG--------LSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDV 836
G S G G L V + +PI C + + P +
Sbjct: 244 RVGGGRAPIINYSGGTEISGGILG--NVPI-------RPI-------KPCSF-NGPSPGM 286
Query: 837 DIRIVNPETSEEIGEPGKEGEVWISSPSAGI--GYWGREELSQITFRNELQNNRGRKYTR 894
D +V+ + GE G E+ + +P G+ G+W E +Y
Sbjct: 287 DADVVDEDGRPVRGEVG---ELVVRAPWPGMTRGFWRDPE----------------RYLE 327
Query: 895 T-----------GDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG 942
T GD + DG ++I GR D I VAG+ V A++E + H
Sbjct: 328 TYWSRFPGVWVHGDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVL---NSHPAVA 384
Query: 943 CCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTV 1002
A IGVP+ V KG +V ++ G + + V + G
Sbjct: 385 EAAAIGVPDPV---KG---------EAIVCFVVLKPGVTPSAALEAELADHVGDALG--- 429
Query: 1003 ASVKLIKPR------TMSKTTSGKIKR 1023
K +PR + KT +GKI R
Sbjct: 430 ---KPFRPREVHFVSDLPKTRNGKIMR 453
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 6e-20
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 14/200 (7%)
Query: 1201 VSVMLILPAYLSVSAFTTLVSAPQTLLDERPWLNYMFSLTFAPLAWILCIFATCISITIF 1260
+ ++L F +V Q L D W +A + F +
Sbjct: 485 LRIILPFLLVQWAMLFALVVLDLQALDDYTEWGAVALLAALILMAVGVGAFLILVERKWL 544
Query: 1261 GNSFLRPNYTLNPEVSIWSADFVKW-----WALYKVHEVSCKVLAVYLRGTVFLNWWFEM 1315
L+P E +WS W W LY+ V+ RGT FL +
Sbjct: 545 VFGRLKPQ-----EHPLWSPFV--WLHELHWKLYES--VAVPNFLRPFRGTPFLPAILRL 595
Query: 1316 LGAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVG 1375
LG K+G V +D D+T+ LV IGD + ++EG++IQ+H ++ V+ + I ++G
Sbjct: 596 LGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLG 655
Query: 1376 PYAVIQKGSVIGEEAEVAPL 1395
P A++ G V+GE + + P
Sbjct: 656 PGAIVLYGVVMGEGSVLGPD 675
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 1e-19
Identities = 114/460 (24%), Positives = 173/460 (37%), Gaps = 89/460 (19%)
Query: 527 IKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP--PDPLQRGGQALLKIENISKSCG 584
+ PGDRV L +FV A RA ++ VP+ P P QR S++ G
Sbjct: 65 LLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQR---------VRSQAAG 115
Query: 585 AVAIL---STIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLL------AENVVCFTES--Q 633
A +L + WP + DS + T +
Sbjct: 116 ARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLR 175
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
PDD + FT G+TG K V TH + +V+ + Y+ + + V+ +P YH GLI
Sbjct: 176 PDD-AMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA 234
Query: 694 GLFTAMVGGSTAIL-----FSPLTFIKNPLLWLETMSKYRAT-HSAGPNFAFELMVRRLE 747
L + G +L FS TF W + + AT ++A P L+ R
Sbjct: 235 ALLATLASGGAVLLPARGRFSAHTF------W-DDIKAVGATWYTAVPTIHQILLERAAT 287
Query: 748 SSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVS 807
+ ++++F+ + P+ T + L F AP V
Sbjct: 288 EPSGRKP----AALRFIRSCSAPLTAETAQ---ALQTEFA------AP----------VV 324
Query: 808 CAYG------QGKPIILDWQGR-----VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEG 856
CA+G Q ++ G+ V G V ++ IRIV + G G
Sbjct: 325 CAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST-GAQIRIVGSDGLPL--PAGAVG 381
Query: 857 EVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDL 915
EVW+ + GY G ++ F + + RTGDLG + G I GRIK+L
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANFTD--------GWLRTGDLGSLSAAGDLSIRGRIKEL 433
Query: 916 IIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEV 953
I G + VE + S P AV GVP+++
Sbjct: 434 INRGGEKISPERVEGVLAS-----HPNVMEAAVFGVPDQL 468
|
Length = 534 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-19
Identities = 99/472 (20%), Positives = 172/472 (36%), Gaps = 150/472 (31%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T++ELD S++A +L ++ GDRV L+
Sbjct: 3 TFQELDQRVSQLAEQLAAL---GVRRGDRVALL--------------------------- 32
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
+K+ +L + + +R+G LP L+ + + LA
Sbjct: 33 ----------------AKNSIEFLLL----FLALLRLG-AVVLP-LNPRLPQEELQQQLA 70
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVL---- 679
+ D + FTSGSTG K V+ T G + + + S L
Sbjct: 71 DLQPDL-----DRPATIIFTSGSTGKPKAVVHTWGNHLASAR--------GSAENLGLTP 117
Query: 680 -VSW---LPQYHDMGLIGGLFTAM---VGGSTAILFSPLTFIKNPLLWLETMSKYRATH- 731
+W LP +H + GL M + G +L + E + + TH
Sbjct: 118 DDNWLLSLPLFH----VSGLAIVMRSLLAGGALVLPDK----FDAEAIAEALENHGVTHI 169
Query: 732 SAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQG 791
S P ++RL S LSS++ +++ P+ + +++ +G
Sbjct: 170 SLVP-----TQLQRLLESLGARW---LSSLRAVLLGGAPIPPSLLEQ--------ARQRG 213
Query: 792 V-MAPGYGLAENC---------VFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIV 841
+ + P YG+ E F++ GKP+ P ++RIV
Sbjct: 214 IPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL-----------------PGRELRIV 256
Query: 842 NPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI 901
NP+ GE+ + PS +GY + L+ + + TGDLG +
Sbjct: 257 NPQD----------GEILVRGPSLFLGYLPQGGLTPPLDEDG--------WFHTGDLGYL 298
Query: 902 I-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
+G ++ GR DLII G N+Y ++E + + AV+GVP++
Sbjct: 299 DAEGYLYVLGRRDDLIISGGENIYPEEIEAVLL-QHPAVEE--AAVVGVPDD 347
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-19
Identities = 116/444 (26%), Positives = 189/444 (42%), Gaps = 84/444 (18%)
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL---MRKRYKSTSKTVL 679
A V C D L L +TSG+TG KGV+ GG + V L MR Y V
Sbjct: 209 ARPVDCVPVESTDPLYIL-YTSGTTGKPKGVVRDTGG--YAVALKWSMRNIYGIKPGDVF 265
Query: 680 VSWLPQYHDMGLIGG----LFTAMVGGSTAILFSPL-TFIKNPLLWLETMSKYRATHSAG 734
+ D+G + G ++ ++ G+T +L+ + + + +Y
Sbjct: 266 WA----ASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFT 321
Query: 735 PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
A +R+ + + ++ +DLSS++ L +A E + T++ + + +
Sbjct: 322 APTAIR-AIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLE---------WIEKTLGV 371
Query: 795 P----------GYGLAENCVFVSC----AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRI 840
P G+ + NCV + GKP+ GY D+++
Sbjct: 372 PVIDHWWQTETGWPITANCVGLELLPIKPGSPGKPV---------PGY--------DVQV 414
Query: 841 VNPETSEEIGEPGKEGEVWIS---SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGD 897
++ ET EE+G PG+ G + I P + WG +E F+ L N+ Y TGD
Sbjct: 415 LD-ETGEELG-PGELGNIVIKLPLPPGCLLTLWGDDER----FKK-LYLNKFPGYYDTGD 467
Query: 898 LGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLST 956
G DG F+ GR D+I VAG + + ++E ES +H CAV+GV +E+
Sbjct: 468 SGYKDEDGYLFVMGRTDDVINVAGHRLSTGEME---ESVLKHPDVAECAVVGVRDEL--- 521
Query: 957 KGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKP-RTMSK 1015
G +GLVV+ +D +D D +EN +V E VA+ + + + + K
Sbjct: 522 ------KGQVPLGLVVL---KDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPK 572
Query: 1016 TTSGKIKRFECLKQFVDGTLNTVP 1039
T SGKI R L++ DG P
Sbjct: 573 TRSGKILR-RTLRKIADGEDYKDP 595
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 4e-19
Identities = 97/481 (20%), Positives = 186/481 (38%), Gaps = 83/481 (17%)
Query: 492 WINEEGVAVNQS----TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547
+++ + +A+ TY++L S++A L+ +K G+R+ ++ L+++
Sbjct: 13 YLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELN--VKKGERIAILSQNSLEYIVLL 70
Query: 548 FGCMRAKVLPVPV---LPPDPLQRGGQALLKIENISKSCG----AVAILSTIGYHSAVRV 600
F + + + VP+ L + L LK + LS RV
Sbjct: 71 FAIAKVECIAVPLNIRLTENELIFQ----LKDSGTTVLFVEKTFQNMALSMQKVSYVQRV 126
Query: 601 GSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL 660
+ + K + + F E + +TSG+TG KG ++T +
Sbjct: 127 ------------ISITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENM 174
Query: 661 ----IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFT--AMVGGSTAILFSPLTFI 714
++N + T + LP +H G+ GLF + G I+ P F
Sbjct: 175 FWNALNNTFAI----DLTMHDRSIVLLPLFHIGGI--GLFAFPTLFAGGVIIV--PRKF- 225
Query: 715 KNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQT 774
P L + K++ T G + L + + +L S+++ P +
Sbjct: 226 -EPTKALSMIEKHKVTVVMGVPTIHQ----ALINCSKFETT-NLQSVRWFYNGGAPCPEE 279
Query: 775 TVKRFVELTRPFGLSQGVMAPGYGLAENC--VFVSCAYGQGKPIILDWQGRVCCGYVDQN 832
++ F++ FG G+G+ E VF ++ + R G + +
Sbjct: 280 LMREFIDRGFLFG-------QGFGMTETSPTVF----------MLSEEDARRKVGSIGKP 322
Query: 833 DPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKY 892
D +++ ++ E G+ GE+ I P+ YW R + ++ T ++ +
Sbjct: 323 VLFCDYELIDENKNKV--EVGEVGELLIRGPNVMKEYWNRPDATEETIQD--------GW 372
Query: 893 TRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPE 951
TGDL R+ DG +I GR K++II G N+Y +VE+ + + AV+G
Sbjct: 373 LCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVIN---KLSDVYEVAVVGRQH 429
Query: 952 E 952
Sbjct: 430 V 430
|
Length = 496 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-19
Identities = 86/347 (24%), Positives = 128/347 (36%), Gaps = 64/347 (18%)
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
+ + PDD+ T G+TG K THG + N L +
Sbjct: 201 GDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG 260
Query: 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTF-----IKNPLLWLETMSKYRATH-SAGPN 736
LP +H L+ + G+ +L +P + I N W + + +YR S P
Sbjct: 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIAN--FW-KIVERYRINFLSGVPT 317
Query: 737 FAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM-AP 795
L+ V D+SS+++ + A P+ VE+ R F + GV
Sbjct: 318 VYAALLQV-------PVDGHDISSLRYALCGAAPLP-------VEVFRRFEAATGVRIVE 363
Query: 796 GYGLAENCVFVSCAY--GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG--- 850
GYGL E S G+ + G V P +R+V ++ G
Sbjct: 364 GYGLTEATCVSSVNPPDGERRI-----------GSVGLRLPYQRVRVV---ILDDAGRYL 409
Query: 851 ---EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNR---GRKYTRTGDLGRI-ID 903
+ G + I+ P+ GY N + TGDLGRI D
Sbjct: 410 RDCAVDEVGVLCIAGPNVFSGY-----------LEAAHNKGLWLEDGWLNTGDLGRIDAD 458
Query: 904 GKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVP 950
G F++TGR KDLII G N+ A +E E+ H A +G P
Sbjct: 459 GYFWLTGRAKDLIIRGGHNIDPAAIE---EALLRHPAVALAAAVGRP 502
|
Length = 632 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 4e-19
Identities = 85/330 (25%), Positives = 131/330 (39%), Gaps = 50/330 (15%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
PDDL T G+TG K +H + N + VL++ LP +H G I
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLL----WLETMSKYRATH-SAGPNFAFELMVRRLES 748
+ G+T +L +P F +NP + W + + +YR T SA P ++ L+
Sbjct: 61 TGLAPLARGATVVLPTPSGF-RNPAVVANFW-KIVERYRVTLLSAVPT----VLAALLQV 114
Query: 749 SKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA-PGYGLAENCVFVS 807
D+SS+++ + A P+ +RF +T GV GYG+ E +
Sbjct: 115 PLGDA---DISSLRYALTGAAPLPVEVARRFEAVT-------GVPVVEGYGMTEGTGVSA 164
Query: 808 C--AYGQGKPIILDWQGRVCCGYVDQNDP--DVDIRIVNPETSE-EIGEPGKEGEVWISS 862
G +P G V P V + ++ + PG+ G + I
Sbjct: 165 INPRGGPRRP-----------GSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRG 213
Query: 863 PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGR 921
P+ GY + + TGDLGRI DG ++TGR KDLII G
Sbjct: 214 PNVFPGYLNDAHNAGARL--------EDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGH 265
Query: 922 NVYSADVEKTVESSTEHIRPGCCAVIGVPE 951
N+ +E E+ H A +G P+
Sbjct: 266 NIDPQMIE---EALLRHPAVALAAAVGRPD 292
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 9e-19
Identities = 94/426 (22%), Positives = 158/426 (37%), Gaps = 114/426 (26%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLP 562
+Y ELD ++++A +L R + PGDRV V + D V A ++A VP+ P
Sbjct: 14 SYAELDERSNQLAARL---RALGVGPGDRVG-VLLERSADLVAALLAILKAGAAYVPLDP 69
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLL 622
P +R ++ + + +L+
Sbjct: 70 SYPAER-------LQYMLEDAEPALLLTD------------------------------- 91
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
PDDL ++ +TSGSTG KGV ++H L++ + M +R + L++
Sbjct: 92 -----------PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAV 140
Query: 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH-SAGPNFAFEL 741
D+ ++ L ++ G+T ++ S T +++P ++ R T A P A
Sbjct: 141 TTISFDISVL-ELLLPLLSGATVVIASAET-VRDPERLARLIADERITIMQATP--ATWR 196
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801
M+ L + S+ L E + + +R + L M YG E
Sbjct: 197 ML--LAAGWRG-----RESLTAL-CGGEALPRDLAERLLSTGAE--LWN--M---YGPTE 241
Query: 802 NCVFVSCAYGQ--------GKPI------ILDWQGRVCCGYVDQNDPDVDIRIVNPETSE 847
++ +CA G+PI +LD +
Sbjct: 242 TTIWSTCARVTAADGPVTIGRPIANTQVYVLDEDLQ----------------------PV 279
Query: 848 EIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKF 906
G P GE++I GY GR EL+ F + ++ G + RTGDL R DG+
Sbjct: 280 PPGVP---GELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRL 336
Query: 907 FITGRI 912
GR
Sbjct: 337 EYLGRA 342
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-18
Identities = 80/297 (26%), Positives = 132/297 (44%), Gaps = 42/297 (14%)
Query: 628 CFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYH 687
+PDD + F+SGS G+ KGVM++H ++ N++ + + + V++S LP +H
Sbjct: 775 YGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834
Query: 688 DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWL---ETMSKYRATHSAG-PNFAFELMV 743
GL L+ ++ G + +P L + ++K+RAT G P F L +
Sbjct: 835 SFGLTVTLWLPLLEGIKVVYHP------DPTDALGIAKLVAKHRATILLGTPTF-LRLYL 887
Query: 744 RRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENC 803
R K+ +S++ ++ AE ++ F E FG+ + GYG E
Sbjct: 888 R-----NKKLHPLMFASLRLVVAGAEKLKPEVADAFEE---KFGIR---ILEGYGATETS 936
Query: 804 --VFVSCAYGQGKPIILDWQGRVCC----GYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857
V+ P +L + G V P V +RIV+PET EE+ PG++G
Sbjct: 937 PVASVNL------PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEEL-PPGEDGL 989
Query: 858 VWISSPSAGIGYWGREELSQITFRNE-LQNNRGRKYTRTGDLGRIIDGKF-FITGRI 912
+ I P GY G E + E +++ G + TGD G + + F IT R
Sbjct: 990 ILIGGPQVMKGYLGDPEKT-----AEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRY 1041
|
Length = 1146 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 3e-18
Identities = 118/544 (21%), Positives = 203/544 (37%), Gaps = 137/544 (25%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ +L ++R+A+ L R+ ++ GDRV + + A +
Sbjct: 8 TFGQLKDASNRLANAL---RELGVERGDRVGVYLPQSPETAIAHLAVYKL---------- 54
Query: 564 DPLQRGGQALLKIENISKSCGAVAI-LSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLL 622
GAV++ LS + AV +++S
Sbjct: 55 --------------------GAVSVPLSVLFGPDAVE-------------HRLRDS---- 77
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
V T+ DD L +TSG+TG KG + H L+ ++ + ++ + V W
Sbjct: 78 -GARVLVTDG-SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFW 135
Query: 683 LPQYHDMGLIGGLFTAMV----GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFA 738
P D IGGL ++ G + + F +P M +Y T++ P A
Sbjct: 136 TPA--DWAWIGGLLDVLLPALYFGVPVVAYRMQRF--DPERAFALMRRYGVTNAFLPPTA 191
Query: 739 FELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT----RPFGLSQGVMA 794
++M RR+ S + +DL ++ + E + + EL GL+ +
Sbjct: 192 LKMM-RRVGSERA---RYDL-RLRAVASGGESLGE-------ELLEWARDELGLT---VN 236
Query: 795 PGYGLAE-NCVFVSCA-YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852
YG E N V +CA G +P G + + P ++ +V+ P
Sbjct: 237 EFYGQTEANLVVGNCAALGPARP-----------GSMGKPVPGHEVAVVDDAGRPVP--P 283
Query: 853 GKEGEVWISSPSAG--IGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFIT 909
G+ GE+ + P +GYW E + F + + TGDLGR DG +
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD--------WLLTGDLGRRDADGYLWFK 335
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVG 969
GR D+I +G + A++E+ + +H AV+GVP+ + G
Sbjct: 336 GRADDVIKSSGYRIGPAEIEECL---LKHPAVLEAAVVGVPDP--------------ERG 378
Query: 970 LVVIAEV--RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGKI 1021
+V A V +G ++ ++ V PR + TT+GKI
Sbjct: 379 EIVKAFVVLAEGVEPSDELATELQELVKSRLA------AHEYPREIEFVDELPMTTTGKI 432
Query: 1022 KRFE 1025
+R E
Sbjct: 433 RRRE 436
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-17
Identities = 115/420 (27%), Positives = 179/420 (42%), Gaps = 99/420 (23%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLI 692
PDD +Q+TSG+TG KG +TH +++N + + K T + L +P YH G++
Sbjct: 197 DPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMV 256
Query: 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-----------PNFAFEL 741
G + G+T + F +PL L + + R T G P+FA
Sbjct: 257 LGNLACVTHGATMVYPGEG-F--DPLATLAAVEEERCTALYGVPTMFIAELDHPDFA--- 310
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801
FDLSS++ ++A P +KR ++ +S+ +A YG+ E
Sbjct: 311 -------------RFDLSSLRTGIMAGSPCPIEVMKRVIDK---MHMSEVTIA--YGMTE 352
Query: 802 NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861
VS P+ RV V + P ++++IV+PET E + G++GE+
Sbjct: 353 -TSPVSTQTRTDDPLEK----RV--TTVGRALPHLEVKIVDPETGETV-PRGEQGELCTR 404
Query: 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID--GKFFITGRIKDLIIVA 919
S GYW E + + + TGDL ++D G I GRIKD+II
Sbjct: 405 GYSVMKGYWNDPEKTAEAIDAD-------GWMHTGDLA-VMDEEGYVNIVGRIKDMIIRG 456
Query: 920 GRNVYSADVEKTVESSTEHIRPGC--CAVIGVP-----EEVLSTKGISVSDGSDQVGLVV 972
G N+Y ++E E H P V+GVP EEV + I + G+ +
Sbjct: 457 GENIYPREIE---EFLYTH--PKIQDVQVVGVPDEKYGEEVCAW--IILRPGAT----LT 505
Query: 973 IAEVRD---GKPVDKDVIENIKT----RVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFE 1025
+VRD GK I + K R V+E +TV +GKI++F+
Sbjct: 506 EEDVRDFCRGK------IAHYKIPRYIRFVDEFPMTV---------------TGKIQKFK 544
|
Length = 559 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 5e-17
Identities = 94/329 (28%), Positives = 146/329 (44%), Gaps = 49/329 (14%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR---KRYKSTSKTV--LVSWLPQYHD 688
PDD+ LQ+T G+TG KG M+THG L V + K ++T V ++ LP +H
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHI 250
Query: 689 MGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVR 744
L L ++ G L F ++ + + RAT G P L
Sbjct: 251 YALTVILLRSLRRGDLISLHQRFDVAAVFRD-------IEEKRATVFPGVPTMWIAL--- 300
Query: 745 RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCV 804
++ + DLSS+ + P+ V F E R GL + G+G+ E
Sbjct: 301 ---ANDPSLEKRDLSSLATIGSGGAPL-PVEVANFFE--RKTGLK---LKSGWGMTE--- 348
Query: 805 FVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS 864
+C+ G G P +G G + P +++ +V+ + ++ PG+ GE+ I P+
Sbjct: 349 --TCSPGTGHPP----EGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPN 402
Query: 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNV 923
GYW R E S F G ++ TGD+G + DG FF+ R KD+II G NV
Sbjct: 403 VTRGYWNRPEESAEAFV-------GDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNV 454
Query: 924 YSADVEKTVESSTEHIRPGCCAVIGVPEE 952
Y +E+ + EH VIG+P++
Sbjct: 455 YPQMIEQAI---YEHPGVQEVIVIGIPDQ 480
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-16
Identities = 95/445 (21%), Positives = 163/445 (36%), Gaps = 89/445 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ ++ A RIA L + ++PGDR+ ++ +++ A A + VP+ P
Sbjct: 8 TWAQVADQARRIAAAL---QSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYP- 63
Query: 564 DPLQRGGQALLKIENISKSCGAVAIL-----------STIGYHSAVRVGSWPNLPWLHTD 612
I + + A A+ + + + P
Sbjct: 64 ------TLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILF-PYSTLKDHY 116
Query: 613 SW--VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR 670
W + + L + P+DL + +TSG+TG KGVM++ G + +
Sbjct: 117 KWDDLLAATEPLQGRPLPE----PEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEI 172
Query: 671 YKSTSKTVLVSWLPQYH--DMGLIGGLFTAMVGGSTAILFSPLTFIKN------------ 716
T L+S+LP H + ++ G G + S TF +
Sbjct: 173 IGLTPNDRLLSYLPLAHIAERVIVEGGSLY-SGAEVFFVESLDTFAADLQRARPTVFFSV 231
Query: 717 PLLWLETMSK-YRATHSAGPNFAFELMVRR-LESS--KDKVR-SFDLSSMKFLMVAAEPV 771
P LW +K + + P L+++ + SS K K+ L + A P+
Sbjct: 232 PRLW----TKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPM 287
Query: 772 RQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQ 831
+ + +L GL + GYG+ EN + + Y G G V +
Sbjct: 288 PPALIAWYRKL----GLP---ICEGYGMTENFAYSTLNYP----------GDRRIGTVGK 330
Query: 832 NDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRK 891
P V+++I ++GE+ I SP GY+ E + F +
Sbjct: 331 PIPGVELKI------------SEDGEILIRSPGLMSGYYKDPEKTAEAFTED-------G 371
Query: 892 YTRTGDLGRI-IDGKFFITGRIKDL 915
+ TGD G I DG ITGR+K+L
Sbjct: 372 WLHTGDKGEIDEDGFLKITGRVKEL 396
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-16
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 29/231 (12%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY EL A+ IA L + + PGD V +V G + + A G + A VP+ P
Sbjct: 14 TYGELARRANAIAAALRAAG---VAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPD 70
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
P +R I GA A+L+ + P+L + D+ S
Sbjct: 71 QPAER-------RAAILARAGARAVLTD---PGLAQPEEAPDLLVVADDAAAAESPAPPP 120
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK--TVLVS 681
PDDL ++ FTSGSTG+ KGVMITH ++ + + +R+ + +S
Sbjct: 121 ------PRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALS 174
Query: 682 WLPQYHDMGL--IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRAT 730
L + D+ + I G +A G A++ ++P W E + ++ T
Sbjct: 175 AL--HFDLSVYDIFGALSA--GA--ALVLPDEARRRDPDHWAELVQRHGVT 219
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 4e-16
Identities = 85/346 (24%), Positives = 149/346 (43%), Gaps = 79/346 (22%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLI------HNVKLMRKRYKSTSKTVLVSWLPQY- 686
D L L +T G+TG KG T ++ + V ++ +V +S+LP++
Sbjct: 208 LDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG-----GEDSVFLSFLPEFW 262
Query: 687 ---HDMGLIGGLFTAMVGGSTAILFS---PLTFIKNPLLWLETMSKYRATHSAGP-NFAF 739
+ GL+ LF+ G+T +L + + F + + +YR T + + A
Sbjct: 263 IAGENFGLLFPLFS----GATLVLLARWDAVAF-------MAAVERYRVTRTVMLVDNAV 311
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTV---KRFVELTRPFGLSQGVMAPG 796
ELM + +DLSS++ + V + V++ +R+ LT V+A
Sbjct: 312 ELM------DHPRFAEYDLSSLRQVRVVSF-VKKLNPDYRQRWRALT------GSVLAEA 358
Query: 797 -YGLAEN--CVFVSCAYGQGKPIILDWQGR-VCCGY-VDQNDPDVDIRIVNPETSEEIGE 851
+G+ E C + + D + V G V P + +I + ET GE
Sbjct: 359 AWGMTETHTCDTFTAGFQDDD---FDLLSQPVFVGLPV----PGTEFKICDFET----GE 407
Query: 852 P---GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFI 908
G EGE+ + +PS GYW + E + R+ + TGD+G ID + F+
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRD--------GWLHTGDIG-KIDEQGFL 458
Query: 909 --TGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
GR K+++ V G +V+ ++VE + +H AV+G P+
Sbjct: 459 HYLGRRKEMLKVNGMSVFPSEVEALL---GQHPAVLGSAVVGRPDP 501
|
Length = 567 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 4e-16
Identities = 132/538 (24%), Positives = 207/538 (38%), Gaps = 132/538 (24%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY++L A+RIAH +L V PG+RVLL V + ++A + V +P
Sbjct: 62 TYQDLLDRANRIAH-VLVEDLGV-VPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMP- 118
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
LL+ + ++ I
Sbjct: 119 ---------LLRAKELTTIVDKARI----------------------------------- 134
Query: 624 ENVVCFTE-SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY-KSTSKTVLVS 681
+ +C + DD+ + FTSG+TG KG M H ++ + + T V +
Sbjct: 135 THALCDKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIG 194
Query: 682 WLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFEL 741
P GL G + + G++A+L T P L L+ + ++RAT A+
Sbjct: 195 SPPLAFTFGLGGLVLFPLRFGASAVLLEQAT----PPLLLKAIQEHRATILFTAPTAYRA 250
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801
M+ KV++FD+SS++ + A E + + + E T GL + G G E
Sbjct: 251 ML-------IKVKAFDISSLRKCVSAGETLPAKVWQDWYERT---GLK---IIDGIGATE 297
Query: 802 NC-VFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860
+F+S KP G+ GY + RIV+ + G GE
Sbjct: 298 MLHIFISANEENAKP---GATGKPVPGY--------EARIVDDQ-----GNEVPRGEA-- 339
Query: 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTR-----TGDLGRI-IDGKFFITGRIKD 914
GR + T L + R ++Y R TGD+ R DG F R D
Sbjct: 340 ----------GRLAVRGPTGCRYLDDERQQEYVRDGWNVTGDIFRQDEDGYFHYVARSDD 389
Query: 915 LIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIA 974
+I+ AG N+ + +VE + H CAVIGVP+E + G +V A
Sbjct: 390 MIVSAGYNIAAPEVEDAL---LTHPDVAECAVIGVPDE--------------ERGQIVCA 432
Query: 975 EV--RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRT------MSKTTSGKIKRF 1024
+ RDG + + E ++ V +A K PR + KT +GKI+RF
Sbjct: 433 HIVLRDGTKATELLAERLQDFVKA----VIAPYKY--PREINFVDALPKTQTGKIQRF 484
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 1e-15
Identities = 108/406 (26%), Positives = 174/406 (42%), Gaps = 76/406 (18%)
Query: 636 DLCFLQFTSGSTGDAKGVMITHGGLIHNV--KLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
DLC L F+SG+TG +KGVM+TH L+ N+ L + + V + +P +H G+ G
Sbjct: 185 DLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITG 244
Query: 694 GLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSK 750
+ ++ F TF+ N L+ E +FA + L K
Sbjct: 245 ICCATLRNKGKVVVMSRFELRTFL-NALITQEV------------SFAPIVPPIILNLVK 291
Query: 751 DK-VRSFDLSSMKF--LMVAAEPVRQTTVKRFVELTRPFGLSQGV-MAPGYGLAE-NCVF 805
+ V FDLS +K +M AA P+ + F E P GV + YGL E +C+
Sbjct: 292 NPIVEEFDLSKLKLQAIMTAAAPLAPELLTAF-EAKFP-----GVQVQEAYGLTEHSCIT 345
Query: 806 VSCAYGQGKPIILDWQGRVCCGYVDQND-----PDVDIRIVNPETSEEIGEPGKEGEVWI 860
++ G P +G G +N P+++++ ++P+T + + GE+ +
Sbjct: 346 LT----HGDPE----KGH---GIAKKNSVGFILPNLEVKFIDPDTGRSLPK-NTPGELCV 393
Query: 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVA 919
S GY+ +E + T + + TGD+G I DG FI RIK+LI
Sbjct: 394 RSQCVMQGYYNNKEETDRTIDED-------GWLHTGDIGYIDDDGDIFIVDRIKELIKYK 446
Query: 920 GRNVYSADVEKTV--ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR 977
G V A++E + S E AV+ +P+E G VVI
Sbjct: 447 GFQVAPAELEAILLTHPSVEDA-----AVVPLPDE---------EAGEIPAACVVIN--P 490
Query: 978 DGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
K ++D++ + V H V V+ + ++ K+ SGKI R
Sbjct: 491 KAKESEEDILNFVAANVA--HYKKVRVVQFVD--SIPKSLSGKIMR 532
|
Length = 546 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-15
Identities = 85/340 (25%), Positives = 145/340 (42%), Gaps = 58/340 (17%)
Query: 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLI-HNVKLMR--KRYKSTSKTVLVSWLPQ 685
E+ LC+ TSG+TG+ KGV+ +H L+ H + S S TVL +P
Sbjct: 159 LDENTAAGLCY---TSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPV-VPM 214
Query: 686 YHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVR 744
+H G + A + G+ +L +P L+ + + + T SAG P L+
Sbjct: 215 FHVNAW-GLPYAATMVGAKLVLPGRYL---DPASLLDLIEEEKVTVSAGVPTIWLGLL-N 269
Query: 745 RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCV 804
LE++ DLSS++ ++V + ++ +++ E V+ +G+ E
Sbjct: 270 YLEANGK-----DLSSLRRVVVGGSALPRSLIEKLEERGVE------VIH-AWGMTETSP 317
Query: 805 FVSCAYGQGKPIILDW-----------QGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853
+ + KP ++D QGR G V++RIV+ E +E +
Sbjct: 318 LGT--VSRLKPHLVDLPEEEKLELRAKQGRPVPG--------VELRIVDDEGNELPWDGK 367
Query: 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRI 912
GE+ + P Y+ E ++ R+ + RTGD+ I DG IT R
Sbjct: 368 TVGELVVRGPWVTGSYYKDPEKTEELTRD--------GWFRTGDVAVIDEDGYIQITDRA 419
Query: 913 KDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
KD+I G + S ++E + + + AV+GVP E
Sbjct: 420 KDVIKSGGEWISSVELENAL-MAHPAVAE--AAVVGVPHE 456
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-15
Identities = 121/463 (26%), Positives = 196/463 (42%), Gaps = 55/463 (11%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY +++ + R+A L K I+ GD V+L+ +FV AF G R
Sbjct: 52 TYADVELLSRRVAAGL---HKLGIRQGDVVMLLLPNCPEFVLAFLGASR---RGAVTTTA 105
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR-VGSWPNLPWLHTDSWVKN----S 618
+P + I +K+ GA I++ Y ++ + + + D + S
Sbjct: 106 NPFYTPAE----IAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161
Query: 619 KNLLAENVVCFTES-QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM----RKRYKS 673
+ A+ PDD+ L ++SG+TG KGVM+TH GL+ +V
Sbjct: 162 ELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF 221
Query: 674 TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSA 733
S V++ LP +H L L + G+ AIL P F L LE + +++ T
Sbjct: 222 HSDDVILCVLPMFHIYSLNSVLLCGLRVGA-AILIMP-KFEIGAL--LELIQRHKVT--I 275
Query: 734 GPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFG--LSQG 791
P F +++ +S V +DLSS++ ++ A P+ + EL F L
Sbjct: 276 AP-FVPPIVLAIAKS--PVVEKYDLSSIRMVLSGAAPLGK-------ELEDAFRAKLPNA 325
Query: 792 VMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGE 851
V+ GYG+ E ++ K G CG V +N +++IV+PET +
Sbjct: 326 VLGQGYGMTEAGPVLAMCLAFAKEPFPVKSG--SCGTVVRN---AELKIVDPETGASLP- 379
Query: 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITG 910
+ GE+ I P GY E + T + + TGD+G I D + FI
Sbjct: 380 RNQPGEICIRGPQIMKGYLNDPEATANTIDKD-------GWLHTGDIGYIDDDDELFIVD 432
Query: 911 RIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEV 953
R+K+LI G V A++E + S H AV+ + +EV
Sbjct: 433 RLKELIKYKGFQVAPAELEALLIS---HPSIADAAVVPMKDEV 472
|
Length = 537 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 4e-15
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 64/335 (19%)
Query: 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS---------TSKTVLVSW 682
P DL L +TSG+T KGVM ++G L +KS T+ L+
Sbjct: 146 VAPTDLVRLMYTSGTTDRPKGVMHSYGNL---------HWKSIDHVIALGLTASERLLVV 196
Query: 683 LPQYHDMGL-IGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSAGPNFAF 739
P YH + G+ VGG+ I F P L + ++R T A
Sbjct: 197 GPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAV-------LAAIERHRLT---CAWMA- 245
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799
+M+ R+ + D+ R FDL S+ + + E ++ ++ F + + YGL
Sbjct: 246 PVMLSRVLTVPDRDR-FDLDSLAWCIGGGEKTPESRIRDFTRVFT-----RARYIDAYGL 299
Query: 800 AENCVFVSCAYGQGKPIILDWQGRVC--CGYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857
E C +++ GR G + V+IRI + P +GE
Sbjct: 300 TETC---------SGDTLME-AGREIEKIGSTGRALAHVEIRIADGAGR--WLPPNMKGE 347
Query: 858 VWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLI 916
+ + P GYW E + F + + R+GD+G + + G ++T R KD+I
Sbjct: 348 ICMRGPKVTKGYWKDPEKTAEAFYGD--------WFRSGDVGYLDEEGFLYLTDRKKDMI 399
Query: 917 IVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPE 951
I G N+ S++VE+ + E + AVIGV +
Sbjct: 400 ISGGENIASSEVERVIYELPE-VAE--AAVIGVHD 431
|
Length = 497 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 4e-15
Identities = 104/442 (23%), Positives = 163/442 (36%), Gaps = 57/442 (12%)
Query: 502 QSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL-DFVDAFFGCMRAKVLPVPV 560
Q +Y ELD A +A L K IK GD + V +P + +F FF ++ V PV
Sbjct: 48 QWSYRELDQRADNLAAGL---TKLGIKQGDTAV-VQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 561 LPPDPL-------QRGGQALLKIENISKSCGAVAILSTIG-YHSAVRVGSWPNLPWLHT- 611
L + AL I+ + +R
Sbjct: 104 LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEAEL 163
Query: 612 DSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY 671
W+ AE V ++ D++ F Q + GSTG K + TH ++V+ +
Sbjct: 164 FLWL----ESPAEPVKF-PPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC 218
Query: 672 KSTSKTVLVSWLPQYHD--MGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA 729
T +T + LP H+ + G L GG + P +P + +++
Sbjct: 219 WLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDP-----SPTDCFPLIERHKV 273
Query: 730 THSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLS 789
T +A A L ++ S+ DLSS+K L V +R + FG
Sbjct: 274 TVTALVPPAVALWMQAASKSRA-----DLSSLKLLQVGGAKFSAAAARR---VPAVFGCQ 325
Query: 790 -QGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEE 848
Q V +G+AE V + II QGR PD ++R+V+
Sbjct: 326 LQQV----FGMAEGLVNYT-RLDDPAEIIFTTQGRPMS-------PDDEVRVVDDH--GN 371
Query: 849 IGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFF 907
PG+ G + P GY+ E + F E + TGDL R+ +G
Sbjct: 372 PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAE-------GFYYTGDLVRLTPEGYIV 424
Query: 908 ITGRIKDLIIVAGRNVYSADVE 929
+ GR KD I G + + ++E
Sbjct: 425 VVGRAKDQINRGGEKIAAEEIE 446
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 8e-15
Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 62/467 (13%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP- 562
+ EL A R+A L ++ GDRV + +++V F C R + V
Sbjct: 37 SRAELRALVDRLAAWLA---AQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTR 93
Query: 563 ------PDPLQRGGQALLKIENISKSCGAVAILSTIGYHS--------AVRVGSWPNLPW 608
L RG L + K AIL+ + + V + P
Sbjct: 94 YRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAA-DATPA 152
Query: 609 -LHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFT-SGSTGDAKGVMITHGGLIHNVKL 666
+ A + D L FT SG+T K V+ L+ + +
Sbjct: 153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARA 212
Query: 667 MRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSK 726
+ + Y VL++ LP G L A+ GG+ + F + +
Sbjct: 213 IARAYGYDPGAVLLAALPFCGVFGF-STLLGALAGGAPLVCEP--VFDAARTARA--LRR 267
Query: 727 YRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786
+R TH+ G + E++ R L+++ D S + A+ EL
Sbjct: 268 HRVTHTFGND---EMLRRILDTAG---ERADFPSARLFGFAS------FAPALGELA-AL 314
Query: 787 GLSQGVMAPG-YGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPET 845
++GV G YG +E V+ +P R+ G + P+ +R +P+
Sbjct: 315 ARARGVPLTGLYGSSEVQALVAL-----QPATDPVSVRIEGGGRPAS-PEARVRARDPQD 368
Query: 846 SEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DG 904
+ G+ GE+ I +PS GY + + ++ Y RTGDLG DG
Sbjct: 369 G-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDD-------GYFRTGDLGYTRGDG 420
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGV 949
+F R+ D + + G V A++E +E+ PG V+G
Sbjct: 421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEA-----LPGVAAAQVVGA 462
|
Length = 540 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 2e-14
Identities = 123/556 (22%), Positives = 211/556 (37%), Gaps = 77/556 (13%)
Query: 487 KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546
K T + AV + +Y ELD RIA L + + GD V +F
Sbjct: 38 KPALTAYRDGHGAVRRFSYRELDCRVDRIAVGL---ARLGVGRGDVVSFQLPNRWEFTAL 94
Query: 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGY-HSAVRVGSWPN 605
+ C R + P++P + R + L + N + S V G+ H+A+
Sbjct: 95 YLACARIGAVLNPLMP---IFRE-RELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSK 150
Query: 606 LPWLHTDSWVKNSKNLLAENVVCFTESQ---------------PDDLCFLQFTSGSTGDA 650
LP L + + + V+ E PDD+ L +TSG+TG+
Sbjct: 151 LPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEP 210
Query: 651 KGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSP 710
KGVM T L N+ +R + V++ P H G + GL ++ +TA+L
Sbjct: 211 KGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD- 269
Query: 711 LTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770
I NP E + + T + + R ++ S V S+ + A P
Sbjct: 270 ---IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPV-----PSLFTFLCAGAP 321
Query: 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVD 830
+ V+R EL G + +G+ EN A +P + G
Sbjct: 322 IPGILVERAWEL---LGAL---IVSAWGMTEN-----GAVTVTEPDDALEKASTTDG--- 367
Query: 831 QNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGR 890
+ P V++++++ ++ G+ G + + S GY R L+
Sbjct: 368 RPLPGVEVKVIDANGAKLS--QGETGRLLVRGCSNFGGYLKRPHLNSTD---------AE 416
Query: 891 KYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGV 949
+ TGDL +G I GR KD+II G N+ ++E + +H A++
Sbjct: 417 GWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLL---YQHPAVAQVAIVAY 473
Query: 950 PEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK-DVIENIKTRVVEEHGVTVASVKLI 1008
P+E L + +V VV + G +D ++ +K + V + +L
Sbjct: 474 PDERLGERACAV---------VVP---KPGCTLDFAAMVAFLKAQKVALQYI---PERLE 518
Query: 1009 KPRTMSKTTSGKIKRF 1024
+ T +GKI++F
Sbjct: 519 VVDALPATPAGKIQKF 534
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-14
Identities = 99/403 (24%), Positives = 146/403 (36%), Gaps = 65/403 (16%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
DDL +TSG+TG KGV + L M RY + V W D G
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYM--RYAIDLRDDDVFW--NIADPGWAY 142
Query: 694 GLFTAMVGG---STAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSK 750
GL+ A+ G +F F + + + T+ AG A+ ++ + +
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGF--TAENTYDVLERLGVTNFAGSPTAYRML---MAAGA 197
Query: 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY 810
D L ++ A EP+ V R+ + L + YG E + V +
Sbjct: 198 DAAARIKL-KLRVASSAGEPL-NPEVVRWFQAN----LGVTIH-DHYGQTETGMPVGNHH 250
Query: 811 GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE-EIGEPGKEGEVWISSPSAGI-G 868
+ G GY I +++ + GEPG+ SSP G
Sbjct: 251 ALAHEVRAGSMGLPLPGY--------RIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSG 302
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGRIKDLIIVAGRNVYSAD 927
YW E + + TGDL R DG F+ GR D+II AG + D
Sbjct: 303 YWDDPEKTAELIAGR--------WYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFD 354
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVI 987
VE + EH AV+GVP+ +G V VV+ E G ++
Sbjct: 355 VESAL---LEHPAVAEAAVVGVPDP---LRGEIVK------AFVVLKEGYAGSD---ELA 399
Query: 988 ENIKTRVVEEHGVTVASVKLIKPRT------MSKTTSGKIKRF 1024
E ++ V + PR + KT SGKI+RF
Sbjct: 400 EELQLFVKKRLS------AHAYPREVEFVPALPKTPSGKIQRF 436
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 3e-14
Identities = 136/591 (23%), Positives = 229/591 (38%), Gaps = 110/591 (18%)
Query: 475 LKHWGTHRITQKKT---LFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGD 531
L W K+ W+N +G V S + EL + + + A+ L S ++ GD
Sbjct: 12 LDQWADKEKAGKRPPNPALWWVNGKGDEVKWS-FRELGSLSRKAANVL--SGACGLQRGD 68
Query: 532 RVLLVY--VPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAIL 589
RV ++ VP V+ C+R + V P +Q + +L SK+ V
Sbjct: 69 RVAVILPRVPEWWLVNV--ACIRTGL----VFIPGTIQLTAKDILYRLQASKAKCIVTSD 122
Query: 590 STIGYHSAVRVGSWPNLPWLHT---------DSWVKNSKNLL---AENVVCFTESQPDDL 637
++ P L T D W+ N K LL + C +++ +
Sbjct: 123 ELAPAVDSIASEC----PSLKTKLLVSEHSRDGWL-NFKELLKEASTEHTC-VKTKSQEP 176
Query: 638 CFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMG----LIG 693
+ FTSG+TG K +H L +K + RY + W D G I
Sbjct: 177 MAIYFTSGTTGFPKMAEHSHSSLGLGLK-VNGRYWLDLTPSDIMW--NMSDTGWIKAAIW 233
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV 753
LF+ + G+ + F +P + L+T+SKY T + ++V++ +
Sbjct: 234 SLFSPWIQGACVFVHHLPRF--DPKVILQTLSKYPITTFCSAPTVYRMLVQQ------DL 285
Query: 754 RSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG 813
S+ S++ + EP+ ++++ T GL + GYG E + CA +G
Sbjct: 286 TSYKFKSLRHCVTGGEPLNPEVLEQWKAQT---GLD---LYEGYGQTE--TGLICANFKG 337
Query: 814 ---KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS-SPSAGIG- 868
KP G + + P D++I++ + + PG EG++ I P+
Sbjct: 338 MKIKP-----------GSMGKASPPYDVQIIDDNGN--VLPPGTEGDIGIRVKPTRPFCL 384
Query: 869 ---YWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVY 924
Y E + T R + TGD G + DG F+ GR D+I +G +
Sbjct: 385 FSCYVDNPEKTAATIRGDFYI--------TGDRGIMDEDGYFWFVGRADDVINSSGYRIG 436
Query: 925 SADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDK 984
+VE + EH AV+ P+ + +G V VV+A D
Sbjct: 437 PFEVESAL---IEHPAVVESAVVSSPDPI---RGEVVK------AFVVLAP--QFLSHDP 482
Query: 985 DVIENIKTRVVEEHGVTVASVKLIKPRT------MSKTTSGKIKRFECLKQ 1029
+ + T+ ++EH V + PR + KT +GKIKR E +
Sbjct: 483 EQL----TKELQEH-VKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|163708 cd08152, y4iL_like, Catalase-like heme-binding proteins similar to the uncharacterized y4iL | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 8e-14
Identities = 59/291 (20%), Positives = 99/291 (34%), Gaps = 65/291 (22%)
Query: 1725 RGQLTIYDNI-----QGLPDHKIFHPGKCYPVIVRHSNSLSADDDARI-DARGAAIRIF- 1777
+ + T+ D++ QG +F YP ++R SN+ D + D RG AI++
Sbjct: 16 KAEFTVLDDLPPELAQG-----LFAEPGTYPAVIRFSNAPGDILDDSVPDPRGMAIKVLG 70
Query: 1778 ----SDLNGNTSSLLDLTLKTGNAFYARTIGDFA--TWLVCGLAAREEHVKRV------- 1824
L ++ D L F+AR D+ L+ + + K
Sbjct: 71 VPGEKLLPEEDATTQDFVLVNHPVFFARDAKDYLALLKLLARTTSLPDGAKAALSAPLRG 130
Query: 1825 --PHIRDAVWKSLRLS------DSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIG 1876
+ A +S L Y+S +RF D K+ + P
Sbjct: 131 ALRVLEAAGGESPTLKLGGHPPAHPLGETYWS--QAPYRFGDY---VAKYSVVP------ 179
Query: 1877 EDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQD 1936
S + L + + D + R LAD + F++Q+ D
Sbjct: 180 -ASPALPA---LTGKELDLTDDPDALREA--LADFLAEN-----DAEFEFRIQLC---TD 225
Query: 1937 EAMQDIALDCTKPWDEAEYPYIDVGEISID-QNLSTEES-----EKLEFNP 1981
I D + W EA P++ V I+I Q+ + + L FNP
Sbjct: 226 LEKMPIE-DASVEWPEALSPFVPVATITIPPQDFDSPARQRAFDDNLSFNP 275
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin. Length = 305 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 9e-14
Identities = 130/589 (22%), Positives = 223/589 (37%), Gaps = 129/589 (21%)
Query: 482 RITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL 541
K W +++G T+ +L +++ A+ + I GD V+L
Sbjct: 28 DEEPDKLALIWCDDDGEE-KIFTFGDLKDYSNKAANFF---KALGIGKGDTVMLTLKRRY 83
Query: 542 DFVDAFFGCMR--AKVLPVPVL--PPDPLQRGGQALLK-------------IENISKSCG 584
+F + + A +P + D + R A +K I+ + CG
Sbjct: 84 EFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECG 143
Query: 585 AVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTS 644
+ +L V VG W+ D ++N+ + DD+ + FTS
Sbjct: 144 SPTLL--------VLVGDPVPEGWIDFDKEIENASPDFERPTGN-DATCNDDILLVYFTS 194
Query: 645 GSTGDAKGVMITH------GGLI-----HNVKLMRKRYKSTSKTVLVSWLPQYHDMG--- 690
G+TG K M+ H G ++ NVK TV D G
Sbjct: 195 GTTGMPK--MVEHDHTYPLGHIVTAKYWQNVKEGGLHL-----TV--------ADTGWGK 239
Query: 691 -LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749
+ G L+ + G+ ++ F LL E + KY T P + +++
Sbjct: 240 AVWGKLYGQWIAGAAVFVYDYDKFDPKNLL--EKIEKYGVTTFCAPPTIYRFLIK----- 292
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFV-SC 808
+ + +DLSS+++ A EP+ F E T G+ + G+G E + + +
Sbjct: 293 -EDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKT---GIK---LMEGFGQTETTLTIATF 345
Query: 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI-SSPSAGI 867
+ + KP G + + P DI I++P+ E G+EGE+ I +S +
Sbjct: 346 PWMEPKP-----------GSMGKPSPGYDIDIIDPDGKS--CEVGEEGEIVIRTSDGKPL 392
Query: 868 G----YWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGRIKDLIIVAGRN 922
G Y+ E + + + Y TGD DG + GR DLI +G
Sbjct: 393 GLFMGYYRDPERTAEVWHDG--------YYHTGDTAWMDEDGYLWFVGRADDLIKSSGYR 444
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
+ +VE + +H CAV GVP+ + +G V + +V+ + +
Sbjct: 445 IGPFEVESAL---IQHPAVLECAVTGVPDPI---RGQVV-----KATIVLTKGYEPSEEL 493
Query: 983 DKDVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGKIKRFE 1025
K++ +++K VT A K PR + KT SGKI+R E
Sbjct: 494 KKELQDHVKK-------VT-APYK--YPRIIEFVDELPKTISGKIRRVE 532
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-13
Identities = 101/454 (22%), Positives = 168/454 (37%), Gaps = 80/454 (17%)
Query: 504 TYEELDANASRIAHKL----LTSRKPVIKPGDRVLLVYVPGLDF--VDAFFGCMRAKVLP 557
TY++L + R+A + L + P+I G ++ + AF G +++
Sbjct: 27 TYQQLKEQSDRLAAFIQKRILPKKSPIIVYG---------HMEPHMLVAFLGSIKSGHAY 77
Query: 558 VPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHT------ 611
+PV P +R IE I ++ G ++ T L L
Sbjct: 78 IPVDTSIPSER-------IEMIIEAAGPELVIHTAELSIDAVGTQIITLSALEQAETSGG 130
Query: 612 ----DSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM 667
D VK DD ++ +TSGSTG+ KGV I+H L+ M
Sbjct: 131 PVSFDHAVKG-----------------DDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWM 173
Query: 668 RKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKY 727
+ + ++ P D+ ++ L+ + G T N L E + K
Sbjct: 174 LADFPLSEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLHCL-DKDITNNFKLLFEELPKT 231
Query: 728 R-ATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786
+ P+F M + + + + + E + T K +E
Sbjct: 232 GLNVWVSTPSFV--DMCLLDPNFNQE----NYPHLTHFLFCGEELPVKTAKALLE----- 280
Query: 787 GLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
+ + YG E V V+ + ILD R+ G+ PD+++ I++ E
Sbjct: 281 RFPKATIYNTYGPTEATVAVTSV--KITQEILDQYPRLPIGFA---KPDMNLFIMDEE-- 333
Query: 847 EEIGEP---GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID 903
GEP G++GE+ I PS GY E + F + Y RTGD G I D
Sbjct: 334 ---GEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAF-FSHEGQPA--Y-RTGDAGTITD 386
Query: 904 GKFFITGRIKDLIIVAGRNVYSADVEKTVESSTE 937
G+ F GR+ I + G + D+E + S+
Sbjct: 387 GQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSY 420
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-13
Identities = 92/482 (19%), Positives = 164/482 (34%), Gaps = 53/482 (10%)
Query: 1191 WIFQLLALVYVSVMLILPAYLSVSAFTTLVSAPQTLLDE--RPWLNYMFSLTFAPLAWIL 1248
++ AL V V+L A+L L ++ + A +I
Sbjct: 231 RLYVAGALFVVFVLLPPLAFLFAIPVAITFDEIDWTLGPDMVGFILALVLTFVALAGFIA 290
Query: 1249 CIFATCISITIFGNSFLRPNYTLNPEVSIWSADFVKWWALYKVHEVSCKVLAVYLRGTVF 1308
++ + N L+P + S + + W + ++ + S +VL L + +
Sbjct: 291 YTVLLLAAVRLLLNLVLKPG-----RYYVHSGFYYQAWTVQQLMDNS-RVLLFPLYASSY 344
Query: 1309 LNWWFEMLGAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKI 1368
+ W+ LGAK+G + + P L IG+ I++G L+ + + G +I
Sbjct: 345 IPHWYRALGAKIGKVAEISSAQHEVPDLTDIGEETFIADGLLMGNARLSGGWFRLGRTRI 404
Query: 1369 ARKVSVGPYAVIQKGSVIGEEAEVAPLQKSEGGKPILKSTNANYVQKGGAVSKISTHRTQ 1428
R+ +G G+ G+ + L + P G ++ R
Sbjct: 405 GRRSFLGNSGYYPPGAKTGDNVLLGVLSMT----PKDGKVREGVGWLGSPPFELPR-RVN 459
Query: 1429 DEAIHQFIGIYIVSFLSTLSAAITYFLYIWLSQKPASPRHFAFLCISGAFHWLPFTIIAY 1488
+ + A+T+ +P R A + LPF ++ +
Sbjct: 460 RDDELE---------------ALTF--------EPDPRRRLARKNVENLRIILPFLLVQW 496
Query: 1489 ATMFASVPANPAYFAIST--AVAYLFHGLVLSYLTCILTHFLAGKK------EEKQTH-- 1538
A +FA V + T L L+L + L +K + Q H
Sbjct: 497 AMLFALVVLDLQALDDYTEWGAVALLAALILMAVGVGAFLILVERKWLVFGRLKPQEHPL 556
Query: 1539 --LKAWLCHRIT----IACHLRFAKLLSGTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQ 1592
WL F + GT LRLLG KIGR I + ++
Sbjct: 557 WSPFVWLHELHWKLYESVAVPNFLRPFRGTPFLPAILRLLGVKIGRGVYIDGTD-LTERD 615
Query: 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652
VT+G L + S I + V + D + +G ++VL V+ +LG
Sbjct: 616 LVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPD 675
Query: 1653 SV 1654
S+
Sbjct: 676 SL 677
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 2e-13
Identities = 87/331 (26%), Positives = 145/331 (43%), Gaps = 52/331 (15%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK----RYK-STSKTVLVSWLPQYHDM 689
DD+ + ++SG+TG +KGV++TH LI V+L + +Y+ S V ++ LP +H
Sbjct: 198 DDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIY 257
Query: 690 GLIGGLFTAMVG----GSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFEL---M 742
GL LF +VG GST ++ F + ++ + + +++ TH F + +
Sbjct: 258 GL--SLF--VVGLLSLGSTIVVMR--RFDASDMV--KVIDRFKVTH-------FPVVPPI 302
Query: 743 VRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAEN 802
+ L V L S+K + A P+ ++ FV+ QG YG+ E
Sbjct: 303 LMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQG-----YGMTE- 356
Query: 803 CVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862
S A G G + P++ ++V+ T + PG GE+WI
Sbjct: 357 ----STAVGTRGFNTEKLSKYSSVGLLA---PNMQAKVVDWSTGCLL-PPGNCGELWIQG 408
Query: 863 PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGR 921
P GY + +Q T + + RTGD+ DG +I R+K++I G
Sbjct: 409 PGVMKGYLNNPKATQSTIDKD-------GWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGF 461
Query: 922 NVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
+ AD+E + S E I AV VP++
Sbjct: 462 QIAPADLEAVLISHPEIID---AAVTAVPDK 489
|
Length = 560 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-13
Identities = 97/421 (23%), Positives = 158/421 (37%), Gaps = 91/421 (21%)
Query: 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVL------VSW 682
+ + P+D L FTSG+TG KGV+ H ++ + +T++ VL V W
Sbjct: 83 YERTDPEDPALLHFTSGTTGKPKGVLHVHRAVVA--------HYATARYVLDLRPDDVYW 134
Query: 683 LPQYHDMGLIGGLFTAMVG----GSTAILFSPLTFIKNPLLWLETMSKYRAT--HSAGPN 736
D G + G ++ G T ++ F + W + + + T ++A
Sbjct: 135 CTA--DPGWVTGTSYGIIAPLLNGVTLVVDEG-EF--DAERWYGILEEEKVTVWYTAPTA 189
Query: 737 FAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE-LTRPF------GLS 789
M+ R + +DLSS++ + EP+ V + L P +
Sbjct: 190 LR---MLMRAGP--ELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTET 244
Query: 790 QGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEE- 848
+M Y + V G+P+ P ++ ++ +
Sbjct: 245 GAIMIANYP----GIPVK-PGSMGRPL-----------------PGIEAAVIERDGDGLT 282
Query: 849 -IGEPGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDG 904
+ PG+ GE+ + PS GY G EE +F + + TGDL R DG
Sbjct: 283 PVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDG--------WYLTGDLAYRDEDG 334
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDG 964
F+ GR D+I AG V +VE + EH VIG P+ V
Sbjct: 335 YFWFVGRADDVIKTAGHLVGPFEVESAL---MEHPAVAEAGVIGKPDPVA---------- 381
Query: 965 SDQVGLVVIAEV--RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIK 1022
G +V A V R G +++ + T + G VA ++ + KT SGKI
Sbjct: 382 ----GEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIM 437
Query: 1023 R 1023
R
Sbjct: 438 R 438
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-13
Identities = 98/462 (21%), Positives = 173/462 (37%), Gaps = 112/462 (24%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y+E++ A I L R +KPGD++ + +++ C ++ VP+
Sbjct: 7 SYKEVEERALNIGSGL---RALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLY-- 61
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
D L G +A+ I N ++ +S + + AV+V S+ L + L
Sbjct: 62 DTL--GEEAIEYILNETE-------ISIV-FCDAVKVYSFEEL------------EELGK 99
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS--TSKTVLVS 681
+N V T +P+DL + +TSG+TG+ KGVM+THG ++ V + K V +S
Sbjct: 100 KNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYIS 159
Query: 682 WLPQYHDMGLIGGLFTAMVGGSTAILFSPLT--------------FIKNPLLWLETMSK- 726
+LP H + +GG +S T F+ P + + + K
Sbjct: 160 YLPLAHIFERVVENVCLYIGGRIGY-YSGDTRGLKGDIKELKPTVFVGVPRVL-DRIYKG 217
Query: 727 YRATHSAGP-------NFAFELMVRRLESSK------------DKVRSFDLSSMKFLMVA 767
A +A NFA+ + L K+++ ++ ++
Sbjct: 218 ILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGRVRLMLSG 277
Query: 768 AEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCG 827
P+ + F+ + G + GYGL E C
Sbjct: 278 GAPL-SPDTQEFLRVA--LG---CPVLQGYGLTETC------------------AGGTLS 313
Query: 828 YVDQND--------PDVDIRIVN-PE---TSEEIGEPGKEGEVWISSPSAGIGYWGREEL 875
P +I++V+ PE ++ +P GE+ I P+ GY+ E
Sbjct: 314 DPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAK--DDPP-RGEICIRGPNVFKGYYKNPEK 370
Query: 876 SQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLI 916
+ F + + TGD+G + DG I R K+L
Sbjct: 371 TAEAFDED-------GWFHTGDIGEWLPDGTLKIIDRKKNLF 405
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-13
Identities = 66/250 (26%), Positives = 90/250 (36%), Gaps = 48/250 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY ELDA +R+A LL +K GDRV + + + C RA + VPV
Sbjct: 38 TYAELDAAVNRVAAALLDLG---LKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFM 94
Query: 561 LPPDPL-----QRGGQALL-------KIENISKSCGAVAILSTIGYHSAVRVGSWPNLPW 608
L + L G +A L E ++ S V G W
Sbjct: 95 LTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLIL-----SLVLGGREAPGGW 149
Query: 609 LHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR 668
L W + + E DDL + +TSG+ KG M+TH LI
Sbjct: 150 LDFADWAEAGSVAEPD-----VELADDDLAQILYTSGTESLPKGAMLTHRALIAE----- 199
Query: 669 KRYKST-------SKTVLVSWLPQYHDMGLIGGLFTA-MVGGSTAILFSPLTFIKNPLLW 720
Y S + + + LP YH L L VG + IL +P +P L
Sbjct: 200 --YVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAP-----DPELI 252
Query: 721 LETMSKYRAT 730
L T+ R T
Sbjct: 253 LRTIEAERIT 262
|
Length = 523 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-13
Identities = 111/465 (23%), Positives = 186/465 (40%), Gaps = 85/465 (18%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
++ ELDA + IAH L + I G R +L+ P L+F F +A +PV V
Sbjct: 43 SFAELDARSDAIAHGLNAAG---IGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLV--- 96
Query: 564 DPLQRGGQALLKIENISKSCGAVAILST-IGY---HSAVRVGSWPNLPWLHTDSWVKNSK 619
DP G + I+N+ K C A A IG H A R+ W P + V
Sbjct: 97 DP---G----MGIKNL-KQCLAEAQPDAFIGIPKAHLARRLFGWGK-PSVRR--LVTVGG 145
Query: 620 NLLAENVVCFT-------------ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL 666
LL T + PDD+ + FTSGSTG KGV+ THG ++
Sbjct: 146 RLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEA 205
Query: 667 MRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIK----NPLLWLE 722
+R+ Y + + P + LF +G ++ I + + +P
Sbjct: 206 LREDYGIEPGEIDLPTFPLF-------ALFGPALGMTSVI--PDMDPTRPATVDPAKLFA 256
Query: 723 TMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVEL 782
+ +Y T+ G + A L+ R + L S++ ++ A PV ++RF +
Sbjct: 257 AIERYGVTNLFG-SPA--LLERLGRYGEANGIK--LPSLRRVISAGAPVPIAVIERFRAM 311
Query: 783 TRPFGLSQG--VMAPGYGLAENCVFVSCAYGQGKPIILD--WQ-----GRVCCGYVDQND 833
L ++ P YG E + +S + IL +C G
Sbjct: 312 -----LPPDAEILTP-YGATE-ALPISSIESR---EILFATRAATDNGAGICVGRP---V 358
Query: 834 PDVDIRIV----NP-ETSEEIGE--PGKEGEVWISSPSAGIGYWGREELSQITFRNELQN 886
V++RI+ P ++ G+ GE+ ++ P Y+ R E +++ ++ +
Sbjct: 359 DGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL---AKIPD 415
Query: 887 NRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEK 930
+G + R GDLG + G+ + GR + AG +Y+ E+
Sbjct: 416 GQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCER 460
|
Length = 552 |
| >gnl|CDD|215783 pfam00199, Catalase, Catalase | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 9e-13
Identities = 69/294 (23%), Positives = 106/294 (36%), Gaps = 68/294 (23%)
Query: 1721 GVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSN---SLSADDDARIDARGAAIRI 1776
G G + + L F GK PV VR S + D AR D RG A++
Sbjct: 51 GAGAFGTFEVTGDASDLTKAAFFSAVGKKTPVFVRFSTVGGEPGSADTAR-DPRGFALKF 109
Query: 1777 FSDLNGNTSSLLDLTLKTGNA---FYARTIGDFATWLVCGLAAREEH-VKRVP--HIRDA 1830
+++ GN DL GN F+ R F ++ H K P ++ D
Sbjct: 110 YTE-EGNW----DLV---GNNTPVFFIRDPIKFPDFI---------HAQKPDPATNLPDP 152
Query: 1831 --VW----------------KSLR-LSDSYAEMHYYSNICRLFRFT--DGQEMYVKFKLR 1869
W S R S+ M+ Y F+F DG+ YVKF +
Sbjct: 153 TMFWDFLALHPESLHQVTWLFSDRGTPASFRHMNGYG--VHTFKFVNADGKRTYVKFHFK 210
Query: 1870 PYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929
P D G + + E + +D D FL + + ++ +Q
Sbjct: 211 P-------DQG---VKNLTAEEAAKLAGEDPD-----FLTRDLYEAIERGGPPKWTLYVQ 255
Query: 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
+ E + D TK W YP I+VG +++++N E E+ F+P
Sbjct: 256 VMDPGDAEDFRFNPFDATKVWPHDRYPLIEVGTLTLNRNPDNYFAEVEQAAFDP 309
|
Length = 383 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-12
Identities = 95/484 (19%), Positives = 165/484 (34%), Gaps = 103/484 (21%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY EL+A ++R+AH L R ++ GD V ++ +F + ++ R+ + P+
Sbjct: 13 TYGELEARSNRLAHGL---RALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWH 69
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR--VGSWPN-LPWLHTDSWVKN 617
L +I I GA ++ + P +P L +
Sbjct: 70 LTAA----------EIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVP 119
Query: 618 SKNLLAENVVCFTESQPDDL---CFLQFTSGSTGDAKGVM-------ITHGGLIHNVKLM 667
E + ++ D + ++SG+TG KG+ + L
Sbjct: 120 GFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLG 179
Query: 668 RKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMS 725
Y L P YH L G+ +GG+ ++ F L +
Sbjct: 180 FGMYGGPDSVYLSP-APLYHTAPLRFGMSALALGGTVVVMEKFDAEEA-------LALIE 231
Query: 726 KYRATHSAGPNFAFELMV----RRLESSKDKVR-SFDLSSMKFLMVAAEPVRQTTVKRFV 780
+YR THS +V R+ ++VR +D+SS++ + AA P + +
Sbjct: 232 RYRVTHSQ--------LVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMI 283
Query: 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ--------GKPIILDWQGRVCCGYVDQN 832
+ P ++ Y +E GK G V
Sbjct: 284 DWWGP------IIHEYYASSEGGGVTVITSEDWLAHPGSVGKA----VLGEV-------- 325
Query: 833 DPDVDIRIVNPETSEEIGEP---GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRG 889
RI++ + G G+ G V+ Y E +
Sbjct: 326 ------RILDED-----GNELPPGEIGTVYFEMDGYPFEYHNDPEKTA-------AARNP 367
Query: 890 RKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948
+ GD+G + DG ++T R D+II G N+Y ++E + H + AV G
Sbjct: 368 HGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLL---VTHPKVADVAVFG 424
Query: 949 VPEE 952
VP+E
Sbjct: 425 VPDE 428
|
Length = 502 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-12
Identities = 116/494 (23%), Positives = 179/494 (36%), Gaps = 97/494 (19%)
Query: 502 QSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV- 560
+ TY EL+ A+R+AH L+ + PGD V + +++V+A G +A+ +PV V
Sbjct: 28 RLTYAELEERANRLAHYLIAQG---LGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVN 84
Query: 561 --LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS--AVRVGS-WPNLPWLHTDSWV 615
D L+ + AVA++ Y A RV P LP L T V
Sbjct: 85 YRYVEDELRY----------LLDDSDAVALV----YEREFAPRVAEVLPRLPKLRT--LV 128
Query: 616 K---NSKNLLAENVVC-------------FTESQPDDLCFLQFTSGSTGDAKGVMITH-- 657
S N L V F E PDDL L +T G+TG KGVM
Sbjct: 129 VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLYLL-YTGGTTGMPKGVMWRQED 187
Query: 658 ------GGL-------IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGST 704
GG I + + + KR + P H G F A+ G T
Sbjct: 188 IFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAA-FAALFSGQT 246
Query: 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764
+L + F + T+ + + + M R L + + +DLSS+ +
Sbjct: 247 VVLLPDVRF--DADEVWRTIEREKVNVIT---IVGDAMARPLLDALEARGPYDLSSLFAI 301
Query: 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE--NCVFVSCAYGQGKPIILDWQG 822
+ + +EL L V+ G +E + A G
Sbjct: 302 ASGGALFSPSVKEALLEL-----LPNVVLTDSIGSSETGFGGSGTVAKGAVH----TGGP 352
Query: 823 RVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS-SPSAGIGYWGREELSQITFR 881
R +++ + + EPG WI+ +GY+ E + TF
Sbjct: 353 RF--------TIGPRTVVLDEDGNPV--EPGSGEIGWIARRGHIPLGYYKDPEKTAETFP 402
Query: 882 NELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR 940
G +Y GD R+ DG + GR I G V+ +VE+ +++ H
Sbjct: 403 TI----DGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKA---H-- 453
Query: 941 PGC--CAVIGVPEE 952
P V+GVP+E
Sbjct: 454 PDVADALVVGVPDE 467
|
Length = 533 |
| >gnl|CDD|163709 cd08153, srpA_like, Catalase-like heme-binding proteins similar to the uncharacterized srpA | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 60/259 (23%), Positives = 91/259 (35%), Gaps = 54/259 (20%)
Query: 1742 IFHPGKCYPVIVRHSNS--LSADDDARIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFY 1799
+F G PV R S D + RG A++ F +G + + + F
Sbjct: 42 LFSGGS-VPVTGRFSLGGGNPKAPDDAANPRGMALK-FRLPDG---EQWRMVMNSFPVFP 96
Query: 1800 ARTIGDFATWLVCGL---------AAREEHVKRVPHIRDAV-W-KSLRLSDSYAEMHYYS 1848
RT +F L A + + P + W K+ S+A YY
Sbjct: 97 VRTPEEFLALLKAIAPDATGKPDPAKLKAFLAAHPEAAAFLAWIKTAPPPASFANTTYYG 156
Query: 1849 -NICRLFRFTD--GQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPL 1905
N F FT+ G+ V+++ P D G E L P+
Sbjct: 157 VNA---FYFTNANGKRQPVRWRFVPED---GVKYLSDEEAAKLGPD-------------- 196
Query: 1906 LFLADEFQRRV-SSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEIS 1964
FL DE +R+ P VR+ LQ+ P D D TKPW A+ +D G ++
Sbjct: 197 -FLFDELAQRLAQGP--VRWDLVLQL-AEPGDPTD-----DPTKPW-PADRKEVDAGTLT 246
Query: 1965 IDQNL--STEESEKLEFNP 1981
I + + F+P
Sbjct: 247 ITKVAPDQGGACRDINFDP 265
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism. Length = 295 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 4e-12
Identities = 115/491 (23%), Positives = 172/491 (35%), Gaps = 103/491 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRV--LLVYVPGLDFVDAFFGCMRAKVLPVPV- 560
TY E R+A L K I GD V L P ++A FG A + VP+
Sbjct: 31 TYRETYDRCRRLASAL---SKLGIGKGDVVAVLAPNTPA--MLEAHFGVPMAGAVLVPLN 85
Query: 561 --LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR--VGSWPNLPWLHTDSWVK 616
L D I I A + + S + + T+ V
Sbjct: 86 TRLDAD----------DIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVI 135
Query: 617 NSK----------NLLAENVVCFTESQPDD---LCFLQFTSGSTGDAKGVMITHGG---- 659
+ +LLA PDD L +TSG+TG+ KGV+ TH G
Sbjct: 136 SPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLN 195
Query: 660 ----LIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIK 715
+I M R V + LP +H G VGG+ L
Sbjct: 196 ALGNVIEWG--MPDR------PVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRKV----- 242
Query: 716 NPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTT 775
+ + + K++ TH G ++ E+ K L +M A P
Sbjct: 243 DAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLP-----LPRPVRVMTAGAPPPPAV 297
Query: 776 VKRFVELTRPFGLSQGVMAPGYGLAENC-VFVSCAYGQGKPIILDWQG-----------R 823
+K+ EL G + YGL E C + KP +W R
Sbjct: 298 IKKMEEL----GFE---VTHVYGLTETYGPITVCEW---KP---EWDALPAEERARLKAR 344
Query: 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE-GEVWISSPSAGIGYWGREELSQITFRN 882
YV + + +V+PET +++ GK GE+ + + GY+ E ++ F
Sbjct: 345 QGVRYVGLEE----VDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAG 400
Query: 883 ELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRP 941
+ +GDL + DG I R KD+II G N+ S +VE + +H
Sbjct: 401 --------GWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVL---YKHPAV 449
Query: 942 GCCAVIGVPEE 952
AV+ P+E
Sbjct: 450 LEAAVVARPDE 460
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-12
Identities = 89/420 (21%), Positives = 148/420 (35%), Gaps = 97/420 (23%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNV--------------KLMRKRYKSTSKTVL 679
DDL ++ +T G+TG KGVM + + +L ++ + T
Sbjct: 3 ADDL-YMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61
Query: 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSA--GPNF 737
+ P H G L G T +L F +P T+ K+R G F
Sbjct: 62 LPACPLMHGAGQWLALSALF-AGGTVVLLPDDKF--DPDRVWRTVEKHRVNTLVIVGDAF 118
Query: 738 AFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE------LTRPFGLSQG 791
A R L + + +DLSS++ + + + +E L G S+
Sbjct: 119 A-----RPLLEALEAAGRYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASET 173
Query: 792 VMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGE 851
G ++ G + + D +++ + SE
Sbjct: 174 GGG-GSSVSRA--------GGASA-------------TGKFELGPDTVVLDEDGSEV--P 209
Query: 852 PGKEGEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFIT 909
PG WI+ +GY+ E + TFR G +Y GD R+ DG +
Sbjct: 210 PGSGEVGWIARGGRVPLGYYKDPEKTAKTFREI----DGVRYAVPGDFARVEADGTITLL 265
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQ 967
GR I G V+ +VE+ +++ H P V+GVP+E G
Sbjct: 266 GRGSVCINTGGEKVFPEEVEEALKA---H--PDVADALVVGVPDERW---------GQRV 311
Query: 968 VGLVVIAEVRDGKPVDKD-VIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGK 1020
V +V ++R G +D + ++ + +A KL PR T+ + SGK
Sbjct: 312 VAVV---QLRAGAGLDLAELRDHCRQH--------LAGYKL--PRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 3e-11
Identities = 102/463 (22%), Positives = 175/463 (37%), Gaps = 71/463 (15%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPV---PV 560
TY EL A +A +L +R P RV +V +D V A R +P P
Sbjct: 30 TYSELRARVEGVAARLH-ARGVR--PQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPR 86
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
L P + L+K ++ + AV A+ S + L V +
Sbjct: 87 LKPAEIAE----LIKRGEMTAAVIAVDAQVM----DAIF-QSGSGVRVLALGDLVGLGEP 137
Query: 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR--YKSTSKTV 678
A + +P+ F+ +TSG+TG KG +I V M + + V
Sbjct: 138 ESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNV 197
Query: 679 LVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGP 735
++ +P YH +G L A+ T ++ F P + L +E + R T
Sbjct: 198 VLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPA----DALKLIE---QERVTSLFAT 250
Query: 736 NFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ + E + L S++ + A + ++R V P G
Sbjct: 251 PTHLDALAAAAEGA-----PLKLDSLEHVTFAGATMPDAVLER-VNQHLP-----GEKVN 299
Query: 796 GYGLAE--NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN-PETSEEIGEP 852
YG E N +++ G + G+ + +RIV + +E
Sbjct: 300 IYGTTEAMNSLYMRDPR-TGT--------EMRPGFFSE------VRIVRIGGSPDEALPN 344
Query: 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGR 911
G+EGE+ +++ A L+Q + + + Y RT D+ + G I GR
Sbjct: 345 GEEGELVVAAADATF----TGYLNQ--PQATAEKLQDGWY-RTSDVAVVDPSGTVRILGR 397
Query: 912 IKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEE 952
+ D+II G N++ ++VE+ + + PG VIG+P+E
Sbjct: 398 VDDMIISGGENIHPSEVERVLGRA-----PGVTEVVVIGLPDE 435
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 5e-11
Identities = 96/435 (22%), Positives = 169/435 (38%), Gaps = 53/435 (12%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y ELD+ A+R+AH+L R + P RV + + V A ++A VP+ P
Sbjct: 2030 SYAELDSRANRLAHRL---RARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPN 2086
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV-GSWPNLPWLHTDSWVKNSKNLL 622
P +R L + GA +L+ + + LP L D+ + +
Sbjct: 2087 YPAERLAYML-------EDSGAALLLTQRHLLERLPLPAGVARLP-LDRDAEWADYPDTA 2138
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
+ ++L ++ +TSGSTG KGV ++HG L+ + + +RY+ + + +
Sbjct: 2139 PAV-----QLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQF 2193
Query: 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWL-----ETMSKYRATHSAGPNF 737
+ D G F ++ G+ + I++ LW + M ++ T P
Sbjct: 2194 MSFSFD-GAHEQWFHPLLNGARVL-------IRDDELWDPEQLYDEMERHGVTILDFPPV 2245
Query: 738 AFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGY 797
+ + E R +++ E V +++ E RP L GY
Sbjct: 2246 YLQQLAEHAE------RDGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFN-----GY 2294
Query: 798 GLAENCVFVSCAYGQGKPIILDWQGRVCCG--YVDQNDPDVDIRIVNPETSEEIGEPGKE 855
G E V P++ + + CG YV + R + + PG
Sbjct: 2295 GPTEAVV---------TPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMA 2345
Query: 856 GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKD 914
GE+++ GY R L+ F + + G + RTGDL R DG GRI
Sbjct: 2346 GELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDH 2405
Query: 915 LIIVAGRNVYSADVE 929
+ + G + ++E
Sbjct: 2406 QVKIRGFRIELGEIE 2420
|
Length = 5163 |
| >gnl|CDD|223824 COG0753, KatE, Catalase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-11
Identities = 82/350 (23%), Positives = 127/350 (36%), Gaps = 82/350 (23%)
Query: 1712 VKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS---NSLSADDDARI 1767
+ R H G G + ++I K+F GK PV VR S + D R
Sbjct: 58 IPERVVHAKGSGAHGYFEVTEDISKYTKAKLFQEVGKKTPVFVRFSTVAGERGSADTVR- 116
Query: 1768 DARGAAIRIFSDLNGNTSSLLDLTLKTGN---AFYARTIGDFATWLVCGLAAREEHVKRV 1824
D RG A++ +++ GN DL GN F+ R F ++ K
Sbjct: 117 DVRGFALKFYTE-EGN----WDLV---GNNTPVFFIRDAIKFPDFI--------HAQKPD 160
Query: 1825 PH--IRDA--VWK-------SLR-----LSD-----SYAEMHYYSNICRLFRFTD--GQE 1861
P +RDA W SL +SD SY M + F+F + G+
Sbjct: 161 PRTNLRDADTFWDFWSLNPESLHQVTWLMSDRGIPASYRHMEGFG--VHTFKFVNAKGKR 218
Query: 1862 MYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSG 1921
++VKF +P + I + + E + D D + + + +
Sbjct: 219 VWVKFHFKP-KQGI---------KNLTWDEAAKLAGKDPD-----YHQRDLYEAIENGDF 263
Query: 1922 VRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEF 1979
+ +Q+ P E LD TK W E +YP I+VG + +++N E E+ F
Sbjct: 264 PEWDLYVQVMPEEDAEKFDFDPLDLTKLWPEEDYPLIEVGTMVLNRNPDNFFAEVEQAAF 323
Query: 1980 NPYLKCNEIDVIPATTSSQSASID---HGRSLIYEICQHLR---NGEPLP 2023
P +++P S D GR Y Q R N +P
Sbjct: 324 APG------NLVPG----IDFSPDPLLQGRLFSYGDTQRYRLGPNYHQIP 363
|
Length = 496 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-10
Identities = 94/440 (21%), Positives = 158/440 (35%), Gaps = 73/440 (16%)
Query: 494 NEEGVAV----NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549
+ VAV + TY EL+ A+R+AH L+ + P V + + +
Sbjct: 4564 TPDAVAVVFDEEKLTYAELNRRANRLAHALIARG---VGPEVLVGIAMERSAEMMVGLLA 4620
Query: 550 CMRAKVLPVPVLPPDPLQR-------GGQALLKIENISKSCGAVAILSTIGYHSAV--RV 600
++A VP+ P P +R G ALL +++S + G S R
Sbjct: 4621 VLKAGGAYVPLDPEYPRERLAYMMEDSGAALL----LTQSHLLQRLPIPDGLASLALDRD 4676
Query: 601 GSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL 660
W P D V+ PD+L ++ +TSGSTG KGV ++HG L
Sbjct: 4677 EDWEGFP--AHDPAVR---------------LHPDNLAYVIYTSGSTGRPKGVAVSHGSL 4719
Query: 661 IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLW 720
++++ +RY+ T ++ ++ D G GL+ ++ G++ ++ + +P
Sbjct: 4720 VNHLHATGERYELTPDDRVLQFMSFSFD-GSHEGLYHPLINGASVVI--RDDSLWDPERL 4776
Query: 721 LETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780
+ ++R T P + + + R + S++ E V Q +
Sbjct: 4777 YAEIHEHRVTVLVFPPVYLQQLA------EHAERDGEPPSLRVYCFGGEAVAQASYDLAW 4830
Query: 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRI 840
+P L GYG E V V + I
Sbjct: 4831 RALKPVYLFN-----GYGPTETTVTVLL--------------WKARDGDACGAAYMPIGT 4871
Query: 841 VNPETSEEI----GEP---GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYT 893
S + P G GE+++ GY R L+ F + G +
Sbjct: 4872 PLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLY 4931
Query: 894 RTGDLGRI-IDGKFFITGRI 912
RTGDL R DG GR+
Sbjct: 4932 RTGDLARYRADGVIDYLGRV 4951
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-10
Identities = 116/552 (21%), Positives = 202/552 (36%), Gaps = 90/552 (16%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y EL+ A+R+AH L+ + + P V + ++ V ++A VP+ P
Sbjct: 539 SYAELNRQANRLAHVLIAAG---VGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPE 595
Query: 564 DPLQR-------GGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVK 616
P R G LL +++S +L+ + + +R L +
Sbjct: 596 YPQDRLAYMLDDSGVRLL----LTQS----HLLAQLPVPAGLRS-----LCLDEPADLLC 642
Query: 617 NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK 676
E PD+L ++ +TSGSTG KGV I+HG L + V ++ +R + +
Sbjct: 643 GYSGHNPE-----VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAAD 697
Query: 677 TVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
++ D+G + LF A+ G+T L P ++ + M+ T
Sbjct: 698 DSMLMVSTFAFDLG-VTELFGALASGATLHLLPPDC-ARDAEAFAALMADQGVTVLKIVP 755
Query: 737 FAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVEL---TRPFGLSQGVM 793
+ ++ R + L+ E ++ + R L R
Sbjct: 756 SHLQALL-------QASRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINH----- 803
Query: 794 APGYGLAENCVFVS---CAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRI----VNPETS 846
YG E V VS + + + G V G Q ++ + I +NP
Sbjct: 804 ---YGPTETTVGVSTYELS-DEERDF-----GNVPIG---QPLANLGLYILDHYLNPVP- 850
Query: 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGK 905
G GE++I GY R L+ F + G + RTGDL R DG
Sbjct: 851 -----VGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGV 905
Query: 906 FFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGS 965
GR+ + + G + ++E + A GV E V+ G
Sbjct: 906 IEYLGRMDHQVKIRGFRIELGEIEARLL-----------AQPGVREAVV--LAQPGDAGL 952
Query: 966 DQVGLVVIAEVRDG--KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
V +V A V DG +D ++ +V+ ++ V + L + T +GK+ R
Sbjct: 953 QLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDS---LPLTPNGKLDR 1009
Query: 1024 FECLKQFVDGTL 1035
+ L + +
Sbjct: 1010 -KALPKPDASAV 1020
|
Length = 3956 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-10
Identities = 86/359 (23%), Positives = 128/359 (35%), Gaps = 103/359 (28%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK--RYKSTSKTVLVSWLPQYHDMG 690
+P+ C L +TSG+TG KGVM++H + K K ++ + +VS+LP H
Sbjct: 148 KPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAA 207
Query: 691 LIGGLFTAM-VG------------GSTAILFS---PLTFIKNPLLW-------------- 720
I ++ + VG G+ P F+ P +W
Sbjct: 208 QILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKS 267
Query: 721 ---------------LETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSF-DLSSMKFL 764
LET K S P + ++L KVR L +
Sbjct: 268 TGLKRKIASWAKGVGLETNLKLMGGES--PPPMCFRLAKKLVFK--KVRKALGLDRCQKF 323
Query: 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAEN--CVFVSCAYGQGKPIILDWQG 822
A P+ + T++ F+ L P YG++E VS L G
Sbjct: 324 FTGAAPISRETLEFFLSLNIPIM-------ELYGMSETSGPHTVSNPQNYR----LLSCG 372
Query: 823 RVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRN 882
+ P + +I NP+ ++ IGE I WGR F
Sbjct: 373 KAL--------PGCETKIHNPD-ADGIGE---------------ICIWGRH-----VFMG 403
Query: 883 ELQNNRGRKYT-------RTGDLGRIIDGKF-FITGRIKDLIIVA-GRNVYSADVEKTV 932
L + +GDLG + D F +ITGRIK+LII A G NV +E+ V
Sbjct: 404 YLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAV 462
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-10
Identities = 109/441 (24%), Positives = 165/441 (37%), Gaps = 143/441 (32%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLI-HNVKLMRKRYKSTSKTVL------VSWLPQ 685
+D L +TSGSTG KGV+ H ++ H T K VL V W
Sbjct: 203 DREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ---------TGKYVLDLHEDDVYWCTA 253
Query: 686 YHDMGLIGG----LFTAMVGGSTAIL----FSPLTFIKNPLLWLETMSKYRAT--HSAGP 735
D G + G +F + G+T ++ FSP W + Y+ T ++A P
Sbjct: 254 --DPGWVTGTSYGIFAPWLNGATNVIDGGRFSPER-------WYRILEDYKVTVWYTA-P 303
Query: 736 NFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
A +++ + D V+ +DLSS++ ++ EP+ V+
Sbjct: 304 T-AIRMLMG---AGDDLVKKYDLSSLRHILSVGEPLNPEVVR------------------ 341
Query: 796 GYGLAENCVFVSCAYGQGKPIILD--WQ----GRVCCGYVDQNDPDVDIR---------- 839
+G+ VF G PI D W G + Y P +DI+
Sbjct: 342 -WGMK---VF-------GLPI-HDNWWMTETGGIMIANY-----PAMDIKPGSMGKPLPG 384
Query: 840 ----IVNPETSEEIGEPGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYT 893
IV+ + +E P + G + I PS G W E + F + Y
Sbjct: 385 IEAAIVDDQGNE--LPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDW-------YV 435
Query: 894 RTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVP 950
+GD + DG F+ GR+ D+I +G V +VE + EH P VIG P
Sbjct: 436 -SGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKL---MEH--PAVAEAGVIGKP 489
Query: 951 EEVLSTKGISVSDGSDQVGLVVIAEV--RDGKPVDKDVIENIKTRVVEEHGVTVASVKLI 1008
+ V G ++ A V R G +++ E I+ V + G A
Sbjct: 490 DPV--------------RGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAA----- 530
Query: 1009 KPRTMS------KTTSGKIKR 1023
PR + KT SGKI R
Sbjct: 531 -PREIEFKDKLPKTRSGKIMR 550
|
Length = 570 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-10
Identities = 120/542 (22%), Positives = 190/542 (35%), Gaps = 86/542 (15%)
Query: 505 YEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV---L 561
Y EL A +A L R + G RVL++ G + + C + + V L
Sbjct: 44 YRELVAEVGGLAADL---RAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNL 100
Query: 562 PPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNL 621
P ++R + A L G ++ S LH+ +
Sbjct: 101 PIAAIER----------FCQITDPAAALVAPG----SKMASSAVPEALHSIPVIAVDIAA 146
Query: 622 LAENVVC-----FTESQP----DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-- 670
+ +D + FTSG+TG+ K V++ + +++K
Sbjct: 147 VTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGL 206
Query: 671 --YKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETM-SKY 727
S LP H GL L M GG +T +N LE + +
Sbjct: 207 NWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLC------VTGGENTTSLLEILTTNA 260
Query: 728 RATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFG 787
AT P +L+ S+ K + + S++ + V RF+E T
Sbjct: 261 VATTCLVPTLLSKLV------SELKSANATVPSLRLVGYGGSRAIAADV-RFIEAT---- 309
Query: 788 LSQGV-MAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPE-- 844
GV A YGL+E C I ++ G V + P VD+ + +
Sbjct: 310 ---GVRTAQVYGLSETGCTALCLPTDDGSI-----VKIEAGAVGRPYPGVDVYLAATDGI 361
Query: 845 --TSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDL-GRI 901
T+ G G +WI SP+ +GYW E + + N TGDL R
Sbjct: 362 GPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVN--------TGDLLERR 413
Query: 902 IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISV 961
DG F+I GR ++II G N+ +V++ E +R C I P+E
Sbjct: 414 EDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE-GVSGVREAACYEI--PDEEFGA----- 465
Query: 962 SDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKI 1021
VGL V+A + + + I R E ++ + +T SGK+
Sbjct: 466 -----LVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKV 520
Query: 1022 KR 1023
R
Sbjct: 521 MR 522
|
Length = 540 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-10
Identities = 71/316 (22%), Positives = 110/316 (34%), Gaps = 62/316 (19%)
Query: 636 DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695
D F +TSG+TG K +++H + + VL LP YH L G
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGW 141
Query: 696 FTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRL------ 746
+A+ G++ L FS F W + + +Y AT + EL R L
Sbjct: 142 SSALAAGASLALRRKFSASQF------WPD-VRRYGATAF---QYVGEL-CRYLLNQPEK 190
Query: 747 -ESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE-NCV 804
+ +R ++ +R F E R FG+ + + YG E N
Sbjct: 191 PDDRDHPLR---------KIIGNG-LRPDIWDEFKE--R-FGVPR--IVEFYGSTEGNVG 235
Query: 805 FVS----------CAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
F++ ++ + D N I P E+G
Sbjct: 236 FINLFNKPGAVGRLPPAAIA--VVKYDVETEEPIRDAN----GFCIKVP--PGEVGLLLG 287
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIK 913
E I+ + GY E + R+ + +G Y TGDL R G F+ R+
Sbjct: 288 E----ITDRNPFDGYTDDEATEKKILRDVFK--KGDAYFNTGDLVRRDGFGYFYFVDRLG 341
Query: 914 DLIIVAGRNVYSADVE 929
D G NV + +VE
Sbjct: 342 DTFRWKGENVSTTEVE 357
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-10
Identities = 84/326 (25%), Positives = 130/326 (39%), Gaps = 61/326 (18%)
Query: 642 FTSGSTGDAKGVMITHG--GLIHNVKLMRKR---YKSTSKTVLVSWLPQYHDMGLIGGLF 696
+TSG+TG KGV + MR K + +L P YH GL
Sbjct: 159 YTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTG--PLYHSAPNAYGLR 216
Query: 697 TAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVR 754
+GG + F P L+ + ++R TH M RL ++VR
Sbjct: 217 AGRLGGVLVLQPRFDPEEL-------LQLIERHRITHM----HMVPTMFIRLLKLPEEVR 265
Query: 755 S-FDLSSMKFLMVAAEPVRQTTVKR-FVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
+ +D+SS++ ++ AA P VKR +E P V+ YG E+
Sbjct: 266 AKYDVSSLRHVIHAAAPC-PADVKRAMIEWWGP------VIYEYYGSTESGAVTFATSED 318
Query: 813 --GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS-AGIGY 869
P G V + P ++R V+ E + G+ GE++ Y
Sbjct: 319 ALSHP-----------GTVGKAAPGAELRFVD-EDGRPLP-QGEIGEIYSRIAGNPDFTY 365
Query: 870 WGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADV 928
+ E R E+ RG T +GD+G + DG F+ R +D++I G N+Y A++
Sbjct: 366 HNKPEK-----RAEID--RGGFIT-SGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEI 417
Query: 929 EKTVESSTEHIRPGC--CAVIGVPEE 952
E + H PG CAV G+P+
Sbjct: 418 EAVL-----HAVPGVHDCAVFGIPDA 438
|
Length = 509 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-10
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 41/200 (20%)
Query: 835 DVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTR 894
+++I E + P +EGE+ + P+ GY RE+ ++ TF++ + +
Sbjct: 315 PCELKI---EKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQD--------GWFK 363
Query: 895 TGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEV 953
TGD+G + +G ++ R DLII G N+Y A++E+ V S + V+GVP++
Sbjct: 364 TGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEE-VLLSHPGVAE--AGVVGVPDD- 419
Query: 954 LSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKP--- 1010
+ G V +A V V ++ + EE +A K+ K
Sbjct: 420 -------------KWGQVPVAFVVKSGEVTEEEL----RHFCEEK---LAKYKVPKRFYF 459
Query: 1011 -RTMSKTTSGKIKRFECLKQ 1029
+ + SGK+ R E LKQ
Sbjct: 460 VEELPRNASGKLLRHE-LKQ 478
|
Length = 483 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-10
Identities = 98/491 (19%), Positives = 170/491 (34%), Gaps = 117/491 (23%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY ELD ++R+AH R +K GD V + L +++ + R+ + V
Sbjct: 26 TYRELDERSNRLAHLF---RSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR--VGSWPNL-PWLHTDS---- 613
L P I GA A++++ R + P + L D
Sbjct: 83 LTPAEAAY----------IVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL 132
Query: 614 --WVKNSKNLLAENVVCFTESQPDDLCF---LQFTSGSTGDAKGVM--ITHGGLIHNVKL 666
+V AE V + D + ++SG+TG KG+ + + L
Sbjct: 133 EGFVG-----YAEAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPL 187
Query: 667 ---MRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL--FSPLTFIKNPLLWL 721
+++ + S V +S P YH + +GG+ ++ F + L
Sbjct: 188 TAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQY-------L 240
Query: 722 ETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781
+ +Y TH+ + R L+ ++ +DLSS++ + AA P ++ ++
Sbjct: 241 ALIEEYGVTHT---QLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMID 297
Query: 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ-------------GKPIILDWQGRVCCGY 828
P ++ Y E F +C + G ILD G
Sbjct: 298 WWGP------IIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFGDLHILDDDGAEL--- 348
Query: 829 VDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRN------ 882
PG+ G +W E + N
Sbjct: 349 ----------------------PPGEPGTIWF------------EGGRPFEYLNDPAKTA 374
Query: 883 ELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRP 941
E ++ G ++ GD+G + DG ++T R +II G N+Y + E + H +
Sbjct: 375 EARHPDG-TWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLL---ITHPKV 430
Query: 942 GCCAVIGVPEE 952
AV GVP E
Sbjct: 431 ADAAVFGVPNE 441
|
Length = 511 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-10
Identities = 118/476 (24%), Positives = 198/476 (41%), Gaps = 82/476 (17%)
Query: 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV 560
N +T+ ELD + +A L SR+ V GDRVL++ + +FV++ + VPV
Sbjct: 41 NTTTWRELDDRVAALAGAL--SRRGV-GFGDRVLILMLNRTEFVESVLAANMLGAIAVPV 97
Query: 561 ----LPPDPLQRGGQALLKIENISKSCGAVAIL---STIGYHSAVRVGSWPNLPWL---- 609
PP+ I + CGA ++ + +AVR P L +
Sbjct: 98 NFRLTPPE-----------IAFLVSDCGAHVVVTEAALAPVATAVRDIV-PLLSTVVVAG 145
Query: 610 -HTDSWVKNSKNLLAENVVCFTESQ-PDDL-CFLQFTSGSTGDAKGVMITHGGLI-HNVK 665
+D V ++LLAE P+D + +TSG+TG KG ++TH L +
Sbjct: 146 GSSDDSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMT 205
Query: 666 LMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMS 725
+R + V +P +H G+ G + ++ G+ +++ F +P L+ +
Sbjct: 206 CLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYPLGAF--DPGQLLDVLE 262
Query: 726 KYRATHSAGPNFAFELMVR-RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTR 784
+ T F + + + ++ + R DL+ ++ L A P T +++ T
Sbjct: 263 AEKVTG------IFLVPAQWQAVCAEQQARPRDLA-LRVLSWGAAPASDTLLRQMAA-TF 314
Query: 785 P-------FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVD 837
P FG Q M+P V+C G+ I G V + P V
Sbjct: 315 PEAQILAAFG--QTEMSP----------VTCML-LGEDAIRK------LGSVGKVIPTVA 355
Query: 838 IRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGD 897
R+V+ ++ G+ GE+ +P+ GYW E + F + +GD
Sbjct: 356 ARVVDENMNDV--PVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG--------GWFHSGD 405
Query: 898 LGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
L R +G ++ R KD+II G N+Y A+VE V +S I AVIG +E
Sbjct: 406 LVRQDEEGYVWVVDRKKDMIISGGENIYCAEVE-NVLASHPDIVE--VAVIGRADE 458
|
Length = 542 |
| >gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-10
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 2074 LLQTVLPYFLIGLVIFTPLKWTLFLKENKILPLHWLL-----PMFWVSSGILAALAC--- 2125
+ QT+ LI +V + L+W L L +WL + + A
Sbjct: 1 VCQTLQ---LIPIVTLSGLQWLAPL-----LGYNWLYEALDDVSWLYLRAVALVFAVPVG 52
Query: 2126 -----AAAKWVLVGKKKEGESVQIWSKGVLMDTVWQAFRTLVGEYFVEMTSGSFLFVAWM 2180
AAKW+LVG+ K G IW G W + LV + SGS L+ ++
Sbjct: 53 RLGFAIAAKWLLVGRWKPGT-YPIW--GSTYLRFWTV-KRLVDAAPTVLLSGSPLYSLYL 108
Query: 2181 KLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFGHIYEGDGGKVKFGKIR 2240
+ +GA+I G+G + S+ V +++ + G G V KE +L G Y + G++ G +
Sbjct: 109 RALGAKI--GKGVDIGSLPPVCT-DLLTI-GAGTIVRKEVMLLG--YRAERGRLHTGPVT 162
Query: 2241 IGEGGFVGSRAAAMPGVRIENGGSLSSLS-LAMKEEI 2276
+G F+G+R+ I +G L S L + I
Sbjct: 163 LGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSI 199
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 |
| >gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-10
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 2116 SSGILAALACAAAKWVLVGKKKEGESVQIWSKGV-LMDTVWQAFRTLVGEYFVEMTSGSF 2174
+ G+ A L KW++ G+ K E +WS V L + W+ + ++ F+ G+
Sbjct: 529 AVGVGAFLILVERKWLVFGRLKPQEH-PLWSPFVWLHELHWKLYESVAVPNFLRPFRGTP 587
Query: 2175 LFVAWMKLMGAEIELGQGAYVDSMGAVLNPE--MVEMEGNGGCVGKEALLFGHIYEGDGG 2232
A ++L+G +I G+G Y+D E +V + G+ + + +++ H++E
Sbjct: 588 FLPAILRLLGVKI--GRGVYIDG---TDLTERDLVTI-GDDSTLNEGSVIQTHLFED--R 639
Query: 2233 KVKFGKIRIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKEEIV 2277
+K + IG+G +G A + GV + G L SL MK E V
Sbjct: 640 VMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEV 684
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-09
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 40/195 (20%)
Query: 836 VDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRT 895
V+ R+V+ + ++ PG+ GE+ SP +GYW E + FR + +
Sbjct: 350 VETRVVD-DDGNDVA-PGEVGEIVHRSPQLMLGYWDDPEKTAEAFRG--------GWFHS 399
Query: 896 GDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVL 954
GDLG + +G + R KD+I G NV S +VE+ + H AVIG+P+
Sbjct: 400 GDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEAL---YTHPAVAEVAVIGLPDP-- 454
Query: 955 STKGISVSDGSDQVGLVVIAEVRDGKPVDKD-VIENIKTRV----VEEHGVTVASVKLIK 1009
K I + V VV+ + G V +D +I + + R+ V + + V
Sbjct: 455 --KWI------EAVTAVVV--PKAGATVTEDELIAHCRARLAGFKVPKRVIFVDE----- 499
Query: 1010 PRTMSKTTSGKI-KR 1023
+ + SGKI KR
Sbjct: 500 ---LPRNPSGKILKR 511
|
Length = 523 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-09
Identities = 114/463 (24%), Positives = 184/463 (39%), Gaps = 89/463 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+ +L A+ +A ++ +R RV ++ P L V A G + A V VPV PP
Sbjct: 27 SRSDLAGAATAVAERVAGAR--------RVAVLATPTLATVLAVVGALIAGVPVVPV-PP 77
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPW-LHTDSWVKNSKNLL 622
D G A +I GA A L A P++P LH SW +
Sbjct: 78 D----SGVAER--RHILADSGAQAWLGPAPDDPAGL----PHVPVRLHARSWHRYP---- 123
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
E PD + +TSG+TG KGV+++ + ++ + + ++ T+ VLV
Sbjct: 124 --------EPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHG 175
Query: 683 LPQYHDMGLIGGLFTAM-VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN--FAF 739
LP +H GL+ G+ + +G P T Y S G F
Sbjct: 176 LPLFHVHGLVLGVLGPLRIGNRFVHTGRP------------TPEAYAQALSEGGTLYFGV 223
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT--RPFGLSQGVMAPGY 797
+ R+ + + R+ L + L+ + + R LT RP Y
Sbjct: 224 PTVWSRIAADPEAARA--LRGARLLVSGSAALPVPVFDRLAALTGHRP--------VERY 273
Query: 798 GLAENCVFVSC-AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE- 855
G+ E + +S A G+ +P G+V V+ R+V+ E + G+
Sbjct: 274 GMTETLITLSTRADGERRP-----------GWVGLPLAGVETRLVD-EDGGPVPHDGETV 321
Query: 856 GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIK- 913
GE+ + P+ GY R + + F + + RTGD+ + DG I GR
Sbjct: 322 GELQVRGPTLFDGYLNRPDATAAAFTAD-------GWFRTGDVAVVDPDGMHRIVGREST 374
Query: 914 DLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVL 954
DLI G + + ++E + H PG AV+GVP++ L
Sbjct: 375 DLIKSGGYRIGAGEIETAL---LGH--PGVREAAVVGVPDDDL 412
|
Length = 471 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-09
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY EL+ A+R+A +L + PGD V L+ + V A ++A VP+ P
Sbjct: 14 TYAELNERANRLARRLRARG---VGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPA 70
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV-GSWPNLPWLHTDSWVKNSKNLL 622
P +R + + + GA +L+ R + D
Sbjct: 71 YPAER-------LAFMLEDSGARVLLTDESLAPLARADQLPLVILEEELD---------A 114
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLI 661
+ DDL ++ +TSGSTG KGV + H G++
Sbjct: 115 EDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 5e-09
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68
IVG G SGL AY LAK G V +LEK +GG S
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKD-VLVLEKRDRIGGNAYSERDPG 42
|
Length = 66 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-09
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLI 692
QP+D + FTSGS G KGV+ +H L+ NV+ ++ T +S LP +H GL
Sbjct: 363 QPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLT 422
Query: 693 GGLFTAMVGGSTAILF-SPL 711
GLFT ++ G+ L+ SPL
Sbjct: 423 VGLFTPLLTGAEVFLYPSPL 442
|
Length = 718 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-09
Identities = 96/468 (20%), Positives = 164/468 (35%), Gaps = 119/468 (25%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y +L ++R+A+ L RK ++ GDRVLL+ + +A ++
Sbjct: 2 SYAQLSKRSNRVANFL---RKHGVRRGDRVLLMLPNVPELWEAMLAAIKL---------- 48
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
GAV I +T L T + +++ +
Sbjct: 49 --------------------GAVVIPAT------------TLL----TPADLRDRFSRGK 72
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
+ E++ DD L FTSG+TG K V+ TH Y + + W+
Sbjct: 73 PKAIVADETRADDPILLYFTSGTTGLPKLVLHTHVS-----------YPVGHLSTM-YWI 120
Query: 684 ---PQY--HDMGLIG-------GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH 731
P ++ G F G+T + F + +L + K+ T
Sbjct: 121 GLQPGDIHLNISSPGWAKHAWSSFFAPWNAGATVFGINYPRF--DARRYLGALEKFGVTT 178
Query: 732 SAGPNFAFE-LMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQ 790
P + + + L ++R + A EP+ ++R + +GL+
Sbjct: 179 FCAPPTVWRMFIQQDLAQYDVRLRE--------AVSAGEPLNPEVIERV---KKAWGLT- 226
Query: 791 GVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG 850
+ GYG E + + GQ + GR GY + +++ E E
Sbjct: 227 --IRDGYGQTETTAMIGNSPGQ--KVKPGSMGRPLPGY--------RVVLLDDEGKE--- 271
Query: 851 EPGKEGE--VWISSPSAGI--GYWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGK 905
P EGE + + G+ GY G E + FR Y RTGD R DG
Sbjct: 272 IPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRG--------GYYRTGDKAYRDEDGY 323
Query: 906 FFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEV 953
+ GR D+ + + +VE + EH AV+ P+ +
Sbjct: 324 LWFVGRADDVFKSSDYRISPFEVESAL---LEHPAVAEAAVVPSPDPI 368
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-09
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 24/135 (17%)
Query: 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITG 910
PG+ GE+ + P+ GY+ E + FR+ + RTGDLG + G +ITG
Sbjct: 363 PGETGEICVIGPAVFAGYYNNPEANAKAFRD--------GWFRTGDLGHLDARGFLYITG 414
Query: 911 RIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGL 970
R D+ I G NVY ++E E H AV+GVP+ V +VG+
Sbjct: 415 RASDMYISGGSNVYPREIE---EKLLTHPAVSEVAVLGVPDPVWG-----------EVGV 460
Query: 971 VVIAEVRDGKPVDKD 985
V RDG PVD+
Sbjct: 461 AVCV-ARDGAPVDEA 474
|
Length = 528 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-08
Identities = 101/461 (21%), Positives = 171/461 (37%), Gaps = 55/461 (11%)
Query: 474 YLKHWGTHRITQKKTLFTWINEEGVAVNQS-TYEELDANASRIAHKLLTSRKPVIKPGDR 532
Y G HR+ +++ T Q +Y EL+ A+R+AH+L + + P
Sbjct: 3053 YPLERGVHRLFEEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRL---IERGVGPDVL 3109
Query: 533 VLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTI 592
V + L+ V ++A VP+ P P +R L + GA +LS
Sbjct: 3110 VGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYML-------EDSGAQLLLS-- 3160
Query: 593 GYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKG 652
S +R+ + L D + +N N T P++L ++ +TSGSTG KG
Sbjct: 3161 --QSHLRLPLAQGVQVLDLD---RGDENYAEANPAIRTM--PENLAYVIYTSGSTGKPKG 3213
Query: 653 VMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLT 712
V I H L +++ M++ Y ++ + D + LF ++ G+ +L
Sbjct: 3214 VGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFD-VFVEELFWPLMSGARVVL----- 3267
Query: 713 FIKNPLLWLETMSKYRATHSAGPNF--AFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770
P W + +S G + A+ M++ +D R L + A
Sbjct: 3268 --AGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPA 3325
Query: 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ-GKPIILDWQGRVCCGYV 829
Q V + L +G ++ + CV G+PI C +
Sbjct: 3326 DLQQQVFAGLPLYNLYGPTEATITV---THWQCVEEGKDAVPIGRPI-----ANRACYIL 3377
Query: 830 DQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRG 889
D + + P G GE+++ GY R L+ F +
Sbjct: 3378 DGS--------LEPVPV------GALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGE 3423
Query: 890 RKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVE 929
R Y RTGDL R DG GR+ + + G + ++E
Sbjct: 3424 RLY-RTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIE 3463
|
Length = 5163 |
| >gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-08
Identities = 63/277 (22%), Positives = 103/277 (37%), Gaps = 76/277 (27%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAE---------- 72
+I IVGGG +GL+ AY LAK G+ VT+ E +GG+ S E E
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHE-VTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSD 59
Query: 73 ------LEEMD-SHKLALIDGSTGEFQDIKVADDYVSVISLT----------LELQDKAK 115
L+E+ KL + TG + D K + L L L DK
Sbjct: 60 EALLELLDELGLEDKLRWRETKTGYYVDGK-------LYPLGTPLELLRFPHLSLIDKF- 111
Query: 116 ESGRIGVHAV-SDLASDLTP-------TYLEDRGFKSVPKSV-------AYGYTASGYGF 160
R+G+ + + D +L + V + +G A
Sbjct: 112 ---RLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYAD---- 164
Query: 161 VQDMPYAYI------HEFTRTSMAGKIR-RFKGGYTSLWQKLSKYLP---TEVHCNSEVL 210
D+ A++ R S+ G+ +GG+ +L L++ + E+ + V
Sbjct: 165 --DVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVT 222
Query: 211 AIRRDSTTV-GVDVKHSNGECEVMEFDKIIISGAFPV 246
++ D V GV+V E +FD +I + P+
Sbjct: 223 SVVIDGGGVTGVEVDG-----EEEDFDAVISTAPPPI 254
|
Length = 434 |
| >gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-08
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1084 EFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCI 1143
E L+ +V+E GIP ++ D L G+DS+ V +L + GV + D+F +
Sbjct: 1 ERLREIVAEVLGIP-DEIDPDDDLFDLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTL 59
Query: 1144 ADLASF 1149
+LA++
Sbjct: 60 GELAAY 65
|
A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Vibrio anguillarum angR has the attachment serine replaced by an alanine. Length = 66 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-08
Identities = 84/335 (25%), Positives = 131/335 (39%), Gaps = 88/335 (26%)
Query: 643 TSGSTGDAKGVMITH-------GGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695
TSG+TG KG GL+ V ++ T+L + P +H G L
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAGLLSRVPF-----RAGETTLLPA--PMFHATGW-AHL 266
Query: 696 FTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATH-SAGPNFAFELMVRRLESSKD 751
AM GST +L F P LE ++K++AT P +M+ R+
Sbjct: 267 TLAMALGSTVVLRRRFDPEAT-------LEDIAKHKATALVVVP-----VMLSRILDLGP 314
Query: 752 KVRS-FDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY 810
+V + +D SS+K + V+ + R +E FG V+ YG E F + A
Sbjct: 315 EVLAKYDTSSLKIIFVSGSALSPELATRALEA---FG---PVLYNLYGSTE-VAFATIAT 367
Query: 811 GQGKPIILDWQ------GRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS 864
+ D GR G V ++I++ E E+ G G +++ +
Sbjct: 368 PE------DLAEAPGTVGRPPKG--------VTVKILD-ENGNEV-PRGVVGRIFVGNGF 411
Query: 865 AGIGYWGREELSQITFRNELQNNRGRK----YTRTGDLGRI-IDGKFFITGRIKDLIIVA 919
GY + R ++ +GD+G DG F+ GR D+I+
Sbjct: 412 PFEGY---------------TDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSG 456
Query: 920 GRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEE 952
G NV+ A+VE + P AVIGV +E
Sbjct: 457 GENVFPAEVEDLLAG-----HPDVVEAAVIGVDDE 486
|
Length = 549 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-08
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 834 PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI--GYWGREELSQITFRNELQNNRGRK 891
P V+ IV+ E +E E G EG + I P G+ +G E T+ ++
Sbjct: 411 PGVEPAIVDEEGNEV--EGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPG----- 463
Query: 892 YTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIG 948
Y TGD R DG ++I GR+ D+I V+G + +A+VE + H P AV+G
Sbjct: 464 YYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESAL---VSH--PAVAEAAVVG 518
Query: 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLI 1008
P+EV KG ++ V ++DG ++ + +K V +E G +A+ I
Sbjct: 519 KPDEV---KGEAI------YAFVT---LKDGVEPSDELRKELKKHVRKEIG-PIATPDEI 565
Query: 1009 KPRT-MSKTTSGKIKR 1023
+ KT SGKI R
Sbjct: 566 IFVPGLPKTRSGKIMR 581
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-08
Identities = 93/445 (20%), Positives = 157/445 (35%), Gaps = 76/445 (17%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
Y EL+ A+R+AH L + + P V + ++ V A ++A VP+ P
Sbjct: 538 DYAELNRRANRLAHAL---IERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPE 594
Query: 564 DPLQRGGQALLKIENISKSCGAVAILST--IGYHSAVRVGSWPNLPWLHTDSWVKNSKNL 621
P +R L + G +LS +G + G L +W++
Sbjct: 595 YPAERLAYML-------EDSGVQLLLSQSHLGRKLPLAAGV-QVLDLDRPAAWLEGYSE- 645
Query: 622 LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK-STSKTVLV 680
EN TE P++L ++ +TSGSTG KG H L + + M++ Y TVL
Sbjct: 646 --ENPG--TELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQ 701
Query: 681 SWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE 740
P D+ + + M G + +P +E +++
Sbjct: 702 K-TPFSFDVSVWEFFWPLMSGARLVVAAPGDHR--DPAKLVELINREGVD-------TLH 751
Query: 741 LMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLA 800
+ L++ +S++ ++ + E + ++ L Q + YG
Sbjct: 752 FVPSMLQAFLQDEDVASCTSLRRIVCSGEALPADAQEQVFAK-----LPQAGLYNLYGPT 806
Query: 801 ENCVFVSC---------AYGQGKPI------ILDWQGRVCCGYVDQNDPDVDIRIVNPET 845
E + V+ + G+PI ILD P
Sbjct: 807 EAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPV-----------------PV- 848
Query: 846 SEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDG 904
G GE++++ GY GR L+ F R Y RTGDL R DG
Sbjct: 849 -------GVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMY-RTGDLARYRADG 900
Query: 905 KFFITGRIKDLIIVAGRNVYSADVE 929
GRI + + G + ++E
Sbjct: 901 VIEYAGRIDHQVKLRGLRIELGEIE 925
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-08
Identities = 99/497 (19%), Positives = 164/497 (32%), Gaps = 120/497 (24%)
Query: 458 EELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAV----NQSTYEELDANAS 513
E V ++ Y H++ + + T E A+ Q +Y EL+ A+
Sbjct: 3075 HERRQVLHAWNATAAAYPSERLVHQLIEAQVART---PEAPALVFGDQQLSYAELNRRAN 3131
Query: 514 RIAHKLLTSRKPVIKPGDRVLL-VYVP-GLDFVDAFFGCMRAKVLPVPVLPPDPLQR--- 568
R+AH+L+ I G VL+ V V ++ + A ++A VP+ P P +R
Sbjct: 3132 RLAHRLIA-----IGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAY 3186
Query: 569 -----GGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
G + LL ++ + A A + + G N P
Sbjct: 3187 MIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM----------- 3235
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
++L ++ +TSGSTG KGV + HG L + W+
Sbjct: 3236 ----------GENLAYVIYTSGSTGKPKGVGVRHGAL----------------ANHLCWI 3269
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH-SAGPNFAFELM 742
+ +++ +LF +F +L T+ + E +
Sbjct: 3270 AEAYELD----------ANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEEL 3319
Query: 743 VRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV------------ELTRPFGLSQ 790
+ + + + + F + ++ A ++ +V ++ R L
Sbjct: 3320 WQAIHAHRISIACFPPAYLQQFAEDAGGADCASLDIYVFGGEAVPPAAFEQVKRK--LKP 3377
Query: 791 GVMAPGYGLAENCVFVSCAYGQGK---------PIILDWQGRVCCGYV-DQNDPDVDIRI 840
+ GYG E V + G PI GR YV D
Sbjct: 3378 RGLTNGYGPTE-AVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSI--YVLDGQ-------- 3426
Query: 841 VNPETSEEIGEP---GKEGEVWISSPSAGIGYWGREELSQITF-RNELQNNRGRKYTRTG 896
P G GE++I GY R L+ F + + GR Y RTG
Sbjct: 3427 ---------LNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLY-RTG 3476
Query: 897 DLGRI-IDGKFFITGRI 912
DL R DG GRI
Sbjct: 3477 DLARYRADGVIEYLGRI 3493
|
Length = 3956 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 6e-08
Identities = 52/233 (22%), Positives = 85/233 (36%), Gaps = 38/233 (16%)
Query: 504 TYEELDANASRIAHKLLTSRKPV-IKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP 562
TY E+D ++++A L +KPGD V L+ F+ + G + P L
Sbjct: 5 TYAEVDKRSNQVARAL---LAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGC-PTAFLN 60
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTD--SWVKNSKN 620
+ R G L + + CGA +++ AV LP L S
Sbjct: 61 TN--IRSGSLL----HCFRCCGARVLVADPELLEAVE----EILPALRAMGVRVFYLSHT 110
Query: 621 LLAENVVCF-----------------TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN 663
E V+ + +TSG+TG K I+H ++
Sbjct: 111 SPPEGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQC 170
Query: 664 VKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTF 713
++ T+ V+ + LP YH G + G+ + G+T +L FS F
Sbjct: 171 SGMLSLC-GVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQF 222
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 6e-08
Identities = 90/376 (23%), Positives = 141/376 (37%), Gaps = 62/376 (16%)
Query: 595 HSAVRVGSWPNLPWLHTDS--WVKNSKNLLA---ENVVCFTESQPDDLCFLQFTSGSTGD 649
H+ + G P + ++ DS W + LA + F + PDDL L FTSG++GD
Sbjct: 111 HAELLDGLDPGVRVINVDSPAW----ADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGD 166
Query: 650 AKGVMITHGGL-IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL- 707
K V TH + V L ++ VS +P +H ++ G A+ G++ L
Sbjct: 167 PKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVS-MPLFHSNAVMAGWAVALAAGASIALR 225
Query: 708 --FSPLTFIKNPLLWLETMSKYRATHS--AGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763
FS F L + +Y AT++ G ++ L D + ++
Sbjct: 226 RKFSASGF-------LPDVRRYGATYANYVGKPLSYVLATPERPDDAD-------NPLRI 271
Query: 764 LM--VAAEPVRQTTVKRF-VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKP--IIL 818
+ A +RF + FG ++G G + A G P I+
Sbjct: 272 VYGNEGAPGDIARFARRFGCVVVDGFGSTEG----GVAITRTPDTPPGALGPLPPGVAIV 327
Query: 819 DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQI 878
D C P D E IGE V + P GY+ E
Sbjct: 328 DPDTGTECP------PAEDADGRLLNADEAIGE-----LVNTAGPGGFEGYYNDPE---- 372
Query: 879 TFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTE 937
+ + RG Y +GDL R DG + GR+ D + V G N+ +A +E+ +
Sbjct: 373 ---ADAERMRGGVY-WSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILL---R 425
Query: 938 HIRPGCCAVIGVPEEV 953
+ AV VP+ V
Sbjct: 426 YPDATEVAVYAVPDPV 441
|
Length = 529 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 8e-08
Identities = 80/326 (24%), Positives = 131/326 (40%), Gaps = 80/326 (24%)
Query: 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ--- 685
F +P+D+ + +TSG+TG KGV++THG LI NV K V +S+LP
Sbjct: 215 FRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHI 274
Query: 686 YHDMGLIGGLFTAMVGGSTAILF---------------SPLTFIKNPLLWLETMSKYRAT 730
Y + I M+ A+ F P F P L+
Sbjct: 275 YERVNQI-----VMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNA 329
Query: 731 -HSAGP------NFAFELMVRRLESSK-----------DKVRSFDLSSMKFLMVAAEPVR 772
+G N A+ + LE+ K +K+++ ++F+ A P+
Sbjct: 330 VKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPL- 388
Query: 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAE-NCVFVSCAYGQGKPIILDWQGRVCCGYVDQ 831
V F+ + FG G + GYG+ E +CV +G G+V
Sbjct: 389 SPDVMEFLRIC--FG---GRVLEGYGMTETSCVISGMD-----------EGDNLSGHVGS 432
Query: 832 NDPDVDIRIVN-PE---TSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNN 887
+P ++++V+ PE TSE+ +P GE+ + P GY+ E ++ E+ +
Sbjct: 433 PNPACEVKLVDVPEMNYTSED--QPYPRGEICVRGPIIFKGYYKDEVQTR-----EVIDE 485
Query: 888 RGRKYTRTGDLG--------RIIDGK 905
G + TGD+G +IID K
Sbjct: 486 DG--WLHTGDIGLWLPGGRLKIIDRK 509
|
Length = 651 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-07
Identities = 89/420 (21%), Positives = 167/420 (39%), Gaps = 51/420 (12%)
Query: 502 QSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVL 561
+ TY EL+ A+R+AH+L+ + P V + L+ V ++A VP+
Sbjct: 1599 ELTYGELNRRANRLAHRLIALG---VGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLD 1655
Query: 562 PPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAV--RVGSWPNLPWLHTD---SWVK 616
P P +R IE+ + +L T S + R+ L L D W++
Sbjct: 1656 PEYPRER---LAYMIED-----SGIELLLT---QSHLQARLPLPDGLRSLVLDQEDDWLE 1704
Query: 617 NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK 676
+ + P +L ++ +TSGSTG KG HG L++ + ++ Y+ ++
Sbjct: 1705 GYSDSNPAVNL-----APQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAA 1759
Query: 677 TVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
V++ + D+ + LF ++ G+ ++ P ++P ++ + + + T
Sbjct: 1760 DVVLQFTSFAFDVS-VWELFWPLINGARLVIAPPGAH-RDPEQLIQLIERQQVTTLHFVP 1817
Query: 737 FAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPG 796
+ +++ E + S++ ++ E + ++ ++E GL
Sbjct: 1818 SMLQQLLQMDE------QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFN-----L 1866
Query: 797 YGLAENCVFVS---CAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853
YG E V V+ C D +GR + Q ++ I+ + S G
Sbjct: 1867 YGPTETAVDVTHWTCRRK-------DLEGRDSVP-IGQPIANLSTYIL--DASLNPVPIG 1916
Query: 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRI 912
GE+++ GY R L+ F + G + RTGDL R DG GRI
Sbjct: 1917 VAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRI 1976
|
Length = 3956 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-07
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 18/175 (10%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y E+ +A+ L R+ +KPGD V + + A + A +P+
Sbjct: 485 SYREMREQVVALANLL---RERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTG 541
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
P R ++ + + +++T R P+L L ++ L
Sbjct: 542 YPDDR-------LKMMLEDARPSLLITTADQ--LPRFADVPDLTSLCYNAP------LAP 586
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTV 678
+ SQP ++ FTSGSTG KGVM+ +++ + M+ Y T+ V
Sbjct: 587 QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDV 641
|
Length = 1296 |
| >gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-07
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68
+ ++G G +GL+ A LA+ G + VT+LEK VGG + E++
Sbjct: 4 YDVVVIGAGLNGLAAAALLARAGLK-VTVLEKNDRVGGRARTFELDG 49
|
Length = 487 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-07
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
++ ++G GP+GL+ A+ LA+ GY VT+ E GG
Sbjct: 142 KVAVIGAGPAGLTAAHRLARKGYD-VTIFEARDKAGG 177
|
Length = 457 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-07
Identities = 79/317 (24%), Positives = 134/317 (42%), Gaps = 52/317 (16%)
Query: 643 TSGSTGDAKGVMITHGGLIHNVK--LMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700
TSG+TG KG + G I +K L R +++ TV+V+ P +H G + A +
Sbjct: 204 TSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVA--PMFHAWGFSQLVLAASL 261
Query: 701 GGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVR-SF 756
T + F P L+ + ++RAT A +M R+ +VR +
Sbjct: 262 A-CTIVTRRRFDPEAT-------LDLIDRHRATGLA----VVPVMFDRIMDLPAEVRNRY 309
Query: 757 DLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPI 816
S++F + +R V F++ FG V+ Y E ++ A
Sbjct: 310 SGRSLRFAAASGSRMRPDVVIAFMD---QFG---DVIYNNYNATE-AGMIATATPADLRA 362
Query: 817 ILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELS 876
D GR G +IRI++ + E G+ G +++ + + GY
Sbjct: 363 APDTAGRPAEG--------TEIRILDQDFREV--PTGEVGTIFVRNDTQFDGY------- 405
Query: 877 QITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKTVESS 935
T + + G + +GD+G + + G+ F+ GR ++I+ G NVY +VEKT+ +
Sbjct: 406 --TSGSTKDFHDG--FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLAT- 460
Query: 936 TEHIRPGCCAVIGVPEE 952
H AVIGV +E
Sbjct: 461 --HPDVAEAAVIGVDDE 475
|
Length = 537 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-07
Identities = 84/363 (23%), Positives = 133/363 (36%), Gaps = 113/363 (31%)
Query: 642 FTSGSTGDAKGVMITHGGLIHNVKL---MR--------KRYKSTSKTVLVSWLPQYHDMG 690
+TSG+TG KGV GG + V L M + + S D+G
Sbjct: 240 YTSGTTGKPKGVQRDTGG--YAVALATSMDTIFGGKAGETFFCAS------------DIG 285
Query: 691 LIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRL 746
+ G ++ ++ G I++ L + +W + KY+ F+ +R L
Sbjct: 286 WVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRM----FSAPTAIRVL 341
Query: 747 ESSK-DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVF 805
+ +R DLSS++ L +A EP+ + T E
Sbjct: 342 KKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISE------------------------ 377
Query: 806 VSCAYGQGKPIILD--WQ------------------------GRVCCGYVDQNDPDVDIR 839
G P+I D WQ G GY +++
Sbjct: 378 -----ALGVPVI-DNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGY--------NVK 423
Query: 840 IVNPETSEEIGEPGKEGEVWISSP---SAGIGYWGREELSQITFRNELQNNRGRKYTRTG 896
++N T E G P ++G + I P WG ++ F + GR+ T
Sbjct: 424 LLNEVTGEPCG-PNEKGVLVIEGPLPPGCMQTVWGDDD----RFVKTYWSLFGRQVYSTF 478
Query: 897 DLG-RIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLS 955
D G R DG +FI GR D+I VAG + + ++E ES + H AV+GV + +
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIE---ESISSHPAVAEVAVVGVKDAL-- 533
Query: 956 TKG 958
KG
Sbjct: 534 -KG 535
|
Length = 629 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-07
Identities = 109/468 (23%), Positives = 171/468 (36%), Gaps = 85/468 (18%)
Query: 482 RITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL 541
R T ++ W + G Y EL A A+R+AH L R + P V +
Sbjct: 1142 RQTPERIALVW--DGG----SLDYAELHAQANRLAHYL---RDKGVGPDVCVAIAAERSP 1192
Query: 542 DFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG 601
+ ++A VP+ P P +R L G +L+ S + +
Sbjct: 1193 QLLVGLLAILKAGGAYVPLDPDYPAERLAYML-------ADSGVELLLT----QSHL-LE 1240
Query: 602 SWPN--------LPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGV 653
P L LH DSW + L D+L ++ +TSGSTG KGV
Sbjct: 1241 RLPQAEGVSAIALDSLHLDSWPSQAPGL---------HLHGDNLAYVIYTSGSTGQPKGV 1291
Query: 654 MITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTF 713
TH L ++ M+ Y VL+ P D+ + F ++ G +L P
Sbjct: 1292 GNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVS-VWECFWPLITGCRLVLAGPGEH 1350
Query: 714 IKNPLLWLETMSKYRAT--HSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPV 771
++P E + +Y T H P +L + D+ + +S++ L E +
Sbjct: 1351 -RDPQRIAELVQQYGVTTLHFVPP--LLQLFI-------DEPLAAACTSLRRLFSGGEAL 1400
Query: 772 RQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVS---C--AYGQGKPIILDWQGR--- 823
R ++ L Q + YG E + V+ C G+ PI GR
Sbjct: 1401 PAELRNRVLQR-----LPQVQLHNRYGPTETAINVTHWQCQAEDGERSPI-----GRPLG 1450
Query: 824 -VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRN 882
V C R+++ E + PG GE+ I GY GR L+ F
Sbjct: 1451 NVLC------------RVLDAEL--NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVP 1496
Query: 883 ELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVE 929
+ G + RTGD R DG GR+ + + G V +++
Sbjct: 1497 DPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQ 1544
|
Length = 4334 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-07
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 502 QSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVL 561
Q +Y EL+ A+R+ H L + V +P V L+ GLD + G +A +P+
Sbjct: 3745 QWSYAELNRAANRLGHALRAAGVGVDQP---VALLAERGLDLLGMIVGSFKAGAGYLPLD 3801
Query: 562 PPDPLQRGGQALLKIENISKS----CG------AVAILSTIGYHSAVRVGSWPNLPWLHT 611
P P QR L +I +S++ C A A+L +G + R+ W +
Sbjct: 3802 PGLPAQR----LQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEVQ---- 3853
Query: 612 DSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN 663
+ + + N + S PD+L ++ +TSGSTG KGVM+ G+++N
Sbjct: 3854 ------AGEVASHNPGIY--SGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNN 3897
|
Length = 4334 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-07
Identities = 73/300 (24%), Positives = 124/300 (41%), Gaps = 40/300 (13%)
Query: 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDM 689
++ P+D+ + FTSG+ KGV +TH L+ N + K + V++S+LP +H
Sbjct: 178 SDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAY 237
Query: 690 GL-IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLES 748
G LF + G ++PL P +E + + + T F+ + L++
Sbjct: 238 GFNSCTLFPLLSGVPVVFAYNPL----YPKKIVEMIDEAKVTFLGSTPVFFDYI---LKT 290
Query: 749 SKDKVRSFDLSSMKFLMVAAE----PVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCV 804
+K + L S++F+++ + + Q +K F + L Q GYG E C
Sbjct: 291 AKKQESC--LPSLRFVVIGGDAFKDSLYQEALKTFPHIQ----LRQ-----GYGTTE-CS 338
Query: 805 FVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS 864
V P + C G + +D+ IV+ ET + G+ G V S
Sbjct: 339 PVITINTVNSP-----KHESCVGMPIRG---MDVLIVSEETKVPVSS-GETGLVLTRGTS 389
Query: 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNV 923
GY G + EL G + TGDLG + G+ F+ GR+ + + V
Sbjct: 390 LFSGYLGEDFGQGFV---ELG---GETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMV 443
|
Length = 539 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-07
Identities = 105/506 (20%), Positives = 184/506 (36%), Gaps = 103/506 (20%)
Query: 482 RITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL 541
+ KT + + GV V + +Y EL+ +R A+ + I+ GD+V L
Sbjct: 18 DVYGHKTALIFESSGGV-VRRYSYLELNEEINRTANLFYSLG---IRKGDKVALHLDNCP 73
Query: 542 DFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIEN--ISKSCGAVAILSTIG----YH 595
+F+ +FG + + VP+ LL+ E+ I ++ A ++++ Y
Sbjct: 74 EFIFCWFGLAKIGAIMVPI---------NARLLREESAWILQNSQASLLVTSAQFYPMYR 124
Query: 596 SAVRVGSWP---------NLPWLHTDSWVKNSKNLLAENVVCFTESQP---DDLCFLQFT 643
+ + P LP D V + L A+ + P DD + FT
Sbjct: 125 QIQQEDATPLRHICLTRVALP---ADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFT 181
Query: 644 SGSTGDAKGVMITHGGLIHNVKLMRKRYKS-----TSKTVLVSWLPQYH-DMGLIGGLFT 697
SG+T KGV+ITH L Y + V ++ +P +H D +
Sbjct: 182 SGTTSRPKGVVITHYNL-----RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAA 236
Query: 698 AMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRL--ESSKDKV 753
G + +L +S F + KYRAT + +M+R L +
Sbjct: 237 FSAGATFVLLEKYSARAFWGQ-------VCKYRATITE----CIPMMIRTLMVQPPSAND 285
Query: 754 RSFDLSSMKFLMVAAEPVRQTTVKRF-VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
R L + F + ++ + +RF V L YG+ E V +
Sbjct: 286 RQHCLREVMFYLNLSDQEKDAFEERFGVRLLT-----------SYGMTETIVGIIGDRPG 334
Query: 813 GK---PIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS-PSAGI- 867
K P I GR Y + I + + + + G+ GE+ I P I
Sbjct: 335 DKRRWPSI----GRPGFCY--------EAEIRD-DHNRPL-PAGEIGEICIKGVPGKTIF 380
Query: 868 -GYWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGRIKDLIIVAGRNVYS 925
Y+ + + + + TGD G +G F+ R ++I G NV
Sbjct: 381 KEYYLDPKATAKVLEAD-------GWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSC 433
Query: 926 ADVEKTVESSTEHIRPGCCAVIGVPE 951
++E + + H + V+G+ +
Sbjct: 434 VELENIIAT---HPKIQDIVVVGIKD 456
|
Length = 517 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-06
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
R+ ++GGGP+GLS AY L ++G+ VT+ E +GGM
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAGPKLGGM 175
|
Length = 564 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-06
Identities = 83/363 (22%), Positives = 142/363 (39%), Gaps = 67/363 (18%)
Query: 642 FTSGSTGDAKGV----MITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFT 697
TSG+TG KGV + + L R R ++ S+ + +P +H +GL + T
Sbjct: 181 LTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVA--MPMFHGLGLGMLMLT 238
Query: 698 AMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFD 757
+GG T + + E + H A A +++ R+ +VR+ +
Sbjct: 239 IALGG---------TVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARN 289
Query: 758 -LSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPI 816
L ++ +M + + + T +RF++ +G ++ GYG E V
Sbjct: 290 PLPQLRVVMSSGDRLDPTLGQRFMD---TYG---DILYNGYGSTE----VGIGALATPAD 339
Query: 817 ILDWQ---GRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGRE 873
+ D G+ G +RI++ + +G P G +++ AG Y
Sbjct: 340 LRDAPETVGKPVAG--------CPVRILD-RNNRPVG-PRVTGRIFVGGELAGTRYTDGG 389
Query: 874 ELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKTV 932
+ + T TGD+G + + G+ FI GR D+II G NVY VE +
Sbjct: 390 GKAVVD-----------GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENAL 438
Query: 933 ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIEN-IK 991
+ H AVIGVP+E + L + G VD + + +K
Sbjct: 439 AA---HPAVADNAVIGVPDERFGHR------------LAAFVVLHPGSGVDAAQLRDYLK 483
Query: 992 TRV 994
RV
Sbjct: 484 DRV 486
|
Length = 516 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-06
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 52/158 (32%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY EL+ A+R+A +L R + P RV + D V A ++A VP+ P
Sbjct: 26 TYAELNRRANRLAARL---RAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDPA 82
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
P +R L+ I + R+
Sbjct: 83 YPPER--------------------LAYILEDAGARL----------------------- 99
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLI 661
V+ + PDDL ++ +TSGSTG KGV I H
Sbjct: 100 --VL----TDPDDLAYVIYTSGSTGRPKGVAIEHRNAA 131
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-06
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 23 RIGIVGGGPSGLSTAYALAKLG-YRNVTLLEKYHTVGGMCESVEIE----EAGAE 72
+I I+GGG +GLS AY L K G VTL E VGG+ +V+I+ E G
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPH 56
|
Length = 444 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 834 PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI--GYWGREELSQITFRNELQNNRGRK 891
++ +V+ E + PG+ G + I P G+ +G E T+ +
Sbjct: 422 FGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPF-----PG 475
Query: 892 YTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCC--AVIG 948
Y TGD R DG +ITGR+ D+I V+G + +A++E + H P AV+G
Sbjct: 476 YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESAL---VSH--PAVAEAAVVG 530
Query: 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLI 1008
+P+++ KG ++ V ++DG D ++ + ++ V +E G +A I
Sbjct: 531 IPDDI---KGQAI------YAFVT---LKDGYEPDDELRKELRKHVRKEIG-PIAKPDKI 577
Query: 1009 KP-RTMSKTTSGKIKR 1023
+ + KT SGKI R
Sbjct: 578 RFVPGLPKTRSGKIMR 593
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-06
Identities = 95/435 (21%), Positives = 145/435 (33%), Gaps = 66/435 (15%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY E IA LL + ++++ ++ M A V PV P
Sbjct: 27 TYAEALRQVRAIAQALL-DLG--LSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPA 83
Query: 564 DPLQRGGQALLKIENISKSC--GAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNL 621
L + K+ +I GAV + A+ +P +
Sbjct: 84 YSL--LSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIA 141
Query: 622 LAENVVCFTES----------QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY 671
A ++ + PD + FTSGSTG K V+ TH L N ++ + +
Sbjct: 142 FAA-LLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCW 200
Query: 672 K--STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFS--PLTFIKNPLLWLETMSKY 727
+ VLV WLP H G + G T + P+ P L+ ET+
Sbjct: 201 PFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPV-----PGLFEETLRNL 255
Query: 728 R----ATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT 783
R + P FE++V LE R F ++ L A + Q R L
Sbjct: 256 REVSPTVYFNVPK-GFEMLVDALERDAALRRRF-FKRLRLLFYAGAALPQDVWDRLQALA 313
Query: 784 RPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNP 843
+ M G G E + + R G + P ++++V P
Sbjct: 314 VRTTGERIPMTSGLGATETAPTATFVHWP--------TDRS--GVIGLPAPGTELKLV-P 362
Query: 844 ETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID 903
G + EV + P+ GYW EL+ F E + R GD R +D
Sbjct: 363 N--------GGKLEVRVKGPNVTPGYWRDPELTAEAFDEE-------GFYRIGDAVRFVD 407
Query: 904 ------GKFFITGRI 912
G F GR+
Sbjct: 408 PDDPERGLVF-DGRV 421
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 3e-06
Identities = 85/393 (21%), Positives = 148/393 (37%), Gaps = 58/393 (14%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM-RKRYKSTSKTVLVSWLPQYHDMGLIG 693
D L + +TSG+TG K + H + V M RK + T + + Y GL
Sbjct: 145 DALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGN 204
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV 753
++ + G +A++ + L + PNF F ++ S D
Sbjct: 205 SVWFPLATGGSAVI-NSAPVTPEAAAILSARFGPSVLYGV-PNF-FARVID--SCSPDSF 259
Query: 754 RSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG 813
RS ++ ++ A E + +R +E + G+ + G FVS +
Sbjct: 260 RS-----LRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQT----FVSNRVDEW 310
Query: 814 KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGRE 873
+ L GRV P +IR+V P+ + PG EG++W+ P+ GYW R
Sbjct: 311 RLGTL---GRVL--------PPYEIRVVAPDGTT--AGPGVEGDLWVRGPAIAKGYWNRP 357
Query: 874 ELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFIT--GRIKDLIIVAGRNVYSADVEK 930
+ N G TR R+ ID ++T R D ++ G NV +VE+
Sbjct: 358 D--------SPVANEGWLDTRD----RVCIDSDGWVTYRCRADDTEVIGGVNVDPREVER 405
Query: 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENI 990
+ E AV+ V E S G+ + ++A +D V+ ++
Sbjct: 406 LI---IEDEAVAEAAVVAVRE----------STGASTLQAFLVATSGAT--IDGSVMRDL 450
Query: 991 KTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
++ + + +T +GK+ R
Sbjct: 451 HRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVR 483
|
Length = 705 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-06
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 25/135 (18%)
Query: 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNE 883
VC G + P V+++I E+S + G + P +GYWG Q +
Sbjct: 364 VCVG---KPAPHVELKIGLDESS-------RVGRILTRGPHVMLGYWG-----QNSETAS 408
Query: 884 LQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG 942
+ +N G + TGD+G I G ++ GR D I G NVY +VE + ++H PG
Sbjct: 409 VLSNDG--WLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVL---SQH--PG 461
Query: 943 C--CAVIGVPEEVLS 955
V+GVP+ L+
Sbjct: 462 VASVVVVGVPDSRLT 476
|
Length = 563 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-06
Identities = 61/259 (23%), Positives = 96/259 (37%), Gaps = 62/259 (23%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y EL+A A+R AH +R + GD V L+ +++ A+ G AK+ V L
Sbjct: 64 SYAELNARANRYAHWAA-ARG--VGKGDVVALLMENRPEYLAAWLGL--AKLGAVVAL-- 116
Query: 564 DPL---QRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLP---WLHTDSWVKN 617
L QRG L N+ + I+ + + P W+ + +
Sbjct: 117 --LNTQQRG-AVLAHSLNLVDA--KHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDD 171
Query: 618 SKNLLAENVVCFTESQPD------------DLCFLQFTSGSTGDAKGVMITH-------- 657
E++ P D F +TSG+TG K +++H
Sbjct: 172 P--EGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMG 229
Query: 658 --GGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLT 712
GGL+ + T VL LP YH+ G + + G+T L FS
Sbjct: 230 GFGGLL----------RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASR 279
Query: 713 FIKNPLLWLETMSKYRATH 731
F W + + +YRAT
Sbjct: 280 F------WDD-VRRYRATA 291
|
Length = 600 |
| >gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 5e-06
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE 65
+ I+G GP+GL+ AY L K GY VT+LE VGG+ +V
Sbjct: 2 TNKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVGGISRTVT 47
|
Length = 479 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-06
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 627 VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQY 686
V F PDD + FTSGS G KGV+++H L+ N + R + + + + LP +
Sbjct: 785 VYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVF 844
Query: 687 HDMGLIGGLFTAMVGGSTAILF-SPL 711
H GL GGL ++ G L+ SPL
Sbjct: 845 HSFGLTGGLVLPLLSGVKVFLYPSPL 870
|
Length = 1140 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-06
Identities = 91/374 (24%), Positives = 135/374 (36%), Gaps = 84/374 (22%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693
D L FTSG+TG K V +HG L + + +R+ T V +P +H ++
Sbjct: 149 AMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMA 208
Query: 694 GLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSK 750
G A+ G+ L FS F L+ + +Y AT+ ++ E
Sbjct: 209 GWAPAVASGAAVALPAKFSASGF-------LDDVRRYGATYFNYVGKPLAYILATPERPD 261
Query: 751 DKVRSFDLSSMKFLMVAAEPVR-----QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVF 805
D A P+R + + + E +R FG + GYG +E V
Sbjct: 262 D---------------ADNPLRVAFGNEASPRDIAEFSRRFGCQ---VEDGYGSSEGAVI 303
Query: 806 VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEE-----IGEPGKE----- 855
V G I GR + I NPET E G
Sbjct: 304 VVREPGTPPGSI----GR----------GAPGVAIYNPETLTECAVARFDAHGALLNADE 349
Query: 856 --GEVWISSPSAGI-GYWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGR 911
GE+ ++ + GY+ E + R+ G Y +GDL R DG + GR
Sbjct: 350 AIGELVNTAGAGFFEGYYNNPEATAERMRH------GM-Y-WSGDLAYRDADGWIYFAGR 401
Query: 912 IKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLV 971
D + V G N+ +A +E+ + R AV VP+E DQV
Sbjct: 402 TADWMRVDGENLSAAPIERILLRHPAINR---VAVYAVPDER----------VGDQVMAA 448
Query: 972 VIAEVRDGKPVDKD 985
+ +RDG D D
Sbjct: 449 L--VLRDGATFDPD 460
|
Length = 540 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-05
Identities = 103/428 (24%), Positives = 172/428 (40%), Gaps = 72/428 (16%)
Query: 639 FLQFTSGSTGDAKGVMITHGGLIHNVKL---MRKRYKSTSKTVLVSWLPQYHDMGLIGG- 694
++ +TSG+TG KGV GG + V L M + + V+ S D+G + G
Sbjct: 236 YILYTSGTTGKPKGVQRDVGG--YAVALALSMWAIFGIRAGQVMFS----ASDVGWVVGH 289
Query: 695 ---LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKD 751
++ ++ G+ +L+ L +P +W + +Y F+ +R L+
Sbjct: 290 SYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTM----FSAPTAIRVLKKQDA 345
Query: 752 K-VRSFDLSSMKFLMVAAEPVRQTTVKRFVE-LTRP-----FGLSQG--VMAPGYGLAEN 802
+R DLSS+ +L +A EP+ + T + L +P + G V+A GL
Sbjct: 346 AWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDL- 404
Query: 803 CVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862
KP+ L G GY +R+++ T G P ++G + +
Sbjct: 405 -----------KPVKLGSPGLPMYGY--------HLRVLDEATGRPCG-PNEKGVLTVVP 444
Query: 863 ---PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGRIKDLIIV 918
P WG + T+ + + R + D G R DG FI GR D+I V
Sbjct: 445 PLPPGCLSTVWGDDARFLKTYWSHFK----RPLYSSFDWGIRDEDGYTFILGRTDDVINV 500
Query: 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV-R 977
AG + + ++E++V S H AV+GV +E+ G V ++ E
Sbjct: 501 AGHRLGTREIEESVSS---HPSVAEVAVVGVHDEL---------KGQVAVVFAILKESDS 548
Query: 978 DGKPVDKDVIENIKTRVVEEH-GVTVASVKLIKPRTMSKTTSGKIKR--FECLKQFVD-G 1033
G D +E V G ++ + KT SGK+ R + L + D G
Sbjct: 549 AGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGRDPG 608
Query: 1034 TLNTVPEP 1041
L T+ +P
Sbjct: 609 DLTTIDDP 616
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-05
Identities = 99/469 (21%), Positives = 185/469 (39%), Gaps = 117/469 (24%)
Query: 600 VGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDL---CFLQFTSGSTGDAKGVMIT 656
+ + P +P +T SW K + N F E P + ++ +TSG+TG++K V+ +
Sbjct: 218 IETIPTIP--NTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRS 275
Query: 657 HGGLI-----HNVKLMRK----RYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL 707
+G + + ++ K S S + W+ +H G L+ ++ G+T ++
Sbjct: 276 NGPHLVGLKYYWRSIIEKDIPTVVFSHSS---IGWV-SFH-----GFLYGSLSLGNTFVM 326
Query: 708 FSPLTFIKNPL----LWLETMSKYRATHSAGPNFAFELMVRRL---ESSKDKVRS-FDLS 759
F IKN LW T+ K++ TH+ +R L + +RS +DLS
Sbjct: 327 FEG-GIIKNKHIEDDLW-NTIEKHKVTHT----LTLPKTIRYLIKTDPEATIIRSKYDLS 380
Query: 760 SMKFLMVAAEPVRQTTV-----KRFVELTRPFGLSQGVMA----------PGYGLAENCV 804
++K + E + ++ K ++ +R +G ++ + P +
Sbjct: 381 NLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSI 440
Query: 805 FVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS--- 861
F+ KP IL G+ EIGE ++
Sbjct: 441 FI-------KPSILSEDGKEL-------------------NVNEIGE--------VAFKL 466
Query: 862 --SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFF-ITGRIKDLIIV 918
PS ++ +E + F ++ Y +GDLG + ++ I R D I +
Sbjct: 467 PMPPSFATTFYKNDEKFKQLF------SKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI 520
Query: 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRD 978
+G V +E ++ + CC+ IG+ + I GL+V+ + +
Sbjct: 521 SGNKVQLNTIETSILKHPLVLE--CCS-IGIYDPDCYNVPI---------GLLVLKQDQS 568
Query: 979 GKPVD----KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
+ +D K+ I NI T+ +E V +I + + KT +GKI R
Sbjct: 569 NQSIDLNKLKNEINNIITQDIESL--AVLRKIIIVNQ-LPKTKTGKIPR 614
|
Length = 647 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-05
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 31/165 (18%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDF--VDAFFGCMRAKVLPVPVL 561
TY +L ++ +A + + + P P ++V+ + + F G ++A +PV
Sbjct: 29 TYGQLKEDSDALAAFIDSLKLPDKSP----IIVF-GHMSPEMLATFLGAVKAGHAYIPVD 83
Query: 562 PPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNL 621
P +R + I ++K I++T LP V L
Sbjct: 84 VSSPAER----IEMIIEVAK---PSLIIAT------------EELPLEILGIPVITLDEL 124
Query: 622 ----LAENVVCFTES-QPDDLCFLQFTSGSTGDAKGVMITHGGLI 661
N F + + DD ++ FTSG+TG KGV I+H L+
Sbjct: 125 KDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169
|
Length = 503 |
| >gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG-------MCESVEIEEAGAE-LEEMD 77
IVG GPSGL+ AY LAK G + V + E+ + GG + + ++E E L+E
Sbjct: 30 IVGAGPSGLTAAYYLAKAGLK-VAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFG 88
|
Length = 257 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-05
Identities = 84/327 (25%), Positives = 136/327 (41%), Gaps = 75/327 (22%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY-----KSTSKTVLVSWLPQYHDM 689
DDL + +TSG+TGD KGVM THG L + + R S+LP H M
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIM 323
Query: 690 GL-IGGLFTA---MVG-GSTAIL-------------FSPLTFIKNPLLWLETMSKYRATH 731
+ +F A ++G GS L F P+ I P ++ +T+ K A
Sbjct: 324 EFGVTNIFLARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIF-DTIKK--AVE 380
Query: 732 SAGP----------NFAFELMVRRLESSKD------KVRSFDL------SSMKFLMVAAE 769
+ P + A++ +R L+ KD KV F ++ ++
Sbjct: 381 AKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKV--FSAPRAVLGGRVRAMLSGGG 438
Query: 770 PVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYV 829
P+ T + FV + FG+ + G+GL E C G + G + V
Sbjct: 439 PLSAAT-QEFVNVV--FGM----VIQGWGLTETV----CCGGIQRT------GDLEPNAV 481
Query: 830 DQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRG 889
Q V++++++ E + P GE+ + P GY+ +EEL++ E+ + G
Sbjct: 482 GQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTR-----EVLDEDG 536
Query: 890 RKYTRTGDLGRI-IDGKFFITGRIKDL 915
+ TGD+G I +G I GR+K L
Sbjct: 537 --WFHTGDVGSIAANGTLRIIGRVKAL 561
|
Length = 700 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-05
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESV 64
++ ++G GP+GL+ AY LA+ G+ VT+ E+ GG+ +++
Sbjct: 541 KVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKNI 581
|
Length = 1019 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-05
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 27/162 (16%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y ELDA A+R+A L R+ + P RV L L+ V ++A VP+ P
Sbjct: 2215 SYAELDARANRLARAL---RERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPE 2271
Query: 564 DPLQR-------GGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVK 616
PL+R G LL A+ +G A V W L D+
Sbjct: 2272 YPLERLHYMIEDSGIGLL--------LSDRALFEALGELPA-GVARWC----LEDDAAAL 2318
Query: 617 NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHG 658
+ + + S P +L +TSGSTG KGV+++HG
Sbjct: 2319 AAYSDAPLPFL----SLPQHQAYLIYTSGSTGKPKGVVVSHG 2356
|
Length = 4334 |
| >gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-05
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ + + I+GGG GLS AY LA+ G VT+LE GG
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAERGAD-VTVLEAGEAGGG 41
|
Length = 387 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-05
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFY----SSIG---FIFGKVEV 1625
A IG+ SI V +GAGV +G+ I G IG I V +
Sbjct: 111 TATIGKNVSIGP--------NVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTI 162
Query: 1626 QDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIG 1669
N VIG+ ++ +V+ D A + + Q G + IG
Sbjct: 163 YHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIG 206
|
Length = 338 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-05
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 834 PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYT 893
PD + I++ E G++GE+ IS PS GY E + F + Y
Sbjct: 325 PDSPLLIIDEEG--TKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAF---FTFDGQPAY- 378
Query: 894 RTGDLGRIIDGKFFITGRI 912
TGD G + DG F GRI
Sbjct: 379 HTGDAGYLEDGLLFYQGRI 397
|
Length = 503 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-05
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK-LMRKRYKSTSKTVLVSWLPQYHDMGLI 692
P+D+ + +TSGSTG KGVM+THG ++ V +M K V +++LP H + L
Sbjct: 249 PNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELA 308
Query: 693 GGLFTAMVGGSTAILF-SPLTFI 714
A VG AI + SPLT
Sbjct: 309 AESVMAAVGA--AIGYGSPLTLT 329
|
Length = 696 |
| >gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
+ IVG GP+GL+ A ALA+ G VTLLE+
Sbjct: 3 LDVAIVGAGPAGLALALALARAGLD-VTLLER 33
|
Length = 387 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALID 85
IVG GP+G S A LAK G V +LEK G A LEE+ I+
Sbjct: 8 IVGAGPAGSSAARRLAKAGLD-VLVLEKGSEPGAKPCCGGGLSPRA-LEELIPDFDEEIE 65
|
Length = 396 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-05
Identities = 76/332 (22%), Positives = 125/332 (37%), Gaps = 72/332 (21%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITH-------GGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
+ D+C + +TSG+TGD KGVMI++ G+I +K T K V +S+LP
Sbjct: 221 KKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAAL--TVKDVYLSYLPL 278
Query: 686 YHDMGLIGGLFTAMVGGSTAIL-------------FSPLTFIKNPLLWLETMSKYRATHS 732
H + G + P F P + S + S
Sbjct: 279 AHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLS 338
Query: 733 AGPNF-------AFELMVRRLESSKDKVRSFDL--------------SSMKFLMVAAEPV 771
G AF ++ + V + L +++ ++ A P+
Sbjct: 339 DGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPL 398
Query: 772 RQTTVKRFVELTRPFGLSQGVMAPGYGLAENC--VFVSCAYGQGKPIILDWQGRVCCGYV 829
+ V+ F+ + + QG YGL E+C FVS P LD G V
Sbjct: 399 -ASHVESFLRVVACCHVLQG-----YGLTESCAGTFVSL------PDELD-----MLGTV 441
Query: 830 DQNDPDVDIRIVN-PETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNR 888
P+VDIR+ + PE + GE+ I + GY+ RE+L++ +
Sbjct: 442 GPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLID------ 495
Query: 889 GRKYTRTGDLGRI-IDGKFFITGRIKDLIIVA 919
+ TGD+G +G I R K++ ++
Sbjct: 496 --GWLHTGDVGEWQPNGSMKIIDRKKNIFKLS 525
|
Length = 666 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 5e-05
Identities = 80/310 (25%), Positives = 119/310 (38%), Gaps = 55/310 (17%)
Query: 640 LQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699
L +TSG+T D KGV+I+H G + ++ + V + LP +H G TA
Sbjct: 191 LNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAA 250
Query: 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATH-SAGPN-FAFELMVRRLESSKDKVRSFD 757
GG++ + + P ++ + + + TH P F L L+ S
Sbjct: 251 RGGTSVCM----RHVTAPEIY-KNIEMHNVTHMCCVPTVFNILLKGNSLDLSPR------ 299
Query: 758 LSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPII 817
S ++ P VK+ L G VM YGL E G +
Sbjct: 300 -SGPVHVLTGGSPPPAALVKKVQRL----GFQ--VMH-AYGLTE---------ATGPVLF 342
Query: 818 LDWQG-------------RVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE-GEVWISSP 863
+WQ + G DVD++ N ET E + GK GE+ I
Sbjct: 343 CEWQDEWNRLPENQQMELKARQGVSILGLADVDVK--NKETQESVPRDGKTMGEIVIKGS 400
Query: 864 SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRN 922
S GY + + F++ N TGD+G I DG I R KD+II G N
Sbjct: 401 SIMKGYLKNPKATSEAFKHGWLN--------TGDVGVIHPDGHVEIKDRSKDIIISGGEN 452
Query: 923 VYSADVEKTV 932
+ S +VE +
Sbjct: 453 ISSVEVENVL 462
|
Length = 579 |
| >gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-05
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
+ ++GGG GLSTAY LA+ G VTLLE+
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLS-VTLLER 30
|
This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234 |
| >gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGA-------ELEEMDS 78
+VG GP+G S AY LA G R V LLEK GA EL+
Sbjct: 5 VVGAGPAGASAAYRLADKGLR-VLLLEKKSFPR------YKPCGGALSPRALEELDLPGE 57
Query: 79 HKLALIDGS-----TGEFQDIKVADDYVSVIS---LTLELQDKAKESG 118
+ L+ G+ G+ +I + + VI +L ++A+E+G
Sbjct: 58 LIVNLVRGARFFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAG 105
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-05
Identities = 114/510 (22%), Positives = 186/510 (36%), Gaps = 113/510 (22%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ EL+ ++++A+ ++ + GD V L L+FV + G AK+ L
Sbjct: 5 TFRELNEYSNKVAN-FFQAQG--YRSGDVVALFMENRLEFVALWLGL--AKIGVETALIN 59
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
L+ ++LL +SK A+ I L T S S +
Sbjct: 60 SNLRL--ESLLHCITVSK-AKAL-----IFNLLDP----------LLTQS----STEPPS 97
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
++ V F D L ++ +TSG+TG K +I H + + V+ L
Sbjct: 98 QDDVNFR----DKLFYI-YTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCL 152
Query: 684 PQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE 740
P YH G I G+ A++ GST ++ FS F W + + KY T + E
Sbjct: 153 PLYHSAGGIMGVGQALLHGSTVVIRKKFSASNF------WDDCV-KYNCTIV---QYIGE 202
Query: 741 L------MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
+ E K VR + +R ++FV R FG+ Q +
Sbjct: 203 ICRYLLAQPPSEEEQKHNVR----------LAVGNGLRPQIWEQFV---RRFGIPQ--IG 247
Query: 795 PGYGLAE-NCVFVSCAYGQGKPIILDWQGRV-CCGYVDQNDPDV-DIRI--VNPETSEEI 849
YG E N +++ V CG+ + P V IR+ V+ +T E I
Sbjct: 248 EFYGATEGNSS------------LVNIDNHVGACGFNSRILPSVYPIRLIKVDEDTGELI 295
Query: 850 ------------GEPGK-EGEVWISSPSAGI-GYWGREELSQITFRNELQNNRGRKYTRT 895
GEPG G++ + P GY ++ R+ + +G +
Sbjct: 296 RDSDGLCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEGATNKKIARDVFK--KGDSAFLS 353
Query: 896 GD-LGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVL 954
GD L G + R D G NV + +VE + + V GV EV
Sbjct: 354 GDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSNVLGLED---VVVYGV--EVP 408
Query: 955 STKGISVSDGSDQVGLVVIAEVRDGKPVDK 984
+G + G+ I + +D+
Sbjct: 409 GVEG--------RAGMAAIVDPERKVDLDR 430
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-05
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGF---IFGKVEVQDNS 1629
A IG C+I Q VTLG G G IG I G + + DN
Sbjct: 28 TAVIGDNCTIY--------QGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNV 79
Query: 1630 VIGSQSLVLPNSVVSRDV 1647
IG N+VV++DV
Sbjct: 80 KIG------ANAVVTKDV 91
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
N ++ IVG GP+GLS AY LA +GY VT+ E GG+
Sbjct: 278 EPEKKNKKVAIVGSGPAGLSAAYFLATMGYE-VTVYESLSKPGGV 321
|
Length = 604 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-05
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESV 64
++ ++G GP+GLS Y LA+ G+ VT+ EK GG+ +++
Sbjct: 539 KVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKNI 579
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIG 1632
A+IG I N +G +GDF I PG + G V + + + IG
Sbjct: 114 DARIGDNVII---NT-----GAVIGHDCVIGDFVHIAPG--VVLS---GGVTIGEGAFIG 160
Query: 1633 SQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGS 1670
+ + ++ + I+GA +V V G + +G+
Sbjct: 161 AGATIIQGVTIGAGAIIGAGAVV-TKDVPD-GSVVVGN 196
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197 |
| >gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-04
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 55/186 (29%)
Query: 759 SSMKFLMVAAEP----VRQTTVKRF-VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG 813
SS+K + AEP R+ +R ++ +GLS+ VM PG V C +
Sbjct: 198 SSLKIGVFGAEPWTQAQRREIERRLGIDALDIYGLSE-VMGPG-------VAFECVETKD 249
Query: 814 KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGRE 873
P I W+ Y + I++PET E + + G+ GE+ ++ + +E
Sbjct: 250 GPTI--WED---HFYPE---------IIDPETGEPLPD-GEIGELVFTTLT-------KE 287
Query: 874 ELSQITFRNELQNNRGRKYTRTGDLGRIIDGKF-------FITGRIKDLIIVAGRNVYSA 926
L I +R T DL R++ G ITGR D +I+ G NV+ +
Sbjct: 288 ALPVIRYR-------------TRDLTRLLPGTARTMRRIDRITGRSDDXLIIRGVNVFPS 334
Query: 927 DVEKTV 932
+E+ +
Sbjct: 335 QIEEIL 340
|
PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence. Length = 424 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-04
Identities = 48/216 (22%), Positives = 71/216 (32%), Gaps = 20/216 (9%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY E +A LL PG V+++ ++ M+A V PV P
Sbjct: 82 TYGEAKRAVDALAQALLDLGLD---PGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPA 138
Query: 564 DPLQRGGQALLK------------IENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHT 611
L A LK ++ + A+A L + G + +
Sbjct: 139 YSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAF 198
Query: 612 DSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM---R 668
+ A PD + FTSGSTG K V+ T + N+ + R
Sbjct: 199 ADLA--ATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR 256
Query: 669 KRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGST 704
R V + W+P H MG + GG T
Sbjct: 257 PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGT 292
|
Length = 624 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 40/131 (30%)
Query: 796 GYGLAENCVFVSC-AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
GYGL+E VS G +P G V + P V + I N
Sbjct: 267 GYGLSECASVVSLNTPGADRP-----------GSVGKPLPHVQVSIAN------------ 303
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIK 913
+GE+ + +GY G + + TGDLG + +G +I GR K
Sbjct: 304 DGEILVRGSLM-LGYLGEPPATD-------------DWWATGDLGHLDEEGYLYINGRKK 349
Query: 914 DLIIVA-GRNV 923
+LII + GRNV
Sbjct: 350 NLIITSFGRNV 360
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ +T + I+G G SGL+ AYAL + G + + EK VGG
Sbjct: 3 VGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46
|
Length = 443 |
| >gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-04
Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
+ I ++G G +G++TAYALA+ GY+ VT+ ++
Sbjct: 2 SHIAVIGAGITGVTTAYALAQRGYQ-VTVFDR 32
|
Length = 410 |
| >gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRII--------PGFYSSIGFIFGKVEVQ 1626
IG I +S +T+G V +G I P G + +
Sbjct: 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIG 62
Query: 1627 DNSVIGSQSLVLPNSVVSRDVILGALSV 1654
D+ IG+ ++LP + ++GA SV
Sbjct: 63 DDVWIGANVVILPGVTIGDGAVVGAGSV 90
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109 |
| >gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-04
Identities = 48/220 (21%), Positives = 80/220 (36%), Gaps = 37/220 (16%)
Query: 2082 FLIGLVIFTPLKW--------TLFLKENKILPLHW------LLPMFWVSSGILAALACAA 2127
+ V+ PL + T + + P +L ++ I + A
Sbjct: 238 LFVVFVLLPPLAFLFAIPVAITFDEIDWTLGPDMVGFILALVLTFVALAGFIAYTVLLLA 297
Query: 2128 AK-WVLVGKKKEGES-------VQIWSKGVLMDTVWQAFRTLVGEYFVEMTSGSFLFVAW 2179
A +L K G Q W+ LMD + L Y S W
Sbjct: 298 AVRLLLNLVLKPGRYYVHSGFYYQAWTVQQLMD---NSRVLLFPLY------ASSYIPHW 348
Query: 2180 MKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFGHIYEGDGGKVKFGKI 2239
+ +GA+I G+ A + S P++ ++ G + + LL G+ GG + G+
Sbjct: 349 YRALGAKI--GKVAEI-SSAQHEVPDLTDI-GEETFIA-DGLLMGN-ARLSGGWFRLGRT 402
Query: 2240 RIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKEEIVRS 2279
RIG F+G+ PG + + L LS+ K+ VR
Sbjct: 403 RIGRRSFLGNSGYYPPGAKTGDNVLLGVLSMTPKDGKVRE 442
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-04
Identities = 35/144 (24%), Positives = 48/144 (33%), Gaps = 54/144 (37%)
Query: 796 GYGLAENCVFVSCAY--------GQ----GKPI------ILDWQGRVCCGYVDQNDPDVD 837
GYG EN F S + G+PI ILD +G+
Sbjct: 272 GYGPTENTTF-STCHVITRLDEAADSIPIGRPIPNTTVYILDEEGQPV------------ 318
Query: 838 IRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGD 897
G GE+++ +GY R EL+ F G + RTGD
Sbjct: 319 -------------PIGVPGELYVGGDGLALGYLNRPELTAERFV-PDPFGPGERLYRTGD 364
Query: 898 LGR-----IIDGKFFITGRIKDLI 916
L R I+ F+ GRI +
Sbjct: 365 LARWRPDGNIE---FL-GRIDRQV 384
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-04
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK--STSKTVLVSWLPQYHDMG 690
PD + FTSGSTG K V+ TH L N +++ + + + VLV WLP H G
Sbjct: 208 PDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFG 266
|
Length = 614 |
| >gnl|CDD|215003 smart01060, Catalase, Catalases are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-04
Identities = 74/300 (24%), Positives = 114/300 (38%), Gaps = 90/300 (30%)
Query: 1726 GQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS----NSLSADDDARIDARGAAIRIFSDL 1780
G + ++I F GK PV VR S SAD R D RG A++ +++
Sbjct: 53 GYFEVTEDISDYTKAAFFQKVGKKTPVFVRFSTVAGERGSADT-VR-DPRGFAVKFYTE- 109
Query: 1781 NGNTSSLLDLTLKTGN---AFYAR-TIG--DFATWLVCGLAAREEH-VKRVP--HIRDA- 1830
GN DL GN F+ R I DF H KR P ++ D
Sbjct: 110 EGN----WDLV---GNNTPVFFIRDPIKFPDFI------------HAQKRDPRTNLPDHD 150
Query: 1831 -VWKSLRLS-----------------DSYAEMHYYSNICRLFRFT--DGQEMYVKFKLRP 1870
W L+ SY M+ + F+ +G+ YVKF +P
Sbjct: 151 MFWDFWSLNPESLHQVTWLMSDRGIPASYRHMNGFG--VHTFKLVNAEGERFYVKFHFKP 208
Query: 1871 YDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSG--VRYIF 1926
D G + + E + D D R L + A E G +
Sbjct: 209 -------DQG---IKNLTWEEAAKLAGKDPDYHRRDL-YEAIE--------RGDYPEWTL 249
Query: 1927 QLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
+Q+ +P+++A + D D TK W +YP I+VG++++++N E E+ F+P
Sbjct: 250 YVQV--MPEEDAEKFRFDP-FDLTKVWPHKDYPLIEVGKMTLNRNPDNYFAEVEQAAFSP 306
|
Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases that are closely related to plant peroxidases, and non-haem, manganese-containing catalases that are found in bacteria. Length = 373 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-04
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 892 YTRTGD-LGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIG 948
Y +GD R DG +++TGR+ D+I V+G + +A+VE + S P C AV+G
Sbjct: 514 YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVS-----HPQCAEAAVVG 568
Query: 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLI 1008
+ EV KG G+ + +G P +++ +++ V + G A K+
Sbjct: 569 IEHEV---KG---------QGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIH 616
Query: 1009 KPRTMSKTTSGKIKR 1023
+ KT SGKI R
Sbjct: 617 WAPGLPKTRSGKIMR 631
|
Length = 666 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-04
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 855 EGEVWISSPSAGIGYW----GREELSQITFRNELQNNRGRKYT-----RTGDLGRII-DG 904
EGE+ + Y+ + TFR E + ++T RTGD+G + DG
Sbjct: 385 EGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDG 444
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
I R +D+I G +YSA +E + ++ E + CAVIG P++
Sbjct: 445 FLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVE---CAVIGYPDD 489
|
Length = 576 |
| >gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-04
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63
R+ I G G +GL+ AY LA GY VTL E +GG S
Sbjct: 1 MRVAIAGAGLAGLAAAYELADAGYD-VTLYEARDRLGGKVAS 41
|
Length = 485 |
| >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIG-----FIFGKVEVQDN 1628
IG I +P + + V +GD I PG + IG + DN
Sbjct: 1 VFIGEGVKI---HPKA-----VIRGPVVIGDNVNIGPG--AVIGAATGPNEKNPTIIGDN 50
Query: 1629 SVIGSQSLVLPNSVVSRDVILGALSV 1654
IG+ +++ + + ++GA +V
Sbjct: 51 VEIGANAVIHGGVKIGDNAVIGAGAV 76
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-04
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 30/134 (22%)
Query: 820 WQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQIT 879
G G Q P I I +T G + I + S +GY+ + SQ
Sbjct: 279 LAGNNSSG---QVLPHAQITIPANQT----------GNITIQAQSLALGYYPQILDSQGI 325
Query: 880 FRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938
F T DLG + G I GR II G NVY A+VE +T
Sbjct: 326 FE-------------TDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVE-AAILATGL 371
Query: 939 IRPGCCAVIGVPEE 952
++ C V+G+P+
Sbjct: 372 VQDVC--VLGLPDP 383
|
Length = 452 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-04
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
T+ E+DA +A L ++ GDR+L+ ++ F R + VP
Sbjct: 34 TWREIDARVDALAAALAARG---VRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFR 90
Query: 561 -LPPDPLQRGGQALLKIENISKSCGAVAILSTIGY--HS-AVRVGSWPNLPWLHT--DSW 614
P + + ++++ GA A++ + H+ AVR S P+L + +
Sbjct: 91 QTPDE-----------VAYLAEASGARAMICHADFPEHAAAVRAAS-PDLTHVVAIGGAR 138
Query: 615 VKNS-KNLLAENV---VCFTESQPDDLCFLQFTSGSTGDAKGVMITHG 658
+ L+A ++ V DD C+ FTSG+TG K ++THG
Sbjct: 139 AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHG 186
|
Length = 528 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITH---GGLIHNVKLMRKRY--KSTSKTVLVSWLPQYH 687
+P D+C + +TSG++GD KGV++TH + V L +++ K T V +S+LP H
Sbjct: 218 KPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277
|
Length = 660 |
| >gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
IVG GPSGL+ AY LAK G + V + E+ + GG
Sbjct: 35 IVGAGPSGLTAAYYLAKAGLK-VAIFERKLSFGG 67
|
Length = 262 |
| >gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 26 IVGGGPSGLSTAYALAKLGYR---NVTLLEKYHTVGGM 60
I+G GP GLS L + ++T+ + G
Sbjct: 2 IIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGG 39
|
Length = 153 |
| >gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 9e-04
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 1331 ITDPSLVLIGDGAVISEGALIQSH--------EVKNGVLSFQPIKIARKVSVGPYAVIQK 1382
I+ + IGD +I I H ++ PI I V +G VI
Sbjct: 16 ISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILP 75
Query: 1383 GSVIGEEAEVA 1393
G IG+ A V
Sbjct: 76 GVTIGDGAVVG 86
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-04
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 13 KLHPCLPV-----NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ +P ++ ++G GP+GLS A LAK GY +VT+ E H +GG
Sbjct: 418 SGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEALHEIGG 468
|
Length = 752 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 84/345 (24%), Positives = 132/345 (38%), Gaps = 94/345 (27%)
Query: 481 HRITQK-KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP 539
H + K W +E V + TY EL R A+ L + +K GDRV +Y+P
Sbjct: 66 HLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVL---KSLGVKKGDRVA-IYMP 121
Query: 540 GL-DFVDAFFGCMR-------------------------AKVLPVPVLPPDPLQRGGQAL 573
+ + A C R AK+ V+ D RGG+ +
Sbjct: 122 MIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKL----VITADEGLRGGKVI 177
Query: 574 -LKIENISKSCGAVAILSTIGYHSAV--RVGSWPNLPWLHT-DSW----VKNSKNLLAEN 625
LK + + A+ H V R G+ +PW+ D W + +
Sbjct: 178 PLK-AIVDE---ALEKCPVSVEHVLVVRRTGN--PVPWVEGRDVWWHDLMAK------AS 225
Query: 626 VVCFTES-QPDDLCFLQFTSGSTGDAKGVMITHGG-LIHNVKLMRKRYKSTSKTVLVSWL 683
C E +D F+ +TSGSTG KGV+ T GG L++ M+ ++
Sbjct: 226 AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMK-------------YV 272
Query: 684 PQYHDMGLIGGLF--TAMVG---GSTAILFSPL-----TFI-------KNPLLWLETMSK 726
D G +F TA VG G + I++ PL T + +P + E + K
Sbjct: 273 FDIKD----GDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEK 328
Query: 727 YRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPV 771
++ T A ++R + V+ DLSS++ L EP+
Sbjct: 329 HKVTIFYTAPTAIRALMR---LGDEWVKKHDLSSLRLLGSVGEPI 370
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|163712 cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 0.001
Identities = 75/278 (26%), Positives = 107/278 (38%), Gaps = 76/278 (27%)
Query: 1741 KIFHP-GKCYPVIVRHSN----SLSADDDARIDARGAAIRIFSDLNGNTSSLLDLTLKTG 1795
KIF GK PV VR S SAD R D RG A++ +++ GN DL G
Sbjct: 31 KIFSEVGKKTPVFVRFSTVAGERGSADT-ER-DPRGFALKFYTE-EGN----WDLV---G 80
Query: 1796 N---AFYAR---TIGDFATWLVCGLAAREEH-VKRVP--HIRD--AVWK--SLR------ 1836
N F+ R DF H KR P +++D W SL
Sbjct: 81 NNTPVFFIRDPIKFPDFI------------HTQKRNPQTNLKDPDMFWDFWSLSPESLHQ 128
Query: 1837 ---------LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGI 1887
+ D Y M+ Y + G+ +VKF + D+ I + E
Sbjct: 129 VTILFSDRGIPDGYRHMNGYGSHTFSLVNAKGERFWVKFHFKT-DQGIKNLTNE------ 181
Query: 1888 LPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALD 1945
E + +D D R LF A E R PS + +Q+ P E + D
Sbjct: 182 ---EAAELAGEDPDYAQR-DLFEAIE---RGDFPS---WTLYVQVMPEEDAEKYRFNPFD 231
Query: 1946 CTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
TK W +YP I+VG++ +++N E E+ F+P
Sbjct: 232 LTKVWPHKDYPLIEVGKLELNRNPENYFAEVEQAAFSP 269
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes. Length = 429 |
| >gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 0.001
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ V+ + ++GGG +G++ A LA +G+ V L+EK ++GG
Sbjct: 120 KVEVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIGG 161
|
Length = 622 |
| >gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 0.001
Identities = 45/190 (23%), Positives = 67/190 (35%), Gaps = 56/190 (29%)
Query: 759 SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE--NCVFVSCAYGQGKPI 816
S+K + AEP + K + FG YGL E C G I
Sbjct: 210 LSLKKGIFGAEPWSEEMRKV---IENRFGC---KAFDIYGLTEGFGPGAGECTERNGLHI 263
Query: 817 ILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELS 876
+ IV+PET E++ + G+ GE+ I+
Sbjct: 264 ---------------WEDHFIFEIVDPETGEQLPD-GERGELVIT--------------- 292
Query: 877 QITFRNELQNN-RGRKYTRTGDLGRIID-----GKFF-----ITGRIKDLIIVAGRNVYS 925
T E R Y RTGD+ I+ G+ I GR D++IV G NV+
Sbjct: 293 --TLTKEGMPLIR---Y-RTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFP 346
Query: 926 ADVEKTVESS 935
+ +E+ +
Sbjct: 347 SQIERVLLQI 356
|
Length = 438 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 19/77 (24%)
Query: 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGS 1633
AKIG +I V +GAGV +G+ I PG + D+ VIG
Sbjct: 104 AKIGDGVTIGP--------NVVIGAGVEIGENVIIGPGVV-----------IGDDVVIGD 144
Query: 1634 QSLVLPNSVVSRDVILG 1650
S + PN V+ V LG
Sbjct: 145 GSRIHPNVVIYERVQLG 161
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGL 691
PDD L +TSG+TG KG I+ + + + +P YH
Sbjct: 84 VDPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYHGTAA 143
Query: 692 IGGLFTAMVGGSTAIL---FSPLTFIK 715
GL + G T L FS F K
Sbjct: 144 FLGLCYCLGSGGTLCLSRKFSASQFWK 170
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.001
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 19/78 (24%)
Query: 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGS 1633
AKIG SI +G GV +GD I PG IG D VIG
Sbjct: 2 AKIGENVSIGP--------NAVIGEGVVIGDGVVIGPGVV--IG---------DGVVIGD 42
Query: 1634 QSLVLPNSVVSRDVILGA 1651
++ PN + I+G
Sbjct: 43 DCVIHPNVTIYEGCIIGD 60
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 0.001
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTV-----LVSWLPQYH 687
Q D+C + +TSG+TG+ KGV++T+ +I V K T + S+LP H
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277
|
Length = 660 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC----------ESVEIEEAGAE 72
++ I+G GP+GL+ AY L + G+ VT+ + GGM ESV I+ A
Sbjct: 195 KVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANEQAGGMMRYGIPRFRLPESV-IDADIAP 252
Query: 73 LEEM 76
L M
Sbjct: 253 LRAM 256
|
Length = 652 |
| >gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 29/116 (25%)
Query: 1575 KIGRYCSI------RA-INPVSCPQQVTLGAGVHLGDFS--RIIPGFYSSIGFIFGKV-- 1623
+G S+ R +NP+ +G ++ D S + PG+ + IG V
Sbjct: 19 TLGEGSSVWFGAVLRGDVNPI------RIGERTNIQDGSVLHVDPGYPTIIG---DNVTV 69
Query: 1624 ---------EVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGS 1670
+ DN +IG +++L +V+ + I+ A S+ P V+ G + GS
Sbjct: 70 GHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGS 125
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153 |
| >gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
I IVG G +GL+ AYAL + G VT+ EK VGG
Sbjct: 4 IAIVGAGIAGLAAAYALREAGR-EVTVFEKGRGVGG 38
|
Length = 331 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
++ ++G GP+GL+ A L++ G+ +VT+ E+ GG+
Sbjct: 125 KVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALDGGL 161
|
Length = 457 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
++ ++G GP+GL+ A LAK+GY +VT+ E H GG
Sbjct: 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALHEPGG 177
|
Length = 464 |
| >gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
I +VG GPSGL AY LA G+ VT+ E +H +GG+
Sbjct: 309 IAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGV 344
|
Length = 944 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.002
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++G GP+G A A+LG V L+EK +GG C
Sbjct: 9 VIGAGPAGYVAAIRAAQLGL-KVALVEKGERLGGTC 43
|
Length = 454 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 0.002
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 25/126 (19%)
Query: 903 DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVS 962
DG ++ITGR+ D++ V+G + +A++E + + H + AV+G P+++ KG +
Sbjct: 496 DGYYWITGRVDDVLNVSGHRLGTAEIESALVA---HPKVAEAAVVGRPDDI---KGQGI- 548
Query: 963 DGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIK-----PRTMSKTT 1017
V + + G+ ++ + ++ V +E G +A +I+ P KT
Sbjct: 549 -----YAFVTL---KGGEEPSDELRKELRNWVRKEIG-PIAKPDVIQFAPGLP----KTR 595
Query: 1018 SGKIKR 1023
SGKI R
Sbjct: 596 SGKIMR 601
|
Length = 637 |
| >gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 60/276 (21%), Positives = 114/276 (41%), Gaps = 66/276 (23%)
Query: 760 SMKFLMVAAEPVRQTTVK----RF-VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGK 814
S++ + AEP K R ++ T +GLS+ V+ PG V + C Q
Sbjct: 196 SLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSE-VIGPG-------VAMECVETQDG 247
Query: 815 PIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREE 874
I + D P+ I++P T E + + G+EGE+ ++ + +E
Sbjct: 248 LHIWE----------DHFYPE----IIDPHTGEVLPD-GEEGELVFTTLT-------KEA 285
Query: 875 LSQITFRNELQNNRGRKYTRTGDLGRIIDGKFF-------ITGRIKDLIIVAGRNVYSAD 927
L I +R T DL R++ G ITGR D++I+ G NV+
Sbjct: 286 LPVIRYR-------------TRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQ 332
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVI 987
+E+ + + + P ++ T+ + + + +V L + +
Sbjct: 333 LEEVI-LKMDELSP--------HYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLA 383
Query: 988 ENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
I+ + +E GV++ V L++P ++ + + GK +R
Sbjct: 384 GEIQHTIKQEVGVSM-DVHLVEPGSLPR-SEGKARR 417
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions [Energy metabolism, Other]. Length = 422 |
| >gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 1574 AKIGRYCSIRAINPVSCPQQVTLGAG------VHLGDFSRIIPGFYSSIGF--IFGKVEV 1625
IG C I + + +T+G V + S ++IG G V +
Sbjct: 68 LTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTI 127
Query: 1626 QDNSVIGSQSLVLPNSVVSRDVILGALSV 1654
++ IG+ +++LP + ++GA SV
Sbjct: 128 GEDVWIGAGAVILPGVTIGEGAVIGAGSV 156
|
Length = 190 |
| >gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESV 64
+ IVG G +GLS AY L K GY V +LE VGG +
Sbjct: 7 TADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDRVGGRSLTA 49
|
Length = 450 |
| >gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDK 237
K +GG SL + L++ L ++ +EV I + + G E + D
Sbjct: 204 KEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTI---VDVG-GEKITADG 259
Query: 238 IIISGAFPV 246
+I + P
Sbjct: 260 VISTAPLPE 268
|
Length = 444 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.003
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
++ +VG GP+GL+ A LA+ G++ VT+ E+ +GG
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHK-VTVFERADRIGG 180
|
Length = 471 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEE-MDSHKL 81
R+ +VGGG GL A ALAKLG + VT++E EE L+E ++ + +
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSK-VTVVE----RRDRLLRGFDEEIAKILQEKLEKNGI 55
Query: 82 ALIDGSTGEFQDIKVADDYVSVISLTLELQDK 113
++ +T ++ + + + L+ D
Sbjct: 56 EVLLNTT-----VEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|163713 cd08157, catalase_fungal, Fungal catalases similar to yeast catalases A and T | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.004
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 74/307 (24%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSN----SLSADDDA 1765
++ R H G G+ + D+I + + GK P +VR S SAD
Sbjct: 17 RIPERVVHAKGAGAYGEFEVTDDISDITSADMLQGVGKKTPCLVRFSTVGGEKGSADT-V 75
Query: 1766 RIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHV-KRV 1824
R D RG A++ +++ GN D F+ R F ++ H KR
Sbjct: 76 R-DPRGFAVKFYTE-EGN----WDWVFNNTPVFFIRDPIKFPHFI---------HSQKRD 120
Query: 1825 P--HIRDA--VWK----------------SLR-LSDSYAEMHYYSNICRLFRFT--DGQE 1861
P +++D+ W S R SY M+ YS +++ DG
Sbjct: 121 PQTNLKDSTMFWDYLSQNPESIHQVMILFSDRGTPASYRSMNGYSG--HTYKWVNPDGSF 178
Query: 1862 MYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSP 1919
YV+F L+ D G P+ + E + + D T+ L F A E R P
Sbjct: 179 KYVQFHLKS-------DQG---PKFLTGEEAARLAGSNPDYATKDL-FEAIE---RGDYP 224
Query: 1920 SGVRYIFQLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNLST--EES 1974
S + + ++ + ++A + +I D TK W ++P VG++++++N E
Sbjct: 225 S-----WTVYVQVMTPEQAEKLRFNI-FDLTKVWPHKDFPLRPVGKLTLNENPKNYFAEI 278
Query: 1975 EKLEFNP 1981
E+ F+P
Sbjct: 279 EQAAFSP 285
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though. Length = 451 |
| >gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.004
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
+VGGGP+G++ A A A+LG V L+E+ +GGM
Sbjct: 4 VVGGGPAGVAAAIAAARLG-AKVLLVERRGWLGGM 37
|
This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415 |
| >gnl|CDD|214834 smart00823, PKS_PP, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 1082 IVEFLKGLVSEQTGIPITK-VSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTA 1140
+++ ++ V+ G + + G+DS+ V +L G+ + A +F
Sbjct: 13 LLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLMAVELRNRLEAATGLRLPATLVFDH 72
Query: 1141 TCIADLASF 1149
A LA
Sbjct: 73 PTPAALAEH 81
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. Length = 86 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2280 | |||
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG0047 | 505 | consensus Catalase [Inorganic ion transport and me | 100.0 | |
| COG0753 | 496 | KatE Catalase [Inorganic ion transport and metabol | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| cd08156 | 429 | catalase_clade_3 Clade 3 of the heme-binding enzym | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| cd08155 | 443 | catalase_clade_2 Clade 2 of the heme-binding enzym | 100.0 | |
| cd08154 | 469 | catalase_clade_1 Clade 1 of the heme-binding enzym | 100.0 | |
| PLN02609 | 492 | catalase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| cd00328 | 433 | catalase Catalase heme-binding enzyme. Catalase is | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| cd08157 | 451 | catalase_fungal Fungal catalases similar to yeast | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PF00199 | 384 | Catalase: Catalase; InterPro: IPR011614 Catalases | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| cd08151 | 328 | AOS Allene oxide synthase. Allene oxide synthase c | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| cd08153 | 295 | srpA_like Catalase-like heme-binding proteins simi | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| cd08150 | 283 | catalase_like Catalase-like heme-binding proteins | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| cd08152 | 305 | y4iL_like Catalase-like heme-binding proteins simi | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.97 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.96 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.92 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 99.92 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 99.81 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.81 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.8 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 99.8 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.79 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 99.77 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 99.76 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 99.75 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 99.75 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.75 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.74 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.73 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 99.73 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 99.71 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.7 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 99.7 | |
| PLN02268 | 435 | probable polyamine oxidase | 99.69 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.69 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.69 | |
| PLN03000 | 881 | amine oxidase | 99.68 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 99.68 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 99.67 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.67 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 99.67 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.67 | |
| PLN02676 | 487 | polyamine oxidase | 99.66 | |
| PLN02568 | 539 | polyamine oxidase | 99.65 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.64 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.63 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.6 | |
| PLN02976 | 1713 | amine oxidase | 99.59 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 99.57 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.57 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.55 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.53 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.53 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.5 | |
| PLN02472 | 246 | uncharacterized protein | 99.49 | |
| PLN02296 | 269 | carbonate dehydratase | 99.48 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.48 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.46 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.45 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.44 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.44 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 99.43 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.42 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.42 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 99.42 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 99.41 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.41 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.39 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.39 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 99.39 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 99.38 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 99.38 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 99.37 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 99.36 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 99.36 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.35 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.35 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.34 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 99.33 | |
| PLN02739 | 355 | serine acetyltransferase | 99.33 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 99.33 | |
| PLN02612 | 567 | phytoene desaturase | 99.32 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.31 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.31 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 99.3 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.3 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 99.3 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 99.29 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 99.28 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.28 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.28 | |
| PLN02694 | 294 | serine O-acetyltransferase | 99.28 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.27 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.27 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 99.26 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.25 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.25 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 99.24 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.23 | |
| PLN02487 | 569 | zeta-carotene desaturase | 99.2 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.19 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 99.19 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.17 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.17 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.16 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.16 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.15 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 99.15 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 99.15 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 99.13 | |
| TIGR03467 | 419 | HpnE squalene-associated FAD-dependent desaturase. | 99.12 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 99.11 | |
| PLN02357 | 360 | serine acetyltransferase | 99.11 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 99.1 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 99.07 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 99.07 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.06 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.05 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.05 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.04 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.04 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 99.01 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.0 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 98.99 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.98 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.96 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.96 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.95 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.94 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.92 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.9 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.89 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.88 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.87 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.85 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.85 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.84 | |
| PLN02296 | 269 | carbonate dehydratase | 98.83 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.82 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.82 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.82 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.82 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.81 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.8 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.8 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.8 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 98.8 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 98.76 | |
| PLN02739 | 355 | serine acetyltransferase | 98.75 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.75 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.74 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.74 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.74 | |
| PLN02357 | 360 | serine acetyltransferase | 98.73 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 98.72 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.72 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.71 | |
| PLN02472 | 246 | uncharacterized protein | 98.71 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.7 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.7 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.7 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.69 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.69 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.69 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.68 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.68 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.67 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.66 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.65 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.63 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.61 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.59 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.57 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.55 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 98.55 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.53 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.53 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.49 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.47 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 98.46 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.46 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.46 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.46 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.45 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.45 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.45 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.41 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.39 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.36 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.34 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 98.34 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 98.34 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.33 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.33 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.33 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.29 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.28 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.28 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.27 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.26 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.25 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.24 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.24 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.23 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.22 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.21 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.21 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.21 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.2 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.19 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.19 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.18 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.18 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.17 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.17 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.17 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.16 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.16 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.15 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 98.14 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 98.13 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.13 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.12 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.1 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.09 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.08 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.07 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.07 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.07 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.07 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.06 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.05 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.05 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.05 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.04 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.04 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.03 | |
| PRK05883 | 91 | acyl carrier protein; Validated | 98.03 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.03 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.02 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.02 | |
| CHL00124 | 82 | acpP acyl carrier protein; Validated | 98.02 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.01 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.01 | |
| PRK00982 | 78 | acpP acyl carrier protein; Provisional | 98.01 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.0 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.0 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.0 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.0 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.0 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 97.99 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.96 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.96 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.94 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 97.94 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.93 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.93 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.92 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.91 | |
| PRK05350 | 82 | acyl carrier protein; Provisional | 97.91 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.91 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.91 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.9 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.9 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.9 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.9 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.89 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.89 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.89 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 97.88 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.88 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.87 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 97.86 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 97.86 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.86 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.85 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.85 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 97.85 | |
| PRK09184 | 89 | acyl carrier protein; Provisional | 97.84 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.83 | |
| TIGR00517 | 77 | acyl_carrier acyl carrier protein. S (Ser) at posi | 97.83 | |
| PRK12449 | 80 | acyl carrier protein; Provisional | 97.81 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.79 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.78 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.77 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.77 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.77 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 97.77 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.76 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.76 | |
| COG3433 | 74 | Aryl carrier domain [Secondary metabolites biosynt | 97.76 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.76 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 97.75 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.75 | |
| smart00823 | 86 | PKS_PP Phosphopantetheine attachment site. Phospho | 97.75 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.73 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.73 | |
| PRK07081 | 83 | acyl carrier protein; Provisional | 97.7 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.69 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.67 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.67 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.65 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.64 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.64 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.63 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 97.63 | |
| PRK07117 | 79 | acyl carrier protein; Validated | 97.62 | |
| PRK05828 | 84 | acyl carrier protein; Validated | 97.62 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.61 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.6 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.59 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 97.58 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.58 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.58 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.57 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 97.57 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.57 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.54 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 97.54 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.53 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.51 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.51 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 97.5 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.49 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.49 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 97.48 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.48 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.47 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.46 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.46 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.46 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.45 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 97.45 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.44 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.44 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.43 | |
| PLN02815 | 594 | L-aspartate oxidase | 97.43 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.43 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.42 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 97.42 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.42 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.41 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 97.41 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 97.41 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.41 | |
| PLN02985 | 514 | squalene monooxygenase | 97.41 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.4 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.4 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.39 | |
| PRK05087 | 78 | D-alanine--poly(phosphoribitol) ligase subunit 2; | 97.38 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 97.38 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 97.37 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.35 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 97.35 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 97.35 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 97.35 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 97.34 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.34 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.33 | |
| PRK07639 | 86 | acyl carrier protein; Provisional | 97.33 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 97.33 | |
| PRK08172 | 82 | putative acyl carrier protein IacP; Validated | 97.32 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.32 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.31 | |
| COG0236 | 80 | AcpP Acyl carrier protein [Lipid metabolism / Seco | 97.3 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.3 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 97.28 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.28 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 97.27 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.27 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.26 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.26 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 97.26 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 97.26 |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-79 Score=811.24 Aligned_cols=613 Identities=19% Similarity=0.311 Sum_probs=461.1
Q ss_pred HHHHHHHHHhccccCCcccCCC-ccccchhhHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHcCCEECCCcEECccc
Q 037878 1252 ATCISITIFGNSFLRPNYTLNP-EVSIWSADFVKWWALYKVHEVSCKVLAVYLRGTVFLNWWFEMLGAKLGSSVLLDTVD 1330 (2280)
Q Consensus 1252 ~~~~~~~~~~~~~l~~~~~~~p-~yp~~~~~~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~R~lGa~Ig~~v~i~~~~ 1330 (2280)
...+++++++||+++++ +|| +||+||++|+|||+++|+.++.. ...+.|++|+++|+|++|||||+||.|++..
T Consensus 51 ~~~~~~~i~~k~ll~g~--~~pg~yp~~g~~~~r~W~~~~l~~~~~---~~~~~g~~~~~~ylr~lGa~IG~~v~I~~~~ 125 (695)
T TIGR02353 51 VGRLGFAIAAKWLLVGR--WKPGTYPIWGSTYLRFWTVKRLVDAAP---TVLLSGSPLYSLYLRALGAKIGKGVDIGSLP 125 (695)
T ss_pred HHHHHHHHHHHHHhcCC--ccCCccCCCCceEEhhhHHHHHHHhCC---cccccCChHHHHHHHHcCCEECCCCEEEeee
Confidence 33567788999999999 899 99999999999999888877765 4558899999999999999999999999877
Q ss_pred cCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc------CCCCcc
Q 037878 1331 ITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS------EGGKPI 1404 (2280)
Q Consensus 1331 ~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v------~~~~~~ 1404 (2280)
+.++++++|||||.|+++|.|.+|+++++.+++++|+||+||+||++|+|.+|++|||||+||++|.| ++++.|
T Consensus 126 ~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~~v~~~~~~ 205 (695)
T TIGR02353 126 PVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSIPDGERW 205 (695)
T ss_pred cccCCceEECCCCEECCCCEEEcccCCCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCcccCCCCEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999986 556677
Q ss_pred ccCCCceeeccCCCccccccccchhHHHHHhhhhhhH-----HHHHHHHHHHHHHHHHHhccCCCCchhhHHHHhhcccc
Q 037878 1405 LKSTNANYVQKGGAVSKISTHRTQDEAIHQFIGIYIV-----SFLSTLSAAITYFLYIWLSQKPASPRHFAFLCISGAFH 1479 (2280)
Q Consensus 1405 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1479 (2280)
.|+|++...+ ...++++.++.++ .+|...|.. ..+++++.++++..+....
T Consensus 206 -~G~PA~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~------------------- 261 (695)
T TIGR02353 206 -HGSPAQKTGA--DYRKVQPARPYTV--RRRLYVAGALFVVFVLLPPLAFLFAIPVAITFD------------------- 261 (695)
T ss_pred -EeeCCEEecc--ccCCCCccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 8999998743 2333333232221 233333332 2223333333333221100
Q ss_pred chhHHHhhhhhhccccCCchhHH-HHHHHHHHH-HHHHHHHHHHHHHHHHhccc--c----ccccchhhHHHHHHHHHhh
Q 037878 1480 WLPFTIIAYATMFASVPANPAYF-AISTAVAYL-FHGLVLSYLTCILTHFLAGK--K----EEKQTHLKAWLCHRITIAC 1551 (2280)
Q Consensus 1480 ~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~----~~~~~~~~~w~~~~~~~~~ 1551 (2280)
...|+..+....++ +.......+ ...++..++++++||++.+| | ..+.++||.|+.+|++..+
T Consensus 262 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krll~~~~kpG~yp~~~~~~~r~W~~~~l~~~~ 332 (695)
T TIGR02353 262 ---------EIDWTLGPDMVGFILALVLTFVALAGFIAYTVLLLAAVRLLLNLVLKPGRYYVHSGFYYQAWTVQQLMDNS 332 (695)
T ss_pred ---------HhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhHHHHHHHHHHHHHHHH
Confidence 00111111111111 111111111 11122233367788988873 4 3466789999999998877
Q ss_pred hhhhhhhccCCchHHHHHHHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEE
Q 037878 1552 HLRFAKLLSGTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVI 1631 (2280)
Q Consensus 1552 ~~~~~~~l~gt~~~~~~lR~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~i 1631 (2280)
......+.+++++++|||+|||||||+++|++.. ...|+|++||||++|+|+++++++.+.++.+++++++||+||||
T Consensus 333 -~~~~~~l~~s~~~~~ylRlLGAkIGk~v~i~t~~-~~~pdLltIG~g~~iad~v~~~~~~~~~g~l~~~~i~IG~~afV 410 (695)
T TIGR02353 333 -RVLLFPLYASSYIPHWYRALGAKIGKVAEISSAQ-HEVPDLTDIGEETFIADGLLMGNARLSGGWFRLGRTRIGRRSFL 410 (695)
T ss_pred -HHHHHHhcccHHHHHHHHHhCCeeCCCeEecccc-CCCCcceEECCCcEeccCcEEeeeEEeCCeEEEeeEEECCCcEE
Confidence 3455667889999999999999999999999853 45599999999999999999999999999999999999999999
Q ss_pred ccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeecccchhhHHHHHhHHHHHHHHHhhhhhhhhhhhe
Q 037878 1632 GSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSANLAATTLK 1711 (2280)
Q Consensus 1632 G~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~~~~~~~ 1711 (2280)
||+++++||++||||++||++|.+|+|.++++|++|.||||.+ +++... .++
T Consensus 411 Gn~~vv~pG~~ig~~~llg~~S~~p~~~~~~~g~~w~GSPa~~-l~~~~~-~~~-------------------------- 462 (695)
T TIGR02353 411 GNSGYYPPGAKTGDNVLLGVLSMTPKDGKVREGVGWLGSPPFE-LPRRVN-RDD-------------------------- 462 (695)
T ss_pred cCceeECCCCEeCCCCEEeecccCCCCccCCCCCEEeCCCCee-CCcccc-ccc--------------------------
Confidence 9999999999999999999999999988899999999999433 221100 000
Q ss_pred ecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCCcccccccccEEEeeccCCCCCCcceeee
Q 037878 1712 VKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSSLLDLT 1791 (2280)
Q Consensus 1712 ~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~D~~~~~rG~Aik~~~~~~~~~~~~~D~~ 1791 (2280)
.+
T Consensus 463 ----------------------------------------------------------------------~~-------- 464 (695)
T TIGR02353 463 ----------------------------------------------------------------------EL-------- 464 (695)
T ss_pred ----------------------------------------------------------------------cc--------
Confidence 00
Q ss_pred cccccccccCChhhHHHHHhhccchhhhhhccCcchhhhhhhcccCCCccccceeeeeeeEEEEEeCCcEEEEEEEeecC
Q 037878 1792 LKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPY 1871 (2280)
Q Consensus 1792 ~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~y~s~~~~~~~~~~g~~~~vk~~~~P~ 1871 (2280)
T Consensus 465 -------------------------------------------------------------------------------- 464 (695)
T TIGR02353 465 -------------------------------------------------------------------------------- 464 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCCCccccccccccCCCCCC
Q 037878 1872 DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWD 1951 (2280)
Q Consensus 1872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~d~~~~~~~~~D~t~~W~ 1951 (2280)
+ .|+
T Consensus 465 -------------------------------------------------------------------------~---~~~ 468 (695)
T TIGR02353 465 -------------------------------------------------------------------------E---ALT 468 (695)
T ss_pred -------------------------------------------------------------------------c---ccc
Confidence 0 000
Q ss_pred CCCCCceeeEEEEecCCCChhhhccccccCCcCCCccccccCCCcccccccccchhhHHHhhhHhhcCCCCchhHHHhhh
Q 037878 1952 EAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEPLPESWRIFLE 2031 (2280)
Q Consensus 1952 ~~~~p~~~vg~l~i~~~~~~~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~s~~~R~~~~~~~~~~~~~~ 2031 (2280)
|+ |+. + +|.
T Consensus 469 ---------------------------~~---------p~~-----------~-----------~~~------------- 477 (695)
T TIGR02353 469 ---------------------------FE---------PDP-----------R-----------RRL------------- 477 (695)
T ss_pred ---------------------------CC---------CCH-----------H-----------HHH-------------
Confidence 00 000 0 000
Q ss_pred cccccccCCCCCccccccccccCcccchhhHHHHHHHHhhhhhhhhhHHH-HHHHHHhhcchhHHHHHhhhcccch-hhH
Q 037878 2032 QSDVKVDLSGCPMAAALEEKTEDKVTLERTWYQTLWSIFAQPLLQTVLPY-FLIGLVIFTPLKWTLFLKENKILPL-HWL 2109 (2280)
Q Consensus 2032 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2109 (2280)
.|+......+..|.+-+..+. +++.+. .+.+ +.....+.. ...
T Consensus 478 -----------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~ 522 (695)
T TIGR02353 478 -----------------------------ARKNVENLRIILPFLLVQWAMLFALVVL---DLQA---LDDYTEWGAVALL 522 (695)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HhhhhHHHHHHHH
Confidence 000000000111111111121 111011 1111 111111111 112
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCCcceeeeeccccchhHHHH-HHHHHHHHHhhhcCCcchHHHHHHHhcCeee
Q 037878 2110 LPMFWVSSGILAALACAAAKWVLVGKKKEGESVQIWSKGVLMDTVWQA-FRTLVGEYFVEMTSGSFLFVAWMKLMGAEIE 2188 (2280)
Q Consensus 2110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~g~~ig 2188 (2280)
++.+.++.+++++++.+++||+++||+|+|+| |+||+|+||+++.+. .+.++.+++++.+.||++++.++|++|+|||
T Consensus 523 ~~~~~~~~~~~~~~~~v~~kwll~gr~~pg~~-plws~~~wr~~~~~~~~~~~~~~~~l~~l~Gt~~~~~~lr~lGa~IG 601 (695)
T TIGR02353 523 AALILMAVGVGAFLILVERKWLVFGRLKPQEH-PLWSPFVWLHELHWKLYESVAVPNFLRPFRGTPFLPAILRLLGVKIG 601 (695)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeCCCCCccc-cccccceeehhHHHHHHHHHHhhhhhhccCCcHHHHHHHHHCCCEEC
Confidence 24567778888899999999999999999998 999999999999888 8999999999999999999999999999999
Q ss_pred ccCcEEEccceeeecCceeEEecCceEECCCceEeeecccCCCcceEeeeEEEccCeEEccceeEcCCcEeCCCceeccc
Q 037878 2189 LGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFGHIYEGDGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENGGSLSSL 2268 (2280)
Q Consensus 2189 ~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 2268 (2280)
++|+|+++ ++.|+|+|+|| |+|+|+++|++|+|.++ |+.|+.++++||+||+||++|+|+||++|||+++|+++
T Consensus 602 --~~v~i~~~-~~~~~dlv~IG-d~~~I~~~~~i~~h~~~--~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~ 675 (695)
T TIGR02353 602 --RGVYIDGT-DLTERDLVTIG-DDSTLNEGSVIQTHLFE--DRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPD 675 (695)
T ss_pred --CCeEECCe-eccCCCCeEEC-CCCEECCCCEEEecccc--ccccccCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 99999998 89999999999 99999999999999999 99999999999999999999999999999999999999
Q ss_pred ceeeccccccc
Q 037878 2269 SLAMKEEIVRS 2279 (2280)
Q Consensus 2269 s~~~~~~~~~~ 2279 (2280)
|+|||||.|+.
T Consensus 676 SvV~~g~~vp~ 686 (695)
T TIGR02353 676 SLVMKGEEVPA 686 (695)
T ss_pred CEEcCCcccCC
Confidence 99999999864
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=859.91 Aligned_cols=607 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeC
Q 037878 459 ELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYV 538 (2280)
Q Consensus 459 ~~~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~ 538 (2280)
+.+..+++...++++++++.+.+. |+++|+.+.+ .++||+||+++++++|+.|++. |+++|++|+|+++
T Consensus 3710 ~~~~~~~~~~~~~~~~~~~~~~~~--p~~~Av~~~~------~~~tY~eL~~~~~~la~~L~~~---gv~~~~~V~v~~~ 3778 (4334)
T PRK05691 3710 NRSERDYPLEQSYVRLFEAQVAAH--PQRIAASCLD------QQWSYAELNRAANRLGHALRAA---GVGVDQPVALLAE 3778 (4334)
T ss_pred CCccCCCccccCHHHHHHHHHHhC--CCceEEEcCC------CcccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeC
Q ss_pred CCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccc-cc
Q 037878 539 PGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWV-KN 617 (2280)
Q Consensus 539 ~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 617 (2280)
+|+++++++|||+|+|++|||||+++|.+| +.++++++++.+++++........................ ..
T Consensus 3779 ~s~~~~v~~lavlkaG~a~vpld~~~p~~r-------~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3851 (4334)
T PRK05691 3779 RGLDLLGMIVGSFKAGAGYLPLDPGLPAQR-------LQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE 3851 (4334)
T ss_pred CCHHHHHHHHHHHhhCcEEeCCCCCChHHH-------HHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc
Q ss_pred ccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHH
Q 037878 618 SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFT 697 (2280)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~ 697 (2280)
..........+.....++++|||+|||||||+||||+++|+|+++.+.+....++++++++++++.|++|+.++ .+++.
T Consensus 3852 ~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~-~~~~~ 3930 (4334)
T PRK05691 3852 VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISV-WQFLA 3930 (4334)
T ss_pred cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHH-HHHHH
Q ss_pred HHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHH
Q 037878 698 AMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVK 777 (2280)
Q Consensus 698 ~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~ 777 (2280)
+|..|+++++++... ..+|..+.+.++++++|++..+|+++..++...... +++||.+++|||++++++++
T Consensus 3931 ~l~~G~~l~i~~~~~-~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~~--------~~~lr~~~~gGe~l~~~~~~ 4001 (4334)
T PRK05691 3931 APLFGARVEIVPNAI-AHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQA--------LDGLRWMLPTGEAMPPELAR 4001 (4334)
T ss_pred HHhCCCEEEEcCccc-cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcccc--------CCCceEEEecCCcCCHHHHH
Q ss_pred HHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeE
Q 037878 778 RFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857 (2280)
Q Consensus 778 ~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GE 857 (2280)
+|.+.. ++++++|.||+|||++.++......... .....++|+|++|++++|+|+++ .++|.|.+||
T Consensus 4002 ~~~~~~-----~~~~l~n~YG~TE~t~~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~v~d~~~--~~~p~g~~GE 4068 (4334)
T PRK05691 4002 QWLQRY-----PQIGLVNAYGPAECSDDVAFFRVDLAST------RGSYLPIGSPTDNNRLYLLDEAL--ELVPLGAVGE 4068 (4334)
T ss_pred HHHHhC-----CCCeEEeCccCccceeEEEEEEcccccc------cCCcCCCCCccCCCEEEEECCCC--CCCCCCCceE
Q ss_pred EEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhcc
Q 037878 858 VWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESST 936 (2280)
Q Consensus 858 L~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p 936 (2280)
|||+|++|++||+|+|++|+++|+++|+..+++|||||||+||++ ||.|+|+||+|+|||++|+||||+|||++|.++|
T Consensus 4069 L~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~ 4148 (4334)
T PRK05691 4069 LCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQA 4148 (4334)
T ss_pred EEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCC
Q ss_pred CCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCC
Q 037878 937 EHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKT 1016 (2280)
Q Consensus 937 ~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t 1016 (2280)
+|.+ |+|+...+. ....+++++....+.....+..+.++++|.+.++.++.|..++.+++||+|
T Consensus 4149 ~v~~---a~v~~~~~~-------------~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t 4212 (4334)
T PRK05691 4149 EVRE---AAVAVQEGV-------------NGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLN 4212 (4334)
T ss_pred CccE---EEEEEecCC-------------CCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCC
Q ss_pred CCcccchHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCC
Q 037878 1017 TSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGI 1096 (2280)
Q Consensus 1017 ~sGKvdR~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~ 1096 (2280)
+||||||++ |+.+....... .....+.+++|+.|+++|+++|++
T Consensus 4213 ~~GKidr~~------------L~~~~~~~~~~------------------------~~~~~p~~~~e~~l~~iw~~vL~~ 4256 (4334)
T PRK05691 4213 ANGKLDRKA------------LPALDIGQLQS------------------------QAYLAPRNELEQTLATIWADVLKV 4256 (4334)
T ss_pred CCCcccHhh------------cCCCccccccc------------------------cccCCCCCHHHHHHHHHHHHHhCC
Q ss_pred CCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhccCCC
Q 037878 1097 PITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQ 1160 (2280)
Q Consensus 1097 ~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~~~~~ 1160 (2280)
+ +|+.+||||++|||||+|||+++++++.+|+.+++.+||++||+++||+.++.........
T Consensus 4257 ~--~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~~~~~~~~ 4318 (4334)
T PRK05691 4257 E--RVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGLAGSAIDE 4318 (4334)
T ss_pred C--cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhhccccccc
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=851.15 Aligned_cols=587 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCC
Q 037878 461 PGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540 (2280)
Q Consensus 461 ~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s 540 (2280)
...+.+...++.++++.++++. |+++|+++.+ +++||+||+++++++|+.|+++ |+++||+|+|+++|+
T Consensus 3087 ~~~~~~~~~~~~~l~~~~a~~~--p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~---gv~~g~~V~l~~~~s 3155 (3956)
T PRK12467 3087 TAAAYPSERLVHQLIEAQVART--PEAPALVFGD------QQLSYAELNRRANRLAHRLIAI---GVGPDVLVGVAVERS 3155 (3956)
T ss_pred CCCCCCccccHHHHHHHHHHhC--CCcceEeeCC------cccCHHHHHHHHHHHHHHHHHc---CCCCCCeEEEEeCCC
Q ss_pred HhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccc
Q 037878 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620 (2280)
Q Consensus 541 ~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (2280)
+++++++|||+|+|++|||+|+.+|.+| +.++++++++++++++......+..........+......
T Consensus 3156 ~~~vv~~lavl~aGa~~vpld~~~p~~r-------l~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~----- 3223 (3956)
T PRK12467 3156 VEMIVALLAVLKAGGAYVPLDPEYPRER-------LAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLN----- 3223 (3956)
T ss_pred HHHHHHHHHHHhhCcEeecCCCCChHHH-------HHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhc-----
Q ss_pred cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 621 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
......+.....++|+|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|+.++ .+++.+|.
T Consensus 3224 -~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~ 3301 (3956)
T PRK12467 3224 -GYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQ-ERFLWTLI 3301 (3956)
T ss_pred -ccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHH-HHHHHHHh
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|+++++.+...+ +|..+++.++++++|++..+|++++.+.+...... +++||.+++|||+++++++++|.
T Consensus 3302 ~G~~l~i~~~~~~--~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~-------~~~lr~~~~gGe~~~~~~~~~~~ 3372 (3956)
T PRK12467 3302 CGGCLVVRDNDLW--DPEELWQAIHAHRISIACFPPAYLQQFAEDAGGAD-------CASLDIYVFGGEAVPPAAFEQVK 3372 (3956)
T ss_pred CCCEEEECCcccC--CHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccccC-------CCCceEEEEecCCCCHHHHHHHH
Q ss_pred HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEE
Q 037878 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860 (2280)
Q Consensus 781 ~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i 860 (2280)
+.+ +++.++|.||+|||++.++......... ......++|+|++|++++|+|+++ .++|+|++|||+|
T Consensus 3373 ~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~v~d~~~--~~vp~G~~GEL~i 3440 (3956)
T PRK12467 3373 RKL-----KPRGLTNGYGPTEAVVTVTLWKCGGDAV-----CEAPYAPIGRPVAGRSIYVLDGQL--NPVPVGVAGELYI 3440 (3956)
T ss_pred HhC-----CCCEEEeCcccchhEeeeEEEecccccc-----cCCCCCCCccccCCCEEEEECCCC--CCCCCCCCceEEE
Q ss_pred cCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCc
Q 037878 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939 (2280)
Q Consensus 861 ~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~ 939 (2280)
+|+++++||+|+|++|+++|+++++..+++|||||||+|+++ ||.|+|+||+|||||++|+||+|+|||++|.++|+|.
T Consensus 3441 ~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~ 3520 (3956)
T PRK12467 3441 GGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVR 3520 (3956)
T ss_pred cchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccc
Q ss_pred CCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCc
Q 037878 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSG 1019 (2280)
Q Consensus 940 ~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sG 1019 (2280)
+ |+|++..++ ....+++++....+.... .+.+++.+...++.++.|..++.+++||+|+||
T Consensus 3521 ~---a~v~~~~~~-------------~~~~lva~v~~~~~~~~~---~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~G 3581 (3956)
T PRK12467 3521 E---AVVLARDGA-------------GGKQLVAYVVPADPQGDW---RETLRDHLAASLPDYMVPAQLLVLAAMPLGPNG 3581 (3956)
T ss_pred e---EEEEEecCC-------------CCcEEEEEEeCCCCCccc---HHHHHHHHhccCChhhCCCeeeeeccCCCCCCC
Q ss_pred ccchHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCCCc
Q 037878 1020 KIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPIT 1099 (2280)
Q Consensus 1020 KvdR~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~~~ 1099 (2280)
||||++ ||.|..... .....+.+++|+.|+++|+++||++
T Consensus 3582 KidR~~------------L~~~~~~~~--------------------------~~~~~p~~~~e~~l~~i~~~vL~~~-- 3621 (3956)
T PRK12467 3582 KVDRKA------------LPDPDAKGS--------------------------REYVAPRSEVEQQLAAIWADVLGVE-- 3621 (3956)
T ss_pred ccchhh------------cCCCCcccc--------------------------ccccCCCCHHHHHHHHHHHHHhCCC--
Q ss_pred cccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1100 KVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1100 ~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
.|+.+||||+||||||.||+|++++++.+|+++++++||++||+++||+.+..
T Consensus 3622 ~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3622 QVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-69 Score=843.21 Aligned_cols=620 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++.+++. |+++|+.+.+ +++||+||+++++++|+.|+++ |+++|++|+++++|++++++++|
T Consensus 512 ~~~~~~~~~~a~~~--pd~~Al~~~~------~~lTY~eL~~~a~~lA~~L~~~---Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 512 DCVHQLIEAQARQH--PERPALVFGE------QVLSYAELNRQANRLAHVLIAA---GVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred CCHHHHHHHHHHHC--CCCeEEEeCC------ceEcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHHHHHH
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+|+|++|||+|+.+|.+| +.++++++++++++++.......... .....+..+............. +
T Consensus 581 ail~aG~~~vpld~~~p~~r-------l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~ 649 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDR-------LAYMLDDSGVRLLLTQSHLLAQLPVP--AGLRSLCLDEPADLLCGYSGHN--P 649 (3956)
T ss_pred HHHHhCcEEeccCCCChHHH-------HHHHHHhcCCCEEEechhhhhhcccc--cCccEEEeccccccccccCCCC--C
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++|+|||+|||||||+||||+++|+++.+.+.+....+++.+++++++++|++|+.++ .+++.+|..|+++++.
T Consensus 650 ~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lv~~ 728 (3956)
T PRK12467 650 EVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGV-TELFGALASGATLHLL 728 (3956)
T ss_pred CCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHH-HHHHHHHhCCCEEEEc
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
++.. ..+|..+.+.++++++|++.++|+++..+.+...... ..++|.+++|||+++++++++|.+.+
T Consensus 729 ~~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-------~~~lr~i~~gGe~l~~~~~~~~~~~~----- 795 (3956)
T PRK12467 729 PPDC-ARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL-------PRPQRALVCGGEALQVDLLARVRALG----- 795 (3956)
T ss_pred Cccc-cCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcccc-------CCcccEEEEEeecCCHHHHHHHHHhC-----
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++++++|.||+||+++.++......... .....++|+|++|++++|+|+++ .++|.|++|||+|+|+++++|
T Consensus 796 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~i~d~~~--~~vp~G~~GEL~i~G~~v~~G 867 (3956)
T PRK12467 796 PGARLINHYGPTETTVGVSTYELSDEER------DFGNVPIGQPLANLGLYILDHYL--NPVPVGVVGELYIGGAGLARG 867 (3956)
T ss_pred CCCEEEeCcCCChhhhheeeEecccccc------cCCCCcccCCcCCCEEEEECCCC--CCCCCCCceEEEecccccchh
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEE
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv 947 (2280)
|+|+|++|+++|..+++..++++||||||+|+++ ||.|+|+||+|||||++|+||+|+|||++|.++|+|.+ |+|+
T Consensus 868 Yl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~---a~v~ 944 (3956)
T PRK12467 868 YHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVRE---AVVL 944 (3956)
T ss_pred hcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcce---EEEE
Q ss_pred eccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 948 GVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
+.++ ........+++..............+.+++.+.+.++.++.|..++.+++||+|+||||||++|.
T Consensus 945 ~~~~-----------~~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~ 1013 (3956)
T PRK12467 945 AQPG-----------DAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALP 1013 (3956)
T ss_pred EEcC-----------CCCcEEEEEEEecccccccccccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcC
Q ss_pred HHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCCCccccCCCCh
Q 037878 1028 KQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSL 1107 (2280)
Q Consensus 1028 ~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~F 1107 (2280)
+...+........| .+++|+.|+++|+++||++ .|+.+|||
T Consensus 1014 ~~~~~~~~~~~~~p-------------------------------------~~~~e~~l~~i~~~vL~~~--~i~~~d~F 1054 (3956)
T PRK12467 1014 KPDASAVQATFVAP-------------------------------------QTELEKRLAAIWADVLKVE--RVGLTDNF 1054 (3956)
T ss_pred CcccccccccccCC-------------------------------------CCHHHHHHHHHHHHHhCCC--CCCCCCCc
Q ss_pred hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCcchhhhhhhhhh
Q 037878 1108 VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQLMTDSSFTPEPETDFDEFDMEVSKARQ 1187 (2280)
Q Consensus 1108 f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q 1187 (2280)
|++|||||.||++++++++.+|+.+++++||++||+++||+.+........+ +..........|++..|
T Consensus 1055 f~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~~~~~~~-----------~~~~~~~~~~~PlS~~Q 1123 (3956)
T PRK12467 1055 FELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQQQGAQP-----------ALPDVDRDQPLPLSYAQ 1123 (3956)
T ss_pred hhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhhcccccc-----------cccccccccccccchHH
Q ss_pred hHHHHHHHH
Q 037878 1188 CGIWIFQLL 1196 (2280)
Q Consensus 1188 ~~~~~~~~l 1196 (2280)
.++|+++++
T Consensus 1124 ~~lw~~~~~ 1132 (3956)
T PRK12467 1124 ERQWFLWQL 1132 (3956)
T ss_pred HHHHHHHhh
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=852.73 Aligned_cols=623 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCC
Q 037878 461 PGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540 (2280)
Q Consensus 461 ~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s 540 (2280)
+..+++...++++++++++++. |+++|+.+.+ +++||+||+++++++|+.|+++ |+++|++|+++++||
T Consensus 1995 ~~~~~~~~~~~~~~~~~~a~~~--p~~~A~~~~~------~~lTy~eL~~~a~~lA~~L~~~---gv~~g~~V~l~~~~s 2063 (5163)
T PRK12316 1995 TPEAYPRGPGVHQRIAEQAARA--PEAIAVVFGD------QHLSYAELDSRANRLAHRLRAR---GVGPEVRVAIAAERS 2063 (5163)
T ss_pred CCCCCCCCCCHHHHHHHHHHhC--CCCeEEEcCC------CeEcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCC
Q ss_pred HhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccc
Q 037878 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620 (2280)
Q Consensus 541 ~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (2280)
+++++++|||+|+|++||||||.+|.+| +.++++++++++++++....... +................
T Consensus 2064 ~~~~~~~lAil~aGa~~vpld~~~p~~r-------l~~il~~~~~~~vl~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 2131 (5163)
T PRK12316 2064 FELVVALLAVLKAGGAYVPLDPNYPAER-------LAYMLEDSGAALLLTQRHLLERL-----PLPAGVARLPLDRDAEW 2131 (5163)
T ss_pred HHHHHHHHHHHhhceEEeecCCCCCHHH-------HHHHHHhcCCCEEEeChhhhhhc-----ccccccceEeccchhhh
Q ss_pred cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 621 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
.......+.....++|+|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|+.++ .+++.+|.
T Consensus 2132 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~ 2210 (5163)
T PRK12316 2132 ADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAH-EQWFHPLL 2210 (5163)
T ss_pred hccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHH-HHHHHHHh
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|+++++.+...+ +|..+.+.++++++|++..+|++++.+.+..... ...++||.+++|||+++++++++|.
T Consensus 2211 ~G~~~~~~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------~~~~~lr~~~~gGe~l~~~~~~~~~ 2282 (5163)
T PRK12316 2211 NGARVLIRDDELW--DPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD------GRPPAVRVYCFGGEAVPAASLRLAW 2282 (5163)
T ss_pred CCCEEEeCCcccC--CHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc------cCCcceeEEEEecccCCHHHHHHHH
Q ss_pred HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEE
Q 037878 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860 (2280)
Q Consensus 781 ~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i 860 (2280)
+.+ ++..++|.||||||++.++......... ......++|+|++|++++|+|+++ .++|.|++|||||
T Consensus 2283 ~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~i~d~~~--~~vp~g~~GEl~i 2350 (5163)
T PRK12316 2283 EAL-----RPVYLFNGYGPTEAVVTPLLWKCRPQDP-----CGAAYVPIGRALGNRRAYILDADL--NLLAPGMAGELYL 2350 (5163)
T ss_pred HhC-----CCcEEEECccchhheeeeeeeecccccc-----cCCCcCCcccccCCCEEEEECCCC--CCCCCCCeeEEEe
Q ss_pred cCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCc
Q 037878 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939 (2280)
Q Consensus 861 ~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~ 939 (2280)
+|+++++||+|+|++|+++|..+++...+++||||||+||++ ||.|+|+||+|||||++|+||||+|||++|.++|+|.
T Consensus 2351 ~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~ 2430 (5163)
T PRK12316 2351 GGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVR 2430 (5163)
T ss_pred cchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccc
Q ss_pred CCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCc
Q 037878 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSG 1019 (2280)
Q Consensus 940 ~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sG 1019 (2280)
+ |+|++.+++ ....+++++...++.... .+.+++.+.+.++.++.|..++.+++||+|+||
T Consensus 2431 ~---a~v~~~~~~-------------~~~~l~a~v~~~~~~~~~---~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~G 2491 (5163)
T PRK12316 2431 E---AVVVAQDGA-------------SGKQLVAYVVPDDAAEDL---LAELRAWLAARLPAYMVPAHWVVLERLPLNPNG 2491 (5163)
T ss_pred e---EEEEEEecC-------------CCeEEEEEEEecCCCccC---HHHHHHHHHhhCchhcCcceEeeecccCCCCCC
Q ss_pred ccchHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCCCc
Q 037878 1020 KIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPIT 1099 (2280)
Q Consensus 1020 KvdR~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~~~ 1099 (2280)
||||++|.+............| .+++|+.|+++|+++|+++
T Consensus 2492 KidR~~L~~~~~~~~~~~~~~p-------------------------------------~~~~e~~l~~iw~~vL~~~-- 2532 (5163)
T PRK12316 2492 KLDRKALPKPDVSQLRQAYVAP-------------------------------------QEGLEQRLAAIWQAVLKVE-- 2532 (5163)
T ss_pred ccCHhhcCCCccccccccccCC-------------------------------------CCHHHHHHHHHHHHHhCCC--
Q ss_pred cccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCcchh
Q 037878 1100 KVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQLMTDSSFTPEPETDFDEFD 1179 (2280)
Q Consensus 1100 ~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (2280)
.|+.+||||+||||||+||++++++++.+|+++++.++|++||+++||+.+......... .........
T Consensus 2533 ~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~~~~~~~-----------~~~~~~~~~ 2601 (5163)
T PRK12316 2533 QVGLDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESGQTSRAP-----------VLQKVTRVQ 2601 (5163)
T ss_pred ccCCCCchhhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhhhhcccc-----------ccCCccccc
Q ss_pred hhhhhhhhhHHHHHHHH
Q 037878 1180 MEVSKARQCGIWIFQLL 1196 (2280)
Q Consensus 1180 ~~~~s~~q~~~~~~~~l 1196 (2280)
..+.+..|.++|+++++
T Consensus 2602 ~~pls~~Q~~lw~~~~~ 2618 (5163)
T PRK12316 2602 PLPLSHAQQRQWFLWQL 2618 (5163)
T ss_pred CCCCChHHHhHHHHccc
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=791.62 Aligned_cols=617 Identities=19% Similarity=0.187 Sum_probs=462.5
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCC---ceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEG---VAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVD 545 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g---~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~v 545 (2280)
.++.+++++++++ +|+++|+.+..... ...+++||+||+++++++|++|++. |+++||+|+++++|++++++
T Consensus 236 ~~l~~~~~~~a~~--~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~---gv~~g~~V~i~~~~~~~~i~ 310 (1389)
T TIGR03443 236 GAIHDIFADNAEK--HPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKT---GIKRGDVVMIYAYRGVDLVV 310 (1389)
T ss_pred CcHHHHHHHHHHh--CCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEecCCHHHHH
Confidence 5789999998887 48999997643210 1136899999999999999999998 89999999999999999999
Q ss_pred HHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccc---hhhcc---CC---CCCCCccccccc--
Q 037878 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYH---SAVRV---GS---WPNLPWLHTDSW-- 614 (2280)
Q Consensus 546 a~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~---~~~~~---~~---~~~~~~~~~~~~-- 614 (2280)
++|||+++|+++||+||.+|.++ +.+++++++++++++..... ..... .. ....+.+.....
T Consensus 311 ~~lA~l~~G~~~vpldp~~p~~~-------~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1389)
T TIGR03443 311 AVMGVLKAGATFSVIDPAYPPAR-------QTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS 383 (1389)
T ss_pred HHHHHHhhCcEEeccCCCCcHHH-------HHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccc
Confidence 99999999999999999999998 88999999999998865321 00000 00 000110100000
Q ss_pred c-----ccc-cccc---c--ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 037878 615 V-----KNS-KNLL---A--ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683 (2280)
Q Consensus 615 ~-----~~~-~~~~---~--~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~ 683 (2280)
. ... .... . ..........++|+|||+|||||||+||||+++|+++++.+.+....+++.++|++++++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~ 463 (1389)
T TIGR03443 384 LVGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLS 463 (1389)
T ss_pred ccccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 0 000 0000 0 000111234679999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccE
Q 037878 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763 (2280)
Q Consensus 684 pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~ 763 (2280)
|++|+.++ .+++.+|+.|+++++.+.. ...+|..+.+.++++++|++.++|++++.+.... ..+++++|.
T Consensus 464 ~~~~d~~~-~~i~~~L~~G~~l~~~~~~-~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~--------~~~~~~lr~ 533 (1389)
T TIGR03443 464 GIAHDPIQ-RDMFTPLFLGAQLLVPTAD-DIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA--------TTPIPSLHH 533 (1389)
T ss_pred CceecchH-HHHHHHHhCCCEEEEcChh-hccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc--------cccCCCccE
Confidence 99999887 5789999999999887543 3458889999999999999999999988775321 135789999
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCC-CceeeccccCCCCCceEEEEc
Q 037878 764 LMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQ-GRVCCGYVDQNDPDVDIRIVN 842 (2280)
Q Consensus 764 l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~-g~~~~g~vG~p~pg~~v~Ivd 842 (2280)
+++|||++++++.+++.+.. +++.++|.||+||++++++............+. ......++|+|+++++++|+|
T Consensus 534 ~~~gGe~l~~~~~~~~~~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd 608 (1389)
T TIGR03443 534 AFFVGDILTKRDCLRLQTLA-----ENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN 608 (1389)
T ss_pred EEEecccCCHHHHHHHHHhC-----CCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEEC
Confidence 99999999999999988764 578899999999998876654321110000000 001235689999999999999
Q ss_pred CCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccC---------------------CCCCceeecCcEEEE
Q 037878 843 PETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQN---------------------NRGRKYTRTGDLGRI 901 (2280)
Q Consensus 843 ~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~---------------------~~~~~~yrTGDlgr~ 901 (2280)
+++...++|.|++|||||+||++++||+|+|++|+++|..+++. .+++|||||||+|++
T Consensus 609 ~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~ 688 (1389)
T TIGR03443 609 RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRY 688 (1389)
T ss_pred CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeE
Confidence 87655667899999999999999999999999999999765321 134689999999999
Q ss_pred E-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC
Q 037878 902 I-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK 980 (2280)
Q Consensus 902 ~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~ 980 (2280)
+ ||.|+|+||+|||||++|+||+|.|||++|.+||.|.+ ++|+..+++.. +...+++++.. .....
T Consensus 689 ~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~---a~v~~~~~~~~---------~~~lva~vv~~-~~~~~ 755 (1389)
T TIGR03443 689 LPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRE---NVTLVRRDKDE---------EPTLVSYIVPQ-DKSDE 755 (1389)
T ss_pred cCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchhe---eEEEEeeCCCC---------CeEEEEEEecc-Ccccc
Confidence 7 99999999999999999999999999999999999975 66666544311 11223333221 00000
Q ss_pred C------------C---------CHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCCCCCCC
Q 037878 981 P------------V---------DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVP 1039 (2280)
Q Consensus 981 ~------------~---------~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~~lp 1039 (2280)
. . ..+..+.+++.+.++++.++.|..++.+++||+|+||||||++|.+.+.+.... .
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~-~- 833 (1389)
T TIGR03443 756 LEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAA-V- 833 (1389)
T ss_pred ccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhhh-h-
Confidence 0 0 011234455555555555555666777799999999999999864321110000 0
Q ss_pred CccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHH
Q 037878 1040 EPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVR 1119 (2280)
Q Consensus 1040 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~ 1119 (2280)
.. .. .......+.++.|+.++++|+++|+.+.+.|+.++|||++|||||+|++
T Consensus 834 ---------~~---~~---------------~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff~lGgdSL~a~~ 886 (1389)
T TIGR03443 834 ---------AK---NR---------------SASAADEEFTETEREIRDLWLELLPNRPATISPDDSFFDLGGHSILATR 886 (1389)
T ss_pred ---------hc---cc---------------cccccCCCCCHHHHHHHHHHHHHhCCCccccCcCcchhhcCccHHHHHH
Confidence 00 00 0001122456788999999999999876679999999999999999999
Q ss_pred HHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1120 AAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1120 l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
++++|++.+|+++++.++|++||+++||++++...
T Consensus 887 l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 887 MIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred HHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 99999999999999999999999999999997654
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-67 Score=829.52 Aligned_cols=677 Identities=29% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCC
Q 037878 461 PGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540 (2280)
Q Consensus 461 ~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s 540 (2280)
+..+++...++.+++++++++. |+++|+.+.+.++.+.+++||+||+++++++|+.|++. | ++||+|+|+++|+
T Consensus 1 ~~~~~~~~~tl~~~l~~~a~~~--p~~~a~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~---~-~~gd~V~i~~~~s 74 (4334)
T PRK05691 1 MMDAFELPLTLVQALQRRAAQT--PDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQAR---A-SFGDRAVLLFPSG 74 (4334)
T ss_pred CCCccCCCCCHHHHHHHHHHhC--CCceEEEEecCCCCcceEeeHHHHHHHHHHHHHHHHhc---C-CCCCEEEEEcCCC
Q ss_pred HhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccc
Q 037878 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620 (2280)
Q Consensus 541 ~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (2280)
+++++++|||+++|+++||++|..+... ....++.++++++++++++++....+.+.... .............+...
T Consensus 75 ~~~~~~~la~l~aG~~~vp~~p~~~~~~--~~~~rl~~il~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (4334)
T PRK05691 75 PDYVAAFFGCLYAGVIAVPAYPPESARR--HHQERLLSIIADAEPRLLLTVADLRDSLLQME-ELAAANAPELLCVDTLD 151 (4334)
T ss_pred HHHHHHHHHHHHhCceEeccCCcccccc--cHHHHHHHHHHhCCCCEEEECHHHHHHHHhhh-hcccccCceEEEccccc
Q ss_pred cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCC--CCCcEEEEEcCchhhhhHHHHHHHH
Q 037878 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS--TSKTVLVSWLPQYHDMGLIGGLFTA 698 (2280)
Q Consensus 621 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~gl~~~i~~~ 698 (2280)
.............++|+|||+|||||||+||||++||+|+++++......+++ +++|++++++|++|++|++..++.+
T Consensus 152 ~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKGV~lsH~~l~~~~~~~~~~~~~~~~~~d~~l~~lp~~h~~g~~~~~~~~ 231 (4334)
T PRK05691 152 PALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQP 231 (4334)
T ss_pred ccccccccCCCCCcCCeEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHhCCCCCCCceEEEeccchhhhHHHHHHHHH
Q ss_pred HHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHH
Q 037878 699 MVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKR 778 (2280)
Q Consensus 699 L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~ 778 (2280)
++.|+++++.++..+..+|..|++.++++++|+...+|..+..+........... .++++||.+++|||+++++++++
T Consensus 232 l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~--~~l~~lr~~~~gge~l~~~~~~~ 309 (4334)
T PRK05691 232 IFSGVPCVLMSPAYFLERPLRWLEAISEYGGTISGGPDFAYRLCSERVSESALER--LDLSRWRVAYSGSEPIRQDSLER 309 (4334)
T ss_pred HHCCCEEEEeCcHHHhhCHHHHHHHHHHcCCEEecCCchHHHHHHHhcCHHHhcc--cccccceEEEECcccCCHHHHHH
Q ss_pred HHHHhcCCCCCCcccccccCccccccceecccCCCCcee------------ecCCCceeeccccCCCCCceEEEEcCCCC
Q 037878 779 FVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPII------------LDWQGRVCCGYVDQNDPDVDIRIVNPETS 846 (2280)
Q Consensus 779 ~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~------------~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~ 846 (2280)
|.+.+...|+....++|+||+||+++++++......... .........+++|+|+||++++|+|++++
T Consensus 310 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~Ivd~~~~ 389 (4334)
T PRK05691 310 FAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSL 389 (4334)
T ss_pred HHHHhhhcCCCccccccCcchhhheeeeecccCCCCCceEeecHhHHhcCCccCCCCCceeccCCccCCCEEEEEcCCCC
Q ss_pred cccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechH
Q 037878 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSA 926 (2280)
Q Consensus 847 ~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~ 926 (2280)
..+ |.|++|||||+||++++||||+|++|+++|.. .++++||||||+|+++||.|+|+||+|||||++|+||+|+
T Consensus 390 ~~~-~~g~~GEl~v~Gp~v~~GY~~~~~~T~~~f~~----~~g~~w~rTGDlg~~~dG~l~i~GR~kd~iki~G~~v~p~ 464 (4334)
T PRK05691 390 EVL-GDNRVGEIWASGPSIAHGYWRNPEASAKTFVE----HDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLYPQ 464 (4334)
T ss_pred cCC-CCCCeEEEEecCCccchhhcCChhhhHHHhhc----CCCCceeecCCeEEEECCEEEEEeeecCEEEECCEecChH
Q ss_pred HHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEE
Q 037878 927 DVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVK 1006 (2280)
Q Consensus 927 EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 1006 (2280)
|||++|.+++.+.....++++.++.+ +.........+...........++.+.+++.+.+.+......+.
T Consensus 465 eIE~~l~~~~~v~~~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~ 534 (4334)
T PRK05691 465 DIEKTVEREVEVVRKGRVAAFAVNHQ----------GEEGIGIAAEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVL 534 (4334)
T ss_pred HHHHHHHhcchhhcCCcEEEEEeccC----------CCceEEEEEEechhhcccCCHHHHHHHHHHHHHHHcCCCceEEE
Q ss_pred EecCCCccCCCCcccchHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHH
Q 037878 1007 LIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFL 1086 (2280)
Q Consensus 1007 lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 1086 (2280)
++..++||+|++||+||++|++.|.++.+..+.. .+............+.+++|+.|
T Consensus 535 ~v~~~~lP~t~~GKi~R~~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~e~~l 591 (4334)
T PRK05691 535 LLNPGALPKTSSGKLQRSACRLRLADGSLDSYAL-----------------------FPALQAVEAAQTAASGDELQARI 591 (4334)
T ss_pred EECCCCCCCCCCccccHHHHHHHHHhcccchhhc-----------------------cccccccccccccCCcchHHHHH
Q ss_pred HHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhccCCCCCCCCC
Q 037878 1087 KGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQLMTDSS 1166 (2280)
Q Consensus 1087 ~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~~~~~~~~~~~ 1166 (2280)
+++|+++|+.+ .|+.++|||++|||||+||++++++++++|+.+++.|+|++||+++||+.+.+.. ....
T Consensus 592 ~~~~~~vL~~~--~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l~~~~--------~~~~ 661 (4334)
T PRK05691 592 AAIWCEQLKVE--QVAADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVARQL--------AGGG 661 (4334)
T ss_pred HHHHHHHhCCC--CCCcCCchhhcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHHHHhh--------cccc
Q ss_pred CCCCCCCCCcchhhhhhhhhhhHHHHHHHH
Q 037878 1167 FTPEPETDFDEFDMEVSKARQCGIWIFQLL 1196 (2280)
Q Consensus 1167 ~~~~~~~~~~~~~~~~~s~~q~~~~~~~~l 1196 (2280)
....+..........|++..|.++|+.+++
T Consensus 662 ~~~~~~~~~~~~~~~plS~~Q~~lw~~~~~ 691 (4334)
T PRK05691 662 AAQAAIARLPRGQALPQSLAQNRLWLLWQL 691 (4334)
T ss_pred ccccccCcCCcCCCCCCCHHHHHHHHHHHh
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-67 Score=833.73 Aligned_cols=604 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCC
Q 037878 461 PGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540 (2280)
Q Consensus 461 ~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s 540 (2280)
...+++...++++++++++++. |+++|+.+.+ +++||+||+++++++|++|++. |+++|++|+|+++||
T Consensus 4543 ~~~~~~~~~~~~~l~~~~a~~~--p~~~Av~~~~------~~lTY~eL~~~~~~lA~~L~~~---gv~~g~~V~i~~~~s 4611 (5163)
T PRK12316 4543 TDAGYPATRCVHQLVAERARMT--PDAVAVVFDE------EKLTYAELNRRANRLAHALIAR---GVGPEVLVGIAMERS 4611 (5163)
T ss_pred CCcCCCccccHHHHHHHHHHhC--CCCeEEEeCC------ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCC
Q ss_pred HhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccc
Q 037878 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620 (2280)
Q Consensus 541 ~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (2280)
+++++++|||+++|+++||+||.+|.++ +.++++++++++++++......+ +................
T Consensus 4612 ~~~iv~~lavl~aG~~~vpldp~~p~~r-------l~~il~~~~~~~vl~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 4679 (5163)
T PRK12316 4612 AEMMVGLLAVLKAGGAYVPLDPEYPRER-------LAYMMEDSGAALLLTQSHLLQRL-----PIPDGLASLALDRDEDW 4679 (5163)
T ss_pred HHHHHHHHHHHHhCcEEecCCCCChHHH-------HHHHHHhcCCCEEEechhhhhhc-----ccccCcceEeecchhhc
Q ss_pred cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 621 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
.......+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|+.++ .+++.+|.
T Consensus 4680 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~ 4758 (5163)
T PRK12316 4680 EGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSH-EGLYHPLI 4758 (5163)
T ss_pred ccCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHH-HHHHHHHh
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|+++++.++..+ +|..+++.++++++|++.++|++++.+.+..... .++++||.+++|||+++++++++|.
T Consensus 4759 ~G~~lvi~~~~~~--~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------~~~~~lr~v~~gGe~l~~~~~~~~~ 4830 (5163)
T PRK12316 4759 NGASVVIRDDSLW--DPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD------GEPPSLRVYCFGGEAVAQASYDLAW 4830 (5163)
T ss_pred CCCEEEEcCcccC--CHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc------cCCCCccEEEEecccCCHHHHHHHH
Q ss_pred HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEE
Q 037878 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860 (2280)
Q Consensus 781 ~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i 860 (2280)
+.+ ++++++|.||+||+++.++......... ......++|+|++|++++|+|+++ ..+|.|++|||+|
T Consensus 4831 ~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~i~d~~~--~~~p~g~~GEl~i 4898 (5163)
T PRK12316 4831 RAL-----KPVYLFNGYGPTETTVTVLLWKARDGDA-----CGAAYMPIGTPLGNRSGYVLDGQL--NPLPVGVAGELYL 4898 (5163)
T ss_pred HhC-----CCCEEEecccCccceEEEEEEEcccccc-----cCCCCCcccccccCCEEEEECCCC--CcCCCCCCceEEE
Q ss_pred cCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCc
Q 037878 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939 (2280)
Q Consensus 861 ~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~ 939 (2280)
+|+++++||||+|++|+++|.++++..++.+||||||+|+++ ||.++|+||+|+|||++|+||+|+|||++|.++|+|.
T Consensus 4899 ~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~p~V~ 4978 (5163)
T PRK12316 4899 GGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVR 4978 (5163)
T ss_pred CCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEEEeccccceEeeccEeecHHHHHHHHHhCCCcc
Q ss_pred CCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC--HHHHHHHHHHHHHhcCcceeEEEEecCCCccCCC
Q 037878 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD--KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTT 1017 (2280)
Q Consensus 940 ~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~ 1017 (2280)
+ |+|++.++. .+...+++++........... .++.+.+++.+.+.++.++.|..++.+++||+|+
T Consensus 4979 ~---a~v~~~~~~----------~~~~l~a~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~lp~y~vP~~~~~~~~lP~t~ 5045 (5163)
T PRK12316 4979 E---AVVIAQEGA----------VGKQLVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMPLTP 5045 (5163)
T ss_pred e---EEEEEeeCC----------CCcEEEEEEeCCccccccccccchhhHHHHHHHHhccCchhhCCcceeecccCCCCC
Q ss_pred CcccchHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCC
Q 037878 1018 SGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIP 1097 (2280)
Q Consensus 1018 sGKvdR~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~ 1097 (2280)
||||||++|.+.+.+.....+..| .+++|+.++++|+++|+++
T Consensus 5046 ~GKvdR~~L~~~~~~~~~~~~~~~-------------------------------------~~~~e~~l~~i~~~vL~~~ 5088 (5163)
T PRK12316 5046 NGKLDRKALPQPDASLLQQAYVAP-------------------------------------RSELEQQVAAIWAEVLQLE 5088 (5163)
T ss_pred CcccChhhcCCccccccccccCCC-------------------------------------CcHHHHHHHHHHHHHhCCC
Q ss_pred CccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhccCCC
Q 037878 1098 ITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQPQ 1160 (2280)
Q Consensus 1098 ~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~~~~~ 1160 (2280)
+|+.++|||++|||||.||+|++++++.+|+++++.+||++||+++||++++.........
T Consensus 5089 --~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~~~~~~~~ 5149 (5163)
T PRK12316 5089 --RVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAAGSGDDEK 5149 (5163)
T ss_pred --CCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhcccccccc
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=763.84 Aligned_cols=588 Identities=19% Similarity=0.292 Sum_probs=459.5
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++.+++. |+++|+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+.++++++|
T Consensus 458 ~~l~~~~~~~~~~~--p~~~Al~~~~------~~~Ty~eL~~~~~~la~~L~~~---g~~~g~~V~l~~~~~~~~i~~~l 526 (1296)
T PRK10252 458 TTLSALVAQQAAKT--PDAPALADAR------YQFSYREMREQVVALANLLRER---GVKPGDSVAVALPRSVFLTLALH 526 (1296)
T ss_pred CCHHHHHHHHHHhC--CCCeEEEcCC------CcEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHHHHHH
Confidence 57889998888774 8999987532 4799999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+++|+++||+|+.+|.++ +..+++++++++++++.......... +.......+.... ......
T Consensus 527 a~~~~G~~~vpld~~~p~~~-------~~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~ 591 (1296)
T PRK10252 527 AIVEAGAAWLPLDTGYPDDR-------LKMMLEDARPSLLITTADQLPRFADV--PDLTSLCYNAPLA------PQGAAP 591 (1296)
T ss_pred HHHHhCCEEEecCccCHHHH-------HHHHHHhCCCCEEEECcchhhhcccC--CCceeeecccccc------cccCCC
Confidence 99999999999999999998 88999999999999986544332211 1111111111000 000011
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++++|||+|||||||+||||+++|+++++.+.+....+++.++|++++++|++|+.++ .+++.+|..|+++++.
T Consensus 592 ~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~ 670 (1296)
T PRK10252 592 LQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMA 670 (1296)
T ss_pred CCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEEC
Confidence 122367899999999999999999999999999999999999999999999999999999997 5789999999999987
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
++.. ..+|..+.+.++++++|++..+|+++..+++...... ....++++|.+++|||+++++++++|.+.+
T Consensus 671 ~~~~-~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~---~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~----- 741 (1296)
T PRK10252 671 EPEA-HRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG---ARQSCASLRQVFCSGEALPADLCREWQQLT----- 741 (1296)
T ss_pred Chhc-cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc---ccccCCCccEEEEecCCCCHHHHHHHHhcC-----
Confidence 6543 4589999999999999999999999988876533221 113467899999999999999999998753
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
+++++|.||+||+++.++......... .. ......++|+|++|++++|+|+++ +.+|.|+.|||+|+|+++++|
T Consensus 742 -~~~l~n~YG~TE~~~~~~~~~~~~~~~--~~-~~~~~~~iG~p~~~~~~~i~d~~~--~~~~~g~~Gel~i~g~~~~~G 815 (1296)
T PRK10252 742 -GAPLHNLYGPTEAAVDVSWYPAFGEEL--AA-VRGSSVPIGYPVWNTGLRILDARM--RPVPPGVAGDLYLTGIQLAQG 815 (1296)
T ss_pred -CCEEEeCCCcchhhheeeeeecccccc--cc-cCCCCCCcccccCCCEEEEECCCC--CCCCCCCceEEEecccccchh
Confidence 567999999999998766543211110 00 011235689999999999999764 456899999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEE
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv 947 (2280)
|+|+|+.|+++|..+++. ++++||||||+|+++ ||.++|+||+|||||++|+||+|.|||++|.++|+|.+ ++|+
T Consensus 816 Y~~~~~~t~~~f~~~~~~-~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~---a~v~ 891 (1296)
T PRK10252 816 YLGRPDLTASRFIADPFA-PGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQ---AVTH 891 (1296)
T ss_pred hCCCcccchhhcccCCCC-CCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccc---eEEE
Confidence 999999999999887654 567999999999997 99999999999999999999999999999999999976 4444
Q ss_pred eccccccccccccccCC-CCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHH
Q 037878 948 GVPEEVLSTKGISVSDG-SDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFE 1025 (2280)
Q Consensus 948 ~~~~~~~~~~~~~~~~~-~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~ 1025 (2280)
......-.. ..++ ...+++++ ...+... ..++.+.++++|+. + +.|..++.+++||+|+||||||++
T Consensus 892 ~~~~~~~~~----~~~~~~~lva~v~---~~~~~~~~~~~l~~~l~~~Lp~-~---~~P~~~~~~~~lP~t~~GKidr~~ 960 (1296)
T PRK10252 892 ACVINQAAA----TGGDARQLVGYLV---SQSGLPLDTSALQAQLRERLPP-H---MVPVVLLQLDQLPLSANGKLDRKA 960 (1296)
T ss_pred EEecccccc----CCCCccEEEEEEE---cCCCCCCCHHHHHHHHHhhCch-h---cCCcEEEEecCCCCCCCcChhHHh
Confidence 321000000 0011 12233332 2222222 24555666655554 4 444555666999999999999987
Q ss_pred HHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCCCccccCCC
Q 037878 1026 CLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATD 1105 (2280)
Q Consensus 1026 L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~~~~i~~~~ 1105 (2280)
| +.|..... .....+.+++|+.++++|+++||.+ .++.++
T Consensus 961 L------------~~~~~~~~--------------------------~~~~~~~~~~e~~l~~~~~~~l~~~--~~~~~~ 1000 (1296)
T PRK10252 961 L------------PLPELKAQ--------------------------VPGRAPKTGTETIIAAAFSSLLGCD--VVDADA 1000 (1296)
T ss_pred c------------CCCccccc--------------------------ccCCCCCCHHHHHHHHHHHHHhCCC--CCCCCc
Confidence 4 22210000 0011245678899999999999997 789999
Q ss_pred ChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1106 SLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1106 ~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
|||++|||||++++++++|++.+|+++++.++|++||+++||+++++.
T Consensus 1001 ~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 1001 DFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred CHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999764
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=709.10 Aligned_cols=609 Identities=18% Similarity=0.231 Sum_probs=447.6
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
++.+++.+.+.....|+++|+... +.+||+||+++++++|+.|.++ |+++||+|+++++|++++++++||
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~-------~~~Ty~eL~~~~~~lA~~L~~~---g~~~g~~V~i~~~~~~~~~~~~la 74 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA-------DVVTHGQIHDGAARLGEVLRNR---GLSSGDRVLLCLPDSPDLVQLLLA 74 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec-------CceeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHH
Confidence 678888877765335899998631 2689999999999999999998 899999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccccccccc
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCF 629 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (2280)
|+++|++++|+++..+.++ +.++++++++++++++.......... ............ ........
T Consensus 75 ~~~aG~~~vpi~p~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~ 139 (705)
T PRK06060 75 CLARGVMAFLANPELHRDD-------HALAARNTEPALVVTSDALRDRFQPS-----RVAEAAELMSEA---ARVAPGGY 139 (705)
T ss_pred HHHhCcEEEecCCCCCHHH-------HHHHHhcCCCcEEEEchHHhhhhccc-----ccchhhhhhhhc---cccCCCCC
Confidence 9999999999999999998 88999999999999976543322110 001111110000 00001112
Q ss_pred CCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHH-HHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR-KRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 630 ~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
....++++|||+|||||||+||||+++|+++.+++.... ..+++.+++++++++|++|++++...++.++..|+++++.
T Consensus 140 ~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~ 219 (705)
T PRK06060 140 EPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVIN 219 (705)
T ss_pred CCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEe
Confidence 234578999999999999999999999999988877654 4678889999999999999999877888999999999886
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
+. .+ ++..+...++++++|++.++|+++..+++... ..+++++|.+++|||++++++.++|.+.+
T Consensus 220 ~~-~~--~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-------~~~~~slr~i~~gGe~l~~~~~~~~~~~~----- 284 (705)
T PRK06060 220 SA-PV--TPEAAAILSARFGPSVLYGVPNFFARVIDSCS-------PDSFRSLRCVVSAGEALELGLAERLMEFF----- 284 (705)
T ss_pred CC-CC--CHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc-------cccccceeEEEEecCcCCHHHHHHHHHHc-----
Confidence 53 22 78888999999999999999999988775422 13578999999999999999999998875
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++++++|.||+||++.++...... ....+++|+|+++++++|+|+++ ..++.|+.|||||+|+++++|
T Consensus 285 ~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~iG~p~~~~~v~i~d~~g--~~~~~g~~GEl~i~g~~v~~G 352 (705)
T PRK06060 285 GGIPILDGIGSTEVGQTFVSNRVD----------EWRLGTLGRVLPPYEIRVVAPDG--TTAGPGVEGDLWVRGPAIAKG 352 (705)
T ss_pred CCCceEeeeeccccCceEEeccCC----------CCCcCcccccCCCcEEEEECCCC--CCCCCCCceEEEEccchhhhh
Confidence 357899999999998654332111 11236789999999999999875 345799999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEE
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv 947 (2280)
|+|+|+.+. .+++||+|||+|+++ ||+++|+||+|||||++|+||+|.|||++|.+|++|.+ |+|+
T Consensus 353 Y~~~~~~~~----------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~---a~vv 419 (705)
T PRK06060 353 YWNRPDSPV----------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAE---AAVV 419 (705)
T ss_pred hhCCCcccc----------cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeE---EEEE
Confidence 999998642 135899999999997 99999999999999999999999999999999999875 8888
Q ss_pred eccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 948 GVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
+++++..+ ....++++ ..++...+.+..+.+++.+.+.++.++.|..++.+++||+|+|||+||++|+
T Consensus 420 ~~~~~~~~----------~~~~a~vv--~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~ 487 (705)
T PRK06060 420 AVRESTGA----------STLQAFLV--ATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALR 487 (705)
T ss_pred eecCccCC----------eeEEEEEE--eccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHH
Confidence 87764321 22222222 2222222222234444444444444445555666699999999999999998
Q ss_pred HHhhcCCCCCCCCccc--hhcccccccccccccCCCCCCC--CCCCCcccccCCChhHHHHHHHHHHHHHhCCC-Ccccc
Q 037878 1028 KQFVDGTLNTVPEPLF--TKRKLTRSFTTGTCKEGRTPRP--QLVSSPVASKKMSNKDIVEFLKGLVSEQTGIP-ITKVS 1102 (2280)
Q Consensus 1028 ~~~~~~~~~~lp~p~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~-~~~i~ 1102 (2280)
+.+.......+..... ...................... ................+++.+++.|+++||.+ ++.|+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~a~vl~~~~~~~i~ 567 (705)
T PRK06060 488 KQSPTKPIWELSLTEPGSGVRAQRDDLSASNMTIAGGNDGGATLRERLVALRQERQRLVVDAVCAEAAKMLGEPDPWSVD 567 (705)
T ss_pred hhccchhhhhhhccCcccCchhhhccccCCCcccCCCCCccHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhCCCChhhCC
Confidence 8753221100000000 0000000000000000000000 00000000001112334568999999999985 45699
Q ss_pred CCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhh
Q 037878 1103 ATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVM 1155 (2280)
Q Consensus 1103 ~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~ 1155 (2280)
.+++||++|||||+++++.++|++.+|+.++..++|+|||+.+|+++|.....
T Consensus 568 ~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~~ 620 (705)
T PRK06060 568 QDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAELA 620 (705)
T ss_pred CCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987553
|
|
| >KOG0047 consensus Catalase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-68 Score=597.05 Aligned_cols=295 Identities=23% Similarity=0.355 Sum_probs=283.5
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCccc-CCCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f-~~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|+++|.+||||.||+|+|||++|+.+++++.+| +.||++|+++|||+++|+.+ |+++|+||||+|||++ +|+
T Consensus 64 ERIPERVvHAkGagA~GyFEvThDIt~~~~a~~f~kvgk~Tp~~vRFSTV~gE~GSaDT~RDPRGFAvKFYTe-eGn--- 139 (505)
T KOG0047|consen 64 ERIPERVVHAKGAGAFGYFEVTHDITKYCKADIFSKVGKQTPVLVRFSTVGGESGSADTARDPRGFAVKFYTE-EGN--- 139 (505)
T ss_pred hcCchhhhccccCcceeEEEeechHHHHHHHHHHhhccccCceEEEEEeecccCCCcccccCCCcceEEEEec-ccc---
Confidence 7899999999999999999999999999999999 56999999999999999976 9999999999999998 777
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhccCc-------------chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVP-------------HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
||||+||+||||+||+.+|+.|+|+++++|++++++.. |+...+++.+++|++|++|+.||.|+|+
T Consensus 140 -~DlVgNNtPVFFiRDpikFP~fIHtqKrNPQthlkD~~m~wDf~t~~pEslHqv~~lFsDrGtP~~yrhM~Gyg~hTyk 218 (505)
T KOG0047|consen 140 -WDLVGNNTPVFFIRDPIKFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESLHQVMFLFSDRGTPDGYRHMNGYGSHTYK 218 (505)
T ss_pred -ceeecCCcceEEeecccccchhhhccCCCchhcccCcchhHHHhhcCHhhhhheeeeeccCCCCcccccccccccceEE
Confidence 99999999999999999999999999999999998765 6667778888999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+|||||++|.||+++|+.++|.+.+..+| ||..+||+++|++|++++|.++||+|++
T Consensus 219 ~vNk~G~~~YvkfH~ktdqGiKnLt~e~A~~l~gs~p---------------dya~~DLf~aI~~gnyPsW~~yIQvMt~ 283 (505)
T KOG0047|consen 219 MVNKEGKAHYVKFHFKTDQGIKNLTVEEAARLAGSDP---------------DYAIRDLFNAIENGNYPSWTMYIQVMTP 283 (505)
T ss_pred EEccCCceEEEEEEEecCCCcccCCHHHHHHhcCCCc---------------cHHHHHHHHHHHcCCCCceEEEEEeeCH
Confidence 9999999999999999999999999999998875555 5999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
++++.++|+++|.||.||++++|+++||+|+||+|++| +|+||++|+|+|++|||++|+ |++||+|.++|.
T Consensus 284 ~qa~K~~fnpfDvTKvWP~~~~PL~~VGk~vLn~Np~NyFaevEQ~AF~Pa~~VPGIe~S~-------Dk~LQ~RlFSY~ 356 (505)
T KOG0047|consen 284 EQAEKFRFNPFDVTKVWPHKDYPLIPVGKMVLNRNPDNYFAEVEQAAFSPAHIVPGIEPSP-------DKMLQGRLFSYP 356 (505)
T ss_pred hHhhcCCCCccceeccccCcCccccccceEEecCCchHHHHHHHHhccCccccCCCcccCC-------chhheeeeeccC
Confidence 99999999999999999999999999999999999999 999999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+++++|+|.+ |+|++|| ||.
T Consensus 357 DthRHRLGpN--------y~QlPVN-----cPy 376 (505)
T KOG0047|consen 357 DTHRHRLGPN--------YLQLPVN-----CPY 376 (505)
T ss_pred cccccccCCC--------eeecccC-----CCc
Confidence 9999999999 7899999 987
|
|
| >COG0753 KatE Catalase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-66 Score=599.95 Aligned_cols=300 Identities=23% Similarity=0.382 Sum_probs=284.6
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||.||+|+|++++++++++++.+|+ +||++|+++|||++.|.++ |+.+|+||||+|||++ +||
T Consensus 56 ErIPERvvHAkG~GA~G~F~~t~dis~yT~A~~f~e~Gk~TP~fvRFSTV~g~~gsaDt~RD~RGFA~KfYTe-eGN--- 131 (496)
T COG0753 56 ERIPERVVHAKGSGAHGYFEVTEDISKYTKAKLFQEVGKKTPVFVRFSTVAGERGSADTVRDVRGFALKFYTE-EGN--- 131 (496)
T ss_pred ccCcchheecccccceeEEEeccchHhhhcchhhcccCcccceEEEEEeccCCCCCcccccccccceEEEeec-ccc---
Confidence 78999999999999999999999999999999996 7999999999999999866 9999999999999998 777
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhccC----------c---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRV----------P---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
||||+||+||||+||+.+|++|+|+++++|.+.+.+. | |+...+.+.+++|.||++|++||+|+|+
T Consensus 132 -wDlVGNNtPVFFirDa~KFPdfiH~~Kp~P~t~l~~~~~~wDF~s~~PES~H~vt~l~SDrGiP~syR~M~GfgvHtf~ 210 (496)
T COG0753 132 -WDLVGNNTPVFFIRDAIKFPDFIHAQKPDPRTNLRDADTFWDFWSLNPESLHQVTWLMSDRGIPASYRHMEGFGVHTFK 210 (496)
T ss_pred -ceeeccCcceEEeeChhhchhhhhhcCCCCCcccccchhhhhhhhcCcHHHHHHHHHhcCCCCChhhhcCCCccceeEE
Confidence 9999999999999999999999999999998887765 2 7778888888999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+||.+..+.++ ||.++||++.|++|++++|+|+||++++
T Consensus 211 ~vN~~Ge~~~VKfH~k~~qGik~Lt~~EA~ki~g~d~---------------d~~~~dL~eaIe~Gd~P~W~l~VQvm~~ 275 (496)
T COG0753 211 FVNAKGKRVWVKFHFKPKQGIKNLTWDEAAKLAGKDP---------------DYHQRDLYEAIENGDFPEWDLYVQVMPE 275 (496)
T ss_pred EEcCCCCEEEEEEEEEeccccccCCHHHHHHHhccCc---------------cHHHHHHHHHHHcCCCCceEEEEEecCh
Confidence 9999999999999999999999999999998865444 5999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.+.++|+++|+||.||++++|++.||+|+||+|++| +++||.+|+|.|+++||++|+ ||+||+|.++|.
T Consensus 276 ~da~k~~f~~~D~TKvWp~~~~P~~~VG~m~LnrNpdN~FaE~EQaAF~p~nlVPGi~fS~-------D~lLQgRlFsY~ 348 (496)
T COG0753 276 EDAEKFDFDPLDLTKLWPEEDYPLIEVGTMVLNRNPDNFFAEVEQAAFAPGNLVPGIDFSP-------DPLLQGRLFSYG 348 (496)
T ss_pred hHhhcCCCCCCccccccccccCCceEeeEEEEccCccchhhhhhhhccccccCCCCCCCCC-------Chhhhhccccch
Confidence 99999999999999999999999999999999999999 999999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCccc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPMAA 2046 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2280)
++|++|+|.++ .+++||.|.||+++
T Consensus 349 DtqryRlG~N~----------~qlPvN~P~~p~~~ 373 (496)
T COG0753 349 DTQRYRLGPNY----------HQIPVNRPKCPVHN 373 (496)
T ss_pred hhhHhhcCCCc----------ccccCCCCCCcccc
Confidence 99999999885 45677799999965
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=618.52 Aligned_cols=497 Identities=22% Similarity=0.295 Sum_probs=396.9
Q ss_pred HHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHc
Q 037878 474 YLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRA 553 (2280)
Q Consensus 474 ~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~a 553 (2280)
.++++.... .+++.|++|.++++.. +++||+||.++++++|+.|++.+ |+ +||||++++|+.+|.++++|||+++
T Consensus 14 ~~dr~~~~~-~~~~~aii~~~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~--gv-kGDrV~iymp~~pe~~~a~LA~~ri 88 (528)
T COG0365 14 ALDRHLEAD-RPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKDLG--GV-KGDRVAIYMPNSPEAVIALLATARI 88 (528)
T ss_pred hhhhhhhcc-CCCceEEEEEcCCCCc-eEEEHHHHHHHHHHHHHHHHHhC--CC-CCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 345554432 2689999999887655 89999999999999999998753 78 9999999999999999999999999
Q ss_pred CCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCC-CC-----ccccccccccccc--ccccc
Q 037878 554 KVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPN-LP-----WLHTDSWVKNSKN--LLAEN 625 (2280)
Q Consensus 554 Ga~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~--~~~~~ 625 (2280)
||+++|+.+..+.+. +...+++++++++++.+......+...... .. .+..........+ .....
T Consensus 89 GAI~~~vf~~f~~~a-------l~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~~ 161 (528)
T COG0365 89 GAIPAVVSPGLSAEA-------VADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASE 161 (528)
T ss_pred CCEEeecccCCCHHH-------HHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccCC
Confidence 999999999998877 889999999999999876544322111000 00 0000000000000 01111
Q ss_pred ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHH-HHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccce
Q 037878 626 VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL-MRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGST 704 (2280)
Q Consensus 626 ~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~ 704 (2280)
..+..+.+++|+++|+|||||||+||||+|+|++++..... ....+.+.++|++++..++.|.+|....++.+|..|++
T Consensus 162 ~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat 241 (528)
T COG0365 162 KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGAT 241 (528)
T ss_pred CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCe
Confidence 22234478899999999999999999999999986665544 44567888999999999999999999999999999999
Q ss_pred EEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhc
Q 037878 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTR 784 (2280)
Q Consensus 705 ~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~ 784 (2280)
.++++...+- +|..++++++++++|++.+.|+++++|.+... ...+|+++||.+.+.|||++++..+++.+.+
T Consensus 242 ~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-----~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~- 314 (528)
T COG0365 242 TVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-----GEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL- 314 (528)
T ss_pred EEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----cccccchhheeeeccCCCCCHHHHHHHHHHh-
Confidence 9999887766 79999999999999999999999999986543 2348899999999999999999999999985
Q ss_pred CCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCC-
Q 037878 785 PFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP- 863 (2280)
Q Consensus 785 ~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp- 863 (2280)
++.+.+.||+||++.+...... + ...++.|.|+||+++.|+|++ + +.+++|+ |+|+|+.|
T Consensus 315 -----g~~i~d~~gqTEtg~~~~~~~~---~--------~~~g~~g~p~pG~~~~vvdd~-g-~~~~~~~-G~Lvi~~~~ 375 (528)
T COG0365 315 -----GVWILDIYGQTETGMGFIAGRP---P--------VKNGSSGLPLPGYAVRRVDDE-G-NPVPPGV-GELVVRLPW 375 (528)
T ss_pred -----CCCEeccccccccCccccCCCC---C--------cCCCCCCCCCCCceeEEECCC-C-CcCCCCc-eEEEEeCCC
Confidence 4889999999999943322111 1 123445999999999999988 4 3446888 99999987
Q ss_pred -CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCC
Q 037878 864 -SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRP 941 (2280)
Q Consensus 864 -~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~ 941 (2280)
++++|||||||.+.++|.. +||.|||.+++| ||+++|+||.||+||+.|+||.+.|||++|.+||+|.+
T Consensus 376 p~~~~~~w~d~er~~~~y~~--------~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaE- 446 (528)
T COG0365 376 PGMALTYWNDPERYKEAYFG--------RWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAE- 446 (528)
T ss_pred chhhhhhhCCHHHHHHHHhh--------ceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceee-
Confidence 9999999999999999864 399999999997 99999999999999999999999999999999999987
Q ss_pred ceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCccc
Q 037878 942 GCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKI 1021 (2280)
Q Consensus 942 ~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKv 1021 (2280)
|+|+++||+.-++ . .++++.++++...+ ++.+.|++++.+.......|-.+..+++||+|.||||
T Consensus 447 --aAvVg~pd~~kg~----------~--v~afVvL~~g~~~~-~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI 511 (528)
T COG0365 447 --AAVVGVPDPGKGQ----------I--VLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKI 511 (528)
T ss_pred --eEEEeccCCCCCc----------E--EEEEEEecCCCChH-HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccH
Confidence 9999999975432 1 22333345565555 7788888877665444455666777799999999999
Q ss_pred chHHHHHHhhc
Q 037878 1022 KRFECLKQFVD 1032 (2280)
Q Consensus 1022 dR~~L~~~~~~ 1032 (2280)
.|+.|++.+.+
T Consensus 512 ~R~~lr~~~~~ 522 (528)
T COG0365 512 QRRLLRKILHK 522 (528)
T ss_pred HHHHHHHHHhh
Confidence 99999988653
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=569.05 Aligned_cols=504 Identities=25% Similarity=0.336 Sum_probs=410.1
Q ss_pred CCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 467 ELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 467 ~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
+..|+.+.++..+++. ||+.|.++..++ .++||+|+.+.++++|++|... |+++||||+++.||+.+|+..
T Consensus 48 ~~~Tigq~l~~~t~~v--~dkea~Vf~~eg----~R~Tf~~~~~ev~slAaGll~l---GL~kGDrVgvwgpN~~~w~l~ 118 (596)
T KOG1177|consen 48 DSETIGQLLETTTERV--PDKEAAVFDHEG----IRLTFSEFVSEVESLAAGLLSL---GLKKGDRVGVWGPNSYEWVLC 118 (596)
T ss_pred ccccHHHHHHHHhhcc--CcceEEEEeecc----chhhHHHHHHHHHHHHhhHHhh---cCCCCCEEEEecCChHHHHHH
Confidence 4568999999988875 899998887654 4699999999999999999999 999999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh------------hccC--------CCCCC
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA------------VRVG--------SWPNL 606 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~------------~~~~--------~~~~~ 606 (2280)
+|||.++|.+.|+++|.++.+. ++..+++.++++++....+... +... .++.+
T Consensus 119 ~lA~A~AG~v~v~~NP~Yq~~e-------lr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~l 191 (596)
T KOG1177|consen 119 QLACARAGLVLVNLNPAYQSEE-------LRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPEL 191 (596)
T ss_pred HHHHHHhceEEeccCcccccHH-------HHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccc
Confidence 9999999999999999999777 8899999999999987644321 1111 11222
Q ss_pred Ccccccc-------------cccc-ccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC
Q 037878 607 PWLHTDS-------------WVKN-SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK 672 (2280)
Q Consensus 607 ~~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~ 672 (2280)
..+...+ .... ..+....-........|||++.|.|||||||.|||+.+||-|++++......+++
T Consensus 192 thvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g 271 (596)
T KOG1177|consen 192 THVILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG 271 (596)
T ss_pred eEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC
Confidence 2111111 0000 0000000001112357899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccccc
Q 037878 673 STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK 752 (2280)
Q Consensus 673 ~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~ 752 (2280)
+.++++++...|++|.+|.+..++.+|..|+++|+++|. .+|...++.|+++++|.+.++|+++..+++......
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~---f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~-- 346 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPS---FDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQ-- 346 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCC---CChHHHHHHHHhhceEEEecChHHHHHHhcchhhcc--
Confidence 999999999999999999999999999999999998773 399999999999999999999999999986654443
Q ss_pred ccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCC
Q 037878 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQN 832 (2280)
Q Consensus 753 ~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p 832 (2280)
.+++++|-.+.||+++|+++++....... + ..+..+||+|||+.+.+.....+.+ .....++|+-
T Consensus 347 ---~~~s~lr~~vigGa~~s~eLlk~iv~~~~---m--~~i~v~YG~TEts~v~~~~~~~D~~-------~~~~ksVG~~ 411 (596)
T KOG1177|consen 347 ---VDLSSLRKGVIGGAPVSPELLKLIVNQMN---M--KDIAVAYGLTETSPVLFMSLLGDPP-------EERIKSVGHL 411 (596)
T ss_pred ---CchhhhhhheeCCCCCCHHHHHHHHHhhC---c--eeeEEEeeccccCcceeeecCCCCH-------HHHHhhhhhc
Confidence 78999999999999999999999987643 2 2378899999999887766543332 2345688999
Q ss_pred CCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEec
Q 037878 833 DPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGR 911 (2280)
Q Consensus 833 ~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR 911 (2280)
+++.+..|+|.++ ..+|.|..||||+||++++.|||+++++|.++..+ ++||+|||+++++ +|.++++||
T Consensus 412 m~h~Ea~iv~~~g--~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~-------drW~~TGDi~~m~enG~i~iVGR 482 (596)
T KOG1177|consen 412 MDHYEAAIVDKDG--SEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGN-------DRWYDTGDIAVMDENGTIEIVGR 482 (596)
T ss_pred ccccccccccCCC--CccccCCCceEEEEechhheeecCCcccchhhccc-------ccceecCceEEEcCCCcEEEEEc
Confidence 9999999999765 45678999999999999999999999999988754 6999999999997 999999999
Q ss_pred CCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHH
Q 037878 912 IKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIK 991 (2280)
Q Consensus 912 ~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~ 991 (2280)
.||+|+.+|++|+|.|||+.|.+||.|.+ +.|+|++|+.+++. .++++-.-+..++....+++.+.++
T Consensus 483 skdmI~rGGENVyP~ElE~fL~~hp~V~~---a~VVGV~D~R~GE~---------VCA~vRLqe~~e~~~t~E~lKa~Ck 550 (596)
T KOG1177|consen 483 SKDMIIRGGENVYPTELEDFLNKHPLVKE---AHVVGVPDERLGEE---------VCACVRLQEGAEGKTTAETLKAMCK 550 (596)
T ss_pred ccCeEEeCCcccChHHHHHHHhhCCCeee---EEEEccCCCcccce---------EEEEEEeeccccccccHHHHHHHHh
Confidence 99999999999999999999999999986 89999999887642 2233333222233334477888888
Q ss_pred HHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 992 TRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 992 ~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.+++ ++++|... +..+++|+|.+|||+|.+++++.+
T Consensus 551 ~kla-HFKiPky~---vf~~~FPlT~tGKIqKFeir~~~k 586 (596)
T KOG1177|consen 551 GKLA-HFKIPKYF---VFVDEFPLTTTGKIQKFEIREMSK 586 (596)
T ss_pred cccc-cccCCcEE---EEeccCcccccccchhHHHHHHHH
Confidence 8854 57776543 444889999999999999999976
|
|
| >cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-63 Score=599.09 Aligned_cols=296 Identities=23% Similarity=0.371 Sum_probs=271.1
Q ss_pred eecccccccccccceeEEEEecCCCCCCcCcccCC-CceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCcc
Q 037878 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHP-GKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSSL 1787 (2280)
Q Consensus 1711 ~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~-g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~~ 1787 (2280)
+++||++||||+|++|+|++++|+++++++++|+. |+++||++|||+++|+++ |+.+|+|||||||+++ +|+
T Consensus 1 rIPER~vHAKG~ga~G~F~~t~d~s~~t~A~~f~~~gk~tPv~vRFStv~G~~gs~Dt~rd~RGfAvKF~t~-eG~---- 75 (429)
T cd08156 1 RIPERVVHAKGAGAFGTFEVTHDITKYTKAKIFSEVGKKTPVFVRFSTVAGERGSADTERDPRGFALKFYTE-EGN---- 75 (429)
T ss_pred CCCcccccCccceEEEEEEECCCchHHHhhhhccCCCceeeEEEecccCCCCCCCCccCCCcCeEEEEEEcC-CCc----
Confidence 57999999999999999999999999999999954 999999999999999865 9999999999999997 454
Q ss_pred eeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEEE
Q 037878 1788 LDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRLF 1854 (2280)
Q Consensus 1788 ~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~~ 1854 (2280)
|||||||+||||++|+++|++|+++.+++|.+.++ .+| |....+.+.+++|.||++|+|||+|+|+|
T Consensus 76 ~DlV~nn~PvFfirdp~~Fp~~i~a~k~~P~t~~~d~~~~~df~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gvhtf~~ 155 (429)
T cd08156 76 WDLVGNNTPVFFIRDPIKFPDFIHTQKRNPQTNLKDPDMFWDFWSLSPESLHQVTILFSDRGIPDGYRHMNGYGSHTFSL 155 (429)
T ss_pred eeeeeecCcccccCCHHHhhHhhhccCCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCccccceEEE
Confidence 99999999999999999999999999998865544 344 44455666678999999999999999999
Q ss_pred EEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCC
Q 037878 1855 RFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIP 1934 (2280)
Q Consensus 1855 ~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~ 1934 (2280)
+|++|+.+||||||+|.+|+++++.+|+.+.... ++|||++||+++|++|++++|+|+||+++++
T Consensus 156 vn~~G~~~~Vk~h~~p~~G~~~l~~eea~~~~g~---------------~~d~l~~dL~~~I~~G~~P~w~l~vQv~~~~ 220 (429)
T cd08156 156 VNAKGERFWVKFHFKTDQGIKNLTNEEAAELAGE---------------DPDYAQRDLFEAIERGDFPSWTLYVQVMPEE 220 (429)
T ss_pred EcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhCC---------------CCCHHHHHHHHHHhcCCCceEEEEEEEechh
Confidence 9999999999999999999999999998876432 4569999999999999999999999999999
Q ss_pred CccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHHh
Q 037878 1935 QDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEI 2012 (2280)
Q Consensus 1935 d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~ 2012 (2280)
|...++|+++|+||.||++++|++++|+|+||+++++ ++|||++|+|.++++||+||+ |||||+|.++|.+
T Consensus 221 d~~~~~f~~~D~Tk~Wp~~~~p~i~vG~l~Ln~n~~n~f~e~eq~aF~P~~lvpGI~~S~-------Dp~Lq~R~faY~d 293 (429)
T cd08156 221 DAEKYRFNPFDLTKVWPHKDYPLIEVGKLELNRNPENYFAEVEQAAFSPSNLVPGIGFSP-------DKMLQGRLFSYAD 293 (429)
T ss_pred HhhcCCCCCCcCCccCCccCcceEEeEEEEEecCCcchhhhhheecccCcCCCCCccCCC-------CccccccccccHh
Confidence 9999999999999999999999999999999999998 899999999999999999999 9999999999999
Q ss_pred hhHhhcCCCCchhHHHhhhcccccccCCCCC
Q 037878 2013 CQHLRNGEPLPESWRIFLEQSDVKVDLSGCP 2043 (2280)
Q Consensus 2013 s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2280)
|+++|+|.+ ++|++|| .|.|+
T Consensus 294 t~~~Rlg~N--------~~qlPvN--~p~~~ 314 (429)
T cd08156 294 AHRYRLGVN--------YHQLPVN--RPKCP 314 (429)
T ss_pred hhhcCCCCC--------HhhCCCC--CCCCC
Confidence 999999998 5776666 44444
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes. |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-60 Score=602.59 Aligned_cols=485 Identities=25% Similarity=0.379 Sum_probs=387.4
Q ss_pred ceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCcc
Q 037878 487 KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPL 566 (2280)
Q Consensus 487 ~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~ 566 (2280)
.+.+++...+| +.+||+|+.+++.++|..|.+++ .|+++||+|++++||+++++++++||+.+|+++.|++|.+..
T Consensus 33 ~~~~i~~~~~g---~~~T~~e~~~~~~r~A~~L~~~~-~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~ 108 (537)
T KOG1176|consen 33 NTSLVYQDSDG---RELTYSELHDRCRRLASALSELG-LGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTA 108 (537)
T ss_pred cceEEEecCCC---cEEcHHHHHHHHHHHHHHHHhcC-CCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCH
Confidence 36666655443 58999999999999999999771 248999999999999999999999999999999999999887
Q ss_pred ccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCccccc---------cccccc---cccccccccc-cCCC
Q 037878 567 QRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHTD---------SWVKNS---KNLLAENVVC-FTES 632 (2280)
Q Consensus 567 ~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~---~~~~~~~~~~-~~~~ 632 (2280)
.. +...++++++++++++.+....+.... ......+... +..... ....+..... ..+.
T Consensus 109 ~e-------i~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T KOG1176|consen 109 SE-------IAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDGIRPV 181 (537)
T ss_pred HH-------HHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcccccC
Confidence 77 889999999999999887665442211 0001111111 000000 0000000000 3445
Q ss_pred CCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccc
Q 037878 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLT 712 (2280)
Q Consensus 633 ~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~ 712 (2280)
..+|++.|+|||||||.||||++||+|++............+..++.++.+|++|.+|+...+.+.+..|+++++...
T Consensus 182 ~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~-- 259 (537)
T KOG1176|consen 182 SEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRK-- 259 (537)
T ss_pred CCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCC--
Confidence 669999999999999999999999999999887777777788899999999999999997766667777777766542
Q ss_pred cccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcc
Q 037878 713 FIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792 (2280)
Q Consensus 713 ~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~ 792 (2280)
| ++..+++.+++|++|++..+|.++..+++... ....+++++|.+.+||+++++++++++.+.+ +...
T Consensus 260 f--~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~-----~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l-----~~~~ 327 (537)
T KOG1176|consen 260 F--DAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI-----VKKYDLSSLRSVLSGGAPLSPATLEKVKERL-----PNVT 327 (537)
T ss_pred C--CHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc-----cCcccCCccEEEEecCCCCCHHHHHHHHHhC-----CCce
Confidence 2 89999999999999999999999999886542 2347899999999999999999999999986 4578
Q ss_pred cccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCC
Q 037878 793 MAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGR 872 (2280)
Q Consensus 793 v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~ 872 (2280)
+.++||+||+++.++....... ...+++|+++++.++.|.++.+ ...++++.||||++|++++.|||||
T Consensus 328 v~q~YGmTE~~~~~~~~~~~~e---------~k~~svG~~~~g~~~~v~~e~g--~~l~~~~~GEI~vrg~~imkGY~~N 396 (537)
T KOG1176|consen 328 VIQGYGMTEAGGLITSNDWGPE---------RKPGSVGRLLPGVRVKVLDETG--VSLGPNQTGEICVRGPQVMKGYLKN 396 (537)
T ss_pred EEEeeccccccCceeecCCCcc---------CcccccCccccceEEEeeCCCC--CCCCCCCceEEEEECcccchhhcCC
Confidence 9999999999976665433221 2358899999988888888664 3447899999999999999999999
Q ss_pred chhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccc
Q 037878 873 EELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPE 951 (2280)
Q Consensus 873 p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~ 951 (2280)
|+.|+++|.+ +|||||||+|++| ||+|+|+||+||+||.+|++|+|.|||++|.+||+|.+ |||+++||
T Consensus 397 peaT~~~~~~-------~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~e---aaVvgipD 466 (537)
T KOG1176|consen 397 PEATKEAFDD-------DGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLE---AAVVGIPD 466 (537)
T ss_pred hHHHHhhccc-------CCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccE---EEEEcccc
Confidence 9999999974 3999999999997 99999999999999999999999999999999999986 99999999
Q ss_pred cccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHh
Q 037878 952 EVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030 (2280)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~ 1030 (2280)
+..|+. ..++|+. +++. ...+++++.++++++. ++.+. .++.+++||+|+||||.|+.|++.+
T Consensus 467 e~~Ge~---------p~A~VV~---k~g~~lte~di~~~v~k~l~~-y~~~~---~V~Fvd~lPKs~~GKi~R~~lr~~~ 530 (537)
T KOG1176|consen 467 EVWGET---------PAAFVVL---KKGSTLTEKDIIEYVRKKLPA-YKLPG---GVVFVDELPKTPNGKILRRKLRDIA 530 (537)
T ss_pred cccCCc---------ceEEEEe---cCCCcCCHHHHHHHHHhhCCh-hhccC---eEEEeccCCCCCcchHHHHHHHHHH
Confidence 987642 2333332 2233 3347888899998887 55443 3344599999999999999999997
Q ss_pred hcC
Q 037878 1031 VDG 1033 (2280)
Q Consensus 1031 ~~~ 1033 (2280)
.+.
T Consensus 531 ~~~ 533 (537)
T KOG1176|consen 531 KKL 533 (537)
T ss_pred Hhc
Confidence 653
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=624.14 Aligned_cols=502 Identities=30% Similarity=0.489 Sum_probs=399.2
Q ss_pred CCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 467 ELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 467 ~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
...++.+++++++.+. |+++|+.+.+.++ ++||+||+++++++|+.|++. |+++||+|+|+++|+++++++
T Consensus 9 ~~~~~~~~l~~~a~~~--~~~~a~~~~~~~~----~~Ty~el~~~~~~~A~~L~~~---~v~~gdrVail~~N~~e~~~~ 79 (534)
T COG0318 9 AELTLASLLERAARRN--PDRPALIFLGRGG----RLTYRELDRRANRLAAALQAL---GVKPGDRVAILLPNSPEFLIA 79 (534)
T ss_pred ccccHHHHHHHHHHhC--CCceEEEEcCCCc----eeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHH
Confidence 3567899999998874 8999998876432 599999999999999999998 899999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC--CCCCCcccccccccc-----cc
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS--WPNLPWLHTDSWVKN-----SK 619 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~ 619 (2280)
++||+++|++++|+++.+..++ +.+++++++++.++++........... .+....+........ ..
T Consensus 80 ~~a~~~~Gav~vpln~~~~~~~-------l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (534)
T COG0318 80 FLAALRAGAVAVPLNPRLTPRE-------LAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLE 152 (534)
T ss_pred HHHHHhcCEEEeecCcccCHHH-------HHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHH
Confidence 9999999999999999986665 889999999999999876322221110 011110000000000 00
Q ss_pred ccccc---cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC--CCCCcEEEEEcCchhhhhHHHH
Q 037878 620 NLLAE---NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK--STSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 620 ~~~~~---~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
..... ........+++|+|+|+|||||||.||||++||+|+..+.......+. ++++|++++++|++|++|+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~ 232 (534)
T COG0318 153 ALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVG 232 (534)
T ss_pred HHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHH
Confidence 00000 011111256899999999999999999999999999999988888888 8999999999999999999888
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCC-ccEEEEecCCCCH
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSS-MKFLMVAAEPVRQ 773 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~-Lr~l~~gGe~l~~ 773 (2280)
++.+++.|+++++.++..| ++..++..+.++++|++..+|.++..+++...... .++++ +|++++||+++++
T Consensus 233 ~~~~~~~G~~~v~~~~~~f--~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-----~~~~~~lr~~~~gg~~~~~ 305 (534)
T COG0318 233 LLAPLLGGGTLVLLSPEPF--DPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-----DDLSSSLRLVLSGGAPLPP 305 (534)
T ss_pred HHHHHHcCCEEEeCCCCCc--CHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----cccccceEEEEecCCcCCH
Confidence 8888999999999876555 89999999999999999999999988876544432 33444 9999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCC
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G 853 (2280)
++.++|.+.+. ...++++||+||++..++...... . ....+++|+|+|+++++|+|++++ .+.| |
T Consensus 306 ~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~-~-------~~~~~~~G~~~pg~~v~Ivd~~~~-~~~p-g 370 (534)
T COG0318 306 ELLERFEERFG-----PIAILEGYGLTETSPVVTINPPDD-L-------LAKPGSVGRPLPGVEVRIVDPDGG-EVLP-G 370 (534)
T ss_pred HHHHHHHHHhC-----CCceEEeecccccCceeecCCCch-h-------hhcCCcccccCCCcEEEEEeCCCC-ccCC-C
Confidence 99999999863 347999999999997766554332 1 112356699999999999998876 4444 9
Q ss_pred CeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHH
Q 037878 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTV 932 (2280)
Q Consensus 854 ~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L 932 (2280)
++|||+|+||+++.||||+|+.|++.|.+ ++||+|||+|+++ ||.++|+||.||+||.+|++|+|.|||.++
T Consensus 371 ~vGei~irgp~v~~GY~~~pe~t~~~f~~-------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l 443 (534)
T COG0318 371 EVGEIWVRGPNVMKGYWNRPEATAEAFDE-------DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVL 443 (534)
T ss_pred CceEEEEECchhhhhhcCChHHHHHhhcc-------CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHH
Confidence 99999999999999999999999998863 4899999999997 899999999999999999999999999999
Q ss_pred HhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC---CCCHHHHHHHHHHHHHhcCcceeEEEEec
Q 037878 933 ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK---PVDKDVIENIKTRVVEEHGVTVASVKLIK 1009 (2280)
Q Consensus 933 ~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~~~lv~ 1009 (2280)
.+||+|.+ |+|++++++.+++. +.+++ +..++. ...+++.++++++++. +++| ..++.
T Consensus 444 ~~~~~V~~---aavvgvpd~~~Ge~----------~~a~v--~~~~~~~~~~~~~~i~~~~~~~l~~-~~~P---~~v~~ 504 (534)
T COG0318 444 AEHPAVAE---AAVVGVPDERWGER----------VVAVV--VLKPGGDAELTAEELRAFLRKRLAL-YKVP---RIVVF 504 (534)
T ss_pred HhCCCcce---EEEEeCCCCccCce----------EEEEE--EEcCCCCCCCCHHHHHHHHHhhhhc-ccCC---eEEEE
Confidence 99998865 99999999876542 22222 223321 1346777777776654 4444 44455
Q ss_pred CCCccCCCCcccchHHHHHHhhc
Q 037878 1010 PRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1010 ~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+++||+|++||++|++|++.+.+
T Consensus 505 v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 505 VDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred eCCCCCCCchhhhHHHHHHHHHh
Confidence 59999999999999999998765
|
|
| >cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-62 Score=590.27 Aligned_cols=298 Identities=20% Similarity=0.274 Sum_probs=271.2
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||.+||||+|++|+|++++++++++++++|+ +|++|||++|||+++|++. |+.+|+|||||||+++ +|
T Consensus 3 ErIPER~vHAKG~ga~G~F~~t~d~~~~t~a~~f~~~g~~~pv~~RFS~~~g~~~s~D~~rd~RG~AiKf~~~-~g---- 77 (443)
T cd08155 3 ERIPERVVHARGSGAHGYFQVYESLSQYTKAKFLQDPGKKTPVFVRFSTVAGSRGSADTVRDVRGFAVKFYTE-EG---- 77 (443)
T ss_pred ccCccccccccccceEEEEEECCchhHHHhhhhccCCCceeeEEEEcccCCCCCCCCccCCCCCeEEEEEEcC-CC----
Confidence 68999999999999999999999999999999995 5799999999999999865 9999999999999987 34
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhccC--------------c---chhhhhhhcccCCCccccceeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRV--------------P---HIRDAVWKSLRLSDSYAEMHYYSN 1849 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~p~s~~~~~y~s~ 1849 (2280)
+|||+|||+||||++|+++|++|+++++++|++.+++. | +....+.+.+++|.||++|+|||+
T Consensus 78 ~~D~v~nn~PvFf~rd~~~Fp~~i~a~k~~P~t~~~dp~~~~~~~~dF~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gv 157 (443)
T cd08155 78 NYDLVGNNIPVFFIQDAIKFPDLIHAVKPEPHNEMPQAQSAHDTFWDFVSLQPESAHMVMWAMSDRAIPRSYRMMEGFGV 157 (443)
T ss_pred ceeeeeecCCceecCCHHHhhHHHhhccCCCCCCCCCcchhhhhHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccc
Confidence 49999999999999999999999999998886665543 3 334445555689999999999999
Q ss_pred eeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEE
Q 037878 1850 ICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929 (2280)
Q Consensus 1850 ~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ 1929 (2280)
|+|+|+|++|+.+||||+|+|.+|+++++.+|+.+.... ++|||.+||+++|++|++++|+|+||
T Consensus 158 htf~~vna~G~~~~Vk~~~~p~qG~~~l~~eeA~~~~~~---------------~~d~l~~dL~~~I~~G~~p~w~l~vQ 222 (443)
T cd08155 158 HTFRLVNAQGKSTFVKFHWKPVLGVHSLVWDEAQKIAGK---------------DPDFHRRDLWEAIESGDYPEWELGVQ 222 (443)
T ss_pred cceEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhCC---------------CCchHHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999998776433 45699999999999999999999999
Q ss_pred EeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchh
Q 037878 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRS 2007 (2280)
Q Consensus 1930 ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~ 2007 (2280)
+++++|...++|+++|+||+||++++|.+++|+|+||+++++ ++|||++|+|.++++||+||+ |||||+|.
T Consensus 223 v~~~~d~~~~~f~~~D~Tk~WP~~~~p~i~~G~l~Ln~np~n~f~e~eq~aF~P~~lvpGI~~S~-------DpmLq~R~ 295 (443)
T cd08155 223 LIDEEDEFKFDFDILDPTKLIPEELVPVQRVGKMVLNRNPDNFFAETEQVAFCPANVVPGIDFSN-------DPLLQGRL 295 (443)
T ss_pred EcCHHHHhcCCCCCCcCCCcCCccccceEEeEEEEEecCCcchhhhhhhhcccCcCCCCCccCCC-------Cccccccc
Confidence 999999999999999999999999999999999999999998 899999999999999999999 99999999
Q ss_pred hHHHhhhHhhc-CCCCchhHHHhhhcccccccCCCCCc
Q 037878 2008 LIYEICQHLRN-GEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2008 ~~Y~~s~~~R~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
++|.+|+++|+ |.+ ++|.+|| .|.|++
T Consensus 296 faY~ds~r~RlgG~N--------~~qlPvN--~P~~~v 323 (443)
T cd08155 296 FSYLDTQLSRLGGPN--------FHELPIN--RPVCPV 323 (443)
T ss_pred ccchHhhhccCCCCC--------hhhCccc--cccCCc
Confidence 99999999999 688 5676666 444544
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes. |
| >cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=590.86 Aligned_cols=298 Identities=20% Similarity=0.318 Sum_probs=270.8
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|++||||+|++|+|++++++++++++++|+ +|+++||++|||+++|++. |+.+|+|||||||+++ +|+
T Consensus 42 eripeR~vHAKG~ga~G~F~vt~d~~~~t~a~~f~~~g~~~Pv~vRFS~~~g~~~~~D~~rd~RGfAvKf~~~-eg~--- 117 (469)
T cd08154 42 ERIPERVVHARGAGAHGYFEAYGDISDYTRASFLQEPGKKTPVFVRFSTVIHGKGSPETLRDPRGFAVKFYTE-EGN--- 117 (469)
T ss_pred CCCccccccCceeeEEEEEEECCchhHHHhhhhccCCCccceeEEecccCCCCCCCCccCCCCCeeEEEEEcC-CCc---
Confidence 56899999999999999999999999999999995 5889999999999988855 9999999999999987 444
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhh----------ccCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHV----------KRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
|||+|||+|+||++|+++|++|+++++++|++.+ ..+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 118 -~Dlv~nn~PvFfird~~~Fp~~i~a~k~~P~t~~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~P~sy~~~~g~gvhtf~ 196 (469)
T cd08154 118 -WDLVGNNLPVFFIRDAIKFPDMIHALKPSPVTNIQDPNRIFDFFSHVPESTHMLTFLYSDWGTPASYRHMDGSGVHTYK 196 (469)
T ss_pred -eeeeeecCCccccCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcChHHHHHHHHHhcCCCCCCCcccCCccccceeE
Confidence 9999999999999999999999999998875544 3444 4455556666899999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+|+.+.... ++|||++||++||++|++++|+|+||++++
T Consensus 197 ~vn~~G~~~~VK~h~~p~~G~~~l~~eeA~~~~g~---------------~~d~l~~dL~~~I~~G~~p~w~l~vQv~~~ 261 (469)
T cd08154 197 WVNAEGKVVYVKYHWKPKQGVKNLTAEEAAEVQGK---------------NFNHATQDLYDAIAAGNYPEWELYVQIMDP 261 (469)
T ss_pred EEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhcC---------------CCcHHHHHHHHHHhcCCCceEEEEEEEcCH
Confidence 99999999999999999999999999998876432 467999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|...++|+++|+||.||++++|++++|+|+||+++++ ++|||++|+|.++++||++|+ |||||+|.++|.
T Consensus 262 ~D~~~~~f~~~D~Tk~WP~~~~p~i~vG~l~Ln~np~n~f~e~eq~aF~P~~lvpGI~~S~-------DpmLq~R~faY~ 334 (469)
T cd08154 262 KDLDKLDFDPLDDTKIWPEDQFPLKPVGKMTLNKNPDNFFAEVEQVAFSPGNLVPGIEPSD-------DKMLQGRLFSYS 334 (469)
T ss_pred HHhhcCCCCCCcCCcccCCcccceEEeEEEEEecCCcchhhhhhhhhccccCCCCCcCCCC-------Ccccccccccch
Confidence 99999999999999999999999999999999999998 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+|+++|+|.+ ++|.+|| .|.|+.
T Consensus 335 ds~r~Rlg~N--------~~qlPvN--~p~~~~ 357 (469)
T cd08154 335 DTQRYRLGPN--------YLQLPIN--APKAAV 357 (469)
T ss_pred hHhhccCCCC--------hhhCCCC--CCCCCC
Confidence 9999999988 4666665 555543
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes. |
| >PLN02609 catalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=590.67 Aligned_cols=298 Identities=21% Similarity=0.310 Sum_probs=272.9
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|++||||+|++|+|++++++++++++++|+ +|+++||++|||+++|++. |+.+|+|||||||+++ +|+
T Consensus 57 ErIpeR~vHAKG~ga~G~F~~t~d~s~~t~a~~f~~~g~~~pv~vRFS~~~G~~~s~D~~rd~RG~AiKf~~~-~g~--- 132 (492)
T PLN02609 57 ERIPERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTR-EGN--- 132 (492)
T ss_pred ccccccccccccceEEEEEEECCchhHHHhhhhccCCCceeeEEEEcccCCCCCCCCCcCCCCCeeEEEEEcC-CCc---
Confidence 78999999999999999999999999999999994 5789999999999999865 9999999999999987 344
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhh----------hccCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEH----------VKRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
|||+|||+|+||++|+++|++|+++.+++|.+. +..+| +....+++.+++|.||++|+|||+|+|+
T Consensus 133 -~D~v~nn~PvFf~rdp~~Fpd~i~a~k~~P~t~~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~P~syr~~~~~gvhtF~ 211 (492)
T PLN02609 133 -FDMVGNNFPVFFIRDGMKFPDMVHALKPNPKTHIQEPWRILDFLSHHPESLHMFTFLFDDRGIPQDYRHMEGFGVHTYK 211 (492)
T ss_pred -eeEeeecCceeecCCHHHhhHHHhhcCCCCCCCCCChhHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceE
Confidence 999999999999999999999999999887544 34455 4455666888999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+|+.+.... ++|||++||+++|++|+.++|+|+||++++
T Consensus 212 ~vn~~G~~~~Vk~h~~p~~G~~~l~~eeA~~~~g~---------------~~d~l~~DL~~~I~~G~~P~w~l~vQv~~~ 276 (492)
T PLN02609 212 LINKAGKAHYVKFHWKPTCGVKNLLDEEAVRVGGS---------------NHSHATQDLYDSIAAGNYPEWKLFIQTMDP 276 (492)
T ss_pred EECCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhCC---------------CCcHHHHHHHHHHhcCCCceeEEEEEEcCH
Confidence 99999999999999999999999999998877543 356999999999999998999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|...++|+++|+||.||++++|.+++|+|+||+++++ ++|||++|+|.++++||+||+ |||||+|.++|.
T Consensus 277 ~d~~~~~f~~~D~Tk~WP~~~~p~i~vG~l~Ln~np~n~f~e~eq~aF~P~~lvpGI~~S~-------DpmLq~R~faY~ 349 (492)
T PLN02609 277 EDEDKFDFDPLDVTKTWPEDILPLQPVGRLVLNRNIDNFFAENEQLAFCPAIVVPGIYYSD-------DKLLQTRIFAYA 349 (492)
T ss_pred HHHhcCCCCCCcCCceeCcccceeeEeEEEEEecCCcchhhhhhhhccccccCCCCccCCC-------Ccccccccccch
Confidence 99999999999999999999999999999999999998 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+|+++|+|.+ ++|++|| .|.|++
T Consensus 350 ds~~~Rlg~N--------~~qlPvN--~p~~~~ 372 (492)
T PLN02609 350 DTQRHRLGPN--------YLQLPVN--APKCAH 372 (492)
T ss_pred hHhhccCCCC--------hhhCccc--CCCCCc
Confidence 9999999998 5777766 444444
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=629.13 Aligned_cols=513 Identities=20% Similarity=0.217 Sum_probs=396.5
Q ss_pred HHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHH
Q 037878 472 DGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCM 551 (2280)
Q Consensus 472 ~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l 551 (2280)
.+++++++.+. .|+++|+++..+++...+++||+||.++++++|+.|++. |+++||+|+++++|++|+++++|||+
T Consensus 91 ~~~l~~~~~~~-~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~GdrV~i~~pn~~e~v~a~lA~~ 166 (666)
T PLN02654 91 YNCLDRNVEAG-NGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDV---GVKKGDAVVIYLPMLMELPIAMLACA 166 (666)
T ss_pred HHHHHHhhccC-CCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 45666655421 489999988654333347899999999999999999998 99999999999999999999999999
Q ss_pred HcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC------------C---CCCCC-cccccccc
Q 037878 552 RAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG------------S---WPNLP-WLHTDSWV 615 (2280)
Q Consensus 552 ~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~---~~~~~-~~~~~~~~ 615 (2280)
++|++++|+++..+.++ +..++++++++++|++.......+.. . ..... .+......
T Consensus 167 ~~Gav~vpv~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (666)
T PLN02654 167 RIGAVHSVVFAGFSAES-------LAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQL 239 (666)
T ss_pred HcCCEEEecCCCCCHHH-------HHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccc
Confidence 99999999999999888 88999999999999976543211000 0 00000 00000000
Q ss_pred c----cc----------cccccc--cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHH-HHHHHHHHcCCCCCcE
Q 037878 616 K----NS----------KNLLAE--NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIH-NVKLMRKRYKSTSKTV 678 (2280)
Q Consensus 616 ~----~~----------~~~~~~--~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~-~~~~~~~~~~~~~~d~ 678 (2280)
. .. .+.... .........++|++||+|||||||+||||+++|++++. ........++++++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~ 319 (666)
T PLN02654 240 AMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDV 319 (666)
T ss_pred cccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcE
Confidence 0 00 000000 00111224679999999999999999999999999764 4455666788999999
Q ss_pred EEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCC
Q 037878 679 LVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDL 758 (2280)
Q Consensus 679 ~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l 758 (2280)
+++.+|++|.++....++.+|+.|++++++++.....++..+++.++++++|++.++|++++.+.+.... .....++
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~~~~~~l 396 (666)
T PLN02654 320 YWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDE---YVTRHSR 396 (666)
T ss_pred EEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcc---ccccCCh
Confidence 9999999999998778899999999999987655456899999999999999999999999988764321 1223578
Q ss_pred CCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceE
Q 037878 759 SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDI 838 (2280)
Q Consensus 759 ~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v 838 (2280)
++||.++++||++++++.+++.+.++ ...+.+.+.||+||++...+....... ....+++|.|+||+++
T Consensus 397 ~~Lr~i~~~Ge~l~~~~~~~~~~~~g---~~~~~i~~~yg~TE~g~~~~~~~~~~~--------~~~~gs~G~p~~g~~v 465 (666)
T PLN02654 397 KSLRVLGSVGEPINPSAWRWFFNVVG---DSRCPISDTWWQTETGGFMITPLPGAW--------PQKPGSATFPFFGVQP 465 (666)
T ss_pred hheeEEEEecCCCCHHHHHHHHHHhC---CCCCceeccccccccCCeeeccCCCCC--------CCCCCccCCCCCCceE
Confidence 99999999999999999999888753 234679999999999865543221110 1234789999999999
Q ss_pred EEEcCCCCcccCCCCCeeEEEEcC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCe
Q 037878 839 RIVNPETSEEIGEPGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDL 915 (2280)
Q Consensus 839 ~Ivd~~~~~~~~p~G~~GEL~i~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~ 915 (2280)
+|+|+++. . ++.|+.|||+|++ |++++||||||+.++++|... .+|||+|||+|+++ ||.++|+||+||+
T Consensus 466 ~i~d~~g~-~-~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~-----~~g~~~TGD~~~~d~dG~l~i~GR~dd~ 538 (666)
T PLN02654 466 VIVDEKGK-E-IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKP-----FAGYYFSGDGCSRDKDGYYWLTGRVDDV 538 (666)
T ss_pred EEECCCCC-C-CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhc-----CCCEEEeCceEEECCCCcEEEeeeccCe
Confidence 99998763 3 4678899999999 789999999999998887531 24899999999997 9999999999999
Q ss_pred EEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 037878 916 IIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVV 995 (2280)
Q Consensus 916 IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~ 995 (2280)
||++|+||+|.|||++|.+||+|.+ ++|++++++..+ +.+.+++ ...++...++++.+.+++.+.
T Consensus 539 I~~~G~ri~p~EIE~~l~~~p~V~e---aaVvg~~d~~~g----------e~~~a~V--vl~~~~~~~~~l~~~l~~~~~ 603 (666)
T PLN02654 539 INVSGHRIGTAEVESALVSHPQCAE---AAVVGIEHEVKG----------QGIYAFV--TLVEGVPYSEELRKSLILTVR 603 (666)
T ss_pred EEeCCEEECHHHHHHHHHhCCCeee---EEEEeeEcCCCC----------eEEEEEE--EECCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999976 899998876432 1222222 234444444566677777777
Q ss_pred HhcCcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 996 EEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 996 ~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.++..++.|..++.+++||+|.|||++|++|++.+.
T Consensus 604 ~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~ 639 (666)
T PLN02654 604 NQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 639 (666)
T ss_pred HhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHc
Confidence 776666667677778999999999999999988764
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-58 Score=627.53 Aligned_cols=549 Identities=30% Similarity=0.502 Sum_probs=402.7
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCC---CceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEE---GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL 541 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~---g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~ 541 (2280)
.++..++.++++++++. .|+++|+.+.+.+ ....+.+||+||.++++++|+.|.+. +++||+|+++++|++
T Consensus 17 ~~~~~~l~~~l~~~a~~--~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~----~~~gd~V~i~~~n~~ 90 (631)
T PRK07769 17 FPPNTNLVRHVERWAKV--RGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV----TKPGDRVAILAPQNL 90 (631)
T ss_pred ccccCCHHHHHHHHHHh--CCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh----cCCCCEEEEEcCCCh
Confidence 34456899999888876 4889998875411 11236899999999999999999864 799999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeC-CCCCc--cccchhhHHHHHHHHhhcCCeEEEEccccchhhcc--CCCCC---CCcccccc
Q 037878 542 DFVDAFFGCMRAKVLPVPV-LPPDP--LQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV--GSWPN---LPWLHTDS 613 (2280)
Q Consensus 542 e~~va~LA~l~aGa~~vpl-d~~~p--~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~---~~~~~~~~ 613 (2280)
++++++|||+++|+++||+ ++..+ .++ +.++++++++++++++......+.. ...+. ...+..+.
T Consensus 91 e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (631)
T PRK07769 91 DYLIAFFGALYAGRIAVPLFDPAEPGHVGR-------LHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDA 163 (631)
T ss_pred HHHHHHHHHHHcCCEEEeeCCCCccchHHH-------HHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccc
Confidence 9999999999999999999 45544 233 8899999999999998654332211 00010 01111111
Q ss_pred ccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH
Q 037878 614 WVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
... ... .........++|+++|+|||||||.||||++||+++...+......+++.+++++++++|++|++|+..
T Consensus 164 ~~~----~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~ 238 (631)
T PRK07769 164 VPD----EVG-ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLIT 238 (631)
T ss_pred ccc----ccc-cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHH
Confidence 100 000 001112356799999999999999999999999999988888888888999999999999999999865
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcce---eeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCC
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRA---THSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~v---t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~ 770 (2280)
++.+++.|++++++.+..+..+|..+++.++++++ +++..+|.++..+..............++++||.+++||++
T Consensus 239 -~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~ 317 (631)
T PRK07769 239 -VLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEP 317 (631)
T ss_pred -HHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCC
Confidence 45566778888887765555689999999999886 67777777665554321111000012578999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCce--eec---------------CCCceeeccccCCC
Q 037878 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPI--ILD---------------WQGRVCCGYVDQND 833 (2280)
Q Consensus 771 l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~--~~~---------------~~g~~~~g~vG~p~ 833 (2280)
+++++.++|.+.+.+.|++...++|.||+||++.+++.......+. ..+ ..+....+++|+|.
T Consensus 318 l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~ 397 (631)
T PRK07769 318 VSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVG 397 (631)
T ss_pred CCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcC
Confidence 9999999999987655666667999999999987665432211110 000 01112346799999
Q ss_pred CCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhcc----------CCCCCceeecCcEEEEEC
Q 037878 834 PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQ----------NNRGRKYTRTGDLGRIID 903 (2280)
Q Consensus 834 pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~----------~~~~~~~yrTGDlgr~~d 903 (2280)
++.+++|+|++++. .+|.|+.|||+|+||+++.||||+|+.|+++|...+. ...+++||||||+|+++|
T Consensus 398 ~~~~~~ivd~~~g~-~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~d 476 (631)
T PRK07769 398 VSEWAVIVDPETAS-ELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFD 476 (631)
T ss_pred CCcEEEEEcCCCCc-CCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEEC
Confidence 99999999976554 4579999999999999999999999999999974211 012458999999999999
Q ss_pred CeEEEEecCCCeEEECCeeechHHHHHHHHh-ccCCcCCceeEEEecccccccccc-------ccc--cCCCCceEEEEE
Q 037878 904 GKFFITGRIKDLIIVAGRNVYSADVEKTVES-STEHIRPGCCAVIGVPEEVLSTKG-------ISV--SDGSDQVGLVVI 973 (2280)
Q Consensus 904 G~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~-~p~v~~~~~aaVv~~~~~~~~~~~-------~~~--~~~~~~~~~vv~ 973 (2280)
|+|+|+||+||+||++|+||+|.|||++|.+ ||.|. ...++|++++++.+++.. +.. +...+.+ +++
T Consensus 477 G~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~-~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~--~a~ 553 (631)
T PRK07769 477 GELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALR-TGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQL--VIV 553 (631)
T ss_pred CEEEEEcccccEEEECCeeeCHHHHHHHHHhcccccc-CCcEEEEEecccccccccccccccccccccCCCCccE--EEE
Confidence 9999999999999999999999999999996 78885 345889998885443221 101 1111222 223
Q ss_pred EEecCC--CCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCCCC
Q 037878 974 AEVRDG--KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLN 1036 (2280)
Q Consensus 974 ~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~ 1036 (2280)
++..++ ....+++.+++++++..+++.+...+.++..++||+|++|||+|++|+++|.++.+.
T Consensus 554 v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 618 (631)
T PRK07769 554 AERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGSLR 618 (631)
T ss_pred EEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCCCc
Confidence 333333 223468889999999876665444555555468999999999999999998776543
|
|
| >cd00328 catalase Catalase heme-binding enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=587.59 Aligned_cols=291 Identities=21% Similarity=0.302 Sum_probs=267.2
Q ss_pred eecccccccccccceeEEEEecCCCCCCcCcccCC-CceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCcc
Q 037878 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHP-GKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSSL 1787 (2280)
Q Consensus 1711 ~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~-g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~~ 1787 (2280)
+++||.+||||+|++|+|++++++++++++++|++ |++|||++||||++|.+. |+.+|+|||||||+++ +| +
T Consensus 1 riPER~~HAKG~ga~G~F~v~~d~~~~t~a~~f~~~g~~~pv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~-~g----~ 75 (433)
T cd00328 1 RIPERVVHARGAGAFGYFTAYGDWSDISAAAFFSAIGKKTPVFVRFSTVVGGAGSADTVRDPHGFATKFYTE-EG----N 75 (433)
T ss_pred CCCcccccCcccceEEEEEECCChhHHHhhhhccCCCceeeEEEecccCCCCCCCCccCCCCCeeEEEEecC-CC----c
Confidence 57999999999999999999999999999999965 999999999999988754 9999999999999986 33 4
Q ss_pred eeeecccccccccCChhhHHHHHhhccchhhhhhcc----------Cc---chhhhhhhcccCCCccccceeeeeeeEEE
Q 037878 1788 LDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKR----------VP---HIRDAVWKSLRLSDSYAEMHYYSNICRLF 1854 (2280)
Q Consensus 1788 ~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~~ 1854 (2280)
|||+|||+|+||++|+++|++|+++.+++|++.+++ +| +....+.+.+++|.||++|+|||+|+|+|
T Consensus 76 ~D~v~nn~PvFf~~d~~~F~~~i~a~k~~P~t~~~d~~~~~~f~~~~Pes~h~~~~~~s~r~~P~sy~~~~~~gvhtf~~ 155 (433)
T cd00328 76 FDLVGNNTPIFFIRDAIKFPDFIHAQKPNPQTALPDADRFWDFLSLRPESLHQVSFLFSDRGIPAAYRHMNGYGSHTFKL 155 (433)
T ss_pred eeEeeecCceeecCCHHHhhHhhhccCCCCCCCCCCHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCcccCCccccceEEE
Confidence 999999999999999999999999999888555443 44 44445566668999999999999999999
Q ss_pred EEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCC
Q 037878 1855 RFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIP 1934 (2280)
Q Consensus 1855 ~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~ 1934 (2280)
+|++|+.+||||||+|.+|+++++.+|+.+... +++|||++||++||++|+.++|+|+||+++++
T Consensus 156 vn~~G~~~~vk~~~~p~~G~~~l~~eea~~~~~---------------~~~d~l~~dL~~~i~~G~~P~w~l~vQv~~~~ 220 (433)
T cd00328 156 VNANGKVHYVKFHWKTDQGIANLVWEEAARLAG---------------EDPDYHRQDLFEAIEAGDYPSWELYIQVMTFN 220 (433)
T ss_pred EcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhc---------------CCCchhhhhHHHHHhCCCCceEEEEEEEcCHH
Confidence 999999999999999999999999998875532 35679999999999999988999999999999
Q ss_pred CccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHHh
Q 037878 1935 QDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEI 2012 (2280)
Q Consensus 1935 d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~ 2012 (2280)
|...++|+++|+||.||++++|++++|+|+||+++++ ++|||++|+|.++++||+||+ |||||+|.++|.+
T Consensus 221 d~~~~~f~~~D~Tk~WP~~~~p~i~vG~l~Ln~n~~n~f~e~eq~aF~P~~lvpGI~~S~-------DplLq~R~faY~d 293 (433)
T cd00328 221 DAEKFPFNPLDPTKVWPEELVPLIVVGKLVLNRNPLNFFAEVEQAAFDPGHIVPGVEFSE-------DPLLQGRLFSYAD 293 (433)
T ss_pred HHhcCCCCCCcCCcccCCcCcccEEeEEEEeecCCcchhhhhhhhccCCcCCCCCccCCC-------Ccccccccccchh
Confidence 9999999999999999999999999999999999988 899999999999999999999 9999999999999
Q ss_pred hhHhhcCCCCchhHHHhhhccccc
Q 037878 2013 CQHLRNGEPLPESWRIFLEQSDVK 2036 (2280)
Q Consensus 2013 s~~~R~~~~~~~~~~~~~~~~~~~ 2036 (2280)
|+++|+|.+ ++|.+||
T Consensus 294 s~~~R~g~N--------~~qlpvN 309 (433)
T cd00328 294 TQLYRLGPN--------FQQLPVN 309 (433)
T ss_pred hhhcCCCCC--------HhhCccc
Confidence 999999999 5777777
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Most catalases exist as tetramers of 65KD subunits containing a protoheme IX group buried deep inside the structure. In eukaryotic cells, catalases are located in peroxisomes. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-58 Score=623.56 Aligned_cols=517 Identities=17% Similarity=0.192 Sum_probs=385.8
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
...+++++++.....++++|+++..+++...+++||+||.++++++|+.|+++ |+++||+|+++++|++|+++++||
T Consensus 60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~GDrV~i~~~n~~e~~~~~lA 136 (647)
T PTZ00237 60 TCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNL---NISKNDNVLIYMANTLEPLIAMLS 136 (647)
T ss_pred HHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHH
Confidence 34567777654311378999988765443347899999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccc---------hhhccC-CCC--CC-Ccccc---c-
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYH---------SAVRVG-SWP--NL-PWLHT---D- 612 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~---------~~~~~~-~~~--~~-~~~~~---~- 612 (2280)
|+++|++++|+++..+.++ +.++++++++++++++.... +.+... ... .. ..+.. .
T Consensus 137 ~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 209 (647)
T PTZ00237 137 CARIGATHCVLFDGYSVKS-------LIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDI 209 (647)
T ss_pred HHHhCcEEEeeCCCCCHHH-------HHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCc
Confidence 9999999999999999887 88999999999999875211 000000 000 00 00000 0
Q ss_pred ----cc--------ccc---cccc-------ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHH-HHHHHHHHHH
Q 037878 613 ----SW--------VKN---SKNL-------LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGG-LIHNVKLMRK 669 (2280)
Q Consensus 613 ----~~--------~~~---~~~~-------~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~-l~~~~~~~~~ 669 (2280)
+. ... ..+. ............++|+++|+|||||||+||||+++|++ +.+.......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~ 289 (647)
T PTZ00237 210 TSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRS 289 (647)
T ss_pred ccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHH
Confidence 00 000 0000 00000112345679999999999999999999999999 5444444445
Q ss_pred HcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCcccccc--CHHHHHHHHhhcceeeecCcHHHHHHHHHHHh
Q 037878 670 RYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIK--NPLLWLETMSKYRATHSAGPNFAFELMVRRLE 747 (2280)
Q Consensus 670 ~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~--~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~ 747 (2280)
.+....++++++.+|++|+++. ..++.+|+.|+++++++...+.. .+..+++.++++++|++.++|++++.+.+...
T Consensus 290 ~~~~~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 368 (647)
T PTZ00237 290 IIEKDIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP 368 (647)
T ss_pred hcCCCCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCc
Confidence 5667788999999999998764 46889999999999887532211 26789999999999999999999998876432
Q ss_pred cccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeec
Q 037878 748 SSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCG 827 (2280)
Q Consensus 748 ~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g 827 (2280)
.........++++||.+++|||++++++.+++.+.+ ++.++|.||+||++..++..... .....+
T Consensus 369 ~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~------g~~i~~~yG~TE~~~~~~~~~~~---------~~~~~~ 433 (647)
T PTZ00237 369 EATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL------KIKSSRGYGQTEIGITYLYCYGH---------INIPYN 433 (647)
T ss_pred cccccccccCcchheEEEecCccCCHHHHHHHHHhc------CCCEEeeechHHhChhhhccCCC---------CCCCCC
Confidence 211111235789999999999999999999988764 46799999999998654332110 122347
Q ss_pred cccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCC---CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-C
Q 037878 828 YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP---SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-D 903 (2280)
Q Consensus 828 ~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp---~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-d 903 (2280)
++|+|+||++++|+|+++ . .++.|+.|||+|+|| +++.||||||+.|++.|.. .+|||+|||+|+++ |
T Consensus 434 s~G~p~~g~~~~i~d~~g-~-~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~------~~g~~~TGDlg~~d~d 505 (647)
T PTZ00237 434 ATGVPSIFIKPSILSEDG-K-ELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK------FPGYYNSGDLGFKDEN 505 (647)
T ss_pred CCccCcCCceEEEECCCC-C-CCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhC------CCCEEECCcEEEECCC
Confidence 899999999999999865 3 347899999999986 7899999999999987742 24799999999997 9
Q ss_pred CeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC
Q 037878 904 GKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD 983 (2280)
Q Consensus 904 G~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 983 (2280)
|+++|+||+||+||++|+||+|.|||++|.+||.|.+ |+|++++++..+ ....++++..+..++...+
T Consensus 506 G~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~e---aavvg~~~~~~g---------~~~~a~Vv~~~~~~~~~~~ 573 (647)
T PTZ00237 506 GYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLE---CCSIGIYDPDCY---------NVPIGLLVLKQDQSNQSID 573 (647)
T ss_pred CeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCcee---eEEEeeEcCCCC---------CEEEEEEEeccCccccCCC
Confidence 9999999999999999999999999999999999976 899998886433 1233333322111222222
Q ss_pred -HHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 984 -KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 984 -~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+++.+.+++.+..++.....|..++.+++||+|+||||+|+.|++.+..
T Consensus 574 ~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 574 LNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred HHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 4566667777666666666666677779999999999999999988643
|
|
| >cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=588.58 Aligned_cols=298 Identities=20% Similarity=0.308 Sum_probs=268.5
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccCC-CceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHP-GKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~-g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|++||||+|++|+|+|++++++++++++|+. |++|||++||||++|++. |+.+|+|||||||+++ +|
T Consensus 16 eripeR~vHAKG~ga~G~F~vt~d~s~~t~a~~f~~~gk~~pv~vRFSt~~g~~~~~D~~rd~RG~AiKf~t~-eg---- 90 (451)
T cd08157 16 ERIPERVVHAKGAGAYGEFEVTDDISDITSADMLQGVGKKTPCLVRFSTVGGEKGSADTVRDPRGFAVKFYTE-EG---- 90 (451)
T ss_pred CCCccccccCCcccEEEEEEECCChhHHHhhhhccCCCceeeEEEecccCCCCCCCCCcCCCcCeEEEEEEcC-CC----
Confidence 568999999999999999999999999999999965 999999999999999864 9999999999999986 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhh----------hccCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEH----------VKRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++.+++|++. +..+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 91 ~~DlV~nn~PvFfird~~~F~~~i~a~~~~p~~~~~d~~~~~df~~~~Pes~~~~~~l~s~~g~p~sy~~~~~~g~htf~ 170 (451)
T cd08157 91 NWDWVFNNTPVFFIRDPIKFPHFIHSQKRDPQTNLKDSTMFWDYLSQNPESIHQVMILFSDRGTPASYRSMNGYSGHTYK 170 (451)
T ss_pred ceeeeeecCcccccCCHHHHHHHHHhcccCCCCCCCChHHHHHHHhhChHHHHHHHHHhccCCCCCCcccCCccccceeE
Confidence 4999999999999999999999999999887443 34455 3444455567899999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||+|+|.+|+++++.+|+.+... ..+|||++||+++|++|+.++|+|+||++++
T Consensus 171 ~vn~~G~~~~vK~~~~P~~G~~~l~~~ea~~~~~---------------~~~d~l~~dL~~~i~~g~~p~w~l~vQl~~~ 235 (451)
T cd08157 171 WVNPDGSFKYVQFHLKSDQGPKFLTGEEAARLAG---------------SNPDYATKDLFEAIERGDYPSWTVYVQVMTP 235 (451)
T ss_pred EECCCCCEEEEEEEEEECCCcccCCHHHHHhhcC---------------CCCChhHhhHHHHHhcCCCceEEEEEEEeCH
Confidence 9999999999999999999999999888776521 1467999999999999998899999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|....+|+++|+||+|||+++|+++||+|+||+++++ ++|||++|+|||+++||+||+ |||||+|+++|.
T Consensus 236 ~d~~~~~f~i~D~Tk~WPe~~~P~~~vG~l~Ln~~~~~~~~e~eq~aF~P~~~vpGi~ps~-------DpiLq~R~~aY~ 308 (451)
T cd08157 236 EQAEKLRFNIFDLTKVWPHKDFPLRPVGKLTLNENPKNYFAEIEQAAFSPSHMVPGIEPSA-------DPVLQARLFSYP 308 (451)
T ss_pred HHHhhCCCCCCcCCcccCcccCccEEeEEEEecCCChhHHhHhhhhcccccccCCCccCCC-------CchhcccccchH
Confidence 99989999999999999999999999999999999988 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCC-CCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSG-CPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2044 (2280)
+|+++|+|.+ ++|.+|| .|- |++
T Consensus 309 ds~~~R~g~N--------~~qlPvN--~p~~~~~ 332 (451)
T cd08157 309 DAHRHRLGPN--------YQQLPVN--RPKTSPV 332 (451)
T ss_pred HHHHhccCCC--------hhhCCCC--CCCcCCC
Confidence 9999999998 5666666 444 443
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though. |
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-57 Score=616.07 Aligned_cols=514 Identities=20% Similarity=0.222 Sum_probs=387.6
Q ss_pred HHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHH
Q 037878 471 LDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGC 550 (2280)
Q Consensus 471 l~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~ 550 (2280)
..+++++++.. .|+++|+.+.+++....+++||+||.++++++|+.|++. |+++||+|+++++|++++++++|||
T Consensus 54 ~~~~l~~~~~~--~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~Gd~V~i~~~n~~e~v~~~lA~ 128 (628)
T TIGR02316 54 CHNALDRHLDE--RGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRAL---GVGRGDRVLIYMPMIAEAVFAMLAC 128 (628)
T ss_pred HHHHHHHHhCc--CCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 45667666654 489999988653322237899999999999999999998 9999999999999999999999999
Q ss_pred HHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh---------h----ccCCCCCCCcccccccccc
Q 037878 551 MRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA---------V----RVGSWPNLPWLHTDSWVKN 617 (2280)
Q Consensus 551 l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~ 617 (2280)
+++|++++|+++.++.++ +..+++++++++++++...... + ..........+..+.....
T Consensus 129 ~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 201 (628)
T TIGR02316 129 ARIGAIHSVVFGGFASHS-------LALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP 201 (628)
T ss_pred HHhCCEEEecCCCCCHHH-------HHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 999999999999999888 8899999999999997542110 0 0000000001111100000
Q ss_pred ----------cccccc---ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHH-HHHHHHHHHcCCCCCcEEEEEc
Q 037878 618 ----------SKNLLA---ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLI-HNVKLMRKRYKSTSKTVLVSWL 683 (2280)
Q Consensus 618 ----------~~~~~~---~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~-~~~~~~~~~~~~~~~d~~l~~~ 683 (2280)
...... ....+.....+++++||+|||||||.||||+++|++++ +........+++.++|++++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 281 (628)
T TIGR02316 202 MRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSAS 281 (628)
T ss_pred cCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 000000 00111122467999999999999999999999999975 4445556678889999999999
Q ss_pred CchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccE
Q 037878 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763 (2280)
Q Consensus 684 pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~ 763 (2280)
|++|+++....++.+|+.|++++++++.....++..+++.++++++|++..+|++++.+.+.... .....++++||.
T Consensus 282 ~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~~~~~~l~~lr~ 358 (628)
T TIGR02316 282 DVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA---WLRKHDLSSLHW 358 (628)
T ss_pred CCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc---ccccCCccceeE
Confidence 99999998778999999999999987654456899999999999999999999999887653211 122357899999
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcC
Q 037878 764 LMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNP 843 (2280)
Q Consensus 764 l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~ 843 (2280)
+++|||++++++.+++.+.+ +..+++.||+||++..++..... ... .....+++|+|+||++++|+|+
T Consensus 359 ~~~gGe~l~~~~~~~~~~~~------~~~~~~~yG~TE~~~~~~~~~~~-~~~-----~~~~~gs~G~p~~g~~v~i~d~ 426 (628)
T TIGR02316 359 LFLAGEPLDEPTAHWITDGL------GKPVIDNYWQTETGWPVLAIMPG-LDL-----KPVKLGSPGLPMYGYHLRVLDE 426 (628)
T ss_pred EEEecCCCCHHHHHHHHHHh------CCCEEecccccccCceeecCCCC-CCc-----CCCCCCCcccCcCCceEEEEEC
Confidence 99999999999998888764 45799999999998544332111 000 0123478899999999999998
Q ss_pred CCCcccCCCCCeeEEEEcCC---CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEEC
Q 037878 844 ETSEEIGEPGKEGEVWISSP---SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVA 919 (2280)
Q Consensus 844 ~~~~~~~p~G~~GEL~i~Gp---~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~ 919 (2280)
+++.. ++.|+.|||+|+|| +++.|||++++.+.+.|... .+++||+|||+|+++ ||+++|+||+|||||++
T Consensus 427 ~~g~~-~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~ 501 (628)
T TIGR02316 427 ATGRP-CGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSH----FKRPLYSSFDWGIRDEDGYTFILGRTDDVINVA 501 (628)
T ss_pred CCCCC-CCCCCcEEEEEecCCCccccccccCChHHHHHhhhhc----CCCCEEECCceEEEcCCCcEEEEEcCcceEEeC
Confidence 54444 47899999999998 67899999998877766432 235899999999997 99999999999999999
Q ss_pred CeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-----CCHHHHHHHHHHH
Q 037878 920 GRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-----VDKDVIENIKTRV 994 (2280)
Q Consensus 920 G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-----~~~~l~~~l~~~l 994 (2280)
|+||+|.|||++|.+||+|.+ |+|++++++..+ ..+.++++ ..++.. ....+.+.+++.+
T Consensus 502 G~rv~~~eIE~~l~~~p~V~e---a~Vvg~~d~~~g----------~~~~~~vv--~~~~~~~~~~~~~~~~~~~i~~~~ 566 (628)
T TIGR02316 502 GHRLGTREIEESVSSHPSVAE---VAVVGVHDELKG----------QVAVVFAI--LKESDSAGDAHDPHAVETGMMDCV 566 (628)
T ss_pred CEEeCHHHHHHHHHhCCCcce---EEEEeeecCCCC----------eEEEEEEE--EcCCcccccccchHHHHHHHHHHH
Confidence 999999999999999999975 899998876432 22222222 222211 1124455666666
Q ss_pred HHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 995 VEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 995 ~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.++++.++.|..++.+++||+|+|||++|+.|++.+.
T Consensus 567 ~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~ 603 (628)
T TIGR02316 567 VRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAE 603 (628)
T ss_pred HHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHc
Confidence 6666555666666777999999999999999988754
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-57 Score=613.49 Aligned_cols=548 Identities=30% Similarity=0.481 Sum_probs=401.3
Q ss_pred cCcccccCCCCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCC---ceeeeccHHHHHHHHHHHHHHHHhcCCCCCC
Q 037878 452 RNFKELEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEG---VAVNQSTYEELDANASRIAHKLLTSRKPVIK 528 (2280)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g---~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~ 528 (2280)
|....+.+-...++++..++.+++++++++ .|+++|+.+.+.++ ...+.+||+||.++++++|++|.+. ++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~----~~ 90 (612)
T PRK12476 17 RIEDCLDADGNIALPPGTTLISLIERNIAN--VGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV----AG 90 (612)
T ss_pred eccCcccccccccCCccCcHHHHHHHHHHh--CCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh----cC
Confidence 444445554545566677899999888766 48999998754211 1235899999999999999999864 89
Q ss_pred CCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeC-CCCCc--cccchhhHHHHHHHHhhcCCeEEEEccccchhhcc--CCC
Q 037878 529 PGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV-LPPDP--LQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV--GSW 603 (2280)
Q Consensus 529 ~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpl-d~~~p--~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~ 603 (2280)
+||+|+++++|++++++++|||+++|+++||+ ++..+ .++ +.++++++++++++++......+.. ...
T Consensus 91 ~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~ 163 (612)
T PRK12476 91 PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAER-------LDTALRDAEPTVVLTTTAAAEAVEGFLRNL 163 (612)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHH-------HHHHHHhCCCCEEEEcHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 56665 444 8899999999999997654332211 000
Q ss_pred CC---CCccccccccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC-CCCCcEE
Q 037878 604 PN---LPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK-STSKTVL 679 (2280)
Q Consensus 604 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~-~~~~d~~ 679 (2280)
+. ...+..++... . ...........++|+++|+|||||||.||||++||+++.+.+......++ +.+++++
T Consensus 164 ~~~~~~~~i~~~~~~~----~-~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~ 238 (612)
T PRK12476 164 PRLRRPRVIAIDAIPD----S-AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHG 238 (612)
T ss_pred ccccCceEEEeccccc----c-ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceE
Confidence 10 11111111110 0 00011112346789999999999999999999999999888777666677 7889999
Q ss_pred EEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHh--hcceeeecCcHHHHHHHHHHHhcccccccccC
Q 037878 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMS--KYRATHSAGPNFAFELMVRRLESSKDKVRSFD 757 (2280)
Q Consensus 680 l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~--~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~ 757 (2280)
++++|++|++++...++.++ .|+++++..+..+..+|..|++.+. ++++|++..+|.++..++....... .....+
T Consensus 239 l~~~Pl~h~~g~~~~~~~~~-~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~ 316 (612)
T PRK12476 239 VSWLPLYHDMGLSMIGFPAV-YGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA-EGDDID 316 (612)
T ss_pred EEeCCcccccchHHHHHHHh-cCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh-hhcCcc
Confidence 99999999999865444445 5555555555445558999999994 5889999888887766654311100 011246
Q ss_pred CCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCc---------------eeec--C
Q 037878 758 LSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKP---------------IILD--W 820 (2280)
Q Consensus 758 l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~---------------~~~~--~ 820 (2280)
++++| +++||+++++++.++|.+.+.+.|.+...++|.||+||++..++.......+ .... .
T Consensus 317 l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 395 (612)
T PRK12476 317 LSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADA 395 (612)
T ss_pred hhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCC
Confidence 88999 9999999999999999998765566667799999999998665432111000 0000 0
Q ss_pred CCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhcc----C-------CCC
Q 037878 821 QGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQ----N-------NRG 889 (2280)
Q Consensus 821 ~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~----~-------~~~ 889 (2280)
......+++|+|+||++++|+|++++. .+|.|+.|||+|+|++++.||||+|+.|+++|.+.+. + ..+
T Consensus 396 ~~~~~~~~~G~~~~g~~v~ivd~~~g~-~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~ 474 (612)
T PRK12476 396 PNAVAHVSCGQVARSQWAVIVDPDTGA-ELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADD 474 (612)
T ss_pred CCcceeEeCCCcCCCCEEEEEeCCCCc-CCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCC
Confidence 011124678999999999999987443 4579999999999999999999999999999964211 0 123
Q ss_pred CceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHh-ccCCcCCceeEEEeccccccccccccccCCCCce
Q 037878 890 RKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVES-STEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQV 968 (2280)
Q Consensus 890 ~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~-~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~ 968 (2280)
++||||||+|+++||.|+|+||+||+||++|+||+|.|||++|.+ ||.|.+ ..++|++++++. + +.+
T Consensus 475 ~~w~~TGDlg~~~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~-~~v~v~~~~~~~-~----------~~~ 542 (612)
T PRK12476 475 GTWLRTGDLGVYLDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRR-GYVTAFTVPAED-N----------ERL 542 (612)
T ss_pred CCeeeccccceeECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccC-CcEEEEEecCCC-c----------ceE
Confidence 579999999998999999999999999999999999999999985 798853 336667766542 1 222
Q ss_pred EEEEEEEecCCC--CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCCC
Q 037878 969 GLVVIAEVRDGK--PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTL 1035 (2280)
Q Consensus 969 ~~vv~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~ 1035 (2280)
+++++..++. ...+++.+.+++++.+.++++...+.++..++||+|++|||||++|++++.++.+
T Consensus 543 --~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~~ 609 (612)
T PRK12476 543 --VIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGRL 609 (612)
T ss_pred --EEEEEecCCcccccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcCCC
Confidence 2222333332 2336788899999998787655566666666899999999999999999877754
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-57 Score=614.66 Aligned_cols=513 Identities=22% Similarity=0.254 Sum_probs=395.0
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
...+.++++++. +|+++|+.+.+++....+++||+||.++++++|+.|++. |+++||+|+++++|++++++++||
T Consensus 58 ~~~~~l~~~~~~--~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~~~~~lA 132 (625)
T TIGR02188 58 VSYNCVDRHLEA--RPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSL---GVKKGDRVAIYMPMIPEAAIAMLA 132 (625)
T ss_pred HHHHHHHHhhcc--CCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHH
Confidence 345667666654 489999998765333357899999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh---------hcc--CCCC-CCC-cccccc---
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA---------VRV--GSWP-NLP-WLHTDS--- 613 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~---------~~~--~~~~-~~~-~~~~~~--- 613 (2280)
|+++|++++|+++..+.++ +.+++++++++++++++..... +.. ...+ .+. .+....
T Consensus 133 ~~~~Gav~v~i~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (625)
T TIGR02188 133 CARIGAIHSVVFGGFSAEA-------LADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGN 205 (625)
T ss_pred HHHhCCEEeccCCCCCHHH-------HHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCC
Confidence 9999999999999999888 8899999999999997643210 000 0001 010 000000
Q ss_pred ---c-------cccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHH-HHHHHcCCCCCcEEEEE
Q 037878 614 ---W-------VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK-LMRKRYKSTSKTVLVSW 682 (2280)
Q Consensus 614 ---~-------~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~-~~~~~~~~~~~d~~l~~ 682 (2280)
+ ....... ...........++|++||+|||||||+||||+++|++++.... .....+++.++|++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~ 284 (625)
T TIGR02188 206 PVPWVEGRDVWWHDLMAK-ASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCT 284 (625)
T ss_pred CcCccccccccHHHHHhh-cCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEEC
Confidence 0 0000000 0011122345678999999999999999999999999765443 34556788899999999
Q ss_pred cCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCcc
Q 037878 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMK 762 (2280)
Q Consensus 683 ~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr 762 (2280)
+|++|.++....++.+|..|++++++++.....+|..+++.++++++|++.++|++++.+.+..... ....++++||
T Consensus 285 ~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~~l~~lr 361 (625)
T TIGR02188 285 ADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW---VKKHDLSSLR 361 (625)
T ss_pred CCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---cccCCcccee
Confidence 9999999877778999999999999875444458999999999999999999999998887643221 1235688999
Q ss_pred EEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEc
Q 037878 763 FLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN 842 (2280)
Q Consensus 763 ~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd 842 (2280)
.+++|||++++++.+++.+.++ ..++.++|.||+||++..++....... ....+++|+|++|++++|+|
T Consensus 362 ~i~~~G~~l~~~~~~~~~~~~~---~~~~~i~~~yG~TE~~~~~~~~~~~~~--------~~~~~~~G~p~~g~~~~i~d 430 (625)
T TIGR02188 362 LLGSVGEPINPEAWMWYYKVVG---KERCPIVDTWWQTETGGIMITPLPGAT--------PTKPGSATLPFFGIEPAVVD 430 (625)
T ss_pred EEEEecCCCCHHHHHHHHHHcC---CCCCceEecccccccCCceeecCCCCC--------CcCCCcccCCcCCceEEEEC
Confidence 9999999999999999988753 235789999999999876543321111 12347799999999999999
Q ss_pred CCCCcccCC-CCCeeEEEEcC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE
Q 037878 843 PETSEEIGE-PGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV 918 (2280)
Q Consensus 843 ~~~~~~~~p-~G~~GEL~i~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi 918 (2280)
+++ ..++ +|+.|||+|+| |++++|||++|+.+.+.|.. ..++||+|||+|+++ ||.++|+||+||+||+
T Consensus 431 ~~g--~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~-----~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~ 503 (625)
T TIGR02188 431 EEG--NPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFS-----PFPGYYFTGDGARRDKDGYIWITGRVDDVINV 503 (625)
T ss_pred CCC--CCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhc-----cCCCEEECCceEEEcCCCcEEEEecccCEEEe
Confidence 765 3346 89999999999 68999999999988887753 124799999999997 9999999999999999
Q ss_pred CCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhc
Q 037878 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEH 998 (2280)
Q Consensus 919 ~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~ 998 (2280)
+|+||+|.|||++|.+||+|.+ |+|++++++..+ +.+.+++ ...++.....++.+.+++.+.+++
T Consensus 504 ~G~ri~p~eIE~~l~~~p~V~e---~~vvg~~~~~~g----------~~~~a~v--v~~~~~~~~~~~~~~l~~~~~~~l 568 (625)
T TIGR02188 504 SGHRLGTAEIESALVSHPAVAE---AAVVGIPDDIKG----------QAIYAFV--TLKDGYEPDDELRKELRKHVRKEI 568 (625)
T ss_pred CCEEECHHHHHHHHHhCCCcce---EEEEeeEcCCCC----------eEEEEEE--EeCCCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999975 899998876432 2222222 233444344455667777777766
Q ss_pred CcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 999 GVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 999 ~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
...+.|..++.+++||+|+|||++|+.|++.+.
T Consensus 569 ~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~ 601 (625)
T TIGR02188 569 GPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAA 601 (625)
T ss_pred CCCccCcEEEECCCCCCCCCccchHHHHHHHHc
Confidence 666667777778999999999999999988754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=613.67 Aligned_cols=511 Identities=20% Similarity=0.252 Sum_probs=390.9
Q ss_pred HHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHH
Q 037878 472 DGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCM 551 (2280)
Q Consensus 472 ~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l 551 (2280)
.+.+++.+++ .|+++|+++.++++...+++||+||+++++++|+.|+++ |+++||+|+++++|++++++++|||+
T Consensus 70 ~~~l~~~~~~--~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~~~~~lA~~ 144 (637)
T PRK00174 70 YNCLDRHLKT--RGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSL---GVKKGDRVAIYMPMIPEAAVAMLACA 144 (637)
T ss_pred HHHHHHhhcc--CCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4566666654 489999998765433457899999999999999999998 99999999999999999999999999
Q ss_pred HcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh---------hcc--CCCCCCCccc-ccc------
Q 037878 552 RAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA---------VRV--GSWPNLPWLH-TDS------ 613 (2280)
Q Consensus 552 ~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~---------~~~--~~~~~~~~~~-~~~------ 613 (2280)
++|++++|+++..+.++ +.+++++++++++++++..... +.. ...+....+. ...
T Consensus 145 ~~Gav~v~l~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (637)
T PRK00174 145 RIGAVHSVVFGGFSAEA-------LADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD 217 (637)
T ss_pred HcCCEEEecCCCCCHHH-------HHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC
Confidence 99999999999999888 8899999999999987543210 000 0001110000 000
Q ss_pred c-------cccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHH-HHHHHcCCCCCcEEEEEcCc
Q 037878 614 W-------VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK-LMRKRYKSTSKTVLVSWLPQ 685 (2280)
Q Consensus 614 ~-------~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~-~~~~~~~~~~~d~~l~~~pl 685 (2280)
+ ...... ............++|++||+|||||||+||||+++|++++.... .....+++.++|++++.+|+
T Consensus 218 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 296 (637)
T PRK00174 218 WVEGRDLWWHELVA-GASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADV 296 (637)
T ss_pred cCCCCcccHHHHHh-hcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCc
Confidence 0 000000 00011112335678999999999999999999999999865543 34455788899999999999
Q ss_pred hhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEE
Q 037878 686 YHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLM 765 (2280)
Q Consensus 686 ~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~ 765 (2280)
+|.++....++.+|..|+++++++......++..+++.++++++|++.++|++++.+.+..... ....++++||.++
T Consensus 297 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~i~ 373 (637)
T PRK00174 297 GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH---PKKYDLSSLRLLG 373 (637)
T ss_pred hHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc---cccCCccceeEEE
Confidence 9999987789999999999999865433458999999999999999999999998887643221 1225688999999
Q ss_pred EecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCC
Q 037878 766 VAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPET 845 (2280)
Q Consensus 766 ~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~ 845 (2280)
+|||++++++.+++.+.++ ..++.++|.||+||++..++....... ....+++|+|++|++++|+|+++
T Consensus 374 ~~Ge~l~~~~~~~~~~~~~---~~~~~i~~~YG~TE~~~~~~~~~~~~~--------~~~~~~vG~p~~g~~~~i~d~~g 442 (637)
T PRK00174 374 SVGEPINPEAWEWYYKVVG---GERCPIVDTWWQTETGGIMITPLPGAT--------PLKPGSATRPLPGIQPAVVDEEG 442 (637)
T ss_pred EeCCCCCHHHHHHHHHHhC---CCCCceEecccccccCCceEecCCCCC--------CcCCCcccCCCCCceEEEECCCC
Confidence 9999999999998887753 234789999999999876543221110 11236789999999999999875
Q ss_pred CcccCCCCCeeEEEEcC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCee
Q 037878 846 SEEIGEPGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRN 922 (2280)
Q Consensus 846 ~~~~~p~G~~GEL~i~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~r 922 (2280)
..+|.|+.|||+|+| |++++||||+|+.+.+.|.. ..+|||+|||+|+++ ||.++|+||+||+||++|+|
T Consensus 443 --~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~-----~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~ 515 (637)
T PRK00174 443 --NPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFS-----TFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHR 515 (637)
T ss_pred --CCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhc-----CCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEE
Confidence 345789999999999 69999999999988877642 235799999999997 99999999999999999999
Q ss_pred echHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcce
Q 037878 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTV 1002 (2280)
Q Consensus 923 I~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 1002 (2280)
|+|.|||++|.+||+|.+ |+|++.+++..+ ...++++ ...++...+.++.+.+++.+.++++..+
T Consensus 516 v~p~eIE~~l~~~~~V~~---~~Vvg~~~~~~g---------~~~~a~v---v~~~~~~~~~~~~~~l~~~l~~~l~~~~ 580 (637)
T PRK00174 516 LGTAEIESALVAHPKVAE---AAVVGRPDDIKG---------QGIYAFV---TLKGGEEPSDELRKELRNWVRKEIGPIA 580 (637)
T ss_pred ECHHHHHHHHHhCCCcce---EEEEeeEcCCCC---------eEEEEEE---EECCCCCCCHHHHHHHHHHHHhhcCCcc
Confidence 999999999999999975 889988775432 1122222 2333333334455666666666666556
Q ss_pred eEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 1003 ASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 1003 ~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.|..++.+++||+|+|||++|++|++...
T Consensus 581 ~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 609 (637)
T PRK00174 581 KPDVIQFAPGLPKTRSGKIMRRILRKIAE 609 (637)
T ss_pred CCCEEEEcCCCCCCCCcchHHHHHHHHHc
Confidence 66667777999999999999999888754
|
|
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=603.27 Aligned_cols=298 Identities=20% Similarity=0.300 Sum_probs=271.3
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||.+||||.|++|+|++++++++++++.+|+ +|+++||++|||+++|+++ |+.+|+||||+|||++ +|+
T Consensus 117 EriPER~vHAkG~~a~G~F~~t~~~s~~t~A~~f~~~g~~tPv~~RFStv~G~~gs~Dt~rd~RGfAvKFyt~-eGn--- 192 (752)
T PRK11249 117 ERIPERIVHARGSAAHGYFQPYKSLSDITKAAFLQDPGKITPVFVRFSTVQGPRGSADTVRDIRGFATKFYTE-EGN--- 192 (752)
T ss_pred ccCchhheecccceEEEEEEECccHHHhhhcccccCCCceeeEEEecccCCCCCCCCCcCCCCCceEEEEEcC-CCc---
Confidence 78999999999999999999999999999999995 6999999999999999977 9999999999999998 555
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhcc--------------Cc---chhhhhhhcccCCCccccceeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKR--------------VP---HIRDAVWKSLRLSDSYAEMHYYSN 1849 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~p~s~~~~~y~s~ 1849 (2280)
||||+||.||||++|+++|++|+|+.+++|+..++. +| |....+.+.+++|.||++|+|||+
T Consensus 193 -~Dlvgnn~PvFfi~d~~kFpd~iha~k~~P~~~~~~~~~~~~~~~dF~s~~Pes~h~~~~~~s~r~~P~s~r~~~gfgv 271 (752)
T PRK11249 193 -FDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGI 271 (752)
T ss_pred -cceeeecCcceecCCHHHhhHHHhhcCCCCCccCcccCCChHHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccc
Confidence 999999999999999999999999999988775554 22 334444555589999999999999
Q ss_pred eeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEE
Q 037878 1850 ICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929 (2280)
Q Consensus 1850 ~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ 1929 (2280)
|+|+|+|++|+.+||||||+|.+|+++++++|+.+.... ++||+++||+++|++|++++|+|+||
T Consensus 272 htF~~vna~G~~~~VKfh~kP~~G~~~l~~~Ea~~~~~~---------------dpDflr~DL~eaIe~G~~P~WeL~VQ 336 (752)
T PRK11249 272 HTFRLINAEGKATFVRFHWKPVAGKASLVWDEAQKLTGR---------------DPDFHRRDLWEAIEAGDYPEYELGVQ 336 (752)
T ss_pred cceEEEcCCCCEEEEEEEEEECCccccCCHHHHHHhcCC---------------CccHHHHHHHHHHHcCCCceEEEEEE
Confidence 999999999999999999999999999999988876432 46799999999999999889999999
Q ss_pred EeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchh
Q 037878 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRS 2007 (2280)
Q Consensus 1930 ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~ 2007 (2280)
+++++|.++++|+++|+||.|||+++|+++||||+||++++| ++|||++|+|.|+++||++|+ |||||+|.
T Consensus 337 l~~~~d~~~~~f~i~D~TK~WPe~~~P~~~VGkLtLnrn~~n~fae~eqvaF~P~~lvpGI~~S~-------DplLq~R~ 409 (752)
T PRK11249 337 LIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAETEQVAFHPGHIVPGIDFTN-------DPLLQGRL 409 (752)
T ss_pred EcChHHhccCCCCCCcCCccCCcccCcceEeEEEEecCCCCcchhhhheeeccCcCCCCCccCCC-------Cccccccc
Confidence 999999999999999999999999999999999999999999 899999999999999999999 99999999
Q ss_pred hHHHhhhHhhcC-CCCchhHHHhhhcccccccCCCCCc
Q 037878 2008 LIYEICQHLRNG-EPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2008 ~~Y~~s~~~R~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
++|.+||++|+| .++ +|++ ||.|.||+
T Consensus 410 fsY~dtq~~Rlgg~N~--------~qlp--vN~p~~~~ 437 (752)
T PRK11249 410 FSYTDTQISRLGGPNF--------HEIP--INRPTCPY 437 (752)
T ss_pred ccchHHhhccCCCCch--------hhcc--cccccCCc
Confidence 999999999998 663 4444 44556655
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=599.17 Aligned_cols=494 Identities=16% Similarity=0.222 Sum_probs=376.5
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.+.+.+++. |+++|+... +. +++||+||.++++++|+.|.+. +||+|+++++|++++++++
T Consensus 18 ~~~~~~~~~~~~~~~--p~~~a~~~~--~~---~~~Ty~el~~~~~~lA~~L~~~------~gd~Val~~~n~~e~~~~~ 84 (539)
T PRK06334 18 GKTVLESFLKLCSEM--TTATVCWDE--QL---GKLSYNQVRKAVIALATKVSKY------PDQHIGIMMPASAGAYIAY 84 (539)
T ss_pred CCcHHHHHHHHHHhC--CCceEEEeC--CC---CcccHHHHHHHHHHHHHHHhhc------cCCeEEEEcCCchHHHHHH
Confidence 467788888887774 788887532 21 4799999999999999999643 8999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCC--C--CCcccccccc------cc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWP--N--LPWLHTDSWV------KN 617 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~--~--~~~~~~~~~~------~~ 617 (2280)
|||+++|+++||+++..+.++ +.++++++++++++++.+....+...... . ...+..++.. ..
T Consensus 85 lA~~~~G~v~vpl~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 157 (539)
T PRK06334 85 FATLLSGKIPVMINWSQGLRE-------VTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEK 157 (539)
T ss_pred HHHHhcCCeeEecCcccchHH-------HHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHh
Confidence 999999999999999999888 88999999999999986544332211000 0 0011111000 00
Q ss_pred cc-c---ccccc----ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhh
Q 037878 618 SK-N---LLAEN----VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDM 689 (2280)
Q Consensus 618 ~~-~---~~~~~----~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 689 (2280)
.. . ..... ........++|+++|+|||||||.||||++||+++..........++.+++|++++++|++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 237 (539)
T PRK06334 158 CRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAY 237 (539)
T ss_pred hhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhh
Confidence 00 0 00000 0011245679999999999999999999999999998888888888899999999999999999
Q ss_pred hHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecC
Q 037878 690 GLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAE 769 (2280)
Q Consensus 690 gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe 769 (2280)
++...++.++..|+++++... . .+|..+++.++++++|++.++|+++..+++..... ..++++||.+++||+
T Consensus 238 g~~~~~~~~l~~G~~vv~~~~-~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~~~~lr~i~~gG~ 309 (539)
T PRK06334 238 GFNSCTLFPLLSGVPVVFAYN-P--LYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ-----ESCLPSLRFVVIGGD 309 (539)
T ss_pred hhHHHHHHHHHcCCeEEEecC-C--CCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc-----ccccccccEEEECCc
Confidence 987778899999999887542 2 38999999999999999999999999887654332 246789999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCccc
Q 037878 770 PVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849 (2280)
Q Consensus 770 ~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~ 849 (2280)
++++++.+++.+.+ +++.++|.||+||++.+++...... ....+++|+|++|++++|+|++++. .
T Consensus 310 ~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~vG~p~~g~~v~i~d~~~~~-~ 374 (539)
T PRK06334 310 AFKDSLYQEALKTF-----PHIQLRQGYGTTECSPVITINTVNS---------PKHESCVGMPIRGMDVLIVSEETKV-P 374 (539)
T ss_pred cCCHHHHHHHHHHC-----CCCeEEecccccccCceEEeccCCC---------CCCCCcCceecCCCEEEEEcCCCCc-c
Confidence 99999999998875 4678999999999987766432111 1113568999999999999976554 4
Q ss_pred CCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHH
Q 037878 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADV 928 (2280)
Q Consensus 850 ~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EI 928 (2280)
+|+|+.|||+|+|++++.||||+|+.++ |.. .++++||+|||+|+++ ||.++|+||+||+||++|+||+|.||
T Consensus 375 ~~~g~~Gel~v~g~~~~~GY~~~~~~~~--~~~----~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eI 448 (539)
T PRK06334 375 VSSGETGLVLTRGTSLFSGYLGEDFGQG--FVE----LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEAL 448 (539)
T ss_pred CCCCceEEEEEecCcccccccCCccccc--cee----eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHH
Confidence 5799999999999999999999998653 321 1356899999999997 99999999999999999999999999
Q ss_pred HHHHHhccCCcCCc---eeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEE
Q 037878 929 EKTVESSTEHIRPG---CCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASV 1005 (2280)
Q Consensus 929 E~~L~~~p~v~~~~---~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 1005 (2280)
|++|.+||+|.+.. .++|++++++. ..++++.... ...+++.+.++++....++.|.
T Consensus 449 E~~l~~~~~v~~~~~~~~~~v~~~~~~~--------------~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~P~--- 508 (539)
T PRK06334 449 ESILMEGFGQNAADHAGPLVVCGLPGEK--------------VRLCLFTTFP---TSISEVNDILKNSKTSSILKIS--- 508 (539)
T ss_pred HHHHHHccCCccccccCceEEEcCCCCc--------------eEEEEEEecc---CChHHHHHHHHhcCCcccccch---
Confidence 99999999997522 26677765421 1222222211 1234555666554222344443
Q ss_pred EEecCCCccCCCCcccchHHHHHHh
Q 037878 1006 KLIKPRTMSKTTSGKIKRFECLKQF 1030 (2280)
Q Consensus 1006 ~lv~~~~lP~t~sGKvdR~~L~~~~ 1030 (2280)
.+..+++||+|+||||||++|++..
T Consensus 509 ~i~~v~~lP~t~~GKi~r~~L~~~~ 533 (539)
T PRK06334 509 YHHQVESIPMLGTGKPDYCSLNALA 533 (539)
T ss_pred heeeecccccccCCcccHHHHHHHH
Confidence 3445599999999999999998764
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-56 Score=592.62 Aligned_cols=511 Identities=27% Similarity=0.391 Sum_probs=375.6
Q ss_pred HHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHH
Q 037878 471 LDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGC 550 (2280)
Q Consensus 471 l~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~ 550 (2280)
+.+.++.++++. |+++|+.+.+ +..++++||+||.++++++|+.|.++ ++||+|+++++|++++++++|||
T Consensus 4 ~~~~l~~~~~~~--~~~~a~~~~~--~~~~~~~ty~el~~~~~~lA~~L~~~-----~~g~~V~l~~~~~~e~~~~~la~ 74 (525)
T PRK05851 4 LAAALSDAMTAS--GRDLVVLDRE--SGLWRRHPWPEVHGRAENVAARLLDR-----DRPGAVGLVGEPTVELVAAIQGA 74 (525)
T ss_pred HHHHHHHHhcCC--CCceEEeCCC--CCcceeecHHHHHHHHHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHH
Confidence 677888888774 8899886543 22358999999999999999999764 68999999999999999999999
Q ss_pred HHcCCeEEeCCCCCc-cccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccccccccc
Q 037878 551 MRAKVLPVPVLPPDP-LQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCF 629 (2280)
Q Consensus 551 l~aGa~~vpld~~~p-~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (2280)
+++|++++ +++... .........++..+++++++++++++......+.... ..+ ...++...... ......
T Consensus 75 ~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~---~~~~~~~~~~~---~~~~~~ 146 (525)
T PRK05851 75 WLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD-SSV---TVHDLATAAHT---NRSASL 146 (525)
T ss_pred HHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh-ccc---ccccccccccc---cccccC
Confidence 99999865 443211 1101112223456788999999999765433222110 011 11111000000 000011
Q ss_pred CCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCC-CCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST-SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 630 ~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
....++|++||+|||||||.||||++||+++.+.+......+++. ++|++++++|++|++++. .++.+++.|+++++.
T Consensus 147 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~ 225 (525)
T PRK05851 147 TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA-FLLTAALAGAPLWLA 225 (525)
T ss_pred CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH-HHHHHHHcCCeEEEc
Confidence 234678999999999999999999999999999999888888888 899999999999999985 678899999999987
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
++..+..+|..+++.++++++|++..+|.++..+.+.... ....++++||.+++||+++++++.++|.+.+..+|+
T Consensus 226 ~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~----~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~ 301 (525)
T PRK05851 226 PTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR----VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGF 301 (525)
T ss_pred CHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc----ccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCC
Confidence 6545555788999999999999987777766655432211 112467899999999999999999999887655666
Q ss_pred CCcccccccCccccccceecccCCC-Cce-ee---cCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCC
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQG-KPI-IL---DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP 863 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~-~~~-~~---~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp 863 (2280)
+...++|.||+||++..++...... ... .. +.......+++|+|+||++++|+|+++. ..+|.|+.|||+|+|+
T Consensus 302 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~-~~~~~g~~GEl~v~g~ 380 (525)
T PRK05851 302 DAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGA-AGVAGREIGEIEIRGA 380 (525)
T ss_pred ChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCC-ccCCCCCeEEEEEecC
Confidence 6667999999999987655432110 000 00 0001123467999999999999998764 3357899999999999
Q ss_pred CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCce
Q 037878 864 SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC 943 (2280)
Q Consensus 864 ~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~ 943 (2280)
+++.|||++|+.+ .++||+|||+|++++|.|+|+||+||+||++|+||+|.|||++|.+||+|.+
T Consensus 381 ~~~~GY~~~~~~~------------~~~~~~TGDl~~~~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~--- 445 (525)
T PRK05851 381 SMMSGYLGQAPID------------PDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVRE--- 445 (525)
T ss_pred chhhccccCCccC------------CCCceeccceEEEECCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCccc---
Confidence 9999999998642 1479999999999999999999999999999999999999999999999976
Q ss_pred eEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhc-CcceeEEEEecCCCccCCCCcccc
Q 037878 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEH-GVTVASVKLIKPRTMSKTTSGKIK 1022 (2280)
Q Consensus 944 aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~lv~~~~lP~t~sGKvd 1022 (2280)
|+|++++++..+ ....+++..... + ...+++.+.+++++..++ ++|. .+.++..++||+|++||||
T Consensus 446 ~~vv~~~~~~~~----------~~~~~~v~~~~~-~-~~~~~~~~~~~~~l~~~l~~~P~-~~~~v~~~~lP~t~~GKi~ 512 (525)
T PRK05851 446 GAVVAVGTGEGS----------ARPGLVIAAEFR-G-PDEAGARSEVVQRVASECGVVPS-DVVFVAPGSLPRTSSGKLR 512 (525)
T ss_pred ceEEEEEecCCC----------CceeEEEEEEec-C-cchHHHHHHHHHHHHHHhCCCcc-EEEEECCCCcCcCcchHHH
Confidence 788887765322 223333332211 1 123466788888888753 4443 2334333489999999999
Q ss_pred hHHHHHHhhc
Q 037878 1023 RFECLKQFVD 1032 (2280)
Q Consensus 1023 R~~L~~~~~~ 1032 (2280)
|++|++.+.+
T Consensus 513 r~~L~~~~~~ 522 (525)
T PRK05851 513 RLAVKRSLEA 522 (525)
T ss_pred HHHHHHHHHh
Confidence 9999888754
|
|
| >PF00199 Catalase: Catalase; InterPro: IPR011614 Catalases (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=575.34 Aligned_cols=297 Identities=29% Similarity=0.424 Sum_probs=239.5
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccCC-CceeeEEEEecCCCCCC--CcccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHP-GKCYPVIVRHSNSLSAD--DDARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~-g~~~p~~~RfS~~~~~~--~D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|++ ||+|||++||||++|++ +|+.+|+|||||||+++ +|
T Consensus 40 ~~~~~R~~HAKG~~a~G~F~v~~~~~~~~~a~~F~~~Gk~~pv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~-eG---- 114 (384)
T PF00199_consen 40 ERPGERAVHAKGHGAKGEFEVTPDLPELTRAGLFAKPGKTYPVIVRFSNAGGNPGSPDTARDPRGMAIKFFTD-EG---- 114 (384)
T ss_dssp --TCS-SSS-SEEEEEEEEEESSCGTTT---GGGSSTT-EEEEEEEEEESSS-TTS-TTSSSBEEEEEEEEET-TE----
T ss_pred ccCccccccccceEEEEEEEECCcchHhhhcccccCCCcccceeeeecccCCCCCCCccCCCcceeEeEEecc-cc----
Confidence 677899999999999999999999999999999966 89999999999999875 49999999999999886 33
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchh----------hhhhccCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAR----------EEHVKRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||+|+|+|+||++|+++|++|+++.++++ ..+++.+| +....+.+.+++|.||++++|||+|+|+
T Consensus 115 ~~D~v~~n~PvF~~~d~~~F~~~~~a~~~~p~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~p~s~~~~~y~s~~tf~ 194 (384)
T PF00199_consen 115 NWDFVMNNTPVFFARDPEKFLDFLKALKPDPATGLPDPNRLWAFLAAHPEALHQVAWLFSDRPTPASYAHMNYYSIHTFK 194 (384)
T ss_dssp EEEEEEESSSS-S-SSGGGHHHHHHHHSBBTTTTSBCHHHHHHHHHHSGGGHHHHHHHHSGGGSBSSGGGS-EEEESEEE
T ss_pred cceeeeccccceeccCchhccchhhhhcccccccccChHHHHHHhhcChhhhhhhhhhhccCCCCCCccCCCcEeeeeEE
Confidence 3999999999999999999999999988764 34566777 3344444457899999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||+++|.+|+++++.+|+.+.. .+++|||++||++||+++++++|+|+||++++
T Consensus 195 ~~~~~G~~~~vK~~~~P~~g~~~l~~~ea~~~~---------------~~~pdyL~~dL~~rL~~~~~~~~~l~vQl~~~ 259 (384)
T PF00199_consen 195 FTNADGERRYVKYRLVPEQGVKPLTDEEAAKIA---------------GRDPDYLRDDLYERLAAGGPVRWDLQVQLATP 259 (384)
T ss_dssp EEETTSEEEEEEEEEEETTBTTBE-HHHHHHHH---------------HH-TTHHHHHHHHHHHTTS-EEEEEEEEEEEG
T ss_pred eccccCcccEEEEEecCCCCcccCCHHHhhhcc---------------cCCcchhhHHHHHHHhcCCceeEEEEEEecCc
Confidence 999999999999999999888888877765421 13578999999999997788999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.++++|+++|+||+|||+++|+++||+|+|++++++ ++||+++|||||+++||+||+ |||+|+|+++|.
T Consensus 260 ~d~~~~~~~i~D~T~~Wpe~~~P~~~vg~L~l~~~~~~~~~~~e~l~F~P~~~~~Gi~~s~-------Dpil~aR~~aY~ 332 (384)
T PF00199_consen 260 EDPMPFRFNIEDATKEWPEDRSPLIPVGTLTLNRNPPDFFAECEQLAFNPWHLPPGIEPSD-------DPILQARSFAYA 332 (384)
T ss_dssp GGCTTSSSHTT-TTS--TTTTSEEEEEEEEEEEEE-SSHHHHTTT----TT--BTTEEE-S--------HHHHHHHHHHH
T ss_pred ccccccCCCcccCCccCCCcCceeeeeeeEeecccccchhhhhhhhhccccccccceecCC-------Ccchhcchhhhh
Confidence 99999999999999999999999999999999998888 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCC
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCP 2043 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2280)
+|+++|+|.+ ++|.+|| -|.|+
T Consensus 333 ~s~~~R~~~n--------~~~lp~n--~p~~~ 354 (384)
T PF00199_consen 333 DSQRRRLGAN--------YQQLPVN--EPKCP 354 (384)
T ss_dssp HHHHHHTSTT--------GGGSGGG--S-SSS
T ss_pred hhhhccCCcc--------cccCCCC--CCCCC
Confidence 9999999998 4666666 44444
|
11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. Based on a phylogenetic analysis, catalases can be classified into clade 1, 2 and 3. Clade 1 contains small subunit catalases from plants and a subset of bacteria; clade 2 contains large subunit catalases from fungi and a second subset of bacteria; and clade 3 contains small subunit catalases from bacteria, fungi, protists, animals, and plants [, ]. This entry represent the core-forming domain of mono-functional, haem-containing catalases. It does not cover the region that carries an immune-responsive amphipathic octa-peptide that is found in the C-terminal of some catalases (IPR010582 from INTERPRO).; GO: 0004096 catalase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 7CAT_A 3NWL_D 4BLC_D 1TH3_D 1TH4_A 1TGU_B 1TH2_D 3RGS_D 3RE8_D 3RGP_C .... |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=603.47 Aligned_cols=500 Identities=17% Similarity=0.192 Sum_probs=379.0
Q ss_pred cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCC
Q 037878 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563 (2280)
Q Consensus 484 ~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~ 563 (2280)
.|+++|+++.++++. .+++||+||.++++++|+.|++. |+++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 97 ~~~~~Al~~~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~ 172 (655)
T PRK03584 97 RDDRPAIIFRGEDGP-RRELSWAELRRQVAALAAALRAL---GVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPD 172 (655)
T ss_pred CCCCeEEEEECCCCc-eEEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCC
Confidence 479999998876553 47899999999999999999998 99999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHhhcCCeEEEEccccchh---------hcc--CCCCCCC-cccccccc--------------cc
Q 037878 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSA---------VRV--GSWPNLP-WLHTDSWV--------------KN 617 (2280)
Q Consensus 564 ~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~---------~~~--~~~~~~~-~~~~~~~~--------------~~ 617 (2280)
++.++ +.+++++++++++++++..... +.. ...+... .+...... ..
T Consensus 173 ~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 245 (655)
T PRK03584 173 FGVQG-------VLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWED 245 (655)
T ss_pred CCHHH-------HHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHH
Confidence 99887 8899999999999997643210 000 0011110 00000000 00
Q ss_pred ccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHH-HHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHH
Q 037878 618 SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLI-HNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLF 696 (2280)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~ 696 (2280)
................++|++||+|||||||.||||++||++++ +.+......+++.++|+++++.++.|++.. .++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~ 323 (655)
T PRK03584 246 FLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN--WLV 323 (655)
T ss_pred HhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH--HHH
Confidence 00000011112234567999999999999999999999999975 446666677889999999999999987643 467
Q ss_pred HHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHH
Q 037878 697 TAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTV 776 (2280)
Q Consensus 697 ~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~ 776 (2280)
.+|+.|++++++++..+..++..++++++++++|++..+|+++..+.+.... .....++++||.+++|||++++++.
T Consensus 324 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~~~~~~l~sLr~i~~~Ge~l~~~~~ 400 (655)
T PRK03584 324 SGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV---PGETHDLSALRTIGSTGSPLPPEGF 400 (655)
T ss_pred HHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC---ccccCChhheEEEEEecCCCCHHHH
Confidence 8999999999987655456899999999999999999999999887643111 1123678999999999999999999
Q ss_pred HHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCee
Q 037878 777 KRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEG 856 (2280)
Q Consensus 777 ~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~G 856 (2280)
+++.+.+. ++..+.+.||+||++....... ... ....|++|.|.+|++++|+|+++. . + .|+.|
T Consensus 401 ~~~~~~~~----~~~~~~~~yG~TE~~~~~~~~~-~~~--------~~~~g~~g~p~~g~~~~ivd~~g~-~-~-~g~~G 464 (655)
T PRK03584 401 DWVYEHVK----ADVWLASISGGTDICSCFVGGN-PLL--------PVYRGEIQCRGLGMAVEAWDEDGR-P-V-VGEVG 464 (655)
T ss_pred HHHHHHhC----CCceEEeccChHhhhcccccCC-CCC--------CcCCCccCCCcCCceeEEECCCCC-C-C-CCCce
Confidence 99988763 3577999999999864332211 101 122477899999999999998753 3 3 69999
Q ss_pred EEEEcCC--CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHH
Q 037878 857 EVWISSP--SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVE 933 (2280)
Q Consensus 857 EL~i~Gp--~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~ 933 (2280)
||+|+|| +++.||||+|+.++ |...++. ...+||+|||+|+++ ||.++|+||+||+||++|+||+|.|||++|.
T Consensus 465 eL~v~gp~p~~~~gy~~~~~~~~--~~~~~~~-~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~ 541 (655)
T PRK03584 465 ELVCTKPFPSMPLGFWNDPDGSR--YRDAYFD-TFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVE 541 (655)
T ss_pred EEEEccCCCCCcceeeCCCccch--HHHhhhc-cCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHH
Confidence 9999996 79999999998653 2221111 124689999999997 9999999999999999999999999999999
Q ss_pred hccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCc
Q 037878 934 SSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTM 1013 (2280)
Q Consensus 934 ~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~l 1013 (2280)
+||+|.+ |+|++++++..+ +.+ +++++..++...++++.+.+++.+..++...+.|..++.+++|
T Consensus 542 ~~p~V~e---a~vvg~~~~~~g----------~~~--~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~l 606 (655)
T PRK03584 542 ALPEVLD---SLVIGQEWPDGD----------VRM--PLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDI 606 (655)
T ss_pred hCCCcce---EEEEeeEcCCCC----------EEE--EEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCC
Confidence 9999975 899998775322 222 2223334444344555667777777666666666677778999
Q ss_pred cCCCCcccchHHHHHHhhcC
Q 037878 1014 SKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1014 P~t~sGKvdR~~L~~~~~~~ 1033 (2280)
|+|+||||+|++|++.+...
T Consensus 607 P~t~sGKi~r~~lr~~~~~~ 626 (655)
T PRK03584 607 PRTLSGKKVELPVKKLLHGR 626 (655)
T ss_pred CCCCCccchHHHHHHHHcCC
Confidence 99999999999999887543
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-56 Score=604.81 Aligned_cols=442 Identities=18% Similarity=0.222 Sum_probs=339.8
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEc---CCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWIN---EEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL 541 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~---~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~ 541 (2280)
.+...++.+++++++++ +|+++|+.+.+ ++..+++.+||+||+++++++|++|+++ |+++||+|+|+++|++
T Consensus 41 ~~~~~t~~~~l~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~---Gv~~Gd~Vai~~~n~~ 115 (666)
T PLN02614 41 IEGMDSCWDVFRMSVEK--YPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSV---GVKDEAKCGIYGANSP 115 (666)
T ss_pred CCCCCcHHHHHHHHHHh--CCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCH
Confidence 44556899999988877 48999987642 1112235689999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCC---CCCC-cccccccc--
Q 037878 542 DFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSW---PNLP-WLHTDSWV-- 615 (2280)
Q Consensus 542 e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~---~~~~-~~~~~~~~-- 615 (2280)
||++++|||+++|+++||+++..+.++ +.++++++++++++++.+....+..... +.+. .+..+...
T Consensus 116 e~~~~~lA~~~~Gav~vpl~~~~~~~~-------l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~ 188 (666)
T PLN02614 116 EWIISMEACNAHGLYCVPLYDTLGAGA-------VEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSRE 188 (666)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCHHH-------HHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChH
Confidence 999999999999999999999999888 8899999999999997654322211000 0000 01000000
Q ss_pred ------------cccccc---ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHc-----CCCC
Q 037878 616 ------------KNSKNL---LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY-----KSTS 675 (2280)
Q Consensus 616 ------------~~~~~~---~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~-----~~~~ 675 (2280)
...... ............++|+|+|+|||||||.||||++||+|+++.+......+ ++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~ 268 (666)
T PLN02614 189 QKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTV 268 (666)
T ss_pred HhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCC
Confidence 000000 00001112234679999999999999999999999999998877665543 5678
Q ss_pred CcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccc----
Q 037878 676 KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKD---- 751 (2280)
Q Consensus 676 ~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~---- 751 (2280)
+|++++++|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|++.++|.+++.+.+.......
T Consensus 269 ~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 342 (666)
T PLN02614 269 KDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-----GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF 342 (666)
T ss_pred CcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCH
Confidence 999999999999998753 456678899987753 2789999999999999999999999887653321000
Q ss_pred ----------------------cc--cc-----------cCC-CCccEEEEecCCCCHHHHHHHHHHhcCCCCCCccccc
Q 037878 752 ----------------------KV--RS-----------FDL-SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795 (2280)
Q Consensus 752 ----------------------~~--~~-----------~~l-~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n 795 (2280)
.. .+ ..+ ++||.+++||++++++ +.+|.+.+ .++.++|
T Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~-~~~~~~~~-----~~~~i~~ 416 (666)
T PLN02614 343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASH-VESFLRVV-----ACCHVLQ 416 (666)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHH-HHHHHHHh-----cCCCEEe
Confidence 00 00 012 6899999999999987 56777664 3578999
Q ss_pred ccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEc-CCCCcccCCCCCeeEEEEcCCCcccccCCCch
Q 037878 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN-PETSEEIGEPGKEGEVWISSPSAGIGYWGREE 874 (2280)
Q Consensus 796 ~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd-~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~ 874 (2280)
+||+||++..++...... ....+++|+|+||++++|+| ++++...+++|+.|||+|+||+++.|||++|+
T Consensus 417 ~YG~TE~~~~~~~~~~~~---------~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe 487 (666)
T PLN02614 417 GYGLTESCAGTFVSLPDE---------LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRED 487 (666)
T ss_pred eCchHhhhhheeeecccc---------CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHH
Confidence 999999986544322110 11247899999999999998 44433445789999999999999999999999
Q ss_pred hhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCcCCceeEEEecc
Q 037878 875 LSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHIRPGCCAVIGVP 950 (2280)
Q Consensus 875 ~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~ 950 (2280)
.|+++|. +|||||||+|+++ ||+|+|+||+||+||+ +|+||+|.|||++|.+||.|.+ |+|++.+
T Consensus 488 ~T~~~f~--------dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~---~~V~g~~ 554 (666)
T PLN02614 488 LTKEVLI--------DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDS---VWVYGNS 554 (666)
T ss_pred Hhhhhhc--------cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeE---EEEEecC
Confidence 9999984 3899999999997 9999999999999997 6999999999999999999975 8888854
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=603.02 Aligned_cols=512 Identities=18% Similarity=0.235 Sum_probs=377.7
Q ss_pred CCCCCHHHHHHhhccccccCCceEEEEE---cCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHh
Q 037878 466 PELSSLDGYLKHWGTHRITQKKTLFTWI---NEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLD 542 (2280)
Q Consensus 466 ~~~~tl~~~l~~~a~~~~~~d~~A~~~~---~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e 542 (2280)
+...++.+++++.+++. |+++|+.+. ++....++.+||+||.++++++|++|+++ |+++||+|+|+++|++|
T Consensus 41 ~~~~tl~~~l~~~a~~~--p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~---Gv~~gd~Vai~~~n~~e 115 (651)
T PLN02736 41 PEIGTLHDNFVYAVETF--RDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQH---GIPKGACVGLYFINRPE 115 (651)
T ss_pred CCCCCHHHHHHHHHHhC--CCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCCHH
Confidence 44568999999988774 889998542 21112246799999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCccc-ccccc----
Q 037878 543 FVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLH-TDSWV---- 615 (2280)
Q Consensus 543 ~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~-~~~~~---- 615 (2280)
|+++++||+++|+++||+++..+.++ +.++++++++++++++.+....+... ..+.+..+. .+...
T Consensus 116 ~~~~~lA~~~~G~v~vpl~~~~~~~~-------l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~ 188 (651)
T PLN02736 116 WLIVDHACSAYSYVSVPLYDTLGPDA-------VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLP 188 (651)
T ss_pred HHHHHHHHHHcCCeEEEeecCCCHHH-------HHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhh
Confidence 99999999999999999999998888 88999999999999986544322110 111111110 00000
Q ss_pred -------------ccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEE
Q 037878 616 -------------KNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682 (2280)
Q Consensus 616 -------------~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~ 682 (2280)
..................++|+|+|+|||||||.||||++||+|+++.+......+++.++|+++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~ 268 (651)
T PLN02736 189 SLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISY 268 (651)
T ss_pred hhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEe
Confidence 0000000000111234578999999999999999999999999999999888888889999999999
Q ss_pred cCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccc------------
Q 037878 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSK------------ 750 (2280)
Q Consensus 683 ~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~------------ 750 (2280)
+|++|+++++ .++.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+......
T Consensus 269 lPl~h~~~~~-~~~~~l~~G~~i~~~~~-----~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (651)
T PLN02736 269 LPLAHIYERV-NQIVMLHYGVAVGFYQG-----DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFN 342 (651)
T ss_pred CCHHHHHHHH-HHHHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999986 57778999999887653 67889999999999999999999988765432100
Q ss_pred -------------cccc-----------ccCC-CCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccc
Q 037878 751 -------------DKVR-----------SFDL-SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVF 805 (2280)
Q Consensus 751 -------------~~~~-----------~~~l-~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~ 805 (2280)
.... ...+ +++|.+++||+++++++.+++.+.+ ++.++++||+||++..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~------g~~~~~~YG~TE~~~~ 416 (651)
T PLN02736 343 AAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF------GGRVLEGYGMTETSCV 416 (651)
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh------CCCeEEEechHHhchh
Confidence 0000 0012 4899999999999999999988764 4679999999999876
Q ss_pred eecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCc--ccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhh
Q 037878 806 VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE--EIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNE 883 (2280)
Q Consensus 806 ~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~--~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~ 883 (2280)
++..... ....+++|+|+||++++|+|.+++. ....+++.|||+|+||+++.|||++|+.|+++|..
T Consensus 417 ~~~~~~~----------~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~- 485 (651)
T PLN02736 417 ISGMDEG----------DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDE- 485 (651)
T ss_pred eeccCCC----------CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhcc-
Confidence 5543211 1234789999999999999943221 11134567999999999999999999999999853
Q ss_pred ccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccc
Q 037878 884 LQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISV 961 (2280)
Q Consensus 884 ~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~ 961 (2280)
+|||||||+|+++ ||.|+|+||+||+||+ +|+||+|.|||++|.+||.|.+ |+|++.. .+
T Consensus 486 ------dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~---a~V~g~~---~~------ 547 (651)
T PLN02736 486 ------DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQ---CFVYGDS---LN------ 547 (651)
T ss_pred ------CCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeE---EEEEecC---CC------
Confidence 4899999999997 9999999999999998 6999999999999999999975 7888721 11
Q ss_pred cCCCCceEEEEEEEec--------CCCC-C-------CHHHHHHHHHHHHH-----hcCcceeEEEEecCCCcc------
Q 037878 962 SDGSDQVGLVVIAEVR--------DGKP-V-------DKDVIENIKTRVVE-----EHGVTVASVKLIKPRTMS------ 1014 (2280)
Q Consensus 962 ~~~~~~~~~vv~~~~~--------~~~~-~-------~~~l~~~l~~~l~~-----~~~~~~~~~~lv~~~~lP------ 1014 (2280)
....++++. ... .+.. . ..++.+.+.+.+.. .+.....+..+...++.|
T Consensus 548 ---~~~~A~vv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 623 (651)
T PLN02736 548 ---SSLVAVVVV-DPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGL 623 (651)
T ss_pred ---ceeEEEEEe-CHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCc
Confidence 123333332 211 0111 0 11222333332222 233334444455556665
Q ss_pred CCCCcccchHHHHHHhhcCC
Q 037878 1015 KTTSGKIKRFECLKQFVDGT 1034 (2280)
Q Consensus 1015 ~t~sGKvdR~~L~~~~~~~~ 1034 (2280)
+|++||++|+++++.|.+..
T Consensus 624 lT~~~Ki~R~~i~~~~~~~i 643 (651)
T PLN02736 624 LTPTFKVKRPQAKAYFAKAI 643 (651)
T ss_pred CChhhhhhHHHHHHHHHHHH
Confidence 79999999999999986643
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=597.84 Aligned_cols=505 Identities=22% Similarity=0.300 Sum_probs=388.7
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCC--ceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEG--VAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g--~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
.++.+++++.+++. |+++|+.+....+ ...+++||+||.++++++|+.|++. |+++||+|+++++|+++++++
T Consensus 25 ~t~~~~l~~~a~~~--p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~---Gi~~gd~V~i~~~n~~e~~~~ 99 (632)
T PRK07529 25 ASTYELLSRAAARH--PDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSL---GVGPGDVVAFLLPNLPETHFA 99 (632)
T ss_pred CCHHHHHHHHHHHC--CCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHH
Confidence 47889999888774 8999998753221 1236899999999999999999998 999999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch-----hhc--cCCCCCCCcc-ccc------
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS-----AVR--VGSWPNLPWL-HTD------ 612 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~-----~~~--~~~~~~~~~~-~~~------ 612 (2280)
+|||+++| +++|+++..+.++ +.++++++++++++++..... .+. ....+....+ ..+
T Consensus 100 ~lA~~~~G-i~~pi~~~~~~~~-------i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (632)
T PRK07529 100 LWGGEAAG-IANPINPLLEPEQ-------IAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLP 171 (632)
T ss_pred HHHHHHhC-EEEeCCCcCCHHH-------HHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccc
Confidence 99999999 5699999999888 889999999999999754321 000 0001111100 000
Q ss_pred -------------------cccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCC
Q 037878 613 -------------------SWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS 673 (2280)
Q Consensus 613 -------------------~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~ 673 (2280)
++...................++++++|+|||||||.||||++||+++++........+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~ 251 (632)
T PRK07529 172 GPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL 251 (632)
T ss_pred ccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCC
Confidence 0000000000000011123467999999999999999999999999999988888888888
Q ss_pred CCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCH---HHHHHHHhhcceeeecCcHHHHHHHHHHHhccc
Q 037878 674 TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNP---LLWLETMSKYRATHSAGPNFAFELMVRRLESSK 750 (2280)
Q Consensus 674 ~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p---~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~ 750 (2280)
.+++++++.+|++|.++++..++.++..|+++++.++..+. ++ ..+++.++++++|++.++|+++..+.+...
T Consensus 252 ~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~-~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--- 327 (632)
T PRK07529 252 GPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYR-GPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV--- 327 (632)
T ss_pred CCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccC-cchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---
Confidence 99999999999999999988899999999999997654432 32 578899999999999999999988875421
Q ss_pred ccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeecccc
Q 037878 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVD 830 (2280)
Q Consensus 751 ~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG 830 (2280)
...++++||.+++||+++++++.++|.+.+ +++++|.||+||++.+++..... +....+++|
T Consensus 328 ---~~~~~~slr~v~~gg~~l~~~l~~~~~~~~------g~~l~~~YG~TE~~~~~~~~~~~---------~~~~~~svG 389 (632)
T PRK07529 328 ---DGHDISSLRYALCGAAPLPVEVFRRFEAAT------GVRIVEGYGLTEATCVSSVNPPD---------GERRIGSVG 389 (632)
T ss_pred ---cCCCccceEEEEEcCCCCCHHHHHHHHHHh------CCcEeeeecccccCcccccCCcc---------ccccCCCcc
Confidence 124688999999999999999999998864 56899999999998766543221 122357899
Q ss_pred CCCCCceEEEE--cCCCC-cccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeE
Q 037878 831 QNDPDVDIRIV--NPETS-EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKF 906 (2280)
Q Consensus 831 ~p~pg~~v~Iv--d~~~~-~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l 906 (2280)
.|+|+++++|+ |+++. ...++.|+.|||+|+||+++.||++++ .+.+.|. +++||+|||+|+++ ||.+
T Consensus 390 ~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~-------~~gw~~TGDlg~~d~dG~l 461 (632)
T PRK07529 390 LRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWL-------EDGWLNTGDLGRIDADGYF 461 (632)
T ss_pred cccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-ccccccc-------CCCceEcCcEEEEcCCceE
Confidence 99999999986 55432 145579999999999999999999765 4555553 25899999999997 9999
Q ss_pred EEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHH
Q 037878 907 FITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKD 985 (2280)
Q Consensus 907 ~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~ 985 (2280)
+|.||+||+||++|+||+|.|||++|.+||+|.+ |+|++.+++..++ ..+++++ ..++.. ..++
T Consensus 462 ~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~---a~vvg~~d~~~ge---------~~~a~v~---l~~~~~~~~~~ 526 (632)
T PRK07529 462 WLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVAL---AAAVGRPDAHAGE---------LPVAYVQ---LKPGASATEAE 526 (632)
T ss_pred EEEecccCEEEeCCEEECHHHHHHHHHhCCCeeE---EEEEeccCCCCCc---------eeEEEEE---EcCCCCCCHHH
Confidence 9999999999999999999999999999999975 8899888764321 1222332 233332 3367
Q ss_pred HHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCC
Q 037878 986 VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGT 1034 (2280)
Q Consensus 986 l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~ 1034 (2280)
+.+++++++.+.+++|.. ++.+++||+|++|||+|++|++.+.+..
T Consensus 527 l~~~~~~~l~~~~~~P~~---i~~v~~lP~t~~GKi~r~~Lr~~~~~~~ 572 (632)
T PRK07529 527 LLAFARDHIAERAAVPKH---VRILDALPKTAVGKIFKPALRRDAIRRV 572 (632)
T ss_pred HHHHHHHhcchhccCCcE---EEEecCCCCCCCCcccHHHHHHHHHHHH
Confidence 788888888765665543 3444899999999999999999876543
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=597.70 Aligned_cols=514 Identities=19% Similarity=0.231 Sum_probs=386.4
Q ss_pred HHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHH
Q 037878 471 LDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGC 550 (2280)
Q Consensus 471 l~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~ 550 (2280)
..+++++.++. .|+++|+++.+++....+.+||+||.++++++|+.|+++ |+++||+|+++++|++++++++|||
T Consensus 55 ~~~~l~~~~~~--~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~~~~~lA~ 129 (629)
T PRK10524 55 CHNAVDRHLAK--RPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSL---GVQRGDRVLIYMPMIAEAAFAMLAC 129 (629)
T ss_pred HHHHHHHhhcc--CCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHHH
Confidence 35667666654 489999988653322347899999999999999999998 9999999999999999999999999
Q ss_pred HHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch---------hh----ccCCCCCCCccccccccc-
Q 037878 551 MRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS---------AV----RVGSWPNLPWLHTDSWVK- 616 (2280)
Q Consensus 551 l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~- 616 (2280)
+++|++++|+++.++.++ +..++++++++++++++.... .+ ..........+..+....
T Consensus 130 ~~~Gav~v~~~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 202 (629)
T PRK10524 130 ARIGAIHSVVFGGFASHS-------LAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAP 202 (629)
T ss_pred HHhCcEEEeeCCCCCHHH-------HHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 999999999999999888 889999999999998653210 00 000000000111000000
Q ss_pred ---------cccccc---cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHH-HHHHHHHcCCCCCcEEEEEc
Q 037878 617 ---------NSKNLL---AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN-VKLMRKRYKSTSKTVLVSWL 683 (2280)
Q Consensus 617 ---------~~~~~~---~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~-~~~~~~~~~~~~~d~~l~~~ 683 (2280)
...... .....+.....++|++||+|||||||.||||+++|++++.. .......+++.++|++++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 282 (629)
T PRK10524 203 MARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCAS 282 (629)
T ss_pred cCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcC
Confidence 000000 00011112246789999999999999999999999997544 34445567888999999999
Q ss_pred CchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccE
Q 037878 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763 (2280)
Q Consensus 684 pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~ 763 (2280)
|++|+++....++.+++.|+++++++......++..+++.++++++|++.++|++++.+.+.... .....++++||.
T Consensus 283 ~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~~~~~~l~~lr~ 359 (629)
T PRK10524 283 DIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA---LLRKHDLSSLRA 359 (629)
T ss_pred CCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc---cccccChhheeE
Confidence 99999887778899999999999987654456899999999999999999999999887653211 112356889999
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcC
Q 037878 764 LMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNP 843 (2280)
Q Consensus 764 l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~ 843 (2280)
+++|||++++++.+++.+.+ ++.++|.||+||++..++........ .....+++|+|+||++++|+|+
T Consensus 360 i~~~Ge~l~~~~~~~~~~~~------~~~v~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~G~p~~g~~~~i~d~ 427 (629)
T PRK10524 360 LFLAGEPLDEPTASWISEAL------GVPVIDNYWQTETGWPILAIARGVED------RPTRLGSPGVPMYGYNVKLLNE 427 (629)
T ss_pred EEEeCCCCCHHHHHHHHHhc------CCCeEeccccccccchhhcCCCCccc------CcCCCCCcccCcCCceEEEEeC
Confidence 99999999999998888764 46799999999998433221111000 0122478999999999999998
Q ss_pred CCCcccCCCCCeeEEEEcCC---CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEEC
Q 037878 844 ETSEEIGEPGKEGEVWISSP---SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVA 919 (2280)
Q Consensus 844 ~~~~~~~p~G~~GEL~i~Gp---~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~ 919 (2280)
+.+. .++.|+.|||+|+|| +++.|||++++.+.+.|... .+++||+|||+|+++ ||.++|+||+||+||++
T Consensus 428 ~~g~-~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~ 502 (629)
T PRK10524 428 VTGE-PCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSL----FGRQVYSTFDWGIRDADGYYFILGRTDDVINVA 502 (629)
T ss_pred CCCC-CCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhcc----CCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeC
Confidence 4343 457999999999998 67899999998777665432 245899999999997 99999999999999999
Q ss_pred CeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-----CCHHHHHHHHHHH
Q 037878 920 GRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-----VDKDVIENIKTRV 994 (2280)
Q Consensus 920 G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-----~~~~l~~~l~~~l 994 (2280)
|+||+|.|||++|.+||+|.+ |+|++++++..++ ..+++++. .++.. ...++.+.+++.+
T Consensus 503 G~ri~p~eIE~~l~~~p~V~e---~~vvg~~d~~~g~---------~~~~~vv~---~~~~~~~~~~~~~~~~~~i~~~~ 567 (629)
T PRK10524 503 GHRLGTREIEESISSHPAVAE---VAVVGVKDALKGQ---------VAVAFVVP---KDSDSLADREARLALEKEIMALV 567 (629)
T ss_pred CEEeCHHHHHHHHHhCCCcce---EEEEccccCCCCe---------EEEEEEEE---CCCCccccccchHHHHHHHHHHH
Confidence 999999999999999999975 8999988764321 12222222 22211 1234566677777
Q ss_pred HHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 995 VEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 995 ~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.+.++..+.|..++.+++||+|+|||++|++|++.+.
T Consensus 568 ~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 604 (629)
T PRK10524 568 DSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAE 604 (629)
T ss_pred HhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHc
Confidence 7766666666777778999999999999999988754
|
|
| >cd08151 AOS Allene oxide synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=552.38 Aligned_cols=321 Identities=41% Similarity=0.672 Sum_probs=276.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhheecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCCcccccc
Q 037878 1690 MDMKYKKIVGNLSANLAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDA 1769 (2280)
Q Consensus 1690 ~~p~~~~~v~~l~~~~~~~~~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~D~~~~~ 1769 (2280)
.+..+++++.+++..|++.+...+.|.+||||+|++|+|+|++|++ ++++++|++|++|||++||||++|+.+|+.+|+
T Consensus 3 ~~~~~~~~~~~~~~~f~~~~~~~g~R~~HaKG~ga~G~F~v~~d~~-~~~a~~F~~g~~~pv~~RfS~~~g~~~D~~~d~ 81 (328)
T cd08151 3 LDSELKKIELNLATMFAAATLKTGRRGTHTIGVGAKGVLTVLAESD-FPEHAFFTAGKRFPVILRHANIVGGDDDASLDG 81 (328)
T ss_pred chHHHHHHHHHHHHHHhhccCCCCcccccCceeeEEEEEEEcCCch-hhhhhhcCCCCeEEEEEEecCCCCCccccccCC
Confidence 4567899999999999999999999999999999999999999999 999999999999999999999999866999999
Q ss_pred cccEEEeeccCCCCCCcceeeecccccccccCChhhHHHHHhhccchhhh-hhccCcchhhhhhhcc-cCCCccccceee
Q 037878 1770 RGAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREE-HVKRVPHIRDAVWKSL-RLSDSYAEMHYY 1847 (2280)
Q Consensus 1770 rG~Aik~~~~~~~~~~~~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~p~s~~~~~y~ 1847 (2280)
|||||||+++. +.++++|||+|||+|+||++|+++|++|+++..+.+.. +...+|......+... +.|.||++++||
T Consensus 82 RG~AiKf~~~~-~~~~~~~D~v~~n~pvF~~~d~~~F~~~~~a~~p~~~~~~~~~~p~~~~~~~~~~~~~p~s~~~~~y~ 160 (328)
T cd08151 82 RGAALRFLNAG-DDDAGPLDLVMNTGESFGFWTAASFADFAGAGLPFREKAAKLRGPLARYAVWASLRRAPDSYTDLHYY 160 (328)
T ss_pred CeEEEEEeccC-CCCCCceeEEEecCCccccCCHHHHHHHHhcCCCcchhhhhhcCHHHHhhhhhcccCCCCCcccccce
Confidence 99999999863 24578899999999999999999999999986665533 3345665554455444 789999999999
Q ss_pred eeeeEEEEEeCCcEEEEEEEeecC-CCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEE
Q 037878 1848 SNICRLFRFTDGQEMYVKFKLRPY-DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIF 1926 (2280)
Q Consensus 1848 s~~~~~~~~~~g~~~~vk~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l 1926 (2280)
|+|||+|+|++|+.+||||+++|. ++..++..+++.+. ........+++.+.+++++|||++||++||++| +++|+|
T Consensus 161 s~~~f~f~~~~G~~~~vK~~~~P~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~L~~dl~~rl~~g-~~~~~l 238 (328)
T cd08151 161 SQICYEFVALDGKSRYARFRLLPPDADTEWDLGEDVLET-IFQRPRLYLPRLPGDTRPKDYLRNEFRQRLQSP-GVRYRL 238 (328)
T ss_pred eEeeEEEECCCCCEEEEEEEEEECCCCccccchhhhhhc-ccccccccchhhcccCCCccHHHHHHHHHHHhC-CceEEE
Confidence 999999999999999999999995 45566666554422 111222445555667789999999999999997 799999
Q ss_pred EEEEeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCChhhhccccccCCcCCC--ccccccCCCccccccccc
Q 037878 1927 QLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCN--EIDVIPATTSSQSASIDH 2004 (2280)
Q Consensus 1927 ~vQ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~~~~e~l~F~P~~~~~--g~~~~~~~~~~~~d~i~~ 2004 (2280)
+||+++++|.. +++++|+||+|||+++|+++||+|+|++++++++||+++|||||+++ ||+++. +.+||.+|++
T Consensus 239 ~iQl~~~~d~~--~~~i~D~T~~Wpe~~~P~i~vg~l~l~~~~~~~~~e~l~F~P~~~~~~~gi~~~~--~~~d~gsi~~ 314 (328)
T cd08151 239 QIQLREVSDDA--TAVALDCCRPWDEDEHPWLDLAVVRLGAPLPNDELEKLAFNPGNTPESLGLPLAY--CADDYASLGH 314 (328)
T ss_pred EEEEechhhcC--CCCCCCCCccCCcccCceEEEEEEEECCCCChhhhHhhcccccccCCCCCccCCC--ChHHhhhHHH
Confidence 99999998755 66788999999999999999999999999888999999999999999 998888 4456777999
Q ss_pred chhhHHHhhhHhhc
Q 037878 2005 GRSLIYEICQHLRN 2018 (2280)
Q Consensus 2005 ~R~~~Y~~s~~~R~ 2018 (2280)
+|+.||+.|+++|.
T Consensus 315 ~R~~vY~~s~~~R~ 328 (328)
T cd08151 315 LRSLVYEISQRLRK 328 (328)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999994
|
Allene oxide synthase converts a fatty acid hydroperoxide to an allene oxide, which is an unstable epoxide. In corals, the enzyme is part of a eiconaosid synthesis pathway that is initiated by a lipoxygenase, which generates the fatty acid hydroperoxides in the first step. The structure of allene oxide synthase closely resembles that of catalase, but allene oxide synthase does not have catalase activity. |
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=596.29 Aligned_cols=495 Identities=17% Similarity=0.194 Sum_probs=372.3
Q ss_pred CCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCC
Q 037878 485 QKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPD 564 (2280)
Q Consensus 485 ~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~ 564 (2280)
++++|+++.++++. .+++||+||.++++++|+.|+++ |+++||+|+++++|++++++++|||+++|++++|+++.+
T Consensus 98 ~~~~a~~~~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~ 173 (652)
T TIGR01217 98 GTEPALLYVDETHE-PAPVTWAELRRQVASLAAALRAL---GVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF 173 (652)
T ss_pred CCCeEEEEECCCCC-eeEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCC
Confidence 57889988876553 37899999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhhcCCeEEEEccccc---------hhhcc--CCCCCCC-cccccc-------------c--ccc
Q 037878 565 PLQRGGQALLKIENISKSCGAVAILSTIGYH---------SAVRV--GSWPNLP-WLHTDS-------------W--VKN 617 (2280)
Q Consensus 565 p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~---------~~~~~--~~~~~~~-~~~~~~-------------~--~~~ 617 (2280)
+.++ +.+++++++++++|+++... ..+.. ...+.+. .+.... . ...
T Consensus 174 ~~~~-------l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 246 (652)
T TIGR01217 174 GARG-------VLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLED 246 (652)
T ss_pred CHHH-------HHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHH
Confidence 9887 88999999999999876431 00000 0011111 000000 0 000
Q ss_pred ccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHH-HHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHH
Q 037878 618 SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLI-HNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLF 696 (2280)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~ 696 (2280)
................++|+++|+|||||||.||||+++|++++ +........+++.++|++++++|++|++. ..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~ 324 (652)
T TIGR01217 247 FTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW--NWLV 324 (652)
T ss_pred HHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh--HHHH
Confidence 00000001111223456899999999999999999999999965 44555566688899999999999999864 3356
Q ss_pred HHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHH
Q 037878 697 TAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTV 776 (2280)
Q Consensus 697 ~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~ 776 (2280)
.+|+.|++++++++..+..++..++++++++++|++..+|.++..+...... .....++++||.+++|||++++++.
T Consensus 325 ~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~---~~~~~~l~sLr~i~~gGe~l~~~~~ 401 (652)
T TIGR01217 325 SGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVH---PARTHDLSALQCVASTGSPLPPDGF 401 (652)
T ss_pred HHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCC---ccccCChhheeEEEeecCCCCHHHH
Confidence 8999999999987554445889999999999999998888877665432111 1123678999999999999999999
Q ss_pred HHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCee
Q 037878 777 KRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEG 856 (2280)
Q Consensus 777 ~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~G 856 (2280)
+++.+.+. ++..+.+.||+||++...... .... ....|++|.|.+|++++|+|+++. ++ +|+.|
T Consensus 402 ~~~~~~~~----~~~~~~~~yG~TE~~~~~~~~-~~~~--------~~~~g~~g~p~~g~~v~ivd~~g~-~~--~g~~G 465 (652)
T TIGR01217 402 RWVYDEIK----ADVWLASISGGTDICSCFAGA-NPTL--------PVHIGEIQAPGLGTAVQSWDPEGK-PV--TGEVG 465 (652)
T ss_pred HHHHHHhC----CCceEEeccCHHHHhccccCC-CCCC--------CCcCCccCCCcCCCceEEECCCCC-CC--CCCcc
Confidence 99988763 245678999999975332211 1111 123477899999999999998763 33 59999
Q ss_pred EEEEcCC--CcccccCCCchhhH--HHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 857 EVWISSP--SAGIGYWGREELSQ--ITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 857 EL~i~Gp--~v~~GY~~~p~~t~--~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
||+|+|| +++.||||||+.|+ +.+.. ..++||+|||+|+++ ||+++|+||+||+||++|+||+|.|||++
T Consensus 466 El~v~gp~p~~~~gy~~~~~~t~~~~~~~~-----~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~ 540 (652)
T TIGR01217 466 ELVCTNPMPSMPIRFWNDPDGSKYRDAYFD-----TYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNA 540 (652)
T ss_pred EEEEecCCCccccceeCCCccchhHHhhhc-----CCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHH
Confidence 9999996 68999999998664 23321 124799999999997 99999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCC
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~ 1011 (2280)
|.+||+|.+ |+|++++++..+ +.+.++ +...++...++++.+.+++.+.+++...+.|..++.++
T Consensus 541 l~~~p~V~e---aavvg~~~~~~g----------e~~~af--Vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~ 605 (652)
T TIGR01217 541 VERLDEVRE---SLCIGQEQPDGG----------YRVVLF--VHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVP 605 (652)
T ss_pred HHhCCCcce---EEEEeeecCCCC----------EEEEEE--EEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECC
Confidence 999999976 899998876432 222222 23344444445556667777766665556666677779
Q ss_pred CccCCCCcccchHHHHHHhh
Q 037878 1012 TMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 1012 ~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
+||+|+||||+|+.|++.+.
T Consensus 606 ~lP~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 606 GIPHTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred CCCCCCCccChHHHHHHHHc
Confidence 99999999999999988754
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-55 Score=597.31 Aligned_cols=509 Identities=15% Similarity=0.124 Sum_probs=375.8
Q ss_pred HHHHhhccccccCCceEEEEEcCC--CceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHH
Q 037878 473 GYLKHWGTHRITQKKTLFTWINEE--GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGC 550 (2280)
Q Consensus 473 ~~l~~~a~~~~~~d~~A~~~~~~~--g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~ 550 (2280)
..|++++.+ +|+++|+++.+++ +...+++||+||.++++++|+.|++. |+++||+|+++++|++|+++++|||
T Consensus 179 ~~l~~~~~~--~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~---Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 179 CCLTPKPSK--TDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDAL---GFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred HHHHHHhcc--CCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 355555433 4899999988753 22347899999999999999999998 9999999999999999999999999
Q ss_pred HHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhc---------cCCCCCCCcc------------
Q 037878 551 MRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR---------VGSWPNLPWL------------ 609 (2280)
Q Consensus 551 l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~---------~~~~~~~~~~------------ 609 (2280)
+++|++++|++++++.++ +.+++++++++++++++.....-+ ....+....+
T Consensus 254 ~~~Gav~vpi~p~~~~~~-------l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~ 326 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSE-------IATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLR 326 (728)
T ss_pred HHcCCEEEeeCCCCCHHH-------HHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccc
Confidence 999999999999999988 889999999999999765321000 0000000000
Q ss_pred ----ccccccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCc
Q 037878 610 ----HTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685 (2280)
Q Consensus 610 ----~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl 685 (2280)
.++++...................++|++||+|||||||+||||+++|++++..+......+++.++|++++.+|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l 406 (728)
T PLN03052 327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNL 406 (728)
T ss_pred cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCc
Confidence 0000000000000000001112356899999999999999999999999988777666666788999999999999
Q ss_pred hhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEE
Q 037878 686 YHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLM 765 (2280)
Q Consensus 686 ~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~ 765 (2280)
+|+++. ..++.+|..|++++++++.. ++..++++++++++|++.++|++++.+.+... ....++++||.++
T Consensus 407 ~w~~g~-~~v~~~L~~Gat~vl~~g~p---~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~-----~~~~dlssLr~i~ 477 (728)
T PLN03052 407 GWMMGP-WLVYASLLNGATLALYNGSP---LGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC-----MAGLDWSSIRCFG 477 (728)
T ss_pred HHHhHH-HHHHHHHHhCCEEEEeCCCC---CCChHHHHHHHHCCCEEEECHHHHHHHHhcCC-----cccCChhheeEEE
Confidence 999997 46789999999999987532 45569999999999999999999988765321 1236789999999
Q ss_pred EecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCC
Q 037878 766 VAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPET 845 (2280)
Q Consensus 766 ~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~ 845 (2280)
+|||+++++...++.+.+. ...+.|.||+||++..+..... .. ....+++|.|.+|++++|+|+++
T Consensus 478 s~Ge~l~~~~~~~~~~~~~-----~~~i~~~yG~TE~~~~~~~~~~-~~--------~~~~g~~g~p~~g~~v~v~d~~g 543 (728)
T PLN03052 478 STGEASSVDDYLWLMSRAG-----YKPIIEYCGGTELGGGFVTGSL-LQ--------PQAFAAFSTPAMGCKLFILDDSG 543 (728)
T ss_pred ecCCCCCHHHHHHHHHhcC-----CCCeEeeccChhhCcccccCCC-CC--------CCCCCccccCCCCceEEEECCCC
Confidence 9999999998777666531 2468999999999764332111 01 11246789999999999999875
Q ss_pred CcccCCCCC--eeEEEEcCC--CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECC
Q 037878 846 SEEIGEPGK--EGEVWISSP--SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAG 920 (2280)
Q Consensus 846 ~~~~~p~G~--~GEL~i~Gp--~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G 920 (2280)
+.+|.|+ .|||+++++ +...+|+|++ .+..-|... +...+++||+|||+++++ ||+++|+||+||+||++|
T Consensus 544 --~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~-p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G 619 (728)
T PLN03052 544 --NPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGM-PVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGG 619 (728)
T ss_pred --CCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcC-CCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCC
Confidence 3446775 699999875 3456788764 344444322 223456799999999997 999999999999999999
Q ss_pred eeechHHHHHHHH-hccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHHHHHHhc
Q 037878 921 RNVYSADVEKTVE-SSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEH 998 (2280)
Q Consensus 921 ~rI~~~EIE~~L~-~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~~l~~~~ 998 (2280)
+||+|.|||++|. .||+|.+ ++|++++++..+. ...+++++. ...++...+ +++++.+++.+.+++
T Consensus 620 ~rI~~~EIE~~l~~~~p~V~e---aaVvg~~d~~~g~--------e~~~afVvl-~~~~g~~~~~~~L~~~i~~~i~~~l 687 (728)
T PLN03052 620 IKVSSVEIERVCNAADESVLE---TAAIGVPPPGGGP--------EQLVIAAVL-KDPPGSNPDLNELKKIFNSAIQKKL 687 (728)
T ss_pred EEeCHHHHHHHHHhcCCCcce---EEEEeeecCCCCc--------EEEEEEEEE-ecCCCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999995 7898875 8999987753220 112233332 111333323 678888888887766
Q ss_pred CcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 999 GVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 999 ~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
...+.+..++.+++||+|.||||+|+.|++.+.+
T Consensus 688 ~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~ 721 (728)
T PLN03052 688 NPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQ 721 (728)
T ss_pred CCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHh
Confidence 5445555666779999999999999999988754
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=589.49 Aligned_cols=502 Identities=20% Similarity=0.260 Sum_probs=377.8
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++.+.+. |+++|+...+ +++||+||+++++++|+.|.++ |+++||+|+++++|++++++++
T Consensus 6 ~~~~~~~~~~~~~~~--p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~---Gv~~gd~V~v~~~n~~~~~~~~ 74 (563)
T PLN02860 6 QAHICQCLTRLATLR--GNAVVTISGN------RRRTGHEFVDGVLSLAAGLLRL---GLRNGDVVAIAALNSDLYLEWL 74 (563)
T ss_pred hhHHHHHHHHHHHhc--CCceEEecCC------ceeeHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCCHHHHHHH
Confidence 346788888888764 8889886421 5799999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhc---cCCCCCCCccc-cc-----------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR---VGSWPNLPWLH-TD----------- 612 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~---~~~~~~~~~~~-~~----------- 612 (2280)
|||+++|++++|+++..+.++ +.++++++++++++++........ ....+...... .+
T Consensus 75 la~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 147 (563)
T PLN02860 75 LAVACAGGIVAPLNYRWSFEE-------AKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLN 147 (563)
T ss_pred HHHhhccEEEEeCCcccCHHH-------HHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchh
Confidence 999999999999999999888 889999999999999765321110 00111111000 00
Q ss_pred ccccccccccc--ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhh
Q 037878 613 SWVKNSKNLLA--ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMG 690 (2280)
Q Consensus 613 ~~~~~~~~~~~--~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 690 (2280)
.+......... ..........++++++|+|||||||.||||+++|++++.........++..++|+++.++|++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 227 (563)
T PLN02860 148 SFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 227 (563)
T ss_pred hccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhcc
Confidence 00000000000 0000112346789999999999999999999999999888777777788999999999999999999
Q ss_pred HHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCC
Q 037878 691 LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770 (2280)
Q Consensus 691 l~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~ 770 (2280)
+. .++.++..|+++++.+. + ++..+++.++++++|++.++|+++..+++...... ...+++++|.+++||++
T Consensus 228 ~~-~~~~~l~~G~~~v~~~~--~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---~~~~~~~lr~~~~gG~~ 299 (563)
T PLN02860 228 LS-SALAMLMVGACHVLLPK--F--DAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM---TWKVFPSVRKILNGGGS 299 (563)
T ss_pred HH-HHHHHHHcCceEEecCC--C--CHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh---ccccccceeEEEeCCCc
Confidence 84 57889999999888653 3 89999999999999999999999988876543211 11457899999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCcee-------------ecCCCceeeccccCCCCCce
Q 037878 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPII-------------LDWQGRVCCGYVDQNDPDVD 837 (2280)
Q Consensus 771 l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~-------------~~~~g~~~~g~vG~p~pg~~ 837 (2280)
+++++.++|.+.+ ++..++|.||+||++..++.......... ..........++|+|+|+++
T Consensus 300 l~~~~~~~~~~~~-----~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~ 374 (563)
T PLN02860 300 LSSRLLPDAKKLF-----PNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVE 374 (563)
T ss_pred CCHHHHHHHHHhc-----CCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcE
Confidence 9999999999875 46789999999999865543221110000 00000111236899999999
Q ss_pred EEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeE
Q 037878 838 IRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLI 916 (2280)
Q Consensus 838 v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~I 916 (2280)
++|+|++ +|++|||+|+|++++.|||++|+.|++.|.. +|||+|||+|+++ ||+++|+||+||+|
T Consensus 375 v~i~~~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~-------~g~~~TGDl~~~d~dG~l~~~GR~~d~i 440 (563)
T PLN02860 375 LKIGLDE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSN-------DGWLDTGDIGWIDKAGNLWLIGRSNDRI 440 (563)
T ss_pred EEEecCC-------CCceeEEEEecCcccccccCCccccchhccC-------CCeEEccceEEEcCCCCEEEeeccccee
Confidence 9999864 5789999999999999999999999988753 4899999999997 99999999999999
Q ss_pred EECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC---------------C
Q 037878 917 IVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK---------------P 981 (2280)
Q Consensus 917 Ki~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~---------------~ 981 (2280)
|++|+||+|.|||++|.+||+|.+ |+|++++++..++ ..+++++. .++. .
T Consensus 441 ~~~G~~v~p~eIE~~l~~~p~V~~---~~v~~~~~~~~~~---------~~~a~v~~---~~~~~~~~~~~~~~~~~~~~ 505 (563)
T PLN02860 441 KTGGENVYPEEVEAVLSQHPGVAS---VVVVGVPDSRLTE---------MVVACVRL---RDGWIWSDNEKENAKKNLTL 505 (563)
T ss_pred EECCEEccHHHHHHHHHhCCCcce---eEEEEEecCcCCc---------eEEEEEEE---CCccccccccchhhcccccc
Confidence 999999999999999999999975 8899987764331 12223322 2220 1
Q ss_pred CCHHHHHHHHHH-HHHhcCcceeEEEEec-CCCccCCCCcccchHHHHHHhhcC
Q 037878 982 VDKDVIENIKTR-VVEEHGVTVASVKLIK-PRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 982 ~~~~l~~~l~~~-l~~~~~~~~~~~~lv~-~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
..+++.+.++++ |+. +++| ..++. .++||+|++|||+|++|++++.+.
T Consensus 506 ~~~~l~~~~~~~~L~~-~~~P---~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~ 555 (563)
T PLN02860 506 SSETLRHHCREKNLSR-FKIP---KLFVQWRKPFPLTTTGKIRRDEVRREVLSH 555 (563)
T ss_pred cHHHHHHHHhhCcccc-cccc---eEEEEEecCCCCCcccchhHHHHHHHHHHH
Confidence 113444555442 433 4444 33322 477999999999999999987543
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=597.11 Aligned_cols=527 Identities=19% Similarity=0.225 Sum_probs=375.4
Q ss_pred ccCcccccCCCCCCCCCCCCHHHHHHhhccccccCCceEEEEE---cCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCC
Q 037878 451 ARNFKELEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWI---NEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI 527 (2280)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~---~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv 527 (2280)
+++....+++... .+...++.+++++.+++. |+++|+.+. +.+...++.+||+||.++++++|++|.++ |+
T Consensus 26 ~~~~~~~~~~~~~-~~~~~t~~~~l~~~~~~~--p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~---Gv 99 (660)
T PLN02861 26 YRSIYAKDGLLDL-PADIDSPWQFFSDAVKKY--PNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSR---GV 99 (660)
T ss_pred ccccccccccccC-CCCCCCHHHHHHHHHHhC--CCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHc---CC
Confidence 4443333433332 355678899999888774 789988653 22112346799999999999999999998 99
Q ss_pred CCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCC-
Q 037878 528 KPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWP- 604 (2280)
Q Consensus 528 ~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~- 604 (2280)
++||+|+|+++|++||++++|||+++|+++||+++.++.++ +.++++++++++++++.+....+... ..+
T Consensus 100 ~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~-------l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~ 172 (660)
T PLN02861 100 NPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANA-------VEFIINHAEVSIAFVQESKISSILSCLPKCSS 172 (660)
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHH-------HHHHHHcCCCCEEEECHHHHHHHHHhhhhCCC
Confidence 99999999999999999999999999999999999999888 88999999999999976543322110 000
Q ss_pred CCCc-ccccccc--------------ccccccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHH
Q 037878 605 NLPW-LHTDSWV--------------KNSKNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM 667 (2280)
Q Consensus 605 ~~~~-~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~ 667 (2280)
.+.. +..++.. ....+.. ........+..++|+|+|+|||||||.||||++||+|+++.+...
T Consensus 173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~ 252 (660)
T PLN02861 173 NLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLST 252 (660)
T ss_pred CCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHH
Confidence 1110 0000000 0000000 000111223468999999999999999999999999999887776
Q ss_pred HHHcC-----CCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHH
Q 037878 668 RKRYK-----STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELM 742 (2280)
Q Consensus 668 ~~~~~-----~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l 742 (2280)
...++ ..++|++++++|++|.+++... +.+++.|+++++.. .++..+++.++++++|++.++|.+++.+
T Consensus 253 ~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~-~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l 326 (660)
T PLN02861 253 DHLLKVTDRVATEEDSYFSYLPLAHVYDQVIE-TYCISKGASIGFWQ-----GDIRYLMEDVQALKPTIFCGVPRVYDRI 326 (660)
T ss_pred HhccccccccCCCCCEEEEECcHHHHHHHHHH-HHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCcEEeechHHHHHH
Confidence 55543 4678999999999999998654 45789999988763 2788999999999999999999999887
Q ss_pred HHHHhccc--------------------------------cccccc-------CC-CCccEEEEecCCCCHHHHHHHHHH
Q 037878 743 VRRLESSK--------------------------------DKVRSF-------DL-SSMKFLMVAAEPVRQTTVKRFVEL 782 (2280)
Q Consensus 743 ~~~~~~~~--------------------------------~~~~~~-------~l-~~Lr~l~~gGe~l~~~l~~~~~~~ 782 (2280)
.+...... ...... .+ +++|.+++||+++++++ .+|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~-~~~~~~ 405 (660)
T PLN02861 327 YTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHV-EEFLRV 405 (660)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHH-HHHHHH
Confidence 64211100 000000 12 58999999999999996 556665
Q ss_pred hcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEc-CCCCcccCCCCCeeEEEEc
Q 037878 783 TRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN-PETSEEIGEPGKEGEVWIS 861 (2280)
Q Consensus 783 ~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd-~~~~~~~~p~G~~GEL~i~ 861 (2280)
+ ....++|+||+||+++.+++..... ....+++|+|+|+++++|+| ++++....+.++.|||+|+
T Consensus 406 ~-----~~~~l~~~YG~TE~~~~~~~~~~~~---------~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vr 471 (660)
T PLN02861 406 T-----SCSVLSQGYGLTESCGGCFTSIANV---------FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLR 471 (660)
T ss_pred H-----cCCCeeEecchhhhhhceeeccccc---------CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEc
Confidence 4 2346899999999987655432111 11247899999999999998 3333233346678999999
Q ss_pred CCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCc
Q 037878 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHI 939 (2280)
Q Consensus 862 Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~ 939 (2280)
||+++.||||+|+.|+++|. +|||||||+|+++ ||.|+|+||+||+||+ +|+||+|.|||++|.+||.|.
T Consensus 472 Gp~v~~GY~~~pe~T~~~f~--------dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~ 543 (660)
T PLN02861 472 GNTLFSGYHKRQDLTEEVLI--------DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIA 543 (660)
T ss_pred CCcccccccCCHHHHHhhhh--------ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCee
Confidence 99999999999999999995 3899999999997 9999999999999998 799999999999999999997
Q ss_pred CCceeEEEeccccccccccccccCCCCceEEEEEEEec--------CCCCCC-H------HHHHHHHHHHHH---h--cC
Q 037878 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR--------DGKPVD-K------DVIENIKTRVVE---E--HG 999 (2280)
Q Consensus 940 ~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~--------~~~~~~-~------~l~~~l~~~l~~---~--~~ 999 (2280)
+ |+|++.+.. ...+++++.. .. .+...+ . +....+.+.+.. . +.
T Consensus 544 ~---a~V~G~~~~------------~~~~A~vv~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 607 (660)
T PLN02861 544 S---IWVYGNSFE------------SFLVAVVVPD-RQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLR 607 (660)
T ss_pred E---EEEEecCCc------------ceeEEEEEcC-HHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCC
Confidence 5 888886521 1223333321 10 000000 1 122333333332 1 22
Q ss_pred cceeEEEEec-CCCc-----cCCCCcccchHHHHHHhhcCCC
Q 037878 1000 VTVASVKLIK-PRTM-----SKTTSGKIKRFECLKQFVDGTL 1035 (2280)
Q Consensus 1000 ~~~~~~~lv~-~~~l-----P~t~sGKvdR~~L~~~~~~~~~ 1035 (2280)
....+..+.. .+.+ .+|+++|+.|+.+.+.|.+.+.
T Consensus 608 ~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~ 649 (660)
T PLN02861 608 GFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCID 649 (660)
T ss_pred CcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHH
Confidence 2222223322 4556 7999999999999999977553
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=587.72 Aligned_cols=503 Identities=20% Similarity=0.282 Sum_probs=390.8
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
.+.+.+++.+... .|+++|+.+.++++ .+++||+||.++++++|+.|.+. |+++||+|+++++|++++++++||
T Consensus 44 ~~~~~~~~~~~~~-~~~~~a~~~~~~~~--~~~~Ty~el~~~v~~~A~~L~~~---gv~~gd~V~i~~~n~~~~~~~~la 117 (570)
T PRK04319 44 IAYEAIDRHADGG-RKDKVALRYLDASR--KEKYTYKELKELSNKFANVLKEL---GVEKGDRVFIFMPRIPELYFALLG 117 (570)
T ss_pred HHHHHHHHhhccC-CCCceEEEEECCCC--ceeecHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCHHHHHHHHH
Confidence 4556777776532 47999998865432 36899999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcc-ccccccc------ccccc-
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWL-HTDSWVK------NSKNL- 621 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~- 621 (2280)
|+++|++++|+++..+.++ +.+++++++++.++++............+....+ ..+.... ...+.
T Consensus 118 ~~~~G~v~vpl~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (570)
T PRK04319 118 ALKNGAIVGPLFEAFMEEA-------VRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALM 190 (570)
T ss_pred HHHcCcEEcccccccCHHH-------HHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHH
Confidence 9999999999999999887 8899999999999998654332211111111100 0000000 00000
Q ss_pred -ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 622 -LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 622 -~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
............++|+++|+|||||||.||||+++|+++++.+......+++.++|++++..|++|.++....++.++.
T Consensus 191 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~ 270 (570)
T PRK04319 191 EQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWL 270 (570)
T ss_pred hhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHh
Confidence 0011112233467899999999999999999999999999888887788889999999999999999998888999999
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|+++++... . .++..+++.++++++|++.++|++++.+.+..... ....++++||.+++||+++++++.+++.
T Consensus 271 ~G~~~v~~~~-~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~~~~gG~~l~~~~~~~~~ 344 (570)
T PRK04319 271 NGATNVIDGG-R--FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL---VKKYDLSSLRHILSVGEPLNPEVVRWGM 344 (570)
T ss_pred cCceEEEECC-C--CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc---cccCCcccceEEEEcccCCCHHHHHHHH
Confidence 9999988653 2 38999999999999999999999998887542211 1225688999999999999999999888
Q ss_pred HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEE
Q 037878 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860 (2280)
Q Consensus 781 ~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i 860 (2280)
+.+ +..+++.||+||++..+++.... . ....+++|+|+|+++++|+|+++. .+|+|+.|||+|
T Consensus 345 ~~~------g~~i~~~YG~tE~~~~~~~~~~~-~--------~~~~~~~G~p~~g~~~~i~d~~~~--~~~~g~~Gel~i 407 (570)
T PRK04319 345 KVF------GLPIHDNWWMTETGGIMIANYPA-M--------DIKPGSMGKPLPGIEAAIVDDQGN--ELPPNRMGNLAI 407 (570)
T ss_pred HHh------CCCeEeceeecccCCEEEecCCC-C--------CCCCCcCcCCCCCCEEEEECCCCC--CCCCCCceEEEE
Confidence 764 46799999999998765543211 0 122478999999999999998753 347999999999
Q ss_pred cC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccC
Q 037878 861 SS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTE 937 (2280)
Q Consensus 861 ~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~ 937 (2280)
+| |++++||+|+|+.|++.|. ++||+|||+++++ ||.++++||+||+||++|++|+|.|||++|.+||+
T Consensus 408 ~~~~~~~~~GY~~~~~~~~~~~~--------~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~ 479 (570)
T PRK04319 408 KKGWPSMMRGIWNNPEKYESYFA--------GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPA 479 (570)
T ss_pred cCCCChHHhHhcCCHHHhhhhhc--------CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCC
Confidence 87 8999999999999999885 3799999999997 99999999999999999999999999999999999
Q ss_pred CcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCC
Q 037878 938 HIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTT 1017 (2280)
Q Consensus 938 v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~ 1017 (2280)
|.+ ++|++.+++..+ +.+.+++. ..++....+++.+.+++.+.++++.+..|..++.+++||+|+
T Consensus 480 V~~---~~v~g~~~~~~g----------~~~~a~v~--~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~ 544 (570)
T PRK04319 480 VAE---AGVIGKPDPVRG----------EIIKAFVA--LRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTR 544 (570)
T ss_pred eee---cceecccCcCCc----------eEEEEEEE--ECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCC
Confidence 875 888888776433 22222222 233333334445566666655555555555666679999999
Q ss_pred CcccchHHHHHHhh
Q 037878 1018 SGKIKRFECLKQFV 1031 (2280)
Q Consensus 1018 sGKvdR~~L~~~~~ 1031 (2280)
+||++|++|+++..
T Consensus 545 ~GKv~r~~L~~~~~ 558 (570)
T PRK04319 545 SGKIMRRVLKAWEL 558 (570)
T ss_pred chhhhHHHHHHHHh
Confidence 99999999988753
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=585.43 Aligned_cols=515 Identities=20% Similarity=0.276 Sum_probs=382.1
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCC----ceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEG----VAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g----~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
.++.++++..+++. |+++|+.+.+.++ ...+.+||+||.++++++|++|.+. |+++||+|+++++|+++++
T Consensus 6 ~~~~~~l~~~a~~~--p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~---g~~~gd~V~~~~~n~~~~~ 80 (552)
T PRK09274 6 ANIARHLPRAAQER--PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAA---GIGRGMRAVLMVTPSLEFF 80 (552)
T ss_pred hhHHHHHHHHHHhC--CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCcHHHH
Confidence 35677787777663 7899987754321 1234899999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccc--cchhhccCCCCCCC-ccccccc-------
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIG--YHSAVRVGSWPNLP-WLHTDSW------- 614 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~--~~~~~~~~~~~~~~-~~~~~~~------- 614 (2280)
+++|||+++|++++|+++..+.++ +..+++++++++++++.. ....+......... .+..+..
T Consensus 81 ~~~la~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 153 (552)
T PRK09274 81 ALTFALFKAGAVPVLVDPGMGIKN-------LKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTT 153 (552)
T ss_pred HHHHHHHHcCeEEEEcCCCccHHH-------HHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCcc
Confidence 999999999999999999999888 889999999999998642 11111100000000 0000000
Q ss_pred cccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHH
Q 037878 615 VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
...................++++++|+|||||||.||||+++|+++.+.+......+++.++++.++.+|++|..++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~--- 230 (552)
T PRK09274 154 LATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP--- 230 (552)
T ss_pred HHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh---
Confidence 00000000011112233567899999999999999999999999999999888888999999999999998875543
Q ss_pred HHHHHHccceEEEeCcc---ccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCC
Q 037878 695 LFTAMVGGSTAILFSPL---TFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPV 771 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~---~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l 771 (2280)
..|+++++.+.. ....+|..+++.++++++|++.++|+++..+.+..... ..++++||.+++|||++
T Consensus 231 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-----~~~~~~lr~~~~gG~~~ 300 (552)
T PRK09274 231 -----ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-----GIKLPSLRRVISAGAPV 300 (552)
T ss_pred -----hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc-----CCCCchhhEEEecCCcC
Confidence 457777664321 11237899999999999999999999999888754332 24688999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCC-----
Q 037878 772 RQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS----- 846 (2280)
Q Consensus 772 ~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~----- 846 (2280)
++++.+++.+.+. .++.++|.||+||++.+++....................++|+|+|+++++|+|+++.
T Consensus 301 ~~~~~~~~~~~~~----~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~ 376 (552)
T PRK09274 301 PIAVIERFRAMLP----PDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEW 376 (552)
T ss_pred CHHHHHHHHHHcC----CCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccc
Confidence 9999999998863 2478999999999987655332110000000000111236899999999999996321
Q ss_pred --cccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeee
Q 037878 847 --EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNV 923 (2280)
Q Consensus 847 --~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI 923 (2280)
...++.|++|||+|+|+.++.||||+|+.|++.|..+ ..+.+||+|||+|+++ ||.++|+||+||+||++|+||
T Consensus 377 ~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~---~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v 453 (552)
T PRK09274 377 DDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPD---GQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTL 453 (552)
T ss_pred cccccCCCCCeeEEEEecCcccccccCChHHhhhhhccc---CCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEE
Confidence 2345799999999999999999999999999887532 1223599999999997 999999999999999999999
Q ss_pred chHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcce
Q 037878 924 YSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTV 1002 (2280)
Q Consensus 924 ~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~ 1002 (2280)
+|.|||++|.+||+|.+ |+|++++++. .+...++ ++..++... ..++.+.+++.+.. ++.+.
T Consensus 454 ~p~eIE~~l~~~p~V~~---~~v~~~~~~~-----------~~~~~~~--v~~~~~~~~~~~~l~~~l~~~l~~-~~~~~ 516 (552)
T PRK09274 454 YTIPCERIFNTHPGVKR---SALVGVGVPG-----------AQRPVLC--VELEPGVACSKSALYQELRALAAA-HPHTA 516 (552)
T ss_pred CcHHHHHHHHhCcccce---eEEEEeCCCC-----------CceEEEE--EEccCccccchHHHhhhhHHHHHh-cCCCc
Confidence 99999999999999976 8888876531 1122222 223333222 24577788887765 56666
Q ss_pred eEEEEecCCCccCC--CCcccchHHHHHHhhc
Q 037878 1003 ASVKLIKPRTMSKT--TSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1003 ~~~~lv~~~~lP~t--~sGKvdR~~L~~~~~~ 1032 (2280)
.+..++.+++||+| +||||||++|++++.+
T Consensus 517 ~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~ 548 (552)
T PRK09274 517 GIERFLIHPSFPVDIRHNAKIFREKLAVWAAK 548 (552)
T ss_pred ceeEEeccCCCCccccccccccHHHHHHHHHH
Confidence 66777778999999 7999999999887654
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=584.53 Aligned_cols=486 Identities=19% Similarity=0.238 Sum_probs=377.0
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
++.+++++.+++. |+++|+...+ +++||+||.++++++|+.|.+. |+++||+|+++++|++++++++||
T Consensus 50 ~~~~~~~~~a~~~--pd~~Al~~~~------~~~Ty~el~~~~~~la~~L~~~---gi~~gd~V~i~~~n~~~~~~~~la 118 (549)
T PRK07788 50 PFAGLVAHAARRA--PDRAALIDER------GTLTYAELDEQSNALARGLLAL---GVRAGDGVAVLARNHRGFVLALYA 118 (549)
T ss_pred hHHHHHHHHHHHC--CCceEEEECC------CceeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHH
Confidence 7889998888874 8999987422 5799999999999999999998 899999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCccccccc--c------cccc
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLHTDSW--V------KNSK 619 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~~~~~--~------~~~~ 619 (2280)
|+++|+++||+++..+.++ +..+++++++++++++.+....+... ....+..+..... . ....
T Consensus 119 ~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (549)
T PRK07788 119 AGKVGARIILLNTGFSGPQ-------LAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLD 191 (549)
T ss_pred HHhcCCEEEEeCCCCCHHH-------HHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHH
Confidence 9999999999999999888 88999999999999987654433211 0111111100000 0 0000
Q ss_pred ccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHH
Q 037878 620 NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699 (2280)
Q Consensus 620 ~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L 699 (2280)
+..........+..+++.++|+|||||||.||||+++|+++.+.+......+++..+++++..+|++|..++. .++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l 270 (549)
T PRK07788 192 DLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWA-HLTLAM 270 (549)
T ss_pred HHhcCCCCCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHH-HHHHHH
Confidence 0000001111223457889999999999999999999999999888888888889999999999999999984 567788
Q ss_pred HccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHH
Q 037878 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779 (2280)
Q Consensus 700 ~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~ 779 (2280)
..|+++++.. ..+|..+++.++++++|++.++|+++..+++..... ....++++||.+++|||++++++.++|
T Consensus 271 ~~G~~~v~~~----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~i~~gG~~l~~~~~~~~ 343 (549)
T PRK07788 271 ALGSTVVLRR----RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEV---LAKYDTSSLKIIFVSGSALSPELATRA 343 (549)
T ss_pred HhCCEEEECC----CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccc---cCCCCCCceeEEEEeCCCCCHHHHHHH
Confidence 9999988864 238999999999999999999999998887643321 112467899999999999999999999
Q ss_pred HHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEE
Q 037878 780 VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859 (2280)
Q Consensus 780 ~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~ 859 (2280)
.+.+ +..++|.||+||++..++...... ....+++|+|+++++++|+|+++ ..++.|+.|||+
T Consensus 344 ~~~~------~~~l~~~YG~TE~~~~~~~~~~~~---------~~~~~~vG~~~~~~~~~i~d~~~--~~~~~g~~Gel~ 406 (549)
T PRK07788 344 LEAF------GPVLYNLYGSTEVAFATIATPEDL---------AEAPGTVGRPPKGVTVKILDENG--NEVPRGVVGRIF 406 (549)
T ss_pred HHHh------CccceeccCcchhchhhccChhhh---------hhcCCCcccCCCCcEEEEECCCc--CCCCCCCeEEEE
Confidence 9875 356999999999886544321110 11246789999999999999875 344689999999
Q ss_pred EcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 860 i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
|+|++++.||+++++. + + .++||+|||+++++ ||.++|+||+||+||++|+||+|.|||++|.++|+|
T Consensus 407 v~g~~~~~gY~~~~~~--~-~--------~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V 475 (549)
T PRK07788 407 VGNGFPFEGYTDGRDK--Q-I--------IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDV 475 (549)
T ss_pred EeCCCccccccCCCcc--c-c--------cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCe
Confidence 9999999999998864 1 1 14899999999997 999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCC
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTT 1017 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~ 1017 (2280)
.+ |+|++.+++..+ +...++++ ..++. ...+++.+.++++++. +++|. .++.+++||+|+
T Consensus 476 ~~---~~v~~~~~~~~g----------~~~~a~vv--~~~~~~~~~~~l~~~~~~~l~~-~~~P~---~i~~v~~lP~t~ 536 (549)
T PRK07788 476 VE---AAVIGVDDEEFG----------QRLRAFVV--KAPGAALDEDAIKDYVRDNLAR-YKVPR---DVVFLDELPRNP 536 (549)
T ss_pred eE---EEEECCcCcccc----------cEEEEEEE--eCCCCCCCHHHHHHHHHHhhhc-CCCCc---EEEEeCCCCCCC
Confidence 75 888887765432 22222222 22232 2235677777777764 55543 444559999999
Q ss_pred CcccchHHHHH
Q 037878 1018 SGKIKRFECLK 1028 (2280)
Q Consensus 1018 sGKvdR~~L~~ 1028 (2280)
+||+||++|++
T Consensus 537 ~GKi~r~~L~~ 547 (549)
T PRK07788 537 TGKVLKRELRE 547 (549)
T ss_pred CcCEeHHHhhc
Confidence 99999998754
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=576.53 Aligned_cols=504 Identities=21% Similarity=0.303 Sum_probs=374.9
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
++.+.+.+.+++ +|+++|+...+.+ +.+||+||+++++++|+.|.+. |+++||+|+++++|++++++++||
T Consensus 15 ~~~~~l~~~a~~--~p~~~a~~~~~~~----~~~Ty~el~~~~~~~a~~L~~~---g~~~g~~V~i~~~~~~e~~~~~lA 85 (540)
T PRK05857 15 TVLDRVFEQARQ--QPEAIALRRCDGT----SALRYRELVAEVGGLAADLRAQ---SVSRGSRVLVISDNGPETYLSVLA 85 (540)
T ss_pred chHHHHHHHHhh--CCCcEEEeecCCC----ceeeHHHHHHHHHHHHHHHHHh---CcCCCCEEEEEcCCCHHHHHHHHH
Confidence 567777777776 4899998755432 4799999999999999999988 899999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCcccccccccc--cccccc-c
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLHTDSWVKN--SKNLLA-E 624 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~-~ 624 (2280)
|+++|++++|+++..+.++ +.++++.++++.++++.......... .....+.+..+..... ...... .
T Consensus 86 ~~~~G~v~v~l~~~~~~~~-------l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (540)
T PRK05857 86 CAKLGAIAVMADGNLPIAA-------IERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAA 158 (540)
T ss_pred HHHcCeEEEecCccCCHHH-------HHHHHHhcCCceEEEeccchhccccccccccccceeEeeccccccccccccccc
Confidence 9999999999999999888 88899999999999986542111100 0011111111110000 000000 0
Q ss_pred cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH----HcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 625 NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK----RYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 625 ~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
.........++++++++|||||||.||||++||+++.+....... .+....+++.+..+|++|++++. ..+.+++
T Consensus 159 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~ 237 (540)
T PRK05857 159 SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLM 237 (540)
T ss_pred ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhh
Confidence 001123346789999999999999999999999999876544322 23456778999999999999986 5678888
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|+++++.+ .++..+++.++++++|++..+|.++..+.+..... ..+++++|.+++||++++....+ +.
T Consensus 238 ~G~~~v~~~-----~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~-----~~~~~~lr~~~~gG~~~~~~~~~-~~ 306 (540)
T PRK05857 238 HGGLCVTGG-----ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA-----NATVPSLRLVGYGGSRAIAADVR-FI 306 (540)
T ss_pred cceeEEecC-----CChhHHHHHHHhcCcceEEeChHHHHHHHhccccC-----CCcCccceEEEEcCccCCchhHH-HH
Confidence 899877532 27889999999999999999999998887643222 25688999999999999887764 55
Q ss_pred HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCccc----CCCCCee
Q 037878 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI----GEPGKEG 856 (2280)
Q Consensus 781 ~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~----~p~G~~G 856 (2280)
+.+ ++++++.||+||++..+.......... .....+++|+|++|++++|+|+++.... ++.|+.|
T Consensus 307 ~~~------g~~i~~~YG~TE~~~~~~~~~~~~~~~-----~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~G 375 (540)
T PRK05857 307 EAT------GVRTAQVYGLSETGCTALCLPTDDGSI-----VKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFG 375 (540)
T ss_pred HHh------CCeeecccCCCcCCceeeecccccccc-----cccccCCcCcccCCcEEEEECccccCccccccCCCCCcc
Confidence 442 567999999999985433221111110 1123478999999999999998754322 2458899
Q ss_pred EEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhc
Q 037878 857 EVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESS 935 (2280)
Q Consensus 857 EL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~ 935 (2280)
||+|+|++++.||+++++.|++.|. ++||+|||+|+++ ||.++|+||.||+||++|+||+|.|||++|..|
T Consensus 376 el~v~g~~~~~GY~~~~~~t~~~~~--------~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~ 447 (540)
T PRK05857 376 TLWIKSPANMLGYWNNPERTAEVLI--------DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGV 447 (540)
T ss_pred eEEEeCcchhhhhhCCccchhhhcC--------CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhC
Confidence 9999999999999999999999885 3799999999997 999999999999999999999999999999999
Q ss_pred cCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccC
Q 037878 936 TEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSK 1015 (2280)
Q Consensus 936 p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~ 1015 (2280)
|+|.+ |+|++++++..+ ..+.++++...........++.+.+++.+.+.++..+.|..+..++++|+
T Consensus 448 ~~V~~---~~v~~~~~~~~~----------~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~ 514 (540)
T PRK05857 448 SGVRE---AACYEIPDEEFG----------ALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPR 514 (540)
T ss_pred CCeeE---EEEEecCccccc----------cceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCC
Confidence 99875 888888765332 22333333211101111234556666666555554455566666799999
Q ss_pred CCCcccchHHHHHHhhcC
Q 037878 1016 TTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1016 t~sGKvdR~~L~~~~~~~ 1033 (2280)
|++||+||++|++.+...
T Consensus 515 t~~GKi~r~~l~~~~~~~ 532 (540)
T PRK05857 515 TQSGKVMRASLAAAATAD 532 (540)
T ss_pred CCCcceeHHHHHHhhhhc
Confidence 999999999998886543
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=496.40 Aligned_cols=495 Identities=22% Similarity=0.308 Sum_probs=392.2
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.++|...|+++ ||++|++..+ +++||+||+++++++|..|+++ |+++||+|.+.+||..++++++
T Consensus 27 d~~l~d~L~~~A~~~--pdriAv~d~~------~~~sY~eLdqr~d~LAa~l~~l---Gi~~Gd~vlvQLpN~~ef~~~~ 95 (542)
T COG1021 27 DRTLTDILTDHAARY--PDRIAVIDGE------RRLSYAELDQRADRLAAGLRRL---GIKPGDTVLVQLPNVAEFYITF 95 (542)
T ss_pred CCcHHHHHHHHHhhc--CCceEEecCc------ccccHHHHHHHHHHHHHHHHhc---CCCCCCEEEEECCchHHHHHHH
Confidence 457889998888875 8999997432 5799999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh----h-c--cCCCCCCCccccccccccc--
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA----V-R--VGSWPNLPWLHTDSWVKNS-- 618 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~----~-~--~~~~~~~~~~~~~~~~~~~-- 618 (2280)
+|.+++|+++|.--|..-..+ |....+.+.++.+|.+...... + + ....+.+..+....-....
T Consensus 96 FALlrlGv~PVlALpsHr~~E-------i~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~ 168 (542)
T COG1021 96 FALLRLGVAPVLALPSHRASE-------LGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSV 168 (542)
T ss_pred HHHHHcCcchhhccchhhHHH-------HHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcch
Confidence 999999999987766543333 7788888888888876543210 0 0 1112222222211110000
Q ss_pred -c---ccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH-
Q 037878 619 -K---NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG- 693 (2280)
Q Consensus 619 -~---~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~- 693 (2280)
. ........+.++.+++++||...+-||||+||-+..||.....+++...+.+++++.+++++.+|..|.+.+.+
T Consensus 169 ~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssP 248 (542)
T COG1021 169 LEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSP 248 (542)
T ss_pred hhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCc
Confidence 0 00111122345667889999999999999999999999999999999999999999999999999999886533
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
..+..++.|+++|+.+. .+|.....+|+++++|+...+|.+...+++..+... .+|+|||.+-+||+.+++
T Consensus 249 G~LGv~~agG~VVla~~----psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~-----~~LsSLrllQVGGarl~~ 319 (542)
T COG1021 249 GALGVFLAGGTVVLAPD----PSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER-----ADLSSLRLLQVGGARLSA 319 (542)
T ss_pred chhheeeeccEEEECCC----CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc-----CCchheeEEeecCcccCH
Confidence 57888999999988653 388999999999999999999988888877665543 789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCc-eeecCCCceeeccccCCC-CCceEEEEcCCCCcccCC
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKP-IILDWQGRVCCGYVDQND-PDVDIRIVNPETSEEIGE 851 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~-~~~~~~g~~~~g~vG~p~-pg~~v~Ivd~~~~~~~~p 851 (2280)
++.+++...+ +|.+-+.+||.|--+.-+ ..++.+ ..+ .+-|+|+ |.-+++|+|.++ +.++
T Consensus 320 ~~Arrv~~~l------gC~LQQVFGMAEGLvnyT--RLDDp~E~i~--------~TQGrPlsP~DEvrvvD~dg--~pv~ 381 (542)
T COG1021 320 TLARRVPAVL------GCQLQQVFGMAEGLVNYT--RLDDPPEIII--------HTQGRPLSPDDEVRVVDADG--NPVA 381 (542)
T ss_pred HHHhhchhhh------CchHHHHhhhhhhhhccc--ccCCchHhee--------ecCCCcCCCcceeEEecCCC--CCCC
Confidence 9999998875 789999999999665433 222222 222 3345555 788999999886 3457
Q ss_pred CCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHH
Q 037878 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEK 930 (2280)
Q Consensus 852 ~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~ 930 (2280)
+||+|||..+||...+|||+-|+.++.+|.+ +|+|||||+++++ ||+|.+.||.||||+.+|++|-.+|||+
T Consensus 382 pGE~G~LltRGPYTirGYyrap~HNa~aF~a-------~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn 454 (542)
T COG1021 382 PGEVGELLTRGPYTIRGYYRAPEHNARAFDA-------DGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVEN 454 (542)
T ss_pred CCCcceeeecCCeeeeeeccCchhhhhccCc-------CCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHH
Confidence 9999999999999999999999999999976 5999999999997 9999999999999999999999999999
Q ss_pred HHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecC
Q 037878 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKP 1010 (2280)
Q Consensus 931 ~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~ 1010 (2280)
.|..||.|.+ |++|+.+|+.+|++ ..+++++. +......++..+++++-...+++|-. +..+
T Consensus 455 ~LL~HP~V~~---AAlVampDelLGEk---------sCAfiv~~---~~~~~~~qlr~~L~~~GlAa~K~PDr---ie~v 516 (542)
T COG1021 455 LLLRHPAVHD---AALVAMPDELLGEK---------SCAFIVVK---EPPLRAAQLRRFLRERGLAAFKLPDR---IEFV 516 (542)
T ss_pred HHhhCchhhh---hhhhcCchhhcCcc---------eeEEEEec---CCCCCHHHHHHHHHHcchhhhcCCcc---eeec
Confidence 9999999976 99999999988753 34444432 22233457777777776666777643 4445
Q ss_pred CCccCCCCcccchHHHHHHhhc
Q 037878 1011 RTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1011 ~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+.+|+|+-||||||+|++++..
T Consensus 517 ~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 517 DSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred ccCCCcccccccHHHHHHHhhh
Confidence 9999999999999999988654
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=576.82 Aligned_cols=485 Identities=23% Similarity=0.327 Sum_probs=373.3
Q ss_pred cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCC
Q 037878 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLT-SRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP 562 (2280)
Q Consensus 484 ~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~-~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~ 562 (2280)
.|+++|+...+ ++ .++||+||+++++++|+.|++ . |+++||+|+++++|+.++++++|||+++|++++|++|
T Consensus 52 ~~~~~a~~~~~-~~---~~~Ty~el~~~~~~lA~~L~~~~---G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p 124 (560)
T PLN02574 52 HNGDTALIDSS-TG---FSISYSELQPLVKSMAAGLYHVM---GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNP 124 (560)
T ss_pred cCCCCEEEECC-CC---CcccHHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCc
Confidence 47888887432 12 368999999999999999998 7 8999999999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccc---------ccccccc--cccccccCC
Q 037878 563 PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWV---------KNSKNLL--AENVVCFTE 631 (2280)
Q Consensus 563 ~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~ 631 (2280)
..+.++ +.++++++++++++++.+....+.... ...+..+... ....... .........
T Consensus 125 ~~~~~~-------l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (560)
T PLN02574 125 SSSLGE-------IKKRVVDCSVGLAFTSPENVEKLSPLG---VPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPV 194 (560)
T ss_pred ccCHHH-------HHHHHHhcCCEEEEECHHHHHHHHhcC---CcEEecCcccccccCccCcccHHHHhhcCCcccccCC
Confidence 998887 888999999999999865443332111 1111110000 0000000 001111223
Q ss_pred CCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH----HcC-CCCCcEEEEEcCchhhhhHHHHHHHHHHccceEE
Q 037878 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK----RYK-STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAI 706 (2280)
Q Consensus 632 ~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~----~~~-~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~v 706 (2280)
..++++++|+|||||||.||||++||+++.+.+..... .+. ...+++++.++|++|.+++...++.++..|++++
T Consensus 195 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v 274 (560)
T PLN02574 195 IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIV 274 (560)
T ss_pred CCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEE
Confidence 46789999999999999999999999999887765543 122 2357889999999999998777788888999988
Q ss_pred EeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCC
Q 037878 707 LFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786 (2280)
Q Consensus 707 l~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~ 786 (2280)
+.+. .++..+++.++++++|++..+|.++..+.+..... ...+++++|.+++||++++++++++|.+.+
T Consensus 275 ~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~--- 343 (560)
T PLN02574 275 VMRR----FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----CGEVLKSLKQVSCGAAPLSGKFIQDFVQTL--- 343 (560)
T ss_pred EecC----CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc----ccCccccceEEEEecccCCHHHHHHHHHHC---
Confidence 8753 38999999999999999999999998887543221 125688999999999999999999998875
Q ss_pred CCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcc
Q 037878 787 GLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAG 866 (2280)
Q Consensus 787 g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~ 866 (2280)
+++.+++.||+||++.+++....... ....+++|+|+|+++++|+|++++. .++.|+.|||+|+|++++
T Consensus 344 --~~~~v~~~YG~tE~~~~~~~~~~~~~--------~~~~~~vG~~~~~~~v~i~d~~~g~-~~~~g~~Gei~v~g~~~~ 412 (560)
T PLN02574 344 --PHVDFIQGYGMTESTAVGTRGFNTEK--------LSKYSSVGLLAPNMQAKVVDWSTGC-LLPPGNCGELWIQGPGVM 412 (560)
T ss_pred --CCCcEEecccccccCceeecCCCccc--------cCCCCceeeeCCCcEEEEEeCCCCc-CCCCCCCeEEEEECcchh
Confidence 46789999999999866543221111 1124678999999999999976554 457999999999999999
Q ss_pred cccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeE
Q 037878 867 IGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCA 945 (2280)
Q Consensus 867 ~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aa 945 (2280)
.||+++|+.|++.|.. +|||+|||+|+++ ||.++++||+||+||++|+||+|.|||++|.+||+|.+ ++
T Consensus 413 ~GY~~~~~~t~~~~~~-------~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~---~~ 482 (560)
T PLN02574 413 KGYLNNPKATQSTIDK-------DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIID---AA 482 (560)
T ss_pred hhhcCChhHhhhhccC-------CCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcce---EE
Confidence 9999999999988853 4899999999997 99999999999999999999999999999999999975 88
Q ss_pred EEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchH
Q 037878 946 VIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRF 1024 (2280)
Q Consensus 946 Vv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~ 1024 (2280)
|++++++..+ +....+++ ..++.. ..+++.+.+++++.. ++.| ..+..+++||+|++|||+|+
T Consensus 483 v~~~~~~~~g----------~~~~a~v~--~~~~~~~~~~~l~~~~~~~l~~-~~~p---~~v~~v~~iP~t~~GKi~r~ 546 (560)
T PLN02574 483 VTAVPDKECG----------EIPVAFVV--RRQGSTLSQEAVINYVAKQVAP-YKKV---RKVVFVQSIPKSPAGKILRR 546 (560)
T ss_pred EEccccCCCC----------cceEEEEE--eCCCCCCCHHHHHHHHHHhccC-cccC---cEEEEeeccCCCCcchhhHH
Confidence 8888765322 22222222 222222 235667777776665 3333 34445589999999999999
Q ss_pred HHHHHhhcC
Q 037878 1025 ECLKQFVDG 1033 (2280)
Q Consensus 1025 ~L~~~~~~~ 1033 (2280)
+|++.+.+.
T Consensus 547 ~L~~~~~~~ 555 (560)
T PLN02574 547 ELKRSLTNS 555 (560)
T ss_pred HHHHHHhhc
Confidence 999887543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=572.01 Aligned_cols=506 Identities=24% Similarity=0.317 Sum_probs=387.4
Q ss_pred CCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhH
Q 037878 464 EFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDF 543 (2280)
Q Consensus 464 ~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~ 543 (2280)
.+++..++.+++..++.+. |+++|+...+ ++ +++||.||.++++++|+.|.+. |+++||+|+++++|+.++
T Consensus 18 ~~~~~~~~~~~l~~~~~~~--~~~~a~~~~~-~~---~~~ty~el~~~~~~la~~L~~~---g~~~gd~V~i~~~~~~~~ 88 (537)
T PLN02246 18 YIPNHLPLHDYCFERLSEF--SDRPCLIDGA-TG---RVYTYADVELLSRRVAAGLHKL---GIRQGDVVMLLLPNCPEF 88 (537)
T ss_pred CCCCCCcHHHHHHHHHHhC--CCCeEEEecC-CC---ceeeHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCChHH
Confidence 4566778999998877763 8899986432 22 5799999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCcccccccccc---cc
Q 037878 544 VDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHTDSWVKN---SK 619 (2280)
Q Consensus 544 ~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~ 619 (2280)
+++++||+++|++++|+++..+.++ +..+++.+++++++++......+.... ......+..+..... ..
T Consensus 89 ~~~~la~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (537)
T PLN02246 89 VLAFLGASRRGAVTTTANPFYTPAE-------IAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161 (537)
T ss_pred HHHHHHHHHcCEEEecCCCCCCHHH-------HHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHH
Confidence 9999999999999999999999887 889999999999999765543321110 011111111110000 00
Q ss_pred ccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH----HcCCCCCcEEEEEcCchhhhhHHH
Q 037878 620 NLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK----RYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 620 ~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
... .....+.....+++++|++|||||||.||||+++|+++...+..... .+++.++|++++.+|++|.+++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~ 241 (537)
T PLN02246 162 ELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNS 241 (537)
T ss_pred HHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHH
Confidence 000 00111122346789999999999999999999999999887765433 467889999999999999999877
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
.++.++..|+++++.++ .++..+++.++++++|++..+|.++..+.+.... ...+++++|.+++||+++++
T Consensus 242 ~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~lr~~~~gg~~l~~ 312 (537)
T PLN02246 242 VLLCGLRVGAAILIMPK----FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV-----EKYDLSSIRMVLSGAAPLGK 312 (537)
T ss_pred HHHHHHhcCCEEEEeCC----CCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc-----cccCccceeEEEEecCcCCH
Confidence 88899999999998764 2789999999999999999999988877643221 12457899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccC-CCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCC
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYG-QGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~-~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~ 852 (2280)
++.+.+.+.+ ++..+++.||+||++.+++.... ...+. ....+++|+|+++++++|+|++++. .++.
T Consensus 313 ~~~~~~~~~~-----~~~~~~~~YG~tE~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~-~~~~ 380 (537)
T PLN02246 313 ELEDAFRAKL-----PNAVLGQGYGMTEAGPVLAMCLAFAKEPF------PVKSGSCGTVVRNAELKIVDPETGA-SLPR 380 (537)
T ss_pred HHHHHHHHHc-----CCCeEeccccccccCcccccccccCCCCc------cccCCccccccCCcEEEEecCCCCC-cCCC
Confidence 9999999875 46789999999999876543211 11110 1123678999999999999976554 4579
Q ss_pred CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 853 G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
|+.|||+|+|++++.||+++|+.|+++|.. ++||+|||+|+++ ||.++|+||+||+||++|+||+|.|||++
T Consensus 381 g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~-------~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~ 453 (537)
T PLN02246 381 NQPGEICIRGPQIMKGYLNDPEATANTIDK-------DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAL 453 (537)
T ss_pred CCceEEEEECCchhccccCCchhhhhcccC-------CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHH
Confidence 999999999999999999999999888743 4899999999997 99999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcceeEEEEecC
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTVASVKLIKP 1010 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~lv~~ 1010 (2280)
|.++|+|.+ |+|++.+++..+ .....++. ..++... ..++.+.+++++. ..+.|..++.+
T Consensus 454 l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v~--~~~~~~~~~~~l~~~l~~~l~----~~~~p~~i~~~ 514 (537)
T PLN02246 454 LISHPSIAD---AAVVPMKDEVAG----------EVPVAFVV--RSNGSEITEDEIKQFVAKQVV----FYKRIHKVFFV 514 (537)
T ss_pred HHhCCCeeE---EEEEcccCccCC----------ceeEEEEE--eCCCCCCCHHHHHHHHHhhCc----CccccceEEEe
Confidence 999999865 888887665322 22222222 2223222 2445555555444 33444455566
Q ss_pred CCccCCCCcccchHHHHHHhhc
Q 037878 1011 RTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1011 ~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
++||+|++||++|++|++++.+
T Consensus 515 ~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 515 DSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ccCCCCCcchhhHHHHHHHHhc
Confidence 9999999999999999887643
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=574.68 Aligned_cols=444 Identities=17% Similarity=0.191 Sum_probs=342.1
Q ss_pred CCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCC-----------C
Q 037878 463 VEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPG-----------D 531 (2280)
Q Consensus 463 ~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~G-----------d 531 (2280)
.++....++.+++++.+++. |+++|+.+.+ +|..++.+||+||.++++++|++|.+....|+++| |
T Consensus 55 ~~~~~~~~l~~~l~~~~~~~--p~~~Al~~~~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d 131 (746)
T PTZ00342 55 SSLYVYKHIMKLLLEKYKLN--NNKIAIVEHS-CGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFK 131 (746)
T ss_pred ccccccchHHHHHHHHHhhc--CCceeEeccC-CCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCcccccccccccc
Confidence 45666789999999888774 8999997532 23334789999999999999999986201289998 9
Q ss_pred EEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCc-
Q 037878 532 RVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPW- 608 (2280)
Q Consensus 532 ~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~- 608 (2280)
+|+|+++|++||+++++||+++|++.||+++..+.+. +.++++++++++++++.+..+.+... ..+.+..
T Consensus 132 ~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~e-------l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~i 204 (746)
T PTZ00342 132 LLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDV-------IVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKL 204 (746)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHH-------HHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEE
Confidence 9999999999999999999999999999999999888 89999999999999976543322210 1111111
Q ss_pred ccccccccc-------------------------------------------------------------cc--------
Q 037878 609 LHTDSWVKN-------------------------------------------------------------SK-------- 619 (2280)
Q Consensus 609 ~~~~~~~~~-------------------------------------------------------------~~-------- 619 (2280)
+..+..... ..
T Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 284 (746)
T PTZ00342 205 IILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIIL 284 (746)
T ss_pred EEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEE
Confidence 111100000 00
Q ss_pred --ccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHc--CCCCCcEEEEEcCchhhhhHHH
Q 037878 620 --NLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY--KSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 620 --~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
+.. ...........++|+|+|+|||||||.||||++||+|+++.+....... .....+++++++|++|++++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~ 364 (746)
T PTZ00342 285 FDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI 364 (746)
T ss_pred HHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH
Confidence 000 0000112245689999999999999999999999999998887654432 2335689999999999999864
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcc----cccc----------------
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS----KDKV---------------- 753 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----~~~~---------------- 753 (2280)
.+.+++.|+++++.+. ++..+++.+.++++|++.++|.+++.+.+..... ....
T Consensus 365 -~~~~l~~G~~i~~~~~-----~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~ 438 (746)
T PTZ00342 365 -AYLSFMLGGTINIWSK-----DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNN 438 (746)
T ss_pred -HHHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc
Confidence 5677899999888652 7889999999999999999999998887542211 0000
Q ss_pred -----------------cccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCce
Q 037878 754 -----------------RSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPI 816 (2280)
Q Consensus 754 -----------------~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~ 816 (2280)
...-.++||.+++||+++++++.++|...+ ++.+.++||+||++..++.....
T Consensus 439 ~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~------g~~i~~gYGlTEt~~~~~~~~~~---- 508 (746)
T PTZ00342 439 GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL------NVNYYQGYGLTETTGPIFVQHAD---- 508 (746)
T ss_pred CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc------CCCEEEeeccCcccceeeeccCC----
Confidence 000126899999999999999999998764 56799999999998765543211
Q ss_pred eecCCCceeeccccCCC-CCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeec
Q 037878 817 ILDWQGRVCCGYVDQND-PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRT 895 (2280)
Q Consensus 817 ~~~~~g~~~~g~vG~p~-pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrT 895 (2280)
....+++|+|+ |+++++|+|.++.... +.++.|||+|+||+++.|||++|+.|+++|.. +|||||
T Consensus 509 ------~~~~gsvG~p~~pg~e~ki~d~~~~~~~-~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~-------dGW~~T 574 (746)
T PTZ00342 509 ------DNNTESIGGPISPNTKYKVRTWETYKAT-DTLPKGELLIKSDSIFSGYFLEKEQTKNAFTE-------DGYFKT 574 (746)
T ss_pred ------CCCcccccCcCCCcEEEEEecccccccC-CCCCceEEEEecCcccccccCChhhhhhhcCc-------CCcccC
Confidence 12357899998 9999999985433222 34567999999999999999999999999964 489999
Q ss_pred CcEEEEE-CCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCcCCceeEEEec
Q 037878 896 GDLGRII-DGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHIRPGCCAVIGV 949 (2280)
Q Consensus 896 GDlgr~~-dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~ 949 (2280)
||+|+++ ||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+ |+|+|.
T Consensus 575 GDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~---~~VvG~ 627 (746)
T PTZ00342 575 GDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINF---CVVYGD 627 (746)
T ss_pred CcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccE---EEEEcc
Confidence 9999997 9999999999999997 7999999999999999999975 888874
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=574.12 Aligned_cols=528 Identities=31% Similarity=0.541 Sum_probs=380.5
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCC---ceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEG---VAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g---~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
++.+++++++.. +|+++|+.+.+.++ ...+++||+||.++++++|+.|.+. | ++||+|+++++|+++++++
T Consensus 2 s~~~~l~~~a~~--~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~---g-~~gd~V~l~~~n~~~~~~~ 75 (578)
T PRK05850 2 SVPSLLRERASL--QPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRH---G-STGDRAVILAPQGLEYIVA 75 (578)
T ss_pred cHHHHHHHHHhc--CCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHh---C-CCCCEEEEEcCCcccHHHH
Confidence 567788888876 48999998754211 1136899999999999999999988 7 6899999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCC---ccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC----CCCCCC-ccccccccccc
Q 037878 547 FFGCMRAKVLPVPVLPPD---PLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG----SWPNLP-WLHTDSWVKNS 618 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~---p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~ 618 (2280)
+|||+++|+++||+++.. +.++ +.++++++++++++++......+... ...... ....+.. .
T Consensus 76 ~lA~~~~G~v~vpl~~~~~~~~~~~-------l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 145 (578)
T PRK05850 76 FLGALQAGLIAVPLSVPQGGAHDER-------VSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-D-- 145 (578)
T ss_pred HHHHHHcCceEEecCCCCccchHHH-------HHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-c--
Confidence 999999999999999754 3444 88999999999999987654433210 000000 1111110 0
Q ss_pred cccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHc-C-----CCCCcEEEEEcCchhhhhHH
Q 037878 619 KNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY-K-----STSKTVLVSWLPQYHDMGLI 692 (2280)
Q Consensus 619 ~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~-~-----~~~~d~~l~~~pl~h~~gl~ 692 (2280)
.............++|+++|+|||||||.||||+++|+++.+.+......+ . ...++++++++|++|+++++
T Consensus 146 --~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 223 (578)
T PRK05850 146 --LDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLV 223 (578)
T ss_pred --cccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhH
Confidence 000000112234678999999999999999999999999988776654432 2 35678999999999999998
Q ss_pred HHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCC
Q 037878 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVR 772 (2280)
Q Consensus 693 ~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~ 772 (2280)
..++.+++.|+++++.++..+..+|..|++.++++++++...++..+..+....... .....+++++|.+++||++++
T Consensus 224 ~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~lr~~~~gg~~~~ 301 (578)
T PRK05850 224 LGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAVRKTSDD--DMAGLDLGGVLGIISGSERVH 301 (578)
T ss_pred HHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEeCCcHHHHHHHHhcchh--hhcCcchhhheeEEECcCCCC
Confidence 889999999999999876555568999999999999998766665555444322111 112246789999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceee--c----CCCc---------eeeccccCCCCCce
Q 037878 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIIL--D----WQGR---------VCCGYVDQNDPDVD 837 (2280)
Q Consensus 773 ~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~--~----~~g~---------~~~g~vG~p~pg~~ 837 (2280)
+++.++|.+.++..|+++..+.+.||+||++..++.......+... + ..|. .....+|.|. +.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~ 380 (578)
T PRK05850 302 PATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPT 380 (578)
T ss_pred HHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCE
Confidence 9999999998876666677899999999987655432211110000 0 0010 1122456664 689
Q ss_pred EEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccC----CCCCceeecCcEEEEECCeEEEEecCC
Q 037878 838 IRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQN----NRGRKYTRTGDLGRIIDGKFFITGRIK 913 (2280)
Q Consensus 838 v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~----~~~~~~yrTGDlgr~~dG~l~~~GR~d 913 (2280)
++|+|++++.. ++.|+.|||+|+|++++.||+++|+.|+++|..+... ...++||+|||+|+++||+++|+||+|
T Consensus 381 ~~ivd~~~~~~-~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~~G~l~~~GR~~ 459 (578)
T PRK05850 381 VRIVDPDTCIE-CPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISEGELFIVGRIK 459 (578)
T ss_pred EEEEcCCCCcC-CCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEECCEEEEEcccc
Confidence 99999775544 5799999999999999999999999999999642211 123579999999999999999999999
Q ss_pred CeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-------HHH
Q 037878 914 DLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-------KDV 986 (2280)
Q Consensus 914 d~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-------~~l 986 (2280)
|+||++|+||+|.|||++|.+||.+. ++|++++++ .+ +.+.+++.. .++...+ .++
T Consensus 460 d~i~~~G~~i~p~eIE~~l~~~~~~~----~~v~~v~~~-~~----------~~~~a~v~~--~~~~~~~~~~~~~~~~l 522 (578)
T PRK05850 460 DLLIVDGRNHYPDDIEATIQEITGGR----VAAISVPDD-GT----------EKLVAIIEL--KKRGDSDEEAMDRLRTV 522 (578)
T ss_pred cEEEECCeecCHHHHHHHHHHhcCCc----EEEEEecCC-Cc----------eEEEEEEEe--ccccCcchhhhhhHHHH
Confidence 99999999999999999999998752 677877664 11 222222222 2222111 123
Q ss_pred HHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCCCC
Q 037878 987 IENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLN 1036 (2280)
Q Consensus 987 ~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~ 1036 (2280)
.+.+.+.+..........+.++..++||+|++|||+|++|+++|.+..+.
T Consensus 523 ~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~~~~ 572 (578)
T PRK05850 523 KREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDEFT 572 (578)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcCCcc
Confidence 33444444432222223345555578999999999999999998776544
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=569.80 Aligned_cols=500 Identities=23% Similarity=0.308 Sum_probs=385.6
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++.++. +|+++|+.+.+.+....+.+||+||.++++++|+.|.+. |+++||+|+++++|++++++++|
T Consensus 24 ~~l~~~l~~~a~~--~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~---g~~~g~~Val~~~n~~e~~~~~l 98 (547)
T PRK13295 24 RTINDDLDACVAS--CPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARL---GVGRGDVVSCQLPNWWEFTVLYL 98 (547)
T ss_pred CCHHHHHHHHHHH--CCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCChHHHHHHH
Confidence 4788999888876 489999987543323347899999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch-----hhcc--CCCCCCCcc-ccc-----ccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS-----AVRV--GSWPNLPWL-HTD-----SWV 615 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~-----~~~~--~~~~~~~~~-~~~-----~~~ 615 (2280)
||+++|++++|+++..+.++ +.++++++++++++++..... .... ...+....+ ..+ ++.
T Consensus 99 a~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (547)
T PRK13295 99 ACSRIGAVLNPLMPIFRERE-------LSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFE 171 (547)
T ss_pred HHHhcCcEEeccccccCHHH-------HHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHH
Confidence 99999999999999999888 889999999999999765311 0000 001111100 000 000
Q ss_pred c---cc-ccc-cc-ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhh
Q 037878 616 K---NS-KNL-LA-ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDM 689 (2280)
Q Consensus 616 ~---~~-~~~-~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 689 (2280)
. .. ... .. ..........++++++|+|||||||.||||+++|+++...+......+++.+++++++++|++|..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~ 251 (547)
T PRK13295 172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQT 251 (547)
T ss_pred HHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 0 00 000 00 000111234678999999999999999999999999999988888888999999999999999999
Q ss_pred hHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecC
Q 037878 690 GLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAE 769 (2280)
Q Consensus 690 gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe 769 (2280)
+++..++.++..|+++++.+. .++..+++.++++++|++.++|.++..+....... ..++++||.+++||+
T Consensus 252 g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~~~~~G~ 322 (547)
T PRK13295 252 GFMYGLMMPVMLGATAVLQDI----WDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES-----GRPVSSLRTFLCAGA 322 (547)
T ss_pred hHHHHHHHHHHcCCeEEeCCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc-----CCCcccceEEEEecC
Confidence 988889999999999988652 38899999999999999999998888776543222 256789999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCccc
Q 037878 770 PVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849 (2280)
Q Consensus 770 ~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~ 849 (2280)
++++++.+++.+.+ ++.++|.||+||++.+++....... ....+++|+|+++++++|+|+++ ..
T Consensus 323 ~l~~~~~~~~~~~~------~~~~~~~YG~TE~~~~~~~~~~~~~--------~~~~~~~G~~~~~~~v~i~d~~~--~~ 386 (547)
T PRK13295 323 PIPGALVERARAAL------GAKIVSAWGMTENGAVTLTKLDDPD--------ERASTTDGCPLPGVEVRVVDADG--AP 386 (547)
T ss_pred CCCHHHHHHHHHHh------CCCeEEeccCCCCCCeeeccCCCcc--------hhccCccccccCCcEEEEECCCC--CC
Confidence 99999999998875 4679999999999876543321110 11235689999999999999875 34
Q ss_pred CCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHH
Q 037878 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADV 928 (2280)
Q Consensus 850 ~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EI 928 (2280)
++.|+.|||+|+|++++.||+++|+.|++. .+|||+|||+|+++ ||.+++.||+||+||++|+||+|.||
T Consensus 387 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~---------~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~I 457 (547)
T PRK13295 387 LPAGQIGRLQVRGCSNFGGYLKRPQLNGTD---------ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEI 457 (547)
T ss_pred CCCCCCCeEEEEcCcccccccCCccccccC---------CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHH
Confidence 579999999999999999999999988764 14799999999996 99999999999999999999999999
Q ss_pred HHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHHHHHHhcCcceeEEEE
Q 037878 929 EKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKL 1007 (2280)
Q Consensus 929 E~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~l 1007 (2280)
|++|.++++|.+ ++|++++++..+ ..+.++++ ..++...+ .++.+.+++. .++..+.|..+
T Consensus 458 E~~l~~~~~v~~---~~v~~~~~~~~g----------~~~~~~v~--~~~~~~~~~~~l~~~~~~~---~l~~~~~P~~i 519 (547)
T PRK13295 458 EALLYRHPAIAQ---VAIVAYPDERLG----------ERACAFVV--PRPGQSLDFEEMVEFLKAQ---KVAKQYIPERL 519 (547)
T ss_pred HHHHHhCCCeee---EEEEeeecCCCC----------cEEEEEEE--eCCCCCCCHHHHHHHHHhc---cCccccCCcEE
Confidence 999999999875 888887765322 22222222 23232222 4455555542 23333344556
Q ss_pred ecCCCccCCCCcccchHHHHHHhhc
Q 037878 1008 IKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1008 v~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+.+++||+|.+||++|++|++++.+
T Consensus 520 ~~v~~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 520 VVRDALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred EEeccCCCCCCccccHHHHHHHHhc
Confidence 6669999999999999999887654
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-53 Score=566.16 Aligned_cols=509 Identities=22% Similarity=0.337 Sum_probs=389.1
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
-+...++.+++++++++ +|+++|+.+.++ .+.+||+||.++++++|+.|.+. |+++||+|+++++|+++++
T Consensus 12 ~~~~~~l~~~l~~~a~~--~p~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~---gv~~gd~V~i~~~n~~~~~ 82 (534)
T PRK05852 12 SDFGPRIADLVEVAATR--LPEAPALVVTAD----RIAISYRDLARLVDDLAGQLTRS---GLLPGDRVALRMGSNAEFV 82 (534)
T ss_pred hhhcccHHHHHHHHHHh--CCCCcEEEecCC----CCcccHHHHHHHHHHHHHHHHhc---CCCCCCEEEEECCCcHHHH
Confidence 35567899999988876 489999876432 14799999999999999999988 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCc-ccc--cc------cc
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPW-LHT--DS------WV 615 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~--~~------~~ 615 (2280)
+++|||+++|++++|+++..+.++ +.+++++++++.++++................. +.. .. +.
T Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (534)
T PRK05852 83 VALLAASRADLVVVPLDPALPIAE-------QRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLS 155 (534)
T ss_pred HHHHHHHHcCcEEeecCCCCCcHH-------HHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccc
Confidence 999999999999999999998887 889999999999998754221111000000000 000 00 00
Q ss_pred ccccccc-cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHH
Q 037878 616 KNSKNLL-AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 616 ~~~~~~~-~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
....... ...........++|.++|+|||||||.||||+++|+++.+.+......+++..+|++++++|++|..+++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 235 (534)
T PRK05852 156 VHLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAA 235 (534)
T ss_pred cccccccCCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHH
Confidence 0000000 000001111235788999999999999999999999999999888888899999999999999999999888
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHH
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQT 774 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~ 774 (2280)
++.++..|+++++.+...+ ++..+++.++++++|++..+|.++..+.+...... ...+++++|.+.++|++++++
T Consensus 236 ~~~~l~~g~~~~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~~~~~~lr~i~~~G~~~~~~ 310 (534)
T PRK05852 236 LLATLASGGAVLLPARGRF--SAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP---SGRKPAALRFIRSCSAPLTAE 310 (534)
T ss_pred HHHHHhcCCeEEeCCCcCc--CHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc---ccccCCCeeEEEECCCCCCHH
Confidence 9999999999887554443 78899999999999999999999988876543221 113568999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCC
Q 037878 775 TVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854 (2280)
Q Consensus 775 l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~ 854 (2280)
+.+++.+.+ +..+++.||+||++..++......... ........|.+|. .+|++++|+|+++ ..+++|+
T Consensus 311 ~~~~~~~~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~--~~~~~~~~g~~g~-~~g~~~~i~d~~g--~~~~~g~ 379 (534)
T PRK05852 311 TAQALQTEF------AAPVVCAFGMTEATHQVTTTQIEGIGQ--TENPVVSTGLVGR-STGAQIRIVGSDG--LPLPAGA 379 (534)
T ss_pred HHHHHHHHh------CCChhhccCccccchhhhcCCcccccc--ccCcccccccCCC-CCCCeEEEECCCC--CCCCCCC
Confidence 999998875 467999999999987655322110000 0001112345555 6999999999876 3457999
Q ss_pred eeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHH
Q 037878 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVE 933 (2280)
Q Consensus 855 ~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~ 933 (2280)
.|||+|+|+.+++||+++|+.|++.|. ++||||||+++++ ||++++.||+||+||++|.+|+|.|||++|.
T Consensus 380 ~Gel~v~g~~v~~gY~~~~~~t~~~~~--------~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~ 451 (534)
T PRK05852 380 VGEVWLRGTTVVRGYLGDPTITAANFT--------DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLA 451 (534)
T ss_pred ceEEEEecCcccchhcCCcccchhhhc--------CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHH
Confidence 999999999999999999999999885 3799999999997 9999999999999999999999999999999
Q ss_pred hccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCC
Q 037878 934 SSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRT 1012 (2280)
Q Consensus 934 ~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~ 1012 (2280)
++|+|.+ |+|++++++..+ ..+..+++. .++. ....++.++++++|+. +++| ..++.+++
T Consensus 452 ~~~~V~~---~~v~g~~~~~~g----------~~~~~~vv~--~~~~~~~~~~i~~~~~~~l~~-~~~P---~~i~~v~~ 512 (534)
T PRK05852 452 SHPNVME---AAVFGVPDQLYG----------EAVAAVIVP--RESAPPTAEELVQFCRERLAA-FEIP---ASFQEASG 512 (534)
T ss_pred hCCCeee---EEEEecCCcCcC----------ceEEEEEEE--CCCCCCCHHHHHHHHHHhccc-ccCC---eEEEEhhh
Confidence 9999975 899988765322 222233322 2222 2335677777777654 5444 34556699
Q ss_pred ccCCCCcccchHHHHHHhhc
Q 037878 1013 MSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1013 lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
||+|++||++|++|+++|.+
T Consensus 513 iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 513 LPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred cCCCCCccccHHHHHHHhcc
Confidence 99999999999999998743
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-53 Score=570.85 Aligned_cols=536 Identities=30% Similarity=0.462 Sum_probs=399.9
Q ss_pred CCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHh
Q 037878 463 VEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLD 542 (2280)
Q Consensus 463 ~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e 542 (2280)
.++++..++.++++..++.. ++..+ .+.+++..+.+||.||+++++++|++|+++ |+++||+|+++++|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~---gi~~gd~V~l~~~n~~~ 86 (579)
T PRK09192 15 RRYADFPTLVEALDYAALGE--AGMNF---YDRRGQLEEALPYQTLRARAEAGARRLLAL---GLKPGDRVALIAETDGD 86 (579)
T ss_pred ccccchhhHHHHHHHhhccC--CceEE---EecCCCEEEEecHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCchh
Confidence 34777889999999888763 43333 243444457899999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCccccccccccccc
Q 037878 543 FVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLHTDSWVKNSKN 620 (2280)
Q Consensus 543 ~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 620 (2280)
++++++||+++|++++|+++..+........+++..+++.+++++++++......+... ............+...
T Consensus 87 ~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 163 (579)
T PRK09192 87 FVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSHAWFKAL--- 163 (579)
T ss_pred HHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccceeehhhhccc---
Confidence 99999999999999999987654322112234588999999999999987654332211 0011111111111100
Q ss_pred cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH-HcCCCCCcEEEEEcCchhhhhHHHHHHHHH
Q 037878 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK-RYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699 (2280)
Q Consensus 621 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L 699 (2280)
...........+++++||+|||||||.||||+++|+++...+..... .+++.++|+++.++|++|+++++..++.++
T Consensus 164 --~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l 241 (579)
T PRK09192 164 --PEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPV 241 (579)
T ss_pred --CCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHH
Confidence 00111122356789999999999999999999999999998887777 788999999999999999999988888889
Q ss_pred HccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHH
Q 037878 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779 (2280)
Q Consensus 700 ~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~ 779 (2280)
..|+++++.+...+..+|..+++.+.++++++...+|..+..+....... .....+++++|.+++||+++++++.++|
T Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~--~~~~~~l~~lr~~~~gG~~l~~~~~~~~ 319 (579)
T PRK09192 242 ATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK--DLAELDLSCWRVAGIGADMIRPDVLHQF 319 (579)
T ss_pred HhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc--cccccchhhhheeEecCccCCHHHHHHH
Confidence 99999877765555558999999999999999888877666655432211 1123568899999999999999999999
Q ss_pred HHHhcCCCCCCcccccccCccccccceecccCCCCce--eec----------------CCCceeeccccCCCCCceEEEE
Q 037878 780 VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPI--ILD----------------WQGRVCCGYVDQNDPDVDIRIV 841 (2280)
Q Consensus 780 ~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~--~~~----------------~~g~~~~g~vG~p~pg~~v~Iv 841 (2280)
.+.+...|.+...+++.||+||++..++......... ..+ .......+++|.|+|+++++|+
T Consensus 320 ~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~ 399 (579)
T PRK09192 320 AEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIR 399 (579)
T ss_pred HHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEE
Confidence 9887544444456999999999987665432211000 000 0001124678999999999999
Q ss_pred cCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCe
Q 037878 842 NPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGR 921 (2280)
Q Consensus 842 d~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~ 921 (2280)
|+++ ..++.|+.|||+|+|+++++||+++ +.+.+.|.. ++||+|||+|+++||+++|+||+||+||++|+
T Consensus 400 d~~~--~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~-------dgw~~TGDlg~~~~G~l~~~GR~dd~i~~~G~ 469 (579)
T PRK09192 400 NEAG--MPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAA-------DGWLDTGDLGYLLDGYLYITGRAKDLIIINGR 469 (579)
T ss_pred CCCC--CCCCCCCEEEEEecCCchhhhhcCC-ccccccccC-------CceeeccceeeEECCEEEEEeccccEEEECCC
Confidence 9774 3457899999999999999999999 566666643 48999999999999999999999999999999
Q ss_pred eechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCc
Q 037878 922 NVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGV 1000 (2280)
Q Consensus 922 rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~ 1000 (2280)
||+|.|||++|++||+|.. ..|+|++++++. .. ..+++++..++. ...+++.+.+++.+...++.
T Consensus 470 ~v~p~eIE~~l~~~p~V~~-~~~~v~~~~~~~-----------~~--~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~ 535 (579)
T PRK09192 470 NIWPQDIEWIAEQEPELRS-GDAAAFSIAQEN-----------GE--KIVLLVQCRISDEERRGQLIHALAALVRSEFGV 535 (579)
T ss_pred ccCHHHHHHHHHhcCCccC-CcEEEEEeccCC-----------Ce--eEEEEEEecCCChHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999962 247788776541 11 222222222222 22356788888888766666
Q ss_pred ceeEEEEecCCCccCCCCcccchHHHHHHhhcCCCCCC
Q 037878 1001 TVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTV 1038 (2280)
Q Consensus 1001 ~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~~l 1038 (2280)
+.. +.++..++||+|++||++|++|++++.++.+..+
T Consensus 536 ~~~-i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~~~~ 572 (579)
T PRK09192 536 EAA-VELVPPHSLPRTSSGKLSRAKAKKRYLSGAFASL 572 (579)
T ss_pred Cce-EEEeCCCCcCCCCCcchhHHHHHHHHHcCCCCcc
Confidence 543 4555557899999999999999999988876543
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=569.38 Aligned_cols=498 Identities=26% Similarity=0.346 Sum_probs=386.9
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.+++.+... |+++|+.+.+ +.+||+||.++++++|+.|.+.. |+++||+|+++++|++++++++
T Consensus 9 ~~tl~~~l~~~a~~~--~~~~a~~~~~------~~~Ty~~l~~~v~~~a~~L~~~~--g~~~g~~V~i~~~~~~~~~~~~ 78 (546)
T PRK08314 9 ETSLFHNLEVSARRY--PDKTAIVFYG------RAISYRELLEEAERLAGYLQQEC--GVRKGDRVLLYMQNSPQFVIAY 78 (546)
T ss_pred CCCHHHHHHHHHHHc--CCCcceeecC------ceecHHHHHHHHHHHHHHHHHhh--CCCCCCEEEEECCCChHHHHHH
Confidence 557888888887764 8899988653 47999999999999999998752 6999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCC-CCCCcccc---ccc---------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSW-PNLPWLHT---DSW--------- 614 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~-~~~~~~~~---~~~--------- 614 (2280)
|||+++|++++|+++..+.++ +.+++++++++.++++......+..... .....+.. .+.
T Consensus 79 lA~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (546)
T PRK08314 79 YAILRANAVVVPVNPMNREEE-------LAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAV 151 (546)
T ss_pred HHHHHcCcEEeecCcCcCHHH-------HHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCc
Confidence 999999999999999998887 8899999999999998765432211000 00000000 000
Q ss_pred ---cc---------------cccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCC
Q 037878 615 ---VK---------------NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK 676 (2280)
Q Consensus 615 ---~~---------------~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~ 676 (2280)
.. .................++++|+|+|||||||.||||+++|++++..+......+++..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 231 (546)
T PRK08314 152 PAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPE 231 (546)
T ss_pred ccccccccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCC
Confidence 00 000000000112233467899999999999999999999999999998888888889999
Q ss_pred cEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccccccccc
Q 037878 677 TVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSF 756 (2280)
Q Consensus 677 d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~ 756 (2280)
|++++++|++|.+++...++.++..|+++++.++ .++..+++.++++++|++.++|.++..++.... ....
T Consensus 232 d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~-----~~~~ 302 (546)
T PRK08314 232 SVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR----WDREAAARLIERYRVTHWTNIPTMVVDFLASPG-----LAER 302 (546)
T ss_pred ceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC----CCHHHHHHHHHHhcCceecccHHHHHHHHhCCC-----cccc
Confidence 9999999999999998889999999999998763 278899999999999999999998877764321 1224
Q ss_pred CCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCc
Q 037878 757 DLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDV 836 (2280)
Q Consensus 757 ~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~ 836 (2280)
+++++|.+++||+++++++.+++.+.+ +.++++.||+||++..++..... ....+++|.|++++
T Consensus 303 ~~~~l~~~~~gG~~~~~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~G~~~~g~ 366 (546)
T PRK08314 303 DLSSLRYIGGGGAAMPEAVAERLKELT------GLDYVEGYGLTETMAQTHSNPPD----------RPKLQCLGIPTFGV 366 (546)
T ss_pred CchhhheeeeccccCCHHHHHHHHHHc------CCcEEecccccccccceecCCCc----------CCCCCccCcccCCe
Confidence 678999999999999999999998864 46799999999998665432211 11236789999999
Q ss_pred eEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCe
Q 037878 837 DIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDL 915 (2280)
Q Consensus 837 ~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~ 915 (2280)
+++|+|++.+. .++.|+.|||+|+|++++.||+|+++.|++.|.. .++.+||+|||+|+++ +|.++++||+||+
T Consensus 367 ~~~i~d~~~~~-~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~----~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~ 441 (546)
T PRK08314 367 DARVIDPETLE-ELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIE----IDGKRFFRTGDLGRMDEEGYFFITDRLKRM 441 (546)
T ss_pred EEEEEeCCCCc-CCCCCCceEEEEECCchhccccCChhHhhhhhhh----cCCCceEecCCEEEEcCCCcEEEEecchhh
Confidence 99999976554 4479999999999999999999999999998864 2346799999999997 9999999999999
Q ss_pred EEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC--C-CCHHHHHHHHH
Q 037878 916 IIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK--P-VDKDVIENIKT 992 (2280)
Q Consensus 916 IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~--~-~~~~l~~~l~~ 992 (2280)
||++|+||+|.|||++|.++|+|.+ ++|++.+++..+ +...++++. .++. . ...++.+.+++
T Consensus 442 i~~~G~~v~~~eIE~~i~~~~~v~~---~~v~~~~~~~~~----------~~~~a~v~~--~~~~~~~~~~~~l~~~~~~ 506 (546)
T PRK08314 442 INASGFKVWPAEVENLLYKHPAIQE---ACVIATPDPRRG----------ETVKAVVVL--RPEARGKTTEEEIIAWARE 506 (546)
T ss_pred EEeCCEEECHHHHHHHHHhCcchhe---EEEEeCCCcccC----------ceeEEEEEE--CCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999865 788887765322 222223322 2221 1 12456666666
Q ss_pred HHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 993 RVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 993 ~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
++.. ++ .|..++.+++||+|.|||++|++|++...
T Consensus 507 ~l~~-~~---~P~~~~~v~~iP~t~~GKv~r~~L~~~~~ 541 (546)
T PRK08314 507 HMAA-YK---YPRIVEFVDSLPKSGSGKILWRQLQEQEK 541 (546)
T ss_pred hccc-CC---CCcEEEEecCCCCCCccceeHHHHHHHHh
Confidence 6654 34 44455556999999999999999877643
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-53 Score=585.86 Aligned_cols=495 Identities=19% Similarity=0.237 Sum_probs=369.5
Q ss_pred CCCHHHHHHhhccccccCC-ceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQK-KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d-~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
..++.+++++.+++. |+ ++|+.. .+ .+++||+||.++++++|+.|.+. +++||+|+++++|++|++++
T Consensus 203 ~~t~~~~l~~~~~~~--p~~~~a~~~--~~---~~~~Ty~el~~~~~~lA~~L~~~----~~~gd~Val~~~n~~e~~~~ 271 (718)
T PRK08043 203 RETLYEALLSAQYRY--GAGKPCIED--VN---FTPDSYRKLLKKTLFVGRILEKY----SVEGERIGLMLPNATISAAV 271 (718)
T ss_pred CCCHHHHHHHHHHHh--CCCCcceEc--CC---CCcccHHHHHHHHHHHHHHHHHh----cCCCceEEEEcCCcHHHHHH
Confidence 457888888887764 65 567642 11 25799999999999999999875 59999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC----CCCCCCccccccccccc--cc
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG----SWPNLPWLHTDSWVKNS--KN 620 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~ 620 (2280)
+|||+++|++++|+++..+.++ +.++++++++++++++.+........ ..+....+..++..... ..
T Consensus 272 ~lA~~~~G~v~vpl~~~~~~~~-------l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 344 (718)
T PRK08043 272 IFGASLRRRIPAMMNYTAGVKG-------LTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTAD 344 (718)
T ss_pred HHHHHHcCCcccccccCcCHHH-------HHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhH
Confidence 9999999999999999998888 89999999999999976543321100 00111111111100000 00
Q ss_pred ------cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHH
Q 037878 621 ------LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 621 ------~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
.............++|+++|+|||||||.||||++||+|+.+.+......++++++|++++++|++|.+++...
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~ 424 (718)
T PRK08043 345 KLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVG 424 (718)
T ss_pred HHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHH
Confidence 00000011123467999999999999999999999999999998888888889999999999999999998888
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHH
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQT 774 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~ 774 (2280)
++.++..|+++++.+. . .++..+.+.+.++++|++..+|+++..+.+.. ...++++||.+++|||+++++
T Consensus 425 ~~~~l~~G~~vv~~~~-~--~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-------~~~~~~~lr~i~~gg~~l~~~ 494 (718)
T PRK08043 425 LFTPLLTGAEVFLYPS-P--LHYRIVPELVYDRNCTVLFGTSTFLGNYARFA-------NPYDFARLRYVVAGAEKLQES 494 (718)
T ss_pred HHHHHHcCCEEEEeCC-c--ccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-------CcccccceEEEEEeCccCCHH
Confidence 8999999999988753 1 25677889999999999999999887664321 125688999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCC
Q 037878 775 TVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854 (2280)
Q Consensus 775 l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~ 854 (2280)
+.++|.+.+ ++.+++.||+||++.+++..... ....+++|+|+||++++|+|+++ .|+
T Consensus 495 ~~~~~~~~~------g~~l~~~YG~TE~~~~~~~~~~~----------~~~~~svG~p~pg~~~~i~d~~~------~~~ 552 (718)
T PRK08043 495 TKQLWQDKF------GLRILEGYGVTECAPVVSINVPM----------AAKPGTVGRILPGMDARLLSVPG------IEQ 552 (718)
T ss_pred HHHHHHHHc------CCCeecccCcccccceEEecCCc----------ccCCCCCCCcCCCCeeEEecCCC------CCC
Confidence 999998864 46799999999998766543211 11247899999999999999664 256
Q ss_pred eeEEEEcCCCcccccCC--CchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 855 EGEVWISSPSAGIGYWG--REELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 855 ~GEL~i~Gp~v~~GY~~--~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
.|||+++|++++.|||+ +|+.+...+.........+|||+|||+|+++ ||+++|+||+||+||++|+||+|.|||++
T Consensus 553 ~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~ 632 (718)
T PRK08043 553 GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQL 632 (718)
T ss_pred ceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHH
Confidence 69999999999999998 4553222111000011135899999999997 99999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCC
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~ 1011 (2280)
+.+++.+.+ ++|++.+++..++ ..+++.. ......+++.++++++..+.+++|. .+..++
T Consensus 633 l~~~~~~~~---~avv~~~~~~~ge------------~~v~~~~--~~~~~~~~l~~~~~~~~l~~~~vP~---~i~~v~ 692 (718)
T PRK08043 633 ALGVSPDKQ---HATAIKSDASKGE------------ALVLFTT--DSELTREKLQQYAREHGVPELAVPR---DIRYLK 692 (718)
T ss_pred HHhCCccce---EEEEEccCCCCCc------------eEEEEEc--CcccCHHHHHHHHHhcCCCcccCCc---eEEEec
Confidence 999988765 6677776654321 1222221 1122234566666665223355553 444559
Q ss_pred CccCCCCcccchHHHHHHhhc
Q 037878 1012 TMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1012 ~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+||+|++|||||++|++++.+
T Consensus 693 ~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 693 QLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred ccCcCCCCCcCHHHHHHHHhc
Confidence 999999999999999887654
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=566.01 Aligned_cols=494 Identities=26% Similarity=0.372 Sum_probs=379.2
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLT-SRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~-~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
.++.+++++.++. +|+++|+...+ +.+||+||.++++++|+.|.+ . |+++||+|+++++|++++++++
T Consensus 24 ~~~~~~l~~~a~~--~p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~---gi~~gd~Vai~~~n~~~~~~~~ 92 (562)
T PRK05677 24 PNIQAVLKQSCQR--FADKPAFSNLG------KTLTYGELYKLSGAFAAWLQQHT---DLKPGDRIAVQLPNVLQYPVAV 92 (562)
T ss_pred CcHHHHHHHHHHh--CCCCeeEEECC------ceeeHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCHHHHHHH
Confidence 4788899888876 48999987422 479999999999999999986 5 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCccccccc------------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHTDSW------------ 614 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~~~~------------ 614 (2280)
|||+++|++++|+++..+.++ +.++++++++++++++........... ......+...+.
T Consensus 93 la~~~~Ga~~v~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (562)
T PRK05677 93 FGAMRAGLIVVNTNPLYTARE-------MEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLI 165 (562)
T ss_pred HHHHHcCeEEeecCCCCCHHH-------HHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhc
Confidence 999999999999999999888 889999999999998754432211000 000000000000
Q ss_pred ---cc------------c---cc---ccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC-
Q 037878 615 ---VK------------N---SK---NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK- 672 (2280)
Q Consensus 615 ---~~------------~---~~---~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~- 672 (2280)
.. . .. ..............++|+++|+|||||||+||||+++|+++...+......+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~ 245 (562)
T PRK05677 166 NAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGS 245 (562)
T ss_pred ccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhcc
Confidence 00 0 00 00000011122346799999999999999999999999999887766555443
Q ss_pred -CC-CCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccc
Q 037878 673 -ST-SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSK 750 (2280)
Q Consensus 673 -~~-~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~ 750 (2280)
.. ..+++++.+|++|.+++...++..+..|++.++.+. . .++..+++.++++++|++..+|+++..+......
T Consensus 246 ~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-- 320 (562)
T PRK05677 246 NLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISN-P--RDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAF-- 320 (562)
T ss_pred CCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecC-c--ccHHHHHHHHHHcCceEEecHHHHHHHHHhCccc--
Confidence 33 346889999999999987778888888887766543 2 3788999999999999999999998877653211
Q ss_pred ccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeecccc
Q 037878 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVD 830 (2280)
Q Consensus 751 ~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG 830 (2280)
...+++++|.+++||+++++++.++|.+.+ ++.+++.||+||++.+++..... ....+++|
T Consensus 321 ---~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~------~~~v~~~YG~tE~~~~~~~~~~~----------~~~~~~vG 381 (562)
T PRK05677 321 ---RKLDFSALKLTLSGGMALQLATAERWKEVT------GCAICEGYGMTETSPVVSVNPSQ----------AIQVGTIG 381 (562)
T ss_pred ---ccCChhhceEEEEcCccCCHHHHHHHHHHc------CCCeeccCCccccCcceeecCcc----------CCCCCccC
Confidence 124567899999999999999999998863 56799999999998765533211 11246789
Q ss_pred CCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEE
Q 037878 831 QNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFIT 909 (2280)
Q Consensus 831 ~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~ 909 (2280)
.|+|+++++|+|+++ ..+|.|+.|||+|+|+.+++||+++|+.|++.|.. ++||+|||+|+++ ||.++|.
T Consensus 382 ~~~~~~~v~i~d~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~g~~~TGDlg~~~~~G~l~i~ 452 (562)
T PRK05677 382 IPVPSTLCKVIDDDG--NELPLGEVGELCVKGPQVMKGYWQRPEATDEILDS-------DGWLKTGDIALIQEDGYMRIV 452 (562)
T ss_pred ccCCCCEEEEECCCC--CCCCCCCCeEEEEecCccchhhcCCchhhhhccCC-------CCcccccceEEECCCCcEEEE
Confidence 999999999999875 34589999999999999999999999999988853 4899999999997 9999999
Q ss_pred ecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHH
Q 037878 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIE 988 (2280)
Q Consensus 910 GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~ 988 (2280)
||+||+||++|++|+|.|||++|.++++|.+ ++|++++++..+ +.+.++++ ..++. ...+++.+
T Consensus 453 GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~---~~v~g~~~~~~g----------~~~~~~v~--~~~~~~~~~~~l~~ 517 (562)
T PRK05677 453 DRKKDMILVSGFNVYPNELEDVLAALPGVLQ---CAAIGVPDEKSG----------EAIKVFVV--VKPGETLTKEQVME 517 (562)
T ss_pred ecCcCeEEeCCEEECHHHHHHHHHhCCCccE---EEEEeccCccCC----------ceEEEEEE--eCCCCCCCHHHHHH
Confidence 9999999999999999999999999999975 888888765322 22233332 22222 23357778
Q ss_pred HHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 989 NIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 989 ~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
.++++++. +++| ..++.+++||+|+|||++|++|++++..
T Consensus 518 ~~~~~l~~-~~~P---~~i~~v~~iP~t~sGKi~r~~L~~~~~~ 557 (562)
T PRK05677 518 HMRANLTG-YKVP---KAVEFRDELPTTNVGKILRRELRDEELK 557 (562)
T ss_pred HHHHhhhh-ccCC---cEEEEeccCCCCCcccccHHHHHHHHHH
Confidence 88887765 5555 3445569999999999999999887543
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=578.63 Aligned_cols=465 Identities=21% Similarity=0.259 Sum_probs=344.0
Q ss_pred cccCcccccCCCCCCCCCCCCHHHHHHhhccccccCCceEEEEE---------cCCC--------ceeeeccHHHHHHHH
Q 037878 450 WARNFKELEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWI---------NEEG--------VAVNQSTYEELDANA 512 (2280)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~---------~~~g--------~~~~~lTY~eL~~~a 512 (2280)
.+|+.... ++....++...|+.+++++.++.. ||++|+.+. ..++ .+++.+||+||.+++
T Consensus 40 ~~r~~~~~-~~~~~~~~~~~t~~~l~~~~~~~~--pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v 116 (696)
T PLN02387 40 AIRNARFP-ELVETPWEGATTLAALFEQSCKKY--SDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERV 116 (696)
T ss_pred ceecCccc-cccccCCCCCCCHHHHHHHHHHHC--CCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHH
Confidence 35555422 344445677789999999998874 889998542 0112 123569999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEcc
Q 037878 513 SRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTI 592 (2280)
Q Consensus 513 ~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~ 592 (2280)
+++|++|.++ |+++||+|+|+++|++||++++|||+++|+++||+++..+.++ +.++++++++++++++.
T Consensus 117 ~~lA~~L~~l---G~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~-------l~~il~~s~~~~li~~~ 186 (696)
T PLN02387 117 CNFASGLVAL---GHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA-------LCHSLNETEVTTVICDS 186 (696)
T ss_pred HHHHHHHHHh---CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHH-------HHHHHHccCCCEEEECH
Confidence 9999999998 9999999999999999999999999999999999999999888 88999999999999976
Q ss_pred ccchhhccC--CCCCCC-ccccccccc------------------cccccccccccccCCCCCCCeEEEEeccCCCCCce
Q 037878 593 GYHSAVRVG--SWPNLP-WLHTDSWVK------------------NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAK 651 (2280)
Q Consensus 593 ~~~~~~~~~--~~~~~~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PK 651 (2280)
+....+... ..+.+. .+..++... ...............+.++|+++|+|||||||.||
T Consensus 187 ~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PK 266 (696)
T PLN02387 187 KQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPK 266 (696)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCC
Confidence 543322111 111111 111111000 00000001111223356899999999999999999
Q ss_pred EEEEchHHHHHHHHHHHHHc-CCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCcccccc----CHHHHHHHHhh
Q 037878 652 GVMITHGGLIHNVKLMRKRY-KSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIK----NPLLWLETMSK 726 (2280)
Q Consensus 652 gV~~tH~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~----~p~~l~~~i~~ 726 (2280)
||++||+|+++.+......+ ++.++|++++++|++|.+++.... ..+..|+++....+..+.. -+..++..+++
T Consensus 267 GV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~-~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~ 345 (696)
T PLN02387 267 GVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAES-VMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASA 345 (696)
T ss_pred EEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHH-HHHHhCCEEEECChhhhcccccccccCchhhHHH
Confidence 99999999998887766554 578899999999999999986543 3566777765533322111 02234567889
Q ss_pred cceeeecCcHHHHHHHHHHHhccccc-----------------------------cc--cc----------CC-CCccEE
Q 037878 727 YRATHSAGPNFAFELMVRRLESSKDK-----------------------------VR--SF----------DL-SSMKFL 764 (2280)
Q Consensus 727 ~~vt~~~~~p~~~~~l~~~~~~~~~~-----------------------------~~--~~----------~l-~~Lr~l 764 (2280)
+++|++.++|.+++.+.+........ .. .+ .+ +++|.+
T Consensus 346 ~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i 425 (696)
T PLN02387 346 LKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFM 425 (696)
T ss_pred hCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEE
Confidence 99999999999998887543211000 00 00 01 589999
Q ss_pred EEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEc-C
Q 037878 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN-P 843 (2280)
Q Consensus 765 ~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd-~ 843 (2280)
++||+++++++.+.+...+ ++.++++||+||++..++..... ....|++|+|+|+++++|+| +
T Consensus 426 ~~GGapl~~~~~~~~~~~~------g~~v~~~YG~TEt~~~~~~~~~~----------~~~~gsvG~p~p~~evkivd~~ 489 (696)
T PLN02387 426 LSGGAPLSGDTQRFINICL------GAPIGQGYGLTETCAGATFSEWD----------DTSVGRVGPPLPCCYVKLVSWE 489 (696)
T ss_pred EEcCCCCCHHHHHHHHHHc------CCCeeEeechhhcccceeecCcc----------cCCCCccCCCCCceEEEEeecc
Confidence 9999999999876665443 56799999999998766543211 12347899999999999999 4
Q ss_pred CCCccc-CCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE-CC
Q 037878 844 ETSEEI-GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV-AG 920 (2280)
Q Consensus 844 ~~~~~~-~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi-~G 920 (2280)
+++... .++++.|||+|+||+++.|||++|+.|+++|..+ .+|.|||||||+|+++ ||+|+|+||+||+||+ +|
T Consensus 490 ~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d---~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~G 566 (696)
T PLN02387 490 EGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVD---ERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHG 566 (696)
T ss_pred ccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccc---cCCCceeecCceEEECCCCcEEEEEcccceEECCCC
Confidence 543221 1345679999999999999999999999999532 2345699999999997 9999999999999998 69
Q ss_pred eeechHHHHHHHHhccCCcCCceeEEEecc
Q 037878 921 RNVYSADVEKTVESSTEHIRPGCCAVIGVP 950 (2280)
Q Consensus 921 ~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~ 950 (2280)
++|+|.|||++|.+||.|.+ |+|++.+
T Consensus 567 e~I~p~eIE~~l~~~p~V~~---~~V~g~~ 593 (696)
T PLN02387 567 EYVSLGKVEAALSVSPYVDN---IMVHADP 593 (696)
T ss_pred eEEchHHHHHHHhcCCCeeE---EEEEecC
Confidence 99999999999999999965 8888754
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=579.28 Aligned_cols=432 Identities=19% Similarity=0.244 Sum_probs=328.8
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcC-----------CCc----------eeeeccHHHHHHHHHHHHHHHHhcC
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINE-----------EGV----------AVNQSTYEELDANASRIAHKLLTSR 523 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~-----------~g~----------~~~~lTY~eL~~~a~~lA~~L~~~~ 523 (2280)
+++..++.++|++.+++. |+++|+.+... +|. ..+.+||+||.++++++|+.|+++
T Consensus 65 ~~~~~t~~~~~~~~~~~~--p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~- 141 (700)
T PTZ00216 65 WYYGPNFLQRLERICKER--GDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAEL- 141 (700)
T ss_pred cCCCCCHHHHHHHHHHhC--CCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHh-
Confidence 456678999999999874 88999887421 121 247999999999999999999998
Q ss_pred CCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhcc---
Q 037878 524 KPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV--- 600 (2280)
Q Consensus 524 ~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~--- 600 (2280)
|+++||+|+|+++|++||++++|||+++|+++||+++..+.++ +.++++++++++++++......+..
T Consensus 142 --Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~-------l~~il~~s~~~~lv~~~~~~~~l~~~~~ 212 (700)
T PTZ00216 142 --GLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA-------LAYALRETECKAIVCNGKNVPNLLRLMK 212 (700)
T ss_pred --CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHH-------HHhhhhccCccEEEECHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998887 8899999999999997653322110
Q ss_pred -CCCCCCCcccccccccc-------------ccccc---cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHH
Q 037878 601 -GSWPNLPWLHTDSWVKN-------------SKNLL---AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN 663 (2280)
Q Consensus 601 -~~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~ 663 (2280)
...+....+..+..... ..... ........+..++|+|+|+|||||||.||||++||+|+++.
T Consensus 213 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~ 292 (700)
T PTZ00216 213 SGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292 (700)
T ss_pred hccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence 00111111111110000 00000 00011123346899999999999999999999999999998
Q ss_pred HHHHHHHc----C-CCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHH-------HHhhcceee
Q 037878 664 VKLMRKRY----K-STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLE-------TMSKYRATH 731 (2280)
Q Consensus 664 ~~~~~~~~----~-~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~-------~i~~~~vt~ 731 (2280)
+.+....+ . ..+++++++++|++|.+++.. ....+..|+++++. ++..+.+ .++++++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~l~~~~pT~ 364 (700)
T PTZ00216 293 ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG-------SPRTLTDTFARPHGDLTEFRPVF 364 (700)
T ss_pred HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC-------CHHHhhhhhccccchHHHcCCcE
Confidence 87766543 2 367899999999999998753 34456777765542 3444433 578899999
Q ss_pred ecCcHHHHHHHHHHHhcccccc--------------------cc---------------c-CCCCccEEEEecCCCCHHH
Q 037878 732 SAGPNFAFELMVRRLESSKDKV--------------------RS---------------F-DLSSMKFLMVAAEPVRQTT 775 (2280)
Q Consensus 732 ~~~~p~~~~~l~~~~~~~~~~~--------------------~~---------------~-~l~~Lr~l~~gGe~l~~~l 775 (2280)
+.++|.+++.+.+......... .. . --+++|.+++||+++++++
T Consensus 365 ~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~ 444 (700)
T PTZ00216 365 LIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAAT 444 (700)
T ss_pred EEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHH
Confidence 9999999988765432110000 00 0 0158999999999999998
Q ss_pred HHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCe
Q 037878 776 VKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE 855 (2280)
Q Consensus 776 ~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~ 855 (2280)
.+.+...+ + .++|+||+||+++.++..... ....+++|+|+||++++|+|+++.....++++.
T Consensus 445 ~~~~~~~~------~-~l~~~YG~TEt~~~~~~~~~~----------~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~ 507 (700)
T PTZ00216 445 QEFVNVVF------G-MVIQGWGLTETVCCGGIQRTG----------DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR 507 (700)
T ss_pred HHHHHHHh------h-hHhhccCcccccccccccCCC----------CCCCCCcCCcCCCeEEEEeechhhccCCCCCCC
Confidence 87665542 3 799999999998765543211 223478999999999999997654334456778
Q ss_pred eEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEE-ECCeeechHHHHHHHH
Q 037878 856 GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLII-VAGRNVYSADVEKTVE 933 (2280)
Q Consensus 856 GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IK-i~G~rI~~~EIE~~L~ 933 (2280)
|||+|+||++++||||+|++|+++|.. +|||||||+|+++ ||.|+|+||+||||| .+|+||+|+|||++|.
T Consensus 508 GEL~vrG~~v~~GY~~~pe~T~~~f~~-------dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~ 580 (700)
T PTZ00216 508 GEILLRGPFLFKGYYKQEELTREVLDE-------DGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYG 580 (700)
T ss_pred ceEEEcCCcccchhcCChhHhhhhccc-------cCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHh
Confidence 999999999999999999999999964 3799999999997 999999999999999 7999999999999999
Q ss_pred hccCCcC
Q 037878 934 SSTEHIR 940 (2280)
Q Consensus 934 ~~p~v~~ 940 (2280)
+||.|.+
T Consensus 581 ~~p~V~~ 587 (700)
T PTZ00216 581 QNELVVP 587 (700)
T ss_pred cCcCccc
Confidence 9999964
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=539.14 Aligned_cols=422 Identities=23% Similarity=0.330 Sum_probs=334.2
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++...+...+..+ ++.+++...... .++.+||+|+.+++.++|++|++. |+.+||+|+|++.|+++|+++.
T Consensus 15 ~~~~~~~~~~~~~~~--~~~~a~~~~~~~--~~~~~ty~e~~~~v~~~a~gL~~l---g~~~gdrvai~a~nr~eW~i~d 87 (613)
T COG1022 15 IHTLPKRLAERVKDR--PDGVALMYKELG--GWEAITYRELYERVRALASGLLSL---GIPAGDRVAIFAANRPEWAIAD 87 (613)
T ss_pred cccHHHHHHHHhhcC--CcceeEeeecCC--cceEeeHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeCCCHHHHHHH
Confidence 345666676666664 567777665522 357999999999999999999999 8977999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCC---CCccc--------------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPN---LPWLH-------------- 610 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~---~~~~~-------------- 610 (2280)
+||+.+|++.||+.++...+. +.++++++++++++++.............. ...+.
T Consensus 88 ~a~~~~g~v~Vp~y~t~~~~~-------~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (613)
T COG1022 88 LAILALGAVSVPIYSTSTPEQ-------LAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKA 160 (613)
T ss_pred HHHHHcCCeEEecCCCCCHHH-------HHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhh
Confidence 999999999999999988877 889999999999999874332211100000 00000
Q ss_pred --cccccccccc----cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC-CCCCcEEEEEc
Q 037878 611 --TDSWVKNSKN----LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK-STSKTVLVSWL 683 (2280)
Q Consensus 611 --~~~~~~~~~~----~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~-~~~~d~~l~~~ 683 (2280)
.......... ..........++.+||+|.|+|||||||+||||++||+|+++.+........ +.++|++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfL 240 (613)
T COG1022 161 LVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFL 240 (613)
T ss_pred ccccccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeC
Confidence 0000000000 0000111223578999999999999999999999999999999999999997 99999999999
Q ss_pred CchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccccccc---------
Q 037878 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVR--------- 754 (2280)
Q Consensus 684 pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~--------- 754 (2280)
|++|++.++++....+.+|.+... . .++..+++.+.+.++|++.++|.+|+.+.+.+........
T Consensus 241 PlaHi~Er~~~~~~~~~~g~~~~~-~-----~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~ 314 (613)
T COG1022 241 PLAHIFERAFEGGLALYGGVTVLF-K-----EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRW 314 (613)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEe-c-----CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 999999997665555555554443 2 3889999999999999999999999887544322110000
Q ss_pred ---------------------------------ccCC-CCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCcc
Q 037878 755 ---------------------------------SFDL-SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLA 800 (2280)
Q Consensus 755 ---------------------------------~~~l-~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~T 800 (2280)
...+ .++|++++||+++++++...++.. ++.+.++||+|
T Consensus 315 a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-------Gi~i~eGYGlT 387 (613)
T COG1022 315 ALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-------GIPILEGYGLT 387 (613)
T ss_pred HHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-------CCCeEEEeccc
Confidence 0011 489999999999999988877764 58899999999
Q ss_pred ccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHH
Q 037878 801 ENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITF 880 (2280)
Q Consensus 801 E~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f 880 (2280)
||+..+++.... ....|++|.|+|+++++|+| .|||+||||+|++|||++|+.|+++|
T Consensus 388 Ets~~~~v~~~~----------~~~~gtvG~p~p~~evKI~d------------~GEilVRG~~Vm~GYyk~pe~Taeaf 445 (613)
T COG1022 388 ETSAVVSVNPPD----------RFVLGTVGKPLPGIEVKIAD------------DGEILVRGPNVMKGYYKNPEATAEAF 445 (613)
T ss_pred ccccceEEcccc----------CcccCCcCCcCCCceEEEcc------------CceEEEecchhcchhcCChHHHhhhc
Confidence 999988876432 33468999999999999988 49999999999999999999999999
Q ss_pred hhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCcCCceeEEEe
Q 037878 881 RNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHIRPGCCAVIG 948 (2280)
Q Consensus 881 ~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~ 948 (2280)
++ +|||+|||+|.++ +|+|.++||+||.||+ +|++|+|+.||+.+.++|-|.+ ++|++
T Consensus 446 ~~-------DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~q---i~vvg 505 (613)
T COG1022 446 TE-------DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQ---ICVVG 505 (613)
T ss_pred cc-------cCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeE---EEEEe
Confidence 85 5999999999998 9999999999999999 8999999999999999998865 77777
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=561.83 Aligned_cols=486 Identities=19% Similarity=0.241 Sum_probs=372.6
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.++|++++++. |+++|+... + +++||+||+++++++|++|.++ |+++||+|+++++|+++++++++
T Consensus 43 ~~~~~~l~~~a~~~--p~~~a~~~~--~----~~~Ty~el~~~~~~~A~~L~~~---g~~~g~~V~i~~~n~~~~~~~~l 111 (537)
T PRK13382 43 MGPTSGFAIAAQRC--PDRPGLIDE--L----GTLTWRELDERSDALAAALQAL---PIGEPRVVGIMCRNHRGFVEALL 111 (537)
T ss_pred CCHHHHHHHHHHhC--CCCeEEEeC--C----CeecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEecCcHHHHHHHH
Confidence 46889898888774 899998742 1 4799999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-ccccccccc--ccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTDSWVK--NSKNLLA 623 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~~~~~--~~~~~~~ 623 (2280)
||+++|++++|+++.++.++ +.++++++++++++++......+... ..+... .+...+... .......
T Consensus 112 A~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T PRK13382 112 AANRIGADILLLNTSFAGPA-------LAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIA 184 (537)
T ss_pred HHHHcCcEEEecCcccCHHH-------HHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhh
Confidence 99999999999999999888 88999999999999986544322110 001000 011100000 0000000
Q ss_pred ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccc
Q 037878 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703 (2280)
Q Consensus 624 ~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~ 703 (2280)
..........+++.++++|||||||+||||+++|+++..........+....+++++..+|++|.+++ ..++.++..|+
T Consensus 185 ~~~~~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~ 263 (537)
T PRK13382 185 AHAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGF-SQLVLAASLAC 263 (537)
T ss_pred ccCcCCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHH-HHHHHHHhcCc
Confidence 00001112356889999999999999999999999998888887778888899999999999999997 56888899999
Q ss_pred eEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHh
Q 037878 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT 783 (2280)
Q Consensus 704 ~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~ 783 (2280)
++++.. . .+|..+++.++++++|++..+|+++..+.+..... ....+++++|.+++|||+++++++++|.+.+
T Consensus 264 ~~~~~~--~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 336 (537)
T PRK13382 264 TIVTRR--R--FDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV---RNRYSGRSLRFAAASGSRMRPDVVIAFMDQF 336 (537)
T ss_pred EEEECC--C--cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---cccCCccceeEEEEcCCCCCHHHHHHHHHHc
Confidence 988754 2 38999999999999999999999998886532211 1124567899999999999999999999875
Q ss_pred cCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCC
Q 037878 784 RPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP 863 (2280)
Q Consensus 784 ~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp 863 (2280)
+..++|.||+||++.+++..... . ....+++|+|+++++++|+|+++ ..+|.|+.|||+|+|+
T Consensus 337 ------~~~i~~~YG~TE~~~~~~~~~~~-~--------~~~~~~vG~p~~~~~~~i~d~~~--~~~~~g~~GEl~v~g~ 399 (537)
T PRK13382 337 ------GDVIYNNYNATEAGMIATATPAD-L--------RAAPDTAGRPAEGTEIRILDQDF--REVPTGEVGTIFVRND 399 (537)
T ss_pred ------CCcEEecccccccCcceecChhH-h--------ccCCCCccccCcCcEEEEECCCC--CCCCCCCeeEEEEEcC
Confidence 34699999999998765532211 0 11246799999999999999875 3457999999999999
Q ss_pred CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCc
Q 037878 864 SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG 942 (2280)
Q Consensus 864 ~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~ 942 (2280)
+++.||+ |+.+.. |. ++||+|||+++++ ||+++|+||+||+||++|+||+|.|||++|.++|+|.+
T Consensus 400 ~~~~gY~--~~~~~~-~~--------~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~-- 466 (537)
T PRK13382 400 TQFDGYT--SGSTKD-FH--------DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAE-- 466 (537)
T ss_pred CcccCcc--ccchhh-cc--------CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEee--
Confidence 9999998 555543 32 3799999999997 99999999999999999999999999999999999975
Q ss_pred eeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCccc
Q 037878 943 CCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKI 1021 (2280)
Q Consensus 943 ~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKv 1021 (2280)
++|++++++..+ +....+++ ..++.. ..+++.+.++++++. +++| ..++.++++|+|++||+
T Consensus 467 -~~v~~~~~~~~g----------~~~~a~vv--~~~~~~~~~~~l~~~l~~~l~~-~~~P---~~i~~v~~lP~t~~gK~ 529 (537)
T PRK13382 467 -AAVIGVDDEQYG----------QRLAAFVV--LKPGASATPETLKQHVRDNLAN-YKVP---RDIVVLDELPRGATGKI 529 (537)
T ss_pred -EEEEccCccccC----------CEEEEEEE--ECCCCCCCHHHHHHHHHHhccC-CCCC---cEEEEeccCCCCCCCCC
Confidence 888888765432 22222222 222322 224566666666654 4444 44555589999999999
Q ss_pred chHHHH
Q 037878 1022 KRFECL 1027 (2280)
Q Consensus 1022 dR~~L~ 1027 (2280)
+|++|+
T Consensus 530 ~r~~L~ 535 (537)
T PRK13382 530 LRRELQ 535 (537)
T ss_pred cHHhhC
Confidence 999764
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=551.77 Aligned_cols=487 Identities=19% Similarity=0.305 Sum_probs=381.9
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLT-SRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~-~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.+.+.++++|+.. |+++|+...+ +.+||+||.++++++|+.|++ . |+++||+|+++++|+++++++++
T Consensus 3 ~~~~~~~~~a~~~--p~~~a~~~~~------~~~ty~~l~~~~~~la~~L~~~~---g~~~~~~V~i~~~~~~~~~~~~l 71 (496)
T PRK06839 3 GIAYWIEKRAYLH--PDRIAIITEE------EEMTYKQLHEYVSKVAAYLIYEL---NVKKGERIAILSQNSLEYIVLLF 71 (496)
T ss_pred cHHHHHHHHHHHC--CCCeEEEECC------ceEEHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCHHHHHHHH
Confidence 4677888888774 8999987521 689999999999999999975 5 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC--CCCCCccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS--WPNLPWLHTDSWVKNSKNLLAENV 626 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 626 (2280)
||+++|++++|+++..+.++ +..++++++++.++++........... ......+...++.. ......
T Consensus 72 a~~~~G~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 140 (496)
T PRK06839 72 AIAKVECIAVPLNIRLTENE-------LIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKE----IEDRKI 140 (496)
T ss_pred HHHhcCcEEEecCcccCHHH-------HHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHh----hhccCC
Confidence 99999999999999888777 788999999999999866543322110 00011111111110 001111
Q ss_pred cccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEE
Q 037878 627 VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAI 706 (2280)
Q Consensus 627 ~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~v 706 (2280)
.......++++++|+|||||||.||+|+++|+++..........++...+++++.++|++|..++...++.++..|++++
T Consensus 141 ~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~ 220 (496)
T PRK06839 141 DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVII 220 (496)
T ss_pred CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEE
Confidence 12234567899999999999999999999999988776666677788999999999999999998777788999999988
Q ss_pred EeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCC
Q 037878 707 LFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786 (2280)
Q Consensus 707 l~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~ 786 (2280)
+.+. .++..+++.++++++|++.++|.+++.+++..... ..+++++|.+++||+++++++.+++.+.
T Consensus 221 ~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~~~~lr~~~~gG~~~~~~~~~~~~~~---- 287 (496)
T PRK06839 221 VPRK----FEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-----TTNLQSVRWFYNGGAPCPEELMREFIDR---- 287 (496)
T ss_pred EccC----CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-----cCCCcccceEEECCCCCCHHHHHHHHHh----
Confidence 7542 38999999999999999999999998887643221 2567899999999999999999998764
Q ss_pred CCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcc
Q 037878 787 GLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAG 866 (2280)
Q Consensus 787 g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~ 866 (2280)
++.+.+.||+||++..++....... ....+++|+|+++++++|+|+++. . ++.|+.|||+|+|+.++
T Consensus 288 ---g~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~G~p~~~~~~~i~d~~~~-~-~~~g~~Gel~v~~~~~~ 354 (496)
T PRK06839 288 ---GFLFGQGFGMTETSPTVFMLSEEDA--------RRKVGSIGKPVLFCDYELIDENKN-K-VEVGEVGELLIRGPNVM 354 (496)
T ss_pred ---CCeeEeeccCCCCCcceEecccccc--------cccCCCCcccCCCceEEEECCCcC-C-CCCCCceEEEEECCCcc
Confidence 4679999999999865443221110 123478999999999999998874 3 57999999999999999
Q ss_pred cccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeE
Q 037878 867 IGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCA 945 (2280)
Q Consensus 867 ~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aa 945 (2280)
.||+++|+.++..|. ++||+|||+++++ ||.++++||.||+||.+|++|+|.|||++|.++|+|.+ ++
T Consensus 355 ~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~---~~ 423 (496)
T PRK06839 355 KEYWNRPDATEETIQ--------DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYE---VA 423 (496)
T ss_pred hhhcCChHHHHHHHc--------CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeE---EE
Confidence 999999999988774 3899999999996 99999999999999999999999999999999999875 88
Q ss_pred EEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchH
Q 037878 946 VIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRF 1024 (2280)
Q Consensus 946 Vv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~ 1024 (2280)
|++.+++..+ ....++++ ..++.. ...+++++++++++. +++ |..++.++++|+|.+||++|+
T Consensus 424 v~~~~~~~~g----------~~~~~~v~--~~~~~~~~~~~l~~~~~~~l~~-~~~---P~~~~~v~~~P~t~~GKi~r~ 487 (496)
T PRK06839 424 VVGRQHVKWG----------EIPIAFIV--KKSSSVLIEKDVIEHCRLFLAK-YKI---PKEIVFLKELPKNATGKIQKA 487 (496)
T ss_pred EEeccccccC----------ceEEEEEE--ECCCCCCCHHHHHHHHHhhCcC-CCC---CcEEEEeccCCCCccccccHH
Confidence 8888775432 12222222 222322 224566666666554 343 445566699999999999999
Q ss_pred HHHHHhh
Q 037878 1025 ECLKQFV 1031 (2280)
Q Consensus 1025 ~L~~~~~ 1031 (2280)
+|+++..
T Consensus 488 ~l~~~~~ 494 (496)
T PRK06839 488 QLVNQLK 494 (496)
T ss_pred HHHHHhh
Confidence 9988754
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=557.07 Aligned_cols=503 Identities=23% Similarity=0.361 Sum_probs=386.9
Q ss_pred CCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 467 ELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 467 ~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
...++.+++++.+++. |+++|+.+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+++++++
T Consensus 14 ~~~~l~~~l~~~~~~~--~~~~ai~~~~~~----~~~Ty~~l~~~~~~~a~~L~~~---gi~~g~~V~i~~~~~~~~~~~ 84 (559)
T PRK08315 14 LEQTIGQLLDRTAARY--PDREALVYRDQG----LRWTYREFNEEVDALAKGLLAL---GIEKGDRVGIWAPNVPEWVLT 84 (559)
T ss_pred hhccHHHHHHHHHHHC--CCCeEEEEcCCC----eEEcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCChHHHHH
Confidence 3557899999888774 889998765432 5799999999999999999988 899999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh-----hcc---------------CCCCCC
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA-----VRV---------------GSWPNL 606 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~-----~~~---------------~~~~~~ 606 (2280)
+|||+++|++++|+++..+.++ +..+++++++++++++...... +.. ...+..
T Consensus 85 ~la~~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (559)
T PRK08315 85 QFATAKIGAILVTINPAYRLSE-------LEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPEL 157 (559)
T ss_pred HHHHHHhCeEEEecCccCCHHH-------HHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCc
Confidence 9999999999999999998887 8899999999999987643210 000 000000
Q ss_pred C-ccccc-----------cccccccccc-cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCC
Q 037878 607 P-WLHTD-----------SWVKNSKNLL-AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS 673 (2280)
Q Consensus 607 ~-~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~ 673 (2280)
. .+... ++........ ...........+++++||+|||||||.||||.++|+++...+......+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~ 237 (559)
T PRK08315 158 RRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL 237 (559)
T ss_pred eeEEeecccCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC
Confidence 0 00000 0000000000 000011223457899999999999999999999999999999888888999
Q ss_pred CCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccc
Q 037878 674 TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV 753 (2280)
Q Consensus 674 ~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~ 753 (2280)
.++|+++..+|++|..+++..++.++..|+++++... . .+|..+++.++++++|++.++|+++..++.....
T Consensus 238 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-~--~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~----- 309 (559)
T PRK08315 238 TEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGE-G--FDPLATLAAVEEERCTALYGVPTMFIAELDHPDF----- 309 (559)
T ss_pred CCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecC-C--CCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-----
Confidence 9999999999999999998889999999999886443 2 3899999999999999999999988777643221
Q ss_pred cccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCC
Q 037878 754 RSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQND 833 (2280)
Q Consensus 754 ~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~ 833 (2280)
...+++++|.+++||+++++++.+++.+.+ ...+++|.||+||++.+++...... +. ....+++|+|+
T Consensus 310 ~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~-----~~~~l~~~YG~tE~~~~~~~~~~~~-~~------~~~~~~vG~p~ 377 (559)
T PRK08315 310 ARFDLSSLRTGIMAGSPCPIEVMKRVIDKM-----HMSEVTIAYGMTETSPVSTQTRTDD-PL------EKRVTTVGRAL 377 (559)
T ss_pred CCCCchhhheeEecCCCCCHHHHHHHHHHc-----CCcceeEEEcccccccceeecCccc-ch------hhccCCCCccC
Confidence 124678999999999999999999998875 2456999999999987665432211 10 11246789999
Q ss_pred CCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecC
Q 037878 834 PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRI 912 (2280)
Q Consensus 834 pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~ 912 (2280)
|+++++|+|++++ ..++.|+.|||+|+|+++++||+++|+.+++.|.. ++||+|||+++++ ||.++|+||+
T Consensus 378 ~~~~v~i~d~~~~-~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~-------~~~~~TGD~~~~~~dg~~~~~GR~ 449 (559)
T PRK08315 378 PHLEVKIVDPETG-ETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDA-------DGWMHTGDLAVMDEEGYVNIVGRI 449 (559)
T ss_pred CCcEEEEEcCccC-CcCCCCCceEEEEECchhhhhhcCChhHHhhcCCC-------CCCEEccceEEEcCCceEEEEeec
Confidence 9999999998844 34579999999999999999999999999887742 4899999999996 9999999999
Q ss_pred CCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHH
Q 037878 913 KDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIK 991 (2280)
Q Consensus 913 dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~ 991 (2280)
||+||++|+||+|.|||++|.++++|.+ ++|++++++..+ +...+++. ...+... ..++.+.++
T Consensus 450 d~~i~~~G~~v~~~eIE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v~--~~~~~~~~~~~l~~~l~ 514 (559)
T PRK08315 450 KDMIIRGGENIYPREIEEFLYTHPKIQD---VQVVGVPDEKYG----------EEVCAWII--LRPGATLTEEDVRDFCR 514 (559)
T ss_pred cceEEECCEEEcHHHHHHHHHhCCCceE---EEEEecCCCCCC----------eEEEEEEE--eCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999998865 888887664321 22222222 2222222 245556665
Q ss_pred HHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 992 TRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 992 ~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
++++. ++ .|..++.+++||+|++||++|++|++++.+
T Consensus 515 ~~l~~-~~---~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~ 551 (559)
T PRK08315 515 GKIAH-YK---IPRYIRFVDEFPMTVTGKIQKFKMREMMIE 551 (559)
T ss_pred hhccc-cc---CCcEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence 55543 33 444556669999999999999999888654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-52 Score=562.48 Aligned_cols=516 Identities=20% Similarity=0.250 Sum_probs=375.5
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++++++. |+++|+.+.+..+ ..+++||+||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 38 ~~~l~~~l~~~a~~~--p~~~a~~~~~~~~-~~~~~Ty~el~~~v~~~A~~L~~~---Gv~~gd~Vai~~~n~~e~~~~~ 111 (614)
T PRK08180 38 PRRLTDRLVHWAQEA--PDRVFLAERGADG-GWRRLTYAEALERVRAIAQALLDR---GLSAERPLMILSGNSIEHALLA 111 (614)
T ss_pred CccHHHHHHHHHHHC--CCCceeeeccCCC-ceeEeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEecCCCHHHHHHH
Confidence 357888998888764 8899987653222 236899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEcccc--chhhccCCCCCCCccccccccc-----cccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGY--HSAVRVGSWPNLPWLHTDSWVK-----NSKN 620 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 620 (2280)
|||+++|+++||+++.++... ....++.++++++++++++++... ...+..........+..+.... ....
T Consensus 112 lA~~~~Gav~vpl~~~~~~~~--~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (614)
T PRK08180 112 LAAMYAGVPYAPVSPAYSLVS--QDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAA 189 (614)
T ss_pred HHHHHcCCeEeeecccccccc--CCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHH
Confidence 999999999999999887210 001228899999999999997431 1111110000111111100000 0000
Q ss_pred cccc-----cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCC--CCcEEEEEcCchhhhhHHH
Q 037878 621 LLAE-----NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST--SKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 621 ~~~~-----~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~gl~~ 693 (2280)
.... .........++|+++|+|||||||.||||++||+|+.+.+......++.. .++++++++|++|.+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~ 269 (614)
T PRK08180 190 LLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNH 269 (614)
T ss_pred HhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHH
Confidence 0000 00111234679999999999999999999999999999888777777654 5689999999999999888
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
.++.+++.|+++++.+......++..+++.++++++|++.++|.++..+++....... ....++++||.+++||+++++
T Consensus 270 ~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~-~~~~~~~~lr~v~~gGa~l~~ 348 (614)
T PRK08180 270 NLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA-LRRRFFSRLKLLFYAGAALSQ 348 (614)
T ss_pred HHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh-hhhhhccceeEEEEccCCCCH
Confidence 8889999999998865321112345678889999999999999999988876543211 122457899999999999999
Q ss_pred HHHHHHHHHhcC-CCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCC
Q 037878 774 TTVKRFVELTRP-FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852 (2280)
Q Consensus 774 ~l~~~~~~~~~~-~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~ 852 (2280)
++.+++.+.+.. +| .++.+++.||+||++.+++..... ....+++|+|+||++++|+|+
T Consensus 349 ~~~~~~~~~~~~~~g-~~~~l~~~YG~TE~~~~~~~~~~~----------~~~~~svG~p~pg~~v~i~d~--------- 408 (614)
T PRK08180 349 DVWDRLDRVAEATCG-ERIRMMTGLGMTETAPSATFTTGP----------LSRAGNIGLPAPGCEVKLVPV--------- 408 (614)
T ss_pred HHHHHHHHHHHhhcC-CCceeeeeecccccCCceEecccc----------cCCCCcccCccCCcEEEEecC---------
Confidence 999999875311 12 246799999999998765543211 112478999999999999884
Q ss_pred CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEE----E-CCeEEEEecCCCeEEE-CCeeec--
Q 037878 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI----I-DGKFFITGRIKDLIIV-AGRNVY-- 924 (2280)
Q Consensus 853 G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~----~-dG~l~~~GR~dd~IKi-~G~rI~-- 924 (2280)
|..|||+|+||+++.|||++|+.|++.|.. +|||||||+|++ + ||+++|+||+||+||+ +|++|+
T Consensus 409 ~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~-------dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~ 481 (614)
T PRK08180 409 GGKLEVRVKGPNVTPGYWRAPELTAEAFDE-------EGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVG 481 (614)
T ss_pred CCCcEEEEecCccchhhcCChhHhHhhccc-------CCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecch
Confidence 346999999999999999999999998853 489999999999 3 6899999999999996 798777
Q ss_pred hHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecC--------------CCCCCHHHHHHH
Q 037878 925 SADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRD--------------GKPVDKDVIENI 990 (2280)
Q Consensus 925 ~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~--------------~~~~~~~l~~~l 990 (2280)
+.|||.++.+||.|.+ |+|++.+++.+ +++++..... .....+++.+.+
T Consensus 482 p~Eie~~l~~~p~V~~---a~V~g~~~~~~--------------~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (614)
T PRK08180 482 PLRARAVSAGAPLVQD---VVITGHDRDEI--------------GLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAF 544 (614)
T ss_pred hhhHHHHhhcCchhhe---EEEEcCCCCce--------------EEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHH
Confidence 7889999999999976 88998776432 2222221110 001235678888
Q ss_pred HHHHHHhcCc----ceeEEEEecCCCccCCC------CcccchHHHHHHhhcCCCC
Q 037878 991 KTRVVEEHGV----TVASVKLIKPRTMSKTT------SGKIKRFECLKQFVDGTLN 1036 (2280)
Q Consensus 991 ~~~l~~~~~~----~~~~~~lv~~~~lP~t~------sGKvdR~~L~~~~~~~~~~ 1036 (2280)
++.|...... ...+..++.++++|+|. +||+.|+++.+.|++...+
T Consensus 545 ~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~ 600 (614)
T PRK08180 545 RERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEA 600 (614)
T ss_pred HHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHH
Confidence 8887764310 01344455557788654 5678889998888776543
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=560.73 Aligned_cols=512 Identities=20% Similarity=0.218 Sum_probs=366.9
Q ss_pred CCCCCHHHHHHhhccccccCCceEEEEEc---CCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHh
Q 037878 466 PELSSLDGYLKHWGTHRITQKKTLFTWIN---EEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLD 542 (2280)
Q Consensus 466 ~~~~tl~~~l~~~a~~~~~~d~~A~~~~~---~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e 542 (2280)
++..|+.+++++.+.+. |+++|+.+.. .....++.+||+||.++++++|+.|.+. |+++||+|+|+++|++|
T Consensus 39 ~~~~t~~~~~~~~~~~~--p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~---Gv~~gd~V~i~~~n~~e 113 (660)
T PLN02430 39 SDITTAWDIFSKSVEKY--PDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRAS---GAEPGSRVGIYGSNCPQ 113 (660)
T ss_pred CCCCCHHHHHHHHHHhC--CCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHH
Confidence 56779999999888774 7899987542 1112235689999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch-hhccC--CCCCCCc-cccccccc--
Q 037878 543 FVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS-AVRVG--SWPNLPW-LHTDSWVK-- 616 (2280)
Q Consensus 543 ~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~-- 616 (2280)
|++++|||+++|+++||+++..+.++ +.++++++++++++++..... .+... ..+.+.. +..+....
T Consensus 114 w~~~~lA~~~~G~v~vpl~~~~~~~~-------l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~ 186 (660)
T PLN02430 114 WIVAMEACAAHSLICVPLYDTLGPGA-------VDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEE 186 (660)
T ss_pred HHHHHHHHHHcCCeEEEeccCCCHHH-------HHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHH
Confidence 99999999999999999999999888 889999999999999764321 11100 0011111 11110000
Q ss_pred ---------------cccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH-----cCCCCC
Q 037878 617 ---------------NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-----YKSTSK 676 (2280)
Q Consensus 617 ---------------~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~-----~~~~~~ 676 (2280)
..............+..++|+++|+|||||||.||||++||+|+++.+...... ..++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
T PLN02430 187 SDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHD 266 (660)
T ss_pred hhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCC
Confidence 000000001111223468999999999999999999999999998887765432 146789
Q ss_pred cEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccccc----
Q 037878 677 TVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK---- 752 (2280)
Q Consensus 677 d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~---- 752 (2280)
|++++++|++|.++.... +.++..|++++++.. ++..+.+.+.+.++|++.++|.+++.+.+........
T Consensus 267 d~~ls~lPl~H~~~~~~~-~~~l~~G~~i~~~~~-----~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~ 340 (660)
T PLN02430 267 DVYLSFLPLAHILDRMIE-EYFFRKGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPR 340 (660)
T ss_pred CEEEEeCcHHHHHHHHHH-HHHHHcCCEEEEeCC-----ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHH
Confidence 999999999999998654 456788988877642 6778999999999999999999998876543211000
Q ss_pred -------------------------ccccC----------C-CCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccc
Q 037878 753 -------------------------VRSFD----------L-SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPG 796 (2280)
Q Consensus 753 -------------------------~~~~~----------l-~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~ 796 (2280)
....+ + +++|.+++||+++++++.+ |.+.+ ..+.++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~-~~~~~-----~~~~i~~~ 414 (660)
T PLN02430 341 RRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEE-FLRVT-----SCAFVVQG 414 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHH-HHHHh-----cCCCeeee
Confidence 00001 1 6899999999999999754 44443 24569999
Q ss_pred cCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEc-CCCCcccCCCCCeeEEEEcCCCcccccCCCchh
Q 037878 797 YGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN-PETSEEIGEPGKEGEVWISSPSAGIGYWGREEL 875 (2280)
Q Consensus 797 YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd-~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~ 875 (2280)
||+||++..+++..... ....|++|+|.|+++++|+| ++++....+.+..|||+|+||+++.|||++|+.
T Consensus 415 YG~TE~~~~~~~~~~~~---------~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~ 485 (660)
T PLN02430 415 YGLTETLGPTTLGFPDE---------MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPEL 485 (660)
T ss_pred cchhhhhhceEeecccc---------CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHH
Confidence 99999987665432111 11247899999999999987 444333345667899999999999999999999
Q ss_pred hHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCcCCceeEEEeccccc
Q 037878 876 SQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEV 953 (2280)
Q Consensus 876 t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~ 953 (2280)
|+++|. +|||||||+|+++ ||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+ |+|++...
T Consensus 486 t~~~~~--------dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~---~~V~G~~~-- 552 (660)
T PLN02430 486 TEEVMK--------DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVED---IWVYGDSF-- 552 (660)
T ss_pred hhhhhh--------ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeE---EEEEecCC--
Confidence 999984 3899999999997 9999999999999998 6999999999999999999975 77777221
Q ss_pred cccccccccCCCCceEEEEEEEec--------CCC-------CCCHHHHHHHHHHHHHh-----cCcceeEEEEe-cCCC
Q 037878 954 LSTKGISVSDGSDQVGLVVIAEVR--------DGK-------PVDKDVIENIKTRVVEE-----HGVTVASVKLI-KPRT 1012 (2280)
Q Consensus 954 ~~~~~~~~~~~~~~~~~vv~~~~~--------~~~-------~~~~~l~~~l~~~l~~~-----~~~~~~~~~lv-~~~~ 1012 (2280)
....+++++. ... .+. ....++.+.+.+.+.+. +.....+..+. ..+.
T Consensus 553 ----------~~~~~A~vv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~ 621 (660)
T PLN02430 553 ----------KSMLVAVVVP-NEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKP 621 (660)
T ss_pred ----------cceEEEEEEc-CHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCC
Confidence 0112223322 110 000 01123444444444332 33222222222 2233
Q ss_pred c-----cCCCCcccchHHHHHHhhcCC
Q 037878 1013 M-----SKTTSGKIKRFECLKQFVDGT 1034 (2280)
Q Consensus 1013 l-----P~t~sGKvdR~~L~~~~~~~~ 1034 (2280)
+ .+|+++|+.|+.+.+.|.+..
T Consensus 622 ~~~~~g~lT~t~K~~R~~i~~~y~~~i 648 (660)
T PLN02430 622 FDVERDLVTATLKKRRNNLLKYYQVEI 648 (660)
T ss_pred CCCcCCcCChhhhhhhHHHHHHHHHHH
Confidence 3 489999999999999987654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=609.18 Aligned_cols=511 Identities=21% Similarity=0.269 Sum_probs=390.3
Q ss_pred CCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHH
Q 037878 466 PELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVD 545 (2280)
Q Consensus 466 ~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~v 545 (2280)
+...++.+++++.+++ +|+++|+... .+ +++||+||+++++++|+.|.+ ++++||+|+++++|++++++
T Consensus 612 ~~~~~l~~~~~~~a~~--~p~~~a~~~~--~~---~~~Ty~el~~~~~~~a~~L~~----~~~~g~~V~i~~~n~~~~~~ 680 (1146)
T PRK08633 612 EALPPLAEAWIDTAKR--NWSRLAVADS--TG---GELSYGKALTGALALARLLKR----ELKDEENVGILLPPSVAGAL 680 (1146)
T ss_pred CCCCCHHHHHHHHHHh--cCCCcEEEcC--CC---CcCcHHHHHHHHHHHHHHHHH----hCCCCCeEEEECCCchHHHH
Confidence 3456788999888876 4899998632 22 479999999999999999975 48999999999999999999
Q ss_pred HHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC----CCCC-CCcccccccccccc-
Q 037878 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG----SWPN-LPWLHTDSWVKNSK- 619 (2280)
Q Consensus 546 a~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~- 619 (2280)
++|||+++|++++|+++..+.++ +.+++++++++.++++....+.+... ..+. ...+..++......
T Consensus 681 ~~la~~~~G~v~v~l~~~~~~~~-------~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1146)
T PRK08633 681 ANLALLLAGKVPVNLNYTASEAA-------LKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISK 753 (1146)
T ss_pred HHHHHHHcCCEEEEeCCCcCHHH-------HHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccch
Confidence 99999999999999999999888 88999999999999987654433210 0010 01111111100000
Q ss_pred -----cc-----ccc---cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCch
Q 037878 620 -----NL-----LAE---NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQY 686 (2280)
Q Consensus 620 -----~~-----~~~---~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~ 686 (2280)
.. .+. .........++|+++|+|||||||.||||++||+++.+.+......++..++|++++.+|++
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 833 (1146)
T PRK08633 754 VDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFF 833 (1146)
T ss_pred hHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHH
Confidence 00 000 00001345689999999999999999999999999999998888888999999999999999
Q ss_pred hhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEE
Q 037878 687 HDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMV 766 (2280)
Q Consensus 687 h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~ 766 (2280)
|.+++...++.++..|+++++.+. . .++..+++.++++++|++..+|++++.+.+.... .+.+++++|.+++
T Consensus 834 h~~g~~~~~~~~l~~g~~~v~~~~-~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~lr~~~~ 905 (1146)
T PRK08633 834 HSFGLTVTLWLPLLEGIKVVYHPD-P--TDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL-----HPLMFASLRLVVA 905 (1146)
T ss_pred HHHhHHHHHHHHHHCCCEEEEeCC-C--CCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc-----CcccCCCeeeEEE
Confidence 999998778999999999887653 2 3889999999999999999999999887754322 2256889999999
Q ss_pred ecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCC
Q 037878 767 AAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846 (2280)
Q Consensus 767 gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~ 846 (2280)
|||++++++.+++.+.+ +++++|.||+||++.+++.............+.....+++|+|+||++++|+|++++
T Consensus 906 gg~~~~~~~~~~~~~~~------g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~ 979 (1146)
T PRK08633 906 GAEKLKPEVADAFEEKF------GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETF 979 (1146)
T ss_pred cCCcCCHHHHHHHHHHh------CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCC
Confidence 99999999999998874 467999999999987765432211000000001123578999999999999998765
Q ss_pred cccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeech
Q 037878 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYS 925 (2280)
Q Consensus 847 ~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~ 925 (2280)
.+ +|+|+.|||+++|++++.||+|+|+.|++.|.+ .++++||+|||+|+++ ||.++++||+||+||++|+||+|
T Consensus 980 ~~-~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~----~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~ 1054 (1146)
T PRK08633 980 EE-LPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKD----IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPL 1054 (1146)
T ss_pred cc-CCCCCceEEEEcCCCccccccCCccchHHHhhc----CCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECH
Confidence 44 479999999999999999999999999998864 2466999999999997 99999999999999999999999
Q ss_pred HHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEE
Q 037878 926 ADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASV 1005 (2280)
Q Consensus 926 ~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 1005 (2280)
.|||++|.+||++. ..+++|++++++..+ +.+.+++ .. +....+++.+.++++..+.++.| .
T Consensus 1055 ~eiE~~l~~~~~~~-~~~~~v~~~~~~~~g----------~~~~~~v--~~--~~~~~~~l~~~~~~~~l~~~~~P---~ 1116 (1146)
T PRK08633 1055 GAVEEELAKALGGE-EVVFAVTAVPDEKKG----------EKLVVLH--TC--GAEDVEELKRAIKESGLPNLWKP---S 1116 (1146)
T ss_pred HHHHHHHHhccCCC-CceEEEEeccCCCCC----------cEEEEEE--ec--CccCHHHHHHHHHhcCCCcccCC---c
Confidence 99999999999642 235888888876433 1222222 21 22223455555544222234444 4
Q ss_pred EEecCCCccCCCCcccchHHHHHHhh
Q 037878 1006 KLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 1006 ~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.++.++++|+|++||+||++|++...
T Consensus 1117 ~i~~~~~iP~t~~GKi~r~~L~~~~~ 1142 (1146)
T PRK08633 1117 RYFKVEALPLLGSGKLDLKGLKELAL 1142 (1146)
T ss_pred EEEEecCcCCCCCCCCcHHHHHHHHH
Confidence 45566999999999999999987643
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=548.07 Aligned_cols=489 Identities=21% Similarity=0.281 Sum_probs=383.3
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+.+++++++. |+++|+.+.+ +.+||.||.++++++|..|.+. |+++|++|+++++|++++++++|
T Consensus 2 ~~~~~~~~~~~~~~--~~~~a~~~~~------~~~ty~el~~~v~~~a~~L~~~---g~~~~~~v~i~~~~~~~~~~~~l 70 (497)
T PRK06145 2 FNLSASIAFHARRT--PDRAALVYRD------QEISYAEFHQRILQAAGMLHAR---GIGQGDVVALLMKNSAAFLELAF 70 (497)
T ss_pred ccHHHHHHHHHHHC--CCceEEEECC------cceeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHH
Confidence 35678888888764 8999987642 4799999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccc---ccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNS---KNLLAEN 625 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 625 (2280)
||+++|++++|+++..+.++ +..++++++++.++++.+........ ......+...... .......
T Consensus 71 a~~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
T PRK06145 71 AASYLGAVFLPINYRLAADE-------VAYILGDAGAKLLLVDEEFDAIVALE----TPKIVIDAAAQADSRRLAQGGLE 139 (497)
T ss_pred HHHhcCcEEEecccccCHHH-------HHHHHHhcCCcEEEEccchhhhhhcc----cceEEecCcccchhHHHhccCCC
Confidence 99999999999999998887 88999999999999876543221100 0001111000000 0000000
Q ss_pred ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceE
Q 037878 626 VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTA 705 (2280)
Q Consensus 626 ~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~ 705 (2280)
........++++++++|||||||.||||++||+++...+......++...+++++..+|++|.+++....+.++..|+++
T Consensus 140 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~ 219 (497)
T PRK06145 140 IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTL 219 (497)
T ss_pred CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEE
Confidence 11122356789999999999999999999999999877766677788899999999999999998877677888999998
Q ss_pred EEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcC
Q 037878 706 ILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785 (2280)
Q Consensus 706 vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~ 785 (2280)
++.+. .++..+++.++++++|++.++|+++..++..... ...+++++|.+++|||++++++++++.+.+
T Consensus 220 ~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~-----~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-- 288 (497)
T PRK06145 220 RIHRE----FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR-----DRFDLDSLAWCIGGGEKTPESRIRDFTRVF-- 288 (497)
T ss_pred EECCc----CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc-----cccccccceEEEecCCCCCHHHHHHHHHHc--
Confidence 87653 3899999999999999999999999888754322 124578999999999999999999998875
Q ss_pred CCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCc
Q 037878 786 FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSA 865 (2280)
Q Consensus 786 ~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v 865 (2280)
++..+++.||+||++..++....... ....+++|+|+++++++++|+++ ..++.|+.|||+++|+.+
T Consensus 289 ---~~~~v~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~~~~~--~~~~~~~~Gel~v~g~~~ 355 (497)
T PRK06145 289 ---TRARYIDAYGLTETCSGDTLMEAGRE--------IEKIGSTGRALAHVEIRIADGAG--RWLPPNMKGEICMRGPKV 355 (497)
T ss_pred ---CCCceEEeecCcccCCcceeccCccc--------cccCCCcccCCCCceEEEECCCC--CCCCCCCceEEEEECcch
Confidence 45789999999999876554321110 11236789999999999999765 345789999999999999
Q ss_pred ccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCcee
Q 037878 866 GIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCC 944 (2280)
Q Consensus 866 ~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~a 944 (2280)
+.||+++++.|++.|.+ +||+|||+++++ ||.++++||+||+||++|++|+|.|||++|.++|+|.+ +
T Consensus 356 ~~Gy~~~~~~~~~~~~~--------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~---~ 424 (497)
T PRK06145 356 TKGYWKDPEKTAEAFYG--------DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAE---A 424 (497)
T ss_pred hhhhcCChHHHHHHHhC--------CCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeE---E
Confidence 99999999999999853 799999999997 99999999999999999999999999999999999865 8
Q ss_pred EEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccch
Q 037878 945 AVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023 (2280)
Q Consensus 945 aVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR 1023 (2280)
+|++.+++..+ +....+++ ..++. ....++.+.+++++.. +++| ..++.+++||+|++||++|
T Consensus 425 ~v~~~~~~~~~----------~~~~~~v~--~~~~~~~~~~~l~~~~~~~l~~-~~~p---~~i~~v~~iP~t~~GKi~r 488 (497)
T PRK06145 425 AVIGVHDDRWG----------ERITAVVV--LNPGATLTLEALDRHCRQRLAS-FKVP---RQLKVRDELPRNPSGKVLK 488 (497)
T ss_pred EEEecCCCccC----------ceEEEEEE--ECCCCCCCHHHHHHHHHHhhhc-CCCC---CEEEEeccCCCCCcccccH
Confidence 88887665332 22222222 22222 2235667777777664 4444 4555669999999999999
Q ss_pred HHHHHHh
Q 037878 1024 FECLKQF 1030 (2280)
Q Consensus 1024 ~~L~~~~ 1030 (2280)
++|++++
T Consensus 489 ~~l~~~~ 495 (497)
T PRK06145 489 RVLRDEL 495 (497)
T ss_pred HHHHHHh
Confidence 9998875
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=551.46 Aligned_cols=494 Identities=22% Similarity=0.314 Sum_probs=379.2
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++.++. .|+++|+.+.++.....+.+||+||+++++++|++|++. |+++||+|+++++|+.++++++|
T Consensus 22 ~~~~~~~~~~~~~--~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~---g~~~g~~V~i~~~~~~~~~~~~l 96 (538)
T TIGR03208 22 RTINDHFDAAVAN--CPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARL---GVGRGDVVSFQLPNRWEFTALYL 96 (538)
T ss_pred CcHHHHHHHHHHH--CCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHH
Confidence 5788889888876 489999886533222236899999999999999999988 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh-----hc--cCCCCCCC-cccccc-----cc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA-----VR--VGSWPNLP-WLHTDS-----WV 615 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~-----~~--~~~~~~~~-~~~~~~-----~~ 615 (2280)
||+++|+++||+++..+.++ +.++++++++++++++...... .. ....+... .+..+. +.
T Consensus 97 a~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (538)
T TIGR03208 97 ACARIGAVLNPLMPIFRERE-------LSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFD 169 (538)
T ss_pred HHHhcCEEEeccCcccCHHH-------HHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHH
Confidence 99999999999999998887 8899999999999997653210 00 00011110 000000 00
Q ss_pred ---cccc-ccccc--cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhh
Q 037878 616 ---KNSK-NLLAE--NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDM 689 (2280)
Q Consensus 616 ---~~~~-~~~~~--~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 689 (2280)
.... ..... .........++++++|+|||||||.||||+++|+++...+......+++..++++++++|++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 249 (538)
T TIGR03208 170 RVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQT 249 (538)
T ss_pred HHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHH
Confidence 0000 00000 00011235679999999999999999999999999999988888888899999999999999999
Q ss_pred hHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecC
Q 037878 690 GLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAE 769 (2280)
Q Consensus 690 gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe 769 (2280)
+++..++.+++.|+++++.+ ..++..+++.++++++|++.++|..+..+....... ..+++++|.+++||+
T Consensus 250 g~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~~~~gG~ 320 (538)
T TIGR03208 250 GFMYGLMMPLILNATAVLQD----IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKES-----GAPVPSLFTFLCAGA 320 (538)
T ss_pred HHHHHHHHHHHcCCEEEecC----ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhcc-----CCCCCcceEEEEcCC
Confidence 98888999999999988864 238999999999999999999999888776543221 145789999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCccc
Q 037878 770 PVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849 (2280)
Q Consensus 770 ~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~ 849 (2280)
++++++.+++.+.+ ++.++|.||+||++.+++...... ......++|+|+|+++++|+|+++ ..
T Consensus 321 ~~~~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~~G~~~~g~~v~i~~~~~--~~ 384 (538)
T TIGR03208 321 PIPGILVERAWELL------GALIVSAWGMTENGAVTVTEPDDA--------LEKASTTDGRPLPGVEVKVIDANG--AK 384 (538)
T ss_pred CCCHHHHHHHHHHc------CCeEEeeeccCcCCCccccCcccc--------hhhccCcccccCCCCEEEEECCCC--CC
Confidence 99999999988764 467999999999987655332111 011235689999999999999775 34
Q ss_pred CCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHH
Q 037878 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADV 928 (2280)
Q Consensus 850 ~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EI 928 (2280)
++.|+.|||+|+|++++.||+++|+.|+. .+++||+|||+|+++ ||.++++||+||+||++|++|+|.||
T Consensus 385 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~---------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eI 455 (538)
T TIGR03208 385 LSQGETGRLLVRGCSNFGGYLKRPHLNST---------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEI 455 (538)
T ss_pred CcCCCCcEEEEecCcccccccCCcccccc---------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHH
Confidence 57999999999999999999999987642 135899999999997 99999999999999999999999999
Q ss_pred HHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHH-HHHHhcCcceeEEE
Q 037878 929 EKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKT-RVVEEHGVTVASVK 1006 (2280)
Q Consensus 929 E~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~-~l~~~~~~~~~~~~ 1006 (2280)
|++|.+||+|.+ ++|++.+++..+ ....+++. ...+...+ .++.+.+++ ++.. ++.|. .
T Consensus 456 E~~l~~~~~v~~---~~v~~~~~~~~g----------~~~~a~v~--~~~~~~~~~~~l~~~~~~~~l~~-~~~P~---~ 516 (538)
T TIGR03208 456 ENLLYQHPAVAQ---VAIVAYPDERLG----------ERACAVVV--PKPGCTLDFAAMVAFLKAQKVAL-QYIPE---R 516 (538)
T ss_pred HHHHhcCcceee---EEEEeccCCCCC----------ceEEEEEE--ECCCCCCCHHHHHHHHHhcchhh-ccCCc---E
Confidence 999999999875 888887765432 22222322 22222222 456666664 3443 44443 4
Q ss_pred EecCCCccCCCCcccchHHHH
Q 037878 1007 LIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 1007 lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
++.++++|+|++||++|++|+
T Consensus 517 i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 517 LEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred EEEeccCCCCCccccchHhhc
Confidence 555699999999999999864
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=553.70 Aligned_cols=503 Identities=22% Similarity=0.280 Sum_probs=380.0
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
.++..++.+++.+.+++. |+++|+.... ++ +.+||+||.++++++|+.|++. |+++||+|+++++|+++++
T Consensus 24 ~~~~~~~~~~l~~~a~~~--p~~~a~~~~~-~~---~~~Ty~~l~~~~~~la~~L~~~---g~~~g~~V~i~~~~~~~~~ 94 (546)
T PLN02330 24 VPDKLTLPDFVLQDAELY--ADKVAFVEAV-TG---KAVTYGEVVRDTRRFAKALRSL---GLRKGQVVVVVLPNVAEYG 94 (546)
T ss_pred CCCCCcHHHHHhhhhhcC--CCccEEEecC-CC---CcccHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCchHHH
Confidence 345678899998888774 8899986432 22 5799999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccc--------ccc
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDS--------WVK 616 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 616 (2280)
++++||+++|++++|+++..+.++ +.++++++++++++++........... ...+..+. +..
T Consensus 95 ~~~lA~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~ 164 (546)
T PLN02330 95 IVALGIMAAGGVFSGANPTALESE-------IKKQAEAAGAKLIVTNDTNYGKVKGLG---LPVIVLGEEKIEGAVNWKE 164 (546)
T ss_pred HHHHHHHHhCcEeccCCccCCHHH-------HHHHHHhcCCeEEEEccchhhhHhhcC---CcEEEecCCCCCCcccHHH
Confidence 999999999999999999998887 889999999999999876544332111 01111000 000
Q ss_pred cccccc-cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC--CCCCcEEEEEcCchhhhhHHH
Q 037878 617 NSKNLL-AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK--STSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 617 ~~~~~~-~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
...... ...........++++++|+|||||||.||||+++|+++...+........ ....++.+.++|++|.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~ 244 (546)
T PLN02330 165 LLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITG 244 (546)
T ss_pred HHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHH
Confidence 000000 00001122345789999999999999999999999999876643221111 123568899999999999887
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCC--CccEEEEecCCC
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS--SMKFLMVAAEPV 771 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~--~Lr~l~~gGe~l 771 (2280)
.++.++..|+++++.+. .++..+++.++++++|.+..+|+++..+....... ..+++ ++|.+++||+++
T Consensus 245 ~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-----~~~~~~~~l~~i~~~g~~l 315 (546)
T PLN02330 245 ICCATLRNKGKVVVMSR----FELRTFLNALITQEVSFAPIVPPIILNLVKNPIVE-----EFDLSKLKLQAIMTAAAPL 315 (546)
T ss_pred HHHHHhhcCCEEEEecc----cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcccc-----ccccchheeeeEEEcCCcC
Confidence 88899999999888653 28899999999999999999999888876532211 12233 479999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCC
Q 037878 772 RQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGE 851 (2280)
Q Consensus 772 ~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p 851 (2280)
++++.++|.+.+ +++.+++.||+||++.++......... .+....+++|.|+||++++|+|++++ ..+|
T Consensus 316 ~~~~~~~~~~~~-----~~~~~~~~YG~tE~~~~~~~~~~~~~~-----~~~~~~~~vG~~~~~~~v~i~d~~~~-~~~p 384 (546)
T PLN02330 316 APELLTAFEAKF-----PGVQVQEAYGLTEHSCITLTHGDPEKG-----HGIAKKNSVGFILPNLEVKFIDPDTG-RSLP 384 (546)
T ss_pred CHHHHHHHHHHc-----CCCeEEecccccccccceecCCCcccc-----ccccccCccccccCCcEEEEEeCCCC-ccCC
Confidence 999999999875 467899999999997654322111100 01122367899999999999997655 4458
Q ss_pred CCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHH
Q 037878 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEK 930 (2280)
Q Consensus 852 ~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~ 930 (2280)
.|+.|||+|+|++++.||+|+++.+++.|.. ++||+|||+|+++ ||.++|+||+||+||++|+||+|.|||+
T Consensus 385 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~ 457 (546)
T PLN02330 385 KNTPGELCVRSQCVMQGYYNNKEETDRTIDE-------DGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEA 457 (546)
T ss_pred CCCceEEEEecchhhhhhccCccchhhhccC-------CCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHH
Confidence 9999999999999999999999999887742 5899999999997 9999999999999999999999999999
Q ss_pred HHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEec
Q 037878 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIK 1009 (2280)
Q Consensus 931 ~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~ 1009 (2280)
+|.++++|.+ ++|++++++..+ ....+++.. .++. ...+++.+.+++++.. ++ .|..++.
T Consensus 458 ~l~~~~~v~~---~~v~~~~~~~~g----------~~~~a~v~~--~~~~~~~~~~l~~~~~~~l~~-~~---~p~~~~~ 518 (546)
T PLN02330 458 ILLTHPSVED---AAVVPLPDEEAG----------EIPAACVVI--NPKAKESEEDILNFVAANVAH-YK---KVRVVQF 518 (546)
T ss_pred HHHhCCchhe---EEEEeccccccC----------ceeEEEEEE--CCCCCCCHHHHHHHHHHhccc-cc---CceEEEE
Confidence 9999999875 888887765432 222223222 2222 2224556666665543 33 4444555
Q ss_pred CCCccCCCCcccchHHHHHHhhc
Q 037878 1010 PRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1010 ~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+++||+|.+||++|++|++++..
T Consensus 519 v~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 519 VDSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred eccCCCCCCcceeHHHHHHHHHh
Confidence 69999999999999999988743
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=545.13 Aligned_cols=480 Identities=16% Similarity=0.176 Sum_probs=376.7
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
+++.+.+++++++ .|+++|+.+.+ +++||.||.++++++|+.|.+. | .+||+|+|+++|++++++++|
T Consensus 1 ~~~~~~~~~~a~~--~p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~---~-~~~~~v~i~~~~~~~~~~~~l 68 (487)
T PRK07638 1 MGITKEYKKHASL--QPNKIAIKEND------RVLTYKDWFESVCKVANWLNEK---E-SKNKTIAILLENRIEFLQLFA 68 (487)
T ss_pred CChHHHHHHHHHh--CCCCeEEecCC------cEeeHHHHHHHHHHHHHHHHHh---C-CCCCEEEEEcCCCHHHHHHHH
Confidence 3567788888876 48999987532 4799999999999999999988 6 489999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+++|++++|+++..+.++ +..+++.++++.++++......+.. .....+..+.+....... .....
T Consensus 69 a~~~~G~~~v~l~~~~~~~~-------~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~ 136 (487)
T PRK07638 69 GAAMAGWTCVPLDIKWKQDE-------LKERLAISNADMIVTERYKLNDLPD---EEGRVIEIDEWKRMIEKY--LPTYA 136 (487)
T ss_pred HHHHcCeEEEecCccCCHHH-------HHHHHHhCCCCEEEEecccccchhh---ccceEEEehhhhhhhhhc--ccccc
Confidence 99999999999999998887 7889999999999998654332221 111112222211110000 00011
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
......+++++|+|||||||.||||+++|++++..+......+++.++|+++...|++|+.++ ..++.++..|+++++.
T Consensus 137 ~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~ 215 (487)
T PRK07638 137 PIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLM 215 (487)
T ss_pred ccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEc
Confidence 112235678999999999999999999999999998888888889999999999999999876 5678899999999886
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
+. .+|..+++.++++++|++.++|+++..+.+.. ....+.+.++++|+++++++.+++.+.+
T Consensus 216 ~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~~~~~~~G~~l~~~~~~~~~~~~----- 277 (487)
T PRK07638 216 RK----FIPNQVLDKLETENISVMYTVPTMLESLYKEN---------RVIENKMKIISSGAKWEAEAKEKIKNIF----- 277 (487)
T ss_pred CC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc---------CcCCceeEEEEcCCCCCHHHHHHHHHHc-----
Confidence 53 38999999999999999999999998887541 1133556678899999999999998875
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++++++|.||+||++.++...... . ....+++|+|+++++++|+|+++ ..+|+|+.|||+|+|+.++.|
T Consensus 278 ~~~~~~~~YG~tE~~~~~~~~~~~-~--------~~~~~~~G~~~~~~~~~i~d~~g--~~~~~g~~Gel~v~~~~~~~g 346 (487)
T PRK07638 278 PYAKLYEFYGASELSFVTALVDEE-S--------ERRPNSVGRPFHNVQVRICNEAG--EEVQKGEIGTVYVKSPQFFMG 346 (487)
T ss_pred CCCeEEEEecCCccCceEEecccc-c--------CCCCCCCCcccCCcEEEEECCCC--CCCCCCCCeEEEEecccceee
Confidence 478899999999998765543211 0 11246789999999999999875 345799999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEE
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv 947 (2280)
|+++++.+.+.+. ++||+|||+++++ ||.++++||+||+||++|++|+|.|||++|.++|+|.+ |+|+
T Consensus 347 y~~~~~~~~~~~~--------~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~---~~v~ 415 (487)
T PRK07638 347 YIIGGVLARELNA--------DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDE---IVVI 415 (487)
T ss_pred ecCCHHHHhhhcc--------CCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeee---EEEE
Confidence 9999988765432 4899999999997 99999999999999999999999999999999999875 8888
Q ss_pred eccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 948 GVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
+.+++..+ ....+++. . .....++.+.+++.+.. +++|. .++.+++||+|++||++|++|+
T Consensus 416 ~~~~~~~g----------~~~~~~v~--~---~~~~~~l~~~~~~~l~~-~~~p~---~i~~v~~iP~t~~GKv~r~~L~ 476 (487)
T PRK07638 416 GVPDSYWG----------EKPVAIIK--G---SATKQQLKSFCLQRLSS-FKIPK---EWHFVDEIPYTNSGKIARMEAK 476 (487)
T ss_pred ecCchhcC----------CeeEEEEE--C---CCCHHHHHHHHHHHhhc-ccCCc---EEEEecccCCCCcccccHHHHH
Confidence 88775432 12222221 1 22335677778777765 55443 4445599999999999999998
Q ss_pred HHhhc
Q 037878 1028 KQFVD 1032 (2280)
Q Consensus 1028 ~~~~~ 1032 (2280)
+++.+
T Consensus 477 ~~~~~ 481 (487)
T PRK07638 477 SWIEN 481 (487)
T ss_pred HHHhc
Confidence 88654
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=547.46 Aligned_cols=498 Identities=19% Similarity=0.250 Sum_probs=381.4
Q ss_pred HHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHH
Q 037878 471 LDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGC 550 (2280)
Q Consensus 471 l~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~ 550 (2280)
+.+.+++.+.. .|+++|+...+ +++||+||.++++++|+.|.+. |+++||+|+++++|+.++++++|||
T Consensus 2 ~~~~l~~~a~~--~p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~---g~~~~~~V~i~~~~~~~~~~~~la~ 70 (502)
T TIGR01734 2 LIEAIQAFAET--YPQTIAYRYQG------QELTYQQLKEQSDRLAAFIQKR---ILPKKSPIIVYGHMEPHMLVAFLGS 70 (502)
T ss_pred HHHHHHHHHHH--CCCceEEEcCC------cEEeHHHHHHHHHHHHHHHHHh---CCCCCCeEEEEeCCCHHHHHHHHHH
Confidence 56778877776 47888886432 4799999999999999999998 8999999999999999999999999
Q ss_pred HHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccC
Q 037878 551 MRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFT 630 (2280)
Q Consensus 551 l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (2280)
+++|++++|+++..+.++ +..+++..+++.++++........ ....+..+.... ..... .......
T Consensus 71 ~~~G~~~v~~~~~~~~~~-------~~~~~~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~-~~~~~~~ 136 (502)
T TIGR01734 71 IKSGHAYIPVDTSIPSER-------IEMIIEAAGPELVIHTAELSIDAV-----GTQIITLSALEQ-AETSG-GPVSFDH 136 (502)
T ss_pred HHhCCEEeCCCCcChHHH-------HHHHHHhcCCCEEEeccccccccc-----CCceEEchHhhh-hhhhc-CCccccc
Confidence 999999999999999887 889999999999999765432221 111111111000 00000 0001112
Q ss_pred CCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCc
Q 037878 631 ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSP 710 (2280)
Q Consensus 631 ~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~ 710 (2280)
...+++.++|+|||||||.||||+++|+++...+.+....++...+++++.+.|++|+.++ ..++.++..|+++++.++
T Consensus 137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~ 215 (502)
T TIGR01734 137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDK 215 (502)
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCH
Confidence 3467899999999999999999999999999999888888899999999999999999987 467889999999998765
Q ss_pred cccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCC
Q 037878 711 LTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQ 790 (2280)
Q Consensus 711 ~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~ 790 (2280)
.. ..++..+++.+.++++|.+..+|.++..++..... ...+++++|.++++|+++++++.+++.+.+ ++
T Consensus 216 ~~-~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~-----~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~-----~~ 284 (502)
T TIGR01734 216 DI-TNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF-----NQENYPHLTHFLFCGEELPVKTAKALLERF-----PK 284 (502)
T ss_pred HH-hcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc-----ccccCCcccEEEEcCCcCCHHHHHHHHHHC-----CC
Confidence 32 34889999999999999999999988766543211 124578999999999999999999999875 57
Q ss_pred cccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccC
Q 037878 791 GVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYW 870 (2280)
Q Consensus 791 ~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~ 870 (2280)
+.+++.||+||++..++........ .......++|.|.|+++++|+|+++ ..++.|+.|||+++|+.++.||+
T Consensus 285 ~~~~~~yG~tE~~~~~~~~~~~~~~-----~~~~~~~~vg~~~~~~~~~i~~~~~--~~~~~g~~Gel~v~g~~~~~gy~ 357 (502)
T TIGR01734 285 ATIYNTYGPTEATVAVTSVKITQEI-----LDQYPRLPIGFAKPDMNLFIMDEEG--EPLPEGEKGEIVIVGPSVSKGYL 357 (502)
T ss_pred cEEEeCccCCcceEEEEEEEccccc-----cccCCccccccccCCCEEEEECCCC--CCCCCCCeeEEEEcccccccccc
Confidence 8899999999987654432211111 0112235689999999999999875 44579999999999999999999
Q ss_pred CCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEecc
Q 037878 871 GREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVP 950 (2280)
Q Consensus 871 ~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~ 950 (2280)
++|+.|.+.|.. .++.+||+|||+|+++++.++++||.||+||++|++|+|.|||++|.++|+|.+ |+++++.
T Consensus 358 ~~~~~~~~~~~~----~~~~~~~~TGDlg~~~~~~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~---~~vv~~~ 430 (502)
T TIGR01734 358 NNPEKTAEAFFS----HEGQPAYRTGDAGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIES---AVVVPKY 430 (502)
T ss_pred CCcccchHhhee----CCCcEEEECCCEEEEECCEEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccE---EEEEEEE
Confidence 999999988853 245689999999999866999999999999999999999999999999999865 7777643
Q ss_pred ccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 951 EEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
++. + .....+++++ ..+.. ....++.+.+++.+.+.++....|..++.++++|+|++||++|++|+++
T Consensus 431 ~~~--~------~~~~~~~~v~---~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~ 499 (502)
T TIGR01734 431 NKD--H------KVEYLIAAIV---PETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEE 499 (502)
T ss_pred cCC--C------CceEEEEEEE---ecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHh
Confidence 110 0 0011222222 22111 1112333445555554444445556666779999999999999999887
Q ss_pred h
Q 037878 1030 F 1030 (2280)
Q Consensus 1030 ~ 1030 (2280)
+
T Consensus 500 ~ 500 (502)
T TIGR01734 500 V 500 (502)
T ss_pred h
Confidence 5
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=545.80 Aligned_cols=479 Identities=19% Similarity=0.275 Sum_probs=377.7
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
+++.++|++++.+. ||++|+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+.++++++|
T Consensus 2 ~~~~~~l~~~a~~~--p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~---g~~~~~~v~i~~~~~~~~~~~~l 70 (483)
T PRK03640 2 ETMPNWLKQRAFLT--PDRTAIEFEE------KKVTFMELHEAVVSVAGKLAAL---GVKKGDRVALLMKNGMEMILVIH 70 (483)
T ss_pred CcHHHHHHHHHHhC--CCceEEEeCC------eeeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHH
Confidence 47888999988874 8999987543 5899999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+++|++++|+++..+.++ +..++++++++.++++........... . ...++..... ......
T Consensus 71 a~~~~G~~~v~i~~~~~~~~-------~~~~~~~~~~~~vi~~~~~~~~~~~~~--~---~~~~~~~~~~----~~~~~~ 134 (483)
T PRK03640 71 ALQQLGAVAVLLNTRLSREE-------LLWQLDDAEVKCLITDDDFEAKLIPGI--S---VKFAELMNGP----KEEAEI 134 (483)
T ss_pred HHHhCCcEEEecCcCCCHHH-------HHHHHHhCCCCEEEEcchhhHHHhhhc--c---ccHHHHhhcc----cccCCC
Confidence 99999999999999988887 788999999999999765443221110 0 0111111100 011111
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++++++|+|||||||.||+|++||+++...+......++++++|++++.+|++|..++. .++.++..|+++++.
T Consensus 135 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~ 213 (483)
T PRK03640 135 QEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLS-ILMRSVIYGMRVVLV 213 (483)
T ss_pred CCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHH-HHHHHHhcCCEEEec
Confidence 2234678999999999999999999999999988877777778899999999999999999874 578889999999887
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
+. .++..+++.++++++|++.++|+++..+....... ....++|.+++||+++++++++++.+.
T Consensus 214 ~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------~~~~~lr~~~~~g~~~~~~~~~~~~~~------ 277 (483)
T PRK03640 214 EK----FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG------TYPSSFRCMLLGGGPAPKPLLEQCKEK------ 277 (483)
T ss_pred CC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc------ccCCcceEEEEcCCCCCHHHHHHHHHh------
Confidence 63 38999999999999999999999998887543221 223689999999999999999887763
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++.+++.||+||++..++....... ....+++|+|+++++++|.|+. ..++.|+.|||+++||+++.|
T Consensus 278 -~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~vG~p~~~~~~~i~~~~---~~~~~g~~Gel~v~g~~~~~g 345 (483)
T PRK03640 278 -GIPVYQSYGMTETASQIVTLSPEDA--------LTKLGSAGKPLFPCELKIEKDG---VVVPPFEEGEIVVKGPNVTKG 345 (483)
T ss_pred -CCCeeeeeccCcccccccccCcccc--------cccCCCcccccCCcEEEEecCC---CcCCCCCceEEEEECcchhhh
Confidence 4679999999998754332111100 1124789999999999999863 345789999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEE
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv 947 (2280)
|+++|+.++++|. ++||+|||+++++ ||.++++||+||++|++|++|+|.|||+++.++++|.+ ++|+
T Consensus 346 y~~~~~~~~~~~~--------~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~---~~v~ 414 (483)
T PRK03640 346 YLNREDATRETFQ--------DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAE---AGVV 414 (483)
T ss_pred hcCCHHHHHHHHh--------cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeE---EEEE
Confidence 9999999999885 3799999999996 99999999999999999999999999999999999865 7777
Q ss_pred eccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 948 GVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
+.+++..+ .....+++ .. .....+++.+.+++.+.. +++| ..++.+++||+|++||+||++|+
T Consensus 415 ~~~~~~~~----------~~~~~~~~--~~-~~~~~~~l~~~~~~~l~~-~~~p---~~i~~~~~iP~t~~gK~~r~~l~ 477 (483)
T PRK03640 415 GVPDDKWG----------QVPVAFVV--KS-GEVTEEELRHFCEEKLAK-YKVP---KRFYFVEELPRNASGKLLRHELK 477 (483)
T ss_pred eCCCcccC----------CceEEEEE--eC-CCCCHHHHHHHHHHhccC-CCCC---cEEEEeCCCCCCCccceeHHHHH
Confidence 76654321 12222222 12 222334566666666654 4444 45555699999999999999999
Q ss_pred HHhh
Q 037878 1028 KQFV 1031 (2280)
Q Consensus 1028 ~~~~ 1031 (2280)
+++.
T Consensus 478 ~~~~ 481 (483)
T PRK03640 478 QLVE 481 (483)
T ss_pred HHHh
Confidence 8865
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=549.51 Aligned_cols=487 Identities=18% Similarity=0.196 Sum_probs=364.7
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCC-CCCCEEEEEeCCCHhHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI-KPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv-~~Gd~V~i~~~~s~e~~va~ 547 (2280)
.++.+++..++ .|+++|+.+.+ ..+||+||.++++++|..|.+. |+ ++||+|+++++|++++++++
T Consensus 3 ~~~~~~l~~~~----~p~~~Al~~~~------~~lTy~el~~~~~~la~~L~~~---g~~~~~~~V~i~~~n~~~~v~~~ 69 (540)
T PRK13388 3 DTIAQLLRDRA----GDDTIAVRYGD------RTWTWREVLAEAAARAAALIAL---ADPDRPLHVGVLLGNTPEMLFWL 69 (540)
T ss_pred hhHHHHHHhhc----cCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHh---cCCCCCCEEEEECCCCcHHHHHH
Confidence 35677776654 37899987532 4799999999999999999998 89 79999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccc-cccccccccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSW-VKNSKNLLAENV 626 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 626 (2280)
+||+++|++++|+||..+.++ +..+++++++++++++......+.....+....+..+.. ....... ....
T Consensus 70 lA~~~~Ga~~v~l~p~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~ 141 (540)
T PRK13388 70 AAAALGGYVLVGLNTTRRGAA-------LAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAA-AGAL 141 (540)
T ss_pred HHHHhCCCEEEEecccCChHH-------HHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhcc-ccCc
Confidence 999999999999999999887 889999999999999765443322111111121111110 0000000 0011
Q ss_pred cccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEE
Q 037878 627 VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAI 706 (2280)
Q Consensus 627 ~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~v 706 (2280)
.+.....++++++|+|||||||+||||+++|+++...+......++...+|+++..+|++|..+++..++.++..|++++
T Consensus 142 ~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v 221 (540)
T PRK13388 142 TPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVA 221 (540)
T ss_pred CCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEE
Confidence 11223567999999999999999999999999999888888888999999999999999999998777777899999988
Q ss_pred EeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCC
Q 037878 707 LFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786 (2280)
Q Consensus 707 l~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~ 786 (2280)
+.+. .++..+++.++++++|++..+|..+..+....... ....+++|. + .|++++++...+|.+.+
T Consensus 222 ~~~~----~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~-----~~~~~~l~~-~-~G~~~~~~~~~~~~~~~--- 287 (540)
T PRK13388 222 LPAK----FSASGFLDDVRRYGATYFNYVGKPLAYILATPERP-----DDADNPLRV-A-FGNEASPRDIAEFSRRF--- 287 (540)
T ss_pred ECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc-----cccccceEE-E-ECCCCCHHHHHHHHHHh---
Confidence 7542 27899999999999999999998887766432111 112345663 3 36667888888888764
Q ss_pred CCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEE-----------EEcCCCCcccCCCCCe
Q 037878 787 GLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIR-----------IVNPETSEEIGEPGKE 855 (2280)
Q Consensus 787 g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~-----------Ivd~~~~~~~~p~G~~ 855 (2280)
+++++|.||+||++.+++... ....+++|+|++|+++. ++|+++ ..+.+.|++
T Consensus 288 ---~~~l~~~YG~tE~~~~~~~~~------------~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g-~~~~~~~~~ 351 (540)
T PRK13388 288 ---GCQVEDGYGSSEGAVIVVREP------------GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHG-ALLNADEAI 351 (540)
T ss_pred ---CCceecccccccccceeecCC------------CCCCCCCCCCCCCcEEEcCCCCccccceeccCcc-ccccCCCcc
Confidence 467999999999987654321 01236789999997653 334332 223345789
Q ss_pred eEEEEc-CCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHH
Q 037878 856 GEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVE 933 (2280)
Q Consensus 856 GEL~i~-Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~ 933 (2280)
|||+++ |++++.||+|+|+.|++.|. ++||+|||+|+++ ||.++++||+||+||++|+||+|.|||++|.
T Consensus 352 GEl~v~~g~~~~~gY~~~~~~t~~~~~--------~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~ 423 (540)
T PRK13388 352 GELVNTAGAGFFEGYYNNPEATAERMR--------HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILL 423 (540)
T ss_pred eEEEEecCCcccccccCChHHHHHHhh--------cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHH
Confidence 999998 99999999999999999884 3799999999997 9999999999999999999999999999999
Q ss_pred hccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHHH--HHHhcCcceeEEEEecC
Q 037878 934 SSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTR--VVEEHGVTVASVKLIKP 1010 (2280)
Q Consensus 934 ~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~~--l~~~~~~~~~~~~lv~~ 1010 (2280)
++|+|.+ |+|++++++..+ ...+++++. .++...+ +++.+.++.+ +.. +++| ..++.+
T Consensus 424 ~~~~V~~---~~v~g~~~~~~g---------~~~~~~v~~---~~~~~~~~~~l~~~l~~~~~l~~-~~~P---~~~~~v 484 (540)
T PRK13388 424 RHPAINR---VAVYAVPDERVG---------DQVMAALVL---RDGATFDPDAFAAFLAAQPDLGT-KAWP---RYVRIA 484 (540)
T ss_pred hCCCceE---EEEEEccCCCCC---------ceeEEEEEE---CCCCcCCHHHHHHHHHhhccCCc-ccCC---cEEEEe
Confidence 9999875 899988775432 112222222 2332222 4555555543 332 4444 444555
Q ss_pred CCccCCCCcccchHHHHHHhhcC
Q 037878 1011 RTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1011 ~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
++||+|++|||+|++|+++..+.
T Consensus 485 ~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 485 ADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred ccCCCCCcceeeHHhHHHhccCC
Confidence 99999999999999998876443
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=547.94 Aligned_cols=487 Identities=23% Similarity=0.304 Sum_probs=378.4
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.++++++++.. |+++|+...+ +.+||+||.++++++|..|.+. |+++|++|+++++|++++++++
T Consensus 20 ~~~l~~~l~~~a~~~--p~~~a~~~~~------~~~Ty~el~~~v~~la~~L~~~---gi~~g~~V~v~~~n~~~~~~~~ 88 (542)
T PRK06155 20 ERTLPAMLARQAERY--PDRPLLVFGG------TRWTYAEAARAAAAAAHALAAA---GVKRGDRVALMCGNRIEFLDVF 88 (542)
T ss_pred ccCHHHHHHHHHHHC--CCCeEEEeCC------ccccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCChHHHHHH
Confidence 457889999999874 8899987532 4799999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCC--CCC-ccccccccc-----c--
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWP--NLP-WLHTDSWVK-----N-- 617 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~--~~~-~~~~~~~~~-----~-- 617 (2280)
|||+++|++++|+++..+.++ +..+++++++++++++.+....+...... ... .+..+.... .
T Consensus 89 lA~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (542)
T PRK06155 89 LGCAWLGAIAVPINTALRGPQ-------LEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWS 161 (542)
T ss_pred HHHHHhCCEEEEeccccCHHH-------HHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccc
Confidence 999999999999999999888 88999999999999987654432211100 000 000010000 0
Q ss_pred ccccc-cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHH
Q 037878 618 SKNLL-AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLF 696 (2280)
Q Consensus 618 ~~~~~-~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~ 696 (2280)
..... ...........++++++|+|||||||.||||+++|+++..........+++.+++++++++|++|..++. .++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~-~~~ 240 (542)
T PRK06155 162 TAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFF 240 (542)
T ss_pred hhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHH-HHH
Confidence 00000 0000112234678999999999999999999999999988887777888999999999999999999985 578
Q ss_pred HHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHH
Q 037878 697 TAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTV 776 (2280)
Q Consensus 697 ~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~ 776 (2280)
.++..|+++++.+. .++..+++.++++++|++..+|+++..+.+..... ..+.+++|.++.|| +++++.
T Consensus 241 ~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~~~~g~--~~~~~~ 309 (542)
T PRK06155 241 QALLAGATYVLEPR----FSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE-----SDRAHRVRVALGPG--VPAALH 309 (542)
T ss_pred HHHHcCceEEeeCC----CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-----ccccCceEEEEEcC--CCHHHH
Confidence 99999999888653 27999999999999999999999888776543221 23467899887665 578888
Q ss_pred HHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCee
Q 037878 777 KRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEG 856 (2280)
Q Consensus 777 ~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~G 856 (2280)
+++.+.+ ++.++|.||+||++.+++.... ....+++|.|.++++++|+|+++ ..+|.|+.|
T Consensus 310 ~~~~~~~------~~~v~~~YG~tE~~~~~~~~~~-----------~~~~~~vG~~~~~~~~~i~d~~~--~~~~~g~~G 370 (542)
T PRK06155 310 AAFRERF------GVDLLDGYGSTETNFVIAVTHG-----------SQRPGSMGRLAPGFEARVVDEHD--QELPDGEPG 370 (542)
T ss_pred HHHHHHc------CCCEEeeecccccCccccCCCC-----------CCCCCCcCccCCCceEEEECCCC--CCCCCCCce
Confidence 8888764 4679999999999876543211 11236789999999999999774 345799999
Q ss_pred EEEEcCC---CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHH
Q 037878 857 EVWISSP---SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTV 932 (2280)
Q Consensus 857 EL~i~Gp---~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L 932 (2280)
||+++|+ +++.||+++++.|.+.|. ++||+|||+|+++ ||.++|+||+||+||++|++|+|.|||++|
T Consensus 371 ei~v~~~~~~~~~~GY~~~~~~~~~~~~--------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l 442 (542)
T PRK06155 371 ELLLRADEPFAFATGYFGMPEKTVEAWR--------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL 442 (542)
T ss_pred EEEEecCCccccchhhcCCHHHHHHhhc--------CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHH
Confidence 9999998 699999999999998874 3899999999997 999999999999999999999999999999
Q ss_pred HhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcceeEEEEecCC
Q 037878 933 ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTVASVKLIKPR 1011 (2280)
Q Consensus 933 ~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~lv~~~ 1011 (2280)
.++|+|.+ |+|++++++..+ .....++. ...+... ..++++.+++++.. +++| ..+..++
T Consensus 443 ~~~~~V~~---~~v~~v~~~~~~----------~~~~~~v~--~~~~~~~~~~~~~~~~~~~l~~-~~~P---~~i~~~~ 503 (542)
T PRK06155 443 LSHPAVAA---AAVFPVPSELGE----------DEVMAAVV--LRDGTALEPVALVRHCEPRLAY-FAVP---RYVEFVA 503 (542)
T ss_pred HhCCCeeE---EEEEeecccccC----------ceEEEEEE--ECCCCCCCHHHHHHHHHhhCcC-ccCC---cEEEEec
Confidence 99999975 888887765322 22222222 2222222 24566677766653 4444 4455569
Q ss_pred CccCCCCcccchHHHHHHh
Q 037878 1012 TMSKTTSGKIKRFECLKQF 1030 (2280)
Q Consensus 1012 ~lP~t~sGKvdR~~L~~~~ 1030 (2280)
+||+|++||++|++|++++
T Consensus 504 ~iP~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 504 ALPKTENGKVQKFVLREQG 522 (542)
T ss_pred cCCCCcccceeHHHHHhhc
Confidence 9999999999999998875
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=555.34 Aligned_cols=495 Identities=25% Similarity=0.370 Sum_probs=379.9
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.++++..+++ .|+++|+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+++++++++
T Consensus 32 ~~l~~~~~~~~~~--~p~~~a~~~~~------~~~Ty~ql~~~~~~~A~~L~~~---gi~~gd~V~l~~~n~~~~~~~~l 100 (573)
T PRK05605 32 TTLVDLYDNAVAR--FGDRPALDFFG------ATTTYAELGKQVRRAAAGLRAL---GVRPGDRVAIVLPNCPQHIVAFY 100 (573)
T ss_pred CCHHHHHHHHHHH--CCCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCHHHHHHHH
Confidence 4789999888876 48999987632 4799999999999999999988 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCC-ccccc--------------
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLP-WLHTD-------------- 612 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~-~~~~~-------------- 612 (2280)
||+++|++++|+++..+.++ +.+++++++++.++++........... ..... .+..+
T Consensus 101 A~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 173 (573)
T PRK05605 101 AVLRLGAVVVEHNPLYTAHE-------LEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALR 173 (573)
T ss_pred HHHhcCcEEeecCcCCCHHH-------HHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccc
Confidence 99999999999999999888 889999999999998665322111000 00000 00000
Q ss_pred ---------------------cccccccccccc--cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH
Q 037878 613 ---------------------SWVKNSKNLLAE--NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK 669 (2280)
Q Consensus 613 ---------------------~~~~~~~~~~~~--~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~ 669 (2280)
.+.......... .........++++++|+|||||||.||+|++||+++...+.....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~ 253 (573)
T PRK05605 174 LPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKA 253 (573)
T ss_pred cccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence 000000000000 001122345789999999999999999999999999887765544
Q ss_pred HcC--CCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHh
Q 037878 670 RYK--STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLE 747 (2280)
Q Consensus 670 ~~~--~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~ 747 (2280)
.+. ...++++++.+|++|.+++...++.++..|+++++.++ .++..+++.++++++|++.++|.+++.+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 329 (573)
T PRK05605 254 WVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA----PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAE 329 (573)
T ss_pred hccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcc
Confidence 332 23578999999999999988788888999999988753 378999999999999999999999988876433
Q ss_pred cccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeec
Q 037878 748 SSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCG 827 (2280)
Q Consensus 748 ~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g 827 (2280)
.. ..+++++|.+++||+++++++.++|.+.+ +..+++.||+||++.+++...... ....+
T Consensus 330 ~~-----~~~~~~lr~i~~gg~~l~~~~~~~~~~~~------~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~ 389 (573)
T PRK05605 330 ER-----GVDLSGVRNAFSGAMALPVSTVELWEKLT------GGLLVEGYGLTETSPIIVGNPMSD---------DRRPG 389 (573)
T ss_pred cc-----CCCchhccEEEECCCcCCHHHHHHHHHHh------CCCeecccccchhchhhhcCCccc---------CCcCC
Confidence 22 24578999999999999999999998764 467999999999987665432110 11246
Q ss_pred cccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeE
Q 037878 828 YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKF 906 (2280)
Q Consensus 828 ~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l 906 (2280)
++|.|+|++.++|+|+++....++.|+.|||+++|+.++.||+++++.|++.|.. +||+|||+++++ +|.+
T Consensus 390 ~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~TGD~~~~~~~g~l 461 (573)
T PRK05605 390 YVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLD--------GWFRTGDVVVMEEDGFI 461 (573)
T ss_pred ccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccC--------CCcccCCEEEEcCCCcE
Confidence 7899999999999998763345578999999999999999999999999988752 599999999996 9999
Q ss_pred EEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHH
Q 037878 907 FITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKD 985 (2280)
Q Consensus 907 ~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~ 985 (2280)
+++||+||+||++|+||+|.|||+++.+++.|.+ ++|++.+++..+ +...++ ++..++.. ...+
T Consensus 462 ~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~---~~v~~~~~~~~~----------~~~~~~--vv~~~~~~~~~~~ 526 (573)
T PRK05605 462 RIVDRIKELIITGGFNVYPAEVEEVLREHPGVED---AAVVGLPREDGS----------EEVVAA--VVLEPGAALDPEG 526 (573)
T ss_pred EEEeccccceeeCCEEECHHHHHHHHHhCcccce---EEEEeeecccCC----------eEEEEE--EEECCCCCCCHHH
Confidence 9999999999999999999999999999999875 888887664321 222222 22233322 2245
Q ss_pred HHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 986 VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 986 l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+.+.+++++.. +++ |..++.+++||+|.+||++|++|++++.+
T Consensus 527 l~~~~~~~l~~-~~~---p~~i~~~~~iP~t~~GKi~r~~L~~~~~~ 569 (573)
T PRK05605 527 LRAYCREHLTR-YKV---PRRFYHVDELPRDQLGKVRRREVREELLE 569 (573)
T ss_pred HHHHHHHhCcc-ccC---CcEEEEeccCCCCCcccccHHHHHHHHHH
Confidence 55666655553 343 44455568999999999999999988754
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=560.52 Aligned_cols=499 Identities=17% Similarity=0.185 Sum_probs=372.5
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.+.+++.+ +|+++|+++.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+.++++++
T Consensus 36 ~~tl~~~l~~~a~~--~p~~~Ai~~~~------~~~Ty~eL~~~~~~la~~L~~~---g~~~gd~V~i~~~n~~~~v~~~ 104 (600)
T PRK08279 36 KRSLGDVFEEAAAR--HPDRPALLFED------QSISYAELNARANRYAHWAAAR---GVGKGDVVALLMENRPEYLAAW 104 (600)
T ss_pred cccHHHHHHHHHHh--CCCCcEEEeCC------CcccHHHHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCHHHHHHH
Confidence 45789999988876 48999998632 5799999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC--CCCCCccccc------------c
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS--WPNLPWLHTD------------S 613 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~------------~ 613 (2280)
|||+++|++++|+++..+.++ +.++++++++++++++.+....+.... ......+... +
T Consensus 105 lA~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (600)
T PRK08279 105 LGLAKLGAVVALLNTQQRGAV-------LAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYED 177 (600)
T ss_pred HHHHhcCcEEeecCCCCCHHH-------HHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHH
Confidence 999999999999999999887 889999999999999876543322110 0000000000 0
Q ss_pred ccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH
Q 037878 614 WVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
+...................++++++|+|||||||.||||++||+++.+++.+....+++.++|++++++|++|.++++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~ 257 (600)
T PRK08279 178 LAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTV 257 (600)
T ss_pred HhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHH
Confidence 00000000000011122345789999999999999999999999999999999888899999999999999999999988
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
.++.++..|+++++.++ + ++..+++.+.++++|++..+|++++.+....... .....++|. ++|+++++
T Consensus 258 ~~~~~l~~G~~~v~~~~--~--~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~-----~~~~~~l~~--~~g~~l~~ 326 (600)
T PRK08279 258 AWSSVLAAGATLALRRK--F--SASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP-----TDRDHRLRL--MIGNGLRP 326 (600)
T ss_pred HHHHHHhcCcEEEEcCC--C--CHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc-----cccCcceeE--EecCCCCH
Confidence 88888999998888653 2 7889999999999999999999988876532211 123456775 35788999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCC----C---------ceEEE
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDP----D---------VDIRI 840 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~p----g---------~~v~I 840 (2280)
++.++|.+.+ +...++|.||+||++..++... .. .+++|.+.+ + ....|
T Consensus 327 ~~~~~~~~~~-----~~~~l~~~YG~tE~~~~~~~~~--~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~i 388 (600)
T PRK08279 327 DIWDEFQQRF-----GIPRILEFYAASEGNVGFINVF--NF-----------DGTVGRVPLWLAHPYAIVKYDVDTGEPV 388 (600)
T ss_pred HHHHHHHHHh-----CcceeeeeecccccceeecccC--CC-----------CcccccccccccccceeeeeccCcCcee
Confidence 9999999875 2346999999999886433211 11 123333333 2 23334
Q ss_pred EcCCCCcccCCCCCeeEEE--EcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEE
Q 037878 841 VNPETSEEIGEPGKEGEVW--ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLII 917 (2280)
Q Consensus 841 vd~~~~~~~~p~G~~GEL~--i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IK 917 (2280)
.|.++....++.|+.|||+ |+|++++.|| ++++.|+++|..+.. ..+++||+|||+|+++ ||.++|+||+||+||
T Consensus 389 ~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~-~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik 466 (600)
T PRK08279 389 RDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVF-KKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFR 466 (600)
T ss_pred eCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhccc-CCCCceEeecceEEEcCCccEEEecccCCeEE
Confidence 4444433445789999998 7899999999 899999999875432 2356899999999997 999999999999999
Q ss_pred ECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh
Q 037878 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEE 997 (2280)
Q Consensus 918 i~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~ 997 (2280)
++|+||+|.|||++|.++|+|.+ |+|++++++... +...++++++.+ ......+++.+.++++|+.
T Consensus 467 ~~G~~i~p~eIE~~l~~~p~V~~---a~v~gv~~~~~~--------~~~~~~~vv~~~--~~~~~~~~l~~~l~~~L~~- 532 (600)
T PRK08279 467 WKGENVATTEVENALSGFPGVEE---AVVYGVEVPGTD--------GRAGMAAIVLAD--GAEFDLAALAAHLYERLPA- 532 (600)
T ss_pred ECCcccCHHHHHHHHhcCCCcce---EEEEEeecCCCC--------CccceeEEEecC--CccCCHHHHHHHHHhhCcc-
Confidence 99999999999999999999875 888887654211 122233333321 1122235666666666654
Q ss_pred cCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 998 HGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 998 ~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+++| ..++.+++||+|.|||+||++|+++..+
T Consensus 533 ~~~P---~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 564 (600)
T PRK08279 533 YAVP---LFVRLVPELETTGTFKYRKVDLRKEGFD 564 (600)
T ss_pred ccCC---eEEEeecCCCCCcchhhhHHHHhhcCCC
Confidence 4444 4455569999999999999999887543
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-51 Score=551.90 Aligned_cols=500 Identities=20% Similarity=0.311 Sum_probs=385.4
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++.+++. |+++|+.+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+++++++++
T Consensus 18 ~~l~~~l~~~~~~~--p~~~a~~~~~~~----~~~Ty~~l~~~~~~~a~~L~~~---gi~~g~~V~i~~~~~~~~~~~~~ 88 (558)
T PRK12583 18 QTIGDAFDATVARF--PDREALVVRHQA----LRYTWRQLADAVDRLARGLLAL---GVQPGDRVGIWAPNCAEWLLTQF 88 (558)
T ss_pred CcHHHHHHHHHHHC--CCCeEEEecCCC----cEecHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCChHHHHHHH
Confidence 47899999888774 899998765432 5799999999999999999988 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh-----hc----c-----------CCCCCCCc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA-----VR----V-----------GSWPNLPW 608 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~-----~~----~-----------~~~~~~~~ 608 (2280)
||+++|++++|+++..+.++ +..+++++++++++++...... +. . ...+....
T Consensus 89 a~~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
T PRK12583 89 ATARIGAILVNINPAYRASE-------LEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161 (558)
T ss_pred HHHhhCCEEEecCCCCCHHH-------HHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceE
Confidence 99999999999999998888 8899999999999987543210 00 0 00000000
Q ss_pred -ccccc--------ccccc--cccc-c-ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCC
Q 037878 609 -LHTDS--------WVKNS--KNLL-A-ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTS 675 (2280)
Q Consensus 609 -~~~~~--------~~~~~--~~~~-~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~ 675 (2280)
+.... +.... .... . ..........++++++++|||||||.||||.++|+++.+.+......+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 241 (558)
T PRK12583 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE 241 (558)
T ss_pred EEEecCCCCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC
Confidence 00000 00000 0000 0 0000112345789999999999999999999999999998888888889999
Q ss_pred CcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccc
Q 037878 676 KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRS 755 (2280)
Q Consensus 676 ~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~ 755 (2280)
+|+++..+|++|.++.+..++.++..|+++++... . .++..+++.++++++|++.++|.++..++..... ..
T Consensus 242 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~-~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-----~~ 313 (558)
T PRK12583 242 HDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNE-A--FDPLATLQAVEEERCTALYGVPTMFIAELDHPQR-----GN 313 (558)
T ss_pred CCeEEEecCchhhhhHHHHHHHHHhcCceEEeecC-C--CCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc-----cC
Confidence 99999999999999998899999999998886543 2 3889999999999999999999988766543221 12
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCC
Q 037878 756 FDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD 835 (2280)
Q Consensus 756 ~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg 835 (2280)
.+++++|.+++||+++++++.+++.+.+ +...+++.||+||++.+++...... .. ....+++|+|+|+
T Consensus 314 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~-----~~~~i~~~YG~tE~~~~~~~~~~~~-~~------~~~~~~vG~p~~~ 381 (558)
T PRK12583 314 FDLSSLRTGIMAGAPCPIEVMRRVMDEM-----HMAEVQIAYGMTETSPVSLQTTAAD-DL------ERRVETVGRTQPH 381 (558)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHHc-----CCcceeccccccccccceeccCccc-cc------ccccCCCCccCCC
Confidence 5678999999999999999999998875 3457999999999997765432211 10 1224678999999
Q ss_pred ceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCC
Q 037878 836 VDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKD 914 (2280)
Q Consensus 836 ~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd 914 (2280)
+.++|+|+++ ..++.|+.|||+|+|+.++.||+|+++.+.+.|.. ++||+|||+++++ ||.+++.||+||
T Consensus 382 ~~~~i~d~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-------~~~~~TGDl~~~~~dg~l~i~GR~~~ 452 (558)
T PRK12583 382 LEVKVVDPDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDE-------DGWMHTGDLATMDEQGYVRIVGRSKD 452 (558)
T ss_pred CeEEEECCCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCC-------CCCeeccceEEECCCccEEEEecccc
Confidence 9999999884 44579999999999999999999999998887742 4899999999996 999999999999
Q ss_pred eEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHH
Q 037878 915 LIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTR 993 (2280)
Q Consensus 915 ~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~ 993 (2280)
+||++|++|+|.|||++|.++++|.+ ++|++++++..+ .... ++++..++. ....++.+.++++
T Consensus 453 ~i~~~G~~v~~~~IE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~--~~v~~~~~~~~~~~~i~~~~~~~ 517 (558)
T PRK12583 453 MIIRGGENIYPREIEEFLFTHPAVAD---VQVFGVPDEKYG----------EEIV--AWVRLHPGHAASEEELREFCKAR 517 (558)
T ss_pred eeEECCEEeCHHHHHHHHHhCCCeeE---EEEEeeecCCCC----------cEEE--EEEEECCCCCCCHHHHHHHHHhh
Confidence 99999999999999999999999865 888887765321 1222 222222222 2234566666666
Q ss_pred HHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 994 VVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 994 l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
|+. +++ |..++.+++||+|.+||++|++|++++.+
T Consensus 518 L~~-~~~---P~~i~~v~~lP~t~sGK~~r~~L~~~~~~ 552 (558)
T PRK12583 518 IAH-FKV---PRYFRFVDEFPMTVTGKVQKFRMREISIE 552 (558)
T ss_pred ccc-CcC---CcEEEEeccCCCCCCCCccHHHHHHHHHh
Confidence 654 343 44455569999999999999999988654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=548.59 Aligned_cols=504 Identities=21% Similarity=0.343 Sum_probs=380.3
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.++++..+++ +|+++|+.+.+ +++||+||.++++++|+.|++. |+++||+|+++++|++++++++
T Consensus 6 ~~~~~~~~~~~a~~--~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~---g~~~g~~v~i~~~~~~~~~~~~ 74 (528)
T PRK07470 6 VMNLAHFLRQAARR--FPDRIALVWGD------RSWTWREIDARVDALAAALAAR---GVRKGDRILVHSRNCNQMFESM 74 (528)
T ss_pred CCCHHHHHHHHHHH--CCCceEEEECC------ccccHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCCHHHHHHH
Confidence 45688889888876 48999987532 5799999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-ccccccc--cccccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTDSW--VKNSKNLL 622 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~~~--~~~~~~~~ 622 (2280)
+||+++|++++|+++..+.++ +..++++++++.++++.+........ ..+... .+..... ........
T Consensus 75 lA~~~~G~~~v~l~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (528)
T PRK07470 75 FAAFRLGAVWVPTNFRQTPDE-------VAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALV 147 (528)
T ss_pred HHHHhCCeEEEecCccCCHHH-------HHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHH
Confidence 999999999999999999888 88999999999999987643222100 000000 0000000 00000000
Q ss_pred c---ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH-c-CCCCCcEEEEEcCchhhhhHHHHHHH
Q 037878 623 A---ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-Y-KSTSKTVLVSWLPQYHDMGLIGGLFT 697 (2280)
Q Consensus 623 ~---~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~-~-~~~~~d~~l~~~pl~h~~gl~~~i~~ 697 (2280)
. ..........++++++|+|||||||.||||+++|+++...+...... + +...+|+.+.++|++|++++. .++
T Consensus 148 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~- 225 (528)
T PRK07470 148 ARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC- 225 (528)
T ss_pred hcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-
Confidence 0 00111233567899999999999999999999999987655443222 2 467889999999999999974 344
Q ss_pred HHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHH
Q 037878 698 AMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVK 777 (2280)
Q Consensus 698 ~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~ 777 (2280)
.++.|+++++.+...+ ++..+++.++++++|++.++|++++.+.+.... ...+++++|.+++||+++++++.+
T Consensus 226 ~~~~g~~~~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~lr~~~~gG~~l~~~~~~ 298 (528)
T PRK07470 226 QVARGAATVLLPSERF--DPAEVWALVERHRVTNLFTVPTILKMLVEHPAV-----DRYDHSSLRYVIYAGAPMYRADQK 298 (528)
T ss_pred HHhcCceEEEecccCc--CHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-----CCCCCcceEEEEEcCCCCCHHHHH
Confidence 5677777777655444 889999999999999999999999888654321 125678999999999999999999
Q ss_pred HHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeE
Q 037878 778 RFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857 (2280)
Q Consensus 778 ~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GE 857 (2280)
++.+.+ +..+++.||+||++..++......... +.......+++|.|+++++++|+|+++ ..++.|+.||
T Consensus 299 ~~~~~~------g~~~~~~YG~TE~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~~g~~~~i~d~~~--~~~~~g~~Ge 368 (528)
T PRK07470 299 RALAKL------GKVLVQYFGLGEVTGNITVLPPALHDA--EDGPDARIGTCGFERTGMEVQIQDDEG--RELPPGETGE 368 (528)
T ss_pred HHHHHh------CcHHHHhCCCcccCCceeecchhhccc--cccccceeeccCcccCCcEEEEECCCC--CCCCCCCceE
Confidence 887764 356999999999987655322110000 000123457899999999999999875 3457999999
Q ss_pred EEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhcc
Q 037878 858 VWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESST 936 (2280)
Q Consensus 858 L~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p 936 (2280)
|+|+|+.++.||+++|+.+++.|. ++||+|||+++++ ||.++++||+||+||++|+||+|.|||++|.+++
T Consensus 369 l~i~~~~~~~gy~~~~~~~~~~~~--------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~ 440 (528)
T PRK07470 369 ICVIGPAVFAGYYNNPEANAKAFR--------DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHP 440 (528)
T ss_pred EEEeCCccchhhcCCHHHHHhhhc--------CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCC
Confidence 999999999999999999998874 3899999999997 9999999999999999999999999999999999
Q ss_pred CCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccC
Q 037878 937 EHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSK 1015 (2280)
Q Consensus 937 ~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~ 1015 (2280)
.|.+ |+|++.+++..+ ....++++ ..++. ....++.+.+++.|+. +++|. .++.+++||+
T Consensus 441 ~v~~---~~v~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~-~~~P~---~~~~~~~iP~ 501 (528)
T PRK07470 441 AVSE---VAVLGVPDPVWG----------EVGVAVCV--ARDGAPVDEAELLAWLDGKVAR-YKLPK---RFFFWDALPK 501 (528)
T ss_pred CceE---EEEEeccCcccC----------ceeEEEEE--ECCCCCCCHHHHHHHHHHhhhc-CCCCc---EEEEeccCCC
Confidence 8865 888888775432 11222222 22232 2335677777777754 55554 3445589999
Q ss_pred CCCcccchHHHHHHhhcCCC
Q 037878 1016 TTSGKIKRFECLKQFVDGTL 1035 (2280)
Q Consensus 1016 t~sGKvdR~~L~~~~~~~~~ 1035 (2280)
|++||++|++|++++.+.-+
T Consensus 502 t~~GKi~r~~l~~~~~~~~~ 521 (528)
T PRK07470 502 SGYGKITKKMVREELEERGL 521 (528)
T ss_pred CCcccccHHHHHHHHHhccc
Confidence 99999999999998766543
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=548.24 Aligned_cols=489 Identities=21% Similarity=0.276 Sum_probs=375.9
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++++++ +|+++|+...+ +++||+||.++++++|..|.+. |+++||+|+++++|+.++++++
T Consensus 22 ~~~l~~~~~~~a~~--~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~---g~~~g~~V~i~~~~~~~~~~~~ 90 (527)
T TIGR02275 22 DKPLTDILRDQAAR--YPDAIAIICGN------RQWSYRELDQRADNLAAGLTKL---GIGQGDTAVVQLPNIAEFYIVF 90 (527)
T ss_pred CCcHHHHHHHHHHH--CCCceEEEeCC------ceecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCcHHHHHHH
Confidence 34688899888876 48999986421 5899999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh-----hc--cCCCCCCCcccccc-c--ccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA-----VR--VGSWPNLPWLHTDS-W--VKN 617 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~-----~~--~~~~~~~~~~~~~~-~--~~~ 617 (2280)
|||+++|++++++++..+.++ +.+++++++++.++++...... .. ....+....+.... . ...
T Consensus 91 la~~~~G~~~v~~~~~~~~~~-------~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (527)
T TIGR02275 91 FALLKLGIAPVLALFSHRKSE-------LTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAE 163 (527)
T ss_pred HHHHHcCeEEeccccccCHHH-------HHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcch
Confidence 999999999999999888777 8899999999999987543210 00 00011111000000 0 000
Q ss_pred ccc--cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH-H
Q 037878 618 SKN--LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG-G 694 (2280)
Q Consensus 618 ~~~--~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~ 694 (2280)
... .............++|+|+|+|||||||.||||++||+++...+......+.++.++++++++|++|.+++.. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~ 243 (527)
T TIGR02275 164 LFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPG 243 (527)
T ss_pred hhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHH
Confidence 000 0000111123456789999999999999999999999999999888888888999999999999999998765 5
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHH
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQT 774 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~ 774 (2280)
++.++..|+++++.++ .+|..+++.++++++|++..+|.++..+.+..... ..+++++|.+++||++++++
T Consensus 244 ~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~lr~~~~gG~~l~~~ 314 (527)
T TIGR02275 244 ALGVFYAGGCVVLAPD----PSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS-----RYDLSSLKLLQVGGAKFSEA 314 (527)
T ss_pred HHHHHhcCCeEEECCC----CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc-----CCCccceEEEEEcCCCCCHH
Confidence 7888999999887543 27899999999999999999999998877654322 24678999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCC-CCceEEEEcCCCCcccCCCC
Q 037878 775 TVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQND-PDVDIRIVNPETSEEIGEPG 853 (2280)
Q Consensus 775 l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~-pg~~v~Ivd~~~~~~~~p~G 853 (2280)
+.+++.+.+ +..+++.||+||+++..+.. .. + .....+++|+|+ ++.+++|+|+++ ..++.|
T Consensus 315 ~~~~~~~~~------g~~~~~~YG~tE~~~~~~~~-~~--~------~~~~~~~~G~~~~~~~~v~i~d~~g--~~~~~g 377 (527)
T TIGR02275 315 AARRVPAVF------GCQLQQVFGMAEGLVNYTRL-DD--P------AEIIFTTQGRPMSPDDEVRVVDDHG--NPVAPG 377 (527)
T ss_pred HHHHHHHHh------CCeEEeeeccCccCccccCC-CC--c------cccccccCCCCCCCCceEEEECCCC--CCCCCC
Confidence 999998864 46799999999976433221 11 0 112346789999 589999999775 345799
Q ss_pred CeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHH
Q 037878 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTV 932 (2280)
Q Consensus 854 ~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L 932 (2280)
+.|||+++|+.++.||+++|+.|++.|.. ++||+|||+++++ ||.++++||.||+||++|++|+|.|||++|
T Consensus 378 ~~Gei~v~g~~~~~gY~~~~~~~~~~~~~-------dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l 450 (527)
T TIGR02275 378 ETGMLLTRGPYTFRGYYKAPEHNAAAFDA-------EGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLL 450 (527)
T ss_pred CceEEEecCCccchhhcCChhHhHhhcCc-------CCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHH
Confidence 99999999999999999999999988854 4899999999996 999999999999999999999999999999
Q ss_pred HhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhcCcceeEEEEecCC
Q 037878 933 ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTR-VVEEHGVTVASVKLIKPR 1011 (2280)
Q Consensus 933 ~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~~~~~lv~~~ 1011 (2280)
.++|+|.+ ++|++.+++..+ +...++++ ..++.....++.+.++++ ++. ++.| ..+..++
T Consensus 451 ~~~~~v~~---~~v~~~~~~~~~----------~~~~a~vv--~~~~~~~~~~l~~~l~~~~l~~-~~~P---~~i~~v~ 511 (527)
T TIGR02275 451 LAHPAVHD---AALVSMPDELLG----------EKSCAFIV--VRDPALKAAQLRRFLRERGLAE-YKLP---DRVEFID 511 (527)
T ss_pred HhCCCceE---EEEEecCCcccc----------cEEEEEEE--ECCCCCCHHHHHHHHHhCCCcc-ccCC---CEEEEec
Confidence 99999975 888988765332 22223332 223323334555555553 332 4444 4455558
Q ss_pred CccCCCCcccchHHH
Q 037878 1012 TMSKTTSGKIKRFEC 1026 (2280)
Q Consensus 1012 ~lP~t~sGKvdR~~L 1026 (2280)
+||+|++||++|++|
T Consensus 512 ~iP~t~sGKv~r~~L 526 (527)
T TIGR02275 512 SLPLTAVGKIDKKAL 526 (527)
T ss_pred cCCCCCccceeHHhc
Confidence 999999999999875
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-51 Score=545.56 Aligned_cols=493 Identities=24% Similarity=0.329 Sum_probs=383.7
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.|+..+.. .|+++|+.+.+ +++||+||.+++.++|+.|.+. |+++||+|+++++|++++++++
T Consensus 4 ~~~i~~~l~~~~~~--~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~---gv~~g~~V~l~~~~~~~~~~~~ 72 (513)
T PRK07656 4 WMTLPELLARAARR--FGDKEAYVFGD------QRLTYAELNARVRRAAAALAAL---GIGKGDRVAIWAPNSPHWVIAA 72 (513)
T ss_pred cccHHHHHHHHHHH--CCCCeEEEeCC------CceeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCChHHHHHH
Confidence 35788888888876 48999987632 5799999999999999999988 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCcccc-c--cccc------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLHT-D--SWVK------ 616 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~~-~--~~~~------ 616 (2280)
+||+++|++++|+++..+.++ +..+++++++++++++.......... ..+....+.. . ....
T Consensus 73 la~~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (513)
T PRK07656 73 LGALKAGAVVVPLNTRYTADE-------AAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMK 145 (513)
T ss_pred HHHHhcCeEEEecCcccCHHH-------HHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccc
Confidence 999999999999999998877 78999999999999976543322110 0111110000 0 0000
Q ss_pred cccccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHH
Q 037878 617 NSKNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 617 ~~~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
...... ...........++++++|+|||||||.||+|.++|+++.+.+......++..+++++++++|++|++++...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (513)
T PRK07656 146 TFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAG 225 (513)
T ss_pred cHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHH
Confidence 000000 000112334577899999999999999999999999999999888888899999999999999999999888
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHH
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQT 774 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~ 774 (2280)
++.++..|+++++.+. .++..+++.++++++|++.++|.++..+.+..... ..+++++|.+++||++++++
T Consensus 226 ~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~v~~~g~~~~~~ 296 (513)
T PRK07656 226 VNAPLMRGATILPLPV----FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS-----AEDLSSLRLAVTGAASMPVA 296 (513)
T ss_pred HHHHHHcCceEEecCc----CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC-----CCCccceeeEEecCCCCCHH
Confidence 9999999999887542 38999999999999999999999998887653322 24678999999999999999
Q ss_pred HHHHHHHHhcCCCCCCc-ccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCC
Q 037878 775 TVKRFVELTRPFGLSQG-VMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853 (2280)
Q Consensus 775 l~~~~~~~~~~~g~~~~-~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G 853 (2280)
+.++|.+.+ +. .++|.||+||++.+++........ ....+++|.|+++++++|+|+++ ..++.|
T Consensus 297 ~~~~~~~~~------~~~~~~~~YG~tE~~~~~~~~~~~~~~-------~~~~~~vG~~~~~~~~~i~d~~~--~~~~~g 361 (513)
T PRK07656 297 LLERFESEL------GVDIVLTGYGLSEASGVTTFNRLDDDR-------KTVAGTIGTAIAGVENKIVNELG--EEVPVG 361 (513)
T ss_pred HHHHHHHHc------CCCceEeEEccccCCCceeecCccccc-------cccCCCccccCCCcEEEEECCCC--CCCCCC
Confidence 999998874 34 799999999998766543321110 11146789999999999999774 445799
Q ss_pred CeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHH
Q 037878 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTV 932 (2280)
Q Consensus 854 ~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L 932 (2280)
+.|||+++|+.++.||+++++.+...|.. ++||+|||+|+++ ||.++++||+||+||++|+||+|.|||++|
T Consensus 362 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l 434 (513)
T PRK07656 362 EVGELLVRGPNVMKGYYDDPEATAAAIDA-------DGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVL 434 (513)
T ss_pred CceEEEEEcchhhhhhcCCHHHHhhhhcc-------CCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHH
Confidence 99999999999999999999998877742 4899999999996 999999999999999999999999999999
Q ss_pred HhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCC
Q 037878 933 ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011 (2280)
Q Consensus 933 ~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~ 1011 (2280)
.+++++.+ ++|++.+++..+ ....+++. ..++. ....++.+.++++++. +++| ..++.++
T Consensus 435 ~~~~~i~~---~~v~~~~~~~~g----------~~~~~~v~--~~~~~~~~~~~l~~~~~~~l~~-~~~p---~~i~~v~ 495 (513)
T PRK07656 435 YEHPAVAE---AAVIGVPDERLG----------EVGKAYVV--LKPGAELTEEELIAYCREHLAK-YKVP---RSIEFLD 495 (513)
T ss_pred HhCCCeeE---EEEEecCCcccC----------ceEEEEEE--ECCCCCCCHHHHHHHHHhhccc-ccCC---CEEEEec
Confidence 99999865 788887664322 12222222 22222 2224566666666654 3433 4455568
Q ss_pred CccCCCCcccchHHHHH
Q 037878 1012 TMSKTTSGKIKRFECLK 1028 (2280)
Q Consensus 1012 ~lP~t~sGKvdR~~L~~ 1028 (2280)
+||+|++||++|++|++
T Consensus 496 ~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 496 ELPKNATGKVLKRALRE 512 (513)
T ss_pred CCCCCCccceeHHHHhc
Confidence 99999999999998754
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=551.32 Aligned_cols=519 Identities=18% Similarity=0.229 Sum_probs=383.5
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLT-SRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~-~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
.++.+++++++... |++.|+.+.++. .+.+||+||.++++++|++|++ . |+++||+|+++++|+.++++++
T Consensus 10 ~~~~~~l~~~a~~~--~~~~a~~~~~~~---~~~~Ty~el~~~~~~la~~L~~~~---g~~~gd~V~~~~~n~~e~~~~~ 81 (576)
T PRK05620 10 LSLTRILEYGSTVH--GDTTVTTWGGAE---QEQTTFAAIGARAAALAHALHDEL---GITGDQRVGSMMYNCAEHLEVL 81 (576)
T ss_pred CcHHHHHHHHHHhC--CCceEEEEcCCc---eEEEeHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeCCCHHHHHHH
Confidence 47889999998764 889998864322 3689999999999999999986 6 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCcc-cccc-cccc------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWL-HTDS-WVKN------ 617 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~-~~~~-~~~~------ 617 (2280)
+||+++|++++|+++..+.++ +.++++.++++.++++......+... ..+....+ ..+. ....
T Consensus 82 lA~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 154 (576)
T PRK05620 82 FAVACMGAVFNPLNKQLMNDQ-------IVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMP 154 (576)
T ss_pred HHHHhcCCEEeecccccCHHH-------HHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccc
Confidence 999999999999999998877 88999999999999986544322110 00111100 0000 0000
Q ss_pred -------cccc--ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHH--HHHcCCCCCcEEEEEcCch
Q 037878 618 -------SKNL--LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM--RKRYKSTSKTVLVSWLPQY 686 (2280)
Q Consensus 618 -------~~~~--~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~ 686 (2280)
.... ............++++++++|||||||.||||+++|+++....... ...+++..++++++++|++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 234 (576)
T PRK05620 155 EGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIY 234 (576)
T ss_pred cccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChH
Confidence 0000 0000111233567899999999999999999999999986554432 3356788999999999999
Q ss_pred hhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEE
Q 037878 687 HDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMV 766 (2280)
Q Consensus 687 h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~ 766 (2280)
|++++. ..+.++..|+++++..+ .+ +|..+++.++++++|++..+|.++..++....... .+..++|.+++
T Consensus 235 h~~g~~-~~~~~l~~g~~~~~~~~-~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~l~~~~~ 305 (576)
T PRK05620 235 HVLSWG-VPLAAFMSGTPLVFPGP-DL--SAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-----PERMSLQEIYV 305 (576)
T ss_pred HhhhhH-HHHHHHhcCceEEecCC-CC--CHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-----cccCceeEEEE
Confidence 999974 56788889999887653 33 89999999999999999999999887765432221 23457999999
Q ss_pred ecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCC
Q 037878 767 AAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846 (2280)
Q Consensus 767 gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~ 846 (2280)
||+++++++.++|.+.+ ++++++.||+||++..++....... ..... ......++|++.++++++|+|+ +.
T Consensus 306 gG~~~~~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~~-~~~~~-~~~~~~~~G~~~~~~~~~i~~~-g~ 376 (576)
T PRK05620 306 GGSAVPPILIKAWEERY------GVDVVHVWGMTETSPVGTVARPPSG-VSGEA-RWAYRVSQGRFPASLEYRIVND-GQ 376 (576)
T ss_pred cCCCCCHHHHHHHHHHh------CCceeeeccccccccceeeeccCCc-ccccc-ccccccccCCcCCceeEEEecC-Cc
Confidence 99999999999998764 4679999999999876554321110 00000 0011236789999999999996 32
Q ss_pred cccCCCCCeeEEEEcCCCcccccCCCchhh----HHHHhhhccC-----CCCCceeecCcEEEEE-CCeEEEEecCCCeE
Q 037878 847 EEIGEPGKEGEVWISSPSAGIGYWGREELS----QITFRNELQN-----NRGRKYTRTGDLGRII-DGKFFITGRIKDLI 916 (2280)
Q Consensus 847 ~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t----~~~f~~~~~~-----~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~I 916 (2280)
....+.|+.|||+++|+.++.||+++|+.| +..|..+++. ...++||+|||+++++ ||.++|+||+||+|
T Consensus 377 ~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i 456 (576)
T PRK05620 377 VMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVI 456 (576)
T ss_pred cccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhh
Confidence 221235789999999999999999999988 6666543321 1235899999999996 99999999999999
Q ss_pred EECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC----CHHHHHHHHH
Q 037878 917 IVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV----DKDVIENIKT 992 (2280)
Q Consensus 917 Ki~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~----~~~l~~~l~~ 992 (2280)
|++|+||+|.|||++|.+||.|.+ |+|++.+++..++ ...++++. .++... ..++++.+++
T Consensus 457 ~~~G~~i~~~eIE~~l~~~p~v~~---~~vv~~~~~~~g~---------~~~a~v~~---~~~~~~~~~~~~~l~~~l~~ 521 (576)
T PRK05620 457 RSGGEWIYSAQLENYIMAAPEVVE---CAVIGYPDDKWGE---------RPLAVTVL---APGIEPTRETAERLRDQLRD 521 (576)
T ss_pred hcCCEEEcHHHHHHHHhcCCCceE---EEEEeccCCCcCc---------eeEEEEEe---cCCCCcccccHHHHHHHHHh
Confidence 999999999999999999999875 8899887764321 22223322 222211 2455555555
Q ss_pred HHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCCCCCCC
Q 037878 993 RVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVP 1039 (2280)
Q Consensus 993 ~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~~lp 1039 (2280)
+|+. .+.|..++.+++||+|.+||+||++|++++.++.+..++
T Consensus 522 ~L~~----~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~~~~~~~ 564 (576)
T PRK05620 522 RLPN----WMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADGDFEIIK 564 (576)
T ss_pred hCcc----ccCCeEEEEeccCCCCCcccCcHHHHHHHHhcCCccEEE
Confidence 5554 344455566699999999999999999999887665443
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=543.26 Aligned_cols=522 Identities=27% Similarity=0.408 Sum_probs=388.9
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
++.+.+..++... |+..++...+ + .+.+||.||+++++++|++|.+. |+++||+|+++++|+++++++++|
T Consensus 3 ~~~~~~~~~~~~~--~~~~~~~~~~--~--~~~~ty~el~~~v~~~a~~L~~~---g~~~gd~V~l~~~~~~~~~~~~la 73 (545)
T PRK07768 3 RFTEKMYANARTS--PRGMVTGEPD--A--PVRHTWGEVHERARRIAGGLAAA---GVGPGDAVAVLAGAPVEIAPTAQG 73 (545)
T ss_pred hHHHHHHHHhhCC--CcceEEecCC--C--ceEecHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCchHHHHHHHH
Confidence 4566666777663 6777764433 2 25799999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccccccccc
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCF 629 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (2280)
|+++|++++|+++..+.++....+.++..+++.++++.++++.................+..+++... .....
T Consensus 74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~ 146 (545)
T PRK07768 74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADLLAA-------DPIDP 146 (545)
T ss_pred HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceeehhhhccc-------CCCCc
Confidence 99999999999998888776666667788899999999998765433221111011112222222111 01112
Q ss_pred CCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCC-cEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK-TVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 630 ~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
....++++++|+|||||||+||||+++|+++...+......+++..+ |++++++|++|+++++..+..++..|+++++.
T Consensus 147 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 226 (545)
T PRK07768 147 VETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKV 226 (545)
T ss_pred CCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEe
Confidence 24567999999999999999999999999999988888788888776 89999999999999987788899999999988
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
.+..+..+|..+.+.+++++++++..+|..+..+......... ....+++++|.+++||+++++++.+++.+....+|.
T Consensus 227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~ 305 (545)
T PRK07768 227 TPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK-PGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGL 305 (545)
T ss_pred CHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-ccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCC
Confidence 7766666899999999999999998888888777654422211 112568899999999999999999999886555666
Q ss_pred CCcccccccCccccccceecccCCCCce--e-------------e-cCCCceeeccccCCCCCceEEEEcCCCCcccCCC
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPI--I-------------L-DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~--~-------------~-~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~ 852 (2280)
+...+++.||+||++..++......... . . ........+++|+|+++++++|+|+++ ..++.
T Consensus 306 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~--~~~~~ 383 (545)
T PRK07768 306 RPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG--QVLPP 383 (545)
T ss_pred CcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCC--CCCCC
Confidence 6667999999999987654432210000 0 0 000112346799999999999999765 34579
Q ss_pred CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 853 G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
|+.|||+++|+.+++||+++++..... ..++||+|||+++++ ||.++|+||+||+||++|++|+|.|||++
T Consensus 384 g~~Gel~v~~~~~~~gy~~~~~~~~~~--------~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~ 455 (545)
T PRK07768 384 RGVGVIELRGESVTPGYLTMDGFIPAQ--------DADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERA 455 (545)
T ss_pred CCEEEEEEccCcccccccCCCCCcccc--------cCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHH
Confidence 999999999999999999865433211 235799999999997 89999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC--CHHHHHHHHHHHHHhcCcceeEEEEec
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV--DKDVIENIKTRVVEEHGVTVASVKLIK 1009 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~lv~ 1009 (2280)
|.++|+|.+ ++|++++.+. ......++++++....... ..++.+.+++.+.+.+......+.++.
T Consensus 456 l~~~~~v~~---~~vv~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~ 522 (545)
T PRK07768 456 AARVEGVRP---GNAVAVRLDA----------GHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLG 522 (545)
T ss_pred HHhCccccc---ceEEEEEecC----------CCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeC
Confidence 999999975 4555432210 0111122333333222111 134566777777766543334566666
Q ss_pred CCCccCCCCcccchHHHHHHhh
Q 037878 1010 PRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 1010 ~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.++||+|++||++|++|+++|.
T Consensus 523 ~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 523 PGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred CCcCCCCCchhHHHHHHHHhcC
Confidence 6799999999999999988753
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=543.71 Aligned_cols=497 Identities=24% Similarity=0.296 Sum_probs=389.6
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++...+++. |+++|+.+.+ +.+||+||.++++++|..|.+. |+++||+|+++++|+.++++++
T Consensus 10 ~~~l~~~l~~~a~~~--~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~---gi~~~~~V~l~~~~~~~~~~~~ 78 (523)
T PRK08316 10 RQTIGDILRRSARRY--PDKTALVFGD------RSWTYAELDAAVNRVAAALLDL---GLKKGDRVAALGHNSDAYALLW 78 (523)
T ss_pred CCCHHHHHHHHHHHC--CCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHH
Confidence 457899998888764 7899987643 5899999999999999999988 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCccccc----------cccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHTD----------SWVK 616 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~ 616 (2280)
+||+++|++++|+++..+.++ +..+++.+++++++++......+.... .......... .+..
T Consensus 79 ~a~~~~G~~~v~l~~~~~~~~-------i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (523)
T PRK08316 79 LACARAGAVHVPVNFMLTGEE-------LAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLD 151 (523)
T ss_pred HHHHhcCcEEEecccccCHHH-------HHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhh
Confidence 999999999999999998877 788999999999999876544332100 0000000000 0000
Q ss_pred cc-cccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHH
Q 037878 617 NS-KNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695 (2280)
Q Consensus 617 ~~-~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i 695 (2280)
.. ................+++++|+|||||||.||+|.+||++++..+......+++.++++++..+|++|.+++...+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~ 231 (523)
T PRK08316 152 FADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL 231 (523)
T ss_pred HHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHH
Confidence 00 00000011122345678999999999999999999999999998888888888899999999999999999987667
Q ss_pred HHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHH
Q 037878 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTT 775 (2280)
Q Consensus 696 ~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l 775 (2280)
+.++..|+++++.+. .++..+++.++++++|++.++|.++..+.+.... ...+++++|.+++||++++.++
T Consensus 232 ~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~l~~~~~gg~~~~~~~ 302 (523)
T PRK08316 232 GPYLYVGATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPDF-----DTRDLSSLRKGYYGASIMPVEV 302 (523)
T ss_pred HHHHhcCceEEEecC----CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-----ccCCcccceEEEEcCCcCCHHH
Confidence 778899999998753 2799999999999999999999998887654322 2256789999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCe
Q 037878 776 VKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE 855 (2280)
Q Consensus 776 ~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~ 855 (2280)
.+++.+.+ +++.+++.||+||++.+++....... ....+++|+|+++++++|+|+++ ..++.|+.
T Consensus 303 ~~~~~~~~-----~~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~~~~~--~~~~~g~~ 367 (523)
T PRK08316 303 LKELRERL-----PGLRFYNCYGQTEIAPLATVLGPEEH--------LRRPGSAGRPVLNVETRVVDDDG--NDVAPGEV 367 (523)
T ss_pred HHHHHHHc-----CCCceeeeecccccCccccccCcccc--------ccccCCcccCCCCcEEEEEcCCC--CCCCCCCc
Confidence 99999875 46789999999999876654321111 12347889999999999999775 34578999
Q ss_pred eEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHh
Q 037878 856 GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVES 934 (2280)
Q Consensus 856 GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~ 934 (2280)
|||+++|+.++.||+++++.+++.|. ++||+|||+|+++ ||.++++||+||+||++|++|+|.|||+.|.+
T Consensus 368 Gei~v~~~~~~~~y~~~~~~~~~~~~--------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~ 439 (523)
T PRK08316 368 GEIVHRSPQLMLGYWDDPEKTAEAFR--------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYT 439 (523)
T ss_pred ceEEEECCchhhhhcCCHHHHHHHhh--------CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHh
Confidence 99999999999999999999999884 3899999999996 99999999999999999999999999999999
Q ss_pred ccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCc
Q 037878 935 STEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTM 1013 (2280)
Q Consensus 935 ~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~l 1013 (2280)
+++|.+ ++|++.+++..+ +...+++ +..++.. ..+++.+.+++++.. ++.| ..++.++++
T Consensus 440 ~~~v~~---~~v~~~~~~~~~----------~~~~~~v--~~~~~~~~~~~~l~~~~~~~l~~-~~~p---~~i~~v~~~ 500 (523)
T PRK08316 440 HPAVAE---VAVIGLPDPKWI----------EAVTAVV--VPKAGATVTEDELIAHCRARLAG-FKVP---KRVIFVDEL 500 (523)
T ss_pred CCChhe---EeEecccCcccC----------CeEEEEE--EECCCCCCCHHHHHHHHHHhccc-CCCC---cEEEEecCC
Confidence 999865 888887765322 2222222 2232222 224566666666653 4444 445555999
Q ss_pred cCCCCcccchHHHHHHhhcC
Q 037878 1014 SKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1014 P~t~sGKvdR~~L~~~~~~~ 1033 (2280)
|+|++||++|++|+++|.+.
T Consensus 501 p~t~~gKi~r~~l~~~~~~~ 520 (523)
T PRK08316 501 PRNPSGKILKRELRERYAGA 520 (523)
T ss_pred CCCCccceeHHHHHHHHHhh
Confidence 99999999999999998643
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=540.56 Aligned_cols=492 Identities=19% Similarity=0.229 Sum_probs=372.6
Q ss_pred CCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 467 ELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 467 ~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
...++.++++..+. ++++++.+.+ +.+||+||.++++++|+.|+++. |++++++|+++++|+++++++
T Consensus 3 ~~~~~~~~l~~~a~----~~~~a~~~~~------~~~Ty~el~~~v~~lA~~L~~~~--~~~~~~~V~i~~~n~~~~~~~ 70 (529)
T PRK07867 3 SAPTVAELLLPLAE----DDDRGLYFED------SFTSWREHIRGSAARAAALRARL--DPTRPPHVGVLLDNTPEFSLL 70 (529)
T ss_pred ccccHHHHHHHhcc----cCCceEEECC------cEEeHHHHHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCHHHHHH
Confidence 34567888877664 4778876532 57999999999999999999863 689999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccc-ccccccccccc
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSW-VKNSKNLLAEN 625 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 625 (2280)
++||+++|++++|+++..+.++ +.++++++++++++++......+.... +....+..+.. ...........
T Consensus 71 ~lA~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 142 (529)
T PRK07867 71 LGAAALSGIVPVGLNPTRRGAA-------LARDIAHADCQLVLTESAHAELLDGLD-PGVRVINVDSPAWADELAAHRDA 142 (529)
T ss_pred HHHHHhcCCEEEEecCCCChHH-------HHHHHHhCCCeEEEECHhHHHHHHhhc-cCceEEEeccccHHHHhcccCCC
Confidence 9999999999999999999888 889999999999999876544322111 11111111110 00000000011
Q ss_pred ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceE
Q 037878 626 VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTA 705 (2280)
Q Consensus 626 ~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~ 705 (2280)
........++++++|+|||||||.||||+++|+++...+......+++.++|+++..+|++|..+++..++.++..|+++
T Consensus 143 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 222 (529)
T PRK07867 143 EPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI 222 (529)
T ss_pred CCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceE
Confidence 11223456799999999999999999999999999988888888889999999999999999999988888899999998
Q ss_pred EEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcC
Q 037878 706 ILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785 (2280)
Q Consensus 706 vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~ 785 (2280)
++.+. .++..+++.++++++|++..+|+.+..++....... ...+++| +++||+++++. ..+|.+.+
T Consensus 223 ~~~~~----~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~-----~~~~~lr-~~~gg~~~~~~-~~~~~~~~-- 289 (529)
T PRK07867 223 ALRRK----FSASGFLPDVRRYGATYANYVGKPLSYVLATPERPD-----DADNPLR-IVYGNEGAPGD-IARFARRF-- 289 (529)
T ss_pred EecCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCccc-----ccccceE-EEecCCCChHH-HHHHHHHh--
Confidence 88652 278999999999999999999998887765322111 2235678 45688888776 56777653
Q ss_pred CCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCC-----------
Q 037878 786 FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK----------- 854 (2280)
Q Consensus 786 ~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~----------- 854 (2280)
++.+++.||+||+++.++.... ...+++|.|+++ ++|+|++++.. ++.|+
T Consensus 290 ----g~~l~~~YG~TE~~~~~~~~~~------------~~~~~~g~~~~~--~~i~~~~~~~~-~~~g~~~~~~~~~~~~ 350 (529)
T PRK07867 290 ----GCVVVDGFGSTEGGVAITRTPD------------TPPGALGPLPPG--VAIVDPDTGTE-CPPAEDADGRLLNADE 350 (529)
T ss_pred ----CCcEEEeecccccccccccCCC------------CCCCCcCCCCCC--EEEEECCCCCC-CCCCccccccccccCC
Confidence 4679999999999865442210 113568999998 77888665433 46787
Q ss_pred -eeEEEE-cCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 855 -EGEVWI-SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 855 -~GEL~i-~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
.|||++ +|++++.||+|+|+.|++.|. ++||+|||+++++ ||.++|+||+||+||++|+||+|.|||++
T Consensus 351 ~~Gel~i~~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~ 422 (529)
T PRK07867 351 AIGELVNTAGPGGFEGYYNDPEADAERMR--------GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERI 422 (529)
T ss_pred cceEEEEecCCcccccccCChHhhhhhhc--------CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHH
Confidence 999999 999999999999999998884 3899999999996 99999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHHHHHHhcCcceeEEEEecC
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKP 1010 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~lv~~ 1010 (2280)
|.++|+|.+ |+|++++++..+ +...++++. .++...+ .++.+.++++ ..++..+.|..+..+
T Consensus 423 l~~~p~V~~---~~V~g~~~~~~g----------~~~~a~vv~--~~~~~~~~~~l~~~~~~~--~~l~~~~~P~~i~~~ 485 (529)
T PRK07867 423 LLRYPDATE---VAVYAVPDPVVG----------DQVMAALVL--APGAKFDPDAFAEFLAAQ--PDLGPKQWPSYVRVC 485 (529)
T ss_pred HHhCCCeeE---EEEEeccCCCCC----------eeEEEEEEE--CCCCCCCHHHHHHHHHhh--ccCCcccCCeEEEEe
Confidence 999999875 899998876433 222222322 2332222 4555555442 012223344455556
Q ss_pred CCccCCCCcccchHHHHHHhhcCCC
Q 037878 1011 RTMSKTTSGKIKRFECLKQFVDGTL 1035 (2280)
Q Consensus 1011 ~~lP~t~sGKvdR~~L~~~~~~~~~ 1035 (2280)
++||+|++||++|++|+++..+...
T Consensus 486 ~~iP~t~~GKv~r~~L~~~~~~~~~ 510 (529)
T PRK07867 486 AELPRTATFKVLKRQLSAEGVDCAD 510 (529)
T ss_pred eccCCCCCcceeHHHHHHhcCCCCC
Confidence 9999999999999999998765543
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=540.43 Aligned_cols=492 Identities=25% Similarity=0.370 Sum_probs=380.0
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++...+ . .|++.|+...+ + +.+||+||.++++++|+.|++. |+++||+|+++++|+.+++++++
T Consensus 3 ~~l~~~~~~~~-~--~~~~~a~~~~~--~---~~~Ty~eL~~~~~~la~~L~~~---g~~~gd~v~i~~~~~~e~~v~~l 71 (504)
T PRK07514 3 NNLFDALRAAF-A--DRDAPFIETPD--G---LRYTYGDLDAASARLANLLVAL---GVKPGDRVAVQVEKSPEALALYL 71 (504)
T ss_pred ccHHHHHHHHh-h--CCCCeEEEeCC--C---CEEcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHH
Confidence 35677777766 4 37888886532 2 5899999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCC-cccccccccc-cccc--cc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLP-WLHTDSWVKN-SKNL--LA 623 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~--~~ 623 (2280)
||+++|++++|+++..+.++ +..+++.+++++++++........... ..... ....+..... ..+. ..
T Consensus 72 a~~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (504)
T PRK07514 72 ATLRAGAVFLPLNTAYTLAE-------LDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAA 144 (504)
T ss_pred HHHHcCcEEEECCCCCCHHH-------HHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhc
Confidence 99999999999999998887 889999999999999865443221110 00000 1111110000 0000 00
Q ss_pred ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccc
Q 037878 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703 (2280)
Q Consensus 624 ~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~ 703 (2280)
..........+++++||+|||||||.||||++||+++...+......++..++|++++.+|++|..+++..++.++..|+
T Consensus 145 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 224 (504)
T PRK07514 145 PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224 (504)
T ss_pred CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCc
Confidence 00111234567899999999999999999999999999998888888889999999999999999998888889999999
Q ss_pred eEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHh
Q 037878 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT 783 (2280)
Q Consensus 704 ~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~ 783 (2280)
++++.+. .++..+++.+ .++|++..+|.++..++.... ....+++++|.+++||+++++++.++|.+.+
T Consensus 225 ~~~~~~~----~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~-----~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~ 293 (504)
T PRK07514 225 SMIFLPK----FDPDAVLALM--PRATVMMGVPTFYTRLLQEPR-----LTREAAAHMRLFISGSAPLLAETHREFQERT 293 (504)
T ss_pred EEEECCC----CCHHHHHHHH--HhheeeecHHHHHHHHHcCCC-----CCcccccceeeEEecCCCCCHHHHHHHHHHh
Confidence 9988753 3788899988 479999999998877764321 1224578999999999999999999998874
Q ss_pred cCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCC
Q 037878 784 RPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP 863 (2280)
Q Consensus 784 ~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp 863 (2280)
+.++++.||+||++..++..... ....+++|.|+++++++|+|++++ .++|.|+.|||+|+|+
T Consensus 294 ------~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~G~~~~~~~v~i~d~~~~-~~~~~g~~Gel~i~~~ 356 (504)
T PRK07514 294 ------GHAILERYGMTETNMNTSNPYDG----------ERRAGTVGFPLPGVSLRVTDPETG-AELPPGEIGMIEVKGP 356 (504)
T ss_pred ------CCcceeecccccccccccCCccc----------cccCcccccCCCCcEEEEEECCCC-CCCCCCCceEEEEecC
Confidence 45799999999988654422111 112367899999999999996655 4457999999999999
Q ss_pred CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCc
Q 037878 864 SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG 942 (2280)
Q Consensus 864 ~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~ 942 (2280)
+++.||+++|+.+++.|.. ++||+|||+++++ +|.++++||+||+||++|++|+|.|||++|.++++|.+
T Consensus 357 ~~~~gy~~~~~~~~~~~~~-------~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~-- 427 (504)
T PRK07514 357 NVFKGYWRMPEKTAEEFRA-------DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVE-- 427 (504)
T ss_pred CccccccCCchhhhhhccc-------CCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeE--
Confidence 9999999999999998863 4799999999996 99999999999999999999999999999999999865
Q ss_pred eeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCccc
Q 037878 943 CCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKI 1021 (2280)
Q Consensus 943 ~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKv 1021 (2280)
++|++++++..+ ....+++. ..++.. ...++.+.+++++.. +++|. .++.++++|+|++||+
T Consensus 428 -~~v~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~-~~~p~---~i~~v~~~p~t~~gK~ 490 (504)
T PRK07514 428 -SAVIGVPHPDFG----------EGVTAVVV--PKPGAALDEAAILAALKGRLAR-FKQPK---RVFFVDELPRNTMGKV 490 (504)
T ss_pred -EEEEeCCCCCcC----------ceEEEEEE--ECCCCCCCHHHHHHHHHhhccc-CCCCc---EEEEeccCCCCCCcce
Confidence 788887664321 22222222 222222 335666777766654 44443 4455589999999999
Q ss_pred chHHHHHHhhc
Q 037878 1022 KRFECLKQFVD 1032 (2280)
Q Consensus 1022 dR~~L~~~~~~ 1032 (2280)
+|++|++++.+
T Consensus 491 ~r~~l~~~~~~ 501 (504)
T PRK07514 491 QKNLLREQYAD 501 (504)
T ss_pred eHHHHHHHHHh
Confidence 99999888654
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-51 Score=548.99 Aligned_cols=499 Identities=20% Similarity=0.224 Sum_probs=359.7
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
+..+++++.++. +|+++|+.+.+ +++||+||+++++++|+.|.+. |+++||+|+|+++|++++++++||
T Consensus 15 ~~~~~l~~~~~~--~p~~~Al~~~~------~~~Ty~eL~~~~~~~a~~L~~~---Gl~~gd~Vai~~~n~~e~~~~~la 83 (579)
T PLN03102 15 TPITFLKRASEC--YPNRTSIIYGK------TRFTWPQTYDRCCRLAASLISL---NITKNDVVSVLAPNTPAMYEMHFA 83 (579)
T ss_pred cHHHHHHHHHHh--CCCCeEEEECC------cEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcHHHHHHHHH
Confidence 567788888876 48999987532 4799999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CC------CCCCcccccccccc----
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SW------PNLPWLHTDSWVKN---- 617 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~---- 617 (2280)
|+++|++++|+++..+.++ +.++++.+++++++++.+........ .. .....+..+.....
T Consensus 84 ~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (579)
T PLN03102 84 VPMAGAVLNPINTRLDATS-------IAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPS 156 (579)
T ss_pred HHhcCcEEeeccccCCHHH-------HHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCc
Confidence 9999999999999998888 88999999999999976544322110 00 00111111110000
Q ss_pred -----cccccccc-c------cccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCc
Q 037878 618 -----SKNLLAEN-V------VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685 (2280)
Q Consensus 618 -----~~~~~~~~-~------~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl 685 (2280)
........ . .......++|+++|+|||||||.||||+++|+++..........+.....++++..+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 236 (579)
T PLN03102 157 SEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPM 236 (579)
T ss_pred ccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCCh
Confidence 00000000 0 00112456899999999999999999999999975544444444556677889999999
Q ss_pred hhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEE
Q 037878 686 YHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLM 765 (2280)
Q Consensus 686 ~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~ 765 (2280)
+|..++. ..+.++..|+++++... .++..+++.++++++|++.++|+++..+.+..... ..+.++++.++
T Consensus 237 ~h~~g~~-~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~~~~~~~~~ 306 (579)
T PLN03102 237 FHCNGWT-FTWGTAARGGTSVCMRH----VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLD-----LSPRSGPVHVL 306 (579)
T ss_pred hhhcchh-HHHHHHHhcCcEEeecc----CChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccc-----cCCcccceEEE
Confidence 9999875 45667788888877653 26778999999999999999999998887542211 12345788899
Q ss_pred EecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCC----CceeecCCCceeeccccCCCCCceEEEE
Q 037878 766 VAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG----KPIILDWQGRVCCGYVDQNDPDVDIRIV 841 (2280)
Q Consensus 766 ~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~----~~~~~~~~g~~~~g~vG~p~pg~~v~Iv 841 (2280)
+||+++++++.+++.+. ++.+++.||+||++..++...... .+...........|..+.|++ .+.++
T Consensus 307 ~gg~~~~~~~~~~~~~~-------g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~ 377 (579)
T PLN03102 307 TGGSPPPAALVKKVQRL-------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVK 377 (579)
T ss_pred ECCCCCCHHHHHHHHHc-------CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEe
Confidence 99999999998887652 457999999999986443221100 000000000111233444444 45566
Q ss_pred cCCCCcccCCC-CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEEC
Q 037878 842 NPETSEEIGEP-GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVA 919 (2280)
Q Consensus 842 d~~~~~~~~p~-G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~ 919 (2280)
|++.+..+... ++.|||+|+|+++++||||+|+.|++.|. ++||||||+|+++ ||.++|+||+||+||++
T Consensus 378 ~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~--------~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~ 449 (579)
T PLN03102 378 NKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK--------HGWLNTGDVGVIHPDGHVEIKDRSKDIIISG 449 (579)
T ss_pred ccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc--------cCceecCceEEEcCCCeEEEEeccCcEEEEC
Confidence 75544333222 36899999999999999999999999885 3799999999997 99999999999999999
Q ss_pred CeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-----------CHHHHH
Q 037878 920 GRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-----------DKDVIE 988 (2280)
Q Consensus 920 G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-----------~~~l~~ 988 (2280)
|+||+|.|||++|.+||.|.+ ++|++++++..+ +...++++. .++... ..++++
T Consensus 450 G~~v~p~eIE~~l~~~p~V~~---a~vv~~~~~~~~----------~~~~a~v~~--~~~~~~~~~~~~~~~~~~~~l~~ 514 (579)
T PLN03102 450 GENISSVEVENVLYKYPKVLE---TAVVAMPHPTWG----------ETPCAFVVL--EKGETTKEDRVDKLVTRERDLIE 514 (579)
T ss_pred CEEECHHHHHHHHHhCCCcce---eEEEeccCcccc----------ceeEEEEEe--cCcccccccccccccccHHHHHH
Confidence 999999999999999999876 889998876432 222233322 222111 134555
Q ss_pred HHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 989 NIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 989 ~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
.++++|+. ++ .|..++.+++||+|++||++|++|+++..+
T Consensus 515 ~~~~~L~~-~~---~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 515 YCRENLPH-FM---CPRKVVFLQELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred HHHhhccc-cc---CCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 55555543 44 444555669999999999999999887543
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=547.22 Aligned_cols=494 Identities=25% Similarity=0.349 Sum_probs=371.8
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++.+++. |+++|+...+ +.+||.||.++++++|+.|.+.. |+++||+|+++++|++++++++
T Consensus 23 ~~~~~~~l~~~~~~~--p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~--gi~~gd~V~i~~~n~~e~~~~~ 92 (562)
T PRK12492 23 YKSVVEVFERSCKKF--ADRPAFSNLG------VTLSYAELERHSAAFAAYLQQHT--DLVPGDRIAVQMPNVLQYPIAV 92 (562)
T ss_pred cCcHHHHHHHHHHhC--CCCeeEecCC------ceeeHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCHHHHHHH
Confidence 357888998888764 8888886421 47999999999999999998731 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--C--------------CCCCCcccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--S--------------WPNLPWLHT 611 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~--------------~~~~~~~~~ 611 (2280)
|||+++|++++|+++.++.++ +.++++++++++++++.......... . .+....+..
T Consensus 93 la~~~~G~v~v~~~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (562)
T PRK12492 93 FGALRAGLIVVNTNPLYTARE-------MRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLV 165 (562)
T ss_pred HHHHHcCeEEeccCccCCHHH-------HHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhc
Confidence 999999999999999998887 88999999999999865332111000 0 000000000
Q ss_pred cc----c------------c--ccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC-
Q 037878 612 DS----W------------V--KNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK- 672 (2280)
Q Consensus 612 ~~----~------------~--~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~- 672 (2280)
.. . . ...................+++++|+|||||||.||||+++|+++...+......+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~ 245 (562)
T PRK12492 166 NTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245 (562)
T ss_pred ccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhc
Confidence 00 0 0 000000000001122356789999999999999999999999999887766555443
Q ss_pred --------CCC-CcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHH
Q 037878 673 --------STS-KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMV 743 (2280)
Q Consensus 673 --------~~~-~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~ 743 (2280)
+.. +++++..+|++|.+++...++..+..|+.+++... ..++..+++.++++++|++..+|.++..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 322 (562)
T PRK12492 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITN---PRDIPGFIKELGKWRFSALLGLNTLFVALM 322 (562)
T ss_pred ccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecC---CcCHHHHHHHHHHhCCceeeCcHHHHHHHH
Confidence 222 45778899999999987777888888988776543 137889999999999999999999998876
Q ss_pred HHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCc
Q 037878 744 RRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGR 823 (2280)
Q Consensus 744 ~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~ 823 (2280)
+.... ...+++++|.+++||+++++++.++|.+.+ ++++++.||+||++.+++...... .
T Consensus 323 ~~~~~-----~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~---------~ 382 (562)
T PRK12492 323 DHPGF-----KDLDFSALKLTNSGGTALVKATAERWEQLT------GCTIVEGYGLTETSPVASTNPYGE---------L 382 (562)
T ss_pred hCcCc-----ccccccceeEEEeccccCCHHHHHHHHHHh------CCceeeccCccccCceeeecCCcc---------c
Confidence 54221 225678999999999999999999998763 578999999999987655432110 1
Q ss_pred eeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-
Q 037878 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII- 902 (2280)
Q Consensus 824 ~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~- 902 (2280)
...+++|+|+++++++|+|+++ ..++.|+.|||+|+|+.++.||+++|+.|.+.|.. ++||+|||+|+++
T Consensus 383 ~~~~~~G~p~~~~~v~ivd~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~g~~~TGD~g~~~~ 453 (562)
T PRK12492 383 ARLGTVGIPVPGTALKVIDDDG--NELPLGERGELCIKGPQVMKGYWQQPEATAEALDA-------EGWFKTGDIAVIDP 453 (562)
T ss_pred ccCCccceecCCCEEEEECCCC--CCCCCCCceEEEEeCCccccccccCchhhhhcccC-------CCceecCcEEEECC
Confidence 1236789999999999999865 34579999999999999999999999999988742 4899999999997
Q ss_pred CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC
Q 037878 903 DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982 (2280)
Q Consensus 903 dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 982 (2280)
+|.++|+||+||+||++|++|+|.|||++|.+||.|.+ ++|++.+++..+ ....++++ ..++...
T Consensus 454 ~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v~--~~~~~~~ 518 (562)
T PRK12492 454 DGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVAN---CAAIGVPDERSG----------EAVKLFVV--ARDPGLS 518 (562)
T ss_pred CCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeE---EEEEeccCCCCC----------ceEEEEEE--eCCCCCC
Confidence 99999999999999999999999999999999999865 888887764322 12222222 2222222
Q ss_pred CHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 983 DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 983 ~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
.+++.+.+++++.. ++ .|..+..+++||+|.+||++|++|+++
T Consensus 519 ~~~i~~~~~~~l~~-~~---~P~~i~~~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 519 VEELKAYCKENFTG-YK---VPKHIVLRDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred HHHHHHHHHHhccc-cc---CCcEEEEeccCCCCCCCceeHHHHHhh
Confidence 34556666666554 44 444555669999999999999998764
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=536.94 Aligned_cols=475 Identities=21% Similarity=0.318 Sum_probs=368.1
Q ss_pred cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCC
Q 037878 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563 (2280)
Q Consensus 484 ~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~ 563 (2280)
.|+++|+....+ + +.+||+||.++++++|+.|.+. |+++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 8 ~p~~~a~~~~~~-~---~~~ty~~l~~~v~~~a~~l~~~---g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~ 80 (488)
T PRK09088 8 QPQRLAAVDLAL-G---RRWTYAELDALVGRLAAVLRRR---GCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWR 80 (488)
T ss_pred CCCceEEEecCC-C---cEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCcc
Confidence 488998865322 2 4799999999999999999988 89999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccCCCCCCCeEEEEec
Q 037878 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFT 643 (2280)
Q Consensus 564 ~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyT 643 (2280)
.+.++ +..+++++++++++++....... ......+.+...... ..........++++++++||
T Consensus 81 ~~~~~-------~~~~~~~~~~~~ii~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~T 143 (488)
T PRK09088 81 LSASE-------LDALLQDAEPRLLLGDDAVAAGR-------TDVEDLAAFIASADA---LEPADTPSIPPERVSLILFT 143 (488)
T ss_pred CCHHH-------HHHHHHhCCCCEEEEcchhhccc-------ccccchhhhhhhccc---cccccCCCCCCCCceEEEeC
Confidence 98887 88999999999999875432210 011111111110000 00111223456899999999
Q ss_pred cCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHH
Q 037878 644 SGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLET 723 (2280)
Q Consensus 644 SGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~ 723 (2280)
|||||.||+|.++|+++...+...........++++++.+|++|.++++..+..++..|+++++.+. + ++..++..
T Consensus 144 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~--~--~~~~~~~~ 219 (488)
T PRK09088 144 SGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG--F--EPKRTLGR 219 (488)
T ss_pred CCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC--C--CHHHHHHH
Confidence 9999999999999999988888777777788999999999999999998888899999999887653 2 67777777
Q ss_pred Hh--hcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccc
Q 037878 724 MS--KYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801 (2280)
Q Consensus 724 i~--~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE 801 (2280)
+. ++++|++..+|.++..+.+.... ...+++++|.+++||++++.+.++++.+. ++.+++.||+||
T Consensus 220 ~~~~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-------g~~v~~~YG~TE 287 (488)
T PRK09088 220 LGDPALGITHYFCVPQMAQAFRAQPGF-----DAAALRHLTALFTGGAPHAAEDILGWLDD-------GIPMVDGFGMSE 287 (488)
T ss_pred HHhhccCCcEEeeHHHHHHHHHhCcCc-----CccccccceEEEecCCCCCHHHHHHHHHh-------CCceeeeecccc
Confidence 75 48899999999988877643211 12457899999999999999988887753 467999999999
Q ss_pred cccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHh
Q 037878 802 NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFR 881 (2280)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~ 881 (2280)
++.+.......... ....+++|.|.|+++++|+|+++ ..++.|+.|||+|+|++++.||+|+++.|++.|.
T Consensus 288 ~~~~~~~~~~~~~~-------~~~~~~vG~~~~~~~~~i~d~~~--~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~ 358 (488)
T PRK09088 288 AGTVFGMSVDCDVI-------RAKAGAAGIPTPTVQTRVVDDQG--NDCPAGVPGELLLRGPNLSPGYWRRPQATARAFT 358 (488)
T ss_pred cccccccCCCcccc-------cccCCccccCCCCcEEEEECCCC--CCCcCCCceEEEEECCccchhhcCChhhhhhhhc
Confidence 98654322111000 11246799999999999999764 3457899999999999999999999999988875
Q ss_pred hhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEecccccccccccc
Q 037878 882 NELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960 (2280)
Q Consensus 882 ~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~ 960 (2280)
. ++||+|||+|+++ ||.++|+||+||+||++|++|+|.|||++|.++|+|.+ ++|++++++..+
T Consensus 359 ~-------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~---~~v~~~~~~~~g----- 423 (488)
T PRK09088 359 G-------DGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRE---CAVVGMADAQWG----- 423 (488)
T ss_pred C-------CCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcce---EEEEeCCCccCC-----
Confidence 3 4899999999996 99999999999999999999999999999999999875 888887765322
Q ss_pred ccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 961 VSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 961 ~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
+...+++. ..++.. ...++.+.+++++.. +++| ..+..+++||+|++||++|++|++++.+.
T Consensus 424 -----~~~~~~v~--~~~~~~~~~~~l~~~~~~~l~~-~~~p---~~i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 424 -----EVGYLAIV--PADGAPLDLERIRSHLSTRLAK-YKVP---KHLRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred -----ceeEEEEE--ECCCCCCCHHHHHHHHHhhCcC-CCCC---CEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 11222222 222222 235566666666653 4444 34455699999999999999999987653
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=558.21 Aligned_cols=527 Identities=16% Similarity=0.212 Sum_probs=372.6
Q ss_pred CCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHH
Q 037878 466 PELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVD 545 (2280)
Q Consensus 466 ~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~v 545 (2280)
+...++.++++.++++. |+++|+.+.+.+....+++||+||.++++++|++|++. |+++||+|+++++|++++++
T Consensus 46 ~~~~~l~~~l~~~a~~~--pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~~~ 120 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEA--PDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDL---GLDPGRPVMILSGNSIEHAL 120 (624)
T ss_pred CcccCHHHHHHHHHHHC--CCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEecCCCHHHHH
Confidence 34667899999888764 88999876542122347899999999999999999988 99999999999999999999
Q ss_pred HHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccc--hhhccCCCCCCCcccccccc--------
Q 037878 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYH--SAVRVGSWPNLPWLHTDSWV-------- 615 (2280)
Q Consensus 546 a~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~--~~~~~~~~~~~~~~~~~~~~-------- 615 (2280)
++|||+++|++++|+++.++.... ...++.++++++++++++++.... .............+..+...
T Consensus 121 ~~lA~~~~G~v~vpl~p~~~~~~~--~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 198 (624)
T PRK12582 121 MTLAAMQAGVPAAPVSPAYSLMSH--DHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAF 198 (624)
T ss_pred HHHHHHHcCCeEeeccCccccccC--CHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccccH
Confidence 999999999999999998875110 011288999999999999875311 11110000011111111000
Q ss_pred cccccccccc--ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCC---CcEEEEEcCchhhhh
Q 037878 616 KNSKNLLAEN--VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTS---KTVLVSWLPQYHDMG 690 (2280)
Q Consensus 616 ~~~~~~~~~~--~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~---~d~~l~~~pl~h~~g 690 (2280)
.......... ........++|+++|+|||||||.||||++||+++++.+......+.... +++++.++|++|.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g 278 (624)
T PRK12582 199 ADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMG 278 (624)
T ss_pred HHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHh
Confidence 0000000000 00112346789999999999999999999999999988776655555444 579999999999999
Q ss_pred HHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCC
Q 037878 691 LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770 (2280)
Q Consensus 691 l~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~ 770 (2280)
+...++.++..|+++++.++.........+++.++++++|++.++|.++..+.+....... ....++++||.+++||++
T Consensus 279 ~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~-~~~~~~~slr~i~~gGa~ 357 (624)
T PRK12582 279 GNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDA-LRRSFFKNLRLMAYGGAT 357 (624)
T ss_pred HHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHH-HHHHHhhheeEEEecCCC
Confidence 8878888999999998865321111223456778899999999999999888765432211 112357899999999999
Q ss_pred CCHHHHHHHHHHhc-CCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCccc
Q 037878 771 VRQTTVKRFVELTR-PFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849 (2280)
Q Consensus 771 l~~~l~~~~~~~~~-~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~ 849 (2280)
+++++.++|.+... .+| .++.++|+||+||++.+++..... ....+++|+|+||++++|+
T Consensus 358 l~~~~~~~~~~~~~~~~g-~~~~l~~~YG~TE~~~~~~~~~~~----------~~~~~svG~p~pg~~v~i~-------- 418 (624)
T PRK12582 358 LSDDLYERMQALAVRTTG-HRIPFYTGYGATETAPTTTGTHWD----------TERVGLIGLPLPGVELKLA-------- 418 (624)
T ss_pred CCHHHHHHHHHHHHhhcC-CCceEEeccccccccceeecccCC----------CCCCCCCCcCCCCcEEEEc--------
Confidence 99999999987531 111 235799999999998765432111 1124689999999999985
Q ss_pred CCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEE-E----CCeEEEEecCCCeEEE-CCeee
Q 037878 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-I----DGKFFITGRIKDLIIV-AGRNV 923 (2280)
Q Consensus 850 ~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~-~----dG~l~~~GR~dd~IKi-~G~rI 923 (2280)
+.|+.|||+|+|++++.||||+|+.|++.|.. +|||+|||+|++ + ||+|+|+||+||+||+ +|++|
T Consensus 419 -~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~-------dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i 490 (624)
T PRK12582 419 -PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDE-------EGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWV 490 (624)
T ss_pred -cCCCceEEEEECCcccccccCCccchhhhcCc-------cCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEe
Confidence 35788999999999999999999999998853 489999999998 3 4899999999999997 79999
Q ss_pred chHHHH--HHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-----CCCHHHHHHHHHHHHH
Q 037878 924 YSADVE--KTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-----PVDKDVIENIKTRVVE 996 (2280)
Q Consensus 924 ~~~EIE--~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-----~~~~~l~~~l~~~l~~ 996 (2280)
+|.||| .++.+||.|.+ |+|++.+++.+++... ++. .++..+. ..++. ...+++.+.++++|.+
T Consensus 491 ~p~~iE~e~~l~~~p~V~~---a~VvG~~~~~~g~lv~--p~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~ 561 (624)
T PRK12582 491 SVGTLRPDAVAACSPVIHD---AVVAGQDRAFIGLLAW--PNP---AACRQLA-GDPDAAPEDVVKHPAVLAILREGLSA 561 (624)
T ss_pred chHHHHHHHHHhcCcchhe---EEEEcCCCCcEEEEEe--cCH---HHHHHHH-hcCCCCHHHHhcCHHHHHHHHHHHHH
Confidence 999885 68889999976 8999987665432100 000 0000000 01110 1235677888887776
Q ss_pred hc---Ccce-eEEEEecCCCcc------CCCCcccchHHHHHHhhcCCCC
Q 037878 997 EH---GVTV-ASVKLIKPRTMS------KTTSGKIKRFECLKQFVDGTLN 1036 (2280)
Q Consensus 997 ~~---~~~~-~~~~lv~~~~lP------~t~sGKvdR~~L~~~~~~~~~~ 1036 (2280)
.. +... .+..+..++++| +|++||+.|+++++.|.+.+.+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ 611 (624)
T PRK12582 562 HNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVER 611 (624)
T ss_pred HHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHH
Confidence 32 1111 233333335554 6778889999999999876544
|
|
| >cd08153 srpA_like Catalase-like heme-binding proteins similar to the uncharacterized srpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=506.58 Aligned_cols=270 Identities=21% Similarity=0.251 Sum_probs=236.5
Q ss_pred eecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCC--CcccccccccEEEeeccCCCCCCcce
Q 037878 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSAD--DDARIDARGAAIRIFSDLNGNTSSLL 1788 (2280)
Q Consensus 1711 ~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~--~D~~~~~rG~Aik~~~~~~~~~~~~~ 1788 (2280)
..+.|.+||||+|++|+|+|++++++++++++|+ |++|||++||||++|++ +|+.+|+|||||||+.+ ++++|
T Consensus 11 ~~~~R~~HaKG~~~~G~f~v~~~~~~~~~~~~f~-~~~~pv~vRfS~~~g~p~~~D~~~d~rG~AiK~~l~----d~~~~ 85 (295)
T cd08153 11 HPGFRRNHAKGICVSGTFTPSGAAASLSRAPLFS-GGSVPVTGRFSLGGGNPKAPDDAANPRGMALKFRLP----DGEQW 85 (295)
T ss_pred CCccccccCceeeEEEEEEECCCcchhhhccccC-CCceEEEEEeccCCCCCCCCCCCCCCCeEEEEEEcC----CCCeE
Confidence 3379999999999999999999999999999999 89999999999999975 39999999999999854 24579
Q ss_pred eeecccccccccCChhhHHHHHhhccch---------hhhhhccCcchhhhhhhc--ccCCCccccceeeeeeeEEEEEe
Q 037878 1789 DLTLKTGNAFYARTIGDFATWLVCGLAA---------REEHVKRVPHIRDAVWKS--LRLSDSYAEMHYYSNICRLFRFT 1857 (2280)
Q Consensus 1789 D~~~~n~p~f~~~~~~~f~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~p~s~~~~~y~s~~~~~~~~~ 1857 (2280)
||+|+|+|+||++|+++|++|+++..++ -..++..||.....+... .+.|.||++++|||+|+|+|+|+
T Consensus 86 D~v~~n~pvF~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~f~~~~P~~~~~~~~~~~~~~p~s~~~~~y~s~~~f~f~~~ 165 (295)
T cd08153 86 RMVMNSFPVFPVRTPEEFLALLKAIAPDATGKPDPAKLKAFLAAHPEAAAFLAWIKTAPPPASFANTTYYGVNAFYFTNA 165 (295)
T ss_pred eEeEecCcccccCCHHHHHHHHHhhCcCcCCCCCHHHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCCccceeeEEEECC
Confidence 9999999999999999999999987632 135666777554433322 25899999999999999999999
Q ss_pred CCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCCCcc
Q 037878 1858 DGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDE 1937 (2280)
Q Consensus 1858 ~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~d~~ 1937 (2280)
+|+.+||||+++|.+|+.+++.+++ +.+++|||++||.+||+++ +++|+|+||+++++|
T Consensus 166 ~G~~~~vk~~~~P~~g~~~l~~~~~------------------~~~~~d~l~~~l~~~l~~g-~~~f~l~vQl~~~~d-- 224 (295)
T cd08153 166 NGKRQPVRWRFVPEDGVKYLSDEEA------------------AKLGPDFLFDELAQRLAQG-PVRWDLVLQLAEPGD-- 224 (295)
T ss_pred CCCEEEEEEEEEECCCCCCCCHHHh------------------ccCCcchhHHHHHHHHHhC-CceEEEEEEEcCCCC--
Confidence 9999999999999877766654432 3347899999999999997 599999999998877
Q ss_pred ccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHHhhhH
Q 037878 1938 AMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQH 2015 (2280)
Q Consensus 1938 ~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~s~~ 2015 (2280)
+++|+|++|||+ +|+++||+|+|+++.++ ++||+++|||||+++||++++ |||+|+|+.+|.+|++
T Consensus 225 ----~i~D~t~~Wpe~-~p~~~vg~l~l~~~~~~~~~~~e~l~F~P~~~~~gi~~~~-------Dpi~~~R~~aY~~s~~ 292 (295)
T cd08153 225 ----PTDDPTKPWPAD-RKEVDAGTLTITKVAPDQGGACRDINFDPLVLPDGIEPSD-------DPLLAARSAAYAVSFS 292 (295)
T ss_pred ----cCCCCCccCCCC-CceeEEEEEEECCCCccchhhhhheeeCCccCCCCCCCCC-------ChHHhhhhhHHHHHHh
Confidence 566999999999 89999999999988444 689999999999999999999 9999999999999999
Q ss_pred hhc
Q 037878 2016 LRN 2018 (2280)
Q Consensus 2016 ~R~ 2018 (2280)
+|.
T Consensus 293 ~R~ 295 (295)
T cd08153 293 RRQ 295 (295)
T ss_pred hcC
Confidence 995
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=544.57 Aligned_cols=499 Identities=23% Similarity=0.331 Sum_probs=375.7
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++.++. +|+++|+... ++ +++||+||+++++++|+.|++. |+++||+|+++++|++++++++|
T Consensus 23 ~~l~~~~~~~~~~--~pd~~a~~~~--~~---~~~Ty~~l~~~v~~la~~l~~~---G~~~gd~V~i~~~n~~~~~~~~l 92 (547)
T PRK06087 23 ASLADYWQQTARA--MPDKIAVVDN--HG---ASYTYSALDHAASRLANWLLAK---GIEPGDRVAFQLPGWCEFTIIYL 92 (547)
T ss_pred CCHHHHHHHHHHH--CCCceEEEcC--CC---CEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHH
Confidence 4688899888876 4889988642 33 4799999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch-----hhcc--CCCCCCC-ccccccccc----
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS-----AVRV--GSWPNLP-WLHTDSWVK---- 616 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~-----~~~~--~~~~~~~-~~~~~~~~~---- 616 (2280)
||+++|++++|+++..+.++ +..++++++++.++++..... .+.. ...+... .+..+....
T Consensus 93 A~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (547)
T PRK06087 93 ACLKVGAVSVPLLPSWREAE-------LVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSS 165 (547)
T ss_pred HHHHcCcEEeccchhcCHHH-------HHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCc
Confidence 99999999999999998877 889999999999998753211 0000 0001000 000000000
Q ss_pred -ccccccc--ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH
Q 037878 617 -NSKNLLA--ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 617 -~~~~~~~--~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
....... ..........++|+++|+|||||||.||||++||+++..........+++.+++++++++|++|.++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 245 (547)
T PRK06087 166 LSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLH 245 (547)
T ss_pred cCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHH
Confidence 0000000 0001122346789999999999999999999999999888888888888899999999999999999888
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
.++.++..|+++++.+. .++..+++.++++++|++..+|..+..++...... ..+++++|.+++||+++++
T Consensus 246 ~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~-----~~~~~~lr~i~~gG~~~~~ 316 (547)
T PRK06087 246 GVTAPFLIGARSVLLDI----FTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ-----PADLSALRFFLCGGTTIPK 316 (547)
T ss_pred HHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC-----CCCCCCeEEEEEcCCCCCH
Confidence 89999999999988753 37899999999999999876655554444432221 2467899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCC
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G 853 (2280)
++.+.+.+. ++++++.||+||++..++....... ....+++|.|++++.++++|+++ ..++.|
T Consensus 317 ~~~~~~~~~-------~~~l~~~YG~TE~~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~d~~~--~~~~~g 379 (547)
T PRK06087 317 KVARECQQR-------GIKLLSVYGSTESSPHAVVNLDDPL--------SRFMHTDGYAAAGVEIKVVDEAR--KTLPPG 379 (547)
T ss_pred HHHHHHHHc-------CCcEEEEecccccCCccccCCCcch--------hhcCCcCCccCCCceEEEEcCCC--CCCcCC
Confidence 998887652 5679999999999876543321110 11235689999999999999765 345799
Q ss_pred CeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHH
Q 037878 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTV 932 (2280)
Q Consensus 854 ~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L 932 (2280)
+.|||+++|+.++.||+++++.+.+.|.. ++||+|||+++++ +|.++++||.||+||++|++|+|.|||++|
T Consensus 380 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l 452 (547)
T PRK06087 380 CEGEEASRGPNVFMGYLDEPELTARALDE-------EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDIL 452 (547)
T ss_pred CcceEEEecccccccccCCHHHHHHHhCC-------CCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHH
Confidence 99999999999999999999999888753 4899999999997 999999999999999999999999999999
Q ss_pred HhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCC
Q 037878 933 ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRT 1012 (2280)
Q Consensus 933 ~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~ 1012 (2280)
.++|+|.+ ++|++.+++..+ ....+++............++.+.+++. .++..+.|..+..+++
T Consensus 453 ~~~~~v~~---~~v~~~~~~~~g----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~l~~~~~P~~i~~v~~ 516 (547)
T PRK06087 453 LQHPKIHD---ACVVAMPDERLG----------ERSCAYVVLKAPHHSLTLEEVVAFFSRK---RVAKYKYPEHIVVIDK 516 (547)
T ss_pred HhCCCeeE---EEEEecCCCCcC----------ceEEEEEEECCCCCCCCHHHHHHHHHhc---cccccCCCeEEEEecc
Confidence 99999875 888887765332 2222222221111112223444444332 2223334455555699
Q ss_pred ccCCCCcccchHHHHHHhhcC
Q 037878 1013 MSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1013 lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
||+|.|||++|++|++++.+.
T Consensus 517 iP~t~sGK~~r~~l~~~~~~~ 537 (547)
T PRK06087 517 LPRTASGKIQKFLLRKDIMRR 537 (547)
T ss_pred CCCCCCCcCcHHHHHHHHHHH
Confidence 999999999999998886543
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=543.08 Aligned_cols=500 Identities=20% Similarity=0.301 Sum_probs=383.4
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.++.++... |+++|+.+.+ +.+||.||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 16 ~~n~~~~~~~~a~~~--~~~~a~~~~~------~~~ty~~l~~~~~~~a~~L~~~---g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 16 RQNWVNQLARHALMQ--PDAPALRFLG------NTTTWRELDDRVAALAGALSRR---GVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccCHHHHHHHHHHHC--CCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHH
Confidence 456888888888764 8999987543 4799999999999999999988 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCc-ccccccc-c---cccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPW-LHTDSWV-K---NSKN 620 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~-~~~~~~~-~---~~~~ 620 (2280)
+||+++|++++|+++..+.++ +..++++++++.++++.......... ..+.... +...+.. . ...+
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~-------~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPE-------IAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYED 157 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHH-------HHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHH
Confidence 999999999999999988877 88999999999999986543322110 0011110 0000000 0 0000
Q ss_pred c--ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCC-CCCcEEEEEcCchhhhhHHHHHHH
Q 037878 621 L--LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS-TSKTVLVSWLPQYHDMGLIGGLFT 697 (2280)
Q Consensus 621 ~--~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~gl~~~i~~ 697 (2280)
. .............+++++++|||||||.||||+++|+++...+......++. ..++++++.+|++|.+++ ..++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~ 236 (542)
T PRK07786 158 LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGI-GSMLP 236 (542)
T ss_pred HhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHH-HHHHH
Confidence 0 0001111223456789999999999999999999999999888877777776 678899999999999887 57888
Q ss_pred HHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHH
Q 037878 698 AMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVK 777 (2280)
Q Consensus 698 ~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~ 777 (2280)
++..|+++++.+...+ +|..+++.++++++|++.++|+++..+........ .+ .++|.+++||+++++++.+
T Consensus 237 ~l~~G~~~v~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-----~~-~~lr~i~~gg~~~~~~~~~ 308 (542)
T PRK07786 237 GLLLGAPTVIYPLGAF--DPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP-----RD-LALRVLSWGAAPASDTLLR 308 (542)
T ss_pred HHHccCEEEEccCCCc--CHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc-----cC-cceEEEEECCCCCCHHHHH
Confidence 9999999998754433 89999999999999999999999988876433221 22 3699999999999999999
Q ss_pred HHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeE
Q 037878 778 RFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857 (2280)
Q Consensus 778 ~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GE 857 (2280)
++.+.+ ++..+++.||+||++.+++....... ....+++|+|+|++.++|+|+++ ..++.|+.||
T Consensus 309 ~~~~~~-----~~~~l~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~d~~~--~~~~~g~~Ge 373 (542)
T PRK07786 309 QMAATF-----PEAQILAAFGQTEMSPVTCMLLGEDA--------IRKLGSVGKVIPTVAARVVDENM--NDVPVGEVGE 373 (542)
T ss_pred HHHHHc-----CCCeEEeeecccccccceEecCcccc--------cccCCCccccCCCceEEEECCCC--CCCcCCCceE
Confidence 999875 46789999999999876553321111 11236789999999999999765 3457899999
Q ss_pred EEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhcc
Q 037878 858 VWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESST 936 (2280)
Q Consensus 858 L~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p 936 (2280)
|+++|+.+++||+++|+.|++.|. ++||+|||+++++ ||.++++||.||+||++|++|+|.|||++|.++|
T Consensus 374 l~v~g~~~~~gy~~~~~~~~~~f~--------~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~ 445 (542)
T PRK07786 374 IVYRAPTLMSGYWNNPEATAEAFA--------GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHP 445 (542)
T ss_pred EEEEChhhhhhhcCCHHHHHHHhh--------CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCC
Confidence 999999999999999999999885 3799999999996 9999999999999999999999999999999999
Q ss_pred CCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCC
Q 037878 937 EHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKT 1016 (2280)
Q Consensus 937 ~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t 1016 (2280)
+|.+ |+|++.+++..+ .....+++...........++.+.+++++.. ++ .|..++.+++||+|
T Consensus 446 ~v~~---~~v~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~-~~---~P~~i~~v~~iP~t 508 (542)
T PRK07786 446 DIVE---VAVIGRADEKWG----------EVPVAVAAVRNDDAALTLEDLAEFLTDRLAR-YK---HPKALEIVDALPRN 508 (542)
T ss_pred CccE---EEEEeccCcccC----------ceEEEEEEECCCCCCCCHHHHHHHHHhhccC-CC---CCCEEEEeccCCCC
Confidence 9865 888887654321 2222222221111111224555555555543 33 44445556999999
Q ss_pred CCcccchHHHHHHhhcCC
Q 037878 1017 TSGKIKRFECLKQFVDGT 1034 (2280)
Q Consensus 1017 ~sGKvdR~~L~~~~~~~~ 1034 (2280)
++||++|++|++++.+..
T Consensus 509 ~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 509 PAGKVLKTELRERYGACV 526 (542)
T ss_pred CcccccHHHHHHHHHhhh
Confidence 999999999999987654
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=541.32 Aligned_cols=492 Identities=18% Similarity=0.242 Sum_probs=374.2
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.++++.+++ |+++|++..+ +.+||+||.++++++|+.|.+. |+++||+|+++++|++++++++|
T Consensus 25 ~~~~~~~~~~a~----p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~---g~~~g~~V~v~~~n~~~~~~~~l 91 (536)
T PRK10946 25 LPLTDILTRHAA----SDAIAVICGE------RQFSYRELNQASDNLACSLRRQ---GIKPGDTALVQLGNVAEFYITFF 91 (536)
T ss_pred ccHHHHHHHhhC----CCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCChHHHHHHHH
Confidence 368889988775 7899987532 5799999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccc--------hhhccCCCCCCCccccccc--cccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYH--------SAVRVGSWPNLPWLHTDSW--VKNS 618 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~ 618 (2280)
||+++|++++++++..+..+ +..++++++++.++++.... ..+.. ..+....+..... ....
T Consensus 92 a~~~~G~v~v~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 163 (536)
T PRK10946 92 ALLKLGVAPVNALFSHQRSE-------LNAYASQIEPALLIADRQHALFSDDDFLNTLVA-EHSSLRVVLLLNDDGEHSL 163 (536)
T ss_pred HHHHcCeEEecCCccccHHH-------HHHHHhhcCCCEEEEeccccccchHHHHHHHHh-hCCCceEEEEecCCCCccH
Confidence 99999997776655544444 67888999999999875321 11110 0011111110000 0000
Q ss_pred ccc--ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH-HH
Q 037878 619 KNL--LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG-GL 695 (2280)
Q Consensus 619 ~~~--~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~i 695 (2280)
... ............++++++|+|||||||.||||++||+++...+......+++.+++++++.+|++|.+++.. .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 243 (536)
T PRK10946 164 DDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGA 243 (536)
T ss_pred HHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhH
Confidence 000 000111123446789999999999999999999999999999998888899999999999999999888653 57
Q ss_pred HHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHH
Q 037878 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTT 775 (2280)
Q Consensus 696 ~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l 775 (2280)
+.++..|+++++.+. .++..+++.++++++|++..+|.++..+++...... ...+++++|.+++||+++++++
T Consensus 244 ~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~---~~~~~~~l~~v~~gg~~l~~~~ 316 (536)
T PRK10946 244 LGVFLAGGTVVLAPD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG---SRAQLASLKLLQVGGARLSETL 316 (536)
T ss_pred HHHhhcCcEEEECCC----CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC---ccccccceeEEEECCCCCCHHH
Confidence 888999999887643 278889999999999999999999988876542221 1245789999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCC-CCceEEEEcCCCCcccCCCCC
Q 037878 776 VKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQND-PDVDIRIVNPETSEEIGEPGK 854 (2280)
Q Consensus 776 ~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~-pg~~v~Ivd~~~~~~~~p~G~ 854 (2280)
.++|.+.+ ++++++.||+||+++..+... .+ .....+++|+|+ |+.+++|+|+++ +.++.|+
T Consensus 317 ~~~~~~~~------g~~~~~~YG~tE~~~~~~~~~---~~------~~~~~~~~G~p~~~~~~v~i~d~~~--~~~~~g~ 379 (536)
T PRK10946 317 ARRIPAEL------GCQLQQVFGMAEGLVNYTRLD---DS------DERIFTTQGRPMSPDDEVWVADADG--NPLPQGE 379 (536)
T ss_pred HHHHHHhc------CCeEEEeecccccceeeecCC---Cc------cccccccCCcccCCCceEEEECCCC--CCCCCCC
Confidence 99998764 568999999999764433211 11 012246789998 899999999765 4457999
Q ss_pred eeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHH
Q 037878 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVE 933 (2280)
Q Consensus 855 ~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~ 933 (2280)
.|||+++|+.++.||+++|+.|++.|.. ++||+|||+|+++ ||.++++||.||+||++|++|+|.|||++|.
T Consensus 380 ~Gel~v~g~~~~~GY~~~~~~t~~~~~~-------d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~ 452 (536)
T PRK10946 380 VGRLMTRGPYTFRGYYKSPQHNASAFDA-------NGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL 452 (536)
T ss_pred ccEEEEecCccchhhcCCcccchhhccc-------CCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHH
Confidence 9999999999999999999999998864 4899999999997 9999999999999999999999999999999
Q ss_pred hccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhcCcceeEEEEecCCC
Q 037878 934 SSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTR-VVEEHGVTVASVKLIKPRT 1012 (2280)
Q Consensus 934 ~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~~~~~lv~~~~ 1012 (2280)
++|+|.+ ++|++.+++..+ ...+++++ ..++ ....++.+.+++. ++. ++.| ..+..+++
T Consensus 453 ~~~~v~~---~~v~~~~~~~~g---------~~~~a~vv---~~~~-~~~~~l~~~~~~~~l~~-~~~P---~~~~~~~~ 512 (536)
T PRK10946 453 RHPAVIH---AALVSMEDELMG---------EKSCAFLV---VKEP-LKAVQLRRFLREQGIAE-FKLP---DRVECVDS 512 (536)
T ss_pred hCCCcce---EEEEcCCCcccC---------ceEEEEEE---eCCC-CCHHHHHHHHHhCCccc-cccC---cEEEEecc
Confidence 9999975 888887765332 11222222 2222 3335566666554 443 4444 44455599
Q ss_pred ccCCCCcccchHHHHHHhhc
Q 037878 1013 MSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1013 lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+|+|++||++|++|++++.+
T Consensus 513 iP~t~~GKv~r~~L~~~~~~ 532 (536)
T PRK10946 513 LPLTAVGKVDKKQLRQWLAS 532 (536)
T ss_pred CCCCCCCcccHHHHHHHHHh
Confidence 99999999999999887644
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=507.82 Aligned_cols=437 Identities=19% Similarity=0.243 Sum_probs=339.6
Q ss_pred CCCCCHHHHHHhhccccccCCceEEEEEcC--CCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhH
Q 037878 466 PELSSLDGYLKHWGTHRITQKKTLFTWINE--EGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDF 543 (2280)
Q Consensus 466 ~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~--~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~ 543 (2280)
.+..|+.+.+++.+... ++.+++-+... ....++.+||.|..+++.+++..|+.. |+++++.|||+.-|++||
T Consensus 72 ~~~~T~~~~f~~~~~~~--~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~l---G~~~~~~VGIy~~N~pEW 146 (691)
T KOG1256|consen 72 DGPLTLYEGFRRSVEKS--GNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKL---GVKEDSKVGIYAFNRPEW 146 (691)
T ss_pred CCcccHHHHhhcchhcc--CCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHh---CCCCCceEEEeccCChhh
Confidence 45678999998888774 67777776642 334578999999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccc-cchhhccCC----CCCCCcc-cccccc--
Q 037878 544 VDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIG-YHSAVRVGS----WPNLPWL-HTDSWV-- 615 (2280)
Q Consensus 544 ~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~-~~~~~~~~~----~~~~~~~-~~~~~~-- 615 (2280)
+++.+||..+|++.|||-...+.+. +.+|++++.+.+++++.+ ....+.... .+.+..+ .++...
T Consensus 147 iis~~a~~~~~~v~VplYdTlg~ea-------~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~ 219 (691)
T KOG1256|consen 147 IISEMACYAYSLVNVPLYDTLGAEA-------VHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDE 219 (691)
T ss_pred HHhHHHHHhcCCEEeecccCCCHHH-------HHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchh
Confidence 9999999999999999999998888 889999999999999843 222221110 1111110 011000
Q ss_pred ---------------cccccccccccccc-CCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH------cCC
Q 037878 616 ---------------KNSKNLLAENVVCF-TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR------YKS 673 (2280)
Q Consensus 616 ---------------~~~~~~~~~~~~~~-~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~------~~~ 673 (2280)
.+..+........+ .++.|+|.|.|+|||||||+|||||+||+|+++.+...... ...
T Consensus 220 ~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~ 299 (691)
T KOG1256|consen 220 LKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKAT 299 (691)
T ss_pred hhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhccccccc
Confidence 00011111122223 47899999999999999999999999999999866532111 122
Q ss_pred CCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccc
Q 037878 674 TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV 753 (2280)
Q Consensus 674 ~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~ 753 (2280)
..+|++++++|++|++..+.+.+.. ..|+.+.++.+ |+..+.+.+++.++|.+.++|.+++.+.+.+.......
T Consensus 300 ~~~dv~lSyLPLAHi~er~~~~~~~-~~G~~IgF~~g-----D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~s 373 (691)
T KOG1256|consen 300 VGDDVYLSYLPLAHIFERVVELYTF-YIGAKIGFARG-----DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKS 373 (691)
T ss_pred ccCceEEEeCcHHHHHHHHHHHhHh-hcccEEEEecC-----ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcc
Confidence 3479999999999999998777665 66777776654 88889999999999999999999988765443221100
Q ss_pred ------------------------cc-cC-C--------------CCccEEEEecCCCCHHHHHHHHHHhcCCCCCCccc
Q 037878 754 ------------------------RS-FD-L--------------SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM 793 (2280)
Q Consensus 754 ------------------------~~-~~-l--------------~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v 793 (2280)
.. .+ + +++|.+++|++|+++++...++.. .++++
T Consensus 374 gflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~------~g~~v 447 (691)
T KOG1256|consen 374 GFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAA------LGCRV 447 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHh------cCcee
Confidence 00 00 0 589999999999999988888765 37899
Q ss_pred ccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEc-CCCCcccCCCCCeeEEEEcCCCcccccCCC
Q 037878 794 APGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN-PETSEEIGEPGKEGEVWISSPSAGIGYWGR 872 (2280)
Q Consensus 794 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd-~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~ 872 (2280)
.++||+|||+..++.....+ ...|++|.|+|+++++++| ||.+. . +.|..|||||+|++|+.|||+|
T Consensus 448 ~eGYGlTEts~g~~~~~~~d----------~~lgsvG~p~p~~~vKL~dvpe~ny-~-a~~~~GEIcirG~~Vf~GYyK~ 515 (691)
T KOG1256|consen 448 LEGYGLTETSAGTTLTLPGD----------NVLGSVGPPVPGNEVKLVDVPEMNY-D-ADGSKGEICVRGPNVFMGYYKD 515 (691)
T ss_pred eecccccccCCceEeccCCC----------CCCCCcCCcccCceEEEechHHhCc-C-cCCCcceEEEecchhceeccCC
Confidence 99999999996655543322 2468999999999999999 44432 2 4677899999999999999999
Q ss_pred chhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCcCCceeEEEe
Q 037878 873 EELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHIRPGCCAVIG 948 (2280)
Q Consensus 873 p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~ 948 (2280)
|++|+++|+. +||+||||+|+++ +|.|.++||+|+++|+ .|++|.|..||++..+.+-|.+ .+|.+
T Consensus 516 p~~T~e~ide-------DGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~q---i~V~g 583 (691)
T KOG1256|consen 516 PEKTAEAIDE-------DGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQ---IFVLG 583 (691)
T ss_pred hHHHhhhhcc-------ccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEE---EEEEC
Confidence 9999999975 5999999999997 9999999999999999 7999999999999998776653 55655
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=539.36 Aligned_cols=480 Identities=18% Similarity=0.218 Sum_probs=352.3
Q ss_pred cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCC
Q 037878 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563 (2280)
Q Consensus 484 ~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~ 563 (2280)
.|+++|+.+.+ ++ +++||+||.++++++|+.|.++ |+++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 10 ~p~~~a~~~~~-~~---~~lTy~el~~~~~~la~~L~~~---gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~ 82 (501)
T PRK13390 10 APDRPAVIVAE-TG---EQVSYRQLDDDSAALARVLYDA---GLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHH 82 (501)
T ss_pred CCCCcEEEecC-CC---eEeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccC
Confidence 48899987642 22 5799999999999999999998 99999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCc-cccccccc---cccccccccccccCCCCCCCeEE
Q 037878 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPW-LHTDSWVK---NSKNLLAENVVCFTESQPDDLCF 639 (2280)
Q Consensus 564 ~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~a~ 639 (2280)
.+.++ +.+++++++++.++++........... ..... +....... ......... .......++.++
T Consensus 83 ~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~ 152 (501)
T PRK13390 83 LTAPE-------ADYIVGDSGARVLVASAALDGLAAKVG-ADLPLRLSFGGEIDGFGSFEAALAGA--GPRLTEQPCGAV 152 (501)
T ss_pred CCHHH-------HHHHHHhcCCcEEEEcchhhhHHHHhh-hccceEEEecCcccccccHHHHhccc--CCCCCCCcccEE
Confidence 99888 889999999999998764322111100 00000 00000000 000000000 001112235799
Q ss_pred EEeccCCCCCceEEEE--chHHHHHHH----HHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCcccc
Q 037878 640 LQFTSGSTGDAKGVMI--THGGLIHNV----KLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTF 713 (2280)
Q Consensus 640 IiyTSGSTG~PKgV~~--tH~~l~~~~----~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~ 713 (2280)
|+|||||||.||||++ +|+++.... ......+.+..+++++.++|++|++++... +..+..|+++++.+.
T Consensus 153 i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~~~--- 228 (501)
T PRK13390 153 MLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLAKR--- 228 (501)
T ss_pred EEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHH-HHHHhcCceEEEcCC---
Confidence 9999999999999995 566654422 222345678899999999999999987543 445678888887653
Q ss_pred ccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCccc
Q 037878 714 IKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM 793 (2280)
Q Consensus 714 ~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v 793 (2280)
.++..+++.++++++|++..+|+++..+.+..... ....+++++|.+++||+++++++.+.+.+.+ +..+
T Consensus 229 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~------~~~~ 298 (501)
T PRK13390 229 -FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADV---RTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL------GPIV 298 (501)
T ss_pred -cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchh---cccCChhhhheEEEcCCCCCHHHHHHHHHhc------CCce
Confidence 27899999999999999999999988776432111 1224578999999999999999999988764 4569
Q ss_pred ccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCc
Q 037878 794 APGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGRE 873 (2280)
Q Consensus 794 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p 873 (2280)
++.||+||++.++...... . ....+++|+|+++ .++|+|+++ .++++|+.|||+|+|++++.||+++|
T Consensus 299 ~~~YG~tE~~~~~~~~~~~-~--------~~~~~~~G~~~~g-~~~i~d~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~ 366 (501)
T PRK13390 299 YEYYSSTEAHGMTFIDSPD-W--------LAHPGSVGRSVLG-DLHICDDDG--NELPAGRIGTVYFERDRLPFRYLNDP 366 (501)
T ss_pred eeeecccccCceEEecchh-h--------ccCCCCcCCcccc-eEEEECCCC--CCCCCCCceEEEEecCCccccccCCh
Confidence 9999999998654332110 0 1123678999999 799999765 45589999999999999999999999
Q ss_pred hhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEecccc
Q 037878 874 ELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952 (2280)
Q Consensus 874 ~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~ 952 (2280)
+.|+++|.. .+++||+|||+|+++ ||.++|.||.||+||++|+||+|.|||++|.++|+|.+ ++|++++++
T Consensus 367 ~~t~~~~~~-----~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~---~~v~~~~~~ 438 (501)
T PRK13390 367 EKTAAAQHP-----AHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHD---VAVIGVPDP 438 (501)
T ss_pred hhhHHhhcc-----CCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeE---EEEEeccCc
Confidence 999998853 234799999999996 99999999999999999999999999999999999865 889988775
Q ss_pred ccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHH
Q 037878 953 VLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFEC 1026 (2280)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L 1026 (2280)
..+ +....++.. ..+.....++.+.+++.+..+++..+.|..++.+++||+|++||++|++|
T Consensus 439 ~~~----------e~~~~~v~~--~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L 500 (501)
T PRK13390 439 EMG----------EQVKAVIQL--VEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLL 500 (501)
T ss_pred ccC----------ceeEEEEEe--cCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhc
Confidence 432 222223222 22222222223334444444334444555566669999999999999875
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=539.80 Aligned_cols=506 Identities=18% Similarity=0.249 Sum_probs=373.0
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
++.+++++++.+. +++.++.+. .++. .+.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++|
T Consensus 11 ~~~~~l~~~~~~~--~~~~~~~~~-~~~~-~~~~Ty~el~~~~~~~a~~L~~~---g~~~~d~v~i~~~~~~~~~~~~la 83 (539)
T PRK07008 11 LISSLIAHAARHA--GDTEIVSRR-VEGD-IHRYTYRDCERRAKQLAQALAAL---GVEPGDRVGTLAWNGYRHLEAYYG 83 (539)
T ss_pred CHHHHHHHHHhhC--CCceEEEee-ccCc-ceEeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcHHHHHHHHH
Confidence 6788999988874 667666542 1222 35799999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCc-ccccc----------ccc
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPW-LHTDS----------WVK 616 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~-~~~~~----------~~~ 616 (2280)
|+++|++++|+++..+.++ +..+++.+++++++++.+....+... ..+.... +...+ ...
T Consensus 84 ~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (539)
T PRK07008 84 VSGSGAVCHTINPRLFPEQ-------IAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLC 156 (539)
T ss_pred HHhcCcEEeecccccCHHH-------HHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCccccc
Confidence 9999999999999998887 88999999999999886543322110 0011000 00000 000
Q ss_pred ccc-ccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHH--HHHHHcCCCCCcEEEEEcCchhhhhHHH
Q 037878 617 NSK-NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK--LMRKRYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 617 ~~~-~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
... ..............++++++++|||||||.||||++||++++.+.. .....++...+|+++.++|++|.+++ .
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~ 235 (539)
T PRK07008 157 YETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW-G 235 (539)
T ss_pred HHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH-H
Confidence 000 0000011112234678899999999999999999999999865432 22345778889999999999998775 4
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
.++.++..|+++++.++ . .++..+++.++++++|++.++|+++..+.+..... ..+++++|.+++||+++++
T Consensus 236 ~~~~~l~~G~~~~~~~~-~--~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-----~~~~~~l~~~~~~G~~l~~ 307 (539)
T PRK07008 236 LPYSAPLTGAKLVLPGP-D--LDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA-----GLRFSTLRRTVIGGSACPP 307 (539)
T ss_pred HHHHHHhcCceEEEecC-C--cCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc-----CCCcccceEEEEcCCCCCH
Confidence 45778889999888654 2 38899999999999999999999998887654332 2467899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCC-ceeeccccCCCCCceEEEEcCCCCcccCCC
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQG-RVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g-~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~ 852 (2280)
++.++|.+.+ ++.+++.||+||++..++............... ....+++|+|+|+++++|+|+++. .+...
T Consensus 308 ~~~~~~~~~~------~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~-~~~~~ 380 (539)
T PRK07008 308 AMIRTFEDEY------GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGR-ELPWD 380 (539)
T ss_pred HHHHHHHHHh------CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCC-ccCCC
Confidence 9999998764 467999999999986554322110000000000 012357899999999999997653 33222
Q ss_pred -CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHH
Q 037878 853 -GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEK 930 (2280)
Q Consensus 853 -G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~ 930 (2280)
++.|||+++|+.++.||+++|+ +.|. ++||+|||+++++ ||.++++||+||+||++|++|+|.|||+
T Consensus 381 ~~~~Gei~v~g~~~~~gy~~~~~---~~~~--------~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~ 449 (539)
T PRK07008 381 GKAFGDLQVRGPWVIDRYFRGDA---SPLV--------DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIEN 449 (539)
T ss_pred CCcceEEEEeCCccchhhcCChh---hhhc--------CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHH
Confidence 3579999999999999999983 2332 3799999999997 9999999999999999999999999999
Q ss_pred HHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEec
Q 037878 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIK 1009 (2280)
Q Consensus 931 ~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~ 1009 (2280)
+|.++|.|.+ ++|++++++..+ +...++++. .++.. ..+++.+++++++.. ++.| ..++.
T Consensus 450 ~l~~~p~v~~---~~v~~~~~~~~~----------~~~~~~v~~--~~~~~~~~~~l~~~~~~~l~~-~~~P---~~i~~ 510 (539)
T PRK07008 450 VAVAHPAVAE---AACIACAHPKWD----------ERPLLVVVK--RPGAEVTREELLAFYEGKVAK-WWIP---DDVVF 510 (539)
T ss_pred HHHhCCceeE---EEEEecCCchhc----------cceEEEEEe--CCCCccCHHHHHHHHHhhccc-ccCC---eEEEE
Confidence 9999999975 888888765322 222222222 22222 235677777777664 4444 44555
Q ss_pred CCCccCCCCcccchHHHHHHhhcCCC
Q 037878 1010 PRTMSKTTSGKIKRFECLKQFVDGTL 1035 (2280)
Q Consensus 1010 ~~~lP~t~sGKvdR~~L~~~~~~~~~ 1035 (2280)
+++||+|.+||++|++|++++.+..+
T Consensus 511 v~~lP~t~sgKi~r~~l~~~~~~~~~ 536 (539)
T PRK07008 511 VDAIPHTATGKLQKLKLREQFRDYVL 536 (539)
T ss_pred ecCCCCCCccceeHHHHHHHHHhhcc
Confidence 69999999999999999998876543
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=538.36 Aligned_cols=494 Identities=18% Similarity=0.222 Sum_probs=375.4
Q ss_pred CCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 467 ELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 467 ~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
...++.+++++++++ +|+++|+.+.+.++ ..+.+||+||.++++++|+.|.++ |+++||+|+++++|+.+++++
T Consensus 5 ~~~~l~~~~~~~a~~--~p~~~a~~~~~~~~-~~~~~ty~~l~~~v~~la~~L~~~---g~~~~~~v~i~~~n~~~~~~~ 78 (517)
T PRK08008 5 GGQHLRQMWDDLADV--YGHKTALIFESSGG-VVRRYSYLELNEEINRTANLFYSL---GIRKGDKVALHLDNCPEFIFC 78 (517)
T ss_pred ccccHHHHHHHHHHH--CCCceEEEcccCCC-ccceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHH
Confidence 345789999999877 48999998765332 247899999999999999999988 899999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC---CCCCCCcccc--------cccc
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG---SWPNLPWLHT--------DSWV 615 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~---~~~~~~~~~~--------~~~~ 615 (2280)
+|||+++|++++|+++..+.++ +..++++++++.++++.......... .......+.. ....
T Consensus 79 ~la~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (517)
T PRK08008 79 WFGLAKIGAIMVPINARLLREE-------SAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVS 151 (517)
T ss_pred HHHHHHcCeEEEEcCcccCHHH-------HHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCccccccc
Confidence 9999999999999999999887 88999999999999987644322110 0000000000 0000
Q ss_pred c--cccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH
Q 037878 616 K--NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 616 ~--~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
. .................++++++|+|||||||.||||++||+|+............+..++++++++|++|..+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 231 (517)
T PRK08008 152 SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCT 231 (517)
T ss_pred CHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHH
Confidence 0 00000000011122345689999999999999999999999999865544444456788999999999999988888
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
.++.++..|+++++.+. .++..+++.++++++|++..+|.+++.+....... .....++|.+.++ .++++
T Consensus 232 ~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~~~~l~~~~~~-~~~~~ 301 (517)
T PRK08008 232 AAMAAFSAGATFVLLEK----YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA-----NDRQHCLREVMFY-LNLSD 301 (517)
T ss_pred HHHHHHhcCcEEEEccc----cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-----ccccccceeeEEe-cCCCH
Confidence 88999999999988753 27899999999999999999999988776432111 1224567877775 48899
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCC
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G 853 (2280)
+...+|.+.+ ++++++.||+||++..++...... ....+++|.|+++++++|+|+++ ..++.|
T Consensus 302 ~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~G~~~~g~~~~i~d~~~--~~~~~g 364 (517)
T PRK08008 302 QEKDAFEERF------GVRLLTSYGMTETIVGIIGDRPGD---------KRRWPSIGRPGFCYEAEIRDDHN--RPLPAG 364 (517)
T ss_pred HHHHHHHHHh------CCeEEeeccccccccccccCCccc---------cccCCccccCCCCcEEEEECCCC--CCCCCC
Confidence 9898888864 578999999999986554322111 11246789999999999999765 345789
Q ss_pred CeeEEEEcC---CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHH
Q 037878 854 KEGEVWISS---PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVE 929 (2280)
Q Consensus 854 ~~GEL~i~G---p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE 929 (2280)
+.|||+++| +++++||+++|+.|++.|.. ++||+|||+++++ ||.++|+||+||+||++|+||+|.|||
T Consensus 365 ~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE 437 (517)
T PRK08008 365 EIGEICIKGVPGKTIFKEYYLDPKATAKVLEA-------DGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELE 437 (517)
T ss_pred CcceEEEeCCCCcchhhhHhCChHHHhhcccC-------CCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHH
Confidence 999999998 68999999999999998864 4799999999997 999999999999999999999999999
Q ss_pred HHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcceeEEEEe
Q 037878 930 KTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTVASVKLI 1008 (2280)
Q Consensus 930 ~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~lv 1008 (2280)
+++.+++.|.+ ++|++++++..+ ..+.+++.. ..+... ..+++++++++++. +++| ..++
T Consensus 438 ~~l~~~~~v~~---~~v~g~~~~~~~----------~~~~~~v~~--~~~~~~~~~~l~~~~~~~l~~-~~~P---~~~~ 498 (517)
T PRK08008 438 NIIATHPKIQD---IVVVGIKDSIRD----------EAIKAFVVL--NEGETLSEEEFFAFCEQNMAK-FKVP---SYLE 498 (517)
T ss_pred HHHHhCCceee---EEEEccCCCCCC----------ceEEEEEEE--CCCCCCCHHHHHHHHHhhccc-ccCC---cEEE
Confidence 99999999865 889988765321 223333322 333222 25666777766654 4444 4455
Q ss_pred cCCCccCCCCcccchHHH
Q 037878 1009 KPRTMSKTTSGKIKRFEC 1026 (2280)
Q Consensus 1009 ~~~~lP~t~sGKvdR~~L 1026 (2280)
.++++|+|++||++|+.|
T Consensus 499 ~v~~iP~t~~gK~~r~~l 516 (517)
T PRK08008 499 IRKDLPRNCSGKIIKKNL 516 (517)
T ss_pred EeccCCCCCccceehhhc
Confidence 568999999999999864
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=535.98 Aligned_cols=497 Identities=20% Similarity=0.256 Sum_probs=376.7
Q ss_pred CCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhH
Q 037878 464 EFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDF 543 (2280)
Q Consensus 464 ~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~ 543 (2280)
+.+...++.++++..+++. |+++|+.. ++ +++||+||.++++++|+.|.+. |+++||+|+++++|+.++
T Consensus 5 ~~~~~~~l~~~l~~~a~~~--p~~~a~~~--~~----~~~Ty~~L~~~~~~~a~~L~~~---g~~~g~~V~i~~~n~~~~ 73 (540)
T PRK06164 5 AAPRADTLASLLDAHARAR--PDAVALID--ED----RPLSRAELRALVDRLAAWLAAQ---GVRRGDRVAVWLPNCIEW 73 (540)
T ss_pred cccCCCCHHHHHHHHHHhC--CCCeEEec--CC----CcccHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCcHHH
Confidence 3556678999999888774 88999872 11 5899999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch-----hhccCC---CCCCCcc-ccccc
Q 037878 544 VDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS-----AVRVGS---WPNLPWL-HTDSW 614 (2280)
Q Consensus 544 ~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~-----~~~~~~---~~~~~~~-~~~~~ 614 (2280)
+++++||+++|++++|+++..+.++ +.++++++++++++++.+... .+.... .+....+ ..+..
T Consensus 74 ~~~~la~~~~G~~~v~l~~~~~~~~-------l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (540)
T PRK06164 74 VVLFLACARLGATVIAVNTRYRSHE-------VAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDA 146 (540)
T ss_pred HHHHHHHHHhCcEEEecCCCCCcHH-------HHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccC
Confidence 9999999999999999999998887 889999999999998765321 000000 0011100 00000
Q ss_pred ccccc--------ccc--c--c--cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEE
Q 037878 615 VKNSK--------NLL--A--E--NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLV 680 (2280)
Q Consensus 615 ~~~~~--------~~~--~--~--~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l 680 (2280)
..... ... . . .........++++++++|||||||+||||+++|+++.+.+......+++..+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l 226 (540)
T PRK06164 147 ADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLL 226 (540)
T ss_pred cccCCCCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEE
Confidence 00000 000 0 0 00001123468999999999999999999999999999999888899999999999
Q ss_pred EEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCC
Q 037878 681 SWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSS 760 (2280)
Q Consensus 681 ~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~ 760 (2280)
+++|++|.+++. .++.++..|+++++.+. .++..+++.++++++|++..+|.++..+.+.. . ...++++
T Consensus 227 ~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~-----~~~~~~~ 295 (540)
T PRK06164 227 AALPFCGVFGFS-TLLGALAGGAPLVCEPV----FDAARTARALRRHRVTHTFGNDEMLRRILDTA-G-----ERADFPS 295 (540)
T ss_pred EcCCchhHHHHH-HHHHHHhcCceEEecCC----CCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-c-----ccCCCcc
Confidence 999999999984 68899999999988653 37899999999999999999999998887651 1 1256889
Q ss_pred ccEEEEec-CCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCC-CCceE
Q 037878 761 MKFLMVAA-EPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQND-PDVDI 838 (2280)
Q Consensus 761 Lr~l~~gG-e~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~-pg~~v 838 (2280)
+|.+..+| .+...++.+++.+. ++++++.||+||++.+++....... .......+|.|. +++++
T Consensus 296 l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~YG~tE~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~ 361 (540)
T PRK06164 296 ARLFGFASFAPALGELAALARAR-------GVPLTGLYGSSEVQALVALQPATDP-------VSVRIEGGGRPASPEARV 361 (540)
T ss_pred eeeeeeccCCcchHHHHHHHhhc-------CCceecceeeccccceeeccCCCCC-------CcceeccCccccCCCeEE
Confidence 99887776 45555555554432 5679999999999876654322111 012234456665 89999
Q ss_pred EEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEE
Q 037878 839 RIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLII 917 (2280)
Q Consensus 839 ~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IK 917 (2280)
+|+|++++. .++.|+.|||||+|++++.||+++|+.|++.|.. ++||+|||+|+++ ||.++|.||.||+||
T Consensus 362 ~i~d~~~~~-~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~~~~~TGDl~~~~~~g~l~~~GR~~~~i~ 433 (540)
T PRK06164 362 RARDPQDGA-LLPDGESGEIEIRAPSLMRGYLDNPDATARALTD-------DGYFRTGDLGYTRGDGQFVYQTRMGDSLR 433 (540)
T ss_pred EEecCCCCc-CCCCCCeeEEEEecccccccccCCchhhhhcccC-------CCceecCCeEEEcCCceEEEEeecCCeEE
Confidence 999987654 4579999999999999999999999999998864 4899999999997 999999999999999
Q ss_pred ECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHH
Q 037878 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVE 996 (2280)
Q Consensus 918 i~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~ 996 (2280)
++|++|+|.|||++|.++++|.+ ++|+++++. + ......++ ...++. ...+++.+.+++++++
T Consensus 434 ~~G~~i~p~eIE~~l~~~~~v~~---~~v~~~~~~----------~-~~~~~~~v--v~~~~~~~~~~~l~~~~~~~l~~ 497 (540)
T PRK06164 434 LGGFLVNPAEIEHALEALPGVAA---AQVVGATRD----------G-KTVPVAFV--IPTDGASPDEAGLMAACREALAG 497 (540)
T ss_pred ECCEEcCHHHHHHHHHhCCCcee---EEEEecCCC----------C-ceeEEEEE--EeCCCCCCCHHHHHHHHHhhccc
Confidence 99999999999999999999875 777776531 1 11222222 222222 2235677777777664
Q ss_pred hcCcceeEEEEecCCCccCCCCc---ccchHHHHHHhh
Q 037878 997 EHGVTVASVKLIKPRTMSKTTSG---KIKRFECLKQFV 1031 (2280)
Q Consensus 997 ~~~~~~~~~~lv~~~~lP~t~sG---KvdR~~L~~~~~ 1031 (2280)
+++|. .++.++++|+|++| |++|++|++++.
T Consensus 498 -~~~P~---~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~ 531 (540)
T PRK06164 498 -FKVPA---RVQVVEAFPVTESANGAKIQKHRLREMAQ 531 (540)
T ss_pred -CcCCc---EEEEecCCCCCCCCccccccHHHHHHHHH
Confidence 44453 34555999999999 999999988754
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=505.94 Aligned_cols=501 Identities=21% Similarity=0.257 Sum_probs=398.7
Q ss_pred cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCC
Q 037878 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563 (2280)
Q Consensus 484 ~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~ 563 (2280)
-++.+++.+.+.++.....+||.||.+++.++|..|... |+++||+|++++|+.+|+++++|||.++|++..++...
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~---g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~ 154 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKC---GLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAG 154 (626)
T ss_pred CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhc---CCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeecc
Confidence 368888888866655545599999999999999999976 99999999999999999999999999999999999988
Q ss_pred CccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-----------CCCCC--Cccc---cc----ccccccccccc
Q 037878 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-----------SWPNL--PWLH---TD----SWVKNSKNLLA 623 (2280)
Q Consensus 564 ~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-----------~~~~~--~~~~---~~----~~~~~~~~~~~ 623 (2280)
.+... +..-+++++++++++.+......+.. ..+.. .... .. +..........
T Consensus 155 fs~~~-------l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a 227 (626)
T KOG1175|consen 155 FSAKE-------LLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKA 227 (626)
T ss_pred CCHHH-------HHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhc
Confidence 88776 77888999999999986543321111 00000 0000 00 00000000111
Q ss_pred ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHH-HHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHcc
Q 037878 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGG-LIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGG 702 (2280)
Q Consensus 624 ~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~-l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G 702 (2280)
....+....+.+|+.+|+|||||||.|||+.+++.+ ++..+......++..++|++++...+.++++-+..++.+|++|
T Consensus 228 ~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~G 307 (626)
T KOG1175|consen 228 SPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNG 307 (626)
T ss_pred CCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcC
Confidence 122235567789999999999999999999999888 5566666677789999999999999999999988889999999
Q ss_pred ceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHH
Q 037878 703 STAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVEL 782 (2280)
Q Consensus 703 ~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~ 782 (2280)
+++++++...+ +|..+++.++++++|++.+.|++++.+.+...... ..+++++||.+.+.|||+.++..++|.+.
T Consensus 308 a~~vl~~g~p~--~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~---~~~~~~sLk~~~S~Gepi~~~~~ew~~~~ 382 (626)
T KOG1175|consen 308 ATVVLYEGPPF--DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDV---TSYSLKSLRTCGSVGEPINPEAWEWWKRV 382 (626)
T ss_pred cEEEEEcCCCC--ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccc---cccccceEEEEeecCccCCcchHHHHHHh
Confidence 99999988776 99999999999999999999999998765433322 23555789999999999999999999988
Q ss_pred hcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcC
Q 037878 783 TRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS 862 (2280)
Q Consensus 783 ~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~G 862 (2280)
++ . ..|.+.||.||++..+........ ...+|+.+.|.+|+.+.|+|+++. .+.+.++.|||++..
T Consensus 383 ~~---~--~pv~e~~~qtEtG~~~i~~~~g~~--------p~~pg~~~~p~~g~~v~i~de~g~-~~~~~~~~G~l~~~~ 448 (626)
T KOG1175|consen 383 TG---L--DPIYETYGQTETGGICITPKPGKL--------PIKPGSAGKPFPGYDVQILDENGN-ELPPSTGNGELRLKP 448 (626)
T ss_pred cC---c--cchhhceeeeccCceeeeccCCCC--------CcCccccCCCCCCcceEEECCCCC-CcCCCCceeEEEEeC
Confidence 63 1 269999999999987765432221 234688999999999999999653 443333899999987
Q ss_pred C---CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 863 P---SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 863 p---~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
+ +.+++||||++.-..++.. +-.|+|.|||.+++| ||+++++||.||+|+++|+|+.+.|||+++.+||.|
T Consensus 449 ~~P~~~~r~~~~n~erf~~~yf~-----k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~V 523 (626)
T KOG1175|consen 449 PWPPGMFRTLWGNHERFRAAYFK-----KFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAV 523 (626)
T ss_pred CCCccccccccCCHHHhhhhhcc-----cCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcch
Confidence 3 7899999999844444332 234899999999998 999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCC
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTS 1018 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~s 1018 (2280)
.+ +|||+.+++..++ ++++++.+.++....++|.++|+.+++........|..++.++.||+|.|
T Consensus 524 aE---sAvVg~p~~~~ge------------~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrS 588 (626)
T KOG1175|consen 524 AE---SAVVGSPDPIKGE------------VVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRS 588 (626)
T ss_pred hh---eeeecCCCCCCCe------------EEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCcccc
Confidence 86 9999999986432 23333445667777789999999999988877788888888899999999
Q ss_pred cccchHHHHHHhhcC
Q 037878 1019 GKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1019 GKvdR~~L~~~~~~~ 1033 (2280)
||+-|+.|++....+
T Consensus 589 GKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 589 GKIMRRALRKIASGK 603 (626)
T ss_pred chhHHHHHHHHhccC
Confidence 999999999886544
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=532.22 Aligned_cols=500 Identities=19% Similarity=0.252 Sum_probs=385.5
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
+++.++|++++.+ .|+++++...+ +.+||+||.++++++|..|.++ |+++||+|+++++|+.+++++++
T Consensus 2 ~~~~~~l~~~a~~--~p~~~~~~~~~------~~~t~~~l~~~~~~~a~~l~~~---g~~~~~~v~~~~~~~~~~~~~~~ 70 (503)
T PRK04813 2 MDIIETIEEFAQT--QPDFPAYDYLG------EKLTYGQLKEDSDALAAFIDSL---KLPDKSPIIVFGHMSPEMLATFL 70 (503)
T ss_pred chHHHHHHHHHHh--CCCceEEEeCC------cEEeHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCCHHHHHHHH
Confidence 3567888888876 48898876432 4799999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+++|++++|+++.++.++ +..+++.+++++++++....... .....+..++...... .......
T Consensus 71 a~~~~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~ 136 (503)
T PRK04813 71 GAVKAGHAYIPVDVSSPAER-------IEMIIEVAKPSLIIATEELPLEI-----LGIPVITLDELKDIFA--TGNPYDF 136 (503)
T ss_pred HHHHcCCEEecCCCCChHHH-------HHHHHHhcCCCEEEecccccccc-----cCCcEEehHHhhhhhh--ccccccc
Confidence 99999999999999998887 88899999999999976542110 1111111111111000 0001111
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++++++++|||||||.||||.++|+++...+.+....+....+++++.+.|++|+.++ ..++.++..|+++++.
T Consensus 137 ~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~ 215 (503)
T PRK04813 137 DHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVAL 215 (503)
T ss_pred cccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEc
Confidence 223467899999999999999999999999999998888888899999999999999999987 5677899999999887
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
+. .+..++..+++.++++++|++..+|++++.+....... ..+++++|.++++|+++++++.+++.+.+
T Consensus 216 ~~-~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-----~~~~~~l~~i~~~G~~l~~~~~~~~~~~~----- 284 (503)
T PRK04813 216 PK-DMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN-----EEHLPNLTHFLFCGEELPHKTAKKLLERF----- 284 (503)
T ss_pred Ch-hhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC-----cccCCCceEEEEecCcCCHHHHHHHHHHC-----
Confidence 64 33458999999999999999999999887765432211 24678999999999999999999999875
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
+++.+++.||+||++..++........ .......++|.|.++++++|+|+++ ..++.|+.|||+++|++++.|
T Consensus 285 ~~~~~~~~yG~tE~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~i~d~~~--~~~~~g~~Gel~v~~~~~~~g 357 (503)
T PRK04813 285 PSATIYNTYGPTEATVAVTSIEITDEM-----LDQYKRLPIGYAKPDSPLLIIDEEG--TKLPDGEQGEIVISGPSVSKG 357 (503)
T ss_pred CCceEEeCcccchheeEEEEEEecccc-----cccCCCCcccccCCCCEEEEECCCC--CCCCCCCceEEEEeccccccc
Confidence 467899999999997654432211110 0112235689999999999999765 344789999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEe
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~ 948 (2280)
|+++++.|.+.|..+ .+.+||+|||++++.||.+++.||.||+||++|++|+|.|||+++.++|+|.+ ++|++
T Consensus 358 y~~~~~~~~~~~~~~----~g~~~~~tGD~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~---~~v~~ 430 (503)
T PRK04813 358 YLNNPEKTAEAFFTF----DGQPAYHTGDAGYLEDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVES---AVVVP 430 (503)
T ss_pred cCCChhHhHHhhccC----CCceeEECCceEEeeCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcce---EEEEE
Confidence 999999999888542 45679999999999999999999999999999999999999999999999865 77777
Q ss_pred ccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
.+++.. .+...+++. ..++. ....++.+.+++.+.+.++....|..++.++++|+|+|||++|++|+
T Consensus 431 ~~~~~~----------~~~~~~~v~--~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~ 498 (503)
T PRK04813 431 YNKDHK----------VQYLIAYVV--PKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALI 498 (503)
T ss_pred eeCCCC----------ccEEEEEEE--eccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHH
Confidence 544311 122222222 22221 11223444555555554444445556666799999999999999998
Q ss_pred HHhh
Q 037878 1028 KQFV 1031 (2280)
Q Consensus 1028 ~~~~ 1031 (2280)
+++.
T Consensus 499 ~~~~ 502 (503)
T PRK04813 499 EEVN 502 (503)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=534.22 Aligned_cols=499 Identities=22% Similarity=0.346 Sum_probs=388.6
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++.++.. |+++|+.+.+ +.+||+||+++++++|+.|.+. |+++|++|+++++|+.++++++
T Consensus 5 ~~~l~~~l~~~~~~~--p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~---g~~~~~~V~l~~~~~~~~~~~~ 73 (521)
T PRK06187 5 PLTIGRILRHGARKH--PDKEAVYFDG------RRTTYAELDERVNRLANALRAL---GVKKGDRVAVFDWNSHEYLEAY 73 (521)
T ss_pred cCCHHHHHHHHHHHC--CCceEEEeCC------ceEcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHH
Confidence 457889998888874 7899987654 3599999999999999999988 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-cccccccc--------c
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTDSWV--------K 616 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~~~~--------~ 616 (2280)
|||+++|++++|+++..+.++ +..+++.++++.++++......+... ..+... .+..++.. .
T Consensus 74 la~~~~G~~~v~~~~~~~~~~-------~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (521)
T PRK06187 74 FAVPKIGAVLHPINIRLKPEE-------IAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVG 146 (521)
T ss_pred HHHHHcCeEEEecccCCCHHH-------HHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccc
Confidence 999999999999999998887 88999999999999987654332211 011110 00000000 0
Q ss_pred ccccccc--ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHH
Q 037878 617 NSKNLLA--ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 617 ~~~~~~~--~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
...+... ..........++++++++|||||||.||+|.+||+++.+........+++..++++++.+|++|..++...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 226 (521)
T PRK06187 147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLP 226 (521)
T ss_pred cHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHH
Confidence 0000000 01111234567899999999999999999999999999988888888999999999999999999988554
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHH
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQT 774 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~ 774 (2280)
+. ++..|+++++.+. + ++..+++.++++++|++.++|+++..+.+..... ..+++++|.+++|||+++++
T Consensus 227 ~~-~l~~G~~~v~~~~--~--~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-----~~~~~~l~~v~~~Ge~l~~~ 296 (521)
T PRK06187 227 YL-ALMAGAKQVIPRR--F--DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-----FVDFSSLRLVIYGGAALPPA 296 (521)
T ss_pred HH-HHHhCCEEEecCC--C--CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-----ccCcchhhEEEEcCcCCCHH
Confidence 44 8999999988764 2 8999999999999999999999999887654432 25678999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCC--
Q 037878 775 TVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP-- 852 (2280)
Q Consensus 775 l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~-- 852 (2280)
+.+.|.+.+ +++++|.||+||++.+++......... . .....+++|.|+++++++|+|+++. .++.
T Consensus 297 ~~~~~~~~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~--~--~~~~~~~~G~~~~~~~~~i~~~~~~--~~~~~~ 364 (521)
T PRK06187 297 LLREFKEKF------GIDLVQGYGMTETSPVVSVLPPEDQLP--G--QWTKRRSAGRPLPGVEARIVDDDGD--ELPPDG 364 (521)
T ss_pred HHHHHHHHh------CcchheeeccCccCcccccCCcccccc--c--ccccCCccccccCCeEEEEECCCCC--CCCCCC
Confidence 999999874 567999999999987655432211100 0 0113467899999999999998763 4467
Q ss_pred CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 853 G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
|+.|||+++|+.++.||+++++.+.+.|.+ +||+|||+++++ ||.+++.||.||+||++|++|+|.|||++
T Consensus 365 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~--------~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~ 436 (521)
T PRK06187 365 GEVGEIIVRGPWLMQGYWNRPEATAETIDG--------GWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDA 436 (521)
T ss_pred CCeeEEEEECcchhhhhcCCHHHHHHHhhC--------CceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHH
Confidence 999999999999999999999999988853 599999999996 99999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecC
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKP 1010 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~ 1010 (2280)
|.++++|.+ ++|++.+++..+ +... ++++..++. ....++.+.+++++.. + ..|..++.+
T Consensus 437 l~~~~~v~~---~~v~~~~~~~~~----------~~~~--~~v~~~~~~~~~~~~l~~~l~~~l~~-~---~~p~~i~~v 497 (521)
T PRK06187 437 LYGHPAVAE---VAVIGVPDEKWG----------ERPV--AVVVLKPGATLDAKELRAFLRGRLAK-F---KLPKRIAFV 497 (521)
T ss_pred HHhCCCceE---EEEEeccCCCcC----------ceEE--EEEEECCCCCCCHHHHHHHHHHhccC-C---CCceEEEEc
Confidence 999999865 888876654321 2222 222233332 2234556666655543 3 344555666
Q ss_pred CCccCCCCcccchHHHHHHhhcC
Q 037878 1011 RTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1011 ~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
+++|+|++||++|++|+++|.++
T Consensus 498 ~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 498 DELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred cCCCCCCCCCeeHHHHHHHHhcC
Confidence 99999999999999999998765
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=533.35 Aligned_cols=494 Identities=20% Similarity=0.253 Sum_probs=378.7
Q ss_pred HHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHH
Q 037878 471 LDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGC 550 (2280)
Q Consensus 471 l~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~ 550 (2280)
+.++++..+.+ +|+++|+.+.+ +.+||+||.++++++|+.|++. |+++||+|+++++|+.++++++|||
T Consensus 2 ~~~~~~~~~~~--~p~~~a~~~~~------~~~ty~~l~~~v~~~a~~l~~~---g~~~~~~V~i~~~n~~~~~~~~lA~ 70 (515)
T TIGR03098 2 LHHLLEDAAAR--LPDATALVHHD------RTLTYAALSERVLALASGLRGL---GLARGERVAIYLDKRLETVTAMFGA 70 (515)
T ss_pred HHHHHHHHHHH--CCCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 56778887776 48899887643 4799999999999999999988 8999999999999999999999999
Q ss_pred HHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-ccccccccc---------cc
Q 037878 551 MRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTDSWVK---------NS 618 (2280)
Q Consensus 551 l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~~~~~---------~~ 618 (2280)
+++|++++|+++..+.++ +..+++++++++++++......+... ..+... .+...+... ..
T Consensus 71 ~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (515)
T TIGR03098 71 ALAGGVFVPINPLLKAEQ-------VAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSW 143 (515)
T ss_pred HhcCEEEEeCCCCCCHHH-------HHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccH
Confidence 999999999999998877 88999999999999976543322110 000000 000010000 00
Q ss_pred cccc-cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHH
Q 037878 619 KNLL-AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFT 697 (2280)
Q Consensus 619 ~~~~-~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~ 697 (2280)
.... ............+++++|+|||||||.||||++||+++...+......+.+..+|++++++|++|++++. .++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~ 222 (515)
T TIGR03098 144 PKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFN-QLTT 222 (515)
T ss_pred HHhhccccccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHH-HHHH
Confidence 0000 0000112233567999999999999999999999999999888888888889999999999999999974 6889
Q ss_pred HHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHH
Q 037878 698 AMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVK 777 (2280)
Q Consensus 698 ~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~ 777 (2280)
++..|+++++.+. .++..+.+.++++++|++.++|+++..+.+... ...+++++|.+++||+++++++.+
T Consensus 223 ~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------~~~~~~~l~~~~~~g~~l~~~~~~ 292 (515)
T TIGR03098 223 AFYVGATVVLHDY----LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW------PESAAPSLRYLTNSGGAMPRATLS 292 (515)
T ss_pred HHHcCCEEEEcCC----CCHHHHHHHHHHcCCceEecChHHHHHHHhccc------CCCCccceEEEEecCCcCCHHHHH
Confidence 9999999988753 279999999999999999999999887764211 113578999999999999999999
Q ss_pred HHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeE
Q 037878 778 RFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857 (2280)
Q Consensus 778 ~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GE 857 (2280)
++.+.+ ++..+++.||+||++..+...... . ....+++|+|+|+++++|+|+++ ..++.|+.||
T Consensus 293 ~~~~~~-----~~~~~~~~YG~tE~~~~~~~~~~~--~-------~~~~~~vG~~~~~~~~~i~~~~~--~~~~~~~~Ge 356 (515)
T TIGR03098 293 RLRSFL-----PNARLFLMYGLTEAFRSTYLPPEE--V-------DRRPDSIGKAIPNAEVLVLREDG--SECAPGEEGE 356 (515)
T ss_pred HHHHHC-----CCCeEeeeeccccccceEeccccc--c-------cCCCCCcceecCCCEEEEECCCC--CCCCCCCceE
Confidence 998875 467899999999987544332110 0 11246799999999999999764 3346899999
Q ss_pred EEEcCCCcccccCCCchhhHHHHhhhcc----CCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHH
Q 037878 858 VWISSPSAGIGYWGREELSQITFRNELQ----NNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTV 932 (2280)
Q Consensus 858 L~i~Gp~v~~GY~~~p~~t~~~f~~~~~----~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L 932 (2280)
|+++|+.++.||+++++.|++.|.+.+. ...+.+||+|||+|+++ ||.+++.||+||+||++|++|+|.|||++|
T Consensus 357 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l 436 (515)
T TIGR03098 357 LVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVA 436 (515)
T ss_pred EEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHH
Confidence 9999999999999999999999875321 11235799999999996 999999999999999999999999999999
Q ss_pred HhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCC
Q 037878 933 ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011 (2280)
Q Consensus 933 ~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~ 1011 (2280)
.++|.|.+ |+|++++++..+ +...+++. ...+. ....++.+.+++++.+ ++.| ..++.++
T Consensus 437 ~~~~~v~~---~~v~~~~~~~~g----------~~~~~~~~--~~~~~~~~~~~l~~~l~~~l~~-~~~p---~~i~~v~ 497 (515)
T TIGR03098 437 YATGLVAE---AVAFGVPDPTLG----------QAIVLVVT--PPGGEELDRAALLAECRARLPN-YMVP---ALIHVRQ 497 (515)
T ss_pred hcCCCeeE---EEEEeccCcccC----------ceEEEEEE--eCCCCCCCHHHHHHHHHhhCcc-ccCC---CEEEEec
Confidence 99999865 889988776432 22222222 12222 2224566666666654 3434 4455568
Q ss_pred CccCCCCcccchHHHHH
Q 037878 1012 TMSKTTSGKIKRFECLK 1028 (2280)
Q Consensus 1012 ~lP~t~sGKvdR~~L~~ 1028 (2280)
+||+|.+||++|++|++
T Consensus 498 ~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 498 ALPRNANGKIDRKALAA 514 (515)
T ss_pred cCCCCCCCCCcHHHhcc
Confidence 99999999999998753
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-50 Score=527.38 Aligned_cols=454 Identities=22% Similarity=0.329 Sum_probs=358.2
Q ss_pred cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCC
Q 037878 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563 (2280)
Q Consensus 484 ~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~ 563 (2280)
.++++|+...+ +++||+||.++++++|..|+ ++|+|+++++|+++++++++||+++|++++|+++.
T Consensus 13 ~~~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~--------~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~ 78 (471)
T PRK07787 13 ADIADAVRIGG------RVLSRSDLAGAATAVAERVA--------GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPD 78 (471)
T ss_pred cCCceEEEeCC------cEEEHHHHHHHHHHHHHHhc--------cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCC
Confidence 47889887632 58999999999999999984 35999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccCCCCCCCeEEEEec
Q 037878 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFT 643 (2280)
Q Consensus 564 ~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyT 643 (2280)
.+.++ +..++++++++.++++..... ...+...... .... ........++|+++|+||
T Consensus 79 ~~~~~-------l~~~l~~~~~~~il~~~~~~~-------~~~~~~~~~~---~~~~-----~~~~~~~~~~~~a~i~~T 136 (471)
T PRK07787 79 SGVAE-------RRHILADSGAQAWLGPAPDDP-------AGLPHVPVRL---HARS-----WHRYPEPDPDAPALIVYT 136 (471)
T ss_pred CChHH-------HHHHHHhcCCCEEEecCCccc-------ccccceeeec---cccc-----cccCCCCCCCceEEEEEC
Confidence 98887 889999999999999753110 0111111000 0000 001123467899999999
Q ss_pred cCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHH
Q 037878 644 SGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLET 723 (2280)
Q Consensus 644 SGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~ 723 (2280)
|||||.||||+++|+++..++......++..+++++++.+|++|.++++..++.++..|+++++.+. .++..+++.
T Consensus 137 SGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~ 212 (471)
T PRK07787 137 SGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR----PTPEAYAQA 212 (471)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCC----CCHHHHHHH
Confidence 9999999999999999999998888888999999999999999999998899999999999987653 389999999
Q ss_pred HhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccc
Q 037878 724 MSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENC 803 (2280)
Q Consensus 724 i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~ 803 (2280)
++ +++|++..+|.++..+.+.... ..+++++|.+++||+++++++.++|.+.+ +..++|.||+||++
T Consensus 213 i~-~~~t~~~~~P~~~~~l~~~~~~------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~------~~~~~~~YG~tE~~ 279 (471)
T PRK07787 213 LS-EGGTLYFGVPTVWSRIAADPEA------ARALRGARLLVSGSAALPVPVFDRLAALT------GHRPVERYGMTETL 279 (471)
T ss_pred Hh-hCceEEEcchHHHHHHHhCccc------cccccceeEEEECCCCCCHHHHHHHHHHc------CCCeecccCccccC
Confidence 99 9999999999998887653211 13578899999999999999999998764 46799999999998
Q ss_pred cceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCC-eeEEEEcCCCcccccCCCchhhHHHHhh
Q 037878 804 VFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK-EGEVWISSPSAGIGYWGREELSQITFRN 882 (2280)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~-~GEL~i~Gp~v~~GY~~~p~~t~~~f~~ 882 (2280)
..++.... .....+++|+|+++++++|+|+++. .+.+.|+ +|||+++|++++.||+++|+.|++.|..
T Consensus 280 ~~~~~~~~----------~~~~~~~vG~~~~g~~~~i~d~~~~-~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~ 348 (471)
T PRK07787 280 ITLSTRAD----------GERRPGWVGLPLAGVETRLVDEDGG-PVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTA 348 (471)
T ss_pred cceecCCC----------CcccCCcccccCCCcEEEEECCCCC-CCCCCCCCceEEEEECcccchhhcCChhhchhcccC
Confidence 65443211 0112467899999999999998753 3322454 8999999999999999999999988853
Q ss_pred hccCCCCCceeecCcEEEEE-CCeEEEEecC-CCeEEECCeeechHHHHHHHHhccCCcCCceeEEEecccccccccccc
Q 037878 883 ELQNNRGRKYTRTGDLGRII-DGKFFITGRI-KDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960 (2280)
Q Consensus 883 ~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~-dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~ 960 (2280)
++||+|||+|+++ ||.++++||+ |+++|++|+||+|.|||++|.+++.|.+ ++|++.+++..+
T Consensus 349 -------~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~---~~v~~~~~~~~~----- 413 (471)
T PRK07787 349 -------DGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVRE---AAVVGVPDDDLG----- 413 (471)
T ss_pred -------CCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcce---EEEEcccccccC-----
Confidence 4799999999997 9999999996 8999999999999999999999998865 888887664322
Q ss_pred ccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHH
Q 037878 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLK 1028 (2280)
Q Consensus 961 ~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~ 1028 (2280)
....++++ .. ......++.+.+++++.+ ++.| ..++.+++||+|.+||+||++|++
T Consensus 414 -----~~~~a~v~--~~-~~~~~~~l~~~l~~~l~~-~~~P---~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 414 -----QRIVAYVV--GA-DDVAADELIDFVAQQLSV-HKRP---REVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred -----eEEEEEEE--eC-CCCCHHHHHHHHHhhccc-ccCC---cEEEEeccCCCCCCccccHHHhcc
Confidence 12222222 22 222335666777766664 3433 445556999999999999998754
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=531.87 Aligned_cols=500 Identities=20% Similarity=0.265 Sum_probs=384.2
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++.+++++ +|+++|+.+.+ +.+||.||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 11 ~~~~~~~~~~~~~~--~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~---gv~~~~~V~i~~~~~~~~~~~~ 79 (524)
T PRK06188 11 GATYGHLLVSALKR--YPDRPALVLGD------TRLTYGQLADRISRYIQAFEAL---GLGTGDAVALLSLNRPEVLMAI 79 (524)
T ss_pred CccHHHHHHHHHHH--CCCCeEEEECC------CcccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHH
Confidence 45788999888876 48899987532 5799999999999999999988 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccc-cchhhcc--CCCCCCC-cccccccc--cccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIG-YHSAVRV--GSWPNLP-WLHTDSWV--KNSKNL 621 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~-~~~~~~~--~~~~~~~-~~~~~~~~--~~~~~~ 621 (2280)
+||+++|++++|+++..+.++ +..+++++++..++++.. ....... ...+... .+...... ......
T Consensus 80 la~~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (524)
T PRK06188 80 GAAQLAGLRRTALHPLGSLDD-------HAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAA 152 (524)
T ss_pred HHHHHhCCEEEecccCCCHHH-------HHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHh
Confidence 999999999999999988887 788999999999998765 2111110 0011111 11111000 000000
Q ss_pred c--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHH
Q 037878 622 L--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699 (2280)
Q Consensus 622 ~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L 699 (2280)
. ...........++|+++|+|||||||.||+|+++|+++...+......+++..++++++.+|++|..++ .++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~--~~~~~l 230 (524)
T PRK06188 153 AAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGA--FFLPTL 230 (524)
T ss_pred hhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhH--HHHHHH
Confidence 0 000011122345679999999999999999999999999999988888999999999999999999886 367889
Q ss_pred HccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHH
Q 037878 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779 (2280)
Q Consensus 700 ~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~ 779 (2280)
+.|+++++.++ .+|..+++.++++++|++.++|+++..+++..... ..+++++|.+++||++++++...++
T Consensus 231 ~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-----~~~l~~lr~~~~gg~~~~~~~~~~~ 301 (524)
T PRK06188 231 LRGGTVIVLAK----FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-----TRDLSSLETVYYGASPMSPVRLAEA 301 (524)
T ss_pred HcCCEEEEcCC----CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-----CCCCcceeEEEEcCCCCCHHHHHHH
Confidence 99999998764 37999999999999999999999998887543222 2468899999999999999999988
Q ss_pred HHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEE
Q 037878 780 VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859 (2280)
Q Consensus 780 ~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~ 859 (2280)
.+.+ +..+++.||+||++..++....... +.......+++|+|+|+++++|+|+++ ..++.|+.|||+
T Consensus 302 ~~~~------~~~~~~~YG~tE~~~~~~~~~~~~~----~~~~~~~~~~~G~p~~g~~v~i~~~~~--~~~~~g~~Gel~ 369 (524)
T PRK06188 302 IERF------GPIFAQYYGQTEAPMVITYLRKRDH----DPDDPKRLTSCGRPTPGLRVALLDEDG--REVAQGEVGEIC 369 (524)
T ss_pred HHHh------CchhhheeCccccCCceeecCchhc----cccccccCCccccccCCcEEEEEcCCC--CCCCCCCeeEEE
Confidence 8764 3569999999999765543321111 000112346789999999999999874 345799999999
Q ss_pred EcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 860 i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
|+|+.++.||+++++.+.+.|. ++||+|||+++++ ||.++|+||.||+||++|++|+|.|||++|+++++|
T Consensus 370 v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v 441 (524)
T PRK06188 370 VRGPLVMDGYWNRPEETAEAFR--------DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAV 441 (524)
T ss_pred EECcchhhhhcCChHHhhhhhc--------CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCe
Confidence 9999999999999999988874 3799999999996 999999999999999999999999999999999998
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecCC-CCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCC
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDG-KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTT 1017 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~ 1017 (2280)
.+ ++|++.+++..+ +....+++. .++ .....++.+.+++.+.. ++ .|..++.+++||+|+
T Consensus 442 ~~---~~v~~~~~~~~~----------~~~~~~v~~--~~~~~~~~~~l~~~~~~~l~~-~~---~p~~i~~v~~~P~t~ 502 (524)
T PRK06188 442 AQ---VAVIGVPDEKWG----------EAVTAVVVL--RPGAAVDAAELQAHVKERKGS-VH---APKQVDFVDSLPLTA 502 (524)
T ss_pred eE---EEEEeccCCCcC----------ceEEEEEEE--CCCCCCCHHHHHHHHHHhccc-CC---CCcEEEEecCCCCCc
Confidence 65 788887664322 222233322 222 22224566666665543 33 444555668999999
Q ss_pred CcccchHHHHHHhhcCCC
Q 037878 1018 SGKIKRFECLKQFVDGTL 1035 (2280)
Q Consensus 1018 sGKvdR~~L~~~~~~~~~ 1035 (2280)
+||+||++|+++|.++.+
T Consensus 503 ~gKi~r~~L~~~~~~~~~ 520 (524)
T PRK06188 503 LGKPDKKALRARYWEGRG 520 (524)
T ss_pred cccccHHHHHHHHHhhcc
Confidence 999999999999877654
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=536.97 Aligned_cols=494 Identities=23% Similarity=0.362 Sum_probs=372.3
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.++++..+.. .|+++|+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+.++++++|
T Consensus 24 ~~~~~~~~~~a~~--~p~~~a~~~~~------~~~ty~eL~~~~~~la~~L~~~---gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 24 QPLHKYVEQMASR--YPEKKALHFLG------KDITFSVFHDKVKRFANYLQKL---GVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred ccHHHHHHHHHHH--CCCceEEEecC------eeecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCChHHHHHHH
Confidence 5788888887776 48999987642 5799999999999999999988 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC----CCCCCcccccccc---------
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS----WPNLPWLHTDSWV--------- 615 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 615 (2280)
||+++|++++|++|..+.++ +..+++.++++.+++++.......... .............
T Consensus 93 A~~~~G~~~vpi~p~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERE-------LEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYP 165 (563)
T ss_pred HHHHcCeEEeccCcccCHHH-------HHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccc
Confidence 99999999999999999887 889999999999999764332111000 0000000000000
Q ss_pred -------------ccc------ccc--ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH-HcCC
Q 037878 616 -------------KNS------KNL--LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK-RYKS 673 (2280)
Q Consensus 616 -------------~~~------~~~--~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~-~~~~ 673 (2280)
... ... ............++++++|+|||||||.||||+++|+++......... .++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 245 (563)
T PRK06710 166 FVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNC 245 (563)
T ss_pred hhhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCC
Confidence 000 000 000000111123578999999999999999999999998765433322 2343
Q ss_pred C-CCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccccc
Q 037878 674 T-SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK 752 (2280)
Q Consensus 674 ~-~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~ 752 (2280)
. .++++++++|++|.+++...++.++..|+++++.++ + ++..+++.++++++|++.++|+.+..++.....
T Consensus 246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---- 317 (563)
T PRK06710 246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK--F--DMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLL---- 317 (563)
T ss_pred CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC--C--CHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcc----
Confidence 3 456889999999999987777888999999988653 2 789999999999999999999998877643211
Q ss_pred ccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCC
Q 037878 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQN 832 (2280)
Q Consensus 753 ~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p 832 (2280)
...+++++|.+++||+++++++.+++.+.+ ++.++|.||+||++.+++...... ....+++|.|
T Consensus 318 -~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~G~~ 381 (563)
T PRK06710 318 -KEYDISSIRACISGSAPLPVEVQEKFETVT------GGKLVEGYGLTESSPVTHSNFLWE---------KRVPGSIGVP 381 (563)
T ss_pred -ccCChhhhhheeeCCCcCCHHHHHHHHHhh------CCCEecccccccCccccccCcccc---------cccCCccCCC
Confidence 124578999999999999999999988764 467999999999987544321110 1123678999
Q ss_pred CCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEec
Q 037878 833 DPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGR 911 (2280)
Q Consensus 833 ~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR 911 (2280)
.+++.++++|++++ ..++.|+.|||+++|+.+++||+++|+.|++.|. ++||+|||+++++ ||.++++||
T Consensus 382 ~~~~~~~i~~~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~~~~~GR 452 (563)
T PRK06710 382 WPDTEAMIMSLETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQ--------DGWLHTGDVGYMDEDGFFYVKDR 452 (563)
T ss_pred CCCCeEEEEECCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcc--------cCcccccceEEEcCCCcEEEeec
Confidence 99999999997655 4457999999999999999999999999988774 3799999999996 999999999
Q ss_pred CCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHH
Q 037878 912 IKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENI 990 (2280)
Q Consensus 912 ~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l 990 (2280)
+||+||++|+||+|.|||++|.++++|.+ ++|++++++..+ +....+++ ..++.. ...++.+.+
T Consensus 453 ~dd~i~~~G~~v~p~eiE~~l~~~~~v~~---~~v~~~~~~~~g----------~~~~~~v~--~~~~~~~~~~~l~~~~ 517 (563)
T PRK06710 453 KKDMIVASGFNVYPREVEEVLYEHEKVQE---VVTIGVPDPYRG----------ETVKAFVV--LKEGTECSEEELNQFA 517 (563)
T ss_pred cccEEEECCEEECHHHHHHHHHhCcceee---EEEEccccCCcC----------ceeEEEEE--ECCCCCCCHHHHHHHH
Confidence 99999999999999999999999999875 888887765322 22222222 223322 234555666
Q ss_pred HHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 991 KTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 991 ~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+++++. +++| ..+..+++||+|++||++|++|++++..
T Consensus 518 ~~~l~~-~~~P---~~~~~v~~iP~t~~GKi~r~~L~~~~~~ 555 (563)
T PRK06710 518 RKYLAA-YKVP---KVYEFRDELPKTTVGKILRRVLIEEEKR 555 (563)
T ss_pred HHhccc-ccCC---cEEEEcccCCCCccchhhHHHHHHHHhh
Confidence 655553 4444 4455569999999999999999887644
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=534.38 Aligned_cols=453 Identities=13% Similarity=0.077 Sum_probs=323.4
Q ss_pred eCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccc------hhhccC-CCCCCCcc
Q 037878 537 YVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYH------SAVRVG-SWPNLPWL 609 (2280)
Q Consensus 537 ~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~------~~~~~~-~~~~~~~~ 609 (2280)
++|++|+++++|||+++|+++||+++.++.++ +.++++++++++++++.... ..+... .......+
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~e-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i 73 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKE-------IATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAI 73 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHH-------HHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEE
Confidence 58999999999999999999999999999888 89999999999999975421 111000 00000000
Q ss_pred c------------------cccccccccccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH
Q 037878 610 H------------------TDSWVKNSKNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK 669 (2280)
Q Consensus 610 ~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~ 669 (2280)
. +.++........ ...........++|+++|+|||||||.||||++||+|++........
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~ 153 (499)
T PLN03051 74 VLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA 153 (499)
T ss_pred EEeccCcccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Confidence 0 000000000000 00000111235689999999999999999999999998877666666
Q ss_pred HcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcc
Q 037878 670 RYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749 (2280)
Q Consensus 670 ~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~ 749 (2280)
.++++++|++++.+|++|++++. .++.+++.|+++++.+.. .++..+++.++++++|++.++|+++..+.+....
T Consensus 154 ~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~---~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~- 228 (499)
T PLN03051 154 HMDIQPGDVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGA---PLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF- 228 (499)
T ss_pred hcCCCCCCEEEEccCcceeeehH-HHHHHHHcCCEEEecCCC---CCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence 67888999999999999999974 688899999999887531 2678899999999999999999999887653210
Q ss_pred cccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccc
Q 037878 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYV 829 (2280)
Q Consensus 750 ~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~v 829 (2280)
.....++++||.+++|||++++++.+++.+.. . .++.++|.||+||++..++..... . ....+++
T Consensus 229 --~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~---~~~~~~~~YG~TE~~~~~~~~~~~-~--------~~~~~~~ 293 (499)
T PLN03051 229 --AMEGLDWSKLRVFASTGEASAVDDVLWLSSVR-G---YYKPVIEYCGGTELASGYISSTLL-Q--------PQAPGAF 293 (499)
T ss_pred --ccccCCchhheEEEecCCCCCHHHHHHHHHhc-c---ccceeEeeeccccccceeeccccc-C--------CCCCccc
Confidence 01125688999999999999999988766532 1 135699999999987543322110 0 1123678
Q ss_pred cCCCCCceEEEEcCCCCcccCCCC--CeeEEEEcCCCc--ccccCCCchhhHHHHhhhc--cCCCCCceeecCcEEEEE-
Q 037878 830 DQNDPDVDIRIVNPETSEEIGEPG--KEGEVWISSPSA--GIGYWGREELSQITFRNEL--QNNRGRKYTRTGDLGRII- 902 (2280)
Q Consensus 830 G~p~pg~~v~Ivd~~~~~~~~p~G--~~GEL~i~Gp~v--~~GY~~~p~~t~~~f~~~~--~~~~~~~~yrTGDlgr~~- 902 (2280)
|+|.++++++|+|+++. .++.| ++|||+|+||.+ +.||||++ .++ .|.+.. ....+.+||||||+|+++
T Consensus 294 G~p~~~~~~~ivd~~g~--~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~~~~g~~~~~~~~~~~~~TGDlg~~d~ 369 (499)
T PLN03051 294 STASLGTRFVLLNDNGV--PYPDDQPCVGEVALAPPMLGASDRLLNAD-HDK-VYYKGMPMYGSKGMPLRRHGDIMKRTP 369 (499)
T ss_pred cCCCCCceEEEECCCCC--CCCCCCCcceEEEEecCcCCCCccccCCc-ccc-eeeecCCccccCCcceeecCCeEEECC
Confidence 99999999999997753 34677 589999999977 57999865 333 343211 111345799999999997
Q ss_pred CCeEEEEecCCCeEEECCeeechHHHHHHHHh-ccCCcCCceeEEEeccccccccccccccCCCCceEEEEEE-EecCCC
Q 037878 903 DGKFFITGRIKDLIIVAGRNVYSADVEKTVES-STEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIA-EVRDGK 980 (2280)
Q Consensus 903 dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~-~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~~ 980 (2280)
||+|+|+||+|||||++|+||+|.|||++|.+ ||+|.+ |+|++++++..+ .+.+.+++.. ...++.
T Consensus 370 dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~---aavvg~~d~~~g---------~~~~~a~v~~~v~~~~~ 437 (499)
T PLN03051 370 GGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAE---TAAVGVAPPDGG---------PELLVIFLVLGEEKKGF 437 (499)
T ss_pred CCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcce---EEEEEecCCCCC---------ceEEEEEEEcceecccc
Confidence 99999999999999999999999999999996 999976 899999886533 1223333310 122232
Q ss_pred --CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 981 --PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 981 --~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
...+++++++++++.+++.....+-.+..+++||+|++|||||++|++.+.+
T Consensus 438 ~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 491 (499)
T PLN03051 438 DQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKK 491 (499)
T ss_pred cccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHH
Confidence 2336777788777766443211122344569999999999999999887543
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=535.10 Aligned_cols=493 Identities=25% Similarity=0.347 Sum_probs=372.1
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++.+.+++ .|+++|+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 22 ~~~i~~~l~~~a~~--~p~~~a~~~~~------~~lTy~~l~~~~~~~a~~L~~~---gi~~gd~V~i~~~n~~~~~~~~ 90 (557)
T PRK07059 22 YPSLADLLEESFRQ--YADRPAFICMG------KAITYGELDELSRALAAWLQSR---GLAKGARVAIMMPNVLQYPVAI 90 (557)
T ss_pred CCCHHHHHHHHHHH--cCCCceEEEcC------ceeeHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCHHHHHHH
Confidence 45789999888876 48999987643 4799999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-CCCCCCcccc---c-----------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-SWPNLPWLHT---D----------- 612 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-~~~~~~~~~~---~----------- 612 (2280)
+||+++|++++|+++..+.++ +.+++++++++.+++++.....+... .......+.. .
T Consensus 91 la~~~~G~~~v~v~~~~~~~~-------~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (557)
T PRK07059 91 AAVLRAGYVVVNVNPLYTPRE-------LEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVN 163 (557)
T ss_pred HHHHhcCeEEeccCcccCHHH-------HHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccc
Confidence 999999999999999988877 88999999999999876543222110 0000000000 0
Q ss_pred -----------cccc-------cccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC--
Q 037878 613 -----------SWVK-------NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK-- 672 (2280)
Q Consensus 613 -----------~~~~-------~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~-- 672 (2280)
.+.. .................++++|+|+|||||||.||||+++|++++..+........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 243 (557)
T PRK07059 164 FVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPA 243 (557)
T ss_pred cccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccc
Confidence 0000 00000000011123456789999999999999999999999998876544332221
Q ss_pred --C---CCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHh
Q 037878 673 --S---TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLE 747 (2280)
Q Consensus 673 --~---~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~ 747 (2280)
. .....++..+|++|.+++....+.++..|++.++.+.. .++..+++.++++++|.+..+|.++..+.....
T Consensus 244 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~ 320 (557)
T PRK07059 244 FEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNP---RDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD 320 (557)
T ss_pred ccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCC---cCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC
Confidence 1 12457788899999998776777888888887766532 378889999999999999999999988765322
Q ss_pred cccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeec
Q 037878 748 SSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCG 827 (2280)
Q Consensus 748 ~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g 827 (2280)
. ...+++++|.++.||+++++.+.++|.+.+ ++++++.||+||++.+++...... ....+
T Consensus 321 ~-----~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~ 380 (557)
T PRK07059 321 F-----DKLDFSKLIVANGGGMAVQRPVAERWLEMT------GCPITEGYGLSETSPVATCNPVDA---------TEFSG 380 (557)
T ss_pred c-----CcCCchhheEEEeccccCCHHHHHHHHHHh------CCCeeeccccccccchhhcCCCCC---------CCcCC
Confidence 1 224678999999999999999999998864 467999999999987765432211 11236
Q ss_pred cccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeE
Q 037878 828 YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKF 906 (2280)
Q Consensus 828 ~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l 906 (2280)
++|.|+++++++|+|+++ ..+|.|+.|||+++|+.++.||+++++.|++.|.. ++||+|||+++++ ||.+
T Consensus 381 ~vG~p~~g~~v~i~d~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~~ 451 (557)
T PRK07059 381 TIGLPLPSTEVSIRDDDG--NDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTA-------DGFFRTGDVGVMDERGYT 451 (557)
T ss_pred cccCccCCcEEEEECCCC--CCCCCCCceEEEEeCCccchhhhcCHHHHhhhccc-------CCceecCcEEEEcCCCcE
Confidence 789999999999999775 34579999999999999999999999999887753 4899999999996 9999
Q ss_pred EEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHH
Q 037878 907 FITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDV 986 (2280)
Q Consensus 907 ~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l 986 (2280)
+++||+||+||++|++|+|.|||++|.++++|.+ ++|++++++..+ +...+++. ..+.....+++
T Consensus 452 ~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~---~~v~~~~~~~~g----------e~~~~~v~--~~~~~~~~~~l 516 (557)
T PRK07059 452 KIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLE---VAAVGVPDEHSG----------EAVKLFVV--KKDPALTEEDV 516 (557)
T ss_pred EEecccccceEECCEEEcHHHHHHHHHhCCceeE---EEEEecccCCCC----------eeEEEEEE--eCCCCCCHHHH
Confidence 9999999999999999999999999999999875 788887665322 22223322 22222233456
Q ss_pred HHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 987 IENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 987 ~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
.+.+++++.. + ..|..+..++++|+|.+||++|+.|+++
T Consensus 517 ~~~~~~~l~~-~---~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 517 KAFCKERLTN-Y---KRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred HHHHHHhccc-c---cCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 6666666554 3 3444555669999999999999987654
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=535.66 Aligned_cols=492 Identities=24% Similarity=0.340 Sum_probs=371.4
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHH-hcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLL-TSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~-~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
.++.+++++.+++ .|+++|+...+ +.+||+||.++++++|+.|. +. |+++||+|+++++|++++++++
T Consensus 25 ~~~~~~l~~~~~~--~~~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~~---g~~~g~~V~i~~~~~~~~~~~~ 93 (560)
T PRK08751 25 RTVAEVFATSVAK--FADRPAYHSFG------KTITYREADQLVEQFAAYLLGEL---QLKKGDRVALMMPNCLQYPIAT 93 (560)
T ss_pred CcHHHHHHHHHHh--CCCCceEEECC------ceeeHHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCHHHHHHH
Confidence 4678888887776 48899987532 57999999999999999996 46 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCccccc--c----------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLHTD--S---------- 613 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~~~--~---------- 613 (2280)
|||+++|++++|++|..+.++ +..++++++++.++++......+... ..+....+... .
T Consensus 94 lA~~~~G~~~v~l~p~~~~~~-------~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (560)
T PRK08751 94 FGVLRAGLTVVNVNPLYTPRE-------LKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALV 166 (560)
T ss_pred HHHHHhCeEEeccCccCCHHH-------HHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhh
Confidence 999999999999999998887 78899999999999876543221110 00000000000 0
Q ss_pred -------------cc-------ccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC-
Q 037878 614 -------------WV-------KNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK- 672 (2280)
Q Consensus 614 -------------~~-------~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~- 672 (2280)
.. ..................++++++|+|||||||.||||+++|+++...+......+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~ 246 (560)
T PRK08751 167 NFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAG 246 (560)
T ss_pred hhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcc
Confidence 00 000000000011122346789999999999999999999999999888776655543
Q ss_pred ---CCC-CcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhc
Q 037878 673 ---STS-KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLES 748 (2280)
Q Consensus 673 ---~~~-~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~ 748 (2280)
+.. +++++.++|++|.+++....+.++..|++.++... . .++..+++.++++++|++..+|..+..+.+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 322 (560)
T PRK08751 247 TGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISN-P--RDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG- 322 (560)
T ss_pred ccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecC-c--CCHHHHHHHHHhcceeEecChHHHHHHHHcCcC-
Confidence 223 46778889999999987666777777777666543 2 378899999999999999999999988765321
Q ss_pred ccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeecc
Q 037878 749 SKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGY 828 (2280)
Q Consensus 749 ~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~ 828 (2280)
....+++++|.+++||+++++++.++|.+.+ ++.+++.||+||++..++...... ....++
T Consensus 323 ----~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~ 383 (560)
T PRK08751 323 ----FDQIDFSSLKMTLGGGMAVQRSVAERWKQVT------GLTLVEAYGLTETSPAACINPLTL---------KEYNGS 383 (560)
T ss_pred ----cCCcchhhheeeeeCCCCCCHHHHHHHHHHh------CCeEEEeeccccCCCceecccccc---------cccCCC
Confidence 1235678999999999999999999998864 467999999999987654332110 112367
Q ss_pred ccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEE
Q 037878 829 VDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFF 907 (2280)
Q Consensus 829 vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~ 907 (2280)
+|.|+++++++|+|+++ ..++.|+.|||+|+|+.+++||+++|+.|++.|.. ++||+|||+|+++ +|.++
T Consensus 384 vG~~~~~~~v~i~d~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~ 454 (560)
T PRK08751 384 IGLPIPSTDACIKDDAG--TVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDA-------DGWLHTGDIARMDEQGFVY 454 (560)
T ss_pred cCccCCCceEEEECCCC--CCCCCCCceEEEEecCccchhhcCChhhhhhcccc-------CCCccccceEEEcCCceEE
Confidence 89999999999999765 34579999999999999999999999999887743 4899999999997 99999
Q ss_pred EEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHH
Q 037878 908 ITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVI 987 (2280)
Q Consensus 908 ~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~ 987 (2280)
++||.||+||++|++|+|.|||++|.++++|.+ |+|++++++..+ +.+.++++. .......+++.
T Consensus 455 i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~---~~v~~~~~~~~g----------e~~~~~v~~--~~~~~~~~~l~ 519 (560)
T PRK08751 455 IVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLE---VAAVGVPDEKSG----------EIVKVVIVK--KDPALTAEDVK 519 (560)
T ss_pred EEeechhheeECCEEEcHHHHHHHHHhCcCeee---eEEEecCCCCCC----------ceEEEEEEc--CCCCCCHHHHH
Confidence 999999999999999999999999999999865 788887765322 222233221 22222235666
Q ss_pred HHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 988 ENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 988 ~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
+.+++++.. ++.| ..++.+++||+|.+||++|++|++.
T Consensus 520 ~~~~~~l~~-~~~P---~~v~~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 520 AHARANLTG-YKQP---RIIEFRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred HHHHHhhhh-ccCC---eEEEEhhhCCCCccccccHHHHHHh
Confidence 777777664 4444 4455669999999999999998765
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=518.69 Aligned_cols=428 Identities=18% Similarity=0.209 Sum_probs=331.5
Q ss_pred eccHHHHHHHHHHHHHHHHhcCCCCC-CCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHH
Q 037878 502 QSTYEELDANASRIAHKLLTSRKPVI-KPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENIS 580 (2280)
Q Consensus 502 ~lTY~eL~~~a~~lA~~L~~~~~~Gv-~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il 580 (2280)
-+.|+||.++++++|+.|++. |+ ++|++|+++++|+++++++++||+++|++++|+++..+.++ +.+++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~---g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~-------~~~~~ 88 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQL---ATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQE-------WQQVL 88 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHh---cCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHH-------HHHHH
Confidence 357999999999999999998 77 57999999999999999999999999999999999999888 88999
Q ss_pred hhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHH
Q 037878 581 KSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL 660 (2280)
Q Consensus 581 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l 660 (2280)
+++++++++++.+..... .... .. ......++++++++|||||||.||||++||+++
T Consensus 89 ~~~~~~~~i~~~~~~~~~------------~~~~--------~~---~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l 145 (452)
T PRK07445 89 NLVQPDQIWGLDQLKLSH------------PPPL--------PS---QGILPNLETGWIMIPTGGSSGQIRFAIHTWETL 145 (452)
T ss_pred HhcCCCEEEecCcccccc------------CCCC--------Cc---cccCCCCCCcEEEEeCCCCCCCCcEEEechHHH
Confidence 999999999865422100 0000 00 011235689999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHH
Q 037878 661 IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE 740 (2280)
Q Consensus 661 ~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~ 740 (2280)
.+.+......++..+ ++.++++|++|.+|+. .++.++..|+++++.+...+ +.. .....++++|++..+|++++
T Consensus 146 ~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~--~~~--~~~~~~~~~t~~~~vP~~l~ 219 (452)
T PRK07445 146 TASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRL--KSG--QELPPNPSDFFLSLVPTQLQ 219 (452)
T ss_pred HHHHHHHHHHhcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhc--cch--hhhhhhcCceEEEehHHHHH
Confidence 988888777777655 4678899999999984 67788999999988753222 211 23334788899999999998
Q ss_pred HHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecC
Q 037878 741 LMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDW 820 (2280)
Q Consensus 741 ~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~ 820 (2280)
.+.+. . ..+++++|.+++||+++++++.+++.+. ++.++|.||+||++..++..... ..
T Consensus 220 ~l~~~---~-----~~~l~~l~~i~~gG~~l~~~~~~~~~~~-------~~~l~~~YG~TE~~~~~~~~~~~-~~----- 278 (452)
T PRK07445 220 RLLQL---R-----PQWLAQFRTILLGGAPAWPSLLEQARQL-------QLRLAPTYGMTETASQIATLKPD-DF----- 278 (452)
T ss_pred HHHhh---C-----hhhhhcceEEEECCccCCHHHHHHHHhc-------CCeEecCcchhhhcccccccCch-hh-----
Confidence 87652 1 1347899999999999999999887642 46799999999987554322111 00
Q ss_pred CCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEE
Q 037878 821 QGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900 (2280)
Q Consensus 821 ~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr 900 (2280)
....+++|+|+|+++++|+ .|+.|||+|+||+++.||++++. ..++||+|||+|+
T Consensus 279 --~~~~~~~G~~~p~~~v~i~----------~g~~Gel~v~g~~~~~gY~~~~~-------------~~~g~~~TGDl~~ 333 (452)
T PRK07445 279 --LAGNNSSGQVLPHAQITIP----------ANQTGNITIQAQSLALGYYPQIL-------------DSQGIFETDDLGY 333 (452)
T ss_pred --ccCCCcCCccCCCCeEEEc----------CCCcceEEEeCCccchhhcCCcc-------------CCCCEEECCCEEE
Confidence 1123568999999999987 35689999999999999997542 1248999999999
Q ss_pred EE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCC
Q 037878 901 II-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDG 979 (2280)
Q Consensus 901 ~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~ 979 (2280)
++ ||+++|.||+||+||++|+||+|.|||++|.+||+|.+ |+|++++++..+ +.+.++++. .++
T Consensus 334 ~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~---a~V~g~~~~~~g----------~~~~a~vv~--~~~ 398 (452)
T PRK07445 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQD---VCVLGLPDPHWG----------EVVTAIYVP--KDP 398 (452)
T ss_pred EcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcce---EEEEeccCcCCC----------cEEEEEEEe--CCC
Confidence 96 99999999999999999999999999999999999975 899998876443 222333322 222
Q ss_pred CCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 980 KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 980 ~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
....+++.+.++++++. +++ |..++.+++||+|++||++|++|++++.+.
T Consensus 399 ~~~~~~l~~~~~~~L~~-~~~---P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 448 (452)
T PRK07445 399 SISLEELKTAIKDQLSP-FKQ---PKHWIPVPQLPRNPQGKINRQQLQQIAVQR 448 (452)
T ss_pred CCCHHHHHHHHHHhCCc-ccC---CeEEEEecCCCCCCCcccCHHHHHHHHHHh
Confidence 22235666666666553 444 444555699999999999999999887653
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=522.85 Aligned_cols=383 Identities=17% Similarity=0.226 Sum_probs=294.8
Q ss_pred HHHHHHhccccCCcccCCC-ccccchhhHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHcCCEECCCcEECccccCC
Q 037878 1255 ISITIFGNSFLRPNYTLNP-EVSIWSADFVKWWALYKVHEVSCKVLAVYLRGTVFLNWWFEMLGAKLGSSVLLDTVDITD 1333 (2280)
Q Consensus 1255 ~~~~~~~~~~l~~~~~~~p-~yp~~~~~~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~R~lGa~Ig~~v~i~~~~~~~ 1333 (2280)
+++.++.||++.++ +|| +||+||++|+|||+++|+++.+...+ ..+.++++++.|||+|||||||+|+|++....+
T Consensus 293 ~~~~~~~krll~~~--~kpG~yp~~~~~~~r~W~~~~l~~~~~~~~-~~l~~s~~~~~ylRlLGAkIGk~v~i~t~~~~~ 369 (695)
T TIGR02353 293 VLLLAAVRLLLNLV--LKPGRYYVHSGFYYQAWTVQQLMDNSRVLL-FPLYASSYIPHWYRALGAKIGKVAEISSAQHEV 369 (695)
T ss_pred HHHHHHHHHHhcCC--CCCccccchhHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHhCCeeCCCeEeccccCCC
Confidence 33366679999999 899 99999999999999999998886543 346889999999999999999999999888777
Q ss_pred CCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCccCC------CCccccC
Q 037878 1334 PSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSEG------GKPILKS 1407 (2280)
Q Consensus 1334 ~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v~~------~~~~~~g 1407 (2280)
|||++||||++|++++.+.++++++|.+++++|+||+||+||+++++.||++||||+.||++|+++. |+.| .|
T Consensus 370 pdLltIG~g~~iad~v~~~~~~~~~g~l~~~~i~IG~~afVGn~~vv~pG~~ig~~~llg~~S~~p~~~~~~~g~~w-~G 448 (695)
T TIGR02353 370 PDLTDIGEETFIADGLLMGNARLSGGWFRLGRTRIGRRSFLGNSGYYPPGAKTGDNVLLGVLSMTPKDGKVREGVGW-LG 448 (695)
T ss_pred CcceEECCCcEeccCcEEeeeEEeCCeEEEeeEEECCCcEEcCceeECCCCEeCCCCEEeecccCCCCccCCCCCEE-eC
Confidence 9999999999999999999999999999999999999999999999999999999999999998844 5677 68
Q ss_pred CCceeeccCCCcc---ccccccchhHHHHHhhhhhhHHHHHHHHH--HHH-HHHHHHhccCCCCchhhHHHHhhccccch
Q 037878 1408 TNANYVQKGGAVS---KISTHRTQDEAIHQFIGIYIVSFLSTLSA--AIT-YFLYIWLSQKPASPRHFAFLCISGAFHWL 1481 (2280)
Q Consensus 1408 ~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1481 (2280)
||+.......... ...+..++.+....+...+...++..... .+. +.+...... . +.....|
T Consensus 449 SPa~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~- 516 (695)
T TIGR02353 449 SPPFELPRRVNRDDELEALTFEPDPRRRLARKNVENLRIILPFLLVQWAMLFALVVLDLQ-------A----LDDYTEW- 516 (695)
T ss_pred CCCeeCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HhhhhHH-
Confidence 9987653211111 11112221111222222333322211111 111 111000000 0 0000000
Q ss_pred hHHHhhhhhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccchhhHHHHHHHHHhh-hhh
Q 037878 1482 PFTIIAYATMFASVPANPAYFAISTAVAYLFHGLVLSYLTCILTHFLAGKKE------EKQTHLKAWLCHRITIAC-HLR 1554 (2280)
Q Consensus 1482 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~w~~~~~~~~~-~~~ 1554 (2280)
...++......++.+++..++++++||++.+|.+ .+.+.||.|..++++... .+.
T Consensus 517 ------------------~~~~~~~~~~~~~~~~~~~~~~v~~kwll~gr~~pg~~plws~~~wr~~~~~~~~~~~~~~~ 578 (695)
T TIGR02353 517 ------------------GAVALLAALILMAVGVGAFLILVERKWLVFGRLKPQEHPLWSPFVWLHELHWKLYESVAVPN 578 (695)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHhhhheeeCCCCCccccccccceeehhHHHHHHHHHHhhh
Confidence 0111122223344455556778889999988543 344678888888887553 567
Q ss_pred hhhhccCCchHHHHHHHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccC
Q 037878 1555 FAKLLSGTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQ 1634 (2280)
Q Consensus 1555 ~~~~l~gt~~~~~~lR~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~ 1634 (2280)
++..+.||++++.|+|++|+|||++|+|++. .+.++++++|||+|+|+++|.|++|.++++.++.++++||++|+||++
T Consensus 579 ~l~~l~Gt~~~~~~lr~lGa~IG~~v~i~~~-~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~ 657 (695)
T TIGR02353 579 FLRPFRGTPFLPAILRLLGVKIGRGVYIDGT-DLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPG 657 (695)
T ss_pred hhhccCCcHHHHHHHHHCCCEECCCeEECCe-eccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCC
Confidence 7899999999999999999999999999985 367789999999999999999999999999999999999999999999
Q ss_pred CeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1635 SLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1635 ~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
|+|++|++|||||+||++|+|++++++|+|++|.||||
T Consensus 658 a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 658 AIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred CEECCCCEECCCCEECCCCEEcCCcccCCCCEEEeccC
Confidence 99999999999999999999999888999999999995
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=529.46 Aligned_cols=499 Identities=21% Similarity=0.312 Sum_probs=374.4
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.++++++++. .|+++|+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|+++++++++
T Consensus 33 ~~l~~~l~~~a~~--~p~~~al~~~~------~~~Ty~~l~~~~~~la~~L~~~---g~~~g~~V~i~~~n~~~~~~~~l 101 (567)
T PRK06178 33 RPLTEYLRAWARE--RPQRPAIIFYG------HVITYAELDELSDRFAALLRQR---GVGAGDRVAVFLPNCPQFHIVFF 101 (567)
T ss_pred ccHHHHHHHHHHH--CCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCcHHHHHHH
Confidence 5788999988876 48999987543 4799999999999999999988 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCcccc---ccccc--------
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHT---DSWVK-------- 616 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~---~~~~~-------- 616 (2280)
||+++|++++|++|..+.++ +.++++++++++++++....+.+.... ......+.. .+...
T Consensus 102 A~~~~G~~~v~l~p~~~~~~-------~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 174 (567)
T PRK06178 102 GILKLGAVHVPVSPLFREHE-------LSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLP 174 (567)
T ss_pred HHHHhCeEEeecCCCCCHHH-------HHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccc
Confidence 99999999999999998777 889999999999999876543222100 000000000 00000
Q ss_pred ---------------cccccc-cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH-HcCCCCCcEE
Q 037878 617 ---------------NSKNLL-AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK-RYKSTSKTVL 679 (2280)
Q Consensus 617 ---------------~~~~~~-~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~-~~~~~~~d~~ 679 (2280)
...... ...........++++|+|+|||||||.||||++||+++...+..... ......++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~ 254 (567)
T PRK06178 175 DSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVF 254 (567)
T ss_pred cccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEE
Confidence 000000 00011122356789999999999999999999999998877655433 3567889999
Q ss_pred EEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCC
Q 037878 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759 (2280)
Q Consensus 680 l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~ 759 (2280)
+.++|++|.+++...++.++..|+++++.++ .++..++..++++++|....+|..+..+..... ....+++
T Consensus 255 l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~-----~~~~~l~ 325 (567)
T PRK06178 255 LSFLPEFWIAGENFGLLFPLFSGATLVLLAR----WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR-----FAEYDLS 325 (567)
T ss_pred EEecchHHHHHHHHHHHHHHHcCceEEEeCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----CCCCCcc
Confidence 9999999999987788899999999998763 389999999999999999998888777654321 1224567
Q ss_pred CccEEEEe--cCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccC-CCCceeecCCCceeeccccCCCCCc
Q 037878 760 SMKFLMVA--AEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYG-QGKPIILDWQGRVCCGYVDQNDPDV 836 (2280)
Q Consensus 760 ~Lr~l~~g--Ge~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~-~~~~~~~~~~g~~~~g~vG~p~pg~ 836 (2280)
++|.+..+ |+++++++.++|.+.++ ...+.+.||+||++..++.... ...+. .-....+++|.|+||+
T Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~YG~tE~~~~~~~~~~~~~~~~----~~~~~~~~vG~p~~g~ 396 (567)
T PRK06178 326 SLRQVRVVSFVKKLNPDYRQRWRALTG-----SVLAEAAWGMTETHTCDTFTAGFQDDDF----DLLSQPVFVGLPVPGT 396 (567)
T ss_pred hheeeeeccccccCCHHHHHHHHHHhC-----CcccccccccccccccceeccccccCcc----ccccCCcccccccCCc
Confidence 88876544 59999999999988752 2234468999998765443211 10100 0012346789999999
Q ss_pred eEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCe
Q 037878 837 DIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDL 915 (2280)
Q Consensus 837 ~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~ 915 (2280)
+++|+|++.+ ..++.|++|||+|+|++++.||+++++.+++.|. +|||+|||+++++ ||.++|+||+||+
T Consensus 397 ~v~v~d~~~~-~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~--------dg~~~TGDl~~~~~~g~l~i~GR~~d~ 467 (567)
T PRK06178 397 EFKICDFETG-ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR--------DGWLHTGDIGKIDEQGFLHYLGRRKEM 467 (567)
T ss_pred EEEEEcCCCC-CcCCCCCceEEEEECCcccccccCChhhhhhccc--------CCceeecceEEEecCCeEEEEeccccc
Confidence 9999997654 4457999999999999999999999999988774 3799999999996 9999999999999
Q ss_pred EEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHH
Q 037878 916 IIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRV 994 (2280)
Q Consensus 916 IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l 994 (2280)
||++|++|+|.|||+++.++++|.+ ++|++.+++..+ +....++ ...++.. ..+++.+.+++++
T Consensus 468 i~~~G~~i~~~eiE~~l~~~~~v~~---~~v~~~~~~~~g----------~~~~~~v--~~~~~~~~~~~~l~~~~~~~l 532 (567)
T PRK06178 468 LKVNGMSVFPSEVEALLGQHPAVLG---SAVVGRPDPDKG----------QVPVAFV--QLKPGADLTAAALQAWCRENM 532 (567)
T ss_pred EEECCEEECHHHHHHHHHhCCCeeE---EEEEcCcCcccC----------cceEEEE--EeCCCCcCCHHHHHHHHHhcC
Confidence 9999999999999999999999875 788887665322 1222222 2222222 2345666676666
Q ss_pred HHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 995 VEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 995 ~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
.. +++|. +..++++|+|++||++|++|++++.+
T Consensus 533 ~~-~~~p~----i~~v~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 533 AV-YKVPE----IRIVDALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred cc-cCCce----EEEeccCCCCCccceeHHHHHHHHHh
Confidence 53 45552 33458999999999999999988754
|
|
| >cd08150 catalase_like Catalase-like heme-binding proteins and protein domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=490.76 Aligned_cols=273 Identities=24% Similarity=0.339 Sum_probs=238.4
Q ss_pred cccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCCcccccccccEEEeeccCCCCCCcceeeec
Q 037878 1713 KSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSSLLDLTL 1792 (2280)
Q Consensus 1713 ~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~D~~~~~rG~Aik~~~~~~~~~~~~~D~~~ 1792 (2280)
++|.+||||.|++|+|+|++++++++++++|++|++|||++||||++| .+|+.+|+|||||||++.+ ++++|||+|
T Consensus 1 g~R~~Hakg~~a~G~F~v~~~~~~~~~~~~f~~~~~~pv~~RfS~~~g-~~D~~~~~RG~AiKf~~~~---~~~~~D~v~ 76 (283)
T cd08150 1 GLRGQHFQGTCAFGTFEVLADLKERLRVGLFAEGKVYPAYIRFSNGAG-IDDTKPDIRGFAIKFTGVA---DAGTLDFVL 76 (283)
T ss_pred CcCcccCCeeeEEEEEEEcCCcchhhhcccccCCCeeEEEEEeCCCCC-CcccCCCCceEEEEEEecC---CCceEeEEE
Confidence 479999999999999999999999999999999999999999999998 7799999999999998752 467899999
Q ss_pred ccccccccCChhhHHHHHhhccchh---------hhhhccCcchhhhhh-hcccCCCccccceeeeeeeEEEEEeCCcEE
Q 037878 1793 KTGNAFYARTIGDFATWLVCGLAAR---------EEHVKRVPHIRDAVW-KSLRLSDSYAEMHYYSNICRLFRFTDGQEM 1862 (2280)
Q Consensus 1793 ~n~p~f~~~~~~~f~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~p~s~~~~~y~s~~~~~~~~~~g~~~ 1862 (2280)
||+|+|++++.++|.+++++..+.+ +.++..+|.....+. ...+.|.||++++|||+|+|+|+|++|+.+
T Consensus 77 ~n~pvF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~s~~~~~y~s~~~f~f~~~~gk~~ 156 (283)
T cd08150 77 NNTPVFFIRNTSDYEDFVAEFARSARGEPPLDFIAWYVEKRPEDLPNLLGARSQVPDSYAAARYFSQVTFAFINGAGKYR 156 (283)
T ss_pred eCCCcCccCCHHHHHHHHHhccCCccCCCChHHHHHHHHhChhHHHHHHHHhCCCCCCccccceEeeeeEEEeccCCEEE
Confidence 9999999999999999987764322 355666664443322 222789999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCCCccccccc
Q 037878 1863 YVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDI 1942 (2280)
Q Consensus 1863 ~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~d~~~~~~~ 1942 (2280)
||||+++|.+|...++.++ .+.+++|||+++|.+||+++ +++|+|+||+++++|.||++
T Consensus 157 ~vr~~~~P~~g~~~l~~~~------------------~~~~~~d~L~~~l~~rl~~~-~~~~~l~vQl~~~~d~~~i~-- 215 (283)
T cd08150 157 VVRSKDNPVDGIPSLEDHE------------------LEARPPDYLREELTERLQRG-PVVYDFRIQLNDDTDATTID-- 215 (283)
T ss_pred EEEEEecccCCCcccchhh------------------hcCCCcCHHHHHHHHHHHhC-CceEEEEEEEccccccCCCC--
Confidence 9999999977766554432 23357899999999999997 69999999999999986655
Q ss_pred cccCCCCCCCCCCCceeeEEEEecCCCChhhhccccccCCcCCCccccccCCCcccccccccchhhHHHhhhHhhc
Q 037878 1943 ALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRN 2018 (2280)
Q Consensus 1943 ~~D~t~~W~~~~~p~~~vg~l~i~~~~~~~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~s~~~R~ 2018 (2280)
|+||+|||+ +|+++||+|+|++++.+++||+++|||.+.++||++++ |+.||+|+|+.+|.+|+++|+
T Consensus 216 --D~t~~Wpe~-~p~~~vg~l~i~~~~~~~~~~~~~f~p~~~~~gi~~~~-----d~g~i~~~R~~~Y~~S~~~R~ 283 (283)
T cd08150 216 --NPTILWPTE-HPVEAVAKITIPPPTFTAAQEAFAFNPFTPWHGLLETN-----DLGPILEVRRRVYTSSQGLRH 283 (283)
T ss_pred --CCCcCCCCC-CCceEEEEEEECCCCCcHHHHHHhcCCCCCCCccCCCC-----CchHHHHHHHHHHHHHHHhhC
Confidence 999999999 99999999999998777999999999999999999998 222999999999999999996
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. |
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-49 Score=529.37 Aligned_cols=501 Identities=18% Similarity=0.181 Sum_probs=360.7
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
+....+++.+.. +|+++|+.+.. +.+||+||.++++++|+.|.+. |+++||+|+++++|+++++++++|
T Consensus 21 ~~~~~~~~~~~~--~p~~~a~~~~~------~~~ty~eL~~~~~~lA~~L~~~---g~~~gd~V~i~~~n~~~~~~~~la 89 (567)
T PLN02479 21 TPLWFLERAAVV--HPTRKSVVHGS------VRYTWAQTYQRCRRLASALAKR---SIGPGSTVAVIAPNIPAMYEAHFG 89 (567)
T ss_pred CHHHHHHHHHhh--CCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCcHHHHHHHHH
Confidence 466777777765 48999987521 4799999999999999999998 899999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-----C---C-CCCC-cccccccc----
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-----S---W-PNLP-WLHTDSWV---- 615 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-----~---~-~~~~-~~~~~~~~---- 615 (2280)
|+++|++++|+++..+.++ +.+++++++++.++++....+..... . . ...+ .+......
T Consensus 90 ~~~~G~v~v~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (567)
T PLN02479 90 VPMAGAVVNCVNIRLNAPT-------IAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPK 162 (567)
T ss_pred HHhCCcEEEEeccccCHHH-------HHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcc
Confidence 9999999999999998887 88999999999999876543211100 0 0 0000 00000000
Q ss_pred -------cc---ccccccc--cc-cccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEE
Q 037878 616 -------KN---SKNLLAE--NV-VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682 (2280)
Q Consensus 616 -------~~---~~~~~~~--~~-~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~ 682 (2280)
.. ..+.... .. ........+++++|+|||||||.||||++||+++..........+++..+++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (567)
T PLN02479 163 SLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWT 242 (567)
T ss_pred ccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEe
Confidence 00 0000000 00 00112234577889999999999999999999987766666667788899999999
Q ss_pred cCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCcc
Q 037878 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMK 762 (2280)
Q Consensus 683 ~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr 762 (2280)
+|++|.+++...+...+..|.++++.. .++..+++.++++++|++..+|.++..+.+...... ..+++++|
T Consensus 243 ~p~~h~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----~~~~~~l~ 313 (567)
T PLN02479 243 LPMFHCNGWCFTWTLAALCGTNICLRQ-----VTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET----ILPLPRVV 313 (567)
T ss_pred cchhhhhhHHHHHHHHhhcCceEeccC-----CCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc----ccccccee
Confidence 999999997665555667776655432 289999999999999999999999998876533211 12578899
Q ss_pred EEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCC-ceeeccccCCCCCce-EEE
Q 037878 763 FLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQG-RVCCGYVDQNDPDVD-IRI 840 (2280)
Q Consensus 763 ~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g-~~~~g~vG~p~pg~~-v~I 840 (2280)
.++++|+++++++.++|.+. +..+++.||+||++..++............... ....+.+|.+.++++ ++|
T Consensus 314 ~~~~~G~~~~~~~~~~~~~~-------~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i 386 (567)
T PLN02479 314 HVMTAGAAPPPSVLFAMSEK-------GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV 386 (567)
T ss_pred EEEEcCCCCCHHHHHHHHhc-------CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeE
Confidence 99999999999999888753 457999999999865433221100000000000 111235677888876 899
Q ss_pred EcCCCCcccCCCC-CeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE
Q 037878 841 VNPETSEEIGEPG-KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV 918 (2280)
Q Consensus 841 vd~~~~~~~~p~G-~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi 918 (2280)
+|++++..+.+.| ++|||+++|++++.|||++|+.|+++|. ++||||||+++++ ||.++|+||.||+||+
T Consensus 387 ~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~--------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~ 458 (567)
T PLN02479 387 VDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA--------NGWFHSGDLGVKHPDGYIEIKDRSKDIIIS 458 (567)
T ss_pred EcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc--------CCceecceeEEEcCCccEEEeccccceEEe
Confidence 9976544442233 6799999999999999999999999985 3799999999997 9999999999999999
Q ss_pred CCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC------CCHHHHHHHHH
Q 037878 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP------VDKDVIENIKT 992 (2280)
Q Consensus 919 ~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~------~~~~l~~~l~~ 992 (2280)
+|+||+|.|||++|.+||.|.+ ++|++.+++..+ ....+++.. ..+.. ..+++.+.+++
T Consensus 459 ~G~~v~~~eIE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v~~--~~~~~~~~~~~~~~~l~~~~~~ 523 (567)
T PLN02479 459 GGENISSLEVENVVYTHPAVLE---ASVVARPDERWG----------ESPCAFVTL--KPGVDKSDEAALAEDIMKFCRE 523 (567)
T ss_pred CCEEEcHHHHHHHHHhCcccce---eeEEeccchhcC----------ceeEEEEEe--cCcccccchhhhHHHHHHHHHh
Confidence 9999999999999999999875 888887654321 122222222 22211 11344555555
Q ss_pred HHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 993 RVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 993 ~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+|+. ++.| ..+.. ++||+|++||++|++|++++.+
T Consensus 524 ~l~~-~~~P---~~~~~-~~iP~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 524 RLPA-YWVP---KSVVF-GPLPKTATGKIQKHVLRAKAKE 558 (567)
T ss_pred hccc-ccCC---ceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence 5543 3333 33333 6799999999999999887544
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=528.13 Aligned_cols=490 Identities=24% Similarity=0.328 Sum_probs=365.7
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.++++++.. |+++|+.+.+ +.+||.||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 20 ~~~~~~~~~~~~~~~--p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~---gi~~g~~V~i~~~~~~~~~~~~ 88 (541)
T TIGR03205 20 RGTLPDLLSKAAADY--GPRPALEFRD------RPITYTELEAMAETAAAALLRA---GYGKDASVALYLGNTPDHPINF 88 (541)
T ss_pred CCCHHHHHHHHHHHc--CCCceEEECC------cEeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCChHHHHHH
Confidence 447888998887764 8899987532 4799999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccc--hhh----ccCCCCCCCccccccc-------
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYH--SAV----RVGSWPNLPWLHTDSW------- 614 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~--~~~----~~~~~~~~~~~~~~~~------- 614 (2280)
|||+++|++++|+++..+.++ +.+++++++++.++++.... ... .............+..
T Consensus 89 la~~~~G~~~v~l~~~~~~~~-------l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (541)
T TIGR03205 89 FGALKAGARVVHLSPLDGERA-------LSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQ 161 (541)
T ss_pred HHHHhcCeEEEecCCCCCHHH-------HHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccc
Confidence 999999999999999998887 88999999999999875211 000 0000000000000000
Q ss_pred ---ccc-----cccc--ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH-----cCCCCCcEE
Q 037878 615 ---VKN-----SKNL--LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-----YKSTSKTVL 679 (2280)
Q Consensus 615 ---~~~-----~~~~--~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~-----~~~~~~d~~ 679 (2280)
... .... ............++++++++|||||||.||||+++|+++.+........ ......+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (541)
T TIGR03205 162 APIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERV 241 (541)
T ss_pred cccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceE
Confidence 000 0000 0000111223567899999999999999999999999987655432111 112345789
Q ss_pred EEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCC
Q 037878 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759 (2280)
Q Consensus 680 l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~ 759 (2280)
++.+|++|.+++...++.++..|+++++... .++..+++.++++++|++..+|+++..+.+... ....+++
T Consensus 242 l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~~~~~~~ 312 (541)
T TIGR03205 242 ICVLPLFHIYALTVILLRSLRRGDLISLHQR----FDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-----LEKRDLS 312 (541)
T ss_pred EEeccHHHHHHHHHHHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc-----ccccCcc
Confidence 9999999999988888999999998877642 389999999999999999999999887764211 1124578
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEE
Q 037878 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIR 839 (2280)
Q Consensus 760 ~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~ 839 (2280)
++|.+++||+++++++.+++.+.+ +..+++.||+||++..++...... ....+++|.|+++++++
T Consensus 313 ~l~~i~~gg~~~~~~~~~~~~~~~------~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~ 377 (541)
T TIGR03205 313 SLATIGSGGAPLPVEVANFFERKT------GLKLKSGWGMTETCSPGTGHPPEG---------PDKPGSIGLMLPGIELD 377 (541)
T ss_pred ccceEEEccccCCHHHHHHHHHHh------CCCeecccccccCCcccccCCCCC---------CCCCCCcceeccCceeE
Confidence 999999999999999998887753 467999999999987655432110 11235789999999999
Q ss_pred EEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE
Q 037878 840 IVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV 918 (2280)
Q Consensus 840 Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi 918 (2280)
|++.+.....++.|+.|||+++|++++.||+|+|+.|++.|.. +||+|||+++++ ||.++++||.||+||+
T Consensus 378 v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~~~~TGD~~~~~~~g~l~i~GR~~~~i~~ 449 (541)
T TIGR03205 378 VVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVG--------DRFLTGDIGYMDTDGYFFLVDRKKDMIIS 449 (541)
T ss_pred EEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhcc--------CCcccCceEEEcCCceEEEEccccCeEEE
Confidence 8753222245578999999999999999999999999998853 689999999996 9999999999999999
Q ss_pred CCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC--CCCHHHHHHHHHHHHH
Q 037878 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK--PVDKDVIENIKTRVVE 996 (2280)
Q Consensus 919 ~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~--~~~~~l~~~l~~~l~~ 996 (2280)
+|+||+|.|||+++.++++|.+ ++|++++++..+ +...+++ ....+. ....++.+.++++|..
T Consensus 450 ~G~~i~~~eIE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v--~~~~~~~~~~~~~l~~~~~~~l~~ 514 (541)
T TIGR03205 450 GGFNVYPQMIEQAIYEHPGVQE---VIVIGIPDQYRG----------EAAKAFV--KLRPGAKPFSLDELRAFLAGKLGK 514 (541)
T ss_pred CCEEECHHHHHHHHHhCCCeee---EEEEecCCcccC----------ceEEEEE--EECCCCCcCCHHHHHHHHHhhccc
Confidence 9999999999999999998865 888888765322 1222222 222221 1224566666666654
Q ss_pred hcCcceeEEEEecCCCccCCCCcccchHHH
Q 037878 997 EHGVTVASVKLIKPRTMSKTTSGKIKRFEC 1026 (2280)
Q Consensus 997 ~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L 1026 (2280)
+++| ..+..+++||+|++||++|++|
T Consensus 515 -~~~P---~~i~~~~~iP~t~~gK~~r~~l 540 (541)
T TIGR03205 515 -HELP---VAVEFVDELPRTPVGKLSRHEL 540 (541)
T ss_pred -ccCC---cEEEEeccCCCCcccceeHhhc
Confidence 3444 4555569999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-49 Score=527.31 Aligned_cols=506 Identities=17% Similarity=0.231 Sum_probs=372.6
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++.+++ +|+++++.... ++. .+++||+||.++++++|++|.+. |+++||+|+++++|++++++++
T Consensus 9 ~~~~~~~~~~~a~~--~~~~~~~~~~~-~~~-~~~~Ty~el~~~v~~la~~L~~~---g~~~gd~v~i~~~~~~~~~~~~ 81 (542)
T PRK06018 9 PLLCHRIIDHAARI--HGNREVVTRSV-EGP-IVRTTYAQIHDRALKVSQALDRD---GIKLGDRVATIAWNTWRHLEAW 81 (542)
T ss_pred CCCHHHHHHHHHHh--CCCceEEEeec-cCC-ceEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCchHHHHHH
Confidence 34788999999887 48999987432 222 36899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCccc-ccccc--cc-----
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLH-TDSWV--KN----- 617 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~----- 617 (2280)
|||+++|++++|+++.++.++ +..+++.++++.++++.+....+... ..+....+. ..+.. ..
T Consensus 82 la~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (542)
T PRK06018 82 YGIMGIGAICHTVNPRLFPEQ-------IAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKN 154 (542)
T ss_pred HHHHhcCeEeeccccccCHHH-------HHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccc
Confidence 999999999999999999888 88999999999999987654332210 011111000 00000 00
Q ss_pred ---ccccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHH-HH-HHHHHHHcCCCCCcEEEEEcCchhhhh
Q 037878 618 ---SKNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLI-HN-VKLMRKRYKSTSKTVLVSWLPQYHDMG 690 (2280)
Q Consensus 618 ---~~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~-~~-~~~~~~~~~~~~~d~~l~~~pl~h~~g 690 (2280)
..+.. ...........++++++|+|||||||.||||++||++.+ +. .......+++..+|+++.++|++|..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~ 234 (542)
T PRK06018 155 AVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANS 234 (542)
T ss_pred cccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhh
Confidence 00000 000011123456889999999999999999999999743 22 233345677889999999999999988
Q ss_pred HHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCC
Q 037878 691 LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770 (2280)
Q Consensus 691 l~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~ 770 (2280)
+. ..+.++..|+++++... . .++..+++.++++++|++.++|+.+..+.+...... .+++++|.+++|||+
T Consensus 235 ~~-~~~~~~~~g~~~v~~~~-~--~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----~~~~~lr~~~~~G~~ 305 (542)
T PRK06018 235 WG-IAFSAPSMGTKLVMPGA-K--LDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----LKLPHLKMVVCGGSA 305 (542)
T ss_pred hH-HHHhhhhcCceEEccCc-C--CCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----CCcccceEEEEcCCC
Confidence 74 44677889998887532 2 378899999999999999999999988876543221 457899999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCC-ceeecCCCceeeccccCCCCCceEEEEcCCCCccc
Q 037878 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGK-PIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849 (2280)
Q Consensus 771 l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~-~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~ 849 (2280)
+++++.++|.+ + ++.+++.||+||++.+++....... ............+++|+|.++++++|+|+++. .+
T Consensus 306 l~~~~~~~~~~-~------~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~-~~ 377 (542)
T PRK06018 306 MPRSMIKAFED-M------GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGK-EL 377 (542)
T ss_pred CCHHHHHHHHH-h------CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCC-CC
Confidence 99999999987 4 4579999999999876543221110 00000000112357899999999999998753 33
Q ss_pred CCC-CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHH
Q 037878 850 GEP-GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSAD 927 (2280)
Q Consensus 850 ~p~-G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~E 927 (2280)
... +..|||+++|++++.||+++. .+.+ ..++||+|||+++++ ||.++|+||.||+||++|++|++.|
T Consensus 378 ~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~-------~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~e 447 (542)
T PRK06018 378 PWDGKTFGRLKVRGPAVAAAYYRVD---GEIL-------DDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSID 447 (542)
T ss_pred CCCCCceeEEEEecCCcchhhhcCc---ccEe-------cCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHH
Confidence 222 368999999999999999832 2222 235899999999996 9999999999999999999999999
Q ss_pred HHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcceeEEE
Q 037878 928 VEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTVASVK 1006 (2280)
Q Consensus 928 IE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~ 1006 (2280)
||+++.++|+|.+ |+|++.+++..+ +...+++. ..++... .+++.+.+++++.. ++.| ..
T Consensus 448 IE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v~--~~~~~~~~~~~l~~~~~~~l~~-~~~P---~~ 508 (542)
T PRK06018 448 LENLAVGHPKVAE---AAVIGVYHPKWD----------ERPLLIVQ--LKPGETATREEILKYMDGKIAK-WWMP---DD 508 (542)
T ss_pred HHHHHHhCCccee---EEEEeccCCCcC----------ceeEEEEE--eCCCCCCCHHHHHHHHHhhCcc-ccCC---cE
Confidence 9999999999875 889988775432 22222222 2233222 25667777776654 4444 34
Q ss_pred EecCCCccCCCCcccchHHHHHHhhcC
Q 037878 1007 LIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1007 lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
+..+++||+|++||+||++|++++.+.
T Consensus 509 i~~v~~iP~t~~GKi~r~~L~~~~~~~ 535 (542)
T PRK06018 509 VAFVDAIPHTATGKILKTALREQFKDY 535 (542)
T ss_pred EEEeccCCCCCcchhhHHHHHHHHhcc
Confidence 445599999999999999999998764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=574.70 Aligned_cols=489 Identities=21% Similarity=0.286 Sum_probs=369.2
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.+++.+++. .+++.++... ++ +++||+||+++++++|+.|+ . |+++||+|+++++|++++++++
T Consensus 630 ~~~~~~~l~~~~~~~-~~~~~ai~~~--~~---~~~Ty~el~~~~~~lA~~L~-~---g~~~gd~V~i~~~n~~~~~~~~ 699 (1140)
T PRK06814 630 DRTLFEALIEAAKIH-GFKKLAVEDP--VN---GPLTYRKLLTGAFVLGRKLK-K---NTPPGENVGVMLPNANGAAVTF 699 (1140)
T ss_pred cCCHHHHHHHHHHHc-CCCCeEeECC--CC---CccCHHHHHHHHHHHHHHHH-h---cCCCCCeEEEEcCCchHHHHHH
Confidence 345666776666553 2466776431 11 57999999999999999996 4 7999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC----CC-CCCCccccccccccc----
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG----SW-PNLPWLHTDSWVKNS---- 618 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~---- 618 (2280)
+||+++|++++|+|+..+.++ +.+++++++++.++++....+..... .. .....+..++.....
T Consensus 700 la~~~~G~v~v~l~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 772 (1140)
T PRK06814 700 FALQSAGRVPAMINFSAGIAN-------ILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLAD 772 (1140)
T ss_pred HHHHHCCCEEEEcCCCCCHHH-------HHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHH
Confidence 999999999999999999888 88999999999999986543211100 00 011111111110000
Q ss_pred --cccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHH
Q 037878 619 --KNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 619 --~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
.... ..+....+...++|+++|+|||||||.||||++||+++.+.+......++.+++|++++++|++|.+++...
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 852 (1140)
T PRK06814 773 KIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGG 852 (1140)
T ss_pred HHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHH
Confidence 0000 000001113578999999999999999999999999999999888888999999999999999999999888
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHH
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQT 774 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~ 774 (2280)
++.++..|+++++.+.. .++..+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||+++++
T Consensus 853 ~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~-------~~~~~~~lr~v~~gg~~l~~~ 922 (1140)
T PRK06814 853 LVLPLLSGVKVFLYPSP---LHYRIIPELIYDTNATILFGTDTFLNGYARYA-------HPYDFRSLRYVFAGAEKVKEE 922 (1140)
T ss_pred HHHHHHcCCEEEEecCc---ccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc-------ccccccceeEEEEcCCcCCHH
Confidence 89999999999886531 25677889999999999999999988776531 125678999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCC
Q 037878 775 TVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854 (2280)
Q Consensus 775 l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~ 854 (2280)
+.++|.+.+ +++++|.||+||++..++..... ....+++|+|+|++++++.|.++ .|+
T Consensus 923 ~~~~~~~~~------~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~~g~~~~~~~~~~------~~~ 980 (1140)
T PRK06814 923 TRQTWMEKF------GIRILEGYGVTETAPVIALNTPM----------HNKAGTVGRLLPGIEYRLEPVPG------IDE 980 (1140)
T ss_pred HHHHHHHHh------CCcEEeccccccccceEEecCCC----------CCCCCcCCccCCCCeEEEeecCC------CCC
Confidence 999998864 46799999999998765543211 11246789999999999987432 467
Q ss_pred eeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHH
Q 037878 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVE 933 (2280)
Q Consensus 855 ~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~ 933 (2280)
.|||+++|++++.||+++++.+. +. ...+|||+|||+++++ ||.++|+||.||+||++|+||+|.|||++|.
T Consensus 981 ~Gel~v~g~~~~~gY~~~~~~~~--~~-----~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~ 1053 (1140)
T PRK06814 981 GGRLFVRGPNVMLGYLRAENPGV--LE-----PPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAA 1053 (1140)
T ss_pred ceEEEEeCCCcchhhcCCCCCCc--cc-----cCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHH
Confidence 89999999999999998765321 11 1246899999999997 9999999999999999999999999999999
Q ss_pred hccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCc
Q 037878 934 SSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTM 1013 (2280)
Q Consensus 934 ~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~l 1013 (2280)
+|+++.+ ++|++++++..+ +. ++++.. ......+++.+.++++..+.+++| ..++.++++
T Consensus 1054 ~~~~v~~---~~vv~~~~~~~g----------~~--~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~P---~~i~~v~~l 1113 (1140)
T PRK06814 1054 ELWPDAL---HAAVSIPDARKG----------ER--IILLTT--ASDATRAAFLAHAKAAGASELMVP---AEIITIDEI 1113 (1140)
T ss_pred hcCCccc---EEEEEcccCCCC----------ce--EEEEEc--CCCcCHHHHHHHHHHcCCCcccCC---cEEEEecCc
Confidence 9998865 888888776432 11 222221 122223455666665422235554 344555999
Q ss_pred cCCCCcccchHHHHHHhhc
Q 037878 1014 SKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1014 P~t~sGKvdR~~L~~~~~~ 1032 (2280)
|+|++||+||++|++...+
T Consensus 1114 P~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814 1114 PLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred CCCCCCCCcHHHHHHHHHH
Confidence 9999999999999887544
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=525.67 Aligned_cols=496 Identities=26% Similarity=0.389 Sum_probs=373.6
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLT-SRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~-~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
..++.++++.++++. |+++|+...+ +.+||.||.++++++|..|.+ + |+++||+|+++++|+++++++
T Consensus 22 ~~~l~~~l~~~a~~~--p~~~a~~~~~------~~lTy~~l~~~~~~la~~L~~~~---g~~~g~~V~i~~~~~~~~~~~ 90 (560)
T PRK08974 22 YQSLVDMFEQAVARY--ADQPAFINMG------EVMTFRKLEERSRAFAAYLQNGL---GLKKGDRVALMMPNLLQYPIA 90 (560)
T ss_pred cccHHHHHHHHHHhC--CCCceEEECC------ccccHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCHHHHHH
Confidence 356888998888764 7899987421 489999999999999999984 6 899999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-CCCCCCcccc----ccc-------
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-SWPNLPWLHT----DSW------- 614 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-~~~~~~~~~~----~~~------- 614 (2280)
+|||+++|++++|+++..+.++ +.+++++++++.++++......+... .......+.. ...
T Consensus 91 ~lA~~~~G~~~v~l~~~~~~~~-------~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (560)
T PRK08974 91 LFGILRAGMIVVNVNPLYTPRE-------LEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTL 163 (560)
T ss_pred HHHHHHcCcEEeccCccCCHHH-------HHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEeccccccccccccc
Confidence 9999999999999999999887 88999999999999875433221100 0000000000 000
Q ss_pred ----------------cccc---ccc---ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC
Q 037878 615 ----------------VKNS---KNL---LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK 672 (2280)
Q Consensus 615 ----------------~~~~---~~~---~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~ 672 (2280)
.... ... ............++++++|+|||||||.||||.++|+++..++......+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~ 243 (560)
T PRK08974 164 VNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG 243 (560)
T ss_pred ccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhc
Confidence 0000 000 000001112246789999999999999999999999999887665444332
Q ss_pred ---CCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcc
Q 037878 673 ---STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749 (2280)
Q Consensus 673 ---~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~ 749 (2280)
...+++++.++|++|.+++....+..+..|+++++..+. .++..+++.++++++|.+..+|+++..+......
T Consensus 244 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~- 319 (560)
T PRK08974 244 PLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNP---RDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF- 319 (560)
T ss_pred cccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCc---cCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc-
Confidence 345678889999999999877777788889887765432 3788899999999999999999999888753221
Q ss_pred cccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccc
Q 037878 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYV 829 (2280)
Q Consensus 750 ~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~v 829 (2280)
...+++++|.+++||+++++++.++|.+.+ ++.+++.||+||++.+++...... ....+++
T Consensus 320 ----~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~------g~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~ 380 (560)
T PRK08974 320 ----QELDFSSLKLSVGGGMAVQQAVAERWVKLT------GQYLLEGYGLTECSPLVSVNPYDL---------DYYSGSI 380 (560)
T ss_pred ----ccCCccceeEEEecCccCCHHHHHHHHHHh------CCcEEeeecccccCceeeccCCCC---------cccCCcc
Confidence 124578999999999999999999998863 567999999999987665432211 1123578
Q ss_pred cCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEE
Q 037878 830 DQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFI 908 (2280)
Q Consensus 830 G~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~ 908 (2280)
|.|+|+++++|+|+++ ..++.|+.|||+|+|+.++.||+++++.+++.|. ++||+|||+++++ +|.+++
T Consensus 381 G~~~~~~~~~i~~~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~g~l~i 450 (560)
T PRK08974 381 GLPVPSTEIKLVDDDG--NEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIK--------DGWLATGDIAVMDEEGFLRI 450 (560)
T ss_pred ccCcCCCEEEEECCCC--CCCCCCCceEEEEecCCcchhhcCChhhhhhhhh--------cCCcccCCEEEEcCCceEEE
Confidence 9999999999999864 3457999999999999999999999999998873 3799999999996 999999
Q ss_pred EecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHH
Q 037878 909 TGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIE 988 (2280)
Q Consensus 909 ~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~ 988 (2280)
+||+||+||++|++|+|.|||++|.++|+|.+ ++|++.+++..+ .....++. ..+.....+++.+
T Consensus 451 ~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~---~~v~~~~~~~~g----------~~~~~~v~--~~~~~~~~~~l~~ 515 (560)
T PRK08974 451 VDRKKDMILVSGFNVYPNEIEDVVMLHPKVLE---VAAVGVPSEVSG----------EAVKIFVV--KKDPSLTEEELIT 515 (560)
T ss_pred EecccceEEeCCEEECHHHHHHHHHhCCCeeE---EEEEeeecCCcc----------eEEEEEEE--CCCCCCCHHHHHH
Confidence 99999999999999999999999999999865 788887665322 12222222 2222222245555
Q ss_pred HHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 989 NIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 989 ~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
.+++++.. + ..|..+..+++||+|.+||++|++|+++..++
T Consensus 516 ~l~~~l~~-~---~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 556 (560)
T PRK08974 516 HCRRHLTG-Y---KVPKLVEFRDELPKSNVGKILRRELRDEARAK 556 (560)
T ss_pred HHHhhccc-c---cCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence 55555543 3 34455556699999999999999998876543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=521.98 Aligned_cols=491 Identities=23% Similarity=0.290 Sum_probs=367.1
Q ss_pred HHHHHHhh-ccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 471 LDGYLKHW-GTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 471 l~~~l~~~-a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
..++++++ ++. +|+++|+... + +.+||.||.++++++|+.|.+. |+++|++|+++++|+.+++++++|
T Consensus 6 ~~~~~~~~~~~~--~p~~~a~~~~--~----~~~ty~~l~~~~~~~a~~L~~~---g~~~g~~v~l~~~~~~~~~~~~~a 74 (508)
T TIGR02262 6 AEDLLDRNVVEG--RGGKTAFIDD--I----SSLSYGELEAQVRRLGAALRRL---GVKREERVLLLMLDGVDFPIAFLG 74 (508)
T ss_pred HHHHHHHHHhcc--cCCceEEEeC--C----ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHH
Confidence 34566655 443 4889988642 1 5799999999999999999988 899999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-ccccccccc---cccccc-
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTDSWVK---NSKNLL- 622 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~~~~~---~~~~~~- 622 (2280)
|+++|++++|+++..+.++ +.++++.++++.++++......+... ..+... .+....... ...+..
T Consensus 75 ~~~~G~~~v~l~~~~~~~~-------l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (508)
T TIGR02262 75 AIRAGIVPVALNTLLTADD-------YAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLA 147 (508)
T ss_pred HHHcCcEEeeccCCCCHHH-------HHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhh
Confidence 9999999999999998887 88999999999999986544322110 011111 000000000 000000
Q ss_pred -cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHH-HHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 623 -AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL-MRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 623 -~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
...........++++++|+|||||||.||||+++|+++...+.. ....++++.+|+++..+|++|++++...++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~ 227 (508)
T TIGR02262 148 TESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMS 227 (508)
T ss_pred cCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHH
Confidence 00011122345789999999999999999999999999887765 4566788999999999999999998778888999
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|++.++.++. .++..+++.++++++|++.++|.++..+...... .....+++|.+++||+++++++.+.|.
T Consensus 228 ~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~-----~~~~~~~l~~~~~~G~~l~~~~~~~~~ 299 (508)
T TIGR02262 228 VGATTVLMGER---PTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL-----PAEDQVRLRLCTSAGEALPAEVGQRWQ 299 (508)
T ss_pred cCceEEEeCCC---CCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-----cccccccceeEEEcCCCCCHHHHHHHH
Confidence 99998887642 2789999999999999999999888766542111 113456899999999999999999999
Q ss_pred HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEE
Q 037878 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860 (2280)
Q Consensus 781 ~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i 860 (2280)
+.+ ++++++.||+||++.+++..... ....+++|.|++|++++|+|+++ ..++.|+.|||+|
T Consensus 300 ~~~------~~~v~~~YG~tE~~~~~~~~~~~----------~~~~~~~G~~~~g~~v~i~d~~~--~~~~~g~~Gel~i 361 (508)
T TIGR02262 300 ARF------GVDIVDGIGSTEMLHIFLSNLPG----------DVRYGTSGKPVPGYRLRLVGDGG--QDVAAGEPGELLI 361 (508)
T ss_pred HHh------CCchhhCccccccCceeecCCcc----------CCCCCCcCCCCCCcEEEEECCCC--CCCCCCCeeEEEE
Confidence 875 46799999999998755432111 11246789999999999999554 4457999999999
Q ss_pred cCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCc
Q 037878 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939 (2280)
Q Consensus 861 ~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~ 939 (2280)
+|++++.||+++|+.+++.|. ++||+|||+++++ ||.++++||+||+||++|.+|+|.|||++|.++++|.
T Consensus 362 ~~~~~~~gY~~~~~~~~~~~~--------~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~ 433 (508)
T TIGR02262 362 SGPSSATMYWNNRAKTRDTFQ--------GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVL 433 (508)
T ss_pred ecCccccccCCCHHHhHhhhh--------cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCee
Confidence 999999999999999998874 3899999999996 9999999999999999999999999999999999986
Q ss_pred CCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCc
Q 037878 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSG 1019 (2280)
Q Consensus 940 ~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sG 1019 (2280)
+ +++++.++... .....+++.. .++......+.+.+++.+...++....+..+..++++|+|++|
T Consensus 434 ~---~~~~~~~~~~~----------~~~~~~~v~~--~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~g 498 (508)
T TIGR02262 434 E---AAVVGVEDEDG----------LIKPKAFIVL--RPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATG 498 (508)
T ss_pred E---EEEEeccccCC----------CceeEEEEEe--CCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCC
Confidence 5 77777654321 1222222222 2221111122333444444333333334445556899999999
Q ss_pred ccchHHHHH
Q 037878 1020 KIKRFECLK 1028 (2280)
Q Consensus 1020 KvdR~~L~~ 1028 (2280)
|++|++|++
T Consensus 499 Ki~r~~l~~ 507 (508)
T TIGR02262 499 KIQRFKLRE 507 (508)
T ss_pred cEehhhccC
Confidence 999987653
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=550.06 Aligned_cols=479 Identities=15% Similarity=0.117 Sum_probs=349.1
Q ss_pred CCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHH
Q 037878 466 PELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVD 545 (2280)
Q Consensus 466 ~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~v 545 (2280)
+...++.+++++++++ +|+++|+.+.+ +++||+||+++++++|+.|++. |+++||+|+|+++|++++++
T Consensus 444 ~~~~sl~~ll~~~a~~--~pd~~Al~~~~------~~lTY~eL~~ra~rlA~~L~~~---Gv~~Gd~VaI~~~n~~e~v~ 512 (994)
T PRK07868 444 HTRISLGRIIAEQARD--APKGEFLLFDG------RVHTYEAVNRRINNVVRGLIAV---GVRQGDRVGVLMETRPSALV 512 (994)
T ss_pred CCCccHHHHHHHHHHH--CCCCeEEEeCC------ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHH
Confidence 4556889999888876 48999997632 4799999999999999999998 99999999999999999999
Q ss_pred HHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccc------------
Q 037878 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDS------------ 613 (2280)
Q Consensus 546 a~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~------------ 613 (2280)
++|||+++|++++|++|. ++ +.++++++++++++++........... ...+..+.
T Consensus 513 a~lA~~~aGav~vpl~p~---~~-------l~~il~~s~~~~li~~~~~~~~~~~~~---~~iiv~~~~~~~~~~~~~~~ 579 (994)
T PRK07868 513 AIAALSRLGAVAVLMPPD---TD-------LAAAVRLGGVTEIITDPTNLEAARQLP---GRVLVLGGGESRDLDLPDDA 579 (994)
T ss_pred HHHHHHhcCCEEEEeCCc---hh-------HHHHHhccCCeEEEEChHHHHHHHhcC---ceEEEecCCccccccCCcch
Confidence 999999999999999984 33 778999999999999765433221100 00000000
Q ss_pred -ccccccccccccc-c---ccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhh
Q 037878 614 -WVKNSKNLLAENV-V---CFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHD 688 (2280)
Q Consensus 614 -~~~~~~~~~~~~~-~---~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 688 (2280)
............. . ...+..++|+|||+|| ||||+||++.++|.+...........++++++|++++++|++|+
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~ 658 (994)
T PRK07868 580 DVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHE 658 (994)
T ss_pred hhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHH
Confidence 0000000000000 0 0012236899999999 57888888888887765555555566788999999999999999
Q ss_pred hhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEec
Q 037878 689 MGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAA 768 (2280)
Q Consensus 689 ~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gG 768 (2280)
+++...++.++.+|+++++.+ .+ +|..+++.++++++|++..+|+++..+++... ....+++++|.++ |
T Consensus 659 ~gl~~~l~~~l~gG~~vvl~~--~~--~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~-----~~~~~~~slr~~~--g 727 (994)
T PRK07868 659 SGLLVSLGGAVVGGSRIALSR--GL--DPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA-----FVLHGNHPVRLFI--G 727 (994)
T ss_pred hHHHHHHHHHhccceEEEecC--CC--CHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC-----CccCCCCceEEEe--c
Confidence 998766667777776666543 23 89999999999999999999999988875321 1124577899876 3
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCc-eEEEE------
Q 037878 769 EPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDV-DIRIV------ 841 (2280)
Q Consensus 769 e~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~-~v~Iv------ 841 (2280)
+.+++++.++|.+.+ +.+.++|.||+||++++++. .. ....+++|+|+||+ +++|.
T Consensus 728 ~gl~~~l~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~-~~-----------~~~~~svG~p~pg~~~v~i~~~d~~~ 790 (994)
T PRK07868 728 SGMPTGLWERVVEAF-----APAHVVEFFATTDGQAVLAN-VS-----------GAKIGSKGRPLPGAGRVELAAYDPEH 790 (994)
T ss_pred CCCCHHHHHHHHHHh-----Cchheeeeeecccccccccc-cC-----------CCCCcccCCccCCCCceeEEEecCcC
Confidence 459999999999875 34779999999998764331 10 01246899999998 66654
Q ss_pred -----cCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHH--HhhhccCCCCCceeecCcEEEEE-CCeEEEEecCC
Q 037878 842 -----NPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQIT--FRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIK 913 (2280)
Q Consensus 842 -----d~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~--f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~d 913 (2280)
|+++....++.|+.|||+++|++ |+ +|+.+..+ |. +++|||||||+|+++ ||+|+|+||+|
T Consensus 791 g~li~d~~G~~~~~~~ge~Gel~~~~~~----~~-~p~~t~~~~~~~------~~dgw~~TGDlg~~d~dG~l~~~GR~d 859 (994)
T PRK07868 791 DLILEDDRGFVRRAEVNEVGVLLARARG----PI-DPTASVKRGVFA------PADTWISTEYLFRRDDDGDYWLVDRRG 859 (994)
T ss_pred CceeecCCceEEEcCCCCceEEEEecCC----CC-ChhhhhHhcccc------cCCEEEeccceEEEcCCCCEEEeccCC
Confidence 33332123478999999999986 44 46554333 31 246999999999997 99999999999
Q ss_pred CeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHH
Q 037878 914 DLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKT 992 (2280)
Q Consensus 914 d~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~ 992 (2280)
||||++|+||+|+|||++|.+||+|.+ |+|++++++. + ...+++++ ..++... .+++.+++++
T Consensus 860 d~Ik~~G~~I~p~EIE~~L~~hp~V~~---aaVvg~~d~~-~---------~~~~a~Vv---~~~~~~~~~~~L~~~l~~ 923 (994)
T PRK07868 860 SVIRTARGPVYTEPVTDALGRIGGVDL---AVTYGVEVGG-R---------QLAVAAVT---LRPGAAITAADLTEALAS 923 (994)
T ss_pred CEEEeCCceEcHHHHHHHHhcCCCeeE---EEEEeecCCC-C---------ceEEEEEE---eCCCCcCCHHHHHHHHHh
Confidence 999999999999999999999999975 8889887642 1 12233332 2333322 2456666653
Q ss_pred HHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 993 RVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 993 ~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
+ +.+++| ..++.+++||+|+|||++|++|+++
T Consensus 924 -l-~~y~vP---~~i~~v~~lP~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 924 -L-PVGLGP---DIVHVVPEIPLSATYRPTVSALRAA 955 (994)
T ss_pred -C-CCCcCC---eEEEEeCCCCCCccccEehHHHHhc
Confidence 4 335544 4555669999999999999998765
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=465.77 Aligned_cols=460 Identities=21% Similarity=0.289 Sum_probs=341.4
Q ss_pred cccccCcccccCCCCCCCCCCCCHHHHHHhhccccccCCceEEEEEc---------CCCc--------eeeeccHHHHHH
Q 037878 448 DNWARNFKELEELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWIN---------EEGV--------AVNQSTYEELDA 510 (2280)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~---------~~g~--------~~~~lTY~eL~~ 510 (2280)
...+|+......+...+++.-.|+.+++++..... .++.++-+.+ .+|+ .+..+||.|+.+
T Consensus 20 ~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~--g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~ 97 (678)
T KOG1180|consen 20 TAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKF--GKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYE 97 (678)
T ss_pred CccccccccCCCccCCCCCCcccHHHHHHHHHHhc--CCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHH
Confidence 34567776656677778888899999998777653 4444443211 1233 247889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCE-EEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEE
Q 037878 511 NASRIAHKLLTSRKPVIKPGDR-VLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAIL 589 (2280)
Q Consensus 511 ~a~~lA~~L~~~~~~Gv~~Gd~-V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl 589 (2280)
++.++|++|... |++++++ ++|+.+.+.+|+++.+||++.+...|-+-.....+. +.+-+.+++++.++
T Consensus 98 ~~~~~gsGL~~l---G~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeea-------l~hsl~Et~~~~i~ 167 (678)
T KOG1180|consen 98 RVHNFGSGLVKL---GLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEA-------LIHSLNETESTAIF 167 (678)
T ss_pred HHHHHHHHHHHh---CCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhh-------hhhhhccccceEEE
Confidence 999999999999 8997776 999999999999999999999999999988887776 77888888999999
Q ss_pred EccccchhhccC--CCCCCC--------------------------ccccccccccccccccccccccCCCCCCCeEEEE
Q 037878 590 STIGYHSAVRVG--SWPNLP--------------------------WLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQ 641 (2280)
Q Consensus 590 ~~~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii 641 (2280)
++.+..+.+... ....+. ...++++ .........++.++.|+|+|+||
T Consensus 168 T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v----~~lG~~~~~~~~~P~p~Dia~IM 243 (678)
T KOG1180|consen 168 TDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDV----EKLGKENEIPPHPPKPSDIACIM 243 (678)
T ss_pred eCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHH----HhhCCcCCCCCCCCCCCceEEEE
Confidence 887655432211 001111 1111111 11111222334556889999999
Q ss_pred eccCCCCCceEEEEchHHHHHHHHHHHHHc-CCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHH
Q 037878 642 FTSGSTGDAKGVMITHGGLIHNVKLMRKRY-KSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLW 720 (2280)
Q Consensus 642 yTSGSTG~PKgV~~tH~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l 720 (2280)
|||||||.||||+++|+|+++.+....... .+.+.|+++.++|++|++.+..++ .+++-|+++=..++..+......+
T Consensus 244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~-~~ft~G~~iGY~S~~TLtdts~ki 322 (678)
T KOG1180|consen 244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAEL-VCFTWGGRIGYSSPLTLTDTSSKI 322 (678)
T ss_pred EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHH-HHHhhCCEeecCCcceecccchhh
Confidence 999999999999999999999998887766 678999999999999999997765 456666666554444332111111
Q ss_pred ----HHHHhhcceeeecCcHHHHHHHHHHHhcccccc-------------------c------------------ccCCC
Q 037878 721 ----LETMSKYRATHSAGPNFAFELMVRRLESSKDKV-------------------R------------------SFDLS 759 (2280)
Q Consensus 721 ----~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~-------------------~------------------~~~l~ 759 (2280)
--.+...++|++.++|.+++.+.+......... . ..-=.
T Consensus 323 ~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG 402 (678)
T KOG1180|consen 323 KKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGG 402 (678)
T ss_pred ccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCC
Confidence 112456789999999998887644322211000 0 00015
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEE
Q 037878 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIR 839 (2280)
Q Consensus 760 ~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~ 839 (2280)
+||++++||+|++++..+.+.-. -+|++.++||.||+|..++..... ....|.+|.|++.++++
T Consensus 403 ~lR~~LsGGapLS~dtQrF~nic------~C~Pv~qGYGLTEtca~~tv~e~~----------d~~~g~vG~pl~c~eiK 466 (678)
T KOG1180|consen 403 NLRYILSGGAPLSPDTQRFMNIC------FCCPVLQGYGLTETCAAATVLEPE----------DFSTGRVGAPLPCCEIK 466 (678)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHh------ccccccccccccchhcccEecChh----------hcccccccCCccceEEE
Confidence 89999999999999965554443 356899999999999887765322 22357899999999999
Q ss_pred EEc-CCCCcccC-CCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeE
Q 037878 840 IVN-PETSEEIG-EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLI 916 (2280)
Q Consensus 840 Ivd-~~~~~~~~-p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~I 916 (2280)
++| +|++...- .+ ..|||+|+|+++..||++|||+|++.|.. .+|.+||+|||+|+++ ||.|.+++|++|.|
T Consensus 467 Lvdw~EgGY~~~~~P-PrGEI~i~G~~vt~gY~kn~ekT~e~ft~----~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLV 541 (678)
T KOG1180|consen 467 LVDWEEGGYFAKNKP-PRGEILIGGPNVTMGYYKNEEKTKEDFTV----EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLV 541 (678)
T ss_pred EEEhhhcCccCCCCC-CCceEEecCCccChhhhCChhhhhhhcee----cCCcEEEeccccceecCCCcEEEeechhhhh
Confidence 999 55542211 12 58999999999999999999999999975 3567899999999996 99999999999999
Q ss_pred EE-CCeeechHHHHHHHHhccCCcCCceeEEEe
Q 037878 917 IV-AGRNVYSADVEKTVESSTEHIRPGCCAVIG 948 (2280)
Q Consensus 917 Ki-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~ 948 (2280)
|+ +|+.|.++-||+++...|-|.- .+|.+
T Consensus 542 Klq~GEYIsL~KvEa~l~s~p~V~N---ICvyA 571 (678)
T KOG1180|consen 542 KLQNGEYISLGKVEAALRSSPYVDN---ICVYA 571 (678)
T ss_pred hhcccceeehHHHHHHHhcCcchhh---eEEec
Confidence 99 8999999999999999998854 45554
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=516.28 Aligned_cols=477 Identities=19% Similarity=0.221 Sum_probs=361.4
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.+.+++.+ +|+++|+... + +.+||+||.++++++|+.|++. |+++||+|+++++|++++++++
T Consensus 34 ~~~~~~~~~~~a~~--~p~~~a~~~~--~----~~lTy~el~~~~~~la~~L~~~---gi~~g~~V~i~~~~~~~~~~~~ 102 (516)
T PRK13383 34 GTNPYTLLAVTAAR--WPGRTAIIDD--D----GALSYRELQRATESLARRLTRD---GVAPGRAVGVMCRNGRGFVTAV 102 (516)
T ss_pred CCcHHHHHHHHHHH--CCCCcEEEeC--C----CcEeHHHHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCHHHHHHH
Confidence 45678888877776 4889998642 2 4799999999999999999988 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVV 627 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (2280)
|||+++|++++|+++..+.++ +.+++++++++.++++......+.... .. ....+.. ..... ..
T Consensus 103 la~~~~G~v~vpl~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~--~~~~~~~---~~~~~---~~ 166 (516)
T PRK13383 103 FAVGLLGADVVPISTEFRSDA-------LAAALRAHHISTVVADNEFAERIAGAD-DA--VAVIDPA---TAGAE---ES 166 (516)
T ss_pred HHHHHhCeEEEEcCccCCHHH-------HHHHHhcCCCCEEEEchhHHHHHHhhh-cc--eEEeccc---hhhhh---cC
Confidence 999999999999999999888 889999999999999876544332110 00 0001100 00000 00
Q ss_pred ccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHH--HHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceE
Q 037878 628 CFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN--VKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTA 705 (2280)
Q Consensus 628 ~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~--~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~ 705 (2280)
...+..+++.++|+|||||||+||||+++|+..... .......+++..+++++..+|++|.+++. .++.++..|+++
T Consensus 167 ~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~ 245 (516)
T PRK13383 167 GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGGTV 245 (516)
T ss_pred CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCCEE
Confidence 011223467789999999999999999999853221 12223456778899999999999999984 567788999998
Q ss_pred EEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcC
Q 037878 706 ILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785 (2280)
Q Consensus 706 vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~ 785 (2280)
++... .++..+++.++++++|.+..+|.++..+.+...... ...+++++|.+++||+++++++.++|.+.+
T Consensus 246 ~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-- 316 (516)
T PRK13383 246 LTHRH----FDAEAALAQASLHRADAFTAVPVVLARILELPPRVR---ARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-- 316 (516)
T ss_pred EECCC----CCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc---ccCCCCceEEEEECCCCCCHHHHHHHHHHc--
Confidence 77542 378999999999999999999999988765432211 113578999999999999999999999875
Q ss_pred CCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCc
Q 037878 786 FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSA 865 (2280)
Q Consensus 786 ~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v 865 (2280)
+..+++.||+||++..+...... . ....+++|+|+|+++++|+|+++ ..+++|+.|||+++|+.+
T Consensus 317 ----g~~v~~~YG~tE~~~~~~~~~~~-~--------~~~~~~~G~~~~~~~~~i~d~~~--~~~~~g~~Gel~v~g~~~ 381 (516)
T PRK13383 317 ----GDILYNGYGSTEVGIGALATPAD-L--------RDAPETVGKPVAGCPVRILDRNN--RPVGPRVTGRIFVGGELA 381 (516)
T ss_pred ----Cchhhhcccccccccceeccccc-c--------ccCCCcccCCCCCcEEEEECCCC--CCCCCCCceEEEEecCcc
Confidence 45699999999998654432211 0 11236789999999999999775 345789999999999999
Q ss_pred ccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCcee
Q 037878 866 GIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCC 944 (2280)
Q Consensus 866 ~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~a 944 (2280)
+.||++++. +.+ .++||+|||+++++ ||+++++||+||+||++|++|+|.|||++|.++|+|.+ +
T Consensus 382 ~~~Y~~~~~---~~~--------~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~---~ 447 (516)
T PRK13383 382 GTRYTDGGG---KAV--------VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVAD---N 447 (516)
T ss_pred cccccCCch---hhe--------ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeE---E
Confidence 999998753 112 14899999999997 99999999999999999999999999999999999865 8
Q ss_pred EEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccch
Q 037878 945 AVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023 (2280)
Q Consensus 945 aVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR 1023 (2280)
++++++++..+ +....++.. .++.. ...++.+.+++++.. ++.|. .+..+++||+|.+||++|
T Consensus 448 ~vv~~~~~~~g----------~~~~~~v~~--~~~~~~~~~~l~~~~~~~l~~-~~~p~---~i~~v~~iP~t~~gKi~r 511 (516)
T PRK13383 448 AVIGVPDERFG----------HRLAAFVVL--HPGSGVDAAQLRDYLKDRVSR-FEQPR---DINIVSSIPRNPTGKVLR 511 (516)
T ss_pred EEEeccccccC----------ceEEEEEEE--CCCCCCCHHHHHHHHHHhccc-CCCCc---EEEEeCCCCCCCCCcCcH
Confidence 88887765322 222333322 22222 235667777777643 55443 444458999999999999
Q ss_pred HHH
Q 037878 1024 FEC 1026 (2280)
Q Consensus 1024 ~~L 1026 (2280)
++|
T Consensus 512 ~~L 514 (516)
T PRK13383 512 KEL 514 (516)
T ss_pred HHh
Confidence 874
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=517.16 Aligned_cols=475 Identities=20% Similarity=0.283 Sum_probs=355.8
Q ss_pred eeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHH
Q 037878 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENIS 580 (2280)
Q Consensus 501 ~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il 580 (2280)
+.+||+||.++++++|+.|.++ |+++||+|+++++|++++++++|||+++|++++|+++..+.++ +..++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~---g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~-------~~~~~ 79 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRAL---GLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAE-------IAYIV 79 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHH-------HHHHH
Confidence 5799999999999999999998 8999999999999999999999999999999999999998887 88999
Q ss_pred hhcCCeEEEEccccchhhccC--CCC-CCCccccc-ccccc--ccccccccccccCCCCCCCeEEEEeccCCCCCceEEE
Q 037878 581 KSCGAVAILSTIGYHSAVRVG--SWP-NLPWLHTD-SWVKN--SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVM 654 (2280)
Q Consensus 581 ~~~~~~~vl~~~~~~~~~~~~--~~~-~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~ 654 (2280)
++++++.++++.......... ..+ ....+... ..... .................++.++++|||||||.||||+
T Consensus 80 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~ 159 (502)
T PRK08276 80 DDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIK 159 (502)
T ss_pred hcCCCCEEEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcCCCCCCCCCCcceEEEECCCCCCCCceEE
Confidence 999999999986554332110 001 11111000 00000 0000000001112235577899999999999999999
Q ss_pred EchHHHHHHH------HHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcc
Q 037878 655 ITHGGLIHNV------KLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYR 728 (2280)
Q Consensus 655 ~tH~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~ 728 (2280)
++|+++.... ...........++++++++|++|.+++... +.++..|+++++.+. .+|..+++.+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~ 234 (502)
T PRK08276 160 RPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFG-MSALALGGTVVVMEK----FDAEEALALIERYR 234 (502)
T ss_pred EccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHH-HHHHhccceEEEcCC----CCHHHHHHHHHHhC
Confidence 9988754322 222222223578899999999999987544 568889999887653 38999999999999
Q ss_pred eeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceec
Q 037878 729 ATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC 808 (2280)
Q Consensus 729 vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~ 808 (2280)
+|++.++|+++..+.+...... ...+++++|.+++|||+++.++.+++.+.+ +..+++.||+||++.+++.
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~~---~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~------~~~~~~~yG~tE~~~~~~~ 305 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPEEVR---ARYDVSSLRVAIHAAAPCPVEVKRAMIDWW------GPIIHEYYASSEGGGVTVI 305 (502)
T ss_pred CeEEEehHHHHHHHHhCccccC---CCCCcccceEEEecCCCCCHHHHHHHHHHh------CcHhhhhcccccccceeEe
Confidence 9999999999888875432211 235788999999999999999999998864 3568999999999875543
Q ss_pred ccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCC
Q 037878 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNR 888 (2280)
Q Consensus 809 ~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~ 888 (2280)
..... ....+++|+|+ +.+++|+|+++ .+++.|+.|||+++|+.++.||+++|+.+.+.|.+
T Consensus 306 ~~~~~---------~~~~~~~G~~~-~~~~~i~d~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------ 367 (502)
T PRK08276 306 TSEDW---------LAHPGSVGKAV-LGEVRILDEDG--NELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNP------ 367 (502)
T ss_pred cCccc---------cccCCCcceec-ccEEEEECCCC--CCCcCCCceEEEEECCCccchhcCCHHHHHHHhcC------
Confidence 22110 11236789999 88999999764 35579999999999999999999999999998864
Q ss_pred CCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCc
Q 037878 889 GRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQ 967 (2280)
Q Consensus 889 ~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~ 967 (2280)
++||+|||+++++ ||.+++.||+||++|++|++|++.|||.+|+++|+|.+ |+|++..++..+ +.
T Consensus 368 -~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~---~~v~~~~~~~~~----------~~ 433 (502)
T PRK08276 368 -HGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVAD---VAVFGVPDEEMG----------ER 433 (502)
T ss_pred -CCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcce---EEEEeCCCcccC----------ce
Confidence 3899999999996 99999999999999999999999999999999999865 888887654322 12
Q ss_pred eEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 968 VGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 968 ~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
. +++++..++.....++.+.+++.+.+++...+.|..++.++++|+|+|||++|++|++.+.++
T Consensus 434 ~--~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 497 (502)
T PRK08276 434 V--KAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497 (502)
T ss_pred E--EEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence 2 222223333223333344455555544444445556666799999999999999999987544
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-48 Score=514.28 Aligned_cols=486 Identities=20% Similarity=0.275 Sum_probs=359.1
Q ss_pred cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCC
Q 037878 484 TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563 (2280)
Q Consensus 484 ~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~ 563 (2280)
.|+++|+.+.++ + +.+||.||.++++++|+.|.+. |+++|++|+++++|+++++++++||+++|++++|+++.
T Consensus 10 ~p~~~a~~~~~~-~---~~~ty~~l~~~~~~la~~L~~~---g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 10 TPDKPAVIMAST-G---EVVTYRELDERSNRLAHLFRSL---GLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred CCCceEEEecCC-C---CEeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 488999876433 2 4799999999999999999998 89999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-ccccc---cccc--cccccccccccccCCCCCC
Q 037878 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTD---SWVK--NSKNLLAENVVCFTESQPD 635 (2280)
Q Consensus 564 ~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~ 635 (2280)
.+.++ +.+++++++++.++++.......... ..+... .+... .... ........ .......+.+
T Consensus 83 ~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 154 (511)
T PRK13391 83 LTPAE-------AAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAG-LPATPIADES 154 (511)
T ss_pred cCHHH-------HHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcC-CCCCCCCCcc
Confidence 98887 88999999999999986543322100 001100 00000 0000 00000000 0011112344
Q ss_pred CeEEEEeccCCCCCceEEEE--chHHHHH---HHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCc
Q 037878 636 DLCFLQFTSGSTGDAKGVMI--THGGLIH---NVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSP 710 (2280)
Q Consensus 636 d~a~IiyTSGSTG~PKgV~~--tH~~l~~---~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~ 710 (2280)
+.++|+|||||||.||||++ +|.++.. ........+++.+++++++.+|++|.+++. ..+.++..|+++++.+.
T Consensus 155 ~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~~~~~~~ 233 (511)
T PRK13391 155 LGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVMEH 233 (511)
T ss_pred cccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcCceEEECCC
Confidence 67999999999999999995 4666533 234445667788899999999999998874 55678888998888753
Q ss_pred cccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCC
Q 037878 711 LTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQ 790 (2280)
Q Consensus 711 ~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~ 790 (2280)
.++..+++.++++++|++..+|+++..+.+...... ...+++++|.+++||+++++++.+++.+.+ +
T Consensus 234 ----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~------g 300 (511)
T PRK13391 234 ----FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---DKYDLSSLEVAIHAAAPCPPQVKEQMIDWW------G 300 (511)
T ss_pred ----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc---ccCCccceeEEEEccCCCCHHHHHHHHHHc------C
Confidence 389999999999999999999999887764322111 124678999999999999999999998764 4
Q ss_pred cccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccC
Q 037878 791 GVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYW 870 (2280)
Q Consensus 791 ~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~ 870 (2280)
..+++.||+||++.++...... . ....+++|+|+++ .++|+|+++ .+++.|+.|||+++|+ ++.||+
T Consensus 301 ~~v~~~YG~tE~~~~~~~~~~~-~--------~~~~~~vG~~~~g-~~~i~d~~~--~~~~~g~~Gel~~~g~-~~~gy~ 367 (511)
T PRK13391 301 PIIHEYYAATEGLGFTACDSEE-W--------LAHPGTVGRAMFG-DLHILDDDG--AELPPGEPGTIWFEGG-RPFEYL 367 (511)
T ss_pred CceeeeeccccccceEEecCcc-c--------cccCCCcCCcccc-eEEEECCCC--CCCCCCCceEEEEecC-cceEEc
Confidence 5699999999998765432111 0 1124678999999 699999765 4457899999999999 899999
Q ss_pred CCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEec
Q 037878 871 GREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGV 949 (2280)
Q Consensus 871 ~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~ 949 (2280)
++|+.+++.|..+ ++||+|||+|+++ ||.++|.||.||++|++|++|+|.|||++|.+||.|.+ |+|++.
T Consensus 368 ~~~~~~~~~~~~~------~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~---~~v~~~ 438 (511)
T PRK13391 368 NDPAKTAEARHPD------GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVAD---AAVFGV 438 (511)
T ss_pred CChhHhHHhhccC------CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcce---EEEEec
Confidence 9999999887532 4899999999997 99999999999999999999999999999999999865 888887
Q ss_pred cccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 950 PEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
+++..+ +....++. ..++....+++.+.+++.+.++++....|..+..++++|+|++||++|+.|++.
T Consensus 439 ~~~~~g----------~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~ 506 (511)
T PRK13391 439 PNEDLG----------EEVKAVVQ--PVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDR 506 (511)
T ss_pred CCcccC----------ceeEEEEE--ECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHH
Confidence 765432 22222222 222221222223334444443333334445556669999999999999999988
Q ss_pred hhc
Q 037878 1030 FVD 1032 (2280)
Q Consensus 1030 ~~~ 1032 (2280)
|..
T Consensus 507 ~~~ 509 (511)
T PRK13391 507 YWG 509 (511)
T ss_pred hhc
Confidence 754
|
|
| >cd08152 y4iL_like Catalase-like heme-binding proteins similar to the uncharacterized y4iL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=485.02 Aligned_cols=271 Identities=20% Similarity=0.280 Sum_probs=227.7
Q ss_pred cccccccccc-cceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCC-CCcccccccccEEEeeccCCC------CC
Q 037878 1713 KSRYFHRIGV-SGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSA-DDDARIDARGAAIRIFSDLNG------NT 1784 (2280)
Q Consensus 1713 ~~R~~Hakg~-~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~-~~D~~~~~rG~Aik~~~~~~~------~~ 1784 (2280)
..|.+||||+ |++|+|+|++|+|+++++++|++|++|||++||||++++ .+|..+|+|||||||++. +| .+
T Consensus 3 ~~R~~HaKg~G~v~G~F~v~~~~~~~~~~~~F~~~~~~pv~vRfS~~~~~~~~D~~~~~RG~AiK~~~~-~G~~l~~~~~ 81 (305)
T cd08152 3 ALRDAHAKSHGCLKAEFTVLDDLPPELAQGLFAEPGTYPAVIRFSNAPGDILDDSVPDPRGMAIKVLGV-PGEKLLPEED 81 (305)
T ss_pred ccccccCcccccceEEEEECCCchHHHhhhhcCCCCeEEEEEEecCCCCCCCCcccCCCCeEEEEEEcC-cccccccccC
Confidence 5799999999 589999999999999999999989999999999999887 559999999999999985 33 35
Q ss_pred CcceeeecccccccccCChhhHHHHHhhccchh------hhhhcc-Ccchhhhhhhc----------ccCCCccccceee
Q 037878 1785 SSLLDLTLKTGNAFYARTIGDFATWLVCGLAAR------EEHVKR-VPHIRDAVWKS----------LRLSDSYAEMHYY 1847 (2280)
Q Consensus 1785 ~~~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~----------~~~p~s~~~~~y~ 1847 (2280)
+++|||+|||+|+||++|+++|++|+++..+.. ..++.. ++.....+... .+.|.||++++||
T Consensus 82 ~~~~D~v~~n~pvF~~~d~~~f~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~y~ 161 (305)
T cd08152 82 ATTQDFVLVNHPVFFARDAKDYLALLKLLARTTSLPDGAKAALSAPLRGALRVLEAAGGESPTLKLGGHPPAHPLGETYW 161 (305)
T ss_pred CcccceeeecCceeecCCHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcccccee
Confidence 789999999999999999999999998865321 112222 33333333222 2368999999999
Q ss_pred eeeeEEEEEeCCcEEEEEEEeecCCCCCC-CCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEE
Q 037878 1848 SNICRLFRFTDGQEMYVKFKLRPYDESIG-EDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIF 1926 (2280)
Q Consensus 1848 s~~~~~~~~~~g~~~~vk~~~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l 1926 (2280)
|+|+|+|+|. +|||+++|.++... ++.+++ .+.+++|||+++|.+||+++ +++|+|
T Consensus 162 s~~~fr~g~~-----~vk~~~~P~~~~~~~l~~~~~-----------------~~~~~~d~L~~~L~~~l~~g-~~~f~l 218 (305)
T cd08152 162 SQAPYRFGDY-----VAKYSVVPASPALPALTGKEL-----------------DLTDDPDALREALADFLAEN-DAEFEF 218 (305)
T ss_pred cccceeEcce-----eEEEEEEECCCccccCchhhh-----------------hcCCCccHHHHHHHHHHHhC-CceEEE
Confidence 9999999754 99999999654432 122111 13457899999999999997 699999
Q ss_pred EEEEeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCC----h--hhhccccccCCcCCCccccccCCCccccc
Q 037878 1927 QLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLS----T--EESEKLEFNPYLKCNEIDVIPATTSSQSA 2000 (2280)
Q Consensus 1927 ~vQ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~----~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d 2000 (2280)
+||+++++|.||++ |+||+|||+++|+++||+|+|+++.. + +.||+++|||||+++||+|++
T Consensus 219 ~vQl~~~~d~~pi~----D~tv~W~e~~~p~i~vg~l~i~~~~~~~~~~~~~~~~~l~F~P~~~~~g~~p~g-------- 286 (305)
T cd08152 219 RIQLCTDLEKMPIE----DASVEWPEALSPFVPVATITIPPQDFDSPARQRAFDDNLSFNPWHGLAEHRPLG-------- 286 (305)
T ss_pred EEEecCchhhCCCC----cCCccCCCccCCCeEEEEEEECCCCccCHHHHhhhhhccccCccccccccCcCh--------
Confidence 99999999988877 99999999999999999999998765 2 579999999999999999998
Q ss_pred ccccchhhHHHhhhHhhcC
Q 037878 2001 SIDHGRSLIYEICQHLRNG 2019 (2280)
Q Consensus 2001 ~i~~~R~~~Y~~s~~~R~~ 2019 (2280)
||+++|+.||..|+++|+.
T Consensus 287 ~i~r~R~~vY~~S~~~R~~ 305 (305)
T cd08152 287 SINRARKAVYEASSAFRHE 305 (305)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999974
|
Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin. |
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=512.50 Aligned_cols=496 Identities=21% Similarity=0.268 Sum_probs=366.4
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
++.+++++.+++. |+++|+.+.+ +.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++|
T Consensus 4 ~l~~~~~~~a~~~--p~~~a~~~~~------~~~ty~el~~~~~~la~~L~~~---g~~~~~~v~v~~~n~~~~~~~~~a 72 (533)
T PRK07798 4 NIADLFEAVADAV--PDRVALVCGD------RRLTYAELEERANRLAHYLIAQ---GLGPGDHVGIYARNRIEYVEAMLG 72 (533)
T ss_pred cHHHHHHHHHHhC--CCceEEEECC------ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHH
Confidence 6788999999874 8999987632 5899999999999999999988 899999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-cccccccccc--------c
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTDSWVKN--------S 618 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~--------~ 618 (2280)
|+++|++++|+++..+.++ +.+++++++++.++++.......... ..+... .+..++.... .
T Consensus 73 ~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (533)
T PRK07798 73 AFKARAVPVNVNYRYVEDE-------LRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDY 145 (533)
T ss_pred HHhcCeEEEecCcCCCHHH-------HHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccH
Confidence 9999999999999999887 88999999999999986543322211 001111 1111100000 0
Q ss_pred cccccc-cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHc---------CC------CCCcEEEEE
Q 037878 619 KNLLAE-NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY---------KS------TSKTVLVSW 682 (2280)
Q Consensus 619 ~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~---------~~------~~~d~~l~~ 682 (2280)
.+.... ..........+|.++|+|||||||.||||+++|+++...+......+ .+ ..+++++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 146 EDALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHHHhccCCcCCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 000000 00011112234567999999999999999999999876554432221 11 567899999
Q ss_pred cCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHH-HHHHHHhcccccccccCCCCc
Q 037878 683 LPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE-LMVRRLESSKDKVRSFDLSSM 761 (2280)
Q Consensus 683 ~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~-~l~~~~~~~~~~~~~~~l~~L 761 (2280)
+|++|+++++ .++.++..|+++++.+... .+|..+++.++++++|++..+|..+. .+.+.+... ...+++++
T Consensus 226 ~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~----~~~~~~~l 298 (533)
T PRK07798 226 PPLMHGAGQW-AAFAALFSGQTVVLLPDVR--FDADEVWRTIEREKVNVITIVGDAMARPLLDALEAR----GPYDLSSL 298 (533)
T ss_pred cchhhhhhHH-HHHHHHhcCceEEEecCCC--cCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhccc----ccCCCCce
Confidence 9999999985 7889999999999987443 38999999999999999988776553 344433311 12467899
Q ss_pred cEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEE
Q 037878 762 KFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIV 841 (2280)
Q Consensus 762 r~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Iv 841 (2280)
|.+++||+++++++.++|.+.+ ++..+++.||+||++..++...... ....+. +.+.++..++|+
T Consensus 299 ~~i~~gG~~~~~~~~~~~~~~~-----~~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~g~-~~~~~~~~~~i~ 363 (533)
T PRK07798 299 FAIASGGALFSPSVKEALLELL-----PNVVLTDSIGSSETGFGGSGTVAKG---------AVHTGG-PRFTIGPRTVVL 363 (533)
T ss_pred EEEEECCCCCCHHHHHHHHHHc-----CCCeEEeeecccccccccccCCCCC---------CccCCC-CccCCCceEEEE
Confidence 9999999999999999998864 4678999999999865443221110 111111 267789999999
Q ss_pred cCCCCcccCCCCCe--eEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE
Q 037878 842 NPETSEEIGEPGKE--GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV 918 (2280)
Q Consensus 842 d~~~~~~~~p~G~~--GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi 918 (2280)
|+++. .++.|+. |||+. ++.++.||+++|+.|+++|.. .++.+||+|||+++++ ||.++++||+||+||+
T Consensus 364 ~~~~~--~~~~g~~~~g~l~~-~~~~~~gy~~~~~~t~~~f~~----~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~ 436 (533)
T PRK07798 364 DEDGN--PVEPGSGEIGWIAR-RGHIPLGYYKDPEKTAETFPT----IDGVRYAIPGDRARVEADGTITLLGRGSVCINT 436 (533)
T ss_pred CCCCC--CCCCCCCCeeEEEe-ecCccccccCChhhhHHhhcc----CCCCceEEcCcEEEEcCCCcEEEEccccceEec
Confidence 98764 4467877 77765 567999999999999999864 2456899999999997 9999999999999999
Q ss_pred CCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHh
Q 037878 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEE 997 (2280)
Q Consensus 919 ~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~ 997 (2280)
+|++|+|.|||++|.++|+|.+ ++|++.+++..+ .....++. ..++. ....++.+.++++++.
T Consensus 437 ~G~~v~~~eIE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v~--~~~~~~~~~~~l~~~l~~~l~~- 500 (533)
T PRK07798 437 GGEKVFPEEVEEALKAHPDVAD---ALVVGVPDERWG----------QEVVAVVQ--LREGARPDLAELRAHCRSSLAG- 500 (533)
T ss_pred CCEEeCHHHHHHHHHhCcccee---EEEEeccCcccC----------ceEEEEEE--ECCCCCCCHHHHHHHHhhhccc-
Confidence 9999999999999999999865 788887665322 22223332 22332 2235566666666653
Q ss_pred cCcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 998 HGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 998 ~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
+++ |..++.+++||+|.+||+||+.|+++..
T Consensus 501 ~~~---P~~i~~~~~iP~t~~GK~~~~~~~~~~~ 531 (533)
T PRK07798 501 YKV---PRAIWFVDEVQRSPAGKADYRWAKEQAA 531 (533)
T ss_pred CCC---CeEEEEcccCCCCCcchhhHHHHhhhhc
Confidence 444 4455566999999999999999988754
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=509.74 Aligned_cols=469 Identities=21% Similarity=0.280 Sum_probs=353.4
Q ss_pred eeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHH
Q 037878 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENIS 580 (2280)
Q Consensus 501 ~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il 580 (2280)
+.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|++++|+++..+.++ +..++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~---g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~-------~~~~l 79 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAAL---GVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE-------IAYIL 79 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH-------HHHHH
Confidence 5899999999999999999998 8999999999999999999999999999999999999999888 88999
Q ss_pred hhcCCeEEEEccccchhhccCCCCCCCccccccc---c------cc-------c--cccccccccccCCCCCCCeEEEEe
Q 037878 581 KSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSW---V------KN-------S--KNLLAENVVCFTESQPDDLCFLQF 642 (2280)
Q Consensus 581 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~-------~--~~~~~~~~~~~~~~~~~d~a~Iiy 642 (2280)
++++++.++++......+..........+..... . .. . .+.............++++++++|
T Consensus 80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 159 (509)
T PRK12406 80 EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIY 159 (509)
T ss_pred hccCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEE
Confidence 9999999998765443321110000000000000 0 00 0 000000001122345789999999
Q ss_pred ccCCCCCceEEEEchHHH---HHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHH
Q 037878 643 TSGSTGDAKGVMITHGGL---IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLL 719 (2280)
Q Consensus 643 TSGSTG~PKgV~~tH~~l---~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~ 719 (2280)
||||||.||||+++|.+. ..........+++.+++++++.+|++|..+.... +.++..|+++++.+. .+|..
T Consensus 160 TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~----~~~~~ 234 (509)
T PRK12406 160 TSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQPR----FDPEE 234 (509)
T ss_pred CCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHH-HHHHhhheEEEEccC----CCHHH
Confidence 999999999999976653 3434445567788999999999999999886544 446778888887653 38999
Q ss_pred HHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCc
Q 037878 720 WLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799 (2280)
Q Consensus 720 l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~ 799 (2280)
+++.++++++|++..+|+++..+++...... ...+++++|.+++||+++++++.+++.+.+ ++.+++.||+
T Consensus 235 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~------~~~~~~~YG~ 305 (509)
T PRK12406 235 LLQLIERHRITHMHMVPTMFIRLLKLPEEVR---AKYDVSSLRHVIHAAAPCPADVKRAMIEWW------GPVIYEYYGS 305 (509)
T ss_pred HHHHHHHcCCeEEEccHHHHHHHHhCchhhc---ccCCCCceeEEEEcCCCCCHHHHHHHHHHc------CCcEEeeccc
Confidence 9999999999999999999988765332211 225678999999999999999999998864 4569999999
Q ss_pred cccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCccc-ccCCCchhhHH
Q 037878 800 AENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI-GYWGREELSQI 878 (2280)
Q Consensus 800 TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~-GY~~~p~~t~~ 878 (2280)
||++.+++..... .....+++|.|+++++++|+|+++ ..++.|+.|||+++|++++. ||+++|+.+++
T Consensus 306 tE~~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~d~~~--~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~ 374 (509)
T PRK12406 306 TESGAVTFATSED---------ALSHPGTVGKAAPGAELRFVDEDG--RPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAE 374 (509)
T ss_pred cccCceEecCccc---------ccccCCCcCccCCCcEEEEECCCC--CCCCCCCceEEEEECCccccccccCCchhccc
Confidence 9998765432111 011236789999999999999764 44579999999999999875 99999998876
Q ss_pred HHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccc
Q 037878 879 TFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTK 957 (2280)
Q Consensus 879 ~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~ 957 (2280)
.+. ++||+|||+++++ ||.++++||.||+||++|+||+|.|||++|+++++|.+ +++++.+++..+
T Consensus 375 ~~~--------~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~---~~v~~~~~~~~~-- 441 (509)
T PRK12406 375 IDR--------GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHD---CAVFGIPDAEFG-- 441 (509)
T ss_pred ccC--------CCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeE---EEEEeeeccccC--
Confidence 542 4899999999996 99999999999999999999999999999999999875 788877654321
Q ss_pred cccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhh
Q 037878 958 GISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 958 ~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
.. .+++++..++.. ..+++.+.+++++.+ ++.| ..++.+++||+|.+||++|++|++.+.
T Consensus 442 --------~~--~~~~v~~~~~~~~~~~~l~~~l~~~l~~-~~~P---~~i~~~~~iP~t~~GK~~r~~L~~~~~ 502 (509)
T PRK12406 442 --------EA--LMAVVEPQPGATLDEADIRAQLKARLAG-YKVP---KHIEIMAELPREDSGKIFKRRLRDPYW 502 (509)
T ss_pred --------ce--eEEEEEECCCCCCCHHHHHHHHHHhccc-CCCC---cEEEEeccCCCCCccchhHHHHHHHHH
Confidence 11 222222232222 224566666666554 4444 445556999999999999999988764
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=504.02 Aligned_cols=444 Identities=18% Similarity=0.235 Sum_probs=347.5
Q ss_pred HhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCC
Q 037878 476 KHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKV 555 (2280)
Q Consensus 476 ~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa 555 (2280)
+.++++. |+++|+... + +.+||+||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~a~~~--~~~~a~~~~---~---~~~ty~el~~~~~~~a~~L~~~---g~~~~~~v~l~~~~~~~~~~~~la~~~~G~ 78 (458)
T PRK09029 10 RHWAQVR--PQAIALRLN---D---EVLTWQQLCARIDQLAAGFAQQ---GVVEGSGVALRGKNSPETLLAYLALLQCGA 78 (458)
T ss_pred HHHHHhC--CCceeeecC---C---cceeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEecCCCHHHHHHHHHHHHcCC
Confidence 4556553 789998642 1 5799999999999999999998 899999999999999999999999999999
Q ss_pred eEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccCCCCCC
Q 037878 556 LPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPD 635 (2280)
Q Consensus 556 ~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (2280)
+++|+++..+.++ +..++++++++.++++.+... .. ........ . ..........++
T Consensus 79 ~~v~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~-~~-----~~~~~~~~----~------~~~~~~~~~~~~ 135 (458)
T PRK09029 79 RVLPLNPQLPQPL-------LEELLPSLTLDFALVLEGENT-FS-----ALTSLHLQ----L------VEGAHAVAWQPQ 135 (458)
T ss_pred EEeecCCCCCHHH-------HHHHHHhcCCCEEEEcCcccc-hh-----hccccccc----c------ccccCcccCCCC
Confidence 9999999999888 788999999999998755321 10 00000000 0 000112234678
Q ss_pred CeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCcccccc
Q 037878 636 DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIK 715 (2280)
Q Consensus 636 d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~ 715 (2280)
++++++|||||||.||||++||++++..+......++..++++++..+|++|.+++ ..++.++..|+++++.+.
T Consensus 136 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~----- 209 (458)
T PRK09029 136 RLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK----- 209 (458)
T ss_pred CeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh-----
Confidence 99999999999999999999999999998888888899999999999999999997 456778999999887542
Q ss_pred CHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCccccc
Q 037878 716 NPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795 (2280)
Q Consensus 716 ~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n 795 (2280)
..+++.+ .++|....+|+++..+...... ..++|.+++||+++++++.+++.+. +..+++
T Consensus 210 --~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------~~~l~~i~~gG~~~~~~~~~~~~~~-------g~~~~~ 269 (458)
T PRK09029 210 --QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------PLSLKAVLLGGAAIPVELTEQAEQQ-------GIRCWC 269 (458)
T ss_pred --HHHHHHH--hhceeeecChHHHHHHHhcccc---------CCcceEEEECCCCCCHHHHHHHHHc-------CCcEec
Confidence 3355665 3788888889988777643211 3479999999999999998888652 467999
Q ss_pred ccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchh
Q 037878 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREEL 875 (2280)
Q Consensus 796 ~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~ 875 (2280)
.||+||++...+..... ...++|+|+++++++|+| |||+|+|+.++.||+++|+.
T Consensus 270 ~YG~tE~~~~~~~~~~~------------~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~gY~~~~~~ 324 (458)
T PRK09029 270 GYGLTEMASTVCAKRAD------------GLAGVGSPLPGREVKLVD-------------GEIWLRGASLALGYWRQGQL 324 (458)
T ss_pred cccccccCcceeccCCC------------CCCCCCCCCCCCEEEEeC-------------CEEEEecCceeeeeecCccc
Confidence 99999998654432111 013489999999999875 89999999999999999987
Q ss_pred hHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccc
Q 037878 876 SQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLS 955 (2280)
Q Consensus 876 t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~ 955 (2280)
+... .+++||+|||+|+++||.++|+||+||+||++|+||+|.|||++|.++|+|.+ |+|++.+++..+
T Consensus 325 ~~~~--------~~~~~~~TGD~~~~~~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~---~~v~~~~~~~~~ 393 (458)
T PRK09029 325 VPLV--------NDEGWFATRDRGEWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQ---VFVVPVADAEFG 393 (458)
T ss_pred cccc--------cCCCccCCCCcEEEeCCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcce---EEEEccCCcccC
Confidence 7532 23589999999999999999999999999999999999999999999999865 888888776433
Q ss_pred cccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 956 TKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 956 ~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+...+++.. . ......++.+.++++++. ++.| ..++.++++|+|.+||++|+.|++++.+
T Consensus 394 ----------~~~~a~v~~--~-~~~~~~~l~~~~~~~l~~-~~~P---~~~~~~~~~p~t~~gKi~r~~L~~~~~~ 453 (458)
T PRK09029 394 ----------QRPVAVVES--D-SEAAVVNLAEWLQDKLAR-FQQP---VAYYLLPPELKNGGIKISRQALKEWVAQ 453 (458)
T ss_pred ----------ceEEEEEEc--C-cccCHHHHHHHHHhhchh-ccCC---eEEEEecccccCcCCCcCHHHHHHHHHh
Confidence 222233222 2 122335667777776664 4444 4455568899999999999999887653
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=508.26 Aligned_cols=500 Identities=20% Similarity=0.231 Sum_probs=359.4
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.+..++++..++. +|+++|+.+.+ +.+||+||.++++++|+.|.+. |+++||+|+++++|++++++++|
T Consensus 18 ~~~~~~~~~~~~~--~~~~~a~~~~~------~~~ty~~L~~~~~~~a~~L~~~---g~~~g~~v~i~~~~~~~~~~~~l 86 (545)
T PRK08162 18 LTPLSFLERAAEV--YPDRPAVIHGD------RRRTWAETYARCRRLASALARR---GIGRGDTVAVLLPNIPAMVEAHF 86 (545)
T ss_pred CCHHHHHHHHHHH--CCCCeEEEECC------eEEEHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCchHHHHHHH
Confidence 3566778777765 48999987632 4799999999999999999988 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCC--CCccccccc-c------c-
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPN--LPWLHTDSW-V------K- 616 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~--~~~~~~~~~-~------~- 616 (2280)
||+++|++++|+++..+.++ +..++++++++.++++.+....+... ..+. ...+..... . .
T Consensus 87 A~~~~G~~~vpl~~~~~~~~-------~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (545)
T PRK08162 87 GVPMAGAVLNTLNTRLDAAS-------IAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGA 159 (545)
T ss_pred HHHHhCcEEeccccccChHH-------HHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCccc
Confidence 99999999999999999888 88999999999999987654332210 0000 000000000 0 0
Q ss_pred -cccccccc--cc-cccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHH
Q 037878 617 -NSKNLLAE--NV-VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLI 692 (2280)
Q Consensus 617 -~~~~~~~~--~~-~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~ 692 (2280)
........ .. ....+.+.+++++|+|||||||.||||+++|+++...+......+.+..++++++.+|++|..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~ 239 (545)
T PRK08162 160 LDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWC 239 (545)
T ss_pred ccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHH
Confidence 00000000 00 001122345799999999999999999999999877766666667788889999999999999876
Q ss_pred HHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCC
Q 037878 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVR 772 (2280)
Q Consensus 693 ~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~ 772 (2280)
..++..+. |+++++... .+|..+++.++++++|++.++|.++..+++...... ..+.+.+.++++|++++
T Consensus 240 ~~~~~~~~-~g~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~~~~~~~~g~~~~ 309 (545)
T PRK08162 240 FPWTVAAR-AGTNVCLRK----VDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR-----AGIDHPVHAMVAGAAPP 309 (545)
T ss_pred HHHHHHHH-ccEEEEeCC----CCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc-----cCCccceEEEECCCCCC
Confidence 55555554 445444432 389999999999999999999999998875432211 23445677789999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCccccccceeccc-CCCCceeecCCCceeeccccCCCC-CceEEEEcCCCCcccC
Q 037878 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAY-GQGKPIILDWQGRVCCGYVDQNDP-DVDIRIVNPETSEEIG 850 (2280)
Q Consensus 773 ~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~-~~~~~~~~~~~g~~~~g~vG~p~p-g~~v~Ivd~~~~~~~~ 850 (2280)
+++.+++.+. ++++++.||+||++..++... ................+.+|.+.+ +..++|+|++++..+.
T Consensus 310 ~~~~~~~~~~-------~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~ 382 (545)
T PRK08162 310 AAVIAKMEEI-------GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVP 382 (545)
T ss_pred HHHHHHHHHh-------CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccC
Confidence 9998887653 467999999999864433321 110000000000111234555554 3468899976554443
Q ss_pred CCC-CeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHH
Q 037878 851 EPG-KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADV 928 (2280)
Q Consensus 851 p~G-~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EI 928 (2280)
+.| +.|||+|+|+.++.||+++++.|++.|. ++||+|||+++++ ||.++|+||.||+||++|+||+|.||
T Consensus 383 ~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~--------~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eI 454 (545)
T PRK08162 383 ADGETIGEIMFRGNIVMKGYLKNPKATEEAFA--------GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEV 454 (545)
T ss_pred CCCCceeEEEEecCcchhhhcCChhhhHHHhh--------CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHH
Confidence 334 4699999999999999999999999985 3799999999997 99999999999999999999999999
Q ss_pred HHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEE
Q 037878 929 EKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKL 1007 (2280)
Q Consensus 929 E~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~l 1007 (2280)
|++|.++|+|.+ ++|++.+++..+ .....++. ..++. ....++.+.+++.++. ++.|.. +
T Consensus 455 E~~l~~~~~v~~---~~vv~~~~~~~~----------~~~~~~v~--~~~~~~~~~~~l~~~~~~~l~~-~~~P~~---~ 515 (545)
T PRK08162 455 EDVLYRHPAVLV---AAVVAKPDPKWG----------EVPCAFVE--LKDGASATEEEIIAHCREHLAG-FKVPKA---V 515 (545)
T ss_pred HHHHHhCCcccE---EEEEeeeccccC----------ceEEEEEE--eCCCCCCCHHHHHHHHHHhccc-ccCCcE---E
Confidence 999999999865 888887654321 12222222 23222 2335667777776643 555533 3
Q ss_pred ecCCCccCCCCcccchHHHHHHhh
Q 037878 1008 IKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 1008 v~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
+ .++||+|+|||++|+.|++++.
T Consensus 516 ~-~~~iP~t~~gK~~r~~l~~~~~ 538 (545)
T PRK08162 516 V-FGELPKTSTGKIQKFVLREQAK 538 (545)
T ss_pred E-ecccCCCCCcCCcHHHHHHHHh
Confidence 2 2579999999999999988754
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=486.64 Aligned_cols=434 Identities=19% Similarity=0.237 Sum_probs=337.9
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhc
Q 037878 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSC 583 (2280)
Q Consensus 504 TY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~ 583 (2280)
||+||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|++++|+++..+.++ +..+++++
T Consensus 1 Ty~~l~~~~~~~a~~l~~~---g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~-------~~~~~~~~ 70 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQ---GIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENE-------RTNQLEDL 70 (436)
T ss_pred CHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHH-------HHHHHHhc
Confidence 8999999999999999998 9999999999999999999999999999999999999999887 78899999
Q ss_pred CCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHH
Q 037878 584 GAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN 663 (2280)
Q Consensus 584 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~ 663 (2280)
+++.++++....... .......... ...............+++++++|||||||.||+|+++|+++...
T Consensus 71 ~~~~~i~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~ 139 (436)
T TIGR01923 71 DVQLLLTDSLLEEKD-------FQADSLDRIE----AAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYAS 139 (436)
T ss_pred CCCEEEEcCcccccc-------eeecchHhhh----hcccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHH
Confidence 999999976532110 0000000000 00000001122345689999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHH
Q 037878 664 VKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMV 743 (2280)
Q Consensus 664 ~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~ 743 (2280)
+......+++.++|++++.+|++|..++ ..++.++..|+++++.++. ..+++.++++++|++.++|+++..+.
T Consensus 140 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~------~~~~~~l~~~~~t~~~~~P~~l~~l~ 212 (436)
T TIGR01923 140 AVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF------NQLLEMIANERVTHISLVPTQLNRLL 212 (436)
T ss_pred HHHHHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH------HHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 9888888999999999999999999887 4688999999999886542 37899999999999999999988776
Q ss_pred HHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCc
Q 037878 744 RRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGR 823 (2280)
Q Consensus 744 ~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~ 823 (2280)
+... ..+++|.+++|||++++++.+++.+. ++.++|.||+||++..++....... .
T Consensus 213 ~~~~---------~~~~l~~~~~~G~~~~~~~~~~~~~~-------~~~~~~~YG~tE~~~~~~~~~~~~~--------~ 268 (436)
T TIGR01923 213 DEGG---------HNENLRKILLGGSAIPAPLIEEAQQY-------GLPIYLSYGMTETCSQVTTATPEML--------H 268 (436)
T ss_pred hCcC---------CCCceEEEEECCCCCCHHHHHHHHHh-------CCceeeEecCCccchhccCcCcccc--------c
Confidence 4311 12679999999999999998887653 5679999999999875543321110 0
Q ss_pred eeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-
Q 037878 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII- 902 (2280)
Q Consensus 824 ~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~- 902 (2280)
.. ..+|.|+++++++|.+++ .++.|||+++|+.++.||+++++.+...+. ++||+|||+++++
T Consensus 269 ~~-~~~G~~~~~~~~~i~~~~-------~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~~~~~TGD~~~~~~ 332 (436)
T TIGR01923 269 AR-PDVGRPLAGREIKIKVDN-------KEGHGEIMVKGANLMKGYLYQGELTPAFEQ--------QGWFNTGDIGELDG 332 (436)
T ss_pred cc-cCCCccCCCcEEEEEeCC-------CCCceEEEEECCccchhhCCChhhhhhhhc--------CCCeeccceEEEcC
Confidence 11 237899999999994322 126799999999999999998887766542 4899999999997
Q ss_pred CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC
Q 037878 903 DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982 (2280)
Q Consensus 903 dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 982 (2280)
||.+++.||.||+||++|++|+|.|||++|.+++.|.+ ++|++.+++..+ ....+++.. .+ ...
T Consensus 333 dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~---~~v~~~~~~~~~----------~~~~~~v~~--~~-~~~ 396 (436)
T TIGR01923 333 EGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQE---AVVVPKPDAEWG----------QVPVAYIVS--ES-DIS 396 (436)
T ss_pred CCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeE---EEEeCCcchhcC----------CeeEEEEEE--CC-CCC
Confidence 89999999999999999999999999999999998865 777776543221 222222222 22 223
Q ss_pred CHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHH
Q 037878 983 DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFE 1025 (2280)
Q Consensus 983 ~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~ 1025 (2280)
..++.+.+++.++. +++| ..++.+++||+|++||++|++
T Consensus 397 ~~~l~~~l~~~l~~-~~~p---~~i~~~~~iP~t~~GK~~r~~ 435 (436)
T TIGR01923 397 QAKLIAYLTEKLAK-YKVP---IAFEKLDELPYNASGKILRNQ 435 (436)
T ss_pred HHHHHHHHHHhhhC-CCCC---eEEEEecCCCCCCCCceeccc
Confidence 35667777777654 4544 344556999999999999975
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=478.85 Aligned_cols=399 Identities=18% Similarity=0.226 Sum_probs=323.9
Q ss_pred eeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHH
Q 037878 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENIS 580 (2280)
Q Consensus 501 ~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il 580 (2280)
+++||+||.++++++|+.|. . |+++|++|+++++|+++++++++||+++|++++|++++.+.++ +..++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~---~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~-------~~~~~ 75 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-F---QEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEA-------AIRMA 75 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-c---CCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHH-------HHHHH
Confidence 47999999999999999985 4 7999999999999999999999999999999999999999887 78889
Q ss_pred hhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHH
Q 037878 581 KSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL 660 (2280)
Q Consensus 581 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l 660 (2280)
++++++.++++.... .. . ......++++++|+|||||||.||||++||+++
T Consensus 76 ~~~~~~~~i~~~~~~-----------~~-------~-----------~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l 126 (414)
T PRK08308 76 KRAGCHGLLYGESDF-----------TK-------L-----------EAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEI 126 (414)
T ss_pred HhCCCCEEEecCccc-----------cc-------c-----------cCCCCCCCCceEEEECCCCCCCCcEEEEehHhH
Confidence 999999999864210 00 0 001235689999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHH
Q 037878 661 IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE 740 (2280)
Q Consensus 661 ~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~ 740 (2280)
.+.+......+....+++.+..+|++|.++++..++.++..|+++++.+. .+|..+++.++++++|++.++|.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~ 202 (414)
T PRK08308 127 DREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN----KNPKFALNILRNTPQHILYAVPLMLH 202 (414)
T ss_pred HHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC----CCHHHHHHHHHHhCCeEEEcCHHHHH
Confidence 99998888888889999999999999999998889999999999988753 37899999999999999999999998
Q ss_pred HHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecC
Q 037878 741 LMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDW 820 (2280)
Q Consensus 741 ~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~ 820 (2280)
.+.+.... ..+++.+++||+++++++.++|.+. ..+++|.||+||++.++....
T Consensus 203 ~l~~~~~~---------~~~l~~~~~~G~~l~~~~~~~~~~~-------~~~~~~~YG~tE~~~~~~~~~---------- 256 (414)
T PRK08308 203 ILGRLLPG---------TFQFHAVMTSGTPLPEAWFYKLRER-------TTYMMQQYGCSEAGCVSICPD---------- 256 (414)
T ss_pred HHHhcCCc---------cccccEEEEccCCCCHHHHHHHHHh-------CChhhhccCccccCCeeecCC----------
Confidence 88653211 1368899999999999999999875 247999999999985433111
Q ss_pred CCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEE
Q 037878 821 QGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900 (2280)
Q Consensus 821 ~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr 900 (2280)
....+++|+|+|++++++.++ .|+.|||++++. ++||+|||+|+
T Consensus 257 --~~~~~~~G~p~~~~~~~~~~~--------~~~~gel~v~~~--------------------------~~~~~TGDl~~ 300 (414)
T PRK08308 257 --MKSHLDLGNPLPHVSVSAGSD--------ENAPEEIVVKMG--------------------------DKEIFTKDLGY 300 (414)
T ss_pred --CCCCCccCccCCCeEEEEecC--------CCCCceEEEEcC--------------------------CceEECCceEE
Confidence 012356899999999998763 356799999741 37999999999
Q ss_pred EE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCC
Q 037878 901 II-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDG 979 (2280)
Q Consensus 901 ~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~ 979 (2280)
++ ||.++|+||.||+||++|+||+|.|||++|.++|+|.+ |+|++.+++..+ +.+.++++ ..+
T Consensus 301 ~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~---a~v~~~~~~~~~----------~~~~~~v~--~~~- 364 (414)
T PRK08308 301 KSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQE---AVVYRGKDPVAG----------ERVKAKVI--SHE- 364 (414)
T ss_pred ECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeE---EEEEeccCCCCC----------ceEEEEEE--eCC-
Confidence 97 99999999999999999999999999999999999865 788887765322 22222222 122
Q ss_pred CCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHH
Q 037878 980 KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFE 1025 (2280)
Q Consensus 980 ~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~ 1025 (2280)
.....++.++++++++. +++| ..++.+++||+|++||+||+.
T Consensus 365 ~~~~~~l~~~l~~~l~~-~~~P---~~i~~v~~iP~t~~GKi~r~~ 406 (414)
T PRK08308 365 EIDPVQLREWCIQHLAP-YQVP---HEIESVTEIPKNANGKVSRKL 406 (414)
T ss_pred CCCHHHHHHHHHHhCcc-ccCC---cEEEEeccCCCCCCcCeehhh
Confidence 22335666777777664 4444 445556999999999999984
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=479.89 Aligned_cols=403 Identities=28% Similarity=0.442 Sum_probs=310.5
Q ss_pred HHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcC
Q 037878 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAK 554 (2280)
Q Consensus 475 l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aG 554 (2280)
|+++|++ .||++|+++ + + .+.+||+||+++++++|..|++. |+++||+|+++++|+++++++++||+++|
T Consensus 1 f~~~a~~--~pd~~a~~~-~-~---~~~~Ty~~l~~~v~~la~~L~~~---g~~~~~~V~i~~~n~~~~~~~~~A~~~~G 70 (417)
T PF00501_consen 1 FERQAQR--YPDRIALID-D-E---GRSLTYKQLYERVRKLAAALRKL---GVKKGDRVAILLPNSIEFVVAFLACLRAG 70 (417)
T ss_dssp HHHHHHH--STTSEEEEE-T-T---TEEEEHHHHHHHHHHHHHHHHHT---TSSTTSEEEEEESSSHHHHHHHHHHHHTT
T ss_pred ChhHHhh--CCCceEEEE-C-C---CEEEEHHHHHHHHHHHhhHHHHh---CCCccccccccCCccceeeeeeccccccc
Confidence 4566666 489999987 2 1 26899999999999999999987 99999999999999999999999999999
Q ss_pred CeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEE----ccccchhhccC-CC--CCCCccccc--ccccccccccccc
Q 037878 555 VLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILS----TIGYHSAVRVG-SW--PNLPWLHTD--SWVKNSKNLLAEN 625 (2280)
Q Consensus 555 a~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~----~~~~~~~~~~~-~~--~~~~~~~~~--~~~~~~~~~~~~~ 625 (2280)
++++|+++..+.+. +.+++++++++++++ +......+... .. .......++ .............
T Consensus 71 ~~~v~l~~~~~~~~-------~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (417)
T PF00501_consen 71 AIPVPLDPSLSEDE-------LRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASL 143 (417)
T ss_dssp -EEEEEETTSSHHH-------HHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHH
T ss_pred cccccccccccccc-------ccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccccc
Confidence 99999999998877 889999999999997 11111101000 00 000011111 1100000000000
Q ss_pred ccccCC--CCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHH--HHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHc
Q 037878 626 VVCFTE--SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR--KRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVG 701 (2280)
Q Consensus 626 ~~~~~~--~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~ 701 (2280)
...... ..++++++|+|||||||.||+|.++|+++++.+.... ..++.+ |++++++|++|.++++..++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~ 221 (417)
T PF00501_consen 144 SDEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFS 221 (417)
T ss_dssp CHCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHC
T ss_pred ccccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccc
Confidence 000000 1579999999999999999999999999999887764 223333 5999999999999998899999999
Q ss_pred cceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHH
Q 037878 702 GSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781 (2280)
Q Consensus 702 G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~ 781 (2280)
|+++++++.... .++..+++.++++++|++.++|.++..+++..+.. ......+++++|.+++||+++++++.+++.+
T Consensus 222 G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 299 (417)
T PF00501_consen 222 GATLVLPSPFDL-FDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKISKKDLSSLRTVISGGEPLPPDLLRRLRK 299 (417)
T ss_dssp TSEEEEESSHHH-HHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHGTTTTGTT-SEEEEESST-CHHHHHHHHH
T ss_pred cccccccccccc-cccccchhccccccccccccccccccccccccccc-ccccccccccccccccccccCChhhcccccc
Confidence 999999886543 34778999999999999999999999998733222 1111246889999999999999999999999
Q ss_pred HhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEc
Q 037878 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861 (2280)
Q Consensus 782 ~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~ 861 (2280)
.+. ...+.+.||+||++.+++....... ....+++|.|+|+++++|+|++++..+ +.|+.|||+|+
T Consensus 300 ~~~-----~~~i~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~ivd~~~~~~~-~~g~~Gei~i~ 365 (417)
T PF00501_consen 300 AFG-----NAPIINLYGSTETGSIATIRPPEDD--------IEKPGSVGKPLPGVEVKIVDPNTGEPL-PPGEPGEIVIR 365 (417)
T ss_dssp HHT-----TSEEEEEEEEGGGSSEEEEEETTTH--------HSSTTSEBEESTTEEEEEECTTTSSBE-STTSEEEEEEE
T ss_pred ccc-----cccceecccccccceeeeccccccc--------ccccccccccccccccccccccccccc-ccccccccccc
Confidence 873 2589999999999988765421110 112467899999999999999865444 79999999999
Q ss_pred CCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEEC
Q 037878 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVA 919 (2280)
Q Consensus 862 Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~ 919 (2280)
||.++.||+++|+.|+++|.+ +|||||||+|+++ ||.++++||+||+||+|
T Consensus 366 ~~~~~~gy~~~~~~~~~~~~~-------~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 366 GPNVFSGYYNDPELTAEAFID-------DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp STTSBSEETTBHHHHHHHEET-------TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred CCccceeeecccccccccccc-------ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 999999999999999999964 4799999999998 99999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=454.33 Aligned_cols=402 Identities=22% Similarity=0.319 Sum_probs=325.8
Q ss_pred cHHHHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhh
Q 037878 504 TYEELDANASRIAHKLLT-SRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKS 582 (2280)
Q Consensus 504 TY~eL~~~a~~lA~~L~~-~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~ 582 (2280)
||.||.+.++++|+.|.+ . |+++||+|+++++|+++++++++||+++|++++|+++..+.+. +..+++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~---g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~-------~~~~l~~ 70 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAG---GVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAER-------LAFILED 70 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhh---CCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHH-------HHHHHHh
Confidence 799999999999999998 6 8999999999999999999999999999999999999998887 8899999
Q ss_pred cCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHH
Q 037878 583 CGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIH 662 (2280)
Q Consensus 583 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~ 662 (2280)
++++.++++........... ......... ..... ..............++++++++|||||||.||+|.+||+++..
T Consensus 71 ~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~ 147 (408)
T TIGR01733 71 AGARLLLTDSALASRLAGLV-LPIILVDPL-ELAAL-DDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVN 147 (408)
T ss_pred cCCCEEEEcCchhhhccccC-CceEEechh-hhhhc-ccccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHH
Confidence 99999999876554332211 011000000 00000 0000000011114578999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHH
Q 037878 663 NVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELM 742 (2280)
Q Consensus 663 ~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l 742 (2280)
.+......+...+++++++..|++|.+++ ..++.++..|+++++.++.... .+..+.+.++++++|.+.++|.+++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~t~l~~~p~~~~~l 225 (408)
T TIGR01733 148 LLAWLARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEER-DAALLAALIAEHPVTVLNLTPSLLALL 225 (408)
T ss_pred HHHHHHHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhcc-CHHHHHHHHHHcCceEEEeCHHHHHHH
Confidence 99998888899999999999999999987 5789999999999987764432 578999999999999999999999998
Q ss_pred HHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCC
Q 037878 743 VRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQG 822 (2280)
Q Consensus 743 ~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g 822 (2280)
.+... .+++++|.+++||+++++++.++|.+.+ .++.+++.||+||++.+++......... ..
T Consensus 226 ~~~~~--------~~~~~l~~v~~~g~~~~~~~~~~~~~~~-----~~~~i~~~YG~tE~g~~~~~~~~~~~~~----~~ 288 (408)
T TIGR01733 226 AAALP--------PALASLRLVILGGEALTPALVDRWRARG-----PGARLINLYGPTETTVWSTATLVDADDA----PR 288 (408)
T ss_pred HHhhh--------hcccCceEEEEeCccCCHHHHHHHHHhC-----CCcEEEecccCCceEEEEEEEEcCcccc----CC
Confidence 76543 3478999999999999999999999875 2478999999999988775332111110 00
Q ss_pred ceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCC-CCCceeecCcEEEE
Q 037878 823 RVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNN-RGRKYTRTGDLGRI 901 (2280)
Q Consensus 823 ~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~-~~~~~yrTGDlgr~ 901 (2280)
. ..+++|.|+++++++|+|+++ ..++.|+.|||+|+|+.++.||+++|+.|.+.|...++.. ++.+||+|||++++
T Consensus 289 ~-~~~~~G~~~~~~~~~i~~~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~ 365 (408)
T TIGR01733 289 E-SPVPIGRPLANTRLYVLDDDL--RPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRY 365 (408)
T ss_pred c-cccccCcccCCceEEEECCCC--CCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEE
Confidence 1 257799999999999999883 4457999999999999999999999999999987643321 23359999999999
Q ss_pred E-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcC
Q 037878 902 I-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR 940 (2280)
Q Consensus 902 ~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~ 940 (2280)
+ ||.+++.||.||+||++|++|+|.|||++|.++++|.+
T Consensus 366 d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~ 405 (408)
T TIGR01733 366 LPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVRE 405 (408)
T ss_pred cCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhh
Confidence 7 99999999999999999999999999999999998864
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=456.43 Aligned_cols=419 Identities=21% Similarity=0.269 Sum_probs=338.5
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
.+...++++.+...+... |++.|+.+.+ .++||+||+.+++++|+.|.+. |++++++|+++++++.+++
T Consensus 223 ~~~~~~i~~~f~~~a~~~--p~~~a~~~~~------~~lty~el~~~a~~la~~l~~~---g~~~~~~V~i~~~rs~~~i 291 (642)
T COG1020 223 IPLRLTIHLLFEEQAATT--PDAVALVRGG------QQLTYAELDARANRLARLLISL---GVGPGETVAILADRSLELV 291 (642)
T ss_pred CCccchHHHHHHHHHHhC--CCceeEecCC------CcccHHHHHHHHHHHHHHHHHc---CCCCCCeEEEEcCCCHHHH
Confidence 344567899998888774 7887776542 5899999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccc
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAE 624 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (2280)
++++|++|+|++|||+|+.+|.+| +..+++++++..+++......... ..+.+..+..... ...
T Consensus 292 ~~~l~ilkaG~~yvP~d~~~P~~r-------~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~ 355 (642)
T COG1020 292 VALLAVLKAGAAYVPLDPLYPAER-------LAYILEDSRPTLLLTQAHLRVDDV-----GLPGLALDDALSE----IPD 355 (642)
T ss_pred HHHHHHHhcCCeEecCCCCChHHH-------HHHHHhhcCccEEEeccccccccc-----cCCcccccccccc----CCc
Confidence 999999999999999999999999 889999999999998733221110 0110111111000 000
Q ss_pred cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccce
Q 037878 625 NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGST 704 (2280)
Q Consensus 625 ~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~ 704 (2280)
.........+++.+|++|||||||+||||+++|+++.+.+.+....+..+.+|+++...+++||.+. .+++.++..|++
T Consensus 356 ~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~ 434 (642)
T COG1020 356 TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASV-FEIFGALLEGAR 434 (642)
T ss_pred cCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhH-HHHHHHHhCCCE
Confidence 0001123456899999999999999999999999999999888888999999999999999999986 689999999999
Q ss_pred EEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhc
Q 037878 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTR 784 (2280)
Q Consensus 705 ~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~ 784 (2280)
+++.++.. ..++..+.+.+.++++|++..+|..+..+........ .....+.+|.+++|||+++.++..++.....
T Consensus 435 l~~~~~~~-~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~---~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~ 510 (642)
T COG1020 435 LVLAPALL-QVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD---LISPCERLRQLLSGGEALPLALVQRLLQLAA 510 (642)
T ss_pred EEecCccc-cCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc---ccCCcccccEEEEcCCCCCHHHHHHHHHhcc
Confidence 99987654 5699999999999999999999998888775411111 1122345999999999999999999987642
Q ss_pred CCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCC
Q 037878 785 PFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS 864 (2280)
Q Consensus 785 ~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~ 864 (2280)
+...+.|.||+||+++.++........ .. .-.+|+|++|++++|+|.. .+.+|.|..|||+|.|.+
T Consensus 511 ----~~~~l~~~ygpTe~~~~~~~~~~~~~~-------~~-~~piG~p~~n~~~~ild~~--~~~~p~gv~gel~i~g~~ 576 (642)
T COG1020 511 ----LARRLLNLYGPTEATLDAPSFPISAEL-------ES-RVPIGRPVANTQLYILDQG--LRPLPLGVPGELYIAGLG 576 (642)
T ss_pred ----ccceEeeccCccHHhhheeeEEccccc-------CC-CCCcceeeCCCeEEEECCC--CCcCCCCCCeeeEECCcc
Confidence 146799999999987766544322111 00 2468999999999999943 356689999999999999
Q ss_pred cccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhcc
Q 037878 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESST 936 (2280)
Q Consensus 865 v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p 936 (2280)
+++||+++|++|+++|..+ ++|||||++|+. ||.++++||.|+|||++|+|||++|||..+.++|
T Consensus 577 ~a~gy~~~p~lt~~~f~~~-------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 577 LALGYLNRPDLTAERFIAL-------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred hhhhhcCChhhhHHHhhhc-------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 9999999999999999863 499999999985 9999999999999999999999999999998764
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=389.95 Aligned_cols=497 Identities=19% Similarity=0.198 Sum_probs=369.8
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+.+...++++ |+++|+++.++. +.+||+|++++++++|+.|... |++.||.|++.|+|++|++..+
T Consensus 76 ~~ti~~~F~~~vrr~--p~k~aii~~~~~----~~~Tf~e~~~~s~~~A~~~~~~---~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 76 RRTIAELFLSQVRRQ--PDKPAIIYEGPF----QSLTFAELDARSNRVANYLHAE---GLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred CCcHHHHHHHHHHhC--CCccEEEEeCCC----ceeeHHHHHHHHHHHHHHHHHh---hcccCCEEEEecCCChhHHHHH
Confidence 456788888887774 899999988753 5789999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCC-----Cccccc---------c
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNL-----PWLHTD---------S 613 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~-----~~~~~~---------~ 613 (2280)
|+..|+|++...|+...-.+. +.+.+..++++.++++.+....+.+. .+.. ...... +
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~-------LlHsi~~s~aralv~~~el~~~~~e~-~~~l~~~~i~~~~~~~~~~~~g~~~ 218 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEP-------LLHSITVSGARALVVGPELLNALEEI-LPLLIKNGIHVFSLGPTSVPDGIES 218 (649)
T ss_pred HhHHhhCceeeeeccccccch-------hhhhhhhcCceEEEECHHHHHHHHhc-chhhhhccceEEecCCCCCCchHHH
Confidence 999999999999998776665 88999999999999998876554432 1111 111110 1
Q ss_pred ccccccccccccc---cccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhh
Q 037878 614 WVKNSKNLLAENV---VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMG 690 (2280)
Q Consensus 614 ~~~~~~~~~~~~~---~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 690 (2280)
+..... .....+ ......+..+++..||||||||.||+.++||.-+..........++++++|+++..+|++|.++
T Consensus 219 L~~~l~-~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa 297 (649)
T KOG1179|consen 219 LLAKLS-AAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAA 297 (649)
T ss_pred HHHhhc-ccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHH
Confidence 111000 011111 1223345678999999999999999999999999888887888899999999999999999999
Q ss_pred HHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCC
Q 037878 691 LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770 (2280)
Q Consensus 691 l~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~ 770 (2280)
.+..+..++..|+|+|+-. .| +...+|+...++++|+..-.--+.+-+++...... +.-..+|..+ |..
T Consensus 298 ~ilGi~~~l~~GaT~Vlrk--KF--SAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~-----er~HkVRla~--GNG 366 (649)
T KOG1179|consen 298 GILGIGGCLLHGATVVLRK--KF--SASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPE-----ERQHKVRLAY--GNG 366 (649)
T ss_pred HHHHHHHHHhcCceEEEec--cc--chhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChh-----hcCceEEEEe--cCC
Confidence 9999999999999999965 23 88899999999999998877666666665433322 2223566554 777
Q ss_pred CCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccC---------CC------CC
Q 037878 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQ---------ND------PD 835 (2280)
Q Consensus 771 l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~---------p~------pg 835 (2280)
+.++..++|.++|+ ..++.+.||+||...-....... +|.+|. |. +.
T Consensus 367 LR~diW~~Fv~RFg-----~~~IgE~YgaTEgn~~~~N~d~~-------------vGA~G~~~~~~~~l~p~~LIk~D~~ 428 (649)
T KOG1179|consen 367 LRPDIWQQFVKRFG-----IIKIGEFYGATEGNSNLVNYDGR-------------VGACGFMSRLLKLLYPFRLIKVDPE 428 (649)
T ss_pred CCchHHHHHHHHcC-----CCeEEEEeccccCcceeeeecCc-------------cccccchhhhhhhccceEEEEecCC
Confidence 99999999999874 45699999999987543322110 111111 00 11
Q ss_pred ceEEEEcCCCCcccCCCCCeeEEEEc----CC-CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEE
Q 037878 836 VDIRIVNPETSEEIGEPGKEGEVWIS----SP-SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFIT 909 (2280)
Q Consensus 836 ~~v~Ivd~~~~~~~~p~G~~GEL~i~----Gp-~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~ 909 (2280)
+.=-|.|++|....+++||.|.|+-+ -| .-+.||.+.++.|+++...|-+. .|+-||.|||+-.+| .|++||.
T Consensus 429 t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFk-kGD~~f~tGDlLv~D~~GylYF~ 507 (649)
T KOG1179|consen 429 TGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFK-KGDVYFNTGDLLVADELGYLYFK 507 (649)
T ss_pred CCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhc-cCcEEEeeCcEEEEecCCcEEEe
Confidence 11124566666666789999976542 22 23889999889998887766443 578999999999998 8999999
Q ss_pred ecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHH
Q 037878 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIEN 989 (2280)
Q Consensus 910 GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~ 989 (2280)
+|..|.+.-.|+||+..|||.+|..+..+.+ +.|.|+.. ++.++..+...+. ..+....+ .+.
T Consensus 508 DRtGDTFRWKGENVsTtEVe~~l~~~~~~~d---v~VYGV~V----------P~~EGRaGMAaI~-~~p~~~~d---~~~ 570 (649)
T KOG1179|consen 508 DRTGDTFRWKGENVSTTEVEDVLSALDFLQD---VNVYGVTV----------PGYEGRAGMAAIV-LDPTTEKD---LEK 570 (649)
T ss_pred ccCCCceeecCCcccHHHHHHHHhhhccccc---eeEEEEec----------CCccCccceEEEE-ecCcccch---HHH
Confidence 9999999999999999999999999888765 78887543 3334444444433 23333322 455
Q ss_pred HHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 990 IKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 990 l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
+-.++.+.++.+..|..+-..++|++|.+=|..|.+|.+.
T Consensus 571 l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 571 LYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred HHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence 5566666666666665554569999999999999988765
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=393.71 Aligned_cols=324 Identities=21% Similarity=0.304 Sum_probs=247.5
Q ss_pred CCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCc
Q 037878 631 ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSP 710 (2280)
Q Consensus 631 ~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~ 710 (2280)
...++|+++|+|||||||.||||+++|+++.+.+......+ ...++.+..+|++|.+++. .++.++..|++++++..
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHH-HHHHHHHcCCeEEecCc
Confidence 45678999999999999999999999999988887665544 3557888999999999974 57788888988877432
Q ss_pred cccccCHHHHHHHHhhcc--eeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 711 LTFIKNPLLWLETMSKYR--ATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 711 ~~~~~~p~~l~~~i~~~~--vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
.. ..++..+++.+++++ .++...+|..+..++.... ...+++++|.+++||+++++++.+++.+.
T Consensus 108 ~~-~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~------~~~~~~~l~~i~~gG~~l~~~~~~~~~~~------ 174 (358)
T PRK07824 108 SA-GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA------ATAALAELDAVLVGGGPAPAPVLDAAAAA------ 174 (358)
T ss_pred CC-CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc------ccCCcccceEEEECCCCCCHHHHHHHHhc------
Confidence 21 238899999999998 4555566766655443211 12457899999999999999999888752
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++.+++.||+||++..+. ..|.|+++++++|.| |||+++|+.++.|
T Consensus 175 -~~~v~~~YG~TE~~~~~~--------------------~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~g 220 (358)
T PRK07824 175 -GINVVRTYGMSETSGGCV--------------------YDGVPLDGVRVRVED-------------GRIALGGPTLAKG 220 (358)
T ss_pred -CCcEEecccCCccCCCcC--------------------cCceeCCCCEEEecC-------------CEEEEecCccccc
Confidence 567999999999864321 246788999998832 8999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEe
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~ 948 (2280)
|+|+++.+ .|. .++||+|||+++++||.++|+||+||+||++|+||+|.|||++|.+||+|.+ |+|++
T Consensus 221 Y~~~~~~~--~~~-------~~g~~~TGDl~~~~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~---~~vv~ 288 (358)
T PRK07824 221 YRNPVDPD--PFA-------EPGWFRTDDLGALDDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVAD---CAVFG 288 (358)
T ss_pred cCCCcccc--ccc-------CCCceecccEEEEeCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcce---EEEEe
Confidence 99988743 232 2469999999999999999999999999999999999999999999999975 88998
Q ss_pred ccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
.+++..+ ....+++ ....+. ...+++++.++++++. +++| ..++.+++||+|.+||+||++|+
T Consensus 289 ~~~~~~g----------~~~~a~v--~~~~~~~~~~~~i~~~~~~~l~~-~~~P---~~i~~v~~lP~t~~GKi~r~~L~ 352 (358)
T PRK07824 289 LPDDRLG----------QRVVAAV--VGDGGPAPTLEALRAHVARTLDR-TAAP---RELHVVDELPRRGIGKVDRRALV 352 (358)
T ss_pred cCCCCCc----------eEEEEEE--EeCCCCCcCHHHHHHHHHhhCcc-ccCC---CEEEEecCCCCCCCccccHHHHH
Confidence 8775432 1222222 222222 2234566666666654 4444 44555699999999999999999
Q ss_pred HHhhc
Q 037878 1028 KQFVD 1032 (2280)
Q Consensus 1028 ~~~~~ 1032 (2280)
++|.+
T Consensus 353 ~~~~~ 357 (358)
T PRK07824 353 RRFAG 357 (358)
T ss_pred HHhhc
Confidence 98754
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=412.06 Aligned_cols=404 Identities=14% Similarity=0.120 Sum_probs=292.2
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
++...++.+++++.+++. |+++|+.+....+ +++.+||+|+.++++++|+.|++. |+++||+|+|+++|++||+
T Consensus 423 ~~~~~Tl~dll~~~a~~~--pd~~al~~~~~~g-~~~~lTY~El~~~V~~lAa~L~~l---GV~~GDrVaIls~N~~Ewv 496 (1452)
T PTZ00297 423 LAGVRSLGEMWERSVTRH--STFRCLGQTSESG-ESEWLTYGTVDARARELGSGLLAL---GVRPGDVIGVDCEASRNIV 496 (1452)
T ss_pred cccCCCHHHHHHHHHHHC--CCCeEEEEeccCC-CceEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHH
Confidence 345668999999888774 7888886431112 236799999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCc-cccccc---c-----
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPW-LHTDSW---V----- 615 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~~~---~----- 615 (2280)
++.+||+++|++.||+.+. .+. +.++++++++++++++.+....+.....+.+.. +..+.. .
T Consensus 497 ia~lA~~~~GaV~VPly~t--~~e-------L~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~ 567 (1452)
T PTZ00297 497 ILEVACALYGFTTLPLVGK--GST-------MRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVA 567 (1452)
T ss_pred HHHHHHHHcCCEEEeCCCC--HHH-------HHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCccccccccc
Confidence 9999999999999999643 222 889999999999999866544332211111111 111100 0
Q ss_pred ----------ccccccccc-cccccCCCCCCCeEEEEe---ccCCCCCceEEEEchHHHHHHHHHHHHHc---CCCCCcE
Q 037878 616 ----------KNSKNLLAE-NVVCFTESQPDDLCFLQF---TSGSTGDAKGVMITHGGLIHNVKLMRKRY---KSTSKTV 678 (2280)
Q Consensus 616 ----------~~~~~~~~~-~~~~~~~~~~~d~a~Iiy---TSGSTG~PKgV~~tH~~l~~~~~~~~~~~---~~~~~d~ 678 (2280)
......... .........++|++.|+| ||||||.||||++||+|++..+....... ...++|+
T Consensus 568 ~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~ 647 (1452)
T PTZ00297 568 RDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHL 647 (1452)
T ss_pred ccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCE
Confidence 000000000 011122346889999996 99999999999999999999988765432 3467899
Q ss_pred EEEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccc-----
Q 037878 679 LVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV----- 753 (2280)
Q Consensus 679 ~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~----- 753 (2280)
+++++|++|.++.+ ..+.++..|+++.. .++..+++.++++++|++.++|.+++.+.+.........
T Consensus 648 ~Ls~LPLaHI~er~-~~~~~l~~G~~I~~-------~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~ 719 (1452)
T PTZ00297 648 MVHFTPFAMLFNRV-FVLGLFAHGSAVAT-------VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYS 719 (1452)
T ss_pred EEEechHHHHHHHH-HHHHHHHcCCEEEe-------CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999964 45667888888752 267889999999999999999999988765442211100
Q ss_pred -----------------cc----cC----------C-CCccEEEEecC--CCCHHHHHHHHHHhcCCCCCCcccccccCc
Q 037878 754 -----------------RS----FD----------L-SSMKFLMVAAE--PVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799 (2280)
Q Consensus 754 -----------------~~----~~----------l-~~Lr~l~~gGe--~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~ 799 (2280)
.. .+ + .++|.+++||. +++..+.. .+.+..+||+
T Consensus 720 ~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------------~i~i~~g~gl 787 (1452)
T PTZ00297 720 WLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------------HISVCYVPCL 787 (1452)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------------CceEEEecce
Confidence 00 00 0 57999999973 55544322 3557889999
Q ss_pred cccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcC-CCCcccCCCCCeeEEEEcCCCcccccCCCchhhHH
Q 037878 800 AENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNP-ETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQI 878 (2280)
Q Consensus 800 TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~-~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~ 878 (2280)
||+. ++.... .... .|+|+|+++++|.|. +.+. .+..|||+++ |++||+.|++
T Consensus 788 TE~~---~~~~~~----------~~~~--~G~PlpgvEvKI~~~~E~~~----~~~~GEIlvr-------~~kdpe~T~e 841 (1452)
T PTZ00297 788 REVF---FLPSEG----------VFCV--DGTPAPSLQVDLEPFDEPSD----GAGIGQLVLA-------KKGEPRRTLP 841 (1452)
T ss_pred EEee---eecCCC----------Cccc--CCeecCceEEEEcccccccC----CCCCCeEEEE-------ECCChHHHHH
Confidence 9943 222111 1112 389999999999973 3222 1246999995 4589999997
Q ss_pred HHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEE-CCeeechHHHHHHHHhccCCcCCceeEEEec
Q 037878 879 TFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIV-AGRNVYSADVEKTVESSTEHIRPGCCAVIGV 949 (2280)
Q Consensus 879 ~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~ 949 (2280)
.+ ++|+ +||.|.|+||+||+||. +|++|.|+.||+.+.++|-|.+ ++|+|-
T Consensus 842 ~~---------~gW~--------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~q---i~V~Gd 893 (1452)
T PTZ00297 842 IA---------AQWK--------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVND---IFLYAD 893 (1452)
T ss_pred hh---------CcCc--------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccE---EEEEec
Confidence 43 2564 58999999999999999 8999999999999999998864 778773
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=384.83 Aligned_cols=609 Identities=19% Similarity=0.169 Sum_probs=377.9
Q ss_pred HHHHHHhhccccc-cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 471 LDGYLKHWGTHRI-TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 471 l~~~l~~~a~~~~-~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
+++-++..+...+ ......+....+.+. ..+.||++....++.+++.|... |..+|+.|++++..+.++++.+++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-i~~~t~r~~~~~~n~~~q~l~~~---~~~~~~~v~i~~~~~~d~~v~v~~ 113 (1032)
T KOG1178|consen 38 LEDSFRRELAEAPENTGHVIIPTASESGI-IDSFTYRLIRLLSNIIAQFLVSL---GSLRGTTVAIYMLPSVDLVVSVFA 113 (1032)
T ss_pred hhhHHHHHHhhcccCCCceEeeccccccc-ccchhhhhhhcccchhHHHhhhc---ccccCceEEEeccCcCCeeeeeee
Confidence 3444444444321 122333333333332 36899999999999999999887 899999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccccccccc
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCF 629 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (2280)
++++|..++|+||++|..+....+.++.+.+......++.-. ...........+.......++...... ........
T Consensus 114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l-~i~~~~~~~~~~~~sv~~~~~~f~~~~--~~~~~r~~ 190 (1032)
T KOG1178|consen 114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRL-NIIDILLNSLFPKLSVETIADSFQMVL--HNEDTREI 190 (1032)
T ss_pred hhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhh-hhHHHHhhccccccchhhccchhhhhh--ccCCCcce
Confidence 999999999999999932222222233333332222211110 000000000111111111111111000 01111122
Q ss_pred CCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeC
Q 037878 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFS 709 (2280)
Q Consensus 630 ~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~ 709 (2280)
....+|..+++.||||+||.||||.-+|..+++..++....+..+.++++-.....+++...-..+.+.|..|+.+..+.
T Consensus 191 ~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~ 270 (1032)
T KOG1178|consen 191 RVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPT 270 (1032)
T ss_pred eeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhHhhcCceeeccc
Confidence 33456789999999999999999999999999999999999998888876444455455544344455556665555443
Q ss_pred ccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcc----ccc-c---cccCCCCccEEEEecCCCCHHHHHHHHH
Q 037878 710 PLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS----KDK-V---RSFDLSSMKFLMVAAEPVRQTTVKRFVE 781 (2280)
Q Consensus 710 ~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----~~~-~---~~~~l~~Lr~l~~gGe~l~~~l~~~~~~ 781 (2280)
+ .....|..|.+.+++++++....+|++.+.++...... ... . .....+.|+...++||+...++...+.+
T Consensus 271 ~-~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~ 349 (1032)
T KOG1178|consen 271 A-TIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFD 349 (1032)
T ss_pred c-cCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhh
Confidence 3 22334889999999999999999999977776543331 000 0 0122357999999999999988876655
Q ss_pred HhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCC----CceEEEEcCCCCcccCCCCCeeE
Q 037878 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDP----DVDIRIVNPETSEEIGEPGKEGE 857 (2280)
Q Consensus 782 ~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~p----g~~v~Ivd~~~~~~~~p~G~~GE 857 (2280)
.+. ..-...-|++||.+...+............ ...+..+++-.. ...+.+... .|..||
T Consensus 350 ~~~-----~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~---~~~v~~~p~~~~~~~~~~~~~~~~~--------~~~~~~ 413 (1032)
T KOG1178|consen 350 LLA-----EIFFGLPYLSTDPTGLVSYDDFSPSKVLLT---NENVYSVPKFDSIIGSLTVLESLYR--------AGGEGE 413 (1032)
T ss_pred ccc-----ceeeeecccCCCCccceeHHhhCcccceec---ceeEEeccchhhccCCCcceeeeec--------cCcccC
Confidence 442 222334499999887766543222111111 011111111111 122222221 122233
Q ss_pred EEEcCCCcccccC-----CCchhhHHHHhhhcc--CCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHH
Q 037878 858 VWISSPSAGIGYW-----GREELSQITFRNELQ--NNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVE 929 (2280)
Q Consensus 858 L~i~Gp~v~~GY~-----~~p~~t~~~f~~~~~--~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE 929 (2280)
.++.+.+++.++- .+...+.+.|.+... ....+++|||||+||.- +|.+.|.||.|+|||+||+||+++||+
T Consensus 414 ~~v~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~ 493 (1032)
T KOG1178|consen 414 GGVGKGCLGAEQNLSSWVVDGYSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELN 493 (1032)
T ss_pred CcccceeecccccccceeeccccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhc
Confidence 3332222222111 111234444433222 23347999999999985 999999999999999999999999999
Q ss_pred HHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEec
Q 037878 930 KTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIK 1009 (2280)
Q Consensus 930 ~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~ 1009 (2280)
+++..||.|.+ +.+..+.+...+ ...+++++ ...+... .++..|+.++..++..++.|..++.
T Consensus 494 t~v~~~p~v~~---~itl~~~~~~~~---------~~l~aFvv---~~~~~~~--~~~~~i~~~l~~~La~y~vPs~~V~ 556 (1032)
T KOG1178|consen 494 TVVEVHPDVKE---AITLARENSTVG---------QTLLAFVV---ERGGSKS--VLIRDIRNYLKKELASYMLPSLVVP 556 (1032)
T ss_pred hhhccCcchhh---hheeeeeccccC---------ceEEEEEe---ccCCCCc--hhHHHHHHhhcccccceecceEEEE
Confidence 99999998875 444544433211 12233332 2222222 3366677777776666777777888
Q ss_pred CCCccCCCCcccchHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHH
Q 037878 1010 PRTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGL 1089 (2280)
Q Consensus 1010 ~~~lP~t~sGKvdR~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~i 1089 (2280)
++++|+|++||||+++|.+ +.......-. .... .......+..+..++..
T Consensus 557 l~~vPl~~~GKvDkkaL~~-~~s~~~~~~~---------------s~~~--------------~~~~~~~~~~~~~v~d~ 606 (1032)
T KOG1178|consen 557 LAKVPLNPNGKVDKKALLE-YNSKLTNVQD---------------SSLS--------------EAKDSILSLPLSTVFDL 606 (1032)
T ss_pred hhhCCcCCCCCcChhhhhh-hhhhhccccc---------------ceee--------------ccccccccccccchhhh
Confidence 8999999999999999877 3221111000 0000 00011223345567788
Q ss_pred HHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1090 VSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1090 w~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
|-++.+. ..++.|+|||++|||||.|+++...+++...+..++.-++..+|+..+...+..
T Consensus 607 ~l~~~~~--~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~ 667 (1032)
T KOG1178|consen 607 WLSIGSL--AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR 667 (1032)
T ss_pred hhhhcCc--cccCCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh
Confidence 8888872 356789999999999999999999999998999999999999999999987654
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=321.41 Aligned_cols=289 Identities=17% Similarity=0.155 Sum_probs=209.3
Q ss_pred CCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCC--CcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCccc
Q 037878 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTS--KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLT 712 (2280)
Q Consensus 635 ~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~ 712 (2280)
++.++++|||||||.||||++||+++.+.+......++... .+++++++|++|.+++...++.++..|+++++...
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~-- 172 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA-- 172 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC--
Confidence 56899999999999999999999999998888777777643 46899999999999987888889999999988653
Q ss_pred cccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCcc
Q 037878 713 FIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792 (2280)
Q Consensus 713 ~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~ 792 (2280)
+ ++..+++.++.+ |++.++|++++.+.+. ..+++++|. ++||+++++++.+++.+. . ...
T Consensus 173 ~--~~~~~l~~i~~~--t~~~~~P~~l~~l~~~---------~~~l~slr~-i~gGa~l~~~l~~~~~~~-g-----~~~ 232 (386)
T TIGR02372 173 A--PASGIMRHARPG--DLIVGTPFIWEQLADL---------DYRLPGVVG-VSSGAPSTAATWRCLLAA-G-----LAR 232 (386)
T ss_pred C--ChHHHHHhhccC--CEEEECcHHHHHHHhh---------CcCCCccee-EecCCCCCHHHHHHHHHh-c-----ccc
Confidence 2 677788877653 7888899999888643 134677886 678999999999998874 1 235
Q ss_pred cccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCC
Q 037878 793 MAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGR 872 (2280)
Q Consensus 793 v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~ 872 (2280)
+++.||+||++.+++... . +..|.|+|++++.+ | ++ . + .|+
T Consensus 233 v~~~YG~TEt~~i~~~~~-~--------------~~~~~~~p~~~~~~-~-~~--------~--~---~g~--------- 273 (386)
T TIGR02372 233 LLEVYGATETGGIGLREA-P--------------DDPFRLLPDLACFA-D-TL--------S--S---AGL--------- 273 (386)
T ss_pred hhheeccccccccccccC-C--------------CCCcccCCCccccC-C-Cc--------c--C---CCc---------
Confidence 899999999986543211 0 12345667665432 1 10 0 0 011
Q ss_pred chhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccc
Q 037878 873 EELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPE 951 (2280)
Q Consensus 873 p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~ 951 (2280)
..|++|||+++++ +|.++|+||+||+||++|+||+|.|||++|.+||+|.+ |+|...
T Consensus 274 -----------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~---~~v~~~-- 331 (386)
T TIGR02372 274 -----------------ARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRA---AAVRLD-- 331 (386)
T ss_pred -----------------cceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceE---EEEEcC--
Confidence 1368999999997 99999999999999999999999999999999999865 555421
Q ss_pred cccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccc
Q 037878 952 EVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIK 1022 (2280)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvd 1022 (2280)
+....++++. .++... ..+.+.+++.+.++++.+..|..+...++||+|++||++
T Consensus 332 ------------g~~~~a~vv~---~~~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 332 ------------GRRLKAFIVV---AEDADE-AELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred ------------CceEEEEEEE---CCCCCh-HHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 1122233332 222211 222344455455444444455556667999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=299.84 Aligned_cols=538 Identities=25% Similarity=0.388 Sum_probs=399.9
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
-++-++|+..++. +||.+|+...+.+|.+..++||++|..++.+++..|..++ -+++||.|++++++++|++++++
T Consensus 770 ~~ile~Lq~R~a~--tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~--~lk~Gd~V~Lmy~~sie~vaa~~ 845 (1363)
T KOG3628|consen 770 LTILEILQWRAAK--TPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKG--HLKAGDHVVLMYPPSIEFVAAIY 845 (1363)
T ss_pred HHHHHHHHHHhhc--CCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcc--cCCCCCeEEEEcCChHHHHHHHH
Confidence 4567788888877 4899999999999988899999999999999999999875 58999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC---------CCCCCcccccccccc--
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS---------WPNLPWLHTDSWVKN-- 617 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-- 617 (2280)
||+.+|.+++|+.|..... ....+..+..|++..++..++++......++... ++.. +..+++...
T Consensus 846 ~Cly~GliPIpv~p~~~s~-l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i--~~~~~~~~t~~ 922 (1363)
T KOG3628|consen 846 ACLYLGLIPIPVPPPHASN-LIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLI--LVLPKLPETIR 922 (1363)
T ss_pred HHHhcCeeeeccCCccHHh-hhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhh--hcccccchhhh
Confidence 9999999999998866543 3445667888999999999999876655443221 1110 111111100
Q ss_pred --cccccc-ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHH
Q 037878 618 --SKNLLA-ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694 (2280)
Q Consensus 618 --~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~ 694 (2280)
...... ....++....++.+||+=|.--++|.--||.++|.++++.++.......+.+..-++.+.+.+...|++.+
T Consensus 923 k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~w 1002 (1363)
T KOG3628|consen 923 KRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHW 1002 (1363)
T ss_pred hhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHH
Confidence 000000 01112223456889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccc--cccCCCCccEEEEecCCCC
Q 037878 695 LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKV--RSFDLSSMKFLMVAAEPVR 772 (2280)
Q Consensus 695 i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~--~~~~l~~Lr~l~~gGe~l~ 772 (2280)
++...++|...++.+|..+..+|..|++.++++++.-.+..=..+..+.+.+....... ...++++ ..++..-|...
T Consensus 1003 cLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv~~~~RPr 1081 (1363)
T KOG3628|consen 1003 CLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVVPAEERPR 1081 (1363)
T ss_pred HHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceeeecCCccH
Confidence 99999999999999999999999999999999998877766555666655444332211 1123333 34444556667
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCcee--ecC----CCceeec-----------cccCCCCC
Q 037878 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPII--LDW----QGRVCCG-----------YVDQNDPD 835 (2280)
Q Consensus 773 ~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~--~~~----~g~~~~g-----------~vG~p~pg 835 (2280)
..+++-+.+.+...|+....+--.|+.-=...+|........|.. .|. .|..... --|.-.++
T Consensus 1082 ~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~ 1161 (1363)
T KOG3628|consen 1082 IALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVY 1161 (1363)
T ss_pred HHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCccccc
Confidence 788899999988889888888888887666555444332222211 110 1222111 12555689
Q ss_pred ceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCc-hhhHHHHhhhccC--CCCCceeecCcEEEEE-----C----
Q 037878 836 VDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGRE-ELSQITFRNELQN--NRGRKYTRTGDLGRII-----D---- 903 (2280)
Q Consensus 836 ~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p-~~t~~~f~~~~~~--~~~~~~yrTGDlgr~~-----d---- 903 (2280)
+++.|++||+..++ ..|+.||||+.+..-+.+|++-. |...+.|...... ..+.+|-||||+|++. |
T Consensus 1162 ~~i~IvnPEtk~pc-~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e 1240 (1363)
T KOG3628|consen 1162 TDIAIVNPETKGPC-RDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVE 1240 (1363)
T ss_pred ceeEEeCCcccccc-ccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccce
Confidence 99999999986554 59999999999999998887541 1333444332221 2367899999999983 3
Q ss_pred --CeEEEEecCCCeEEECCeeechHHHHHHHHh-ccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC
Q 037878 904 --GKFFITGRIKDLIIVAGRNVYSADVEKTVES-STEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK 980 (2280)
Q Consensus 904 --G~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~-~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~ 980 (2280)
.-||++|-.++.+.++|-|..|.+||..+.+ ||.|- .|+|+... ++ +|++++.. ++
T Consensus 1241 ~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~---~cavF~~~---------------gl--vVvviE~~-gq 1299 (1363)
T KOG3628|consen 1241 RHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIG---GCAVFQAT---------------GL--VVVVIECH-GQ 1299 (1363)
T ss_pred eeeeEEEeecccceeeecCcccCcchHHHHHHHhccccc---ceeeEeeC---------------Ce--EEEEEEec-Cc
Confidence 2589999999999999999999999998875 66664 48888632 12 33444443 34
Q ss_pred CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCCCC
Q 037878 981 PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLN 1036 (2280)
Q Consensus 981 ~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~ 1036 (2280)
....++...+.+.+.+++.+-...+.++....+|+++.|.-+|..+++.+.++.++
T Consensus 1300 ~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~ 1355 (1363)
T KOG3628|consen 1300 QELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLD 1355 (1363)
T ss_pred hhHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccc
Confidence 44467888888888888887777788888899999999999999999999887754
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=314.81 Aligned_cols=329 Identities=19% Similarity=0.218 Sum_probs=229.0
Q ss_pred CCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHH---HHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeC
Q 037878 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM---RKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFS 709 (2280)
Q Consensus 633 ~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~ 709 (2280)
+++++++++|||||||.||+|.++|+++....... ...++..++|++++..++.+..+.+...+..+..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 45788999999999999999999999987654433 234578889998877665544443334566777888887665
Q ss_pred ccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCC
Q 037878 710 PLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLS 789 (2280)
Q Consensus 710 ~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~ 789 (2280)
+ .++..+++.|+++++|++.++|+.+..+++....... ..+..++|.+++|||++++++.+.+.+.+
T Consensus 153 ~----~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~---~~~~~~lr~i~~~ge~l~~~~~~~i~~~~------ 219 (422)
T TIGR02155 153 G----GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGI---DPAQTSLQVGIFGAEPWTNAMRKEIEARL------ 219 (422)
T ss_pred C----CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCC---CcccCceEEEEEeCCcCCHHHHHHHHHHh------
Confidence 3 2578899999999999999999999888876543321 12235899999999999999999988875
Q ss_pred CcccccccCcccccc-ceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 790 QGVMAPGYGLAENCV-FVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 790 ~~~v~n~YG~TE~~~-~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++.++|.||+||++. .+........ . |.. .+.++..++|+|++++.+ +++|+.|||++++.
T Consensus 220 g~~v~~~YG~tE~~~~~~~~~~~~~~------~-----g~~-~~~~~~~~eivd~~~g~~-v~~Ge~Gelvvt~~----- 281 (422)
T TIGR02155 220 GMKATDIYGLSEVIGPGVAMECVETQ------D-----GLH-IWEDHFYPEIIDPHTGEV-LPDGEEGELVFTTL----- 281 (422)
T ss_pred CCceEecccchhhcCCceeecccccC------C-----Cce-EecCeeEEEEECCCCCCC-CCCCCeeEEEEecC-----
Confidence 467999999999852 1111100000 0 110 012356778999766544 47999999999873
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-C-C-----eEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCC
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRII-D-G-----KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRP 941 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-d-G-----~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~ 941 (2280)
++++|. .+||+|||+++++ + | .+++.||.||+||++|.+|+|.|||++|.++|+|...
T Consensus 282 -------~~~~~p--------~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~ 346 (422)
T TIGR02155 282 -------TKEALP--------VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPH 346 (422)
T ss_pred -------Cccccc--------eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCC
Confidence 233331 2699999999996 3 4 4689999999999999999999999999999998631
Q ss_pred ceeEEEeccccccccccccccCCCCceEEEEEEEecCCC------CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccC
Q 037878 942 GCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK------PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSK 1015 (2280)
Q Consensus 942 ~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~------~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~ 1015 (2280)
+. +..... +..+...+.+ +..++. .....+.+.+++.+.+.+.... .+.++.+++||+
T Consensus 347 --~q-~~~~~~----------~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~v~~~~~~~lp~ 410 (422)
T TIGR02155 347 --YQ-LELTRN----------GHMDELTLKV--ELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM-DVHLVEPGSLPR 410 (422)
T ss_pred --EE-EEEEcC----------CCccEEEEEE--EEecCcccccchHHHHHHHHHHHHHHHhccCcEE-EEEEECCCCccC
Confidence 22 221111 1111222222 222111 1113345677777777666654 466777899999
Q ss_pred CCCcccchH
Q 037878 1016 TTSGKIKRF 1024 (2280)
Q Consensus 1016 t~sGKvdR~ 1024 (2280)
|+ ||++|.
T Consensus 411 ~~-GK~~~~ 418 (422)
T TIGR02155 411 SE-GKARRV 418 (422)
T ss_pred CC-CCceEE
Confidence 88 999883
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=270.47 Aligned_cols=260 Identities=18% Similarity=0.185 Sum_probs=188.2
Q ss_pred CCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH---cCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR---YKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 632 ~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.+.++++.|.|||||||+||+|.+||+++.......... .++.++|+++...++.++.+.....+.++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 346789999999999999999999999987766555444 47889999999999888777655556667788876532
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
. .....++.++++++|.+.++|+.+..+.+........ .+.+++|.+++|||++++++.+++.+.+
T Consensus 163 ~------~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~---~~~~~lr~ii~gGE~l~~~~r~~ie~~~----- 228 (445)
T TIGR03335 163 G------KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGID---PAESSIRRLVVGGESFADESRNYVEELW----- 228 (445)
T ss_pred C------chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC---cccCcceEEEEcCCCCCHHHHHHHHHHh-----
Confidence 2 2234678899999999988888777776654433211 1246899999999999999888887764
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++.++|.||+||+++.+.|.... | .-.+-+...+.|+|++++ +++|+|+.|||++..-.-.
T Consensus 229 -g~~v~~~YG~TE~~~~~~c~~~~--------------g-~h~~~d~~~vEIvDp~~~-~~vp~Ge~GELvvT~L~~~-- 289 (445)
T TIGR03335 229 -GCEVYNTYGSTEGTMCGECQAVA--------------G-LHVPEDLVHLDVYDPRHQ-RFLPDGECGRIVLTTLLKP-- 289 (445)
T ss_pred -CCcEEecCChhhhhheEEecCCC--------------C-ccccCCceEEEEEcCCCC-CCCcCCCceEEEEEecCCC--
Confidence 57899999999986432221110 1 011224578999999875 4458999999999873210
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEE-E-C----C----eEEEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRI-I-D----G----KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~-~-d----G----~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
. +.+.+ |. -=|||||++++ . + | .+...||.||+++++|.+|+|.+||++|.+++++
T Consensus 290 ----~--~r~~~---Pl-----iRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~ 355 (445)
T TIGR03335 290 ----G--ERCGS---LL-----INYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENM 355 (445)
T ss_pred ----C--ccCCc---eE-----EEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCC
Confidence 0 00001 00 12799999997 3 2 2 2555799999999999999999999999995433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=239.63 Aligned_cols=351 Identities=20% Similarity=0.267 Sum_probs=229.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec--CccceeeeecccceEEecCCC----Cceee
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE--EAGAELEEMDSHKLALIDGST----GEFQD 93 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~--~~g~~~~~~~~~~~~~~~~~~----~~~~~ 93 (2280)
..++|+|||+|+|||||||.|+++- +||+||+++|+|||.+|+..+ ++| ...+++++.+++... .++..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rh--dVTLfEA~~rlGGha~Tv~~~~d~~g---~~vDtGfiVyn~~tYpnl~~Lf~~ 81 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRH--DVTLFEADRRLGGHANTVAGNTDGGG---VFVDTGFIVYNERTYPNLTRLFKT 81 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhccc--ceEEEeccccccCccceeeccccCCc---eeecceeEEecCCCcchHHHHHHH
Confidence 3578999999999999999999883 799999999999999998743 333 345777888877543 23344
Q ss_pred cccccchhhhhccccccchhhhhccc----------------------------cchh-----hHHHhhhhhhhHHHHHc
Q 037878 94 IKVADDYVSVISLTLELQDKAKESGR----------------------------IGVH-----AVSDLASDLTPTYLEDR 140 (2280)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~-----~~~~~~~~~~~~~l~~~ 140 (2280)
+++.. -...|++++......+++.. ++.. ......+....+|+.++
T Consensus 82 iGv~t-~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~ 160 (447)
T COG2907 82 IGVDT-KASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQR 160 (447)
T ss_pred cCCCC-cccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhc
Confidence 44443 33445555554443333321 1110 00001112235777777
Q ss_pred CCCC-------cchhhhhhhhcccccccccccHHHHHHHHhhcc------CCeEEEEcCCHHHHHHHHHhHCCCceEeCc
Q 037878 141 GFKS-------VPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSM------AGKIRRFKGGYTSLWQKLSKYLPTEVHCNS 207 (2280)
Q Consensus 141 ~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~gG~~~l~~~la~~lg~~I~l~t 207 (2280)
++.. .|+....|.+.. .+...+|...+..|+.... .+.|+++.||....+++|++.++.+|++++
T Consensus 161 ~f~~af~e~~l~P~~aaiwstp~--~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~ 238 (447)
T COG2907 161 NFGRAFVEDFLQPLVAAIWSTPL--ADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRT 238 (447)
T ss_pred CccHHHHHHhHHHHHHHHhcCcH--hhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccccceeecCC
Confidence 7665 344444444332 3467777777766664333 688999999999999999999988999999
Q ss_pred ceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCChhhHhhhccCCCChhhHhhhccceeeeeEE
Q 037878 208 EVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYT 287 (2280)
Q Consensus 208 ~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~ 287 (2280)
+|.+|++-.+|+ .+...+| ++-+||.||+| +. +.+......+.+++|..+++.+.|..+-+
T Consensus 239 ~V~~l~rlPdGv--~l~~~~G--~s~rFD~vViA--------------th-~dqAl~mL~e~sp~e~qll~a~~Ys~n~a 299 (447)
T COG2907 239 PVCRLRRLPDGV--VLVNADG--ESRRFDAVVIA--------------TH-PDQALALLDEPSPEERQLLGALRYSANTA 299 (447)
T ss_pred ceeeeeeCCCce--EEecCCC--Cccccceeeee--------------cC-hHHHHHhcCCCCHHHHHHHHhhhhhhcee
Confidence 999999988866 5666788 45699999997 33 33334334677888999999999999999
Q ss_pred EEEeecCcccCCceeEEEecCCCC---CCCCCCcce---eEEee---cCCCcEEEEecCCCCCCChHHHHHHHHHHHHhh
Q 037878 288 TVLKITGLEHLPVGFYYFGEYMDD---PATIGHPVA---MQKFF---ADTDIFLFWSYGNSVDITGPTVTEVAIKTVENM 358 (2280)
Q Consensus 288 ~i~~~~~l~~~p~~~~~~~~~~~~---~~~~~~~~~---~~~~~---~~~~~~~~~~~g~~~~~s~~e~~~~i~~~L~~~ 358 (2280)
+++.+..+ +|....-+..+... ......+.. +..+. ...+++ ...++....+...
T Consensus 300 Vlhtd~~l--mPrR~~Awaswny~~~~~~e~~~~~lty~mN~lq~l~~~~~~~--vtln~~~~~dpa~------------ 363 (447)
T COG2907 300 VLHTDASL--MPRRLRAWASWNYLGTVQWELCQGSLTYWMNRLQALISVRDYF--VTLNNRPWVDPAH------------ 363 (447)
T ss_pred EEeecccc--cccccccccccceeccccccccCcceeccHHHhhcccCCcceE--EEecCCcccChHH------------
Confidence 99999876 45433222222211 111111110 11111 122221 1122222122221
Q ss_pred cCccceEEEeecCCCCcccchhhhcchhhHHHHHHhcCcCCceeccccccccccccCchhhHHhh
Q 037878 359 GGVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSMALM 423 (2280)
Q Consensus 359 ~~~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~~~G~~~~~~~~~~~~~y~~~l~ 423 (2280)
++.+..+.||.+++++++ .++...++||.+++||||+||+-+|+|+..+..+...
T Consensus 364 -------v~~~~ty~HPlf~~~avr---aqq~l~alqg~~~twfcgAy~g~GFHeDg~~aGl~va 418 (447)
T COG2907 364 -------VIAERTYPHPLFDPEAVR---AQQELWALQGARRTWFCGAYFGRGFHEDGLQAGLAVA 418 (447)
T ss_pred -------hhHHhhcCCcCCCHHHHH---HHHHHHhhhcCCCCCcchhhhccccchhhhhhHHHHH
Confidence 222334789999999998 5665588999999999999999999999876665544
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=217.25 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=139.7
Q ss_pred CeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCCh
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSK 258 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~ 258 (2280)
+.+.+++||+++|++++++++..+|++|++|++|.++.+++ .+.+.+| +.+.||.||+|+|++
T Consensus 205 ~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~--~~~~~~g--~~~~~D~VI~t~p~~------------- 267 (444)
T COG1232 205 EKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGK--TIVDVGG--EKITADGVISTAPLP------------- 267 (444)
T ss_pred ccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCcc--EEEEcCC--ceEEcceEEEcCCHH-------------
Confidence 35778999999999999999988899999999999986655 5555677 468999999995544
Q ss_pred hhHhhhccCCCChhhHhhhccceeeeeEEEEEee--cCcccCCceeEEEecCCCCCCCCCCcceeEEeecCC--CcEEEE
Q 037878 259 PTESETQVMDMDELEKELFSKVQTIDYYTTVLKI--TGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADT--DIFLFW 334 (2280)
Q Consensus 259 ~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~--~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 334 (2280)
....+..- ......+....+....++++.. +..+.+|++++++.+..+.. ..+..+...++.... +..+++
T Consensus 268 -~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~ 342 (444)
T COG1232 268 -ELARLLGD---EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLR 342 (444)
T ss_pred -HHHHHcCC---cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEE
Confidence 33333221 1223344555554444444433 23344688888888887644 555555555554322 443333
Q ss_pred ec--CCC----CCCChHHHHHHHHHHHHhhc---CccceEEEeecCCCCcccchhhhcchhhHHHHHHhc-CcCCceecc
Q 037878 335 SY--GNS----VDITGPTVTEVAIKTVENMG---GVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQ-GQRNTYYVG 404 (2280)
Q Consensus 335 ~~--g~~----~~~s~~e~~~~i~~~L~~~~---~~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lq-g~~~~~~~G 404 (2280)
.+ +.. ..++|||+.+.++++|++++ ..|.+..+.||...+|+|...+.+. .+.+...++ .+.++..+|
T Consensus 343 ~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~--~~~ir~~l~~~y~gi~~~G 420 (444)
T COG1232 343 VEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDR--LEPIRAALKGAYPGIKSVG 420 (444)
T ss_pred EEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHH--HHHHHHhhccccCCeEEec
Confidence 22 221 34678999999999999984 3377899999999999999999874 555544565 345666666
Q ss_pred ccc
Q 037878 405 GLM 407 (2280)
Q Consensus 405 ~~~ 407 (2280)
+++
T Consensus 421 ~~~ 423 (444)
T COG1232 421 RYG 423 (444)
T ss_pred cCC
Confidence 654
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=205.95 Aligned_cols=211 Identities=11% Similarity=0.015 Sum_probs=147.9
Q ss_pred HHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEeCCCHhHHHHHHHHHHc
Q 037878 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLT-SRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRA 553 (2280)
Q Consensus 475 l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~-~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~a 553 (2280)
|.+.+++ +|+++|+++.++++.+.+++||+||.++++++|+.|++ . |+++||||+|+++|+++++++++||+++
T Consensus 2 ~~~~~~~--~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~---Gv~~GdrV~i~~~n~~~~~~~~~a~~~~ 76 (227)
T TIGR03089 2 LSPLLAA--DPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDEL---DAEPGSRVALDLPAHWQTAVWLLAAWST 76 (227)
T ss_pred hhhhhhh--CCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3445554 48999998764332123579999999999999999997 7 8999999999999999999999999999
Q ss_pred CCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-C-----------CC-CCccccccccccccc
Q 037878 554 KVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-W-----------PN-LPWLHTDSWVKNSKN 620 (2280)
Q Consensus 554 Ga~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~-----------~~-~~~~~~~~~~~~~~~ 620 (2280)
|++++|++. +++++++++.+......... . .. .......++.....
T Consensus 77 G~v~vp~n~--------------------s~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (227)
T TIGR03089 77 GVEVVLAGD--------------------PDADVVVTGPDRLAAAAGSGEVVALSLDPLGRRVAGELPPGVIDFAPEVR- 135 (227)
T ss_pred CCEEEeCCC--------------------CCCCEEEeCcchhhhcccCCceEEEeccccccCCCCCCCCcccchhhhhh-
Confidence 999999953 23344444333222111000 0 00 00000001110000
Q ss_pred cccccccccC-CCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHH
Q 037878 621 LLAENVVCFT-ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699 (2280)
Q Consensus 621 ~~~~~~~~~~-~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L 699 (2280)
. ........ ...++|++.|+||||+ +|+++.... ...+++++|+++ .+|++|..|+...++.++
T Consensus 136 ~-~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l 200 (227)
T TIGR03089 136 V-HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPL 200 (227)
T ss_pred c-cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHh
Confidence 0 00111111 3456899999999986 677765544 556789999999 999999999988999999
Q ss_pred HccceEEEeCccccccCHHHHHHHHhhccee
Q 037878 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRAT 730 (2280)
Q Consensus 700 ~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt 730 (2280)
..|+++++++ .| +|..+++.++++++|
T Consensus 201 ~~G~t~v~~~--rF--d~~~~l~~i~~~~vT 227 (227)
T TIGR03089 201 AAGGSLVLVT--HP--DPARLDQIAETERVT 227 (227)
T ss_pred ccCceEEEec--CC--CHHHHHHHHHhhcCC
Confidence 9999999984 34 999999999999986
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=202.30 Aligned_cols=325 Identities=23% Similarity=0.237 Sum_probs=216.4
Q ss_pred CCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH---cCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeC
Q 037878 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR---YKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFS 709 (2280)
Q Consensus 633 ~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~ 709 (2280)
.-++...|--||||||+|+-+..|+..+.......++. .+...+|++....-+....+-......+--.|++++-..
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~ 167 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS 167 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence 44667779999999999999999999876665555544 456778877655442222221122223333455544222
Q ss_pred ccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCC
Q 037878 710 PLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLS 789 (2280)
Q Consensus 710 ~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~ 789 (2280)
+ .+-+.-.+++..+++|++.++|+.+..+++..+..... .+-.++|.+++|+|+++++..+.+.+.+
T Consensus 168 ~----g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~---~~~~~lk~~i~gaE~~see~R~~ie~~~------ 234 (438)
T COG1541 168 G----GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGID---PDKLSLKKGIFGAEPWSEEMRKVIENRF------ 234 (438)
T ss_pred C----ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC---hhhcceeEEEEecccCCHHHHHHHHHHh------
Confidence 2 25577889999999999999999999999888776411 3345799999999999999999998886
Q ss_pred CcccccccCccccccce--ecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCccc
Q 037878 790 QGVMAPGYGLAENCVFV--SCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI 867 (2280)
Q Consensus 790 ~~~v~n~YG~TE~~~~~--~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~ 867 (2280)
++..++.||.||..+.. -|....+.. ..-+..-+.|+||++++.+ +.|+.|||++..-. +
T Consensus 235 g~~~~diYGltE~~g~g~~eC~~~~glh---------------i~eD~~~~Ei~dP~t~e~l-~dge~GelV~T~L~--~ 296 (438)
T COG1541 235 GCKAFDIYGLTEGFGPGAGECTERNGLH---------------IWEDHFIFEIVDPETGEQL-PDGERGELVITTLT--K 296 (438)
T ss_pred CCceeeccccccccCCcccccccccCCC---------------cchhhceeeeecCCcCccC-CCCCeeEEEEEecc--c
Confidence 56789999999997652 222211111 1225678899999987555 79999999997622 1
Q ss_pred ccCCCchhhHHHHhhhccCCCCCceeecCcEEEEEC-----Ce-----EEEEecCCCeEEECCeeechHHHHHHHHhccC
Q 037878 868 GYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID-----GK-----FFITGRIKDLIIVAGRNVYSADVEKTVESSTE 937 (2280)
Q Consensus 868 GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~d-----G~-----l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~ 937 (2280)
+.+ |. -=|||||++++.+ |. ..+.||.||+++++|.+|+|..||.+|.+.++
T Consensus 297 ----------~~~---Pl-----IRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~ 358 (438)
T COG1541 297 ----------EGM---PL-----IRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPE 358 (438)
T ss_pred ----------cCc---ce-----EEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccC
Confidence 111 00 1389999999942 32 46899999999999999999999999999988
Q ss_pred CcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHH---HHHHHHHHHHHhcCcceeEEEEecCCCcc
Q 037878 938 HIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKD---VIENIKTRVVEEHGVTVASVKLIKPRTMS 1014 (2280)
Q Consensus 938 v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~---l~~~l~~~l~~~~~~~~~~~~lv~~~~lP 1014 (2280)
+..-- -+++.. + .....+.+.++..+......+ +.+.+...+....... .-+.++.+.++|
T Consensus 359 ~~~~y-qi~~~~-~-------------~~~d~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~v~~v~~g~l~ 422 (438)
T COG1541 359 VTPHY-QIILTR-N-------------GGLDELTVRVELENEAEELEDERRLAKKLIKNIKSELGVR-VEVELVEPGELP 422 (438)
T ss_pred CCceE-EEEEec-C-------------CCCceEEEEEEecCcccchHHHHHHHHHHHHHHHhhcCCc-eEEEEEecccee
Confidence 75211 122211 1 112223333444332111111 2235555555544443 345677889999
Q ss_pred CCCCcccch
Q 037878 1015 KTTSGKIKR 1023 (2280)
Q Consensus 1015 ~t~sGKvdR 1023 (2280)
+|.. |..|
T Consensus 423 r~~~-K~kr 430 (438)
T COG1541 423 RTEG-KAKR 430 (438)
T ss_pred cccC-ceeE
Confidence 9875 7655
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-18 Score=223.84 Aligned_cols=212 Identities=13% Similarity=0.141 Sum_probs=131.9
Q ss_pred CeEEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCc-cEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCC
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTT-VGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPT 256 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~-v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~ 256 (2280)
...+.++||++.|+++|++.++ .+|++|++|++|++++++ +.+.+.+.+|+ ++++||+||+|+|.+....+.+
T Consensus 229 ~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~P~~~l~~ll~---- 303 (496)
T PLN02576 229 QTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGK-VNVTAKAVVMTAPLYVVSEMLR---- 303 (496)
T ss_pred CeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCc-eeEEeCEEEECCCHHHHHHHhc----
Confidence 3467889999999999999997 789999999999998776 76666665663 4689999999976664333322
Q ss_pred ChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC--ccc------CCceeEEEecCCCCCCCCCCcceeEEee--c
Q 037878 257 SKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG--LEH------LPVGFYYFGEYMDDPATIGHPVAMQKFF--A 326 (2280)
Q Consensus 257 ~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~--l~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 326 (2280)
+..+..+..+.++.+.+.....+.... ++. ...++++..+..+....++..+....+. .
T Consensus 304 -----------~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~ 372 (496)
T PLN02576 304 -----------PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRA 372 (496)
T ss_pred -----------ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCC
Confidence 122233445555555555444433221 111 1135666655443322222121111111 1
Q ss_pred CCCcEEEEec-C-CC----CCCChHHHHHHHHHHHHhhcC-----ccceEEEeecCCCCcccchhhhcchhhHHHHHHhc
Q 037878 327 DTDIFLFWSY-G-NS----VDITGPTVTEVAIKTVENMGG-----VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQ 395 (2280)
Q Consensus 327 ~~~~~~~~~~-g-~~----~~~s~~e~~~~i~~~L~~~~~-----~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lq 395 (2280)
+.+...+..| + .. .+++++++.+.++++|+++.+ .|+.....+|....|+|++...+. .+++...++
T Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~--~~~~~~~l~ 450 (496)
T PLN02576 373 PEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDV--LEAAEKMEK 450 (496)
T ss_pred CCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHH--HHHHHHHHH
Confidence 1222222222 2 21 447899999999999999743 356677888888899999876542 445544344
Q ss_pred Cc--CCceecccccc
Q 037878 396 GQ--RNTYYVGGLMA 408 (2280)
Q Consensus 396 g~--~~~~~~G~~~~ 408 (2280)
.. .+++++|.++.
T Consensus 451 ~~~~~~l~~aG~~~~ 465 (496)
T PLN02576 451 DLGLPGLFLGGNYRG 465 (496)
T ss_pred hcCCCCEEEeccccC
Confidence 44 68999998875
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-18 Score=212.72 Aligned_cols=526 Identities=22% Similarity=0.328 Sum_probs=337.2
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHH-HHHhcCCCCCCCCCEEEEEeCCC--HhHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAH-KLLTSRKPVIKPGDRVLLVYVPG--LDFVDA 546 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~-~L~~~~~~Gv~~Gd~V~i~~~~s--~e~~va 546 (2280)
.+...+++...+ .+..+|.++.|+.|+ ..++||..+..++.+.|+ .|... |..++|+|.++...+ .|+++.
T Consensus 95 d~~avl~~~~nh--s~~~ta~i~id~kgk-~~~~twdkl~~rA~k~a~~~l~ks---gl~~~~~vvL~Y~~~e~ie~~is 168 (1363)
T KOG3628|consen 95 DIIAVLRYRRNH--SATSTAHICIDKKGK-ATSITWDKLLNRAEKVAHVELNKS---GLKPGDRVVLYYRKCEAIEFLIS 168 (1363)
T ss_pred chHHHHHhhccC--CCCCceEEEEcCCCc-eeeeeHHHHHHHHHhhccHHhhcc---CCCCCcEEEEEEEhhhhhHHhhh
Confidence 344455555544 477889999999998 689999999999999999 55554 999999999999887 999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCC-----CCcccccccccccccc
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPN-----LPWLHTDSWVKNSKNL 621 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 621 (2280)
.++|...|.+.+|+.+.+..+. +..+.+....+++++............++. +.+....++. ..
T Consensus 169 l~gc~l~g~~~vp~~e~~s~~e-------l~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k----~~ 237 (1363)
T KOG3628|consen 169 LFGCFLLGIVAVPLSELSSSEE-------LKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFK----GN 237 (1363)
T ss_pred hccccccceeeccchhhhhhhh-------hhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhccccc----ce
Confidence 9999999999999977665554 777888888888887765443222111110 0111111111 00
Q ss_pred ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHH--------------------HHHcCCCCCcEEEE
Q 037878 622 LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM--------------------RKRYKSTSKTVLVS 681 (2280)
Q Consensus 622 ~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~--------------------~~~~~~~~~d~~l~ 681 (2280)
........+..... ..||-||++++|+--|++.+|+ +....+.+ ...++.+..++++.
T Consensus 238 ~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 238 YTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred eehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 00011111222222 8999999999999999999998 54433322 12234566777887
Q ss_pred EcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhccccc------ccc
Q 037878 682 WLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK------VRS 755 (2280)
Q Consensus 682 ~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~------~~~ 755 (2280)
....+--.|++.+++.++++|.|.+-++. .+...|..|..++.+++++++..--..+..........+.. ...
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~-~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t 394 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPK-EVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKT 394 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCch-hhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccC
Confidence 77777788888889999999999887764 45678899999999999999765533333322221111111 112
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHHHh-cCCCCCCccccccc-----------------CccccccceecccCCC----
Q 037878 756 FDLSSMKFLMVAAEPVRQTTVKRFVELT-RPFGLSQGVMAPGY-----------------GLAENCVFVSCAYGQG---- 813 (2280)
Q Consensus 756 ~~l~~Lr~l~~gGe~l~~~l~~~~~~~~-~~~g~~~~~v~n~Y-----------------G~TE~~~~~~~~~~~~---- 813 (2280)
.|++++|.+++.-+.+.++.-+-..+++ .+.|-.. .--.| +++|.+...-..+...
T Consensus 395 ~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~--~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~ 472 (1363)
T KOG3628|consen 395 PDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN--VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTL 472 (1363)
T ss_pred CCccceeeeEEeeeecchHHHHHHHHhhcccccCcC--cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccC
Confidence 5789999999999999987543322221 1111111 11122 2233332221111100
Q ss_pred -------------CceeecCCCc---eeeccccCCCC-CceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhh
Q 037878 814 -------------KPIILDWQGR---VCCGYVDQNDP-DVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELS 876 (2280)
Q Consensus 814 -------------~~~~~~~~g~---~~~g~vG~p~p-g~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t 876 (2280)
..+.++.... .....+|.-.| +..+.|++++.+ .++.++++|||||.++++..+||.-+..|
T Consensus 473 ~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~-~LC~~~eVGEIwVsS~~~~~~~~al~~~t 551 (1363)
T KOG3628|consen 473 PGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTN-QLCKTDEVGEIWVSSNSLGKLFYALDKQT 551 (1363)
T ss_pred ccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcc-cccccCcceeEEEecCCcccceeeccccc
Confidence 0000000000 01111222222 466778888764 67789999999999999999999988888
Q ss_pred HHHHhhhccC-----CCCCceeecCcEEEEECCeEEEEecCCCeEEE-CCeeechHHHHHHHHhc-c------CCcCCce
Q 037878 877 QITFRNELQN-----NRGRKYTRTGDLGRIIDGKFFITGRIKDLIIV-AGRNVYSADVEKTVESS-T------EHIRPGC 943 (2280)
Q Consensus 877 ~~~f~~~~~~-----~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi-~G~rI~~~EIE~~L~~~-p------~v~~~~~ 943 (2280)
...|...+.. .....+.|||=+|++.+|.++|+|-++|++-- .|.+.+..+|-+.-..+ + +|..+..
T Consensus 552 ~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~ 631 (1363)
T KOG3628|consen 552 ENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFD 631 (1363)
T ss_pred cceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEE
Confidence 8888654322 23468999999999999999999988877655 88888877665432221 1 2332222
Q ss_pred eEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC--HHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCccc
Q 037878 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD--KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKI 1021 (2280)
Q Consensus 944 aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKv 1021 (2280)
++++- ...++++++.++..... -+....+-+.+..-+++....+.+++...||+|+-|-|
T Consensus 632 ~saf~------------------~E~~~Vv~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi 693 (1363)
T KOG3628|consen 632 VSAFE------------------DEHIVVVVLESPDATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGI 693 (1363)
T ss_pred Eeeee------------------cceEEEEEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCcccccc
Confidence 33332 12334444333332111 23344555566666777777777888899999998889
Q ss_pred chHHHHHHhhcCCCC
Q 037878 1022 KRFECLKQFVDGTLN 1036 (2280)
Q Consensus 1022 dR~~L~~~~~~~~~~ 1036 (2280)
.-.+++++|.++.+.
T Consensus 694 ~~~~~k~~F~~G~L~ 708 (1363)
T KOG3628|consen 694 HNNECKQAFLEGSLP 708 (1363)
T ss_pred ccHHHHHHHHcCCCC
Confidence 999999999999864
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=215.92 Aligned_cols=207 Identities=15% Similarity=0.234 Sum_probs=131.3
Q ss_pred EEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCChh
Q 037878 181 IRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKP 259 (2280)
Q Consensus 181 ~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~ 259 (2280)
+.+++||+++|++++++.++ .+|++|++|++|+++++++ .+++.+| ++++||+||+|+|++....+ .|+
T Consensus 217 ~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~--~v~~~~g--~~~~ad~VI~t~P~~~~~~l--l~~---- 286 (462)
T TIGR00562 217 FQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNY--TLELDNG--VTVETDSVVVTAPHKAAAGL--LSE---- 286 (462)
T ss_pred eEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcE--EEEECCC--cEEEcCEEEECCCHHHHHHH--hcc----
Confidence 67899999999999999996 7899999999999988876 5566777 47899999999776633222 122
Q ss_pred hHhhhccCCCChhhHhhhccceeeeeEEEEEeecC--cccCCceeEEEecCCCCCCCCCCcceeEEee--cCCCcEEEEe
Q 037878 260 TESETQVMDMDELEKELFSKVQTIDYYTTVLKITG--LEHLPVGFYYFGEYMDDPATIGHPVAMQKFF--ADTDIFLFWS 335 (2280)
Q Consensus 260 ~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~--l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 335 (2280)
........+.++.+.......+.... ++..+.+++|+.+..+.....+..+....+. .+.+...+..
T Consensus 287 ---------~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~ 357 (462)
T TIGR00562 287 ---------LSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTA 357 (462)
T ss_pred ---------cCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEE
Confidence 22223334455555555544443221 2222356777766554322222222211111 1222222222
Q ss_pred c-CCC-----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCCCCcccchhhhcchhhHHHHHHhcC-cCCceeccc
Q 037878 336 Y-GNS-----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQG-QRNTYYVGG 405 (2280)
Q Consensus 336 ~-g~~-----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg-~~~~~~~G~ 405 (2280)
+ +.. .+++++++.+.++++|+++.+ .|....+.+|...+|++++...+. .+++...++. ..+++.+|.
T Consensus 358 ~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~--~~~i~~~l~~~~~~l~l~G~ 435 (462)
T TIGR00562 358 YIGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQR--LKEARELLESAYPGVFLTGN 435 (462)
T ss_pred EeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHH--HHHHHHHHHhhCCCEEEecc
Confidence 2 221 347889999999999999742 267889999999999998876442 4444333443 468999998
Q ss_pred ccc
Q 037878 406 LMA 408 (2280)
Q Consensus 406 ~~~ 408 (2280)
++.
T Consensus 436 ~~~ 438 (462)
T TIGR00562 436 SFE 438 (462)
T ss_pred ccC
Confidence 865
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=213.51 Aligned_cols=210 Identities=15% Similarity=0.168 Sum_probs=129.6
Q ss_pred CeEEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCC
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTS 257 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~ 257 (2280)
..+++++||+++|+++|++.++ ++|++|++|++|+.+++++ .+++.+| +++.||+||+|+|......+.+.|+.+
T Consensus 216 ~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~--~v~~~~g--~~~~ad~VI~a~p~~~~~~ll~~~~l~ 291 (463)
T PRK12416 216 KKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRY--EISFANH--ESIQADYVVLAAPHDIAETLLQSNELN 291 (463)
T ss_pred CceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEE--EEEECCC--CEEEeCEEEECCCHHHHHhhcCCcchh
Confidence 4577899999999999999985 4799999999999988865 5666677 468999999998777555554433221
Q ss_pred hhhHhhhccCCCChhhHhhhccceeeeeEEEEEeec-C-cccCCceeEEEecCCCCCCCCCCcceeEEee--cCCCcEEE
Q 037878 258 KPTESETQVMDMDELEKELFSKVQTIDYYTTVLKIT-G-LEHLPVGFYYFGEYMDDPATIGHPVAMQKFF--ADTDIFLF 333 (2280)
Q Consensus 258 ~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~-~-l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 333 (2280)
..+.++.+.......+..+ . ....+.++++..+..+.....+..+....|. .+....++
T Consensus 292 -----------------~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 354 (463)
T PRK12416 292 -----------------EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLV 354 (463)
T ss_pred -----------------HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEE
Confidence 1122233333333322222 1 1111356777766554322111111211121 12222223
Q ss_pred E-ecC---CC----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCCCCcccchhhhcchhhHHHHHHhcC-cCCce
Q 037878 334 W-SYG---NS----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQG-QRNTY 401 (2280)
Q Consensus 334 ~-~~g---~~----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg-~~~~~ 401 (2280)
. +++ .. .+++++|+.+.++++|+++.+ .|....+.+|....|++...+.+ ..+.+...++. .++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~--~~~~~~~~l~~~~~~l~ 432 (463)
T PRK12416 355 RMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQ--AVQSLQEKMMNLYPNIY 432 (463)
T ss_pred EEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHH--HHHHHHHHHHhhCCCeE
Confidence 3 332 11 346899999999999999743 47788999999999999766544 13333223432 47999
Q ss_pred eccccccccc
Q 037878 402 YVGGLMAFEL 411 (2280)
Q Consensus 402 ~~G~~~~~~~ 411 (2280)
++|+++.-..
T Consensus 433 ~aG~~~~g~~ 442 (463)
T PRK12416 433 LAGASYYGVG 442 (463)
T ss_pred Eecccccccc
Confidence 9998865433
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=198.51 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=126.4
Q ss_pred CeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCCh
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSK 258 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~ 258 (2280)
...+...|||+.|.++++++++..|+++++|.+|.+.+++| +|++.+. .++++|.||+|+|+.++.+|+|.|..++
T Consensus 199 ~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV--~Vt~~~~--~~~~ad~~i~tiPl~~l~qI~f~P~l~~ 274 (450)
T COG1231 199 TQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGV--TVTADDV--GQYVADYVLVTIPLAILGQIDFAPLLPA 274 (450)
T ss_pred chhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCeE--EEEeCCc--ceEEecEEEEecCHHHHhhcccCCCCCH
Confidence 33444459999999999999999999999999999999966 6777673 3789999999999999999999999999
Q ss_pred hhHhhhccCCCChhhHhhh---ccceeeee-EE-EEEeecCcccCCceeEEEecCCCCCCCCCCcceeE-EeecCCCcEE
Q 037878 259 PTESETQVMDMDELEKELF---SKVQTIDY-YT-TVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQ-KFFADTDIFL 332 (2280)
Q Consensus 259 ~~~~~l~~~~l~~~~k~~~---~~~~~~~~-~~-~i~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 332 (2280)
+..+.+...++....|... +.|+.... +. ..+.+. +..+..+.++ . ...+..+-+. +..++.. .
T Consensus 275 ~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~-----~~~~i~~~s~-~--~~~G~gVl~g~~~~g~~A--~ 344 (450)
T COG1231 275 EYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDL-----GLGFISYPSA-P--FADGPGVLLGSYAFGDDA--L 344 (450)
T ss_pred HHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecC-----CcceEecCcc-c--cCCCceEEEeeeeccccc--e
Confidence 9999998888877666432 22332222 22 222222 3223322222 1 1111111111 1111111 1
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHhhcCc-----cceEEEeecCC------CCcccchhhhcchhhHHHHHHhcCcCCce
Q 037878 333 FWSYGNSVDITGPTVTEVAIKTVENMGGV-----IENVVLQRRFK------YFPHVNSKDMKDGFYDRLEYELQGQRNTY 401 (2280)
Q Consensus 333 ~~~~g~~~~~s~~e~~~~i~~~L~~~~~~-----p~~~~~~~~~~------~~p~~s~~~~~~g~~~~l~~~lqg~~~~~ 401 (2280)
.+ ..++++|.++.++..++++-++ .+.....+|.. +..-+++...+ -+|..+ ..+...++
T Consensus 345 ~~-----~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~-~~~~~l---~~p~gRIh 415 (450)
T COG1231 345 VI-----DALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRT-KLYPTL---PAPHGRIH 415 (450)
T ss_pred eE-----ecCCHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccc-cccccc---cCCCCceE
Confidence 11 4578999999999999998542 22223334321 23334444433 123333 46667777
Q ss_pred ecc
Q 037878 402 YVG 404 (2280)
Q Consensus 402 ~~G 404 (2280)
|+|
T Consensus 416 ~Ag 418 (450)
T COG1231 416 FAG 418 (450)
T ss_pred Eee
Confidence 776
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-17 Score=213.87 Aligned_cols=208 Identities=22% Similarity=0.310 Sum_probs=123.2
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCC-ceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPT-EVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPT 256 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~-~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~ 256 (2280)
...++.+++|++.+++++++.++. +|++|++|++|+.+++++ .+.+.+| ++++||+||+|+|+++...+.+.|
T Consensus 210 ~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~--~v~~~~g--~~~~~d~vI~a~p~~~~~~l~~~~-- 283 (451)
T PRK11883 210 KGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGY--EIVLSNG--GEIEADAVIVAVPHPVLPSLFVAP-- 283 (451)
T ss_pred CCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeE--EEEECCC--CEEEcCEEEECCCHHHHHHhccCh--
Confidence 346778999999999999999976 899999999999988765 5666677 478999999998887655552211
Q ss_pred ChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeec-CcccCCceeEEEecCCCCCCCCCCcceeEEe--ecCCC-cEE
Q 037878 257 SKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKIT-GLEHLPVGFYYFGEYMDDPATIGHPVAMQKF--FADTD-IFL 332 (2280)
Q Consensus 257 ~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~-~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~ 332 (2280)
+... .+..+.+.......+... .++..+..++++.+..++....+..+....+ ..+.+ ...
T Consensus 284 --~~~~-------------~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~ 348 (451)
T PRK11883 284 --PAFA-------------LFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLL 348 (451)
T ss_pred --hHHH-------------HHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEE
Confidence 1111 122233333222222222 1122344455544322211111110111011 11111 222
Q ss_pred EEecCCC-----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCCCCcccchhhhcchhhHHHHHHhcCcCCceecc
Q 037878 333 FWSYGNS-----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVG 404 (2280)
Q Consensus 333 ~~~~g~~-----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~~~G 404 (2280)
...++.. .+++++++.+.+++.|+++.+ .++.....+|...+|.+++...+. .+++...+....++|++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~--~~~l~~~l~~~~~l~~aG 426 (451)
T PRK11883 349 RLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIER--VAELRAGLPHYPGLYVAG 426 (451)
T ss_pred EEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHH--HHHHHHhhhhCCCEEEEC
Confidence 2223321 456889999999999999832 366788888998899888765431 333323333346899999
Q ss_pred cccc
Q 037878 405 GLMA 408 (2280)
Q Consensus 405 ~~~~ 408 (2280)
.++.
T Consensus 427 ~~~~ 430 (451)
T PRK11883 427 ASFE 430 (451)
T ss_pred cccC
Confidence 8753
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=193.95 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=79.7
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.+... ....+.+.||++|.|+.++.+ .++++|||+|+||.++.|.++++||++++|+++|
T Consensus 102 t~IG~~~~i~~~--~~I~hd~~IG~~v~i~~~~~i-----------~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs 168 (255)
T PRK12461 102 TRIGNDNLLMAY--SHVAHDCQIGNNVILVNGALL-----------AGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGS 168 (255)
T ss_pred EEEcccceeccC--cEECCCCEECCCcEECCCCcc-----------CCceEECCCeEEeCCCEECCCCEECCCcEECCCc
Confidence 467777776655 222334455555555554444 3789999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce------eeecccchhhHHHHHhHHHHHHHHHh
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV------MIKNTMHALDDRIEEMDMKYKKIVGN 1700 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~------~~~~~~~~~~~~le~~~p~~~~~v~~ 1700 (2280)
+|++| +||++++.|+||.. -++|.. ...+.++.++..|+.+.++
T Consensus 169 ~V~~d--Vpp~~i~~G~pa~~~~~n~vgl~r~g-~~~~~~~~~~~~~~~~~~~ 218 (255)
T PRK12461 169 RISKD--VPPYCMMAGHPTNVHGLNAVGLRRRG-FSSRAIRALKRAYKIIYRS 218 (255)
T ss_pred eEecc--CCCCeEEecCcceEeccchhhhhhcC-CCHHHHHHHHHHHHHHHhc
Confidence 99999 99999999999742 123332 3444555666667666543
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=192.67 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=77.8
Q ss_pred CeeCCCceeccCCcccCC--------cceEECCCcEeCCCcEEeecccCCCce-EeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1574 AKIGRYCSIRAINPVSCP--------QQVTLGAGVHLGDFSRIIPGFYSSIGF-IFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~--------~~~~iG~~~~i~~~~~i~~~~~~~~~~-~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
+.||++|||+.++.++.. +.+.|++-|.||++|.|+.+....+.. ..|+++||++|.||.++.|..+.+||
T Consensus 203 V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~Ig 282 (338)
T COG1044 203 VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIG 282 (338)
T ss_pred EEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEc
Confidence 789999999998877643 233333334556666665555544443 77889999999999999999999999
Q ss_pred CCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1645 RDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
|++.|++++.|+++ |+++..|.|.|+
T Consensus 283 D~~~I~~~~~v~~~--i~~~~~~gg~P~ 308 (338)
T COG1044 283 DGVTIGARSGVMAS--ITEPGYSGGIPA 308 (338)
T ss_pred CCCEEecccccccc--cCCCceeccCCC
Confidence 99999999999999 999999999995
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=193.78 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=66.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|+.++ ...+.+.||+++.|+.++.+ .++++|||+|+||.++.|.++++||++++||++|
T Consensus 106 t~IG~~~~I~~~~--~I~h~~~IG~~v~i~~~~~i-----------~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs 172 (262)
T PRK05289 106 TRIGDNNLLMAYV--HVAHDCVVGNHVILANNATL-----------AGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMS 172 (262)
T ss_pred eEECCceEECCCC--EECCeEEECCCeEECCcccc-----------ccccccCCcEEEeecceecCCCEECCCCEEeeec
Confidence 4566666666552 22334445555555444444 3788999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|++| +|+++++.|+|+..
T Consensus 173 ~V~~d--i~~~~~~~G~pa~~ 191 (262)
T PRK05289 173 GVSQD--VPPYVLAEGNPARL 191 (262)
T ss_pred ceecc--CCCCeEEecccCeE
Confidence 99999 99999999999744
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=194.94 Aligned_cols=329 Identities=20% Similarity=0.220 Sum_probs=173.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeecccceEEec------CC--CCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALID------GS--TGEF 91 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~------~~--~~~~ 91 (2280)
.+.+|+|||||+|||+||.+|-+.|..+|+|+|++||+|||++|+.+...-++++..+.++..-+. .. ...+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~ 99 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLL 99 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCcccee
Confidence 346899999999999999999988887899999999999999999988776777666555511000 00 0000
Q ss_pred eeccccc-chhhhhc----cccccchhhhhc-------ccc-----chhhHHHhhhhhhhHHHHHcCCCCcchhhh---h
Q 037878 92 QDIKVAD-DYVSVIS----LTLELQDKAKES-------GRI-----GVHAVSDLASDLTPTYLEDRGFKSVPKSVA---Y 151 (2280)
Q Consensus 92 ~~~~~~~-~~~~~~~----~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~---~ 151 (2280)
...+... +...... +.........+. .+. .......+......+.+............. +
T Consensus 100 ~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~~~~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~~~~~ 179 (498)
T KOG0685|consen 100 EVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEIAHDEGSVGEYLNSEFWDELRGPENPEIDKTLAEEIL 179 (498)
T ss_pred ccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccccCccccHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 0000000 0000000 000000000000 000 000111111111111111000000011111 1
Q ss_pred hhhccc---ccccccccHHHHHHHHhhccC-C--eEEEEcCCHHHHHHHHHhHCC---------CceEeCcceEEEEEcC
Q 037878 152 GYTASG---YGFVQDMPYAYIHEFTRTSMA-G--KIRRFKGGYTSLWQKLSKYLP---------TEVHCNSEVLAIRRDS 216 (2280)
Q Consensus 152 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~gG~~~l~~~la~~lg---------~~I~l~t~V~~I~~~~ 216 (2280)
..+... ....+.+....+..+...... + .....+.|+..+.+-|++.+. .+++++++|.+|+.++
T Consensus 180 ~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~ 259 (498)
T KOG0685|consen 180 NVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN 259 (498)
T ss_pred HHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCC
Confidence 111100 011122222333332222221 2 344567799999999987652 2455669999999875
Q ss_pred CccEEEEEeCCCceEEEEeCEEEEcCCcccccc---cccCCCCChhhHhhhccCCCChhhHhhhccceeeeeEE-----E
Q 037878 217 TTVGVDVKHSNGECEVMEFDKIIISGAFPVKNG---KFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYT-----T 288 (2280)
Q Consensus 217 ~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~---i~f~p~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~-----~ 288 (2280)
.+ .|.+++.|| +.+.||+||+|+|++|++. .-|.|++|..++.++..+..+...|- |-.+....+.. .
T Consensus 260 ~~-~v~l~c~dg--~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~Ki-FLE~E~pfwp~~~~~i~ 335 (498)
T KOG0685|consen 260 TG-EVKLRCSDG--EVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKI-FLEFEEPFWPSDWNGIQ 335 (498)
T ss_pred CC-cEEEEEeCC--cEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceE-EEEccCCCCCCCCceeE
Confidence 33 478899999 5899999999999999776 34999999999999999999988774 33333222211 1
Q ss_pred EEee-cCcccCCceeEEEecCCCCCCCCCCcceeEEeecCCCcEEEEecCCC----CCCChHHHHHHHHHHHHhhcCc
Q 037878 289 VLKI-TGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTDIFLFWSYGNS----VDITGPTVTEVAIKTVENMGGV 361 (2280)
Q Consensus 289 i~~~-~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~s~~e~~~~i~~~L~~~~~~ 361 (2280)
.+.. ..+.++-... . ...-....+......+++..-|..|.. ..++|+|+.+.+..-|+++.+.
T Consensus 336 ~lw~~e~l~e~r~~~----~-----~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n 404 (498)
T KOG0685|consen 336 LLWLDEDLEELRSTL----D-----AWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKN 404 (498)
T ss_pred EEEecCcHHHHhhhh----H-----HHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCC
Confidence 1111 1111100000 0 000011122222223334444444433 5689999999999999998643
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-16 Score=204.87 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=77.3
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccc--ccccCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKN--GKFYRSP 255 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~--~i~f~p~ 255 (2280)
.+..+.+.||+++|+++|++.+ +|++|++|++|+.++++| .|.+ ++ ++++||+||+|+|+++++ .+.|.|+
T Consensus 346 ~G~~~~i~GG~~~Li~aLA~~L--~IrLnt~V~~I~~~~dGV--tV~t-~~--~~~~AD~VIVTVPlgVLk~~~I~F~Pp 418 (738)
T PLN02529 346 GGDHCFLAGGNWRLINALCEGV--PIFYGKTVDTIKYGNDGV--EVIA-GS--QVFQADMVLCTVPLGVLKKRTIRFEPE 418 (738)
T ss_pred CCceEEECCcHHHHHHHHHhcC--CEEcCCceeEEEEcCCeE--EEEE-CC--EEEEcCEEEECCCHHHHHhccccCCCC
Confidence 4567789999999999999977 599999999999988876 4554 34 478999999999999987 6899999
Q ss_pred CChhhHhhhccCCCChhhHh
Q 037878 256 TSKPTESETQVMDMDELEKE 275 (2280)
Q Consensus 256 ~~~~~~~~l~~~~l~~~~k~ 275 (2280)
+|+.+...+..+.++...|.
T Consensus 419 LP~~K~~AI~rL~yG~v~KV 438 (738)
T PLN02529 419 LPRRKLAAIDRLGFGLLNKV 438 (738)
T ss_pred CCHHHHHHHHcCCCceeEEE
Confidence 99999999888887766654
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=167.77 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=102.5
Q ss_pred eeCCCceeccCCcccC--CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccC
Q 037878 1575 KIGRYCSIRAINPVSC--PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~--~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~ 1652 (2280)
+||++++|++++.++. ...++|||+|+|||+++| ..|+||++||||++++|+.|++||++|+||++
T Consensus 52 ~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aiv------------HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAg 119 (176)
T COG0663 52 RIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVV------------HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAG 119 (176)
T ss_pred EECCCceecCCeEEecCCCCCeEECCCcEEcCccEE------------EEeEECCCcEEecCceEeCCcEECCCcEEccC
Confidence 6888888888766543 468999999999999999 56999999999999999999999999999999
Q ss_pred ccccCCCccCCCcEEecCCCceeeecccchhhHHHHHhHHHHHHHHHhhhhhh
Q 037878 1653 SVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSANL 1705 (2280)
Q Consensus 1653 s~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~ 1705 (2280)
|+|+.++++|++++++|+| .+..|...++....++....+|.++.+++....
T Consensus 120 alV~~~k~~p~~~L~~G~P-ak~~r~l~~~~~~~~~~~a~~Yv~~~~~~~~~~ 171 (176)
T COG0663 120 ALVTPGKEIPGGSLVVGSP-AKVVRPLDDEELAWLRENAENYVKLADRYLAGL 171 (176)
T ss_pred CcccCCcCCCCCeEeecCc-ceeeecCChhHhhhhhHhHHHHHHHHHHHhhhh
Confidence 9999999999999999999 666677776667777777888888888776544
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=200.84 Aligned_cols=210 Identities=17% Similarity=0.223 Sum_probs=116.0
Q ss_pred eEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEE--eCCCceEEEEeCEEEEcCCcccccccccCC
Q 037878 180 KIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVK--HSNGECEVMEFDKIIISGAFPVKNGKFYRS 254 (2280)
Q Consensus 180 ~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~--t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p 254 (2280)
.+..++||++.|+++|++.+ |++|++|++|++|..+++++.+.+. ..+|+.+.++||+||+|+|+.....+ +.|
T Consensus 209 ~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~-l~~ 287 (479)
T PRK07208 209 EFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAA-LDP 287 (479)
T ss_pred EEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHh-cCC
Confidence 45567999999999998766 7899999999999998776433333 23464346899999999776532211 112
Q ss_pred CCChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCCceeEEEecCCCCCCCCCCcceeEEeecCCC--cEE
Q 037878 255 PTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTD--IFL 332 (2280)
Q Consensus 255 ~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 332 (2280)
+.+ ...+..+..+.+.......+..+.-+..+..+.|+..........-..........+.+ ...
T Consensus 288 ~~~-------------~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l 354 (479)
T PRK07208 288 PPP-------------PEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWL 354 (479)
T ss_pred CCC-------------HHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEE
Confidence 221 12222233344433322222222211123333332211100000000000000001111 111
Q ss_pred --EEe-c--CCCCCCChHHHHHHHHHHHHhhcCc----cceEEEeecCCCCcccchhhhcchhhHHHHHHhcCcCCceec
Q 037878 333 --FWS-Y--GNSVDITGPTVTEVAIKTVENMGGV----IENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYV 403 (2280)
Q Consensus 333 --~~~-~--g~~~~~s~~e~~~~i~~~L~~~~~~----p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~~~ 403 (2280)
.+. + ....+++|+++.+.++++|++++.. +....+.++....|+|+....+. .+++...++..++.+++
T Consensus 355 ~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~--~~~~~~~~~~~~~l~la 432 (479)
T PRK07208 355 GLEYFCFEGDDLWNMSDEDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERN--VEIIRDLLDHFPNLHLV 432 (479)
T ss_pred EEEEEccCCCccccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHH--HHHHHHHHHhcCCceee
Confidence 111 1 1124678999999999999998521 56677888999999998877653 34442234566899999
Q ss_pred cc
Q 037878 404 GG 405 (2280)
Q Consensus 404 G~ 405 (2280)
|-
T Consensus 433 Gr 434 (479)
T PRK07208 433 GR 434 (479)
T ss_pred cc
Confidence 93
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=205.38 Aligned_cols=201 Identities=14% Similarity=0.151 Sum_probs=119.7
Q ss_pred EEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccc--ccccCCCCChh
Q 037878 182 RRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKN--GKFYRSPTSKP 259 (2280)
Q Consensus 182 ~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~--~i~f~p~~~~~ 259 (2280)
..+.+|++.+++++++.+ +|++|++|++|+++++++ .|++.+| +++.||+||+|+|+++.+ .+.|.|+.|+.
T Consensus 194 ~~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~~~~~v--~v~~~~g--~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~ 267 (435)
T PLN02268 194 GLMVRGYDPVINTLAKGL--DIRLNHRVTKIVRRYNGV--KVTVEDG--TTFVADAAIIAVPLGVLKANIIKFEPELPEW 267 (435)
T ss_pred eeecCCHHHHHHHHhccC--ceeCCCeeEEEEEcCCcE--EEEECCC--cEEEcCEEEEecCHHHHhcCcceecCCCCHH
Confidence 457889999999998855 799999999999988865 5666777 478999999999999876 47899999998
Q ss_pred hHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCCceeEEEecCCCCCCCCCCcceeEEee--cCCCcEEEEecC
Q 037878 260 TESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFF--ADTDIFLFWSYG 337 (2280)
Q Consensus 260 ~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g 337 (2280)
+...+....++...|. +-.|+...+ +. +..+++..+.. .+..+ ..... ........+..+
T Consensus 268 ~~~ai~~~~~g~~~Kv-~l~f~~~fw----------~~-~~~~g~~~~~~-----~~~~~-~~~~~~~~g~~~l~~~~~g 329 (435)
T PLN02268 268 KEEAISDLGVGIENKI-ALHFDSVFW----------PN-VEFLGVVAPTS-----YGCSY-FLNLHKATGHPVLVYMPAG 329 (435)
T ss_pred HHHHHHhCCccceeEE-EEEeCCCCC----------CC-CceeeccCCCC-----CCceE-EEecccCCCCCEEEEEecc
Confidence 8888877666655442 222221111 00 01111111100 00000 00000 111222222222
Q ss_pred CC----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCC--C----CcccchhhhcchhhHHHHHHhcCcCCceecc
Q 037878 338 NS----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFK--Y----FPHVNSKDMKDGFYDRLEYELQGQRNTYYVG 404 (2280)
Q Consensus 338 ~~----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~--~----~p~~s~~~~~~g~~~~l~~~lqg~~~~~~~G 404 (2280)
.. .+++++++++.+++.|+++.+ .|......+|.. | +..+.+.... .+++.+ .++..+++|+|
T Consensus 330 ~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~-~~~~~l---~~p~~~l~FAG 405 (435)
T PLN02268 330 RLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPH-DLYERL---RAPVDNLFFAG 405 (435)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCH-HHHHHH---hCCCCCeEEee
Confidence 21 457899999999999999853 255666666641 1 1112222221 123333 24556799999
Q ss_pred cccccc
Q 037878 405 GLMAFE 410 (2280)
Q Consensus 405 ~~~~~~ 410 (2280)
..++.+
T Consensus 406 e~ts~~ 411 (435)
T PLN02268 406 EATSSD 411 (435)
T ss_pred ccCCCc
Confidence 776553
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=192.32 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=67.4
Q ss_pred CeeCCCceeccCCcccC--------CcceEECCCcEeCCCcEEeecccCCCc-eEeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1574 AKIGRYCSIRAINPVSC--------PQQVTLGAGVHLGDFSRIIPGFYSSIG-FIFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~--------~~~~~iG~~~~i~~~~~i~~~~~~~~~-~~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
+.||++|+|+.++.+.. .+.+.|++.|+|+++|.|+.+....+. ...+.++||++|+||+++.|.++++||
T Consensus 196 vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig 275 (324)
T TIGR01853 196 VIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIG 275 (324)
T ss_pred EEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEEC
Confidence 45666666655543321 122223333333333333333332222 245789999999999999999999999
Q ss_pred CCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1645 RDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
++++||++|.|++| +|++++|.|+||
T Consensus 276 ~~~~ig~~s~V~~~--v~~~~~~~G~pa 301 (324)
T TIGR01853 276 DNVTIGAKSGVTKS--IPPPGVYGGIPA 301 (324)
T ss_pred CCCEEccCCEeCCc--CCCCcEEEccCc
Confidence 99999999999999 999999999995
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=195.11 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=49.7
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCC-CcEEecCCCc
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQR-GGIYIGSQSP 1673 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~-~~~~~G~Pa~ 1673 (2280)
..+.++||++|+||.++.|.++++||++++||++|.|+++ +|+ |..|.|+||.
T Consensus 258 i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~--i~~~~~~~~G~pa~ 311 (343)
T PRK00892 258 IAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKS--IPEPGEYSSGIPAQ 311 (343)
T ss_pred ecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCc--cCCCCeEEEeecCc
Confidence 4578999999999999999999999999999999999999 999 8999999963
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=198.63 Aligned_cols=210 Identities=16% Similarity=0.118 Sum_probs=126.8
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccc--ccccCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKN--GKFYRSP 255 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~--~i~f~p~ 255 (2280)
.+..+.+.||++.|+++|++.+ +|++|++|++|+++++++ .|++.++ +++||+||+|+|+++++ .|+|.|+
T Consensus 370 ~G~~~~v~GG~~~LieaLa~~L--~I~Ln~~Vt~I~~~~dgV--~V~~~~~---~~~AD~VIvTVPlgVLk~~~I~F~Pp 442 (881)
T PLN03000 370 GGDHCFLPGGNGRLVQALAENV--PILYEKTVQTIRYGSNGV--KVIAGNQ---VYEGDMVLCTVPLGVLKNGSIKFVPE 442 (881)
T ss_pred CCceEEeCCCHHHHHHHHHhhC--CcccCCcEEEEEECCCeE--EEEECCc---EEEeceEEEcCCHHHHhhCceeeCCC
Confidence 4557789999999999999998 499999999999988876 4555433 78999999999999988 7999999
Q ss_pred CChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCCceeEEEecCCCCCCCCCCcceeEEeec--CCCcEEE
Q 037878 256 TSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFA--DTDIFLF 333 (2280)
Q Consensus 256 ~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 333 (2280)
+|..+...+..+.++...|.++ .|....+ .. ....+++........ +....+..+.. ...+...
T Consensus 443 LP~~K~~AI~rL~~G~l~KViL-~Fd~~FW------~~----d~~~FG~l~~~~~~r---g~~~~f~s~sp~~G~pVLva 508 (881)
T PLN03000 443 LPQRKLDCIKRLGFGLLNKVAM-LFPYVFW------ST----DLDTFGHLTEDPNYR---GEFFLFYSYAPVAGGPLLIA 508 (881)
T ss_pred CCHHHHHHHHcCCCcceEEEEE-EeCCccc------cC----CCCceeEEecCCCCC---ceeEEEeCCCCCCCCcEEEE
Confidence 9999999999888887766433 2222111 00 011233322111100 00000000111 1112222
Q ss_pred EecCCC----CCCChHHHHHHHHHHHHhhcC-------ccceEEEeecC--CCC----cccchhhhcchhhHHHHHHhcC
Q 037878 334 WSYGNS----VDITGPTVTEVAIKTVENMGG-------VIENVVLQRRF--KYF----PHVNSKDMKDGFYDRLEYELQG 396 (2280)
Q Consensus 334 ~~~g~~----~~~s~~e~~~~i~~~L~~~~~-------~p~~~~~~~~~--~~~----p~~s~~~~~~g~~~~l~~~lqg 396 (2280)
+..|.. ..++++++++.+++.|+++-+ .|....+.+|. +|. ..+.+.... ..++.+ .+--+
T Consensus 509 fv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~-~~~d~L-aePv~ 586 (881)
T PLN03000 509 LVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASG-DDYDIL-AESVG 586 (881)
T ss_pred EecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCch-HHHHHH-hCcCC
Confidence 222332 458999999999999999743 25555555554 111 112222221 123333 11112
Q ss_pred cCCceecccccccc
Q 037878 397 QRNTYYVGGLMAFE 410 (2280)
Q Consensus 397 ~~~~~~~G~~~~~~ 410 (2280)
...+||+|..++.+
T Consensus 587 ~GRIfFAGEaTs~~ 600 (881)
T PLN03000 587 DGRLFFAGEATTRR 600 (881)
T ss_pred CCcEEEeehHHhCC
Confidence 45799999765543
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=199.00 Aligned_cols=90 Identities=19% Similarity=0.325 Sum_probs=75.2
Q ss_pred EEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCcc-EEEEEeCCCceEEEEeCEEEEcCCcccccc--cccCCCCC
Q 037878 181 IRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTV-GVDVKHSNGECEVMEFDKIIISGAFPVKNG--KFYRSPTS 257 (2280)
Q Consensus 181 ~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v-~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~--i~f~p~~~ 257 (2280)
...+.+|+..++..+++ |.+|++++.|.+|++.+++. .+++.+.++ +++|+||+|+|+++++. |.|.|+.+
T Consensus 211 ~~~~~~G~~~v~~~la~--~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~----~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 211 HLLMKGGYEPVVNSLAE--GLDIHLNKRVRKIKYGDDGAVKVTVETGDG----YEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred hhHhhCCccHHHhhcCC--CcceeeceeeEEEEEecCCceEEEEECCCe----eEeeEEEEEccHHHhccCceeeCCCCc
Confidence 35688999999999998 55899999999999877763 344444333 79999999999999877 99999999
Q ss_pred hhhHhhhccCCCChhhHhh
Q 037878 258 KPTESETQVMDMDELEKEL 276 (2280)
Q Consensus 258 ~~~~~~l~~~~l~~~~k~~ 276 (2280)
.++..+++..+.+...|-+
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~ 303 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVI 303 (501)
T ss_pred HHHHHHHHhcCCCceeEEE
Confidence 9999999998888776644
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=198.64 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccc--ccccCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKN--GKFYRSP 255 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~--~i~f~p~ 255 (2280)
.+..+.+.||++.|+++|++.++ |++|++|++|.+.+++| .+ +.+| ++++||+||+|+|+++++ .|.|.|+
T Consensus 426 ~G~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~~~dgV--~V-~~~G--~~~~AD~VIvTvPl~vLk~~~I~F~P~ 498 (808)
T PLN02328 426 GGDHCFIPGGNDTFVRELAKDLP--IFYERTVESIRYGVDGV--IV-YAGG--QEFHGDMVLCTVPLGVLKKGSIEFYPE 498 (808)
T ss_pred CCeEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEEcCCeE--EE-EeCC--eEEEcCEEEECCCHHHHhhcccccCCC
Confidence 35577899999999999999984 99999999999988876 34 3356 578999999999999987 6899999
Q ss_pred CChhhHhhhccCCCChhhHhh
Q 037878 256 TSKPTESETQVMDMDELEKEL 276 (2280)
Q Consensus 256 ~~~~~~~~l~~~~l~~~~k~~ 276 (2280)
+|+.+...+..+.++...|..
T Consensus 499 LP~~K~~AI~~l~yG~~~KV~ 519 (808)
T PLN02328 499 LPQRKKDAIQRLGYGLLNKVA 519 (808)
T ss_pred CCHHHHHHHHcCCCcceEEEE
Confidence 999999999888887766643
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=181.77 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=71.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|+..+.+ .+.++||++|.|+.++.+. +.++||++|+||+++.+.++++||++++||++|
T Consensus 102 ~~IG~~~~I~~~~~I--~~~~~Ig~~~~i~~~~~i~-----------~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s 168 (254)
T TIGR01852 102 TRIGNNNLLMAYSHI--AHDCVVGNHVILANNATLA-----------GHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLS 168 (254)
T ss_pred EEECCCCEECCCCEE--ccCCEECCCCEECCCCEEC-----------CCcEECCCcEEeccCEECCCcEECCCCEEeeee
Confidence 578888888766322 3556777777777776664 778999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCc
Q 037878 1654 VAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
+|+++ +|+++++.|+|+.
T Consensus 169 ~V~~~--i~~~~~~~G~pa~ 186 (254)
T TIGR01852 169 AVSKD--VPPYGLVEGNRAR 186 (254)
T ss_pred eEeee--cCCCcEEecCcCe
Confidence 99999 9999999999964
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=175.44 Aligned_cols=211 Identities=10% Similarity=0.049 Sum_probs=139.7
Q ss_pred CeEEEEcCCHHHHHHHHHhHCC---CceEeCcceEEEEEc-CCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCC
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLP---TEVHCNSEVLAIRRD-STTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRS 254 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg---~~I~l~t~V~~I~~~-~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p 254 (2280)
...+.++||++.+.+++.+.|+ +.|.++-++..+... .++|.+++++.++. .....+++..|.
T Consensus 239 ~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~-~~~~~~~~~~t~------------ 305 (491)
T KOG1276|consen 239 WTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGT-QRVVVSYDAATL------------ 305 (491)
T ss_pred cchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCc-eeeecccccccc------------
Confidence 4456789999999999999985 457888888888654 45688899888884 345666666663
Q ss_pred CCChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC--cccCCceeEEEec--CCCCCCCCCCcceeEEee--cCC
Q 037878 255 PTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG--LEHLPVGFYYFGE--YMDDPATIGHPVAMQKFF--ADT 328 (2280)
Q Consensus 255 ~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~--l~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~ 328 (2280)
++.+...+.+- ..+...+.+..+.|.+.+.+....++ ....-.+|+++.| ..++...+|..+...-|. .++
T Consensus 306 --~~~k~a~ll~~-~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s 382 (491)
T KOG1276|consen 306 --PAVKLAKLLRG-LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPS 382 (491)
T ss_pred --chHHhhhhccc-cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCC
Confidence 34444444322 22233456677777777777766554 2222379999999 555666777666544444 233
Q ss_pred CcEEEEecCCC------CCCChHHHHHHHHHHHHhhcCc---cceEEEeecCCCCcccchhhhcchhhHHHHHHhcCcC-
Q 037878 329 DIFLFWSYGNS------VDITGPTVTEVAIKTVENMGGV---IENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQR- 398 (2280)
Q Consensus 329 ~~~~~~~~g~~------~~~s~~e~~~~i~~~L~~~~~~---p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~- 398 (2280)
+..++..+|.- ...+.||+++.+.++|++|.+. |......-|...+|+|+..+.+. .+.....++..+
T Consensus 383 ~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~--le~a~~~l~~~~g 460 (491)
T KOG1276|consen 383 PKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDV--LEAAKSMLTDSPG 460 (491)
T ss_pred ceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHH--HHHHHHHHHhCCC
Confidence 34444444322 3368899999999999998544 66666666677889887776652 444444455555
Q ss_pred -Cceeccccc
Q 037878 399 -NTYYVGGLM 407 (2280)
Q Consensus 399 -~~~~~G~~~ 407 (2280)
..+++|+++
T Consensus 461 ~~l~l~G~~y 470 (491)
T KOG1276|consen 461 LGLFLGGNHY 470 (491)
T ss_pred CceEeecccc
Confidence 788888874
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=182.07 Aligned_cols=84 Identities=24% Similarity=0.314 Sum_probs=69.3
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|.|+.++.+ .+.+.||++|.|+.++.+. +.++||++|+||+++.|.++++||++++||++|
T Consensus 103 ~~IG~~~~I~~~~~I--~~~~~IG~~~~i~~~~~i~-----------~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s 169 (254)
T cd03351 103 TRIGNNNLLMAYVHV--AHDCVIGNNVILANNATLA-----------GHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGS 169 (254)
T ss_pred eEECCCCEECCCCEE--CCCCEECCCcEECCCcccc-----------CCcEeCCCcEECCcceECCCcEECCCCEECcCC
Confidence 578888888776322 2445666666666655553 678999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCC
Q 037878 1654 VAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa 1672 (2280)
+|.++ +++++++.|+|+
T Consensus 170 ~V~~~--i~~~~~~~G~~~ 186 (254)
T cd03351 170 GVVQD--VPPYVIAAGNRA 186 (254)
T ss_pred EEeee--cCCCeEEEccCC
Confidence 99999 999999999996
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=198.41 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHhHC---------CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccc--cccC
Q 037878 185 KGGYTSLWQKLSKYL---------PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNG--KFYR 253 (2280)
Q Consensus 185 ~gG~~~l~~~la~~l---------g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~--i~f~ 253 (2280)
++|+++|+++|++.+ +.+|++|++|++|+.+++++ .|++.+| ++++||+||+|+|+++++. +.|.
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV--~V~~~~G--~~~~a~~VIvtvPl~vLk~~~I~F~ 295 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGV--TVKTEDG--SVYRAKYVIVSVSLGVLQSDLIKFK 295 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcE--EEEECCC--CEEEeCEEEEccChHHhccCceEEe
Confidence 689999999999876 25799999999999988865 7778888 5799999999999999886 9999
Q ss_pred CCCChhhHhhhccCCCChhhHhh
Q 037878 254 SPTSKPTESETQVMDMDELEKEL 276 (2280)
Q Consensus 254 p~~~~~~~~~l~~~~l~~~~k~~ 276 (2280)
|++|+.+...+..+.++...|.+
T Consensus 296 P~LP~~k~~ai~~l~~g~~~Kv~ 318 (487)
T PLN02676 296 PPLPDWKIEAIYQFDMAVYTKIF 318 (487)
T ss_pred CCCCHHHHHHHHhCCceeeEEEE
Confidence 99999999888888887766643
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=197.48 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=79.9
Q ss_pred CeEEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccc------cc
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNG------KF 251 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~------i~ 251 (2280)
+..+.++||++.|+++|++.+. .+|++|++|++|+++++++ .|++.+| ++++||+||+|+|+++++. +.
T Consensus 232 g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v--~V~~~dG--~~~~aD~VIvTvPl~vL~~~~~~~~i~ 307 (539)
T PLN02568 232 GEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPV--KLHFADG--STMTADHVIVTVSLGVLKAGIGEDSGL 307 (539)
T ss_pred CCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeE--EEEEcCC--CEEEcCEEEEcCCHHHHhhccccccce
Confidence 4467899999999999999994 5799999999999988865 5666778 4689999999999999774 68
Q ss_pred cCCCCChhhHhhhccCCCChhhHh
Q 037878 252 YRSPTSKPTESETQVMDMDELEKE 275 (2280)
Q Consensus 252 f~p~~~~~~~~~l~~~~l~~~~k~ 275 (2280)
|.|++|..+...+..+.++...|-
T Consensus 308 F~P~LP~~k~~Ai~~l~~g~~~Ki 331 (539)
T PLN02568 308 FSPPLPDFKTDAISRLGFGVVNKL 331 (539)
T ss_pred ecCCCCHHHHHHHHhcCCceeeEE
Confidence 999999999999988888877664
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=179.71 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=76.2
Q ss_pred CeeCCCceeccCCc---ccCCcceEECCCcEeCCCcEEeecccCC--CceEeeCeEECCCcEEccCCeeCCCcEeCCCcE
Q 037878 1574 AKIGRYCSIRAINP---VSCPQQVTLGAGVHLGDFSRIIPGFYSS--IGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVI 1648 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~---~~~~~~~~iG~~~~i~~~~~i~~~~~~~--~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~ 1648 (2280)
++||++||+-.... .-.+||++||| +.||.+|.|++..++. ++....++.||+++|||+++.+-..++||||+.
T Consensus 345 ~hIGNFVEvK~a~ig~gsKa~HLtYlGD-A~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~ 423 (460)
T COG1207 345 VHIGNFVEVKKATIGKGSKAGHLTYLGD-AEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGAT 423 (460)
T ss_pred CeEeeeEEEecccccCCccccceeeecc-ceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcE
Confidence 56777666643221 12367788887 7777777777666543 344557889999999999999999999999999
Q ss_pred EccCccccCCCccCCCcEEecCC
Q 037878 1649 LGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1649 vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
||+||+|++| ||+++..++.+
T Consensus 424 iaAGStIT~D--Vp~~aLai~Ra 444 (460)
T COG1207 424 IAAGSTITKD--VPEGALAISRA 444 (460)
T ss_pred EcccceEccc--CCCCceeEeec
Confidence 9999999999 99999999998
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-15 Score=171.22 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=49.2
Q ss_pred eCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
++++||++|+||.++++.++++||++++|+++|+|.++ +|++++|.|+||.
T Consensus 149 ~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~G~pa~ 199 (205)
T cd03352 149 GSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVSGTPAQ 199 (205)
T ss_pred cccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeE--CCCCCEEEeecCc
Confidence 78999999999999999999999999999999999998 9999999999964
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=160.45 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=76.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
.+||+|+.+..+ .+.-|.|.||++|.++.+++|+ |++.|||++.||.-+-|.+-++||++|+||.+|
T Consensus 107 T~IGdnnl~May--~HVAHDC~iGn~~ilaNnatLA-----------GHV~igD~aiiGG~saVHQFvrIG~~amiGg~S 173 (260)
T COG1043 107 TRIGDNNLIMAY--AHVAHDCVIGNNCILANNATLA-----------GHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLS 173 (260)
T ss_pred EEECCCCEEEEe--eeeeccceecCcEEEecCCeEe-----------ccEEECCEEEEcCcceEEEEEEEcchheecccc
Confidence 479999999887 5567778888888888888886 888999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCC
Q 037878 1654 VAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa 1672 (2280)
.|.+| |||.++..|||+
T Consensus 174 ~v~~D--VpPy~~~~Gn~a 190 (260)
T COG1043 174 AVSQD--VPPYVIASGNHA 190 (260)
T ss_pred ccccC--CCCeEEecCCcc
Confidence 99999 999999999998
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=188.12 Aligned_cols=93 Identities=24% Similarity=0.308 Sum_probs=79.3
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEc----------CCccEEEEEeCCCceEEEEeCEEEEcCCcccc
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRD----------STTVGVDVKHSNGECEVMEFDKIIISGAFPVK 247 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~----------~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~ 247 (2280)
.+..+.+.||++.|+++|++.+ .|++|++|++|.++ +++ |.|.+.+| ++++||+||+|+|++++
T Consensus 925 gG~~~rIkGGYqqLIeALAe~L--~IrLNtpVtrId~s~~d~~~~~s~~dG--VtVtTsDG--etftADaVIVTVPLGVL 998 (1713)
T PLN02976 925 GGAHCMIKGGYSNVVESLAEGL--DIHLNHVVTDVSYGSKDAGASGSSRKK--VKVSTSNG--SEFLGDAVLITVPLGCL 998 (1713)
T ss_pred CCceEEeCCCHHHHHHHHHhhC--CeecCCeEEEEEecCCcccccccCCCc--EEEEECCC--CEEEeceEEEeCCHHHh
Confidence 3456779999999999999988 59999999999984 233 57778888 57999999999999997
Q ss_pred c--ccccCCCCChhhHhhhccCCCChhhHhh
Q 037878 248 N--GKFYRSPTSKPTESETQVMDMDELEKEL 276 (2280)
Q Consensus 248 ~--~i~f~p~~~~~~~~~l~~~~l~~~~k~~ 276 (2280)
+ .+.|.|++|..+...+..+.++...|.+
T Consensus 999 Kag~I~FsPPLPe~KqaAIqrLgfG~lnKV~ 1029 (1713)
T PLN02976 999 KAETIKFSPPLPDWKYSSIQRLGFGVLNKVV 1029 (1713)
T ss_pred hhcccccCCcccHHHHHHHHhhccccceEEE
Confidence 6 6899999999999999888888777643
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=179.79 Aligned_cols=351 Identities=17% Similarity=0.152 Sum_probs=168.6
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeecccceEEecCCCCceeecccc-----
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVA----- 97 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 97 (2280)
+|+|||||+|||+||++|+++|+ +|+|+|+++++||++++.+.+++-++.+...... -.......+.++++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~--~~~~~~~l~~~lg~~~~~~~ 77 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK--SDEALLELLDELGLEDKLRW 77 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc--ccHHHHHHHHHcCCCCceee
Confidence 69999999999999999999998 6999999999999999988765443321110000 000000000000000
Q ss_pred -------------cch---hhhhccccccchhhhhcc----ccch-hhHHHhhhhhhhHHHHHcCCCCcchhhhhhhhcc
Q 037878 98 -------------DDY---VSVISLTLELQDKAKESG----RIGV-HAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTAS 156 (2280)
Q Consensus 98 -------------~~~---~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 156 (2280)
..+ ...+.+............ .... .....+......+|+.+......-......+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~ 157 (434)
T PRK07233 78 RETKTGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLES 157 (434)
T ss_pred ccCceEEEECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 000 000000000000000000 0000 0000111222345554432111111111111111
Q ss_pred -cccccccccHHHHHHHHhhcc-------CCeEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEEe
Q 037878 157 -GYGFVQDMPYAYIHEFTRTSM-------AGKIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKH 225 (2280)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t 225 (2280)
......+++...+...+.... ...++.++||++.++++|++.+ |++|++|++|++|+.+++++ .+..
T Consensus 158 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~--~~~~ 235 (434)
T PRK07233 158 KFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGV--TGVE 235 (434)
T ss_pred ccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCce--EEEE
Confidence 123345555555443332111 2346778999999999998766 78999999999999887765 2223
Q ss_pred CCCceEEEEeCEEEEcCCcccccccccCCCCChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCCceeEEE
Q 037878 226 SNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYF 305 (2280)
Q Consensus 226 ~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~ 305 (2280)
.+| ++++||+||+|+|+.....+. |+.++ ..+..+.++.+...+...+....- ....+...
T Consensus 236 ~~~--~~~~ad~vI~a~p~~~~~~ll--~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 296 (434)
T PRK07233 236 VDG--EEEDFDAVISTAPPPILARLV--PDLPA-------------DVLARLRRIDYQGVVCMVLKLRRP--LTDYYWLN 296 (434)
T ss_pred eCC--ceEECCEEEECCCHHHHHhhc--CCCcH-------------HHHhhhcccCccceEEEEEEecCC--CCCCceee
Confidence 455 478999999997766433221 22211 112223333343333333333221 01111111
Q ss_pred ecCCCCCCCCCCcceeEEee---cCCCcEE--EEecCCC----CCCChHHHHHHHHHHHHhhcCc-----cceEEEeecC
Q 037878 306 GEYMDDPATIGHPVAMQKFF---ADTDIFL--FWSYGNS----VDITGPTVTEVAIKTVENMGGV-----IENVVLQRRF 371 (2280)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~g~~----~~~s~~e~~~~i~~~L~~~~~~-----p~~~~~~~~~ 371 (2280)
.... .....+. .....+. .+++... +..|... ..++++++.+.++++|+++.+. +....+.++.
T Consensus 297 ~~~~-~~~~~~~-~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~ 374 (434)
T PRK07233 297 INDP-GAPFGGV-IEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAP 374 (434)
T ss_pred ecCC-CCCcceE-EEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEec
Confidence 1111 0001100 0000010 0012111 1112111 2367889999999999998642 3445666666
Q ss_pred CCCcccchhhhcchhhHHHHHH-hcCcCCceeccc
Q 037878 372 KYFPHVNSKDMKDGFYDRLEYE-LQGQRNTYYVGG 405 (2280)
Q Consensus 372 ~~~p~~s~~~~~~g~~~~l~~~-lqg~~~~~~~G~ 405 (2280)
...|.+++...+ .. .. .++..++|++|.
T Consensus 375 ~a~~~~~~g~~~-----~~-~~~~~~~~~l~~aG~ 403 (434)
T PRK07233 375 YAQPIYEPGYLD-----KI-PPYDTPIEGLYLAGM 403 (434)
T ss_pred cccccccCchhh-----cC-CCcccCcCCEEEeCC
Confidence 777776554221 11 12 244578999986
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-14 Score=161.65 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=71.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.+.....+ ..+.||++|.|+.++.+.+.. .....++.|||+++||.++.+.+|++||++++|+++|
T Consensus 103 s~ig~~~~i~~~~~i---~~~~Ig~~~~ig~~~~~~~~~----~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs 175 (193)
T cd03353 103 STIGEGSKANHLSYL---GDAEIGEGVNIGAGTITCNYD----GVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGS 175 (193)
T ss_pred ceEcCCCEeccccee---cccEECCCCEEcCceEEeccC----CccccCCEECCCeEEccCCEEeCCcEECCCcEECCCC
Confidence 456777766654322 237889999999888774321 2233578999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCC
Q 037878 1654 VAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~P 1671 (2280)
+|+++ +|+++++.|.|
T Consensus 176 ~V~~~--v~~~~~v~~~~ 191 (193)
T cd03353 176 TITKD--VPPGALAIARA 191 (193)
T ss_pred EEccc--cCCCCEEEecc
Confidence 99999 99999999998
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=162.76 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=105.3
Q ss_pred chhHHHH-HHHHHHHHHh-hhcCCcchHHHHHHHhcCeee------------------ccCcEEEccceeeecCceeEEe
Q 037878 2151 MDTVWQA-FRTLVGEYFV-EMTSGSFLFVAWMKLMGAEIE------------------LGQGAYVDSMGAVLNPEMVEME 2210 (2280)
Q Consensus 2151 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~r~~g~~ig------------------~~~~~~~~~~~~~~~~~~v~~g 2210 (2280)
+..+.+. |..+....|. .....+.++.++||+||++|| +|++++|+.++++.+.+.|+||
T Consensus 16 ~~~~~~~~w~~~~~~~~~~~~~~~~~~r~~~lr~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG 95 (182)
T PRK10502 16 ASAWKVQLWWAVQATLFAWSPQPLYRWRAFLLRLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIG 95 (182)
T ss_pred hHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEEC
Confidence 4455556 6777665453 234458899999999999999 4777788888888888999999
Q ss_pred cCceEECCCceEee--ecccCCCcceEeeeEEEccCeEEccceeEcCCcEeCCCceecccceeecc
Q 037878 2211 GNGGCVGKEALLFG--HIYEGDGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2211 ~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
++|+|+++|.|++ |.+.++++.+...+++||++||||++|+|+||++||++++|+++|+|+|.
T Consensus 96 -~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~ 160 (182)
T PRK10502 96 -AHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS 160 (182)
T ss_pred -CCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc
Confidence 9999999999998 88776777888899999999999999999999999999999999999984
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=155.32 Aligned_cols=115 Identities=15% Similarity=0.278 Sum_probs=93.6
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||++|.|.... ...+.||++++|++++.+ ..++||++|+||.+++|++|++||++++||++|
T Consensus 56 ~~Ig~~~~I~~~~----~~~siIg~~~~Ig~~a~i------------~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags 119 (196)
T PRK13627 56 ANLQDGCIMHGYC----DTDTIVGENGHIGHGAIL------------HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMS 119 (196)
T ss_pred CEECCCCEEeCCC----CCCCEECCCCEECCCcEE------------eeEEECCCCEECcCCccCCCcEECCCCEEcCCC
Confidence 5667777765432 125789999999999887 567899999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCceeeecccchhhHHHHHhHHHHHHHHHhhhhhh
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSANL 1705 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~ 1705 (2280)
+|+++.++|++++|.|+|| +.+|....+..+.+.....+|.++.+++...+
T Consensus 120 ~V~~~~~ip~~~~~~G~Pa-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 170 (196)
T PRK13627 120 FVKAGFQGEKRQLLMGTPA-RAVRSVSDDELHWKRLNTKEYQDLVGRCHASL 170 (196)
T ss_pred EEeCCcCcCCCcEEEecCC-EEeccCCHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 9999977799999999994 55666666555556667788999888886544
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.8e-14 Score=182.52 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=76.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.|+..+.+. .++||++|+||.++.+.+.. .....+++||++|+||.++.|.+|++||+|++||++|
T Consensus 349 ~~ig~~~~i~~~~~i~---~~~Ig~~~~ig~~~~~~~~~----~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~ 421 (451)
T TIGR01173 349 ARIGKGSKAGHLSYLG---DAEIGSNVNIGAGTITCNYD----GANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGS 421 (451)
T ss_pred cEECCCcEecceeeEe---eeEEcCCcEECCCeEEeCcc----cccCCCCEECCCcEECCCCEEECCcEECCCCEEccCC
Confidence 5677777777654332 38889999999888885422 2222468999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCceeeec
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVMIKN 1678 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~~~~ 1678 (2280)
+|+++ ||+++++.|.|+.+..++
T Consensus 422 ~v~~~--v~~~~~~~~~~~~~~~~~ 444 (451)
T TIGR01173 422 TVTKD--VPEGALAISRARQRNIEG 444 (451)
T ss_pred EECcc--CCCCcEEEccCceeeccc
Confidence 99999 999999999996554443
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-14 Score=156.71 Aligned_cols=116 Identities=22% Similarity=0.272 Sum_probs=88.6
Q ss_pred CCchHHHHHHHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEe--------------------e--cccCCC--
Q 037878 1561 GTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRII--------------------P--GFYSSI-- 1616 (2280)
Q Consensus 1561 gt~~~~~~lR~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~--------------------~--~~~~~~-- 1616 (2280)
...+...+||++|++||+++.|.....+..|..++|||+|.|++++.|. + |.+...
T Consensus 39 ~~~~r~~~lr~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~ 118 (182)
T PRK10502 39 LYRWRAFLLRLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHF 118 (182)
T ss_pred hHHHHHHHHHHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCc
Confidence 3356688999999999999999876655555566666665555555442 1 111111
Q ss_pred ceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeec
Q 037878 1617 GFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKN 1678 (2280)
Q Consensus 1617 ~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~ 1678 (2280)
....++++|||+|+||.+++|++|++||+|++||++|+|+++ +|+++++.|+||..+..|
T Consensus 119 ~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~Pa~~ik~r 178 (182)
T PRK10502 119 DLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGNPAVPIRPR 178 (182)
T ss_pred ccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECCcceEeccc
Confidence 123477999999999999999999999999999999999999 999999999996544333
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-13 Score=155.22 Aligned_cols=119 Identities=17% Similarity=0.329 Sum_probs=96.1
Q ss_pred CeeCCCceeccCCc--ccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEcc
Q 037878 1574 AKIGRYCSIRAINP--VSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGA 1651 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~--~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~ 1651 (2280)
+.||++|.|..... ...++.+.||++|+|+++|.| ..++||++|+||.+++|++|+.||++++||+
T Consensus 105 t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L------------~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~ 172 (246)
T PLN02472 105 SNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL------------RSCTIEPECIIGQHSILMEGSLVETHSILEA 172 (246)
T ss_pred CEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE------------CCeEEcCCCEECCCCEECCCCEECCCCEECC
Confidence 45555555543210 022456899999999999988 5679999999999999999999999999999
Q ss_pred CccccCCCccCCCcEEecCCCceeeecccchhhHHHHHhHHHHHHHHHhhhhhh
Q 037878 1652 LSVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSANL 1705 (2280)
Q Consensus 1652 ~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~ 1705 (2280)
+|+|+.+..+|+|++|.|+|| +.++....+....+......|+++.+++..++
T Consensus 173 gsvV~~g~~Ip~g~~~~G~PA-~~~~~~~~~~~~~l~~~a~~y~~l~k~~~~~~ 225 (246)
T PLN02472 173 GSVLPPGRRIPTGELWAGNPA-RFVRTLTNEETLEIPKLAVAINDLSQSHFSEF 225 (246)
T ss_pred CCEECCCCEeCCCCEEEecCC-EEeccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998888999999999995 55566666666777788889999999887766
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=157.63 Aligned_cols=100 Identities=15% Similarity=0.287 Sum_probs=85.9
Q ss_pred ceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1593 ~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
.+.||++|+|+++|.| ..++||++|+||.+++|++|++||++++||++|+|+++..+|++++|.|+|
T Consensus 119 ~siIG~~v~IG~~avI------------~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~P- 185 (269)
T PLN02296 119 PTIIGDNVTIGHSAVL------------HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNP- 185 (269)
T ss_pred CcEeCCCCEECCCcee------------cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccC-
Confidence 3788888888888877 457999999999999999999999999999999999998899999999999
Q ss_pred ceeeecccchhhHHHHHhHHHHHHHHHhhhhhh
Q 037878 1673 PVMIKNTMHALDDRIEEMDMKYKKIVGNLSANL 1705 (2280)
Q Consensus 1673 ~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~ 1705 (2280)
++.+|.........+.....+|.++.+++..+.
T Consensus 186 A~~ir~~~~~~~~~~~~~a~~y~~l~~~~~~~~ 218 (269)
T PLN02296 186 AKFLRKLTEEEIAFISQSATNYSNLAQVHAAEN 218 (269)
T ss_pred cEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677766666667777888888888876654
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=177.40 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=72.8
Q ss_pred eeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCcc
Q 037878 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~ 1654 (2280)
.||+++.|+....+ ..+.||++|+||.++.+... .+....+++||++|+||.+++|.+|++||++++||++|+
T Consensus 350 ~i~~~~~i~~~~~~---~~~~i~~~~~iG~~~~~~~~----~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~ 422 (450)
T PRK14360 350 QLGEGSKVNHLSYI---GDATLGEQVNIGAGTITANY----DGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGST 422 (450)
T ss_pred ccCCCcEeccceec---CCceecCCcEECccceeccc----cccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCE
Confidence 35566666543222 23788999999998887532 133345789999999999999999999999999999999
Q ss_pred ccCCCccCCCcEEecCCCcee
Q 037878 1655 APMHSVLQRGGIYIGSQSPVM 1675 (2280)
Q Consensus 1655 v~~~~~v~~~~~~~G~Pa~~~ 1675 (2280)
|+++ +|+++++.|+|+...
T Consensus 423 v~~~--~~~~~~~~g~~~~~~ 441 (450)
T PRK14360 423 ITKD--VPDNSLAIARSRQVI 441 (450)
T ss_pred ECcc--CCCCCEEEeccceee
Confidence 9999 999999999995433
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.8e-13 Score=172.80 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=69.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
..||+++.+...+.+ ..+.||++|.||.++.+.+. .......+.||++|+||+++.|.+|++||++++|+++|
T Consensus 356 ~~ig~~~~~~~~~~i---g~~~ig~~~~ig~~~~~~~~----~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s 428 (459)
T PRK14355 356 IVMGEGSKASHLTYL---GDATIGRNVNIGCGTITCNY----DGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGT 428 (459)
T ss_pred CEECCCceeeeeccc---cCCEECCCCEEccceeecCc----CCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCC
Confidence 346666666543222 23677777888777666321 12233568999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCC
Q 037878 1654 VAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa 1672 (2280)
+|.++ +|+++++.|++.
T Consensus 429 ~v~~~--v~~~~~~~~~~~ 445 (459)
T PRK14355 429 TVTKD--VPPDSLAIARSP 445 (459)
T ss_pred EEccc--CCCCcEEEeccc
Confidence 99999 999999999883
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=173.63 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=72.3
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.+++.+.+ ..++||++|+||.++.+.+.. .....+++|||+|+||.+++|.+|++||++++||++|
T Consensus 353 ~~i~~~~~~~~~~~~---g~~~ig~~~~ig~~~~~~~~~----~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs 425 (456)
T PRK09451 353 ARLGKGSKAGHLTYL---GDAEIGDNVNIGAGTITCNYD----GANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGT 425 (456)
T ss_pred eeeCCCCccCccccc---cccEECCCCEEcCCeEEeccc----CcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCC
Confidence 567777777664322 348999999999999885432 1112358999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEec-CCC
Q 037878 1654 VAPMHSVLQRGGIYIG-SQS 1672 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G-~Pa 1672 (2280)
+|++| +|+++.+.| .|+
T Consensus 426 ~v~~~--v~~~~~~~~~~~~ 443 (456)
T PRK09451 426 TVTRD--VAENELVISRVPQ 443 (456)
T ss_pred EEccc--cCCCCEEEeccCc
Confidence 99999 999999965 664
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-13 Score=165.05 Aligned_cols=115 Identities=13% Similarity=0.043 Sum_probs=89.0
Q ss_pred CCceeecCcEEEE-E-CCeEEEEecCCCeEEECC---eeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccC
Q 037878 889 GRKYTRTGDLGRI-I-DGKFFITGRIKDLIIVAG---RNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSD 963 (2280)
Q Consensus 889 ~~~~yrTGDlgr~-~-dG~l~~~GR~dd~IKi~G---~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~ 963 (2280)
.+|||+|||+|++ | ||+++|+||.| +| ++|+|. ||++|.+||+|.+ |+|++++++..++
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~e---aaVvgvpd~~~ge------- 270 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSD---VAIALFSLPAKGV------- 270 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccE---EEEEEEEcCCCCe-------
Confidence 4699999999998 5 99999999998 88 799999 9999999999976 9999998875542
Q ss_pred CCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHh
Q 037878 964 GSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030 (2280)
Q Consensus 964 ~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~ 1030 (2280)
.+.++++. .. ....+++.++++++|+. ++|.. +..+++||+|+||||+|++|++..
T Consensus 271 ---~v~A~Vv~--~~-~~~~~el~~~l~~~L~~--kvP~~---v~~v~~lP~t~~GKi~R~~Lr~~~ 326 (365)
T PRK09188 271 ---GLYAFVEA--EL-PADEKSLRARLAGAKPP--KPPEH---IQPVAALPRDADGTVRDDILRLIA 326 (365)
T ss_pred ---EEEEEEEE--CC-CCCHHHHHHHHHhhchh--cCCcE---EEEECCCCCCCCCCccHHHHHHHh
Confidence 23333322 21 22335778888888775 55543 334489999999999999987764
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=171.98 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=70.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.|.....+ ..+.||++|+||.++.+.+... ...+.+.||++|+||.+++|.+|++||++++||++|
T Consensus 358 ~~I~~~~~i~~~~~i---~~~~Ig~~~~IG~~~~i~~~~~----~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags 430 (482)
T PRK14352 358 ATIGRGTKVPHLTYV---GDADIGEHSNIGASSVFVNYDG----VNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGT 430 (482)
T ss_pred cEECCCcEEccCcee---cccEECCCcEECCCcEEecccc----ccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCC
Confidence 446666666543322 2378999999999988754321 123568999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEe-cCCC
Q 037878 1654 VAPMHSVLQRGGIYI-GSQS 1672 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~-G~Pa 1672 (2280)
+|+++ +|+++++. |+|+
T Consensus 431 ~v~~~--v~~~~~~~~~~p~ 448 (482)
T PRK14352 431 VIRED--VPPGALAVSEGPQ 448 (482)
T ss_pred EEcCC--CCCCcEEEecccc
Confidence 99999 99999865 8995
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-13 Score=150.12 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=88.3
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeeccc-------CCCceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFY-------SSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~-------~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
.++||+++.|+.++.+.+.+.++|||+|+|+++|.|.++.+ ..+....++++||++||||.+++|.+|++||+
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~ 154 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECC
Confidence 57899999999877676677899999999999999975432 12233557899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
+++||++|+|+++ +|++++|.|+||. .+|+.
T Consensus 155 ~~vIgagsvV~kd--vp~~~v~~G~PAk-~i~~~ 185 (203)
T PRK09527 155 NSVIGAGSVVTKD--IPPNVVAAGVPCR-VIREI 185 (203)
T ss_pred CCEECCCCEEccc--CCCCcEEEeeCCE-EeccC
Confidence 9999999999999 9999999999954 44544
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=171.37 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=61.0
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
+.||++|.||.++.+.+.. +....+++|||+++||.++.|.+|++||++++||++|+|+++ +|+++.+.|+|..
T Consensus 359 ~~Ig~~~~ig~~~~~~~~~----~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~--v~~~~~~~g~~~~ 432 (448)
T PRK14357 359 ATVGKNVNIGAGTITCNYD----GKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITED--VPPYSLALGRARQ 432 (448)
T ss_pred cEECCCcEECCCccccccc----ccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCc--CCCCcEEEccccE
Confidence 6677777777776552211 112356899999999999999999999999999999999999 9999999999943
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=145.37 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=91.6
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|.|.... -+.+.||++++|++++.| ..++||++|+||.++.+.+|++||++++||++|
T Consensus 54 t~Ig~~~~I~~~~----~~~siIg~~~~Ig~~a~I------------~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags 117 (192)
T TIGR02287 54 ANIQDNCVMHGFP----GQDTVVEENGHVGHGAIL------------HGCIVGRNALVGMNAVVMDGAVIGENSIVAASA 117 (192)
T ss_pred CEECCCeEEeccC----CCCCeECCCCEECCCCEE------------cCCEECCCCEECCCcccCCCeEECCCCEEcCCC
Confidence 4566666653211 134789999999999887 678999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCceeeecccchhhHHHHHhHHHHHHHHHhhhhhh
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSANL 1705 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~ 1705 (2280)
+|+++..+|++++|.|+| ++.+|....+....+.+...+|.++.+++....
T Consensus 118 ~V~~~~~ip~~~l~~G~P-ak~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 168 (192)
T TIGR02287 118 FVKAGAEMPAQYLVVGSP-AKVIRELSEQELAWKKQGTHEYQVLATRCKQTL 168 (192)
T ss_pred EECCCCEECCCeEEEccC-CEEeccCCHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 999988899999999999 455555555445555567788888888886554
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-13 Score=142.24 Aligned_cols=110 Identities=22% Similarity=0.195 Sum_probs=90.8
Q ss_pred hhhhccCCchHHHHHHHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccC
Q 037878 1555 FAKLLSGTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQ 1634 (2280)
Q Consensus 1555 ~~~~l~gt~~~~~~lR~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~ 1634 (2280)
+.+.++|.+.-| ||+||++.+|.+..-+.+-+-..|||||.|-++++|++..-.++ ..+.+||+++.||++
T Consensus 61 ~~~~~~gieIhp------~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g---~RhPtIg~~V~IGag 131 (194)
T COG1045 61 LSRFLFGIEIHP------GAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESG---KRHPTIGNGVYIGAG 131 (194)
T ss_pred HHHhhcceeeCC------CCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCC---CCCCccCCCeEECCC
Confidence 445566666666 88999999998776566677788888888888888865444444 367899999999999
Q ss_pred CeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCcee
Q 037878 1635 SLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVM 1675 (2280)
Q Consensus 1635 ~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~ 1675 (2280)
+.|+.+.+||||+.|||+|+|.+| +|++++++|.||..+
T Consensus 132 AkILG~I~IGd~akIGA~sVVlkd--VP~~~tvvGvPArii 170 (194)
T COG1045 132 AKILGNIEIGDNAKIGAGSVVLKD--VPPNATVVGVPARVI 170 (194)
T ss_pred CEEEcceEECCCCEECCCceEccC--CCCCceEecCcceEe
Confidence 999999999999999999999999 999999999995444
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=162.98 Aligned_cols=42 Identities=36% Similarity=0.512 Sum_probs=39.9
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEe
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE 65 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~ 65 (2280)
+|+|||||++||+||++|+++|+ +|+|+|+++++||+++|.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~ 42 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDVLGGKVAAWK 42 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCcceeE
Confidence 59999999999999999999998 6999999999999999974
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=168.79 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=62.1
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
+.||++|.|+.++.+.+.. ......++||++|+||++++|.+|++||++++||++|+|.++ +|+++.+.|.|.
T Consensus 356 ~~ig~~~~Ig~~~~~~~~~----~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~--v~~~~~~~g~~~ 428 (446)
T PRK14353 356 ATIGAGANIGAGTITCNYD----GFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED--VPDDALALGRAR 428 (446)
T ss_pred cEEcCCcEECCceeeeccc----cccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc--CCCCCEEEecCc
Confidence 5788888888887663221 112246899999999999999999999999999999999999 999999999994
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=167.06 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=69.5
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.|++++.+++...+ ..++||++|+||.++.+.+... .....++||++|+||+++++.++++||++++||++|
T Consensus 358 ~~i~~~~~ig~~~~~---~~~~ig~~~~ig~~~~i~~~~~----~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs 430 (481)
T PRK14358 358 ARLDAGVKAGHLAYL---GDVTIGAETNVGAGTIVANFDG----VNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGS 430 (481)
T ss_pred ceecCCcccCceEEE---CCeEEcCCceEcCCEEEeCCCC----ccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCC
Confidence 345555555543222 3389999999999998865321 223567999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecC
Q 037878 1654 VAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~ 1670 (2280)
+|+++ +|+++.+.+.
T Consensus 431 ~v~~~--v~~~~~~~~~ 445 (481)
T PRK14358 431 AVHDD--VPEGAMAVAR 445 (481)
T ss_pred EEecc--cCCCCEEEec
Confidence 99999 9999999864
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=169.05 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=72.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.+++...+ ..+.||++|+|+.++.+.++. .....+++|||++++|.++.|.+|++||++++||++|
T Consensus 352 ~~i~~~~~i~~~~~~---~~~~ig~~~~ig~~~~~~~~~----~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~ 424 (458)
T PRK14354 352 STIGEGTKVSHLTYI---GDAEVGENVNIGCGTITVNYD----GKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGS 424 (458)
T ss_pred eEECCCCEecceeee---cCcccCCceEEcCceeecccc----cccccCCEECCCcEEccCCEEeCCcEECCCCEECCCC
Confidence 456666666654333 237888888888888775432 2223468999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCC
Q 037878 1654 VAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa 1672 (2280)
+|.++ +|+++++.|+|.
T Consensus 425 ~v~~~--~~~~~~~~~~~~ 441 (458)
T PRK14354 425 TITKD--VPEDALAIARAR 441 (458)
T ss_pred EECCC--CCCCCEEEeccc
Confidence 99999 999999999993
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-12 Score=168.28 Aligned_cols=54 Identities=33% Similarity=0.477 Sum_probs=48.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeee
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEM 76 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~ 76 (2280)
+||+|||||++||+||.+|+++|+ +|+|+||++++||+++|++.+++.++.+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~ 55 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQPGGCAGTFRRRGFTFDVGAT 55 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCccceeccCCEEEeecce
Confidence 689999999999999999999999 699999999999999999887766665543
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=164.36 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=52.4
Q ss_pred CeEEEEcCCHHHHHHHHHhH---CCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcc
Q 037878 179 GKIRRFKGGYTSLWQKLSKY---LPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFP 245 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~---lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~ 245 (2280)
...+.+.||+..+.++|++. .|++|+++++|++|..+++++ +.|++.+| ++++||+||+|+++.
T Consensus 209 ~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~-~~V~~~~g--~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 209 WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRA-TAVHLADG--ERLDADAVVSNADLH 275 (502)
T ss_pred ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEE-EEEEECCC--CEEECCEEEECCcHH
Confidence 45667899999999999864 488999999999999877654 56777788 478999999996654
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=143.99 Aligned_cols=303 Identities=19% Similarity=0.232 Sum_probs=164.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeecccceEEecCCCCceeecccccchh
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVADDYV 101 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (2280)
.+|+|||+|++||+||+.|+++|. +|+||||+.-+|||+.|.+.++..++. +..|++.....|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg~GvGGRlAtRRl~~g~~Dh------GAqYfk~~~~~F---------- 64 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR-EVTVFEKGRGVGGRLATRRLDGGRFDH------GAQYFKPRDELF---------- 64 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc-EEEEEEcCCCcccchheeccCCccccc------cceeecCCchHH----------
Confidence 369999999999999999999999 799999999999999998877655432 222222211111
Q ss_pred hhhccccccchhhhhccccchhhHHHhhhhhhhHHHHHcCCCCcchhhhhhhhcccccccccccHHHHHHHHhhccCCeE
Q 037878 102 SVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAGKI 181 (2280)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (2280)
.+.. +-+.+.++-..-....+.+...+. .......-
T Consensus 65 ----------------------------~~~V-e~~~~~glV~~W~~~~~~~~~~~~---------------~~~~d~~p 100 (331)
T COG3380 65 ----------------------------LRAV-EALRDDGLVDVWTPAVWTFTGDGS---------------PPRGDEDP 100 (331)
T ss_pred ----------------------------HHHH-HHHHhCCceeeccccccccccCCC---------------CCCCCCCc
Confidence 0000 011111111110000110000000 00011111
Q ss_pred EEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCChhhH
Q 037878 182 RRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTE 261 (2280)
Q Consensus 182 ~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~ 261 (2280)
|.-.-||+.|.+.++..+ +|+++++|++|.+.++.| ++++++|. +...+|.||+|.|.| ++.
T Consensus 101 yvg~pgmsalak~LAtdL--~V~~~~rVt~v~~~~~~W--~l~~~~g~-~~~~~d~vvla~PAP-------------Q~~ 162 (331)
T COG3380 101 YVGEPGMSALAKFLATDL--TVVLETRVTEVARTDNDW--TLHTDDGT-RHTQFDDVVLAIPAP-------------QTA 162 (331)
T ss_pred cccCcchHHHHHHHhccc--hhhhhhhhhhheecCCee--EEEecCCC-cccccceEEEecCCC-------------cch
Confidence 456678999999999887 899999999999998888 66665553 467899999997766 222
Q ss_pred hhhcc--CCCChhhHhhhccceeeeeEEEEEeecC-cccCCc-e-------eEEEecCCCCCCCCCCcceeEEeecCCCc
Q 037878 262 SETQV--MDMDELEKELFSKVQTIDYYTTVLKITG-LEHLPV-G-------FYYFGEYMDDPATIGHPVAMQKFFADTDI 330 (2280)
Q Consensus 262 ~~l~~--~~l~~~~k~~~~~~~~~~~~~~i~~~~~-l~~~p~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (2280)
..+.. -++....+..+....|.+.++.+...+. +++ |. + ......+..++... +....
T Consensus 163 ~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~-P~~G~~vdg~~laWla~d~sK~g~~----------p~~~~ 231 (331)
T COG3380 163 TLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDR-PWPGNFVDGHPLAWLARDASKKGHV----------PDGEI 231 (331)
T ss_pred hhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCC-CCCCcccCCCeeeeeeccccCCCCC----------CcCce
Confidence 22211 1222323333444444444443333221 111 11 0 11111111111111 11111
Q ss_pred EEEEec----CCCCCCChHHHHHHHHHHHHhhc----CccceEEEeecCCCCcccchhhhcchhhHHHHHHhcCcCCcee
Q 037878 331 FLFWSY----GNSVDITGPTVTEVAIKTVENMG----GVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYY 402 (2280)
Q Consensus 331 ~~~~~~----g~~~~~s~~e~~~~i~~~L~~~~----~~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~~ 402 (2280)
+.+-.. ....+.++|+....+......+. .+|+.....+|.+.+|+-....- -+ --+..-.+|.
T Consensus 232 ~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~~~------~L--~ad~~~~l~~ 303 (331)
T COG3380 232 WVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVAGP------PL--DADRELPLYA 303 (331)
T ss_pred EEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhccccccccccccCC------cc--ccCCCCceee
Confidence 111100 11144566777766666666653 44888888888888887654432 11 0133467888
Q ss_pred ccccccccccccCchhhHHh
Q 037878 403 VGGLMAFELTERNSSYSMAL 422 (2280)
Q Consensus 403 ~G~~~~~~~~~~~~~y~~~l 422 (2280)
||-+++-+-.|......++.
T Consensus 304 cGDwc~GgrVEgA~LSGlAa 323 (331)
T COG3380 304 CGDWCAGGRVEGAVLSGLAA 323 (331)
T ss_pred ecccccCcchhHHHhccHHH
Confidence 88887776666655544443
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-12 Score=165.23 Aligned_cols=56 Identities=30% Similarity=0.446 Sum_probs=51.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeee
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEM 76 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~ 76 (2280)
+.+||+|||||++||+||.+|+++|+ +|+|+||++++||+++|.+.+++.++.++.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~ 57 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDRVGGRARTFELDGFRFDTGPS 57 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCC-EEEEEEecCCCCcceEEEeccceEeccCcc
Confidence 46899999999999999999999999 699999999999999999999888877764
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=131.51 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=85.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecc--cCCC--ceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGF--YSSI--GFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~--~~~~--~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.+||+++.|+..+.+.....++|||+|.|++++.|.++. +... ....++++||++|+||.++.+.+|++||++|+|
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i 83 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVV 83 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEE
Confidence 579999999988777766789999999999999997533 2222 236789999999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCCCc
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
|++|+|+++ +|+++.|.|+||+
T Consensus 84 ~~gs~v~~~--~~~~~~~~G~Pa~ 105 (107)
T cd05825 84 GARSVVVRD--LPAWTVYAGNPAV 105 (107)
T ss_pred CCCCEEeCc--CCCCCEEECCccE
Confidence 999999998 9999999999964
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=167.82 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=119.9
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTS 257 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~ 257 (2280)
.+.+....|++..+...+++..|.+|++|++|++|+.+++++ .+.+.+| ++++||+||+|+|++....+.|.|+.+
T Consensus 201 ~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v--~v~~~~g--~~~~ad~VI~a~p~~~l~~i~~~p~l~ 276 (450)
T PF01593_consen 201 FGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGV--TVTTEDG--ETIEADAVISAVPPSVLKNILLLPPLP 276 (450)
T ss_dssp SSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEE--EEEETTS--SEEEESEEEE-S-HHHHHTSEEESTSH
T ss_pred ccceeecccchhHHHHHHHhhcCceeecCCcceecccccccc--ccccccc--eEEecceeeecCchhhhhhhhhccccc
Confidence 345566778888888888888888999999999999999855 6777788 478999999999988777777777665
Q ss_pred hhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC-cccCC-ceeEEEecCCCCCCCCCCcceeEEeecC---CC-cE
Q 037878 258 KPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG-LEHLP-VGFYYFGEYMDDPATIGHPVAMQKFFAD---TD-IF 331 (2280)
Q Consensus 258 ~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~-l~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~ 331 (2280)
......+ ..+.+.......+.... +.... ..+++...... .. ........... .+ ..
T Consensus 277 ~~~~~a~-------------~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~l 339 (450)
T PF01593_consen 277 EDKRRAI-------------ENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGF--SP--IGYVSDPSKFPGRPGGGVL 339 (450)
T ss_dssp HHHHHHH-------------HTEEEEEEEEEEEEESSGGGGSTTTESEEEEESST--SS--EEEEEEECCTTSCTTSEEE
T ss_pred ccccccc-------------cccccCcceeEEEeeecccccccccccceecccCc--cc--cccccccccCcccccCCcc
Confidence 5544443 23333333322222211 11111 12222222110 00 00000000011 11 12
Q ss_pred EEEecCC----CCCCChHHHHHHHHHHHHhhcC-----ccceEEEeecCC-CCcccchhhhcchhhHHHHHHh-cCc-CC
Q 037878 332 LFWSYGN----SVDITGPTVTEVAIKTVENMGG-----VIENVVLQRRFK-YFPHVNSKDMKDGFYDRLEYEL-QGQ-RN 399 (2280)
Q Consensus 332 ~~~~~g~----~~~~s~~e~~~~i~~~L~~~~~-----~p~~~~~~~~~~-~~p~~s~~~~~~g~~~~l~~~l-qg~-~~ 399 (2280)
..+..+. ..+++++++.+.+++.|+++.+ .|......+|.. .++..+......+..++....+ +.. ++
T Consensus 340 ~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (450)
T PF01593_consen 340 TSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPG 419 (450)
T ss_dssp EEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTT
T ss_pred eeeeeccccchhcccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceE
Confidence 2222222 1568899999999999999855 234445556554 5555545455444442232333 444 69
Q ss_pred ceecccccccc
Q 037878 400 TYYVGGLMAFE 410 (2280)
Q Consensus 400 ~~~~G~~~~~~ 410 (2280)
+|+||.++.-.
T Consensus 420 l~~aG~~~~~~ 430 (450)
T PF01593_consen 420 LYFAGDWTSPG 430 (450)
T ss_dssp EEE-SGGGSSS
T ss_pred EEEeecccCCC
Confidence 99999886654
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=136.24 Aligned_cols=93 Identities=17% Similarity=0.317 Sum_probs=74.1
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+.+.||++|+|++++.+ ..+.||++|+||.+++|.+|++||++++||++|+++++..+++++.|.|+|
T Consensus 60 ~~~~Ig~~~~Ig~~~~i------------~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~P 127 (155)
T cd04745 60 QDTVLEENGHIGHGAIL------------HGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSP 127 (155)
T ss_pred CCeEEcCCCEECCCcEE------------ECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCC
Confidence 45788888888888877 567999999999999999999999999999999999976799999999999
Q ss_pred CceeeecccchhhHHHHHhHHHHHHH
Q 037878 1672 SPVMIKNTMHALDDRIEEMDMKYKKI 1697 (2280)
Q Consensus 1672 a~~~~~~~~~~~~~~le~~~p~~~~~ 1697 (2280)
.+..++......+......++|..+
T Consensus 128 -a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
T cd04745 128 -AKVIRELSDEEVAWKTRGTKEYQQL 152 (155)
T ss_pred -ceEeccCCHHHHHHHHHHHHHHHHh
Confidence 5555555444444444444445444
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=163.14 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=69.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.++....+. .+.||+++.|+.++.+.+.. +.....++||+++++|.++.+.+|++||++++||++|
T Consensus 357 ~~i~~~~~i~~~~~ig---~~~ig~~~~Ig~~~~~~~~~----~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~ 429 (456)
T PRK14356 357 AVLGKGAKANHLTYLG---DAEIGAGANIGAGTITCNYD----GVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGS 429 (456)
T ss_pred eEecCCcEeccccccc---CeEECCCCEECCCceeeccc----cccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCC
Confidence 3466666665543222 37888888888887663321 1123468999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCC
Q 037878 1654 VAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~P 1671 (2280)
+|.++ +|++++++|..
T Consensus 430 ~v~~~--~~~~~~~~~~~ 445 (456)
T PRK14356 430 VITKD--VPDGSLAIARG 445 (456)
T ss_pred EEecc--CCCCcEEEEec
Confidence 99999 99999999998
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=145.77 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=70.8
Q ss_pred CeeCCCceeccCCccc----CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1574 AKIGRYCSIRAINPVS----CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~----~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
..||+++.|..++.+. ..+.++||++++|.+++.|+ +.+.||++|+|++++.+..+++|||+++|
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~-----------hd~~IG~~v~i~~~~~i~g~v~Igd~a~I 146 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVA-----------HDCQIGNNVILVNGALLAGHVTVGDRAII 146 (255)
T ss_pred eEECCceEECCccEEecCcccCCcEEEcccceeccCcEEC-----------CCCEECCCcEECCCCccCCceEECCCeEE
Confidence 4577777776654443 23567888888888887775 57899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
|+++.|..+-+|.+++.+.|.-
T Consensus 147 g~~a~V~~~~~IG~~a~Vg~gs 168 (255)
T PRK12461 147 SGNCLVHQFCRIGALAMMAGGS 168 (255)
T ss_pred eCCCEECCCCEECCCcEECCCc
Confidence 9999999998888988887653
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-12 Score=142.12 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccC-------CCceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYS-------SIGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~-------~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||+++.|+..+.+.....++||++|.|+++|.|.++... .+....++++||++|+||.+++|++|++||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 689999999998765665678999999999999999754421 1223467899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
||+||++|+|+++ +|++++|.|+||+
T Consensus 142 ~~~VgagavV~~~--vp~~~vv~G~PAk 167 (169)
T cd03357 142 NSVIGAGSVVTKD--IPANVVAAGNPAR 167 (169)
T ss_pred CCEECCCCEEccc--cCCCcEEEccccE
Confidence 9999999999999 9999999999964
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=145.98 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=76.3
Q ss_pred HHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCce---EeeCeEECCCcEEccCCeeCCCcEeCCC
Q 037878 1570 RLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGF---IFGKVEVQDNSVIGSQSLVLPNSVVSRD 1646 (2280)
Q Consensus 1570 R~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~---~~~~~~IG~~~~iG~~~~v~~g~~ig~~ 1646 (2280)
...|+.|+.++.|+....+.....+.||++|.||++|.|..+...++.. .-++++||++|+||.++.|++|++||+|
T Consensus 202 ~~~GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~ 281 (355)
T PLN02739 202 EVFGIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAG 281 (355)
T ss_pred HHhCcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCC
Confidence 4556666666666655444333456666666666666664333222211 1246899999999999999999999999
Q ss_pred cEEccCccccCCCccCCCcEEecCCCceeeec
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIGSQSPVMIKN 1678 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~ 1678 (2280)
++||++|+|.++ ||++++|.|+||. .++.
T Consensus 282 aiIGAGSVV~kD--VP~~stvvG~PAr-iI~~ 310 (355)
T PLN02739 282 AMVAAGSLVLKD--VPSHSMVAGNPAK-LIGF 310 (355)
T ss_pred CEECCCCEECCC--CCCCcEEEecCCE-Eecc
Confidence 999999999999 9999999999954 3443
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-12 Score=141.29 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=85.7
Q ss_pred cCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1572 LGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1572 lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
.+..||++++|+.++.+.+...++|||+|+|+.+|.|.+..+.. +....++++||++|+||.+++|.+|++||
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG 151 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG 151 (183)
T ss_pred CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEEC
Confidence 36788888888887767777788999999999999997543321 11234789999999999999999999999
Q ss_pred CCcEEccCccccCCCccCCCcEEecCCCce
Q 037878 1645 RDVILGALSVAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
++++||++|+|.++ +|++++|.|+||+.
T Consensus 152 ~~~vIgagsvV~~d--i~~~~i~~G~PAr~ 179 (183)
T PRK10092 152 DNVVVASGAVVTKD--VPDNVVVGGNPARI 179 (183)
T ss_pred CCCEECCCCEEccc--cCCCcEEEecCcEE
Confidence 99999999999999 99999999999543
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=154.31 Aligned_cols=46 Identities=35% Similarity=0.410 Sum_probs=42.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEee
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEI 66 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~ 66 (2280)
..++|+|||||++||+||++|+++|+ +|+|+|+++++||++.+++.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~~gG~~~s~~~ 137 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDVLGGKVAAWKD 137 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCCCCCcceeeEc
Confidence 45789999999999999999999998 69999999999999999863
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=144.98 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=68.9
Q ss_pred eeCCCceeccCCcccC-----CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1575 KIGRYCSIRAINPVSC-----PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~-----~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.||++|.|+..+.+.. ...++|||+|.|+.++.|. +.++||++|+|++++.+..+++||++++|
T Consensus 79 ~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~-----------~~~~IG~~~~i~~~~~i~~~v~Igd~~~I 147 (254)
T cd03351 79 EIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVA-----------HDCVIGNNVILANNATLAGHVEIGDYAII 147 (254)
T ss_pred EECCCCEECCccEEeccccCCCCceEECCCCEECCCCEEC-----------CCCEECCCcEECCCccccCCcEeCCCcEE
Confidence 4555555554433321 2579999999999999884 66799999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
|+++.+.++-.|.+++++.|.-
T Consensus 148 g~~~~i~~~v~Ig~~~~Ig~~s 169 (254)
T cd03351 148 GGLSAVHQFCRIGRHAMVGGGS 169 (254)
T ss_pred CCcceECCCcEECCCCEECcCC
Confidence 9999999987788888886664
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=144.34 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=72.0
Q ss_pred CeeCCCceeccCCcccC-----CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcE
Q 037878 1574 AKIGRYCSIRAINPVSC-----PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVI 1648 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~-----~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~ 1648 (2280)
..||++|.|+..+.+.. .+.+.||+++.|+.++.|. +.++||++|+|++++.+..+++|||+++
T Consensus 77 v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~-----------~~~~Ig~~~~i~~~~~i~~~~~Igd~~~ 145 (254)
T TIGR01852 77 LIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIA-----------HDCVVGNHVILANNATLAGHVEVGDYAI 145 (254)
T ss_pred EEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEc-----------cCCEECCCCEECCCCEECCCcEECCCcE
Confidence 45777777766544432 1478999999999998885 6679999999999999999999999999
Q ss_pred EccCccccCCCccCCCcEEecCC
Q 037878 1649 LGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1649 vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
||+++.+..+-.|.+++.+.+..
T Consensus 146 Ig~~~~i~~~v~Ig~~~~Ig~~s 168 (254)
T TIGR01852 146 IGGLVAVHQFVRIGRYAMIGGLS 168 (254)
T ss_pred EeccCEECCCcEECCCCEEeeee
Confidence 99999999988888999887766
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-11 Score=154.15 Aligned_cols=42 Identities=38% Similarity=0.548 Sum_probs=39.9
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEe
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE 65 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~ 65 (2280)
+|+|||||++||+||++|+++|+ +|+|+|+++++||+++++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~ 42 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSFIGGKVGSWV 42 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCCCceeeeee
Confidence 58999999999999999999998 6999999999999999974
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=145.00 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=70.6
Q ss_pred CeeCCCceeccCCcccC-----CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcE
Q 037878 1574 AKIGRYCSIRAINPVSC-----PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVI 1648 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~-----~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~ 1648 (2280)
+.||+++.|+.++.+.. ...+.||+++.|+.++.|. +.+.||+++.+++++.+..+++|||+++
T Consensus 81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~-----------h~~~IG~~v~i~~~~~i~g~v~Igd~~~ 149 (262)
T PRK05289 81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVA-----------HDCVVGNHVILANNATLAGHVEVGDYAI 149 (262)
T ss_pred EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEEC-----------CeEEECCCeEECCccccccccccCCcEE
Confidence 45666666666544432 2458899999999999885 5679999999999999999999999999
Q ss_pred EccCccccCCCccCCCcEEecC
Q 037878 1649 LGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1649 vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
||.++.|..+-.|.+++.+.+.
T Consensus 150 Ig~~~~i~~~v~Ig~~~~Ig~g 171 (262)
T PRK05289 150 IGGLTAVHQFVRIGAHAMVGGM 171 (262)
T ss_pred EeecceecCCCEECCCCEEeee
Confidence 9999999998778888888665
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-12 Score=146.08 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=74.8
Q ss_pred HcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCce---EeeCeEECCCcEEccCCeeCCCcEeCCCc
Q 037878 1571 LLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGF---IFGKVEVQDNSVIGSQSLVLPNSVVSRDV 1647 (2280)
Q Consensus 1571 ~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~---~~~~~~IG~~~~iG~~~~v~~g~~ig~~~ 1647 (2280)
..|+.|+.++.|+....+.....+.||++|.||++|.|..+...++.. ...+++||++|+||+++.|++|++||+|+
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a 218 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGA 218 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCC
Confidence 345666666666655444433345666666666666664333333211 12457999999999999999999999999
Q ss_pred EEccCccccCCCccCCCcEEecCCCcee
Q 037878 1648 ILGALSVAPMHSVLQRGGIYIGSQSPVM 1675 (2280)
Q Consensus 1648 ~vg~~s~v~~~~~v~~~~~~~G~Pa~~~ 1675 (2280)
+||++|+|.+| +|++++|.|+||+.+
T Consensus 219 ~IGAgSvV~~d--Vp~~~~v~G~PArvi 244 (273)
T PRK11132 219 KIGAGSVVLQP--VPPHTTAAGVPARIV 244 (273)
T ss_pred EECCCCEECcc--cCCCcEEEecCcEEe
Confidence 99999999999 999999999996433
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-12 Score=137.02 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~ 1652 (2280)
+||||++-.+.+.+-+.+.+-..|||+|.|.+++.++...-. ..-++-+|||||+||++++|++|++||+|++||+|
T Consensus 154 aa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~---~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAG 230 (269)
T KOG4750|consen 154 AAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKG---SGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAG 230 (269)
T ss_pred hhhcccceeeccccceeecceeEeccceeeecceeecccccc---ccccCCcccCCeEEccccEEeCCeeECCCcEEecc
Confidence 578888888876654555555666666666666666322111 12245599999999999999999999999999999
Q ss_pred ccccCCCccCCCcEEecCCCc
Q 037878 1653 SVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1653 s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
|+|.|| ||++++.+||||+
T Consensus 231 svV~kD--VP~~~~AvGnPAk 249 (269)
T KOG4750|consen 231 SVVLKD--VPPNTLAVGNPAK 249 (269)
T ss_pred ceEEec--cCCCceecCCchh
Confidence 999999 9999999999953
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=132.72 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=85.0
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeec-ccCCC----------------------ceEeeCeEECCCcE
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPG-FYSSI----------------------GFIFGKVEVQDNSV 1630 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~-~~~~~----------------------~~~~~~~~IG~~~~ 1630 (2280)
.+||++++|+..........++||++|.|+.++.|.++ .+... ....++++||++|+
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 81 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVW 81 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCE
Confidence 47999999987322333368999999999999999766 22111 11357899999999
Q ss_pred EccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeeccc
Q 037878 1631 IGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680 (2280)
Q Consensus 1631 iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~ 1680 (2280)
||.++.+++|++||++|+||++|+|+++ +|+++++.|+||..+.+|..
T Consensus 82 Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~Pa~~i~~~~~ 129 (145)
T cd03349 82 IGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGNPAKVIRYRFD 129 (145)
T ss_pred ECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEecCCEeehhhCC
Confidence 9999999999999999999999999999 99999999999655444443
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=139.49 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=51.1
Q ss_pred eCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeeccc
Q 037878 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~ 1680 (2280)
..++||++|+||++++|.+|++||++++||++|+|.++ +|+++++.|+||+ .+|+..
T Consensus 159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G~PA~-~i~~~~ 215 (231)
T TIGR03532 159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAGVPAK-VIKQVD 215 (231)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCE-EeccCC
Confidence 46799999999999999999999999999999999999 9999999999954 444443
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=138.26 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=52.1
Q ss_pred eeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1620 FGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1620 ~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
.+++.||++|+||.+++|.+|++||++++||++|+|.++ +|+++++.|+||..+.+|.
T Consensus 106 ~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~Pa~~~~~~~ 163 (204)
T TIGR03308 106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVPAKLIRRRF 163 (204)
T ss_pred CCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEecCchHhhhcC
Confidence 467899999999999999999999999999999999999 9999999999965443343
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=143.08 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=86.1
Q ss_pred HHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCce---EeeCeEECCCcEEccCCeeCCCcEeCCC
Q 037878 1570 RLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGF---IFGKVEVQDNSVIGSQSLVLPNSVVSRD 1646 (2280)
Q Consensus 1570 R~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~---~~~~~~IG~~~~iG~~~~v~~g~~ig~~ 1646 (2280)
+.+|+.|+.++.|+.+..+.....++||++|.||++|.|..+...++.. ..++++||++|+||.++.|++|++||++
T Consensus 157 ~~~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 157 DVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred cceeEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 4568888888888877555444578999999999999987666555432 3467899999999999999999999999
Q ss_pred cEEccCccccCCCccCCCcEEecCCCce
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
|+||++|+|+++ ||++++|.|+||..
T Consensus 237 a~IGAgSVV~kd--VP~~~~v~G~PAki 262 (294)
T PLN02694 237 AKIGAGSVVLID--VPPRTTAVGNPARL 262 (294)
T ss_pred CEECCCCEECCc--CCCCcEEEccCcEE
Confidence 999999999999 99999999999643
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=145.24 Aligned_cols=82 Identities=21% Similarity=0.475 Sum_probs=69.7
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCce-----eecCEEECCCcEECCCCEECCCCEECCCCE
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVL-----SFQPIKIARKVSVGPYAVIQKGSVIGEEAE 1391 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~-----~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ 1391 (2280)
..+||++|.|.+... .-+.++||++|.||++|.|.+..+.++.. ++..-+||++|.||+.+.+.||+.|+++++
T Consensus 268 dv~ig~DvvI~p~v~-l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~h 346 (460)
T COG1207 268 DVEIGRDVVIEPNVI-LEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVH 346 (460)
T ss_pred cEEECCceEEecCcE-EeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCe
Confidence 389999999988665 46889999999999999998888776533 456778999999999999999999999999
Q ss_pred ECcCCccC
Q 037878 1392 VAPLQKSE 1399 (2280)
Q Consensus 1392 ig~~s~v~ 1399 (2280)
||+..-++
T Consensus 347 IGNFVEvK 354 (460)
T COG1207 347 IGNFVEVK 354 (460)
T ss_pred EeeeEEEe
Confidence 99977664
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-11 Score=156.63 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=69.7
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~ 1652 (2280)
|++||+.+.|++ ++||++|.||.++.+.++.. ....+++||++|+||.++.|.+|++||++++||++
T Consensus 331 ~~~i~~~~~i~d---------~~Ig~~~~ig~~~~~~~~~~----~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g 397 (430)
T PRK14359 331 GVKAGHLSYLGD---------CEIDEGTNIGAGTITCNYDG----KKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAG 397 (430)
T ss_pred cccccccccccC---------CEECCCCEECCCceEccccC----ccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCC
Confidence 466777777754 67999999999988754321 11236899999999999999999999999999999
Q ss_pred ccccCCCccCCCcEEecCC
Q 037878 1653 SVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1653 s~v~~~~~v~~~~~~~G~P 1671 (2280)
|+|.+| +|+++.+.|..
T Consensus 398 ~~v~~~--v~~~~~~~~~~ 414 (430)
T PRK14359 398 STVTKD--VPKGSLAISRA 414 (430)
T ss_pred CEEccc--cCCCcEEEecc
Confidence 999999 99999999855
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=141.76 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=88.1
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEee--cccCCC------ceEeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIP--GFYSSI------GFIFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~--~~~~~~------~~~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
...||+++.++..+.+.....++||++++++.+|.|.+ |..... ....++++||++||||.+++|+||++||
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG 146 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG 146 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence 46899999999887777889999999999999999987 433221 1235689999999999999999999999
Q ss_pred CCcEEccCccccCCCccCCCcEEecCCCcee
Q 037878 1645 RDVILGALSVAPMHSVLQRGGIYIGSQSPVM 1675 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~ 1675 (2280)
+|++||++|+|++| +|+++++.|+||..+
T Consensus 147 ~gavigagsVVtkd--vp~~~iv~G~Pa~vi 175 (190)
T COG0110 147 EGAVIGAGSVVTKD--VPPYGIVAGNPARVI 175 (190)
T ss_pred CCcEEeeCCEEeCc--cCCCeEEeCCcceEE
Confidence 99999999999999 999999999997533
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=129.49 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=60.9
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
+.||+++.|..++.+ ..++|||+|+||.++.|++|++||++++||++|+|.++..+|+++++.|+|+
T Consensus 67 v~IG~~~~i~~~~~i------------~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~ 133 (164)
T cd04646 67 MIIGSNNVFEVGCKC------------EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADC 133 (164)
T ss_pred eEECCCCEECCCcEE------------EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCce
Confidence 677777777777777 3489999999999999999999999999999999999988999999999995
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-11 Score=137.92 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=62.1
Q ss_pred eEECCCcEeCCC----cEEeecccCCCce-EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEe
Q 037878 1594 VTLGAGVHLGDF----SRIIPGFYSSIGF-IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYI 1668 (2280)
Q Consensus 1594 ~~iG~~~~i~~~----~~i~~~~~~~~~~-~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~ 1668 (2280)
++||.++.|..+ +.|+.....+... ..+.|+||++|.|.+++.|...++||++|+||..+.+....+|-+++...
T Consensus 209 VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~ 288 (338)
T COG1044 209 VEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIG 288 (338)
T ss_pred eEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEe
Confidence 666666666655 5554444444444 45679999999999999999999999999999999999998899999887
Q ss_pred cCCC
Q 037878 1669 GSQS 1672 (2280)
Q Consensus 1669 G~Pa 1672 (2280)
|.-.
T Consensus 289 ~~~~ 292 (338)
T COG1044 289 ARSG 292 (338)
T ss_pred cccc
Confidence 6553
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-10 Score=149.09 Aligned_cols=54 Identities=31% Similarity=0.362 Sum_probs=48.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeee
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEM 76 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~ 76 (2280)
.||+|||||++||+||.+|+++|+ +|+|+||++.+||++++++.+++.++.+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~ 54 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGA-KVLVLERYLIPGGSAGYFEREGYRFDVGAS 54 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC-cEEEEECCCCCCCceeEeccCCEEEEecch
Confidence 489999999999999999999999 699999999999999999887766665544
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=127.33 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=74.2
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
..+.||+++.|++++.+ ..+.||++|+||.++.+.++++||++++|++++.+.++..++++++|.|+|
T Consensus 60 ~~~~Ig~~~~I~~~~~i------------~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~p 127 (154)
T cd04650 60 YPTEIGDYVTIGHNAVV------------HGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVP 127 (154)
T ss_pred CCeEECCCCEECCCcEE------------ECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccC
Confidence 35889999999999887 456899999999999999999999999999999999877799999999999
Q ss_pred CceeeecccchhhHHHHHhHHHHHH
Q 037878 1672 SPVMIKNTMHALDDRIEEMDMKYKK 1696 (2280)
Q Consensus 1672 a~~~~~~~~~~~~~~le~~~p~~~~ 1696 (2280)
.+..+...+...+.+.+....|-+
T Consensus 128 -a~~~~~~~~~~~~~~~~~~~~~~~ 151 (154)
T cd04650 128 -AKVVRKLTEEEIEWIKKNAEEYVE 151 (154)
T ss_pred -ceEeccCCHHHHHHHHHHHHHHHH
Confidence 555566555444544444444433
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-09 Score=141.28 Aligned_cols=44 Identities=32% Similarity=0.509 Sum_probs=41.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEe
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE 65 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~ 65 (2280)
+++|+|||||++||+||+.|+++|+ +|+|+|+++++||++++++
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~~gG~~~s~~ 118 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPFIGGKVGSFV 118 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCCCCCceeeee
Confidence 3599999999999999999999998 6999999999999999885
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=125.78 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=46.6
Q ss_pred eEECCCcEeCCCcEEeecccCCCce-------------EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGF-------------IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVA 1655 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~-------------~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v 1655 (2280)
+.||++++|++++.+.++.+..... ....+.||++++||.++.+.+|++||++++|+++|+|
T Consensus 88 siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 88 SVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred CEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 4567777777777664433322211 1135899999999999999999999999999999987
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-11 Score=134.16 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=86.6
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeeccc---------CC-------CceEeeCeEECCCcEEccCCee
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFY---------SS-------IGFIFGKVEVQDNSVIGSQSLV 1637 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~---------~~-------~~~~~~~~~IG~~~~iG~~~~v 1637 (2280)
.+||++|.|+..+.+.....++||++|.|++++.|.++.+ .+ .....++++||++|+||.++.|
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i 145 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI 145 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence 6899999998877666667899999999999999976432 11 1224578999999999999999
Q ss_pred CCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1638 LPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1638 ~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
.+|++||++|+||++|+|+++ +|++++|.|+||.. +|+.
T Consensus 146 ~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~-ik~~ 184 (192)
T PRK09677 146 LPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKI-IKKY 184 (192)
T ss_pred cCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEE-Eecc
Confidence 999999999999999999998 99999999999544 4443
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=125.62 Aligned_cols=93 Identities=20% Similarity=0.365 Sum_probs=77.7
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+.+.||+++.|+.+|.+ ..+.||++++||.++.+..+++|++++.|++++.+.++..++++++|.|+|
T Consensus 59 ~~~~Ig~~~~I~~~~~i------------~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~ 126 (153)
T cd04645 59 YPTIIGDNVTVGHGAVL------------HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSP 126 (153)
T ss_pred CCeEEcCCcEECCCcEE------------eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCc
Confidence 35889999999999888 347999999999999999999999999999999999987899999999999
Q ss_pred CceeeecccchhhHHHHHhHHHHHHH
Q 037878 1672 SPVMIKNTMHALDDRIEEMDMKYKKI 1697 (2280)
Q Consensus 1672 a~~~~~~~~~~~~~~le~~~p~~~~~ 1697 (2280)
+ +..++........+.+..+.|.++
T Consensus 127 ~-~~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
T cd04645 127 A-KVVRELTDEEIAELRESAEHYVEL 151 (153)
T ss_pred c-hhcccCCHHHHHHHHHHHHHHhhc
Confidence 4 445666655556666667777654
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-10 Score=139.88 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=78.8
Q ss_pred CCeeCCCceeccCCcccC--CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1573 GAKIGRYCSIRAINPVSC--PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~--~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
++.||++|+|+.++.+.. .+.+.||++|.|++.+.|+ +.++||++|+|++++.|..+++||++++||
T Consensus 203 ~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~-----------~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig 271 (343)
T PRK00892 203 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIA-----------HNVVIGRHTAIAAQVGIAGSTKIGRYCMIG 271 (343)
T ss_pred cEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEc-----------cCCEECCCcEEeeeeeecCCCEECCceEEC
Confidence 468999999999876643 3578999999999999885 678999999999999999999999999999
Q ss_pred cCccccCCCccCCCcEEecCCC
Q 037878 1651 ALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1651 ~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
.++.|..+-+|.+++.+.|.-.
T Consensus 272 ~~~~i~~~~~ig~~~~i~~~s~ 293 (343)
T PRK00892 272 GQVGIAGHLEIGDGVTITAMSG 293 (343)
T ss_pred CCCEEcCCCEECCCCEEecCCe
Confidence 9999999988999999988753
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.6e-09 Score=131.96 Aligned_cols=236 Identities=12% Similarity=0.110 Sum_probs=144.2
Q ss_pred eEEEEeccCCCCCceEEEEchHHHHHHHHHH-HHH--cCCCCCcEEEEE--cCchhhhhHHHHHHHHHHccceEEEeCcc
Q 037878 637 LCFLQFTSGSTGDAKGVMITHGGLIHNVKLM-RKR--YKSTSKTVLVSW--LPQYHDMGLIGGLFTAMVGGSTAILFSPL 711 (2280)
Q Consensus 637 ~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~-~~~--~~~~~~d~~l~~--~pl~h~~gl~~~i~~~L~~G~~~vl~~~~ 711 (2280)
-.++.-||||||+|=.+.++........... ... .+...++++..+ .+. + ++..+... .+-++..
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~-------ly~~~~~~--~~~~~~~ 170 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-N-------LYQSVNNR--WISLDFF 170 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-h-------HHHHHHhc--cceeeec
Confidence 4567779999999999999988753332221 111 234444555443 221 1 11112221 1101122
Q ss_pred ccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCc
Q 037878 712 TFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQG 791 (2280)
Q Consensus 712 ~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~ 791 (2280)
.+..+...+++.|++++++++.++|+.+..+++...... .+ .+++.++++||+++++..+.+.+.+ ++
T Consensus 171 ~l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~-----l~-~~~k~ii~~~E~l~~~~r~~Ie~~f------g~ 238 (430)
T TIGR02304 171 DLLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGE-----LT-IKPKKVISVAEVLEPQDRELIRNVF------KN 238 (430)
T ss_pred CCCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcC-----CC-CCceEEEEccCCCCHHHHHHHHHHh------CC
Confidence 223467789999999999999999999999988765533 12 3689999999999999888888775 57
Q ss_pred ccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCc--eEEEEcCCCCcccCCCCCeeEEEEcCCCccccc
Q 037878 792 VMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDV--DIRIVNPETSEEIGEPGKEGEVWISSPSAGIGY 869 (2280)
Q Consensus 792 ~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~--~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY 869 (2280)
++++.||.|| +.+++.... + ...+. -... |..++|+++ .++.+|.+ +
T Consensus 239 ~V~~~YG~tE-g~la~eC~~-g-~lHl~-------------ed~~~vE~~ivD~~~---------~~~~ViT~------L 287 (430)
T TIGR02304 239 TVHQIYQATE-GFLASTCRC-G-TLHLN-------------EDLVHIEKQYLDEHK---------RFVPIITD------F 287 (430)
T ss_pred CeeEccCCch-hheEEecCC-C-CEEEc-------------cccEEEEeeEECCCC---------ceEEEEec------C
Confidence 8999999999 443322111 1 11110 0122 333778653 13334443 3
Q ss_pred CCCchhhHHHHhhhccCCCCCceeecCcEEEEE-C----C----eE-EEEecCCCeEEE---CCe--eechHHHHHHHHh
Q 037878 870 WGREELSQITFRNELQNNRGRKYTRTGDLGRII-D----G----KF-FITGRIKDLIIV---AGR--NVYSADVEKTVES 934 (2280)
Q Consensus 870 ~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-d----G----~l-~~~GR~dd~IKi---~G~--rI~~~EIE~~L~~ 934 (2280)
.|. .+ |. -=|+|||++++. + | .| .+.||.||++++ +|. +|.|..++.++..
T Consensus 288 ~n~------~~---Pl-----IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~ 353 (430)
T TIGR02304 288 TRT------TQ---PI-----VRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILF 353 (430)
T ss_pred CCc------cc---eE-----EeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHh
Confidence 221 10 10 127999999883 2 3 24 388999999997 354 4599999988554
Q ss_pred -ccCCc
Q 037878 935 -STEHI 939 (2280)
Q Consensus 935 -~p~v~ 939 (2280)
.+++.
T Consensus 354 ~~~~i~ 359 (430)
T TIGR02304 354 TLPLIV 359 (430)
T ss_pred cCCCCc
Confidence 45553
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-10 Score=121.58 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=57.1
Q ss_pred ceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCC-cEEecCC
Q 037878 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRG-GIYIGSQ 1671 (2280)
Q Consensus 1593 ~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~-~~~~G~P 1671 (2280)
.+.||++|+|+.++.|. ..++||+++.||.+++|.++++|+++ |++|+|.|| +|++ +.+.|+|
T Consensus 75 ~v~Ig~~~~Ig~~a~I~-----------~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~--~~~~~~~~~g~~ 138 (139)
T cd03350 75 PVIIEDDVFIGANCEVV-----------EGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGR--VPPGSVVVAGSL 138 (139)
T ss_pred CeEECCCCEECCCCEEC-----------CCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecc--cCCCCEEecccC
Confidence 47788888888888874 56789999999999999999999999 999999999 9999 8899999
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.5e-10 Score=136.30 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=45.5
Q ss_pred eeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1620 FGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1620 ~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
.+.++||++|.|++++.+..+++||++++||.++.|..+-.|.+++...|.-
T Consensus 233 ~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s 284 (324)
T TIGR01853 233 AHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKS 284 (324)
T ss_pred CCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCC
Confidence 3567889999999999999999999999999999999888889998887664
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-11 Score=134.98 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=89.0
Q ss_pred HhhhcCCcchHHHHHHHhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--eccc---CCCcceEeeeEE
Q 037878 2166 FVEMTSGSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYE---GDGGKVKFGKIR 2240 (2280)
Q Consensus 2166 ~~~~~~~~~~~~~~~r~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~---~~~~~~~~~~~~ 2240 (2280)
|.+...++.+.+.+...+|.+|-+|++|+|+.++.+.+...|+|| |+|.|+++|.|.| |..+ +.++.+...+|+
T Consensus 55 ~~~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IG-d~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~ 133 (203)
T PRK09527 55 FATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIG-DNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT 133 (203)
T ss_pred hhhcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEEC-CCCEECCCCEEEeCCCCCChhhccccccccCCeE
Confidence 445555555666555556655557799999999888888899999 9999999999997 5443 234566788999
Q ss_pred EccCeEEccceeEcCCcEeCCCceecccceeecc
Q 037878 2241 IGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2241 ~~~~~~~g~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
||++||||++|+|++|++||++++|+++|+|+|.
T Consensus 134 IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd 167 (203)
T PRK09527 134 IGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD 167 (203)
T ss_pred ECCCcEECCCCEEcCCCEECCCCEECCCCEEccc
Confidence 9999999999999999999999999999999984
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=127.11 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=70.0
Q ss_pred HcCCeeCCCceeccCCcccCC------cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1571 LLGAKIGRYCSIRAINPVSCP------QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1571 ~lG~~IG~~~~i~~~~~~~~~------~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
..|+.|+.+++|+....+..+ +.++||++|+|++++.|+...... ....++||++|+||.++.|.++++||
T Consensus 59 ~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~---~~~~~~Ig~~v~Ig~~a~I~~~v~IG 135 (162)
T TIGR01172 59 LTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEK---GKRHPTVGEGVMIGAGAKVLGNIEVG 135 (162)
T ss_pred eeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCcccc---CCcCCEECCCcEEcCCCEEECCcEEC
Confidence 345666666666655433323 334555555555555554321111 13457999999999999999999999
Q ss_pred CCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1645 RDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
++++||++|+|.+| +|++++|.|+||
T Consensus 136 ~~~~Iga~s~V~~d--vp~~~~~~G~Pa 161 (162)
T TIGR01172 136 ENAKIGANSVVLKD--VPPGATVVGVPA 161 (162)
T ss_pred CCCEECCCCEECCC--CCCCCEEEeecC
Confidence 99999999999999 999999999995
|
Cysteine biosynthesis |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-11 Score=133.24 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=85.9
Q ss_pred CcchHHHHHHHhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccCC---CcceEeeeEEEccCeE
Q 037878 2172 GSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEGD---GGKVKFGKIRIGEGGF 2246 (2280)
Q Consensus 2172 ~~~~~~~~~r~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~~---~~~~~~~~~~~~~~~~ 2246 (2280)
+..+.+.+...+|.+|-+|++++++.++++.+...|+|| |+|.|+++|.++| |..... .+....++|+||++||
T Consensus 59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I~IG-d~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~ 137 (183)
T PRK10092 59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPIRIG-DNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVW 137 (183)
T ss_pred CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceEEEC-CCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcE
Confidence 444555555566777777799999999999999999999 9999999999998 655432 2334468999999999
Q ss_pred EccceeEcCCcEeCCCceecccceeecc
Q 037878 2247 VGSRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2247 ~g~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
||++|+|+||++||++++|+++|+|+|.
T Consensus 138 IG~~a~I~~gv~IG~~~vIgagsvV~~d 165 (183)
T PRK10092 138 IGGRAVINPGVTIGDNVVVASGAVVTKD 165 (183)
T ss_pred ECCCCEECCCCEECCCCEECCCCEEccc
Confidence 9999999999999999999999999984
|
|
| >TIGR03467 HpnE squalene-associated FAD-dependent desaturase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=142.54 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=50.8
Q ss_pred CeEEEEcCCHHHHHHH-HHhHC---CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccc
Q 037878 179 GKIRRFKGGYTSLWQK-LSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKN 248 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~-la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~ 248 (2280)
..++.++||+++++.+ +++.+ |.+|++|++|++|+.+++++.+.+. .+| +++.||+||+|+|+++..
T Consensus 186 ~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~-~~g--~~~~~d~vi~a~p~~~~~ 256 (419)
T TIGR03467 186 SDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVL-SGG--ETLPADAVVLAVPPRHAA 256 (419)
T ss_pred ceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEe-cCC--ccccCCEEEEcCCHHHHH
Confidence 3466788999887655 66544 8899999999999998887654444 355 468999999997766443
|
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=121.92 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=77.3
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|+..........++|||+|.|+++|.|+.+. ....+.++|||+|+||+++.+.++++||++++||++|
T Consensus 48 a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~----~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags 123 (146)
T PRK10191 48 ATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG----ADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGS 123 (146)
T ss_pred CEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCC----cCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCC
Confidence 677777777764334445677888888888888886432 1223567999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|.++ +|+++++.|+||..
T Consensus 124 ~V~~d--v~~~~~v~G~pA~~ 142 (146)
T PRK10191 124 VVLDS--VPDNALVVGEKARV 142 (146)
T ss_pred EECCc--cCCCcEEEccCcEE
Confidence 99999 99999999999643
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-10 Score=134.48 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=73.5
Q ss_pred HcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCc---eEeeCeEECCCcEEccCCeeCCCcEeCCCc
Q 037878 1571 LLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIG---FIFGKVEVQDNSVIGSQSLVLPNSVVSRDV 1647 (2280)
Q Consensus 1571 ~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~---~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~ 1647 (2280)
.+|+.|+.++.|+.+..+....-+.||+++.||++|.|..+...++. ...++++||++|+||.++.|.+|++||+++
T Consensus 224 ~f~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga 303 (360)
T PLN02357 224 AFAVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGA 303 (360)
T ss_pred HhceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCC
Confidence 45666666666665433332223555555555555555333222221 123568999999999999999999999999
Q ss_pred EEccCccccCCCccCCCcEEecCCCceee
Q 037878 1648 ILGALSVAPMHSVLQRGGIYIGSQSPVMI 1676 (2280)
Q Consensus 1648 ~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~ 1676 (2280)
+||++|+|.++ ||+++++.|+||+.+-
T Consensus 304 ~IGAgSVV~~d--VP~~~~v~G~PArvv~ 330 (360)
T PLN02357 304 KIGAGSVVLKD--VPPRTTAVGNPARLIG 330 (360)
T ss_pred EECCCCEECcc--cCCCcEEECCCeEEEc
Confidence 99999999999 9999999999965443
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=118.06 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=79.2
Q ss_pred CeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccCCCcceEeeeEEEccCeEEccceeEcCCcEeCCC
Q 037878 2185 AEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEGDGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENG 2262 (2280)
Q Consensus 2185 ~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 2262 (2280)
.+|| ++++|+.++.|.+...|+|| |+|.|+.+|.+++ |.+...++.+...+++||++||||+++++++|++||++
T Consensus 4 i~iG--~~~~I~~~~~i~~~~~i~IG-~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~ 80 (107)
T cd05825 4 LTIG--DNSWIGEGVWIYNLAPVTIG-SDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG 80 (107)
T ss_pred EEEC--CCCEECCCCEEeeCCceEEC-CCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence 3555 99999999999888999999 9999999999997 77776667888999999999999999999999999999
Q ss_pred ceecccceeec
Q 037878 2263 GSLSSLSLAMK 2273 (2280)
Q Consensus 2263 ~~~~~~s~~~~ 2273 (2280)
++|+++|+|+|
T Consensus 81 ~~i~~gs~v~~ 91 (107)
T cd05825 81 AVVGARSVVVR 91 (107)
T ss_pred CEECCCCEEeC
Confidence 99999999997
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=138.05 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=45.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~ 67 (2280)
|+++.||+|||+|++|+.+|..|+++|+ +|+++|++++.||+.+|.+.+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~yGG~~as~~l~ 49 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGK-KVLHMDRNPYYGGESASLNLT 49 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCC-EEEEecCCCCcCcccccccHH
Confidence 5678999999999999999999999998 699999999999999998543
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-10 Score=131.83 Aligned_cols=93 Identities=23% Similarity=0.374 Sum_probs=80.9
Q ss_pred HHhc-CeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccCCCc----ceEeeeEEEccCeEEccceeE
Q 037878 2181 KLMG-AEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEGDGG----KVKFGKIRIGEGGFVGSRAAA 2253 (2280)
Q Consensus 2181 r~~g-~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~~~~----~~~~~~~~~~~~~~~g~~~~~ 2253 (2280)
..+| .++.+|+.++++..+-+.....++|| ++++++++|.++| |......+ .....+|+||++||||++|+|
T Consensus 61 ~~~~~~~~~iG~~~~i~~~~~~~~~~~i~ig-~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~I 139 (190)
T COG0110 61 IDLGEKNLTIGDLCFIGVNVVILVGEGITIG-DNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVI 139 (190)
T ss_pred EecCCcceEECCeeEEcCCcEEEecCCeEEC-CCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEE
Confidence 3335 66667799999999999999999999 9999999999999 87754222 333668999999999999999
Q ss_pred cCCcEeCCCceecccceeecc
Q 037878 2254 MPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2254 ~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
+||++||+||+||++|+|+|.
T Consensus 140 lpGV~IG~gavigagsVVtkd 160 (190)
T COG0110 140 LPGVTIGEGAVIGAGSVVTKD 160 (190)
T ss_pred CCCEEECCCcEEeeCCEEeCc
Confidence 999999999999999999994
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=119.03 Aligned_cols=75 Identities=24% Similarity=0.217 Sum_probs=57.3
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.|+..+.+ ...+.||++|+|+.+|.| ..++||++|+||+++.| .+++|++++++++++
T Consensus 65 v~Ig~~~~I~~~~~i--~g~~~Ig~~~~Ig~~~~I------------~~~~Ig~~~~Ig~~s~i-~~~~i~~~~~v~~~~ 129 (167)
T cd00710 65 VWIGKNVSIAHGAIV--HGPAYIGDNCFIGFRSVV------------FNAKVGDNCVIGHNAVV-DGVEIPPGRYVPAGA 129 (167)
T ss_pred EEECCCceECCCCEE--eCCEEECCCCEECCCCEE------------ECCEECCCCEEcCCCEE-eCCEeCCCCEECCCC
Confidence 346666666654322 234889999999998888 35789999999999988 478999999999999
Q ss_pred cccCCCccCCCc
Q 037878 1654 VAPMHSVLQRGG 1665 (2280)
Q Consensus 1654 ~v~~~~~v~~~~ 1665 (2280)
++.++ .+.+.
T Consensus 130 ~v~~~--~~~~~ 139 (167)
T cd00710 130 VITSQ--TQADA 139 (167)
T ss_pred EEcCC--Ccccc
Confidence 98877 55533
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=117.25 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=62.1
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
++|||++.|++++.+ ..+.||+++.||.++.|.+++.|++++.|+.+++|..+..++++++|.|+| .
T Consensus 73 v~Ig~~~~Ig~~~~i------------~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~p-a 139 (161)
T cd03359 73 LHIGDYVFIGENCVV------------NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRP-A 139 (161)
T ss_pred eEECCccEECCCCEE------------EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccc-c
Confidence 567777777777777 346788888998889999999999999999999999888899999999999 4
Q ss_pred eeeecccch
Q 037878 1674 VMIKNTMHA 1682 (2280)
Q Consensus 1674 ~~~~~~~~~ 1682 (2280)
+.++.....
T Consensus 140 ~~i~~~~~~ 148 (161)
T cd03359 140 RFIGELPEC 148 (161)
T ss_pred EEEEecchh
Confidence 555555433
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=130.41 Aligned_cols=159 Identities=22% Similarity=0.325 Sum_probs=100.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeecccceEEecCCCCceeeccccc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVAD 98 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (2280)
|+.+||+|||||+|||-||..++++|+ +|+|||+.+.+|=++.-- +.| .-.+.+.....
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~-~V~lid~~~k~GrKil~s---GgG-----------------rCN~Tn~~~~~ 59 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGR-RVLLIDKGPKLGRKILMS---GGG-----------------RCNFTNSEAPD 59 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCC-EEEEEecCccccceeEec---CCC-----------------CccccccccHH
Confidence 356899999999999999999999998 699999999998654331 111 00011111111
Q ss_pred chhhhhccccccchhhhhccccchhhHHHhhhhhhhHHHHHcCCCCcchhhhhhhhcccccccccccHHHHHHHHhhccC
Q 037878 99 DYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMA 178 (2280)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (2280)
.+.... ...+++.......|.......|+.++|..-. ....
T Consensus 60 ~~ls~~----------p~~~~fl~sal~~ft~~d~i~~~e~~Gi~~~-----------------------------e~~~ 100 (408)
T COG2081 60 EFLSRN----------PGNGHFLKSALARFTPEDFIDWVEGLGIALK-----------------------------EEDL 100 (408)
T ss_pred HHHHhC----------CCcchHHHHHHHhCCHHHHHHHHHhcCCeeE-----------------------------EccC
Confidence 011100 0011222233333333333344444443211 1123
Q ss_pred CeEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 179 GKIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
+.+++.....+.+++.+.+++ |++|+++++|.+|++++.+ ..+.+++| ++++||.+|+|
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~--f~l~t~~g--~~i~~d~lilA 162 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG--FRLDTSSG--ETVKCDSLILA 162 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce--EEEEcCCC--CEEEccEEEEe
Confidence 556666677888999987654 8999999999999998864 47888899 48999999999
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-10 Score=116.75 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=80.8
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCce----EeeCeEECCCcEEccCCeeCCCcEeCCCcE
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGF----IFGKVEVQDNSVIGSQSLVLPNSVVSRDVI 1648 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~----~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~ 1648 (2280)
++.||+++.|++.+.+ .+.+.||++|+|++++.+.++.+..... .++.++||++|+||+++.+.+++.||++++
T Consensus 16 ~~~Ig~~~~I~~~~~i--~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ 93 (119)
T cd03358 16 DVKIGDNVKIQSNVSI--YEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYAL 93 (119)
T ss_pred CcEECCCcEECCCcEE--eCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEECCCCE
Confidence 4678888888776433 4568999999999998886544333222 478899999999999999999999999999
Q ss_pred EccCccccCCCccCCCcEEecCCCc
Q 037878 1649 LGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1649 vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
|++++.++++ +|+++.|.|+||+
T Consensus 94 i~~~~~v~~~--i~~~~~~~G~pa~ 116 (119)
T cd03358 94 VGAGAVVTKD--VPPYALVVGNPAR 116 (119)
T ss_pred EccCCEEeCc--CCCCeEEecCcce
Confidence 9999999998 9999999999953
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=118.92 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=62.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.|.....+.. +.|||+|+|+.++.|. +.++||++|+||++++|.++++|+++++++.++
T Consensus 67 v~IG~~~~i~~~~~i~~---~~IGd~~~Ig~~a~I~-----------~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~ 132 (164)
T cd04646 67 MIIGSNNVFEVGCKCEA---LKIGNNNVFESKSFVG-----------KNVIITDGCIIGAGCKLPSSEILPENTVIYGAD 132 (164)
T ss_pred eEECCCCEECCCcEEEe---eEECCCCEEeCCCEEC-----------CCCEECCCCEEeCCeEECCCcEECCCeEEeCCc
Confidence 57888888877644433 9999999999999995 668999999999999999999999999999999
Q ss_pred cccCCC
Q 037878 1654 VAPMHS 1659 (2280)
Q Consensus 1654 ~v~~~~ 1659 (2280)
.+.+..
T Consensus 133 ~~~~~~ 138 (164)
T cd04646 133 CLRRTQ 138 (164)
T ss_pred eEEEec
Confidence 998873
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=112.69 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=84.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC--C------ceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS--I------GFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~--~------~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
.+||++++|+..+.+..++.+.||++|.|+++|.|.++.... . ....++++||++|+||.++.+.+++.||+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 579999999988766656789999999999999997663221 1 23468899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
++.|++++.|.++ +|++++|.|+||+
T Consensus 82 ~~~i~~~~~v~~~--i~~~~i~~g~pa~ 107 (109)
T cd04647 82 GAVVGAGSVVTKD--VPPNSIVAGNPAK 107 (109)
T ss_pred CCEECCCCEEeeE--CCCCCEEEccccE
Confidence 9999999999987 9999999999964
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-09 Score=119.67 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=52.4
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEe-c-
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYI-G- 1669 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~-G- 1669 (2280)
+.+.|||+|+||.+|.|. +.++||++|+||++++|.++++|.+.. +++++.++ ||+++++. |
T Consensus 172 ~~ViIgDnv~IGa~a~I~-----------~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~~--vp~~svv~~g~ 235 (269)
T TIGR00965 172 NPTIIEDNCFIGARSEIV-----------EGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYGR--VPAGSVVVSGN 235 (269)
T ss_pred CCeEECCCCEECCCCEEc-----------CCCEECCCCEEeCCCEECCCCEEeccc---CCceeeee--cCCCcEEecCC
Confidence 347777778888888774 566889999999999999999999977 77888877 99999998 4
Q ss_pred CC
Q 037878 1670 SQ 1671 (2280)
Q Consensus 1670 ~P 1671 (2280)
.|
T Consensus 236 ~p 237 (269)
T TIGR00965 236 LP 237 (269)
T ss_pred ee
Confidence 56
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-10 Score=103.28 Aligned_cols=67 Identities=22% Similarity=0.490 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHH
Q 037878 1084 EFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFS 1150 (2280)
Q Consensus 1084 ~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l 1150 (2280)
++++++|+++++.++++++++++||++|+|||.+++++..+++++|+.++..++|++||+++|++++
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4689999999999888999999999999999999999999999999999999999999999999875
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-09 Score=123.11 Aligned_cols=66 Identities=21% Similarity=0.420 Sum_probs=58.3
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
+.||++++|+.++.+. +.++||++|+||.++.+.+++.||++++||++|++.++ +|++++|.|+||
T Consensus 136 ~~ig~~~~i~~~~~i~-----------~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~pa 201 (201)
T TIGR03570 136 CVIGDYVHIAPGVTLS-----------GGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVPA 201 (201)
T ss_pred CEECCCCEECCCCEEe-----------CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEEeccC
Confidence 4566667777777764 56789999999999999999999999999999999998 999999999995
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=118.52 Aligned_cols=88 Identities=19% Similarity=0.310 Sum_probs=75.7
Q ss_pred CCeeCCCceeccCCcccC--CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1573 GAKIGRYCSIRAINPVSC--PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~--~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
+++||+++.|+....+.. .+.+.||+++.|++++.|. +.++||++++|++++.+..+++||+++.||
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~-----------~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig 160 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIA-----------HNVRIGENCLIAAQVGIAGSTTIGDNVIIG 160 (205)
T ss_pred eEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEe-----------CCCEECCCCEECCCCEEccccEECCCeEEc
Confidence 368999999988755432 4578999999999999885 567999999999999999999999999999
Q ss_pred cCccccCCCccCCCcEEecCC
Q 037878 1651 ALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1651 ~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+++.+..+..+.+++.+.+.-
T Consensus 161 ~~~~v~~~~~ig~~~~i~~~s 181 (205)
T cd03352 161 GQVGIAGHLTIGDGVVIGAGS 181 (205)
T ss_pred CCCEEeCCcEECCCCEEcCCC
Confidence 999999998889988876553
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-09 Score=108.99 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCce---EeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGF---IFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~---~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
|..||+++.|+..+.+..+..+.||+++.|+++|.|..+....... ..+++.||++|+||.++.+.++++||++++|
T Consensus 2 ~~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i 81 (101)
T cd03354 2 GIDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKI 81 (101)
T ss_pred ceEeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEE
Confidence 4455555555554433332334445555555554443322222211 3678899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+++|.+.++ +|++++|.|+|
T Consensus 82 ~~~~~i~~~--~~~~~~~~G~P 101 (101)
T cd03354 82 GANAVVTKD--VPANSTVVGVP 101 (101)
T ss_pred CCCCEECcc--cCCCCEEEeCC
Confidence 999999998 99999999998
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-09 Score=121.43 Aligned_cols=88 Identities=19% Similarity=0.350 Sum_probs=76.4
Q ss_pred cCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccCC---CcceEeeeEEEccCeEEccceeEcCCcE
Q 037878 2184 GAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEGD---GGKVKFGKIRIGEGGFVGSRAAAMPGVR 2258 (2280)
Q Consensus 2184 g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 2258 (2280)
+++|| ++++|+.++.+.+...|+|| +++.|+++|.|.+ |..... ++....++++||++||||++|+|++|++
T Consensus 62 ~i~IG--~~v~I~~~~~i~~~~~i~IG-~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~ 138 (169)
T cd03357 62 NIHIG--DNFYANFNCTILDVAPVTIG-DNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVT 138 (169)
T ss_pred cCEEC--CCceEcCCEEEeccCcEEEC-CCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCE
Confidence 45666 99999999888888899999 9999999999998 544321 2345678999999999999999999999
Q ss_pred eCCCceecccceeecc
Q 037878 2259 IENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2259 ~~~~~~~~~~s~~~~~ 2274 (2280)
||++++||++|+|++.
T Consensus 139 Ig~~~~VgagavV~~~ 154 (169)
T cd03357 139 IGDNSVIGAGSVVTKD 154 (169)
T ss_pred ECCCCEECCCCEEccc
Confidence 9999999999999984
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.2e-09 Score=135.40 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=62.3
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~ 1645 (2280)
|++||+++.|+..+.+. .+.|++++.+++.+.+ +.++||++|+||.++++.. +++||+
T Consensus 340 ~~~Ig~~~~Ig~~~~i~---~~~i~~~~~ig~~~~~------------~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~ 404 (481)
T PRK14358 340 GTVLGEGVHIGNFVETK---NARLDAGVKAGHLAYL------------GDVTIGAETNVGAGTIVANFDGVNKHQSKVGA 404 (481)
T ss_pred CcEECCCCEECCCEEEC---CceecCCcccCceEEE------------CCeEEcCCceEcCCEEEeCCCCccCCCCEECC
Confidence 46778888777753322 3556777777666555 6789999999999998863 579999
Q ss_pred CcEEccCccccCCCccCCCcEEe
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYI 1668 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~ 1668 (2280)
+++||++|.+..+..|.+++...
T Consensus 405 ~~~ig~~~~i~~~~~Ig~~~~i~ 427 (481)
T PRK14358 405 GVFIGSNTTLIAPRVVGDAAFIA 427 (481)
T ss_pred CeEEcCCCEEcCCcEECCCCEEC
Confidence 99999999998887788888775
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.7e-09 Score=118.97 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=56.9
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+.||++|+|+.++.+. +.++||++|+||.++.+.++++||++++||++|+|.++ +|++++|.|+|
T Consensus 133 ~~ig~~~~i~~~~~i~-----------~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~g~p 197 (197)
T cd03360 133 CVIGDFVHIAPGVVLS-----------GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVVGNP 197 (197)
T ss_pred CEECCCCEECCCCEEc-----------CCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEEecC
Confidence 4466666666666663 45789999999999999999999999999999999999 99999999998
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=117.31 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=57.4
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEe-cC--
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYI-GS-- 1670 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~-G~-- 1670 (2280)
+.|||+|+||.+|.|. ..++||++|.||+++.|.+++.|+++ .+++++.++ +|+++++. |+
T Consensus 177 viIgDnv~IGa~s~I~-----------~Gv~IGdgavIgag~vV~~gt~I~~~---~~g~v~~g~--vp~~svvv~g~~~ 240 (272)
T PRK11830 177 VIIEDNCFIGARSEVV-----------EGVIVEEGSVLGMGVFLGQSTKIYDR---ETGEVHYGR--VPAGSVVVPGSLP 240 (272)
T ss_pred eEEcCCCEECCCCEEc-----------CCCEECCCCEEcCCCEEcCCeEECcC---CCCcEEeee--cCCCcEEecCccc
Confidence 6777777777777773 45688888888888888888888887 377888877 99999987 74
Q ss_pred --------CCceeeecccchhhH
Q 037878 1671 --------QSPVMIKNTMHALDD 1685 (2280)
Q Consensus 1671 --------Pa~~~~~~~~~~~~~ 1685 (2280)
+++.++++.....+.
T Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~ 263 (272)
T PRK11830 241 SKDGGYSLYCAVIVKKVDAKTRS 263 (272)
T ss_pred ccCCCcCCcCcEEEEEccccchh
Confidence 346777666544333
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-09 Score=111.59 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=72.7
Q ss_pred CCEECCCcEEC-ccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcC
Q 037878 1317 GAKLGSSVLLD-TVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPL 1395 (2280)
Q Consensus 1317 Ga~Ig~~v~i~-~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~ 1395 (2280)
||+||+++.|+ ..-++.-.-.+|||||.|-.+|+|++-.-+.+ -..-+||+|+.||++|.|+.+.+||||+.||++
T Consensus 73 ~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g---~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~ 149 (194)
T COG1045 73 GAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESG---KRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAG 149 (194)
T ss_pred CCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCC---CCCCccCCCeEECCCCEEEcceEECCCCEECCC
Confidence 67777777773 33333344566777777777777776555444 345689999999999999999999999999999
Q ss_pred Ccc----CCCCccccCCCceeec
Q 037878 1396 QKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1396 s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
|+| |+++.+ .|.|++...
T Consensus 150 sVVlkdVP~~~tv-vGvPArii~ 171 (194)
T COG1045 150 SVVLKDVPPNATV-VGVPARVIG 171 (194)
T ss_pred ceEccCCCCCceE-ecCcceEec
Confidence 999 788888 899999874
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=111.29 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=62.0
Q ss_pred eeCCCceeccCCccc--CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccC
Q 037878 1575 KIGRYCSIRAINPVS--CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~--~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~ 1652 (2280)
.||++|.|+..+.+. ..+.+.||+++.|+.++.|. ++++||++|+||.++.|. +++||+++.||++
T Consensus 44 ~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~-----------g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~ 111 (167)
T cd00710 44 IIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVH-----------GPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHN 111 (167)
T ss_pred EECCCCEECCCeEEEecCCCCEEECCCceECCCCEEe-----------CCEEECCCCEECCCCEEE-CCEECCCCEEcCC
Confidence 355555555443331 13568999999999999985 678999999999999997 7999999999999
Q ss_pred ccccCCCccCCCcEE
Q 037878 1653 SVAPMHSVLQRGGIY 1667 (2280)
Q Consensus 1653 s~v~~~~~v~~~~~~ 1667 (2280)
|.+.+ ..++++..+
T Consensus 112 s~i~~-~~i~~~~~v 125 (167)
T cd00710 112 AVVDG-VEIPPGRYV 125 (167)
T ss_pred CEEeC-CEeCCCCEE
Confidence 99963 347777766
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=105.54 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~ 1652 (2280)
+++||+++.|+.. .-..++||++|.|+++|.|... .++ ....+++||++|+||.++.| |++||+|++||++
T Consensus 31 ~a~IG~~~iIn~~----ig~~a~Ighd~~IG~~~~I~~~--l~G-~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaG 101 (147)
T cd04649 31 NAGTLGNCMVEGR----ISSGVIVGKGSDVGGGASIMGT--LSG-GGNNVISIGKRCLLGANSGI--GISLGDNCIVEAG 101 (147)
T ss_pred CCEECCCeEECCc----ccCCEEECCCCEECCCCEEEEE--CCC-CcccCEEECCCCEECCCCEE--eEEECCCCEECCC
Confidence 3567777777621 1123788888888888888622 222 24467999999999999999 8999999999999
Q ss_pred ccccCCCcc
Q 037878 1653 SVAPMHSVL 1661 (2280)
Q Consensus 1653 s~v~~~~~v 1661 (2280)
|+|+++.++
T Consensus 102 svV~k~t~i 110 (147)
T cd04649 102 LYVTAGTKV 110 (147)
T ss_pred CEEeCCeEE
Confidence 999999543
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=127.50 Aligned_cols=150 Identities=25% Similarity=0.388 Sum_probs=78.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC--------ceEEEEeecCccceeeeecccceEEecCCCCceee
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG--------GMCESVEIEEAGAELEEMDSHKLALIDGSTGEFQD 93 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG--------G~~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 93 (2280)
+||+|||||+|||.||+.|++.|. +|+||||++++| |||+-..... ....|...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~-~V~vlE~~~~~gkKil~tG~GrCN~tn~~~----------~~~~~~~~------- 62 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA-RVLVLERNKRVGKKILITGNGRCNLTNLNI----------DPSEFLSG------- 62 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-HHHHHCGGGT-EEEETTS----------SGGGEECS-------
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCcccccceeecCCCCcccccccc----------chhhHhhh-------
Confidence 589999999999999999999998 699999999986 4554322000 00000000
Q ss_pred cccccchhhhhccccccchhhhhccccchhhHHHhhhhhhhHHHHHcCCCCcchhhhhhhhcccccccccccHHHHHHHH
Q 037878 94 IKVADDYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFT 173 (2280)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (2280)
++ ....+.......+.......|+.+.|....
T Consensus 63 ~~--------------------~~~~f~~~~l~~f~~~d~~~ff~~~Gv~~~---------------------------- 94 (409)
T PF03486_consen 63 YG--------------------RNPKFLKSALKRFSPEDLIAFFEELGVPTK---------------------------- 94 (409)
T ss_dssp -T--------------------BTTTCTHHHHHHS-HHHHHHHHHHTT--EE----------------------------
T ss_pred cc--------------------cchHHHHHHHhcCCHHHHHHHHHhcCCeEE----------------------------
Confidence 00 001111222222322222345544443210
Q ss_pred hhccCCeEEEEcCCHHHHHHHHHh---HCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 174 RTSMAGKIRRFKGGYTSLWQKLSK---YLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 174 ~~~~~~~~~~~~gG~~~l~~~la~---~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
....+..|+...-...+.+.|.+ +.|++|+++++|.+|+.++++. ..|+++++ ++++||+||+|
T Consensus 95 -~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~-f~v~~~~~--~~~~a~~vILA 161 (409)
T PF03486_consen 95 -IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGV-FGVKTKNG--GEYEADAVILA 161 (409)
T ss_dssp -E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEE-EEEEETTT--EEEEESEEEE-
T ss_pred -EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCce-eEeeccCc--ccccCCEEEEe
Confidence 01123444444456667777654 4589999999999999988863 46777555 58999999999
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-09 Score=121.33 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=69.4
Q ss_pred HcCCEECCCcEECc-cccCCCCceEECCCCEeCCCCEEeeccccCCc---eeecCEEECCCcEECCCCEECCCCEECCCC
Q 037878 1315 MLGAKLGSSVLLDT-VDITDPSLVLIGDGAVISEGALIQSHEVKNGV---LSFQPIKIARKVSVGPYAVIQKGSVIGEEA 1390 (2280)
Q Consensus 1315 ~lGa~Ig~~v~i~~-~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~---~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a 1390 (2280)
..|+.|++++.|+. ..+.....++||++|.||++|.|......++. ......+||+||+||++|+|.+|++||+|+
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a 218 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGA 218 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCC
Confidence 34555555555542 22212234567777777777777544433321 112357999999999999999999999999
Q ss_pred EECcCCcc----CCCCccccCCCceeec
Q 037878 1391 EVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1391 ~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
+||++|+| |+++.+ .|+|++...
T Consensus 219 ~IGAgSvV~~dVp~~~~v-~G~PArvi~ 245 (273)
T PRK11132 219 KIGAGSVVLQPVPPHTTA-AGVPARIVG 245 (273)
T ss_pred EECCCCEECcccCCCcEE-EecCcEEeC
Confidence 99999998 888888 899999763
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=115.73 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=56.8
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCc---eEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIG---FIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~---~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
|+.||+++.|.+. ++||++|.||++|.|.++...++. ...++++|||+||||.+|.|.+|++||++|+|
T Consensus 129 ga~IGeGt~I~~~--------a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavI 200 (269)
T TIGR00965 129 GAYVDEGTMVDTW--------ATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVI 200 (269)
T ss_pred CcEECCCCEECCC--------cEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEE
Confidence 3567777777765 334444444444444333222222 24578999999999999999999999999999
Q ss_pred ccCccccCCCc
Q 037878 1650 GALSVAPMHSV 1660 (2280)
Q Consensus 1650 g~~s~v~~~~~ 1660 (2280)
|++++|.++.+
T Consensus 201 GaGavI~~~~~ 211 (269)
T TIGR00965 201 SMGVFIGQSTK 211 (269)
T ss_pred eCCCEECCCCE
Confidence 99999998843
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=116.34 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=58.4
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE-ccC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL-GAL 1652 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v-g~~ 1652 (2280)
+.||++|.|+.++.+ +.++|||+|+|+.++.|. ..++||++|.||++++|.++++|++++++ |.-
T Consensus 120 siIG~~v~IG~~avI---~g~~Igd~v~IG~ga~I~-----------~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~P 185 (269)
T PLN02296 120 TIIGDNVTIGHSAVL---HGCTVEDEAFVGMGATLL-----------DGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNP 185 (269)
T ss_pred cEeCCCCEECCCcee---cCCEECCCcEECCCcEEC-----------CCeEECCCCEECCCCEEecCCEeCCCeEEeccC
Confidence 578999999887544 348899999999999885 56799999999999999999999999986 555
Q ss_pred ccccCC
Q 037878 1653 SVAPMH 1658 (2280)
Q Consensus 1653 s~v~~~ 1658 (2280)
+.+.++
T Consensus 186 A~~ir~ 191 (269)
T PLN02296 186 AKFLRK 191 (269)
T ss_pred cEEeCC
Confidence 555555
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=110.32 Aligned_cols=95 Identities=19% Similarity=0.074 Sum_probs=78.0
Q ss_pred CEECCCcEECc-cccCCCCceEECCCCEeCCCCEEeec---cccC--------------------CceeecCEEECCCcE
Q 037878 1318 AKLGSSVLLDT-VDITDPSLVLIGDGAVISEGALIQSH---EVKN--------------------GVLSFQPIKIARKVS 1373 (2280)
Q Consensus 1318 a~Ig~~v~i~~-~~~~~~~~~~IG~~~~I~~~~~l~~~---~~~~--------------------~~~~~~~i~Ig~~~~ 1373 (2280)
.+||+++.|+. ........++||++|.|+++|.|..+ .+.. .....+++.||++|+
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 81 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVW 81 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCE
Confidence 47999999976 44444468999999999999999655 2221 122457899999999
Q ss_pred ECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceee
Q 037878 1374 VGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYV 1413 (2280)
Q Consensus 1374 iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~ 1413 (2280)
||++++|.+|++||++++||++|+| ++++.+ .|+||+..
T Consensus 82 Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~-~G~Pa~~i 124 (145)
T cd03349 82 IGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIV-GGNPAKVI 124 (145)
T ss_pred ECCCCEEeCCCEECCCCEECCCCEEccccCCCeEE-EecCCEee
Confidence 9999999999999999999999997 777777 89999876
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=127.94 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=41.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC----CCCceEEEecCCCCCceEEEEee
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKL----GYRNVTLLEKYHTVGGMCESVEI 66 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~----G~~~VtVlEk~~riGG~~~t~~~ 66 (2280)
+.+++|+|||||+|||+||++|.+. |. +|+||||++++||+++++..
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~~GG~~~~~~~ 70 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDVPGGSLDGAGN 70 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCCCCCCccCccc
Confidence 3468999999999999999999996 56 69999999999999987653
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.4e-09 Score=120.15 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=77.9
Q ss_pred HHcCCEECCCcEECccc-cCCCCceEECCCCEeCCCCEEeeccccCCce---eecCEEECCCcEECCCCEECCCCEECCC
Q 037878 1314 EMLGAKLGSSVLLDTVD-ITDPSLVLIGDGAVISEGALIQSHEVKNGVL---SFQPIKIARKVSVGPYAVIQKGSVIGEE 1389 (2280)
Q Consensus 1314 R~lGa~Ig~~v~i~~~~-~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~---~~~~i~Ig~~~~iG~~~~i~pg~~ig~~ 1389 (2280)
+.+|..|+.++.|+... +.....++||++|.||++|.|..+...++.. ..+..+||++|+||++++|.+|++||++
T Consensus 157 ~~~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 157 DVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred cceeEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 34565666666664322 2122358899999999999998776655432 2467899999999999999999999999
Q ss_pred CEECcCCcc----CCCCccccCCCceeec
Q 037878 1390 AEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1390 a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
|.||++|+| ++++.+ .|+|++...
T Consensus 237 a~IGAgSVV~kdVP~~~~v-~G~PAkiv~ 264 (294)
T PLN02694 237 AKIGAGSVVLIDVPPRTTA-VGNPARLVG 264 (294)
T ss_pred CEECCCCEECCcCCCCcEE-EccCcEEEc
Confidence 999999999 788888 899999874
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.9e-09 Score=109.76 Aligned_cols=98 Identities=23% Similarity=0.292 Sum_probs=67.8
Q ss_pred CEECCCcEECc--cccCCCCceEECCCCEeCCCCEEeecc----ccCCceee------cCEEECCCcEECCCCEECCCCE
Q 037878 1318 AKLGSSVLLDT--VDITDPSLVLIGDGAVISEGALIQSHE----VKNGVLSF------QPIKIARKVSVGPYAVIQKGSV 1385 (2280)
Q Consensus 1318 a~Ig~~v~i~~--~~~~~~~~~~IG~~~~I~~~~~l~~~~----~~~~~~~~------~~i~Ig~~~~iG~~~~i~pg~~ 1385 (2280)
++||+++.|.. ..-.+...+.||++|.|.++|+|.+.. ..++...+ .-++||++|+||++|+|+.|++
T Consensus 30 V~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~ 109 (176)
T COG0663 30 VRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAV 109 (176)
T ss_pred EEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCcE
Confidence 55666666632 223344667777777777777775432 11222211 2278999999999999999999
Q ss_pred ECCCCEECcCCccCCCCccc-----cCCCceeecc
Q 037878 1386 IGEEAEVAPLQKSEGGKPIL-----KSTNANYVQK 1415 (2280)
Q Consensus 1386 ig~~a~ig~~s~v~~~~~~~-----~g~p~~~~~~ 1415 (2280)
||++|+||++|.|+++..++ .|+|++..++
T Consensus 110 IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~ 144 (176)
T COG0663 110 IGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRP 144 (176)
T ss_pred ECCCcEEccCCcccCCcCCCCCeEeecCcceeeec
Confidence 99999999999996655553 4888887643
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-08 Score=115.61 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=45.1
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCC
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHS 1659 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~ 1659 (2280)
++||+||.||++|.|+... .++.- .+++||++|+||.++.| |+.||++|+||+|++|+.+.
T Consensus 225 avIGhds~IG~gasIg~tL-sGg~~--~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagT 285 (341)
T TIGR03536 225 VMVGKGSDLGGGCSTMGTL-SGGGN--IVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGT 285 (341)
T ss_pred CEECCCCEECCCCEEeEEE-eCCCc--eeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCc
Confidence 5566666666666663221 11111 22899999999999999 99999999999999998884
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=115.68 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=80.3
Q ss_pred CCEECCCcEECc-cccCCCCceEECCCCEeCCCCEEeeccc---------c-------CCceeecCEEECCCcEECCCCE
Q 037878 1317 GAKLGSSVLLDT-VDITDPSLVLIGDGAVISEGALIQSHEV---------K-------NGVLSFQPIKIARKVSVGPYAV 1379 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~-~~~~~~~~~~IG~~~~I~~~~~l~~~~~---------~-------~~~~~~~~i~Ig~~~~iG~~~~ 1379 (2280)
..+||++|.|+. ..+.....++||++|.|+++|.|.++.. . ...+..++++||++|+||.+++
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence 578999999965 3444446799999999999999987532 1 1234568999999999999999
Q ss_pred ECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1380 IQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1380 i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
|.+|++||++|+||++|+| ++++.+ .|+||+...
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~-~G~Pa~~ik 182 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTKSIPENTVI-AGNPAKIIK 182 (192)
T ss_pred EcCCCEECCCCEECCCCEECcccCCCcEE-EecCCEEEe
Confidence 9999999999999999999 678777 899998764
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-08 Score=129.51 Aligned_cols=83 Identities=16% Similarity=0.317 Sum_probs=58.7
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeC-------CCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVL-------PNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~-------~g~~ig~ 1645 (2280)
|++||+++.|+..+. .+.+.||+++.+.+.+.+ +.+.||++|.||+++++. .++.||+
T Consensus 338 ~~~i~~~~~ig~~~~---~~~~~ig~~~~~~~~~~i------------g~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~ 402 (459)
T PRK14355 338 GTELSAHVKIGNFVE---TKKIVMGEGSKASHLTYL------------GDATIGRNVNIGCGTITCNYDGVKKHRTVIED 402 (459)
T ss_pred CCEeCCCCEECCCcc---ccCCEECCCceeeeeccc------------cCCEECCCCEEccceeecCcCCccccCcEecC
Confidence 456777777766532 234667777777555544 557899999999988763 3578999
Q ss_pred CcEEccCccccCCCccCCCcEEecC
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
++.||.++.+-.+-.|.+++...+.
T Consensus 403 ~~~ig~~~~i~~~~~ig~~~~i~a~ 427 (459)
T PRK14355 403 DVFVGSDVQFVAPVTVGRNSLIAAG 427 (459)
T ss_pred CeEEcCCCEEeCCcEECCCCEECCC
Confidence 9999999888777667777776443
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.80 E-value=6e-08 Score=107.55 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=54.0
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEcc-C
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGA-L 1652 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~-~ 1652 (2280)
++||+++.|+....+.. +.||+++.|++++.|+ ..+.||++++|+.++.|.++++|+++++++. .
T Consensus 73 v~Ig~~~~Ig~~~~i~~---~~Ig~~v~Ig~~~~Ig-----------~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~p 138 (161)
T cd03359 73 LHIGDYVFIGENCVVNA---AQIGSYVHIGKNCVIG-----------RRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRP 138 (161)
T ss_pred eEECCccEECCCCEEEe---eEEcCCcEECCCCEEc-----------CCCEECCCcEECCCCEECCCCEeCCCCEEeccc
Confidence 46888888877654443 7889999999988885 4568888888888888888888888888875 5
Q ss_pred ccccCC
Q 037878 1653 SVAPMH 1658 (2280)
Q Consensus 1653 s~v~~~ 1658 (2280)
+.+.++
T Consensus 139 a~~i~~ 144 (161)
T cd03359 139 ARFIGE 144 (161)
T ss_pred cEEEEe
Confidence 555554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-08 Score=129.78 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=58.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCCC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSRD 1646 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~~ 1646 (2280)
+.||++|.|+..+.+. .+.||+++.|++.+.+ +.++||++|+||+++++.. +++|||+
T Consensus 332 ~~i~~~~~Ig~~~~i~---~~~ig~~~~i~~~~~i------------~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~ 396 (451)
T TIGR01173 332 SVLGAGVHIGNFVETK---NARIGKGSKAGHLSYL------------GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDG 396 (451)
T ss_pred CEECCCcEEccceeec---CcEECCCcEecceeeE------------eeeEEcCCcEECCCeEEeCcccccCCCCEECCC
Confidence 4555555555543221 3566666666666555 6689999999999998864 6899999
Q ss_pred cEEccCccccCCCccCCCcEEecC
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
+.||.++.+..+-.|.+++...+.
T Consensus 397 ~~ig~~~~i~~~~~ig~~~~i~~g 420 (451)
T TIGR01173 397 VFIGSNTQLVAPVKVGDGATIAAG 420 (451)
T ss_pred cEECCCCEEECCcEECCCCEEccC
Confidence 999999988877667777776543
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.6e-09 Score=110.53 Aligned_cols=95 Identities=24% Similarity=0.294 Sum_probs=68.1
Q ss_pred CCEECCCcEECc-cccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcC
Q 037878 1317 GAKLGSSVLLDT-VDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPL 1395 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~-~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~ 1395 (2280)
+||||++-.++. .-++.-.-..||++|+|..++++++---.-+. -.| .||+||+||++++|.+|++||+|++||+|
T Consensus 154 aa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gd--rhP-~Igd~vliGaGvtILgnV~IGegavIaAG 230 (269)
T KOG4750|consen 154 AAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGD--RHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAG 230 (269)
T ss_pred hhhcccceeeccccceeecceeEeccceeeecceeeccccccccc--cCC-cccCCeEEccccEEeCCeeECCCcEEecc
Confidence 488888888843 22222233455666666666666533211111 124 89999999999999999999999999999
Q ss_pred Ccc----CCCCccccCCCceeecc
Q 037878 1396 QKS----EGGKPILKSTNANYVQK 1415 (2280)
Q Consensus 1396 s~v----~~~~~~~~g~p~~~~~~ 1415 (2280)
|+| |+++.. .|+||+..++
T Consensus 231 svV~kDVP~~~~A-vGnPAklIg~ 253 (269)
T KOG4750|consen 231 SVVLKDVPPNTLA-VGNPAKLIGK 253 (269)
T ss_pred ceEEeccCCCcee-cCCchhhccc
Confidence 999 778777 8999998753
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=116.34 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=65.6
Q ss_pred HcCCEECCCcEECccc-cCCCCceEECCCCEeCCCCEEeeccccCCc---eeecCEEECCCcEECCCCEECCCCEECCCC
Q 037878 1315 MLGAKLGSSVLLDTVD-ITDPSLVLIGDGAVISEGALIQSHEVKNGV---LSFQPIKIARKVSVGPYAVIQKGSVIGEEA 1390 (2280)
Q Consensus 1315 ~lGa~Ig~~v~i~~~~-~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~---~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a 1390 (2280)
.+|..|+.++.|+... +.....+.||++|.||++|.|.....-++. ..-+..+||++|+||++|+|..|++||+|+
T Consensus 203 ~~GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~a 282 (355)
T PLN02739 203 VFGIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGA 282 (355)
T ss_pred HhCcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCC
Confidence 4455555555443221 111224555555555555555432222211 011357899999999999999999999999
Q ss_pred EECcCCcc----CCCCccccCCCceeec
Q 037878 1391 EVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1391 ~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
+||++|+| |+++.+ .|+|++...
T Consensus 283 iIGAGSVV~kDVP~~stv-vG~PAriI~ 309 (355)
T PLN02739 283 MVAAGSLVLKDVPSHSMV-AGNPAKLIG 309 (355)
T ss_pred EECCCCEECCCCCCCcEE-EecCCEEec
Confidence 99999997 888888 899999864
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-09 Score=96.17 Aligned_cols=42 Identities=50% Similarity=0.783 Sum_probs=38.6
Q ss_pred EECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecC
Q 037878 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68 (2280)
Q Consensus 26 IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~ 68 (2280)
|||||+|||+||++|+++|+ +|+|+|+++++||++++.+.++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~g 42 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDRLGGRARSFRIPG 42 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSSSSGGGCEEEETT
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcccCcceeEEEECC
Confidence 89999999999999999998 7999999999999999988754
|
... |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=108.54 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=65.7
Q ss_pred HHHcCCEECCCcEECccc-cC------CCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCE
Q 037878 1313 FEMLGAKLGSSVLLDTVD-IT------DPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSV 1385 (2280)
Q Consensus 1313 ~R~lGa~Ig~~v~i~~~~-~~------~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ 1385 (2280)
....|+.|++++.|+... +. ....++||+||.|+++|.|++.....+ ....+||++|+||++++|..+++
T Consensus 57 ~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~---~~~~~Ig~~v~Ig~~a~I~~~v~ 133 (162)
T TIGR01172 57 RVLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKG---KRHPTVGEGVMIGAGAKVLGNIE 133 (162)
T ss_pred heeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccC---CcCCEECCCcEEcCCCEEECCcE
Confidence 334466766666665322 21 123455666666666666654422111 34568999999999999999999
Q ss_pred ECCCCEECcCCcc----CCCCccccCCCce
Q 037878 1386 IGEEAEVAPLQKS----EGGKPILKSTNAN 1411 (2280)
Q Consensus 1386 ig~~a~ig~~s~v----~~~~~~~~g~p~~ 1411 (2280)
||+++.||++|+| |+++.+ .|+|++
T Consensus 134 IG~~~~Iga~s~V~~dvp~~~~~-~G~Par 162 (162)
T TIGR01172 134 VGENAKIGANSVVLKDVPPGATV-VGVPAR 162 (162)
T ss_pred ECCCCEECCCCEECCCCCCCCEE-EeecCC
Confidence 9999999999998 777777 778764
|
Cysteine biosynthesis |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=104.60 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=78.4
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCce----eecCEEECCCcEECCCCEECCCCEECCCCEE
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVL----SFQPIKIARKVSVGPYAVIQKGSVIGEEAEV 1392 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~----~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~i 1392 (2280)
++.||+++.|++.... ....+||++|.|++++.+.+..+.+... .+++++||++|+||++++|.+|++||+++.|
T Consensus 16 ~~~Ig~~~~I~~~~~i-~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i 94 (119)
T cd03358 16 DVKIGDNVKIQSNVSI-YEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALV 94 (119)
T ss_pred CcEECCCcEECCCcEE-eCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEECCCCEE
Confidence 4778888888654432 3568899999999999998776665554 5899999999999999999999999999999
Q ss_pred CcCCcc----CCCCccccCCCceee
Q 037878 1393 APLQKS----EGGKPILKSTNANYV 1413 (2280)
Q Consensus 1393 g~~s~v----~~~~~~~~g~p~~~~ 1413 (2280)
++++.+ ++++.| .|+|++..
T Consensus 95 ~~~~~v~~~i~~~~~~-~G~pa~~~ 118 (119)
T cd03358 95 GAGAVVTKDVPPYALV-VGNPARII 118 (119)
T ss_pred ccCCEEeCcCCCCeEE-ecCcceec
Confidence 999988 667777 78998753
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-08 Score=126.98 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=54.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCCC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSRD 1646 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~~ 1646 (2280)
+.||+++.|+..+.+. .+.||+++.+++.+.+ +.++||++|+||+++++.. +++|||+
T Consensus 336 ~~i~~~~~ig~~~~i~---~~~i~~~~~~~~~~~~------------g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~ 400 (456)
T PRK09451 336 AELAEGAHVGNFVEMK---KARLGKGSKAGHLTYL------------GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDD 400 (456)
T ss_pred CEECCCceeccceeee---ceeeCCCCccCccccc------------cccEECCCCEEcCCeEEecccCcccCCCEECCC
Confidence 3444444444432221 2566777776665555 6679999999999987742 4789999
Q ss_pred cEEccCccccCCCccCCCcEEecC
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
+.||.+|.+..+-.|.++++..+.
T Consensus 401 ~~ig~~~~i~~~~~ig~~~~i~~g 424 (456)
T PRK09451 401 VFVGSDTQLVAPVTVGKGATIGAG 424 (456)
T ss_pred cEECCCCEEeCCcEECCCCEECCC
Confidence 999999988776556666665443
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-08 Score=119.67 Aligned_cols=94 Identities=21% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCEECCCcEECcc-ccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcC
Q 037878 1317 GAKLGSSVLLDTV-DITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPL 1395 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~-~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~ 1395 (2280)
+++||+|+.|+.. .+.....++||++|.|..+|+|++.....+ .+.++||++|+||+++.|..|++||+++.||++
T Consensus 232 ~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g---~~~piIGd~V~IGagA~IlggV~IGdga~IGAg 308 (360)
T PLN02357 232 GAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSG---DRHPKIGDGVLIGAGTCILGNITIGEGAKIGAG 308 (360)
T ss_pred CCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCC---ccCceeCCCeEECCceEEECCeEECCCCEECCC
Confidence 3556666666421 111223345555555555555554322111 356899999999999999999999999999999
Q ss_pred Ccc----CCCCccccCCCceeec
Q 037878 1396 QKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1396 s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
|+| ++++.+ .|+|++...
T Consensus 309 SVV~~dVP~~~~v-~G~PArvv~ 330 (360)
T PLN02357 309 SVVLKDVPPRTTA-VGNPARLIG 330 (360)
T ss_pred CEECcccCCCcEE-ECCCeEEEc
Confidence 998 778887 799999873
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-07 Score=109.46 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=53.0
Q ss_pred ccCCeEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 176 SMAGKIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 176 ~~~~~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
...+.|..+.||+..+.+++++.+ |.+|.+++.|.+|..++++ .+.|+..+| +.++++.||++
T Consensus 251 ~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gk-a~GV~L~dG--~ev~sk~VvSN 316 (561)
T KOG4254|consen 251 GHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGK-AVGVRLADG--TEVRSKIVVSN 316 (561)
T ss_pred ccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCe-EEEEEecCC--cEEEeeeeecC
Confidence 346778889999999999998654 8999999999999988755 478888999 57888777776
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=104.31 Aligned_cols=63 Identities=13% Similarity=0.242 Sum_probs=49.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
+.||+++.|+....+. .+.||++|+|+.++.|. ..++||++++||+++++.++..|++++++.
T Consensus 62 ~~Ig~~~~Ig~~~~i~---~~~Ig~~~~Ig~~~~I~-----------~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~ 124 (155)
T cd04745 62 TVLEENGHIGHGAILH---GCTIGRNALVGMNAVVM-----------DGAVIGEESIVGAMAFVKAGTVIPPRSLIA 124 (155)
T ss_pred eEEcCCCEECCCcEEE---CCEECCCCEECCCCEEe-----------CCCEECCCCEECCCCEeCCCCEeCCCCEEe
Confidence 3466666666543332 37899999999998884 446899999999999999999999998874
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=107.19 Aligned_cols=62 Identities=8% Similarity=0.150 Sum_probs=48.3
Q ss_pred eeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
.||+++.|+..+.+. .+.||++|+|+.++.+. ..++||++|+||.++.|.+++.|++++++.
T Consensus 71 iIg~~~~Ig~~a~I~---~siIg~~~~IG~ga~I~-----------~g~~IG~~s~Vgags~V~~~~~ip~~~l~~ 132 (192)
T TIGR02287 71 VVEENGHVGHGAILH---GCIVGRNALVGMNAVVM-----------DGAVIGENSIVAASAFVKAGAEMPAQYLVV 132 (192)
T ss_pred eECCCCEECCCCEEc---CCEECCCCEECCCcccC-----------CCeEECCCCEEcCCCEECCCCEECCCeEEE
Confidence 466666666654333 27888888888888773 446899999999999999999999998865
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=109.57 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=50.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
+.||++|.|+..+.+. .++||++|.||.+|.|. ..++||++|.||.++++.+|.+|+++.++.
T Consensus 127 tvIG~~v~IG~~s~L~---~~~Igd~v~IG~~svI~-----------~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~ 189 (246)
T PLN02472 127 TLIDRYVTIGAYSLLR---SCTIEPECIIGQHSILM-----------EGSLVETHSILEAGSVLPPGRRIPTGELWA 189 (246)
T ss_pred cEECCCCEECCCcEEC---CeEEcCCCEECCCCEEC-----------CCCEECCCCEECCCCEECCCCEeCCCCEEE
Confidence 4678888887765443 48999999999998885 456899999999999999998888888876
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=103.55 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=55.9
Q ss_pred eeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE-ccCc
Q 037878 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL-GALS 1653 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v-g~~s 1653 (2280)
.||+++.|+..+.+.. +.||++++|+.++.+. +.++||++|+||.++.+.++++|++++++ |..+
T Consensus 62 ~Ig~~~~I~~~~~i~~---~~Ig~~~~Ig~~~~v~-----------~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~ 127 (153)
T cd04645 62 IIGDNVTVGHGAVLHG---CTIGDNCLIGMGAIIL-----------DGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPA 127 (153)
T ss_pred EEcCCcEECCCcEEee---eEECCCCEECCCCEEc-----------CCCEECCCCEECCCCEECCCCEeCCCCEEeCCcc
Confidence 4666666665543432 7899999999998884 45789999999999999999999999999 6666
Q ss_pred cccCC
Q 037878 1654 VAPMH 1658 (2280)
Q Consensus 1654 ~v~~~ 1658 (2280)
.+.++
T Consensus 128 ~~~~~ 132 (153)
T cd04645 128 KVVRE 132 (153)
T ss_pred hhccc
Confidence 66666
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=106.78 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=23.7
Q ss_pred eCeEECCCcEEccCCeeC-------CCcEeCCCcEEccCccccCCCccCCCcEE
Q 037878 1621 GKVEVQDNSVIGSQSLVL-------PNSVVSRDVILGALSVAPMHSVLQRGGIY 1667 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~-------~g~~ig~~~~vg~~s~v~~~~~v~~~~~~ 1667 (2280)
+.+.||++|.||.++++. .++.|||++.||.++.+..+-.+.+++..
T Consensus 118 ~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i 171 (193)
T cd03353 118 GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATI 171 (193)
T ss_pred cccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEE
Confidence 345566666666655442 24455555555555554443334444433
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=102.68 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=54.8
Q ss_pred eeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcE-EccCc
Q 037878 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVI-LGALS 1653 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~-vg~~s 1653 (2280)
.||+++.|+..+.+. .+.||++|.|+.++.+. ..++||+++++|.++.+.+|..|+++++ .|..+
T Consensus 63 ~Ig~~~~I~~~~~i~---~~~Ig~~~~Ig~~~~i~-----------~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa 128 (154)
T cd04650 63 EIGDYVTIGHNAVVH---GAKVGNYVIVGMGAILL-----------NGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPA 128 (154)
T ss_pred EECCCCEECCCcEEE---CcEECCCCEEcCCCEEe-----------CCCEECCCCEECCCCEECCCcEeCCCCEEeccCc
Confidence 456666665544332 26899999999998884 4568999999999999999999999999 66767
Q ss_pred cccCC
Q 037878 1654 VAPMH 1658 (2280)
Q Consensus 1654 ~v~~~ 1658 (2280)
.+.++
T Consensus 129 ~~~~~ 133 (154)
T cd04650 129 KVVRK 133 (154)
T ss_pred eEecc
Confidence 77666
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=125.12 Aligned_cols=62 Identities=16% Similarity=0.374 Sum_probs=37.7
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCee-------CCCcEeCCCcEEccCccccCCCccCCCcE
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLV-------LPNSVVSRDVILGALSVAPMHSVLQRGGI 1666 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v-------~~g~~ig~~~~vg~~s~v~~~~~v~~~~~ 1666 (2280)
+.|++++.+++++.+ +.+.||+++.||.+++. ..+++|||++.+|+++.+..+-.|.++++
T Consensus 357 ~~i~~~~~i~~~~~i------------g~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~ 424 (456)
T PRK14356 357 AVLGKGAKANHLTYL------------GDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGAL 424 (456)
T ss_pred eEecCCcEecccccc------------cCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCE
Confidence 345555555555444 56678888888777654 13467777777777777665544444444
Q ss_pred E
Q 037878 1667 Y 1667 (2280)
Q Consensus 1667 ~ 1667 (2280)
.
T Consensus 425 i 425 (456)
T PRK14356 425 V 425 (456)
T ss_pred E
Confidence 4
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-08 Score=103.33 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=66.8
Q ss_pred CEECCCcEECcc-ccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCC
Q 037878 1318 AKLGSSVLLDTV-DITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQ 1396 (2280)
Q Consensus 1318 a~Ig~~v~i~~~-~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s 1396 (2280)
|+||+++.|+.. .......++|||+|.|+++|.|+.+. ....+.++||++|+||+++++.++++||+++.||++|
T Consensus 48 a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~----~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags 123 (146)
T PRK10191 48 ATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG----ADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGS 123 (146)
T ss_pred CEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCC----cCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCC
Confidence 566666666431 22234456778888888777776442 2234677999999999999999999999999999999
Q ss_pred cc----CCCCccccCCCcee
Q 037878 1397 KS----EGGKPILKSTNANY 1412 (2280)
Q Consensus 1397 ~v----~~~~~~~~g~p~~~ 1412 (2280)
+| +++..+ .|.|++.
T Consensus 124 ~V~~dv~~~~~v-~G~pA~~ 142 (146)
T PRK10191 124 VVLDSVPDNALV-VGEKARV 142 (146)
T ss_pred EECCccCCCcEE-EccCcEE
Confidence 98 556666 6788864
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-08 Score=106.51 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=67.0
Q ss_pred eeCCCceeccCCccc-----CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1575 KIGRYCSIRAINPVS-----CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~-----~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.||+++.|...+++. ....+.||||+.|=..+.|+ ..|+||++|.+.|++++..+++|||.++|
T Consensus 83 ~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVA-----------HDC~iGn~~ilaNnatLAGHV~igD~aii 151 (260)
T COG1043 83 IIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVA-----------HDCVIGNNCILANNATLAGHVEVGDYAII 151 (260)
T ss_pred EECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeee-----------ccceecCcEEEecCCeEeccEEECCEEEE
Confidence 588888886654443 23578888887776666664 66899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
|.+|.|-.=-+|-+.+...|--
T Consensus 152 GG~saVHQFvrIG~~amiGg~S 173 (260)
T COG1043 152 GGLSAVHQFVRIGAHAMIGGLS 173 (260)
T ss_pred cCcceEEEEEEEcchheecccc
Confidence 9999997654466777766654
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=123.20 Aligned_cols=45 Identities=27% Similarity=0.478 Sum_probs=40.8
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
+++..++|+|||||+|||+||.+|+++|+ +|+||||++.+||...
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFEREKQVGGLWV 50 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCCCCcceee
Confidence 45567899999999999999999999999 6999999999999664
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=123.76 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=44.7
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCCC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSRD 1646 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~~ 1646 (2280)
+.||+++.++..+.+ ..+.||+++.|++.+.+ +.+.||++|+||.++++.. ++.||++
T Consensus 341 ~vIg~~~~ig~~~~~---~~~~I~~~~~i~~~~~i------------~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~ 405 (482)
T PRK14352 341 TVLGEEGKLGAFVET---KNATIGRGTKVPHLTYV------------GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSH 405 (482)
T ss_pred cEEcCCCEECCcEEE---cccEECCCcEEccCcee------------cccEECCCcEECCCcEEeccccccCCCCeECCC
Confidence 455555555543211 12445555555444433 4556777777777766652 3667777
Q ss_pred cEEccCccccCCCccCCCcEE
Q 037878 1647 VILGALSVAPMHSVLQRGGIY 1667 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~ 1667 (2280)
+.||.++.+..+-.|.+++..
T Consensus 406 ~~iG~~~~i~~~~~Ig~~~~i 426 (482)
T PRK14352 406 VRTGSDTMFVAPVTVGDGAYT 426 (482)
T ss_pred cEECCCCEEeCCCEECCCcEE
Confidence 777777776665555555443
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=123.64 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=36.4
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCee-------CCCcEeCCCcEEccCccccCCCccCCCcE
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLV-------LPNSVVSRDVILGALSVAPMHSVLQRGGI 1666 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v-------~~g~~ig~~~~vg~~s~v~~~~~v~~~~~ 1666 (2280)
+.|++++.+++++.+ +.+.||++|.||+++++ ..++.||+++.||+++++..+-.|.++++
T Consensus 339 ~~i~~~~~i~~~~~i------------~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ 406 (446)
T PRK14353 339 AKLGEGAKVNHLTYI------------GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAY 406 (446)
T ss_pred eEECCCCEECCeeEE------------cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCE
Confidence 455555555555444 33456666666666655 33566666666666666666555566555
Q ss_pred E
Q 037878 1667 Y 1667 (2280)
Q Consensus 1667 ~ 1667 (2280)
.
T Consensus 407 i 407 (446)
T PRK14353 407 I 407 (446)
T ss_pred E
Confidence 5
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=105.69 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=48.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
+.||+++.|+..+.+. .+.||++|+||.++.+. ..++||+++.||++++|.+++.+++++++.
T Consensus 72 siIg~~~~Ig~~a~i~---g~vIG~~v~IG~ga~V~-----------~g~~IG~~s~Vgags~V~~~~~ip~~~~~~ 134 (196)
T PRK13627 72 TIVGENGHIGHGAILH---GCVIGRDALVGMNSVIM-----------DGAVIGEESIVAAMSFVKAGFQGEKRQLLM 134 (196)
T ss_pred CEECCCCEECCCcEEe---eEEECCCCEECcCCccC-----------CCcEECCCCEEcCCCEEeCCcCcCCCcEEE
Confidence 3566666666654332 37899999999988874 446899999999999999999998887664
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-07 Score=100.80 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=60.5
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|...+. ..+.++||++|+|+.++.|+.... ....++++||++|+||.+++|.+|++||++++||++|
T Consensus 32 ~~IG~~~~I~~~~~--I~~~~~IG~~~~I~~~~~igg~~~---~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 32 AYVDEGTMVDSWAT--VGSCAQIGKNVHLSAGAVIGGVLE---PLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred CEECCCeEEcCCCE--ECCCCEECCCCEECCCCEECCccc---ccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCC
Confidence 34555555544321 122366777777777777643211 1234678999999999999999999999999999999
Q ss_pred cccCCCccCCC
Q 037878 1654 VAPMHSVLQRG 1664 (2280)
Q Consensus 1654 ~v~~~~~v~~~ 1664 (2280)
.|.++..+.++
T Consensus 107 ~V~~~~~I~~~ 117 (139)
T cd03350 107 VLTQSTPIYDR 117 (139)
T ss_pred EEcCCeEeccc
Confidence 99988555554
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-07 Score=122.39 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=33.2
Q ss_pred eCeEECCCcEEccCCeeCC-------CcEeCCCcEEccCccccCCCccCCCcEE
Q 037878 1621 GKVEVQDNSVIGSQSLVLP-------NSVVSRDVILGALSVAPMHSVLQRGGIY 1667 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~~-------g~~ig~~~~vg~~s~v~~~~~v~~~~~~ 1667 (2280)
+.+.||++|+||+++++.. +++||+++.||++|++..+-.+.++++.
T Consensus 364 ~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v 417 (450)
T PRK14360 364 GDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTV 417 (450)
T ss_pred CCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEE
Confidence 5667888888888777643 6777777777777777766555665554
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=91.43 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=66.4
Q ss_pred CEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCc
Q 037878 1318 AKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQK 1397 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~ 1397 (2280)
++||+++.|++.... .+.+.||++|.|++++.|.++.... ...+++||++|+||.+++|.++++||+++.|+++|.
T Consensus 1 ~~ig~~~~i~~~~~i-~~~~~Ig~~~~I~~~~~i~~~~~~~---~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~ 76 (78)
T cd00208 1 VFIGEGVKIHPKAVI-RGPVVIGDNVNIGPGAVIGAATGPN---EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAV 76 (78)
T ss_pred CEECCCeEECCCCEE-eCcEEECCCCEECCCCEEEeccCCC---ccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcE
Confidence 578999999764432 3479999999999999999887543 567899999999999999999999999999999987
Q ss_pred c
Q 037878 1398 S 1398 (2280)
Q Consensus 1398 v 1398 (2280)
|
T Consensus 77 v 77 (78)
T cd00208 77 V 77 (78)
T ss_pred e
Confidence 5
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-07 Score=116.53 Aligned_cols=46 Identities=41% Similarity=0.676 Sum_probs=43.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~ 68 (2280)
++|+|+|||+|||+||++|+++|+ +|||+|+++++||++.+++..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~~GGk~~s~~~~d 46 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDRLGGKVASWRDSD 46 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCccCceeeeeecCC
Confidence 589999999999999999999999 6999999999999999998543
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=95.30 Aligned_cols=94 Identities=23% Similarity=0.298 Sum_probs=76.2
Q ss_pred CEECCCcEECccc-cCCCCceEECCCCEeCCCCEEeeccc--cC------CceeecCEEECCCcEECCCCEECCCCEECC
Q 037878 1318 AKLGSSVLLDTVD-ITDPSLVLIGDGAVISEGALIQSHEV--KN------GVLSFQPIKIARKVSVGPYAVIQKGSVIGE 1388 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~-~~~~~~~~IG~~~~I~~~~~l~~~~~--~~------~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~ 1388 (2280)
.+||+++.|.... +...+.++||++|.|+++|.|.+... .. .....++++||++|+||.++++.+++.||+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 5789999997643 43335899999999999999986532 11 135578999999999999999999999999
Q ss_pred CCEECcCCcc----CCCCccccCCCcee
Q 037878 1389 EAEVAPLQKS----EGGKPILKSTNANY 1412 (2280)
Q Consensus 1389 ~a~ig~~s~v----~~~~~~~~g~p~~~ 1412 (2280)
++.|++++.| ++++.+ .|+||+.
T Consensus 82 ~~~i~~~~~v~~~i~~~~i~-~g~pa~~ 108 (109)
T cd04647 82 GAVVGAGSVVTKDVPPNSIV-AGNPAKV 108 (109)
T ss_pred CCEECCCCEEeeECCCCCEE-EccccEe
Confidence 9999999998 567776 6788763
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.3e-07 Score=105.85 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=37.6
Q ss_pred HHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcC
Q 037878 189 TSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISG 242 (2280)
Q Consensus 189 ~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~ 242 (2280)
.+.++.++++.+.+++++++|++|++++++| .+++.++ ++++||+||+|+
T Consensus 85 ~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w--~v~~~~~--~~~~a~~VVlAt 134 (203)
T PF13738_consen 85 LDYLQEYAERFGLEIRFNTRVESVRRDGDGW--TVTTRDG--RTIRADRVVLAT 134 (203)
T ss_dssp HHHHHHHHHHTTGGEETS--EEEEEEETTTE--EEEETTS---EEEEEEEEE--
T ss_pred HHHHHHHHhhcCcccccCCEEEEEEEeccEE--EEEEEec--ceeeeeeEEEee
Confidence 3467788888888899999999999999888 4556677 578999999983
|
... |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.1e-07 Score=98.72 Aligned_cols=53 Identities=32% Similarity=0.571 Sum_probs=43.4
Q ss_pred ceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCccC
Q 037878 1336 LVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSE 1399 (2280)
Q Consensus 1336 ~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v~ 1399 (2280)
.+.||+++.|++++.|. +++.||++|.|++++.|.+++.||+++.|++++.+.
T Consensus 17 ~v~ig~~~~I~~~a~i~-----------~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~ 69 (163)
T cd05636 17 PVWIGEGAIVRSGAYIE-----------GPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK 69 (163)
T ss_pred CeEEcCCCEECCCCEEe-----------CCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe
Confidence 46688888888888776 356699999999999999889999999998887764
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.4e-07 Score=118.92 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=57.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCCC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSRD 1646 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~~ 1646 (2280)
+.||++|.|+..+.+. .+.||+++.+++.+.+ +.++||++|.||.++.+.. +++|||+
T Consensus 335 ~~Ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~~------------~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~ 399 (458)
T PRK14354 335 SVIGEEVKIGNFVEIK---KSTIGEGTKVSHLTYI------------GDAEVGENVNIGCGTITVNYDGKNKFKTIIGDN 399 (458)
T ss_pred CEEeCCcEECCceEEe---eeEECCCCEecceeee------------cCcccCCceEEcCceeecccccccccCCEECCC
Confidence 3455555555443222 2556666666666554 6689999999999988754 6899999
Q ss_pred cEEccCccccCCCccCCCcEEec
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIG 1669 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G 1669 (2280)
+.+|.+|.+..+..|.++++...
T Consensus 400 ~~ig~~s~i~~~~~ig~~~~v~~ 422 (458)
T PRK14354 400 AFIGCNSNLVAPVTVGDNAYIAA 422 (458)
T ss_pred cEEccCCEEeCCcEECCCCEECC
Confidence 99999999887766777777643
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-07 Score=119.41 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=39.3
Q ss_pred eCeEECCCcEEccCCeeC-------CCcEeCCCcEEccCccccCCCccCCCcEEecC
Q 037878 1621 GKVEVQDNSVIGSQSLVL-------PNSVVSRDVILGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~-------~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
+.++||++|.||+++++. .+++|||++.||.++.|..+-.|.+++...+.
T Consensus 357 ~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag 413 (448)
T PRK14357 357 GDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAG 413 (448)
T ss_pred cCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCC
Confidence 567899999999988764 36889999999999988877666777666544
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-07 Score=88.23 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=69.1
Q ss_pred CeeeccCcEEEccceeeecCceeEEecCceEECCCceEeeecccCCCcceEeeeEEEccCeEEccceeEcCCcEeCCCce
Q 037878 2185 AEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFGHIYEGDGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENGGS 2264 (2280)
Q Consensus 2185 ~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 2264 (2280)
++|| +++.++..+.+.. .+.|| +++.|+++|.+..+... + ...+++||++++||.+|++.++++||++++
T Consensus 1 ~~ig--~~~~i~~~~~i~~--~~~Ig-~~~~I~~~~~i~~~~~~--~---~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~ 70 (78)
T cd00208 1 VFIG--EGVKIHPKAVIRG--PVVIG-DNVNIGPGAVIGAATGP--N---EKNPTIIGDNVEIGANAVIHGGVKIGDNAV 70 (78)
T ss_pred CEEC--CCeEECCCCEEeC--cEEEC-CCCEECCCCEEEeccCC--C---ccCCcEECCCcEECCCCEEeCCCEECCCCE
Confidence 4677 9999999877744 79999 99999999999998765 2 568899999999999999999999999999
Q ss_pred ecccceee
Q 037878 2265 LSSLSLAM 2272 (2280)
Q Consensus 2265 ~~~~s~~~ 2272 (2280)
|+++|+++
T Consensus 71 i~~~s~v~ 78 (78)
T cd00208 71 IGAGAVVT 78 (78)
T ss_pred ECcCcEeC
Confidence 99999875
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-07 Score=105.70 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=54.5
Q ss_pred cCCeeCCCceeccCCccc--------------CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCee
Q 037878 1572 LGAKIGRYCSIRAINPVS--------------CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLV 1637 (2280)
Q Consensus 1572 lG~~IG~~~~i~~~~~~~--------------~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v 1637 (2280)
+||.||+++.|.....+. +.|.+.|||+|+|+.++.|++.. .++ ...+++||++||||.+|.|
T Consensus 164 lGAyLGeGtvVm~~a~VN~nAgtIG~~iI~g~I~HdvvIGd~~~IgpGvsI~G~L-sGg--~~~pV~IGe~~~IGagA~I 240 (319)
T TIGR03535 164 LGAHLAEGTTVMHEGFVNFNAGTLGASMVEGRISAGVVVGDGSDIGGGASIMGTL-SGG--GKEVISIGERCLLGANSGL 240 (319)
T ss_pred eccEECCCCEEcCCCEEccCceEecCceEEEEEccCCEECCCCEECCCceeccee-cCC--CcccEEECCCcEECCCCEE
Confidence 467777766665433221 13344444444444444442111 111 1245999999999999999
Q ss_pred CCCcEeCCCcEEccCccccCCC
Q 037878 1638 LPNSVVSRDVILGALSVAPMHS 1659 (2280)
Q Consensus 1638 ~~g~~ig~~~~vg~~s~v~~~~ 1659 (2280)
|+.||++|+||+|++|+++.
T Consensus 241 --GI~IGd~~VVGAGaVVtkgT 260 (319)
T TIGR03535 241 --GISLGDDCVVEAGLYVTAGT 260 (319)
T ss_pred --CeEECCCCEECCCCEEeCCe
Confidence 99999999999999999984
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-07 Score=115.61 Aligned_cols=45 Identities=38% Similarity=0.461 Sum_probs=41.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~ 67 (2280)
.||+|||||+|||++|++|++.|. +|+|+|+++++||.|.+...+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~iGG~~~~~~~~ 46 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNHIGGNCYDEVDE 46 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCCceeeecCC
Confidence 589999999999999999999998 699999999999999886543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-07 Score=105.27 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=64.6
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCc------eee---------cCEEECCCcEECCCCEEC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGV------LSF---------QPIKIARKVSVGPYAVIQ 1381 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~------~~~---------~~i~Ig~~~~iG~~~~i~ 1381 (2280)
++.||+++.|....... ..+.||++|.|++++.|.+...-++. ..+ +.+.||++|+||++++|.
T Consensus 98 ~v~IG~~~~I~~~~~I~-~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~ 176 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVIN-IGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL 176 (231)
T ss_pred CeEECCCCEEecCcccC-CCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEc
Confidence 35555555554322211 23455665555555555322221111 112 368999999999999999
Q ss_pred CCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1382 KGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1382 pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
+|++||+++.|+++|+| ++++.+ .|+||+...
T Consensus 177 ~g~~Ig~~~~IgagsvV~~di~~~~vv-~G~PA~~i~ 212 (231)
T TIGR03532 177 EGVRVGKGAVVAAGAIVTEDVPPNTVV-AGVPAKVIK 212 (231)
T ss_pred CCCEECCCCEECCCCEEccccCCCcEE-EecCCEEec
Confidence 99999999999999998 677777 899999874
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=111.53 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=43.6
Q ss_pred eEEEEcCC---HHHHHHHHHh---HCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 180 KIRRFKGG---YTSLWQKLSK---YLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 180 ~~~~~~gG---~~~l~~~la~---~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
.++...+| ...+.+.+.+ +.|++|+.+++|++|..+++++ ..|++++| + +++|+||+|
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~gv~~~~g--~-i~ad~vV~a 198 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRV-TGVRTSDG--E-IRADRVVLA 198 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEE-EEEEETTE--E-EEECEEEE-
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhccccc-cccccccc--c-cccceeEec
Confidence 44455555 5667777664 4589999999999999999865 23888888 4 999999998
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.5e-07 Score=115.63 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCeeCCCceeccCCcccC-----CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCc
Q 037878 1573 GAKIGRYCSIRAINPVSC-----PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDV 1647 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~-----~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~ 1647 (2280)
.+.||++|.|+..+.+.. .+.++|||+|+||.++.|. ..++||++++||++++|..+ |.+++
T Consensus 342 d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~-----------~~~~ig~~~~i~~g~~v~~~--v~~~~ 408 (430)
T PRK14359 342 DCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLV-----------APVNIEDNVLIAAGSTVTKD--VPKGS 408 (430)
T ss_pred CCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEe-----------CCcEECCCCEECCCCEEccc--cCCCc
Confidence 467888888887643321 2358999999999999885 67899999999999999975 57777
Q ss_pred EEccCcc
Q 037878 1648 ILGALSV 1654 (2280)
Q Consensus 1648 ~vg~~s~ 1654 (2280)
++..++-
T Consensus 409 ~~~~~~~ 415 (430)
T PRK14359 409 LAISRAP 415 (430)
T ss_pred EEEeccC
Confidence 6654443
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-07 Score=93.96 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=52.9
Q ss_pred ceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCccCCCCcccc
Q 037878 1336 LVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSEGGKPILK 1406 (2280)
Q Consensus 1336 ~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v~~~~~~~~ 1406 (2280)
.++||++|.|+++|.|... +.+ ..-.|+.||++|+||++|+| |++||++++||++++|..+++++.
T Consensus 47 ~a~Ighd~~IG~~~~I~~~-l~G--~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~~ 112 (147)
T cd04649 47 GVIVGKGSDVGGGASIMGT-LSG--GGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKVTL 112 (147)
T ss_pred CEEECCCCEECCCCEEEEE-CCC--CcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEEEE
Confidence 3667777777777777722 222 24567999999999999999 899999999999999988887743
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=91.53 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=58.8
Q ss_pred CCEECCCcEECccc-cCCCCceEECCCCEeCCCCEEeeccccC-Cce--eecCEEECCCcEECCCCEECCCCEECCCCEE
Q 037878 1317 GAKLGSSVLLDTVD-ITDPSLVLIGDGAVISEGALIQSHEVKN-GVL--SFQPIKIARKVSVGPYAVIQKGSVIGEEAEV 1392 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~-~~~~~~~~IG~~~~I~~~~~l~~~~~~~-~~~--~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~i 1392 (2280)
|+.|++++.|+... +..+..+.||+++.|+++|.|.....-+ +.. ..+++.||++|+||.++.+.++++||+++.|
T Consensus 2 ~~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i 81 (101)
T cd03354 2 GIDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKI 81 (101)
T ss_pred ceEeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEE
Confidence 44455555554322 2112234455555555555554333222 222 4788999999999999999999999999999
Q ss_pred CcCCcc----CCCCccccCCC
Q 037878 1393 APLQKS----EGGKPILKSTN 1409 (2280)
Q Consensus 1393 g~~s~v----~~~~~~~~g~p 1409 (2280)
++++.| +++..+ .|+|
T Consensus 82 ~~~~~i~~~~~~~~~~-~G~P 101 (101)
T cd03354 82 GANAVVTKDVPANSTV-VGVP 101 (101)
T ss_pred CCCCEECcccCCCCEE-EeCC
Confidence 999998 444444 4544
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=109.80 Aligned_cols=43 Identities=37% Similarity=0.533 Sum_probs=39.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC--CCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G--~~~VtVlEk~~riGG~~~t 63 (2280)
+++||+|||||+.|+++|+.|++.+ . +|+|+||.+.+|-..++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDL-SVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccCcccccccc
Confidence 4689999999999999999999998 7 69999999999986665
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.7e-07 Score=104.55 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=62.1
Q ss_pred cCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEcc
Q 037878 1572 LGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGA 1651 (2280)
Q Consensus 1572 lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~ 1651 (2280)
.|+.||+++.|+..+ ...+.+.||++|+|+.++.|.+... .....+++||++|+||.++.|.+|++||++|+||+
T Consensus 131 iGa~Ig~gt~I~~~a--~IG~~a~IG~nv~I~~gv~I~g~~~---~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIga 205 (272)
T PRK11830 131 IGAYVDEGTMVDTWA--TVGSCAQIGKNVHLSGGVGIGGVLE---PLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGM 205 (272)
T ss_pred CCCEECCCcEEcccc--EECCCCEECCCcEECCCccCCCCcc---ccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcC
Confidence 378899999998762 2223345555555555554432110 11335799999999999999999999999999999
Q ss_pred CccccCCCccC
Q 037878 1652 LSVAPMHSVLQ 1662 (2280)
Q Consensus 1652 ~s~v~~~~~v~ 1662 (2280)
+++|.++..+-
T Consensus 206 g~vV~~gt~I~ 216 (272)
T PRK11830 206 GVFLGQSTKIY 216 (272)
T ss_pred CCEEcCCeEEC
Confidence 99999885443
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-07 Score=102.99 Aligned_cols=92 Identities=24% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceee-------cCEEECCCcEECCCCEECCCCEECCC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF-------QPIKIARKVSVGPYAVIQKGSVIGEE 1389 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~-------~~i~Ig~~~~iG~~~~i~pg~~ig~~ 1389 (2280)
+++||+++.|++.... ...++||++|.|++++.|......++...+ +.++||++|+||++++|.+|++||++
T Consensus 99 ~~~ig~~~~i~~~~~i-~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~ 177 (201)
T TIGR03570 99 SASIGEGTVIMAGAVI-NPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAG 177 (201)
T ss_pred CCEECCCCEECCCCEE-CCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCC
Confidence 4677777777643332 235778888888877777654444433333 37899999999999999999999999
Q ss_pred CEECcCCcc----CCCCccccCCCc
Q 037878 1390 AEVAPLQKS----EGGKPILKSTNA 1410 (2280)
Q Consensus 1390 a~ig~~s~v----~~~~~~~~g~p~ 1410 (2280)
++|+++|+| ++++.| .|+||
T Consensus 178 ~~i~~~~~v~~~~~~~~~~-~g~pa 201 (201)
T TIGR03570 178 AIVGAGAVVTKDIPDGGVV-VGVPA 201 (201)
T ss_pred CEECCCCEECCcCCCCCEE-EeccC
Confidence 999999997 667777 77775
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.5e-07 Score=102.03 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=57.9
Q ss_pred HcCCEECCCcEECccccCCCC---------------ceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCE
Q 037878 1315 MLGAKLGSSVLLDTVDITDPS---------------LVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAV 1379 (2280)
Q Consensus 1315 ~lGa~Ig~~v~i~~~~~~~~~---------------~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~ 1379 (2280)
.+||.||+++.|....+..++ .+.|||+|.|++++.|.|-. .++ .-.||+||++|+||++|.
T Consensus 163 RlGAyLGeGtvVm~~a~VN~nAgtIG~~iI~g~I~HdvvIGd~~~IgpGvsI~G~L-sGg--~~~pV~IGe~~~IGagA~ 239 (319)
T TIGR03535 163 RLGAHLAEGTTVMHEGFVNFNAGTLGASMVEGRISAGVVVGDGSDIGGGASIMGTL-SGG--GKEVISIGERCLLGANSG 239 (319)
T ss_pred eeccEECCCCEEcCCCEEccCceEecCceEEEEEccCCEECCCCEECCCceeccee-cCC--CcccEEECCCcEECCCCE
Confidence 478888888888432221111 23344555555555443321 111 023699999999999999
Q ss_pred ECCCCEECCCCEECcCCccCCCCccc
Q 037878 1380 IQKGSVIGEEAEVAPLQKSEGGKPIL 1405 (2280)
Q Consensus 1380 i~pg~~ig~~a~ig~~s~v~~~~~~~ 1405 (2280)
| |..||++|+||+|++|-.++++.
T Consensus 240 I--GI~IGd~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 240 L--GISLGDDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred E--CeEECCCCEECCCCEEeCCeEEE
Confidence 9 99999999999999998888873
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-05 Score=96.37 Aligned_cols=233 Identities=20% Similarity=0.238 Sum_probs=131.8
Q ss_pred CCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHc---CCCCC--cEEEEEcCchhhhh----HHHHHHHHHHccc
Q 037878 633 QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY---KSTSK--TVLVSWLPQYHDMG----LIGGLFTAMVGGS 703 (2280)
Q Consensus 633 ~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~---~~~~~--d~~l~~~pl~h~~g----l~~~i~~~L~~G~ 703 (2280)
.++++..++-||||||.|-=+.+.+..+..........+ ..... -.++...|-..... ........+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 346677888999999998656666655555544433332 22222 12333334322111 1112222333444
Q ss_pred eEEEeCccccccCHHHHHHHH----hhcceeeecCcHHHHHHHHHHHhcccccccccCCC-CccEEEEec------CCCC
Q 037878 704 TAILFSPLTFIKNPLLWLETM----SKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS-SMKFLMVAA------EPVR 772 (2280)
Q Consensus 704 ~~vl~~~~~~~~~p~~l~~~i----~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~-~Lr~l~~gG------e~l~ 772 (2280)
. .......+ |...+.+.+ .+.++..+.+.|+++-.++..++..... ..|+ ..+.+-.|| |.++
T Consensus 167 ~-~~l~~~~l--d~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~---~~L~~~s~vi~~GGwK~~~~e~v~ 240 (365)
T PF04443_consen 167 R-FALDNDEL--DLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR---FRLPKGSIVIHGGGWKGRRKEAVS 240 (365)
T ss_pred e-eeecCCcc--CHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc---ccCCCCCEEEeCCCCCccccCccC
Confidence 4 34444333 555444433 4556777888887766566555554322 3444 355555555 4565
Q ss_pred H-HHHHHHHHHhcCCCC-CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccC
Q 037878 773 Q-TTVKRFVELTRPFGL-SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG 850 (2280)
Q Consensus 773 ~-~l~~~~~~~~~~~g~-~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~ 850 (2280)
. +..+.+.+. +|+ +...+++.||+||.....+.... --.+.|-+ +.|.||++. .++
T Consensus 241 r~ef~~~l~~~---~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----------------~~~~~p~w-V~iRDp~tl-~~~ 298 (365)
T PF04443_consen 241 REEFYARLQEV---FGVIPIENIYDMYGMTELNSQAYECGH-----------------GHFHVPPW-VIIRDPETL-EPL 298 (365)
T ss_pred HHHHHHHHHHH---HCCCCHHHeeeeeeccccchhheeCCC-----------------CcccCCCe-EEEECCCCC-cCC
Confidence 4 444444444 355 56689999999997654332110 00133555 888899875 556
Q ss_pred CCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-C---C-----eEEEEecCCC
Q 037878 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-D---G-----KFFITGRIKD 914 (2280)
Q Consensus 851 p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-d---G-----~l~~~GR~dd 914 (2280)
|.|+.|-|-+-.+.... |- +..-|.|+|.+. + | ++.++||.+.
T Consensus 299 ~~Ge~Gli~vidl~~~s-~p--------------------~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 299 PPGETGLIQVIDLANTS-YP--------------------GFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred CCCCeeEEEEEcccccC-CC--------------------cEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 89999999886553211 21 346699999874 2 2 7999999884
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=114.70 Aligned_cols=37 Identities=43% Similarity=0.785 Sum_probs=32.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
++|+|||||+|||+||..|.+.|+ +|++|||++.+||
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~~iGG 38 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSDDIGG 38 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSSSSG
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCCCCCc
Confidence 689999999999999999999999 7999999999999
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-06 Score=107.75 Aligned_cols=44 Identities=27% Similarity=0.660 Sum_probs=39.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
++..++|+|||||+|||+||..|.+.|+ +|+|+||++.+||.-+
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTDDIGGLWK 46 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCC-CceEEEecCCccceEe
Confidence 3457899999999999999999999999 6999999999999443
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-07 Score=101.55 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=52.1
Q ss_pred ceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCccCCCCcc
Q 037878 1336 LVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSEGGKPI 1404 (2280)
Q Consensus 1336 ~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v~~~~~~ 1404 (2280)
..+||+||.||-++.|.| .++. ..-.|+.||+||+||+||.+..|+.+||||+|++|..|..++++
T Consensus 156 ~a~VGkn~higgGa~I~G-VLep--~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 156 CAQVGKNSHIGGGASIGG-VLEP--LQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred cEEECCCcccCCcceEeE-EecC--CCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 356666666666666665 2222 23369999999999999999999999999999999999777766
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=109.54 Aligned_cols=43 Identities=40% Similarity=0.487 Sum_probs=39.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
+++||+|||||+||++||++|+++|+ +|+|+||.+.+|-+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCC-eEEEEecCCCCCCCccc
Confidence 46899999999999999999999998 69999999999986555
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.9e-07 Score=101.12 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=73.5
Q ss_pred cCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEcc
Q 037878 1572 LGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGA 1651 (2280)
Q Consensus 1572 lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~ 1651 (2280)
+||-++.++.|.+. .....-.+||+||+|+-++.|++-. +.. ...++.|||||+||+||.+..|+.+||||+|++
T Consensus 137 igA~~~~gtMVd~~--as~G~~a~VGkn~higgGa~I~GVL-ep~--~a~Pv~IgdncliGAns~~veGV~vGdg~VV~a 211 (271)
T COG2171 137 IGAGTGEGTMVDGR--ASVGSCAQVGKNSHIGGGASIGGVL-EPL--QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAA 211 (271)
T ss_pred ECcccCcceEEeee--eeeeccEEECCCcccCCcceEeEEe-cCC--CCCCeEECCccEeccccceEeeeEeCCCcEEec
Confidence 47888888888765 3334458999999999999986422 222 347899999999999999999999999999999
Q ss_pred CccccCCCccCCCcEEec
Q 037878 1652 LSVAPMHSVLQRGGIYIG 1669 (2280)
Q Consensus 1652 ~s~v~~~~~v~~~~~~~G 1669 (2280)
|..|+.+ .|......|
T Consensus 212 Gv~I~~~--tki~~~~~g 227 (271)
T COG2171 212 GVFITQD--TKIYDRVAG 227 (271)
T ss_pred ceEEeCC--cceEEeecc
Confidence 9999999 666666555
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-06 Score=98.82 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=61.4
Q ss_pred ceEECCCCEeCCCCEEeeccccCCc--------------------------eeecCEEECCCcEECCCCEECCCCEECCC
Q 037878 1336 LVLIGDGAVISEGALIQSHEVKNGV--------------------------LSFQPIKIARKVSVGPYAVIQKGSVIGEE 1389 (2280)
Q Consensus 1336 ~~~IG~~~~I~~~~~l~~~~~~~~~--------------------------~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~ 1389 (2280)
...||++|.|++++.|.+....-.. ...+++.||++|+||.+++|.+|++||++
T Consensus 53 ~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~ 132 (204)
T TIGR03308 53 YTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNG 132 (204)
T ss_pred eeEECCCCEECCCCEECCCCCCCCcccccccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCC
Confidence 3678999999999988643211000 12368999999999999999999999999
Q ss_pred CEECcCCcc----CCCCccccCCCceee
Q 037878 1390 AEVAPLQKS----EGGKPILKSTNANYV 1413 (2280)
Q Consensus 1390 a~ig~~s~v----~~~~~~~~g~p~~~~ 1413 (2280)
++||++++| ++++.+ .|+|++..
T Consensus 133 ~~I~~gs~v~~~i~~~~~~-~G~Pa~~~ 159 (204)
T TIGR03308 133 AVIAAGAVVTKDVAPYTIV-AGVPAKLI 159 (204)
T ss_pred CEECCCCEECCCCCCCcEE-EecCchHh
Confidence 999999997 777777 88998864
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=110.64 Aligned_cols=37 Identities=38% Similarity=0.720 Sum_probs=34.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+||+|||||++|+++|++|+++|. +|+|+||++.+|+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~~~~~ 38 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHRYAAM 38 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCCCc
Confidence 599999999999999999999998 6999999987654
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=109.64 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=37.8
Q ss_pred cCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 14 LHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 14 ~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++.+++.++||+|||||++||++|..|+++|+ +|+|+||++..
T Consensus 11 ~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 53 (415)
T PRK07364 11 LPSTRSLTYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPAE 53 (415)
T ss_pred CCCCCccccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCcc
Confidence 44556667899999999999999999999999 69999998764
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=100.17 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=61.2
Q ss_pred HcCCEECCCcEECccccCCC---------------CceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCE
Q 037878 1315 MLGAKLGSSVLLDTVDITDP---------------SLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAV 1379 (2280)
Q Consensus 1315 ~lGa~Ig~~v~i~~~~~~~~---------------~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~ 1379 (2280)
.+||.||+|+.|....+..+ ..++||++|.||.+|.|.+. ..++.-. +|+||++|+||++|+
T Consensus 188 r~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~t-LsGg~~~--~V~IGe~~lIGagA~ 264 (341)
T TIGR03536 188 RLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGT-LSGGGNI--VISVGEGCLLGANAG 264 (341)
T ss_pred cCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEE-EeCCCce--eEEECCCcEECCCCE
Confidence 47888888888843221112 12456666666666666332 2222111 299999999999999
Q ss_pred ECCCCEECCCCEECcCCccCCCCcccc
Q 037878 1380 IQKGSVIGEEAEVAPLQKSEGGKPILK 1406 (2280)
Q Consensus 1380 i~pg~~ig~~a~ig~~s~v~~~~~~~~ 1406 (2280)
| |+.||++|+||+|+.|.+++++.-
T Consensus 265 I--GI~IGd~~iIGAGavVtagTkI~~ 289 (341)
T TIGR03536 265 I--GIPLGDRCTVEAGLYITAGTKVAV 289 (341)
T ss_pred E--eeEECCCCEECCCCEEeCCcEEEE
Confidence 9 999999999999999999988843
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.1e-06 Score=109.88 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=36.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
++||+|||||++|++||+.|+++|+ +|+|+||.+.+|.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~~~g~k 43 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGA-QVLVIERGNSAGAK 43 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCCCCCCc
Confidence 5899999999999999999999999 69999999888764
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-06 Score=98.25 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=63.8
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceee-------cCEEECCCcEECCCCEECCCCEECCC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF-------QPIKIARKVSVGPYAVIQKGSVIGEE 1389 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~-------~~i~Ig~~~~iG~~~~i~pg~~ig~~ 1389 (2280)
+++||+++.|...... ...++||++|.|++++.|..+...++..++ +.++||++|+||.+++|.++++||++
T Consensus 96 ~~~ig~~~~i~~~~~i-~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~ 174 (197)
T cd03360 96 SAVIGEGCVIMAGAVI-NPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAG 174 (197)
T ss_pred CCEECCCCEEcCCCEE-CCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCC
Confidence 4567777777543321 235678888888777777655544433333 46889999999999999999999999
Q ss_pred CEECcCCcc----CCCCccccCCC
Q 037878 1390 AEVAPLQKS----EGGKPILKSTN 1409 (2280)
Q Consensus 1390 a~ig~~s~v----~~~~~~~~g~p 1409 (2280)
+.||++|+| ++++.+ .|+|
T Consensus 175 ~~v~~~~~v~~~~~~~~~~-~g~p 197 (197)
T cd03360 175 AIIGAGAVVTKDVPDGSVV-VGNP 197 (197)
T ss_pred CEECCCCEEcCCCCCCCEE-EecC
Confidence 999999988 445555 4443
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.3e-07 Score=97.37 Aligned_cols=50 Identities=42% Similarity=0.646 Sum_probs=41.0
Q ss_pred ccccccCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 9 DQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 9 ~~~~~~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.-|+.+.... ..||+|||||+|||+|||+|+++|. +|+|+|++..+||-+
T Consensus 20 ~~~~~l~~~~--esDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls~GGG~ 69 (262)
T COG1635 20 RYFEDLLDYL--ESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLSFGGGI 69 (262)
T ss_pred HHHHHHHhhh--hccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecccCCcc
Confidence 3444444332 4699999999999999999999999 599999999999933
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-06 Score=110.29 Aligned_cols=41 Identities=37% Similarity=0.488 Sum_probs=37.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||++||+||+.++++|. +|+|+||...+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcc
Confidence 46799999999999999999999998 699999999999954
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6e-06 Score=106.65 Aligned_cols=41 Identities=34% Similarity=0.388 Sum_probs=36.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCceEE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~~~ 62 (2280)
+.||+|||||++|+++|++|+++ |. +|+|+||++.+|+.+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~~~~~~aS 44 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKESGPARHQT 44 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCCccccccc
Confidence 37999999999999999999999 98 6999999987776543
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=8e-06 Score=107.98 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=38.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC--CCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT--VGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r--iGG~~ 61 (2280)
|+.+.||+|||||++||+||+.|+++|. +|+|+||.+. .||..
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~-~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGA-SVLLLEAAPREWRGGNS 45 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCCccc
Confidence 4567899999999999999999999998 6999999974 67743
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=8e-06 Score=105.83 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCceEE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~~~ 62 (2280)
..||+|||||++|+++|+.|++. |. +|+|+||.+.+|-+.+
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~-~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDW-NIEVVERLDSPAIESS 48 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCC-eEEEEEcCCCcchhcC
Confidence 46999999999999999999998 76 7999999778876444
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.5e-06 Score=106.86 Aligned_cols=36 Identities=36% Similarity=0.468 Sum_probs=32.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.||+|||||++|+++|++|+++|. +|+|+|+.+..+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~~~ 36 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDLPH 36 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCC
Confidence 489999999999999999999998 699999987654
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-05 Score=90.39 Aligned_cols=40 Identities=43% Similarity=0.543 Sum_probs=35.1
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+|.+..||+|||||+-|++|||.|+|.|. ++++||+.+-.
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~-killLeqf~~p 42 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGD-KILLLEQFPLP 42 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCC-eEEEEeccCCC
Confidence 45567899999999999999999999997 69999997654
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.8e-06 Score=105.79 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
++.||+|||||++|+++|++|+++|. +|+|+||+...++
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~~~~ 40 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMPPHQ 40 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccCCCC
Confidence 35799999999999999999999998 6999999876543
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-06 Score=113.09 Aligned_cols=39 Identities=38% Similarity=0.600 Sum_probs=35.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
+.++||+|||||++||++|..|++.|+ +|+|+||+...+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Confidence 456899999999999999999999999 699999997654
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.1e-06 Score=104.59 Aligned_cols=39 Identities=38% Similarity=0.510 Sum_probs=34.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
|.+.+||+|||||++||++|+.|++.|+ +|+|+|+++..
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~~~ 39 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDPEW 39 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCC
Confidence 3456799999999999999999999999 69999998753
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=95.07 Aligned_cols=50 Identities=42% Similarity=0.610 Sum_probs=41.6
Q ss_pred ccccccCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 9 DQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 9 ~~~~~~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+-|.++... .+.||+|||||++||+||++|+++|. +|+|+||++.+||.+
T Consensus 11 ~~~~~~~~~--~~~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 11 RYFEDLLDY--AESDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLAFGGGS 60 (254)
T ss_pred HHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCccc
Confidence 344544443 35799999999999999999999998 699999999999854
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=103.76 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=35.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
.++||+|||||++|++||+.|+++|+ +|+|+||.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGL-DVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCc
Confidence 35899999999999999999999999 6999999887654
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.9e-06 Score=110.74 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 187 GYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 187 G~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
-+.++..+.+++.|.+|+++++|++++.+++++.+.+++.+|+ +++++|.||.|
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~a~~vVgA 154 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RTLTSSYVVGA 154 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EEEEeCEEEEC
Confidence 3455666666667899999999999998888776666655562 57999999998
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.8e-06 Score=105.13 Aligned_cols=37 Identities=41% Similarity=0.574 Sum_probs=34.1
Q ss_pred EEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 25 GIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 25 ~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
+|||||+|||+||+.|+++|. +|+|+||++.+|+++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~-~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGL-SVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCC-cEEEEecCcccccccc
Confidence 699999999999999999998 6999999999998653
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=107.61 Aligned_cols=37 Identities=41% Similarity=0.592 Sum_probs=34.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++.||+|||||++||++|..|+++|+ +|+|+||++..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence 46899999999999999999999999 69999998765
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=104.24 Aligned_cols=39 Identities=36% Similarity=0.422 Sum_probs=34.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+..+.||+|||||++|+++|+.|+++|+ +|+|+||++..
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~~~ 41 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGL-SVALVEGREPP 41 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCCCc
Confidence 3556899999999999999999999999 69999998653
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=104.83 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=35.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
+||+|||||++||++|++|+++|+ +|+|+|+...+|..++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~~~~~~aS~ 41 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQPGPALETSF 41 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCCchhhhhee
Confidence 489999999999999999999998 69999998666554443
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=103.09 Aligned_cols=40 Identities=28% Similarity=0.466 Sum_probs=34.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~riGG 59 (2280)
.+.||+|||||+.|+++|++|++. +..+|+|+||.+.+|.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~ 84 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFAL 84 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhh
Confidence 357999999999999999999996 4336999999986653
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.6e-06 Score=95.04 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=48.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeeccc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSH 79 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~ 79 (2280)
.|++|||||++|+..|..|++.|+ +|+|+||++++||.|.+...++.|+.......+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk-~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpH 58 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEKRNHIGGNAYDEADDQTGILVHKYGPH 58 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCC-EEEEEeccccCCCccccccCCCCCeEEeeccCc
Confidence 689999999999999999999998 699999999999999998877666655444333
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.7e-06 Score=104.88 Aligned_cols=46 Identities=37% Similarity=0.662 Sum_probs=40.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
++++.||+|||||+|||++|++|+++|..+++||||++++||--+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 4567899999999999999999999998449999999999995443
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=94.73 Aligned_cols=51 Identities=43% Similarity=0.705 Sum_probs=42.4
Q ss_pred cccccccCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 8 DDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 8 ~~~~~~~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++.|.++...+ +.||+|||||+|||+||++|+++|+ +|+|+||+..+||.+
T Consensus 14 ~~~~~~~~~~~--~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 14 EEYFEKLLDYL--EVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLSFGGGM 64 (257)
T ss_pred HHHHHHHHHhc--cCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCCcc
Confidence 34455555433 4799999999999999999999999 699999999998854
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=102.61 Aligned_cols=40 Identities=45% Similarity=0.657 Sum_probs=35.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
|+++.||+|||||++||++|..|+++|+ +|+|+||++.++
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~~~~ 40 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAEIG 40 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCcccc
Confidence 4456899999999999999999999999 699999987653
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-05 Score=102.21 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=36.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCceEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~~~ 62 (2280)
+.+.||+|||||+.|+++||+|++. |. +|+|+||++.+|+...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~-~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEW-SITMFERLDGVALESS 47 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCC-eEEEEEcCCchhhhcC
Confidence 4567999999999999999999985 66 6999999988776543
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=103.03 Aligned_cols=37 Identities=43% Similarity=0.644 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++.||+|||||++||++|+.|+++|+ +|+|+||....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 38 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPLA 38 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCcc
Confidence 36899999999999999999999999 69999998764
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.1e-06 Score=104.96 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+++||+|||||++||++|+.|+++|+ +|+|+||.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGH-SVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCCcc
Confidence 45799999999999999999999999 69999998754
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=102.85 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.+.||+|||||++||++|+.|+++|+ +|+|+||++.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~-~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGV-DVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 45899999999999999999999999 6999999864
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=102.83 Aligned_cols=33 Identities=52% Similarity=0.803 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
.+||+|||||++||++|..|+++|+ +|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence 5799999999999999999999999 69999997
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.9e-05 Score=102.18 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=32.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~r 56 (2280)
.+.||+|||||++||++||+|+++ |. +|+|+|++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCcc
Confidence 457999999999999999999998 87 6999999643
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-05 Score=103.24 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=34.4
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~~ 61 (2280)
.||+|||||++|+++|+.|++. |. +|+|+||.+.+|.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~-~V~VlEk~~~~a~~~ 41 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNW-SITLIERLDAVAAES 41 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCC-eEEEEEcCCcchhhh
Confidence 4899999999999999999997 87 699999988776533
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-05 Score=100.59 Aligned_cols=34 Identities=41% Similarity=0.591 Sum_probs=31.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.||+|||||++|+++|++|+++|. +|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGL-SVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence 489999999999999999999998 6999999764
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=97.59 Aligned_cols=37 Identities=43% Similarity=0.556 Sum_probs=34.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+||+|||||++||++|+.|++.|. +|+|+||++..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCc
Confidence 489999999999999999999999 6999999887654
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-05 Score=99.27 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=33.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
|+.+||+|||||++||++|+.|+++|+ +|+|+||++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence 345899999999999999999999999 6999999864
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=102.08 Aligned_cols=35 Identities=43% Similarity=0.607 Sum_probs=32.4
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
||+|||||++||++|+.|+++|+ +|+|+||+...+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCccc
Confidence 79999999999999999999999 699999987653
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=105.37 Aligned_cols=39 Identities=38% Similarity=0.587 Sum_probs=35.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.+.+.||+|||||++||++|+.|++.|+ +|+|+||++.+
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~~ 58 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDTL 58 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence 3456799999999999999999999999 69999999865
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=100.13 Aligned_cols=38 Identities=50% Similarity=0.581 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~ri 57 (2280)
.+.||+|||||++|+++||+|+++ |.++|+|+||+.-.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 467999999999999999999995 85369999997533
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.03 E-value=3e-05 Score=101.85 Aligned_cols=38 Identities=45% Similarity=0.645 Sum_probs=35.7
Q ss_pred eEEEECccHHHHHHHHHHHhCC-CCceEEEecCCCCCceE
Q 037878 23 RIGIVGGGPSGLSTAYALAKLG-YRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G-~~~VtVlEk~~riGG~~ 61 (2280)
||+|||||++||+||+.++++| . +|+|+||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAA-NVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCc-cEEEEecCCCCCCcc
Confidence 7999999999999999999999 8 699999999999854
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK05883 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=78.51 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
...+++++|.++.++.|+++++.|..+++|+ ++|-|||..+.++..+.++||+.++..++.+.+|+++|+.++.+.
T Consensus 11 ~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~ 87 (91)
T PRK05883 11 SPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAK 87 (91)
T ss_pred CHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 3577899999999999999999999999996 899999999999999999999999999999999999999999764
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-05 Score=104.99 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=38.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
|++++||+|||||++|+++|+.|+++|. +|+|+||++..+|-.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~~~GtS 45 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDLASATS 45 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcc
Confidence 4567899999999999999999999999 699999998777743
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.02 E-value=3e-06 Score=94.05 Aligned_cols=39 Identities=44% Similarity=0.760 Sum_probs=33.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||+|||+||++|+++|+ +|+|+|++..+||.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~~GGg 55 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLSPGGG 55 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS-BTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCC-eEEEEecCCCCCcc
Confidence 5799999999999999999999999 59999999999983
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.9e-05 Score=101.02 Aligned_cols=41 Identities=32% Similarity=0.386 Sum_probs=37.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
|+.+.||+|||||++|+++|+.|+++|. +|+|+||++..+|
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~-~V~LlEk~d~~~G 43 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGL-KVLLCEKDDLAQG 43 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCCCCC
Confidence 5567899999999999999999999999 6999999986655
|
|
| >CHL00124 acpP acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=78.47 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChhh-cccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLVS-YGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~-lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
..++.+.++++.+++++++++.|..+++|.+ +|.||+..+.++..+.++||+.++..++.+.+|++++++++.+..
T Consensus 3 ~~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 3 KNDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 3567789999999999998889999999997 999999999999999999999999999999999999999997643
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6e-06 Score=106.32 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
..||+|||||++||++|..|+++|+ +|+|+|+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 4799999999999999999999999 699999874
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-05 Score=109.26 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=34.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
.+||+|||||++|+++|++|+++|. +|+|+|++..+|+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~~~~~ 297 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGW-QVTLYEADEAPAQ 297 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC-eEEEEecCCCccc
Confidence 3699999999999999999999998 6999999877664
|
|
| >PRK00982 acpP acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=77.75 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
++.+.++++.+++++++++.+..+.+| -++|-|||..+.+...+++++|+.++..++.+.+|+++|+.++.+
T Consensus 3 ~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~ 75 (78)
T PRK00982 3 EIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEK 75 (78)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHH
Confidence 467889999999999998899999999 799999999999999999999999999999999999999999875
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.9e-06 Score=104.81 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=38.8
Q ss_pred HHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeC-CCceEEEEeCEEEEc
Q 037878 189 TSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHS-NGECEVMEFDKIIIS 241 (2280)
Q Consensus 189 ~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~-~G~~~~i~aD~VI~A 241 (2280)
.++....++..|++|+++++|++++.+++++.+.+... +|+.++++||.||-|
T Consensus 114 ~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgA 167 (356)
T PF01494_consen 114 DRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGA 167 (356)
T ss_dssp HHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-
T ss_pred HHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecc
Confidence 33333333445789999999999999888876666664 565568999999998
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.5e-05 Score=98.64 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+||+|||||++||++|+.|+++|+ +|+|+||.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH-EPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-ceEEEeCCCCc
Confidence 489999999999999999999999 69999997643
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.1e-05 Score=101.07 Aligned_cols=36 Identities=39% Similarity=0.640 Sum_probs=33.2
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
||+|||+|+|||+||+.++++|. +|+|+||.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~-~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGA-KVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT--EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcC-eEEEEEeeccccc
Confidence 89999999999999999999998 6999999999998
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.5e-05 Score=100.47 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
++||+|||||+.|+++|+.|+++|. +|+|+||++..+|
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~~G 43 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIATG 43 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCCCC
Confidence 5899999999999999999999999 6999999775444
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-05 Score=105.57 Aligned_cols=36 Identities=39% Similarity=0.620 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.+.||+|||||++||++|+.|+++|+ +|+|+||++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGV-DSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 35799999999999999999999999 6999999764
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.2e-05 Score=99.63 Aligned_cols=49 Identities=35% Similarity=0.466 Sum_probs=43.4
Q ss_pred cCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 14 LHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 14 ~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
|.+++..+.||+|||+|.+||+||+.|+++|. +|+|+||.+.+||.+..
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGA-KVLVVEKASTCGGATAW 49 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCccccc
Confidence 34566778999999999999999999999998 69999999999997644
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=100.47 Aligned_cols=40 Identities=45% Similarity=0.669 Sum_probs=35.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
++++||+|||||++|+++||+|+++|. +|+|+|++...+|
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g 41 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGG 41 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCc
Confidence 457899999999999999999999998 7999999776553
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=104.52 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..||+|||||++||++|..|+++|+ +|+|+||.+..
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi-~V~llEr~~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGL-NTVIVDKSDGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCC-CEEEEeCCCcc
Confidence 4799999999999999999999999 69999998764
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=97.70 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=37.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||++||+||+.++++|. +|+|+||.+..||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCcc
Confidence 46799999999999999999999998 699999999999854
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.8e-05 Score=98.78 Aligned_cols=68 Identities=28% Similarity=0.419 Sum_probs=51.8
Q ss_pred eCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccc
Q 037878 1576 IGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVA 1655 (2280)
Q Consensus 1576 IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v 1655 (2280)
||.||.|+.++.+.. ..|++||+||+||.| +++.|++++.|++++.+.||+.+|.++++|.+-++
T Consensus 353 IG~~c~IgsN~~I~~---S~iw~~v~Igdnc~I------------~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l 417 (673)
T KOG1461|consen 353 IGANCRIGSNVRIKN---SFIWNNVTIGDNCRI------------DHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVL 417 (673)
T ss_pred ecCCCEecCceEEee---eeeecCcEECCCceE------------eeeEeecCcEeCCCcccCCCcEEeeeeEeCCCccc
Confidence 555555555443333 789999999999999 78889999999888888888877777777777776
Q ss_pred cCC
Q 037878 1656 PMH 1658 (2280)
Q Consensus 1656 ~~~ 1658 (2280)
+++
T Consensus 418 ~~n 420 (673)
T KOG1461|consen 418 PKN 420 (673)
T ss_pred ccc
Confidence 666
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.2e-05 Score=100.48 Aligned_cols=43 Identities=33% Similarity=0.519 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC--CCCceEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH--TVGGMCE 62 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~--riGG~~~ 62 (2280)
..+.||+|||+|.|||+||+.++++|. +|+|+||.+ .+||.+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGK-RVLLLDQENEANLGGQAF 46 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCCCcee
Confidence 456899999999999999999999998 699999999 8899653
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.8e-05 Score=98.21 Aligned_cols=34 Identities=44% Similarity=0.669 Sum_probs=31.5
Q ss_pred eEEEECccHHHHHHHHHHHhCC-CCceEEEecCCCC
Q 037878 23 RIGIVGGGPSGLSTAYALAKLG-YRNVTLLEKYHTV 57 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G-~~~VtVlEk~~ri 57 (2280)
||+|||||++||++|+.|+++| + +|+|+||....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI-KIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc-eEEEEeCCCcc
Confidence 7999999999999999999999 9 69999998653
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=2e-05 Score=78.96 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCeeCCCceeccCCccc----------CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcE
Q 037878 1573 GAKIGRYCSIRAINPVS----------CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSV 1642 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~----------~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ 1642 (2280)
.+|||+.|.+.....+- ..-.+.|||++||+++|.+ .-..||..+.||.+++|+-+..
T Consensus 54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVV------------nAAqIgsyVh~GknaviGrrCV 121 (184)
T KOG3121|consen 54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVV------------NAAQIGSYVHLGKNAVIGRRCV 121 (184)
T ss_pred cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEe------------ehhhheeeeEeccceeEcCceE
Confidence 47899988887654331 1236899999999999988 4446777777777777777777
Q ss_pred eCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1643 VSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1643 ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
+-|-|.|-.++++|.+.-+|+.+.+.|+|+
T Consensus 122 lkdCc~ild~tVlPpet~vppy~~~~g~p~ 151 (184)
T KOG3121|consen 122 LKDCCRILDDTVLPPETLVPPYSTIGGNPA 151 (184)
T ss_pred hhhheeccCCcccCcccccCCceEEcCCCc
Confidence 777777888888888888999999999996
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.1e-05 Score=99.73 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHhHC-CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 189 TSLWQKLSKYL-PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 189 ~~l~~~la~~l-g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
..|.+.|.+.+ +..++++++|++|+.+++++ .+...+| +++++|.||.|
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~--~v~~~~g--~~~~ad~vVgA 154 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEV--QVLFTDG--TEYRCDLLIGA 154 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecCCcE--EEEEcCC--CEEEeeEEEEC
Confidence 34667777766 35689999999999888866 5555677 47899999998
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK05350 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=76.03 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
..++.+++.++.++.+++++++|..+.+| -++|-|||..+.++..+.++||++++..++.+.+|++++++++.+..
T Consensus 4 ~~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 4 REEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 45678899999999999999999999997 59999999999999999999999999999999999999999998653
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.8e-05 Score=98.55 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=33.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+++||+|||||++||++|+.|+++|+ +|+|+|+++..
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~~ 38 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVPE 38 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCCc
Confidence 35799999999999999999999999 69999998753
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.3e-05 Score=97.20 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
+.||+|||||++||++|+.|+++|+ +|+|+||++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCc
Confidence 5799999999999999999999999 6999999875
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5e-05 Score=98.20 Aligned_cols=37 Identities=41% Similarity=0.673 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+++||+|||||++||++|+.|+++|+ +|+|+|+++..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCCC
Confidence 45799999999999999999999999 69999998654
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.7e-05 Score=98.17 Aligned_cols=35 Identities=34% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.+||+|||||++||++|+.|+++|+ +|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCCc
Confidence 4699999999999999999999999 6999999864
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.6e-05 Score=98.30 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=31.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCC--CCceEEEecCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHT 56 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G--~~~VtVlEk~~r 56 (2280)
+||+|||||++||++|..|+++| + +|+|+||++.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCCc
Confidence 68999999999999999999996 8 6999999864
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.3e-05 Score=97.41 Aligned_cols=35 Identities=37% Similarity=0.606 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+||+|||||++||++|..|+++|+ +|+|+||++.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcc
Confidence 489999999999999999999999 69999998765
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.9e-05 Score=98.91 Aligned_cols=35 Identities=31% Similarity=0.519 Sum_probs=32.3
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+||+|||||++||++|+.|+++|+ +|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCCcc
Confidence 589999999999999999999999 69999998654
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=6e-05 Score=97.75 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=32.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC---CCCceEEEecCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKL---GYRNVTLLEKYH 55 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~---G~~~VtVlEk~~ 55 (2280)
|++.||+|||||++||++|+.|+++ |+ +|+||||..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~~ 39 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGL-PVALIEAFA 39 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCCC
Confidence 3568999999999999999999998 99 699999963
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.6e-05 Score=97.13 Aligned_cols=36 Identities=39% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+.||+|||||++||++|+.|++.|+ +|+|+||+...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCc
Confidence 5799999999999999999999999 69999998764
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=95.29 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=34.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
.+.||+|||+|.|||+||..++ +|. +|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDL-KILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCC-CEEEEecCCCCCCc
Confidence 4579999999999999999985 688 69999999998874
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=95.60 Aligned_cols=35 Identities=40% Similarity=0.551 Sum_probs=32.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.+|+|||||++||++|..|+++|+ +|+|+||.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcc
Confidence 689999999999999999999999 69999998754
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=91.09 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=37.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||++|+..|..++-+|+ +|+++|++|--.|-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D~AsGTS 51 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGL-KVALVEKGDLASGTS 51 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCC-eEEEEecCcccCccc
Confidence 67899999999999999999999999 699999999988843
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00027 Score=93.50 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=47.5
Q ss_pred CCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE---CC--eEEEEecCCCeEEECCeeech
Q 037878 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII---DG--KFFITGRIKDLIIVAGRNVYS 925 (2280)
Q Consensus 851 p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~---dG--~l~~~GR~dd~IKi~G~rI~~ 925 (2280)
..|+.-||+|... .|.|. ||.||++++. ++ .+.|+||.+.++.+.|+++.-
T Consensus 353 e~G~~YelviTt~---~GLyR---------------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e 408 (528)
T PF03321_consen 353 EVGEEYELVITTN---SGLYR---------------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSE 408 (528)
T ss_dssp -TT-EEEEEEEST---TS-SS---------------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEH
T ss_pred cCCCeEEEEEecc---cceee---------------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCH
Confidence 5788999999764 24441 7999999994 67 899999999999999999999
Q ss_pred HHHHHHHHhc
Q 037878 926 ADVEKTVESS 935 (2280)
Q Consensus 926 ~EIE~~L~~~ 935 (2280)
.+|+++|.+.
T Consensus 409 ~~v~~av~~~ 418 (528)
T PF03321_consen 409 EQVQEAVARA 418 (528)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00027 Score=95.44 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=40.8
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
....+.||+|||+|.+|++||+.++++|. +|+|+||++.+||.+..
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCccccc
Confidence 34557899999999999999999999998 69999999999997644
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00036 Score=86.17 Aligned_cols=54 Identities=26% Similarity=0.344 Sum_probs=40.8
Q ss_pred HHHHHHHHHh----HCCCceEeCcceEEEEEcCCc-cEEEEEe-CCCceEEEEeCEEEEc
Q 037878 188 YTSLWQKLSK----YLPTEVHCNSEVLAIRRDSTT-VGVDVKH-SNGECEVMEFDKIIIS 241 (2280)
Q Consensus 188 ~~~l~~~la~----~lg~~I~l~t~V~~I~~~~~~-v~V~v~t-~~G~~~~i~aD~VI~A 241 (2280)
+..|.+.+.+ .-|.++++|++|++|++.+++ |.|.+++ .+|+..+++++.|++.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEEC
Confidence 4445555544 337899999999999998776 8777754 4555578999999997
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.4e-05 Score=97.06 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=32.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
||..+||+|||||++||++|..|+++|+ +|+|+|+.
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 4456899999999999999999999999 69999996
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.8e-05 Score=96.15 Aligned_cols=37 Identities=43% Similarity=0.621 Sum_probs=33.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
+++.||+|||||++|+++|+.|+++|+ +|+|+|++..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Confidence 456899999999999999999999999 6999999753
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.9e-05 Score=91.80 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=34.3
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+||+|||||++||+||..|++.|+ +|+|+|+++ .||.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL-KTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEeccC-CCcce
Confidence 489999999999999999999999 699999986 77754
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK09184 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.9e-05 Score=74.65 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHhCC---CCccccCCCChhh--cccchHHHHHHHHHHHHHhCCccCc---ccccCcccHHHHHHHHH
Q 037878 1080 KDIVEFLKGLVSEQTGI---PITKVSATDSLVS--YGIDSIGVVRAAQKLSDFLGVPVGA---VDIFTATCIADLASFSE 1151 (2280)
Q Consensus 1080 ~~~e~~l~~iw~~vLg~---~~~~i~~~~~Ff~--lGGdSL~a~~l~~~l~~~~g~~l~~---~di~~~pti~~LA~~l~ 1151 (2280)
+++++.|+++.++.|++ ++++|..+++||. ||.|||.++.++..+.+.||+.++. ..+...+|+++|++++.
T Consensus 5 ~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~ 84 (89)
T PRK09184 5 TALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVA 84 (89)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHH
Confidence 56788999999999995 7789999999864 9999999999999999999999964 34667899999999997
Q ss_pred h
Q 037878 1152 N 1152 (2280)
Q Consensus 1152 ~ 1152 (2280)
.
T Consensus 85 ~ 85 (89)
T PRK09184 85 A 85 (89)
T ss_pred H
Confidence 6
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=95.81 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=38.5
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+...+.||+|||+|++||+||+.++++|. +|+|+||.+..||.
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~~~gG~ 49 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAARGL-DTLVVEKSAHFGGS 49 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHHCCC-cEEEEEcCCCCCch
Confidence 34456899999999999999999999998 69999999999984
|
|
| >TIGR00517 acyl_carrier acyl carrier protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.5e-05 Score=73.88 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
++.++++++.++.++++++.+..+++|+ ++|.|||..+.++..+.++||+.++..++.+..|++++++++.+
T Consensus 3 ~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~ 75 (77)
T TIGR00517 3 EIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEE 75 (77)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHh
Confidence 5678999999999999988899999997 79999999999999999999999999999999999999999975
|
S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site. |
| >PRK12449 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.5e-05 Score=73.15 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
..++.+++.++.++.++.++..+..+.+|. ++|-||+..+.+...+.++||+.++..++.+.+|++++++++.+
T Consensus 3 ~~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~ 77 (80)
T PRK12449 3 REEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQ 77 (80)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHH
Confidence 456788999999999999888999999996 99999999999999999999999999999999999999999975
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.4e-05 Score=61.05 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=27.0
Q ss_pred eEEEccCeEEccceeEcCCcEeCCCceecccceeec
Q 037878 2238 KIRIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMK 2273 (2280)
Q Consensus 2238 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~s~~~~ 2273 (2280)
|++||++||||++|++ |++|||+++|+++++++|
T Consensus 1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 6899999999999998 799999999999999875
|
... |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=94.79 Aligned_cols=36 Identities=42% Similarity=0.611 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
+++||+|||||++|+++|..|+++|+ +|+|+|+...
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 39 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAAP 39 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCCC
Confidence 45799999999999999999999999 6999999753
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=91.99 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=32.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+||+|||||++||++|+.|+++|+ +|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Confidence 589999999999999999999999 69999998654
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0021 Score=84.60 Aligned_cols=48 Identities=31% Similarity=0.400 Sum_probs=36.9
Q ss_pred ccccccccCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 7 IDDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 7 ~~~~~~~~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
|+.++.... +.....||+|||||++||++|..|+++|+ +|+|+|+...
T Consensus 95 ~~~~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl-~V~LIe~~~p 142 (529)
T PLN02697 95 IADKLPPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 142 (529)
T ss_pred ccccCCCCC-cccCcccEEEECcCHHHHHHHHHHHhCCC-cEEEecCccc
Confidence 444444333 23345899999999999999999999999 6999998543
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=95.12 Aligned_cols=32 Identities=41% Similarity=0.742 Sum_probs=30.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
+||+|||||+||++||+.|+++|+ +|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 589999999999999999999999 69999997
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.5e-05 Score=73.11 Aligned_cols=72 Identities=21% Similarity=0.442 Sum_probs=48.7
Q ss_pred HHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEE
Q 037878 927 DVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVK 1006 (2280)
Q Consensus 927 EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 1006 (2280)
|||++|.+||+|.+ |+|++.+++..++ ...++++. ..+++.++++++|+. ++.|. ...
T Consensus 1 EIE~~l~~~~~V~~---~~V~~~~d~~~g~---------~l~a~vv~--------~~~~i~~~~~~~l~~-~~~P~-~~~ 58 (73)
T PF13193_consen 1 EIESVLRQHPGVAE---AAVVGVPDEDWGE---------RLVAFVVL--------DEEEIRDHLRDKLPP-YMVPR-RIR 58 (73)
T ss_dssp HHHHHHHTSTTEEE---EEEEEEEETTTEE---------EEEEEEEE--------HHHHHHHHHHHHS-G-GGS-S-EEE
T ss_pred CHHHHHhcCCCccE---EEEEEEEcccccc---------cceeEEEe--------eecccccchhhhCCC-cceee-EEE
Confidence 89999999999875 9999988764331 22333332 225777777777664 56563 255
Q ss_pred EecCCC-ccCCCCcc
Q 037878 1007 LIKPRT-MSKTTSGK 1020 (2280)
Q Consensus 1007 lv~~~~-lP~t~sGK 1020 (2280)
++.+++ ||+|+|||
T Consensus 59 ~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 59 FVRLDEELPRTPSGK 73 (73)
T ss_dssp EEEESSSEEBETTSS
T ss_pred EccccCcCCCCCCCC
Confidence 555577 99999999
|
... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.3e-05 Score=61.12 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=26.1
Q ss_pred CeEECCCcEEccCCeeCCCcEeCCCcEEccCccccC
Q 037878 1622 KVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPM 1657 (2280)
Q Consensus 1622 ~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~ 1657 (2280)
+++||++|+||.++.| |++|||+++|++++++++
T Consensus 1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 5789999999999998 799999999999998864
|
... |
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=97.31 Aligned_cols=43 Identities=33% Similarity=0.529 Sum_probs=38.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
...+.||+|||+| +|++||+..++.|. +|+|+||.+.+||.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGL-SVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCC-cEEEEecCCCCcCccc
Confidence 3457899999999 89999999999998 6999999999999554
|
|
| >COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=4e-05 Score=67.98 Aligned_cols=67 Identities=16% Similarity=0.332 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1085 FLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1085 ~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
.|++...++++..++++..++|...+|.|||.+|+++.+.|++ |..|+..+++++|||.+--+.+..
T Consensus 2 ~Lr~~~~~Ll~e~~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~ 68 (74)
T COG3433 2 ALREQIAELLGESVEELDDQENLIDYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLST 68 (74)
T ss_pred cHHHHHHHHHcCChhhcCchhhHHHhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHh
Confidence 3556777888887888889999999999999999999999886 999999999999999999988865
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00089 Score=85.60 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=31.4
Q ss_pred eEEEECccHHHHHHHHHH--HhCCCCceEEEecCCCC
Q 037878 23 RIGIVGGGPSGLSTAYAL--AKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~L--a~~G~~~VtVlEk~~ri 57 (2280)
||+|||||+|||++|++| ++.|. +|+|+|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccc
Confidence 899999999999999999 77888 69999998776
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=98.98 Aligned_cols=43 Identities=35% Similarity=0.560 Sum_probs=39.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
.+.||+|||||++||+||+.++++|. +|+|+||.+.+||....
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGL-DVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCC-eEEEEecCCCCCCccce
Confidence 36799999999999999999999998 69999999999996543
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=99.42 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=35.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
.+.||+|||||+|||+||+.+++.|. +|+|+||...+||
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~-~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY-NVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEecCCCCCc
Confidence 46799999999999999999999998 6999999887764
|
|
| >smart00823 PKS_PP Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.8e-05 Score=72.96 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhCCCCcc-ccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1080 KDIVEFLKGLVSEQTGIPITK-VSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1080 ~~~e~~l~~iw~~vLg~~~~~-i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
...+..+.+.|.++++.+... ++.+++||++|+||+.++++...+++.+++.++..+++++||+.+|++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~ 84 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAA 84 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHH
Confidence 445678999999999987655 4889999999999999999999999999999999999999999999998864
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.8e-05 Score=76.26 Aligned_cols=92 Identities=17% Similarity=0.307 Sum_probs=71.9
Q ss_pred HcCCEECCCcEECccccCCC-----------CceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCC
Q 037878 1315 MLGAKLGSSVLLDTVDITDP-----------SLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKG 1383 (2280)
Q Consensus 1315 ~lGa~Ig~~v~i~~~~~~~~-----------~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg 1383 (2280)
+...|||+.|.+.+....-| -.+.|||+++|+++|++....+. .-|.||+||.||.+|++..-
T Consensus 52 LAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIg------syVh~GknaviGrrCVlkdC 125 (184)
T KOG3121|consen 52 LANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIG------SYVHLGKNAVIGRRCVLKDC 125 (184)
T ss_pred cccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhhe------eeeEeccceeEcCceEhhhh
Confidence 34578899888854322222 24889999999999998765541 23568999999999999999
Q ss_pred CEECCCCEECcCCccCCCCccccCCCceee
Q 037878 1384 SVIGEEAEVAPLQKSEGGKPILKSTNANYV 1413 (2280)
Q Consensus 1384 ~~ig~~a~ig~~s~v~~~~~~~~g~p~~~~ 1413 (2280)
++|-|++++-|-+.+++-+++ .|+|+...
T Consensus 126 c~ild~tVlPpet~vppy~~~-~g~p~~~~ 154 (184)
T KOG3121|consen 126 CRILDDTVLPPETLVPPYSTI-GGNPAQVV 154 (184)
T ss_pred eeccCCcccCcccccCCceEE-cCCCceee
Confidence 999999999999999988888 88888865
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=95.29 Aligned_cols=42 Identities=33% Similarity=0.618 Sum_probs=35.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCCC-ceEEE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVG-GMCES 63 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~riG-G~~~t 63 (2280)
++|+|||||++|+++|.+|.+.+.. +|+|||++..+| |...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 5899999999999999999876431 699999999998 65444
|
|
| >PRK07081 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.3e-05 Score=71.87 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHh--CCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccC--cccHHHHHHHHHhhhh
Q 037878 1083 VEFLKGLVSEQT--GIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFT--ATCIADLASFSENLVM 1155 (2280)
Q Consensus 1083 e~~l~~iw~~vL--g~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~--~pti~~LA~~l~~~~~ 1155 (2280)
++.++++..+.+ +.+++.++.+++|+++|-||+.+++++..|.+.||++++..++.. .+|+++|++++.....
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 467888999984 445568999999999999999999999999999999999998875 8999999999987654
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00028 Score=94.67 Aligned_cols=41 Identities=32% Similarity=0.480 Sum_probs=37.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||+|.+||+||+.|+++|. +|+||||++..||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGL-EPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcee
Confidence 36799999999999999999999998 699999999999964
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0003 Score=80.85 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=35.6
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
.|+|||+|.+||+|+-.+-..|- .|+++|++..+||..-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg-~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGG-IVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCC-eEEEEeccCCcCCcce
Confidence 59999999999999999999987 5999999999999543
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=84.38 Aligned_cols=44 Identities=36% Similarity=0.664 Sum_probs=40.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESV 64 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~ 64 (2280)
.++||+|||+|++|-.||+..+|.|+ +-+.+|+++.+||-|-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl-kTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL-KTACVEKRGTLGGTCLNV 81 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc-eeEEEeccCccCceeeec
Confidence 57999999999999999999999999 499999999999988553
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00029 Score=95.04 Aligned_cols=40 Identities=28% Similarity=0.529 Sum_probs=35.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC--CCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G--~~~VtVlEk~~riGG~ 60 (2280)
.+.||+|||||+|||+||+.++++| . +|+|+||....||.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~-~V~vleK~~~~gg~ 43 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSL-DVAVVAKTHPIRSH 43 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCC-cEEEEeccCCCchh
Confidence 4579999999999999999999875 6 69999998877773
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0006 Score=90.78 Aligned_cols=40 Identities=30% Similarity=0.552 Sum_probs=36.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+||||| +||+||+.++++|. +|+|+||....||.+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL-SVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC-cEEEEecCCCCCcce
Confidence 36799999999 99999999999998 699999999999854
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=91.44 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=31.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.||+|||||++|+++|+.|++.|+ +|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI-KTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC-eEEEecCCC
Confidence 589999999999999999999999 699999864
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00027 Score=94.11 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=38.7
Q ss_pred HHHHHHHHhHCCCc-eEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 189 TSLWQKLSKYLPTE-VHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 189 ~~l~~~la~~lg~~-I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
..|.+.|.+.++.+ ++++++|++|+.+++++ +++..+| +++++|.||.|
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~V--tV~~~dG--~ti~aDlVVGA 243 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKV--TVVLENG--QRYEGDLLVGA 243 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEE--EEEECCC--CEEEcCEEEEC
Confidence 45777777777754 67899999999888865 5666777 47899999998
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00074 Score=91.12 Aligned_cols=43 Identities=30% Similarity=0.495 Sum_probs=38.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
.+.||+|||+|.+|++||+.++++|. +|+|+||++.+||.+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGL-KVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCCcccc
Confidence 35799999999999999999999998 69999999999996643
|
|
| >PRK07117 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=69.37 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHh-CCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1079 NKDIVEFLKGLVSEQT-GIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vL-g~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
..++.+.++++.++.+ ++++++|..+.+|.+||.|||..+.++..+.+.||+.++-.++-+-.|+++++.++.+
T Consensus 3 ~~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~ 77 (79)
T PRK07117 3 KQRIFDILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYA 77 (79)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHH
Confidence 3567789999999999 7999999999999999999999999999999999999999999999999999999875
|
|
| >PRK05828 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=69.46 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHH-HhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSE-QTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~-vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
..++.+.+.++.++ .++.+.+.+..+.+|.+||.|||..+.++..+.+.||++++-.++.+..|++++..++.+..
T Consensus 3 ~~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 3 EMEILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred HHHHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 45677889999997 68888888899999999999999999999999999999999999999999999999997644
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=94.69 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=34.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
..+||+|||||++||+||.+|++.|+ +|+|+|+ ++||.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~-~v~li~~--~~GG~~ 248 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGI-RTGIVAE--RFGGQV 248 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEec--CCCCee
Confidence 45799999999999999999999999 6999986 489865
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=88.96 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=31.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+||+|||||++|+++|+.|+++ + +|+|+|+++..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~-~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-M-KVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-C-CEEEEECCCcc
Confidence 6999999999999999999999 8 69999998764
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00033 Score=91.70 Aligned_cols=33 Identities=42% Similarity=0.606 Sum_probs=30.5
Q ss_pred CeEEEECccHHHHHHHHHHHh----CCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAK----LGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~----~G~~~VtVlEk~~ 55 (2280)
+||+|||||++||++|+.|++ +|+ +|+|+|+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~-~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDL-KVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCC-eEEEEeCCC
Confidence 489999999999999999999 899 699999954
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=96.91 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=35.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+++||+|||||+.|+++|+.|+++|. +|+|+||++..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGL-RVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccCCC
Confidence 45899999999999999999999999 6999999987666
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00057 Score=92.84 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=33.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHh-CCCCceEEEecCCC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLEKYHT 56 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlEk~~r 56 (2280)
|+++.||+|||||++||++|..|++ .|+ +|+||||.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCC
Confidence 4567899999999999999999999 599 6999999753
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00095 Score=90.26 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=36.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC---CCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLG---YRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G---~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||+|||+||+.++++| . +|+|+||....||.+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~~~~~~~s 47 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKTQPMRSHS 47 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcccCCCCCc
Confidence 3579999999999999999999998 7 699999999888743
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0002 Score=103.48 Aligned_cols=42 Identities=40% Similarity=0.571 Sum_probs=38.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.+.||+|||||.|||+||+..+++|. +|+|+||.+..||.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGA-QVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEccCCCCCch
Confidence 456899999999999999999999998 699999999999954
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00047 Score=93.36 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=34.8
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
||+|||||+|||+||+.++++|. +|+|+||....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~-~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL-NTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCCcc
Confidence 79999999999999999999998 699999998877743
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.8e-05 Score=104.96 Aligned_cols=43 Identities=47% Similarity=0.842 Sum_probs=40.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
++.++|+|||||+|||+||++|+++|+ +|+|||+.+++||.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEE
Confidence 457899999999999999999999999 6999999999999875
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.7e-05 Score=102.56 Aligned_cols=43 Identities=37% Similarity=0.729 Sum_probs=39.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
+.+||+|||||+|||+||++|+++|+ +|+|+|+++.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeee
Confidence 35799999999999999999999999 69999999999997643
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00062 Score=90.92 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=35.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
..+.||+|||+|.|||+||+.++ +|. +|+|+||.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~-~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHL-RVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCC-CEEEEEccCCCCCc
Confidence 34679999999999999999996 488 69999999988884
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=92.82 Aligned_cols=40 Identities=28% Similarity=0.519 Sum_probs=35.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
...+||+|||||++||+||.+|++.|+ +|+|+|. ++||.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~-~v~li~~--~~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL-RTAMVAE--RIGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEec--CCCCcc
Confidence 345899999999999999999999999 6999984 688854
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0002 Score=92.79 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=31.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC---CceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGY---RNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~---~~VtVlEk~~r 56 (2280)
+.+||+|||||++|+++|+.|++.|. .+|+|+|+.+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 35799999999999999999999873 15999999754
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00095 Score=90.38 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=36.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||.|||+||+.++++|. +|+|+||....||.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~~~~g~t 68 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGY-KTACISKLFPTRSHT 68 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEeccCCCCCCc
Confidence 35799999999999999999999998 699999998877743
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=7.8e-05 Score=90.38 Aligned_cols=43 Identities=35% Similarity=0.697 Sum_probs=39.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
..+++.|||||+|||+||..|++.|+ +|.++||+..+|||+..
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiGGrmak 165 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCcccccHHh
Confidence 35789999999999999999999999 59999999999998654
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00045 Score=90.42 Aligned_cols=40 Identities=35% Similarity=0.578 Sum_probs=36.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC-CCCCc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY-HTVGG 59 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~-~riGG 59 (2280)
+.++||+|||||+||+.||+.+++.|. +|+++|++ +.+|+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~~d~iG~ 42 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGA-KTLLLTHNLDTIGQ 42 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCC-cEEEEecccccccc
Confidence 456899999999999999999999999 59999998 57776
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=89.44 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=35.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||.|||+||+.++++|. +|+|+||....||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQ-SCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCCc
Confidence 5799999999999999999999998 69999999888774
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=88.15 Aligned_cols=38 Identities=39% Similarity=0.599 Sum_probs=34.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||+|||+||+.+++.| . |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G-~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG-R-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC-C-EEEEEccCCCCCc
Confidence 369999999999999999999999 4 9999999888774
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00051 Score=93.29 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=35.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||+|||+||+.++++|. +|+|+||....||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGL-RVAVVCKSLFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCC-CEEEEeccCCCCC
Confidence 5799999999999999999999998 6999999987666
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.001 Score=89.42 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=37.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.||+|||+|.+|++||+.++++|. +|+||||...+||.+
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~~~gG~~ 46 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGL-STVVVEKAPHYGGST 46 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCccc
Confidence 5799999999999999999999998 699999999998854
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=87.73 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC-CCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT-VGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r-iGG~ 60 (2280)
.+.||+|||||.|||+||+.+ +.|. +|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~-~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGK-NVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCC-CEEEEEccCCCCCcc
Confidence 357999999999999999999 8998 6999999865 4554
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00074 Score=74.73 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=28.5
Q ss_pred EeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcC
Q 037878 204 HCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISG 242 (2280)
Q Consensus 204 ~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~ 242 (2280)
+.+.+|++|++.++++ .+.+.+| ..+.||+||+|+
T Consensus 119 ~~~~~V~~i~~~~~~~--~v~~~~g--~~~~~d~VvLa~ 153 (156)
T PF13454_consen 119 HVRAEVVDIRRDDDGY--RVVTADG--QSIRADAVVLAT 153 (156)
T ss_pred EEeeEEEEEEEcCCcE--EEEECCC--CEEEeCEEEECC
Confidence 4577999999998876 5566778 578999999983
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0031 Score=73.33 Aligned_cols=47 Identities=40% Similarity=0.718 Sum_probs=39.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC----CCCceEEEecCCC---------CCceEEEEeec
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL----GYRNVTLLEKYHT---------VGGMCESVEIE 67 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~----G~~~VtVlEk~~r---------iGG~~~t~~~~ 67 (2280)
.+.||+|||||.+|+|.|+.|+++ |+ +|+|+|+++. +||-|+.+...
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl-~VvVVErddtytqssT~lSvGGi~QQFSlp 144 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGL-NVVVVERDDTYTQSSTMLSVGGICQQFSLP 144 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCc-eEEEEeccCcccccceeeeecceeeecccc
Confidence 467999999999999999999765 67 6999999874 77877776543
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00014 Score=95.18 Aligned_cols=44 Identities=39% Similarity=0.745 Sum_probs=40.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
..+.+||+|||||++||+||++|++.|+ +|+|+|+++.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCCeee
Confidence 3456899999999999999999999999 6999999999999875
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0004 Score=92.23 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=34.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
..||+|||+|.|||+||..+++ |. +|+|+||....||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EY-NVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CC-CEEEEeccCCCCCCc
Confidence 5799999999999999999976 87 699999999888843
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00011 Score=96.76 Aligned_cols=43 Identities=35% Similarity=0.668 Sum_probs=39.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
+++||+|||||++|++||.+++++|. +|+|+|+++.+||.|-.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL-KVACVEGRSTLGGTCLN 44 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCceeeeecc
Confidence 35899999999999999999999998 69999998899997644
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=82.23 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=38.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCC---CceEEEecCCCCCceEEEEe
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGY---RNVTLLEKYHTVGGMCESVE 65 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~---~~VtVlEk~~riGG~~~t~~ 65 (2280)
++++=|||+|+|+|+||.+|-+.|. ++|+|||+.+..||-+....
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 5688999999999999999987753 37999999999999876654
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=89.07 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=37.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
..+.||+|||||+|||+||+.+++.|. +|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGR-RVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC-eEEEEEccCCCCCc
Confidence 346899999999999999999999998 69999999988773
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00048 Score=92.30 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=38.8
Q ss_pred cCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 14 LHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 14 ~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+......+.||+|||+|.|||+||+.+++.| + |+|+||....||.
T Consensus 22 ~~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~~~gg~ 66 (594)
T PLN02815 22 LDDESTKYFDFLVIGSGIAGLRYALEVAEYG-T-VAIITKDEPHESN 66 (594)
T ss_pred cccCcccccCEEEECccHHHHHHHHHHhhCC-C-EEEEECCCCCCCc
Confidence 4444455689999999999999999999999 5 9999999998884
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00011 Score=97.06 Aligned_cols=43 Identities=37% Similarity=0.736 Sum_probs=39.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
.++||+|||||++|++||++|++.|. +|+|+|+++.+||.|..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERYRNVGGGCTH 46 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccccccccc
Confidence 46899999999999999999999998 69999999999997643
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=93.48 Aligned_cols=44 Identities=34% Similarity=0.483 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh--CCCCceEEEecCCCCCceEEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAK--LGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~--~G~~~VtVlEk~~riGG~~~t 63 (2280)
...++|+|||||+|||+||+.|++ .|+ +|+|||+.+.+||.++.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCCCcceEee
Confidence 346789999999999999999987 788 69999999999996653
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00054 Score=66.16 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=12.9
Q ss_pred eEECCCCEeCCCCEEee
Q 037878 1337 VLIGDGAVISEGALIQS 1353 (2280)
Q Consensus 1337 ~~IG~~~~I~~~~~l~~ 1353 (2280)
..||++|.|++++.|.+
T Consensus 17 s~ig~~~~ig~~~~i~~ 33 (79)
T cd05787 17 SVIGRNCKIGKNVVIDN 33 (79)
T ss_pred cEECCCCEECCCCEEeC
Confidence 45888888888888753
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00069 Score=88.65 Aligned_cols=35 Identities=37% Similarity=0.592 Sum_probs=31.0
Q ss_pred EECccHHHHHHHHHHHhCCCCceEEEecCCC--CCceE
Q 037878 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHT--VGGMC 61 (2280)
Q Consensus 26 IIGaGisGLsAA~~La~~G~~~VtVlEk~~r--iGG~~ 61 (2280)
|||+|++||+||+.++++|. +|+|+||.+. .||..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga-~V~vlEK~~~~~~Gg~s 37 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA-SVLLLEAAPRARRGGNA 37 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC-cEEEEeCCCCCcCCcCc
Confidence 79999999999999999998 6999999884 56643
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00042 Score=93.13 Aligned_cols=41 Identities=24% Similarity=0.481 Sum_probs=36.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||.|||+||+.++++|. +|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF-KVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC-cEEEEEccCCCCCcc
Confidence 35799999999999999999999998 699999998877743
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00021 Score=89.54 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=56.1
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCC-----cEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEE
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDN-----SVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIY 1667 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~-----~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~ 1667 (2280)
..||.||.||++|.|.+. +....|+||+| |+|+.++.|..|+++.++|+||.+.+++++..+|.++..
T Consensus 351 SVIG~~c~IgsN~~I~~S------~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 351 SVIGANCRIGSNVRIKNS------FIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ceecCCCEecCceEEeee------eeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 679999999999988433 34455677776 677888999999999999999999999999888988877
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=87.07 Aligned_cols=40 Identities=33% Similarity=0.384 Sum_probs=35.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
..+.||+|||+|+|||+||+.+++. . +|+|+||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-C-CEEEEeccCCCCCC
Confidence 4467999999999999999999986 6 69999999988884
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0021 Score=86.90 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=36.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.||+|||||.|||+||+.+++.|. +|+|+||....||.+
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~~~~~g~t 51 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGL-SVAVLSKVFPTRSHT 51 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCCCc
Confidence 5799999999999999999999998 699999988877743
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00061 Score=90.17 Aligned_cols=36 Identities=42% Similarity=0.497 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.+.||+|||||++|+++|+.|+++|+ +|+|+||...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcCC
Confidence 45799999999999999999999998 6999999753
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0015 Score=88.33 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=35.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||+|||+||+.++++|. +|+|+||....||.
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~~~~~g~ 88 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFPTRSH 88 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCC-cEEEEEcCCCCCCc
Confidence 4699999999999999999999998 69999999887773
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=99.68 Aligned_cols=44 Identities=34% Similarity=0.724 Sum_probs=39.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
.+.++|+|||||+|||+||++|+++|+ +|+|+|+++.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecccccCcceee
Confidence 356899999999999999999999999 69999999999996643
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00084 Score=90.79 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=35.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||+|||+||+.+++.|. +|+|+||....||.
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~~~~~g~ 50 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGL-KTACITKVFPTRSH 50 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCcc
Confidence 5799999999999999999999998 69999998777663
|
|
| >PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=65.82 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCCccccCCCChhhccc-chHHHHHHHHHHHHHhCCccCcccccC--cccHHHHHHHHHhh
Q 037878 1082 IVEFLKGLVSEQTGIPITKVSATDSLVSYGI-DSIGVVRAAQKLSDFLGVPVGAVDIFT--ATCIADLASFSENL 1153 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGG-dSL~a~~l~~~l~~~~g~~l~~~di~~--~pti~~LA~~l~~~ 1153 (2280)
+++.++++..+.++.+...+..++++|+.|+ |||.++.++..+.++||++++..++-. ..|+..|+++++++
T Consensus 3 i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 3 FKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred HHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 5678899999999887667788999999996 999999999999999999999998888 89999999998764
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=82.33 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=37.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~ 67 (2280)
|+.+.||+|+|-|+.-.-.|-.|++.|. +|+.+|+++.-||...|..++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~Gk-kVLhiD~n~yYGg~~asl~l~ 49 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGK-KVLHIDRNDYYGGEWASLNLD 49 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSSCGGG-EE-HH
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCC-EEEecCCCCCcCCchhcccHH
Confidence 5678899999999999999999999998 699999999999999998744
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00058 Score=69.04 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=30.3
Q ss_pred eEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEEC---CCCEECCCCEECCCCEECcCCccCCCCcc
Q 037878 1337 VLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVG---PYAVIQKGSVIGEEAEVAPLQKSEGGKPI 1404 (2280)
Q Consensus 1337 ~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG---~~~~i~pg~~ig~~a~ig~~s~v~~~~~~ 1404 (2280)
+.||++|.|++++.|.+ ++.||++|.|| .+++|+++++|++++.|+ .+.|.++..+
T Consensus 30 v~IG~~~~Ig~~~~I~~-----------~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg-~siIg~~v~i 88 (101)
T cd05635 30 VYIGPGSRVKMGARIYG-----------NTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLG-HSYLGSWCNL 88 (101)
T ss_pred CEECCCCEECCCCEEeC-----------cCEECCCCEECCEECccEEcCCCEecCcCEEe-eeEECCCCEE
Confidence 45666666666655542 33466666666 455555555555555554 4444444444
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00017 Score=94.53 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=38.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC-CCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT-VGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r-iGG~~~t 63 (2280)
+++||+|||||++|++||.+|++.|+ +|+|+||++. +||.|-.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESKAMYGGTCIN 45 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCCcccceeeec
Confidence 46899999999999999999999998 6999999875 6997643
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=87.55 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=35.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~~ 61 (2280)
+.||+|||||+|||+||+.++++ |. +|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHL-DVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCCCc
Confidence 57999999999999999999987 56 699999999888844
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0006 Score=65.84 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=28.4
Q ss_pred CEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEE
Q 037878 1318 AKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEV 1392 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~i 1392 (2280)
++|++++.|....+ .+.+.||++|.|. ++.+..+..-+...++....|++++.||.++.|.+|++|++++.|
T Consensus 6 ~~I~~~~~i~~s~i--g~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~i 77 (79)
T cd05787 6 TSIGEGTTIKNSVI--GRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVI 77 (79)
T ss_pred CEECCCCEEeccEE--CCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEe
Confidence 44455554432111 2344455555554 344433332222222233334444444444444444444444433
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00066 Score=68.61 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=39.6
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEc---cCCeeCCCcEeCCCcEEc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIG---SQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG---~~~~v~~g~~ig~~~~vg 1650 (2280)
+.||+++.|+..+.+ ...+.||+++.|++++.|. +.+.||++|.|| .++++.++++|++++.|+
T Consensus 12 v~ig~~~~I~~~~~i--~g~v~IG~~~~Ig~~~~I~-----------~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg 78 (101)
T cd05635 12 IYIGKDAVIEPFAVI--EGPVYIGPGSRVKMGARIY-----------GNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLG 78 (101)
T ss_pred EEECCCCEECCCCEE--eCCCEECCCCEECCCCEEe-----------CcCEECCCCEECCEECccEEcCCCEecCcCEEe
Confidence 456666666654322 2236677777777777664 345566666665 455555555555555554
Q ss_pred cCccccCC
Q 037878 1651 ALSVAPMH 1658 (2280)
Q Consensus 1651 ~~s~v~~~ 1658 (2280)
.|.|-.+
T Consensus 79 -~siIg~~ 85 (101)
T cd05635 79 -HSYLGSW 85 (101)
T ss_pred -eeEECCC
Confidence 4444333
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00081 Score=84.65 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=34.0
Q ss_pred ceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc
Q 037878 1360 VLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS 1398 (2280)
Q Consensus 1360 ~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v 1398 (2280)
....+|+.||++|.||.++.|.|+++||+||.||+++.+
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i 294 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI 294 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEE
Confidence 445688999999999999999999999999999997543
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00043 Score=85.97 Aligned_cols=36 Identities=36% Similarity=0.623 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEE-ecCCCCCc
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLL-EKYHTVGG 59 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVl-Ek~~riGG 59 (2280)
||+|||||.||..||+.+++.|. +|+++ ++.+.+|.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~-~V~Lit~~~d~i~~ 37 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGA-KVLLITHNTDTIGE 37 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---EEEEES-GGGTT-
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEeeccccccc
Confidence 89999999999999999999999 59999 66666665
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0002 Score=87.42 Aligned_cols=51 Identities=31% Similarity=0.491 Sum_probs=40.9
Q ss_pred cccccccCCCCCCCCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCCCCCceE
Q 037878 8 DDQFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 8 ~~~~~~~~~~~~~~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~riGG~~ 61 (2280)
++.|.++... .+.||+|||||++||+||++|++. |. +|+|+||+..+||.+
T Consensus 81 ~~~~~~l~~~--~~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~~GGG~ 132 (357)
T PLN02661 81 RRYMTDMITY--ADTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVSPGGGA 132 (357)
T ss_pred HhHhhhhhhc--ccCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCcccccce
Confidence 3345555433 357999999999999999999986 88 699999999998844
|
|
| >PRK07639 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00073 Score=65.79 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHhCCCC-ccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccc--cCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPI-TKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDI--FTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~-~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di--~~~pti~~LA~~l~~~~ 1154 (2280)
.+++.+.++++.++.++.+. +++..+.+|+ +||.||+.++++...+.++||+.++-.++ -.--|++++++++.+..
T Consensus 3 ~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T PRK07639 3 REALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEELQ 82 (86)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHhh
Confidence 45677899999999999975 6899999998 59999999999999999999999998876 46789999999998743
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00073 Score=91.07 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC--CCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G--~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||+|||+||+.+++.| . +|+|+||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNL-KIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCCCh
Confidence 3579999999999999999999874 6 699999998888743
|
|
| >PRK08172 putative acyl carrier protein IacP; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00046 Score=66.40 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
+..+.+.++.++.|+++++.|..+.+|. +||-|||..+.++..+.+.||+.++..++.+-.|++++..++.+..
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~ 78 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSL 78 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHH
Confidence 5678899999999999999999999995 8999999999999999999999999999999999999999998744
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00022 Score=93.59 Aligned_cols=43 Identities=35% Similarity=0.555 Sum_probs=38.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC-CCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH-TVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~-riGG~~~t 63 (2280)
+++||+|||||++|++||++|+++|+ +|+|+|+.+ .+||.|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCCCccceeEee
Confidence 46899999999999999999999998 699999976 48997754
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00022 Score=94.07 Aligned_cols=44 Identities=36% Similarity=0.824 Sum_probs=39.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
|+.++||+|||||++|++||.+|++.|. +|+|+|+++.+||.|.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGL-ETVCVERYSTLGGVCL 44 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCccccccc
Confidence 4457899999999999999999999998 6999999889999663
|
|
| >COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00049 Score=66.41 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1080 KDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1080 ~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
...+..++++..+.|+.++..+..+++|. ++|.|||.++.|...|.+.||+.++..++....|++++++++...
T Consensus 4 ~~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~ 78 (80)
T COG0236 4 EAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEEL 78 (80)
T ss_pred HHHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHh
Confidence 45678899999999999877888899998 599999999999999999999999999999999999999998763
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00018 Score=94.62 Aligned_cols=43 Identities=30% Similarity=0.601 Sum_probs=38.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
+.++||+|||||++|++||.+|+++|+ +|+|+|+. .+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~-~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGA-KVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecc-chhhhhhc
Confidence 346899999999999999999999998 69999995 89996643
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=87.00 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=34.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||+|||+||+.++++ |. +|+|+||.+..++
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~~~~~s 50 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKANIKRS 50 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECCCcCCC
Confidence 47999999999999999999998 98 6999999886544
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=94.03 Aligned_cols=44 Identities=30% Similarity=0.464 Sum_probs=38.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
|+.++||+|||||++|++||.+|++.|+ +|+|+|+. .+||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM-KVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-ccCCceec
Confidence 5567899999999999999999999998 69999995 78886643
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=84.29 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
++||+|||||++|++||+.|+++|. +|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~-~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGK-RVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC-cEEEEECCC
Confidence 5799999999999999999999998 699999863
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00034 Score=88.83 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=37.6
Q ss_pred CCCeEEEECccHHHHHHHHHH-HhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYAL-AKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~L-a~~G~~~VtVlEk~~riGG~~~t 63 (2280)
..++|+|||||+|||+||.+| ++.|+ +|+||||.+.+||.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCccEEEE
Confidence 457899999999999999975 56798 69999999999997765
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00026 Score=93.51 Aligned_cols=43 Identities=30% Similarity=0.589 Sum_probs=38.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
+.++||+|||||++|++||.+|++.|. +|+|+|+ +.+||.|..
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~-~~~GG~c~~ 44 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGL-KTAVVEK-KYWGGVCLN 44 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEec-CCCCCceec
Confidence 346899999999999999999999998 6999998 588997744
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00029 Score=99.84 Aligned_cols=43 Identities=40% Similarity=0.678 Sum_probs=39.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
+.+||+|||||+|||+||++|+++|+ +|+|||+.+.+||.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeec
Confidence 46799999999999999999999999 69999999999997653
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00018 Score=85.18 Aligned_cols=43 Identities=42% Similarity=0.598 Sum_probs=37.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC------CCceEEEecCCCCCceEEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLG------YRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G------~~~VtVlEk~~riGG~~~t 63 (2280)
...||+|||||+||||||++|+|.- + +|.|+||...+||++-|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dl-rVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDL-RVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCce-EEEEEeeccccCCceec
Confidence 4579999999999999999997652 3 69999999999998876
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=90.19 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=35.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||+|||+||..++++|. +|+|+||....+|.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~~~~~s~ 43 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGL-DTIVLSLVPAKRSH 43 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCC-CEEEEeCCCCCCcc
Confidence 5799999999999999999999998 69999998887763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2280 | ||||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 2e-71 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 3e-54 | ||
| 3t5a_A | 480 | Crystal Structure Of N-Terminal Domain Of Faal28 G3 | 6e-43 | ||
| 3e53_A | 480 | Crystal Structure Of N-Terminal Domain Of A Fatty A | 1e-40 | ||
| 3dy5_A | 1066 | Allene Oxide Synthase 8r-Lipoxygenase From Plexaura | 7e-21 | ||
| 1u5u_A | 374 | The Structure Of An Allene Oxide Synthase Reveals A | 1e-20 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 1e-17 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 1e-17 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 1e-17 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 4e-17 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 1e-15 | ||
| 2b9w_A | 424 | Crystal Structure Of Cla-Producing Fatty Acid Isome | 6e-15 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-14 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 4e-12 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 4e-12 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 4e-12 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 9e-12 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-11 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 6e-11 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 8e-11 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 5e-10 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 3e-09 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 3e-09 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 5e-09 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-09 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-08 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-08 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-08 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 3e-08 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 6e-08 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-07 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 3e-07 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 5e-07 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 5e-07 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 5e-07 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 5e-07 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 1e-06 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 2e-06 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 4e-06 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 4e-06 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 8e-06 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-05 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 6e-05 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-04 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 2e-04 | ||
| 1h7x_A | 1025 | Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ter | 3e-04 | ||
| 1h7w_A | 1025 | Dihydropyrimidine Dehydrogenase (Dpd) From Pig Leng | 3e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 3e-04 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 4e-04 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 6e-04 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 7e-04 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 7e-04 |
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066 | Back alignment and structure |
|
| >pdb|1U5U|A Chain A, The Structure Of An Allene Oxide Synthase Reveals A Novel Use For A Catalase Fold Length = 374 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|2B9W|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase From P. Acnes Length = 424 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary Complex Of A Mutant Enzyme (C671a), Nadph And 5- Fluorouracil Length = 1025 | Back alignment and structure |
|
| >pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig Length = 1025 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 607 bits (1568), Expect = 0.0
Identities = 192/607 (31%), Positives = 295/607 (48%), Gaps = 67/607 (11%)
Query: 464 EFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSR 523
E+ + SL ++ H + K T++N+E TYE+LD +A IA L +
Sbjct: 6 EYLQCQSLVDVVRLRALH--SPNKKSCTFLNKELEET--MTYEQLDQHAKAIAATL---Q 58
Query: 524 KPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSC 583
KPGDRVLL++ PGL + AF GC+ A + VP+ PP + L K + I +
Sbjct: 59 AEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ----EKLLDKAQRIVTNS 114
Query: 584 GAVAILSTIGYHSAVR------VGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDL 637
V +L + + +P + +S L + T + +D+
Sbjct: 115 KPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESI-----ELNRSSSWQPTSIKSNDI 169
Query: 638 CFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFT 697
FLQ+TSGST KGVM++H L+ N+ + + +T++ SWLP +HDMGLIG + T
Sbjct: 170 AFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT 229
Query: 698 AMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFD 757
+ GG AI+ SP +F++NPL WL+ ++KY+AT S PNFA++ V+R+ ++K D
Sbjct: 230 PIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRI--REEKKEGLD 287
Query: 758 LSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPII 817
LSS AEPVR+ T++ F + + FG + P YGLAE + V+
Sbjct: 288 LSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKT 347
Query: 818 LDW------QGR--------------VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857
L R V G P +++I++P+T + GE
Sbjct: 348 LTLAKEQFQDHRVHFADDNSPGSYKLVSSGN-----PIQEVKIIDPDTLIPCDF-DQVGE 401
Query: 858 VWISSPSAGIGYWGREELSQITFRNELQN-NRGRKYTRTGDLGRIIDGKFFITGRIKDLI 916
+W+ S S GYW + E ++ F ++++ R Y RTGDLG + + + ++TGRIKDLI
Sbjct: 402 IWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLI 461
Query: 917 IVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV 976
I+ G+N Y D+E ++ S H G CA + EE + L V+ EV
Sbjct: 462 IIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE-------------HEYKLTVMCEV 508
Query: 977 RDGKPVDKD---VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033
++ D + I V E H + V ++ LI + M TTSGKI+R C K +D
Sbjct: 509 KNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568
Query: 1034 TLNTVPE 1040
TL V
Sbjct: 569 TLPIVAT 575
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 447 bits (1152), Expect = e-141
Identities = 135/490 (27%), Positives = 218/490 (44%), Gaps = 60/490 (12%)
Query: 459 ELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWI----NEEGVAVNQSTYEELDANASR 514
+P + SL L+ + FT++ + +GVA+ T+ +L
Sbjct: 14 LVPRGSHMSVRSLPAALRACARLQ--PHDPAFTFMDYEQDWDGVAITL-TWSQLYRRTLN 70
Query: 515 IAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALL 574
+A +L GDRV++ GL++V AF G ++A + VP+ P G
Sbjct: 71 VAQELSR----CGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG----GVTDE 122
Query: 575 KIENISKSCGAVAILSTIGYHSAVR-----VGSWPNLPWLHTDSWVKNSKNLLAENVVCF 629
+ +++ VAIL+T V + D +L A N F
Sbjct: 123 RSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL-----DLDAPNGYTF 177
Query: 630 TESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTS------KTVLVSWL 683
E + +LQ+TSGST GV+++H + N + + Y + + + LVSWL
Sbjct: 178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL 237
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMV 743
P YHDMGL+ G+ ++GG A+L SP++F++ P W+ M+ SA PNFAFEL
Sbjct: 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAA 297
Query: 744 RRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENC 803
RR + D + DL ++ ++ +E V+ T+KRF + F L + V+ P Y LAE
Sbjct: 298 RRT--TDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT 355
Query: 804 VFVSCAYGQGKPIILDW------QGR------------VCCGYVDQNDPDVDIRIVNPET 845
V+V+ + P +D+ G + +RIV+ +T
Sbjct: 356 VYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP----RSPIVRIVDSDT 411
Query: 846 SEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRK----YTRTGDLGRI 901
E + G GE+W+ + GYW + + S+ TF ++ + RTGD G +
Sbjct: 412 CIECPD-GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV 470
Query: 902 IDGKFFITGR 911
DGK FI GR
Sbjct: 471 TDGKMFIIGR 480
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 5e-73
Identities = 93/448 (20%), Positives = 178/448 (39%), Gaps = 65/448 (14%)
Query: 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE---------- 67
+ ++RI I+G GP+GL+ L + G+ + T+LE+ VGG C S
Sbjct: 3 ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIM 62
Query: 68 -------------EAGAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLEL--QD 112
G +++ + + + K V++ +L
Sbjct: 63 GVPSYDTIQEIMDRTGDKVDGPK-LRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLL 121
Query: 113 KAKESGRIGVHAVSDLASDLTPT---YLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYI 169
K G + + DL +L G ++ +TA GYG ++P AY+
Sbjct: 122 ATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCEAARDLWINPFTAFGYGHFDNVPAAYV 181
Query: 170 HEFTRTSMA-----GKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVK 224
++ G + + G ++++ L+ L N ++ I R+ V +
Sbjct: 182 LKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATLEHPAERNVDITRITREDG--KVHIH 239
Query: 225 HSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTID 284
++ + E D ++++ P E D D+ E+E FSK+
Sbjct: 240 TTDWD---RESDVLVLTV----------------PLEKFLDYSDADDDEREYFSKIIHQQ 280
Query: 285 YYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFAD-----TDIFLFWSYGNS 339
Y + P Y + M P +GH + +AD +L ++ +
Sbjct: 281 YMVDACLVKE---YPTISGYVPDNM-RPERLGHVMVYYHRWADDPHQIITTYLLRNHPDY 336
Query: 340 VDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRN 399
D T ++ + +E G +E ++ ++ + YFPHV+S+D K G+Y+++ +QG+RN
Sbjct: 337 ADKTQEECRQMVLDDMETFGHPVEKIIEEQTWYYFPHVSSEDYKAGWYEKV-EGMQGRRN 395
Query: 400 TYYVGGLMAFELTERNSSYSMALMCKHF 427
T+Y G +M+F + YS L+ + F
Sbjct: 396 TFYAGEIMSFGNFDEVCHYSKDLVTRFF 423
|
| >3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 | Back alignment and structure |
|---|
Score = 258 bits (659), Expect = 2e-70
Identities = 91/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%)
Query: 1705 LAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDD 1764
TTLK R H +G G G++TI ++ + P+H+ F G+ +P +RH+N L DD
Sbjct: 54 TLGTTLKGFRRATHTVGTGGIGEITIVNDPK-FPEHEFFTAGRTFPARLRHAN-LKYPDD 111
Query: 1765 ARIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWL-VCGLAAREEHVKR 1823
A DAR +I+ ++ LD+ + TG A ++ V A EE+V +
Sbjct: 112 AGADARSFSIKFADS---DSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAAEEYVYK 168
Query: 1824 VPHIRDAVWKSLR-LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEV 1882
P+ + ++LR D++A ++YYS + F+ DG+ Y +++ P D I E+
Sbjct: 169 NPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESG 228
Query: 1883 EPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDI 1942
+ R +N+ RP +L E+ R+ V Y Q+QI D+
Sbjct: 229 RLTEEEQRKIWIFSRHENEKRPDDYLRKEYVERLQK-GPVNYRLQIQIHEASPDDTAT-- 285
Query: 1943 ALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASI 2002
WD+ +P+ D+ ++SI LS + EK FN + + ++ A + SI
Sbjct: 286 IFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSI 345
Query: 2003 DHGRSLIYEICQHLRNGEPLPES-------WRIFLEQSDVKVDLSGCPMAAAL--EEKTE 2053
R +Y QHLR + + + +E D + + + + +
Sbjct: 346 GELRVAVYTWVQHLRKLKIGSLVPAGQNAIYNVEVETGDREHAGTDATITIRITGAKGRT 405
Query: 2054 DKVTLERTWY 2063
D + L++ ++
Sbjct: 406 DYLKLDKWFH 415
|
| >1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme, eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura homomalla} SCOP: e.5.1.2 Length = 374 | Back alignment and structure |
|---|
Score = 235 bits (600), Expect = 2e-68
Identities = 90/328 (27%), Positives = 147/328 (44%), Gaps = 15/328 (4%)
Query: 1706 AATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDA 1765
TTLK R H +G G G++TI ++ + P+H+ F G+ +P +RH+N L DDA
Sbjct: 55 LGTTLKGFRRATHTVGTGGIGEITIVNDPK-FPEHEFFTAGRTFPARLRHAN-LKYPDDA 112
Query: 1766 RIDARGAAIRIF-SDLNGNTSSLLDLTLKTGNAFYARTIGDFATWL-VCGLAAREEHVKR 1823
DAR +I+ SD +G D+ + TG A ++ V A EE+V +
Sbjct: 113 GADARSFSIKFADSDSDGPL----DIVMNTGEANIFWNSPSLEDFVPVEEGDAAEEYVYK 168
Query: 1824 VPHIRDAVWKSLR-LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEV 1882
P+ + ++LR D++A ++YYS + F+ DG+ Y +++ P D I E+
Sbjct: 169 NPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESG 228
Query: 1883 EPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDI 1942
+ R +N+ RP +L E+ R+ V Y Q+QI
Sbjct: 229 RLTEEEQRKIWIFSRHENEKRPDDYLRKEYVERLQKG-PVNYRLQIQI--HEASPDDTAT 285
Query: 1943 ALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASI 2002
WD+ +P+ D+ ++SI LS + EK FN + + ++ A + SI
Sbjct: 286 IFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSI 345
Query: 2003 DHGRSLIYEICQHLR---NGEPLPESWR 2027
R +Y QHLR G +P
Sbjct: 346 GELRVAVYTWVQHLRKLKIGSLVPAGQN 373
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 235 bits (603), Expect = 6e-67
Identities = 121/561 (21%), Positives = 199/561 (35%), Gaps = 117/561 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY EL+ A R A L + + P +R+LLV + + AF G + A V+PV
Sbjct: 50 TYGELEERARRFAS-ALRTLG--VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANT- 105
Query: 564 DPLQRGGQALLK---IENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
LL + A A++++ V + + V +
Sbjct: 106 ---------LLTPADYVYMLTHSHARAVIASGALVQNVT-QALESAEHDGCQLIVSQPRE 155
Query: 621 LLAENVVCFTE-------------SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM 667
F E + DD+ F ++SGSTG KG + TH L +L
Sbjct: 156 SEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELY 215
Query: 668 RKR-YKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSK 726
K V+ S + GL GL + G+TAIL + +
Sbjct: 216 AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM-AERP--TADAIFARLVE 272
Query: 727 YRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786
+R T G + M+ + + +++ A E + + +RF F
Sbjct: 273 HRPTVFYGVPTLYANMLVS-----PNLPARADVAIRICTSAGEALPREIGERFTAH---F 324
Query: 787 GLSQGVMAPGYGLAE-NCVFVSCAYGQ------GKPIILDWQGRVCCGYVDQNDPDVDIR 839
G + G G E +F+S G G+P+ P +I
Sbjct: 325 GCE---ILDGIGSTEMLHIFLSNRAGAVEYGTTGRPV-----------------PGYEIE 364
Query: 840 IVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLG 899
+ + G+ G+++I PSA + YW E S+ TF E + R+GD
Sbjct: 365 LRDEAGHAV--PDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE--------WIRSGDKY 414
Query: 900 RI-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLST 956
+G + GR D++ V+G+ V +VE +H AV+GV
Sbjct: 415 CRLPNGCYVYAGRSDDMLKVSGQYVSPVEVE---MVLVQH--DAVLEAAVVGVD------ 463
Query: 957 KGISVSDGSDQVGLVVIAEV--RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS 1014
+ A V + + + E +K V + +A K PR +
Sbjct: 464 ---------HGGLVKTRAFVVLKREFAPSEILAEELKAFVKD----RLAPHKY--PRDIV 508
Query: 1015 ------KTTSGKIKRFECLKQ 1029
KT +GKI+RF+ L++
Sbjct: 509 FVDDLPKTATGKIQRFK-LRE 528
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 3e-65
Identities = 114/595 (19%), Positives = 231/595 (38%), Gaps = 95/595 (15%)
Query: 458 EELPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQS-TYEELDANASRIA 516
P + +P++S L + + +K + + + +S + E+ ++A
Sbjct: 9 IGFPSLYYPKIS-LADRIDA-AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLA 66
Query: 517 HKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLK 575
++ + ++ G+ V + +P +D+V + R PVP+ P + K
Sbjct: 67 S-GISRKG--VRKGEHVGV-CIPNSIDYVMTIYALWRVAATPVPINP----------MYK 112
Query: 576 ---IENISKSCGAVAILST-IGYHSAVRVGSWPNLPW-LHTDSWVKNSKNLLAENVVCFT 630
+E+I A ++ + Y + V + V + ++ F
Sbjct: 113 SFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFE 172
Query: 631 E---SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYH 687
+ +D+ + +T G+TG KGVM+TH L N + + +V +P +H
Sbjct: 173 NVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFH 232
Query: 688 DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLE 747
G + + G+ ++ F N + E + KY+ T S A ++ +
Sbjct: 233 SAEF-GLVNLMVTVGNEYVVMGM--F--NQEMLAENIEKYKGTFSWAVPPALNVL---VN 284
Query: 748 SSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV-MAPGYGLAENCVFV 806
+ + +++D S +K A PV V++ ++L + + +G+ E C V
Sbjct: 285 TLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV 344
Query: 807 SC--AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS 864
+ K G D+++++++ E E+G G+ GE+ I P+
Sbjct: 345 TTNPPLRLDKS------T--TQGVP---MSDIELKVISLEDGRELG-VGESGEIVIRGPN 392
Query: 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNV 923
GYW RE+ +Q + + + + + RTGD+G I +G R+K++I G +
Sbjct: 393 IFKGYWKREKENQECWWYDEKGRK---FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449
Query: 924 YSADVEKTVESSTEHIRPGC--CAVIGVP-----EEVLSTKGISVSDGSDQVGLVVIAEV 976
++E + +H AVIG P E +V+
Sbjct: 450 APFELEALL---MKH--EAVMDVAVIGKPDEEAGEVP--------------KAFIVLKPE 490
Query: 977 RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS------KTTSGKIKRFE 1025
GK ++D+IE ++ R ++ K + R + +T SGK+ R
Sbjct: 491 YRGKVDEEDIIEWVRER--------ISGYK--RVREVEFVEELPRTASGKLLRRL 535
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 6e-64
Identities = 117/558 (20%), Positives = 201/558 (36%), Gaps = 116/558 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y EL A A R+A+ L+ ++ GDRV ++ + + +RA + +P+
Sbjct: 30 SYAELVARAGRVANVLVARG---LQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNT- 85
Query: 564 DPLQRGGQALLK---IENISKSCGAVAILSTIGYHSAVR--VGSWPNLPWLHTDSWVKNS 618
++ ++ + +
Sbjct: 86 ---------AYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSL 136
Query: 619 KNLLAENVVCFT--ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSK 676
+ A F + DDL + +TSG+TG +KG M++H L N + ++ T
Sbjct: 137 TDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPD 196
Query: 677 TVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSA 733
VL+ LP YH GL + + I F P L+ M+ RAT
Sbjct: 197 DVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKI-------LDLMA--RATVLM 247
Query: 734 GPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM 793
G + +++ ++ M+ + + P+ T + + T + +
Sbjct: 248 GVPTFYTRLLQS-----PRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLE--- 298
Query: 794 APGYGLAENCVFVSCAYGQ-------GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
YG+ E + S Y G + P V R+ +PET
Sbjct: 299 --RYGMTETNMNTSNPYDGDRVPGAVGPAL-----------------PGVSARVTDPETG 339
Query: 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGK 905
+E+ G G + + P+ GYW E ++ FR++ G + TGDLG+I G
Sbjct: 340 KELP-RGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDD-----G--FFITGDLGKIDERGY 391
Query: 906 FFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSD 963
I GR KDL+I G NVY ++E + PG AVIGVP
Sbjct: 392 VHILGRGKDLVITGGFNVYPKEIESEI---DAM--PGVVESAVIGVPHADF--------- 437
Query: 964 GSDQVGLVVIAEV--RDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMS------ 1014
G V A V G +D V+ + + +A K+ P+ +
Sbjct: 438 -----GEGVTAVVVRDKGATIDEAQVLHGLDGQ--------LAKFKM--PKKVIFVDDLP 482
Query: 1015 KTTSGKIKRFECLKQFVD 1032
+ T GK+++ + + D
Sbjct: 483 RNTMGKVQKNVLRETYKD 500
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 9e-63
Identities = 130/598 (21%), Positives = 217/598 (36%), Gaps = 107/598 (17%)
Query: 460 LPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKL 519
LP + P+ L Y+ K G + TY +++ A R+A L
Sbjct: 13 LPDIYIPKNLPLHSYV--LENLSNHSSKPCLI----NGANGDVYTYADVELTARRVASGL 66
Query: 520 LTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLK---I 576
K I+ GD ++L +FV AF G + P +
Sbjct: 67 ---NKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANP----------FSTPAEL 113
Query: 577 ENISKSCGAVAILST-IGYHSAVRVGSWPNLPWLHTDSWVKNS---KNLLAENVVCFTES 632
+K+ A +++ Y ++ + DS L + +
Sbjct: 114 AKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQV 173
Query: 633 Q--PDDLCFLQFTSGSTGDAKGVMITHGGLIHNV----KLMRKRYKSTSKTVLVSWLPQY 686
PDD+ L ++SG+TG KGVM+TH GLI +V S+ V++ LP +
Sbjct: 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMF 233
Query: 687 HDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAG--PNFAFEL 741
H L + + G+ ++ F + L + KY+ + + P
Sbjct: 234 HIYALNSIMLCGLRVGAPILIMPKFEIGSL-------LGLIEKYKVSIAPVVPP------ 280
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE 801
++ + S D + DLSS++ + P+ + L Q GYG+ E
Sbjct: 281 VMMSIAKSPD-LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ-----GYGMTE 334
Query: 802 NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861
++ K G CG V + +++IV+PET + + GE+ I
Sbjct: 335 AGPVLAMCLAFAKEPFDIKPG--ACGTV---VRNAEMKIVDPETGASLP-RNQPGEICIR 388
Query: 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAG 920
GY E + T E G + TGD+G I D + FI R+K+LI G
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKE-----G--WLHTGDIGYIDDDDELFIVDRLKELIKYKG 441
Query: 921 RNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV-- 976
V A++E + H P AV+G+ +E G V +A V
Sbjct: 442 FQVAPAELEALL---IAH--PEISDAAVVGLKDE--------------DAGEVPVAFVVK 482
Query: 977 RDGKPVD-KDVIENIKTRVVEE---HGVT-VASVKLIKPRTMSKTTSGKIKRFECLKQ 1029
+ ++ + I +V+ V + ++ P K SGKI R LK+
Sbjct: 483 SEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAI----P----KAPSGKILRKN-LKE 531
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 3e-62
Identities = 116/675 (17%), Positives = 222/675 (32%), Gaps = 146/675 (21%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLP 562
+Y EL+ A +A L IKPG+ L V + + FF ++ V PV L
Sbjct: 52 SYRELNQAADNLACSLRRQG---IKPGETAL-VQLGNVAELYITFFALLKLGVAPVLALF 107
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILS-----TIGYHSAVR--VGSWPNLPWLHT--DS 613
+ + + + +++ + V ++ + DS
Sbjct: 108 ---SHQRSE----LNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS 160
Query: 614 WVKNSKNLLAENVVCFT--ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY 671
N ++ + FT S D++ + Q + G+TG K + TH ++V+ +
Sbjct: 161 GEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC 220
Query: 672 KSTSKTVLVSWLPQYHDMGLI-GGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKY 727
+ T +T + +P H+ + G + G T +L S + K+
Sbjct: 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLC-------FPLIEKH 273
Query: 728 RATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFG 787
+ +A A L L++ + L+S+K L V + T R G
Sbjct: 274 QVNVTALVPPAVSLW---LQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE---IG 327
Query: 788 --LSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPET 845
L Q +G+AE V I+ QG C PD ++ + + E
Sbjct: 328 CQLQQ-----VFGMAEGLV-NYTRLDDSAEKIIHTQGYPMC-------PDDEVWVADAEG 374
Query: 846 SEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDG 904
+ G+ G + P GY+ + + F G + +GDL I +G
Sbjct: 375 NPL--PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN-----G--FYCSGDLISIDPEG 425
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR--PGC--CAVIGVPEEVLSTKGIS 960
+ GR KD I G + + ++E + P A++ + +E++
Sbjct: 426 YITVQGREKDQINRGGEKIAAEEIE-------NLLLRHPAVIYAALVSMEDELM------ 472
Query: 961 VSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPR------TM 1013
G A + +P+ V ++ + +A KL P ++
Sbjct: 473 --------GEKSCAYLVVKEPLRAVQVRRFLREQ-------GIAEFKL--PDRVECVDSL 515
Query: 1014 SKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVA 1073
T GK+ + + L+Q++ + + + R E P
Sbjct: 516 PLTAVGKVDKKQ-LRQWLASRASAGRASIPASKAALREVILPLLDESDEPFD-------- 566
Query: 1074 SKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVG 1133
D+L+ YG+DS+ ++ A + + +
Sbjct: 567 ------------------------------DDNLIDYGLDSVRMMALAARWRK-VHGDID 595
Query: 1134 AVDIFTATCIADLAS 1148
V + I
Sbjct: 596 FVMLAKNPTIDAWWK 610
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 5e-62
Identities = 124/550 (22%), Positives = 206/550 (37%), Gaps = 105/550 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLP 562
+Y ELD A R+A I+ DRV+ V +P +F + F R LPV LP
Sbjct: 52 SYRELDTRADRLAAGFQKLG---IQQKDRVV-VQLPNIKEFFEVIFALFRLGALPVFALP 107
Query: 563 PDPLQRGGQALLKIENISKSCGAVAILS-----TIGYHSAVR--VGSWPNLPW---LHTD 612
R + I + A A + Y S R P L
Sbjct: 108 ---SHRSSE----ITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160
Query: 613 SWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK 672
++L E V E + D+ FLQ + GSTG +K + TH I+++K +
Sbjct: 161 EEFLPLEDLHTEPVK-LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW 219
Query: 673 STSKTVLVSWLPQYHDMGL-IGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYR 728
TV ++ LP H+ L G+ + G +L SP + + +
Sbjct: 220 LDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDA-------FPLIEREK 272
Query: 729 ATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFG- 787
T +A + + S + DLSS++ L V +R + FG
Sbjct: 273 VTITALVPPLAMVWMDAASSRR-----DDLSSLQVLQVGGAKFSAEAARRVKAV---FGC 324
Query: 788 -LSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
L Q +G+AE + + II++ QG+ P + R+ +
Sbjct: 325 TLQQ-----VFGMAE-GLVNYTRLDDPEEIIVNTQGKPMS-------PYDESRVWDDHD- 370
Query: 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGK 905
+PG+ G + P GY+ EE + +F + G + RTGD+ R+ DG
Sbjct: 371 -RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED-----G--FYRTGDIVRLTRDGY 422
Query: 906 FFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR--PGC--CAVIGVPEEVLSTKGISV 961
+ GR KD I G V + +VE H+ P A++ +P++ L G
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVE-------NHLLAHPAVHDAAMVSMPDQFL---G--- 469
Query: 962 SDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR------TMSK 1015
++ + +I RD P ++ ++ R +A+ K+ P + +
Sbjct: 470 ----ERSCVFIIP--RDEAPKAAELKAFLRER-------GLAAYKI--PDRVEFVESFPQ 514
Query: 1016 TTSGKIKRFE 1025
T GK+ +
Sbjct: 515 TGVGKVSKKA 524
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 2e-61
Identities = 101/556 (18%), Positives = 192/556 (34%), Gaps = 113/556 (20%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMRAKVLPVPVLP 562
+Y ELD ++ +A +L + GD L V +P +F FF ++A V+ + L
Sbjct: 57 SYIELDRLSTNLATRLAEKG---LGKGDTAL-VQLPNVAEFYIVFFALLKAGVVVLNALY 112
Query: 563 PDPLQRGGQALLK---IENISKSCGAVAILS-----TIGYHSAVR--VGSWPNLPWL--- 609
+ + K ++ + + + +
Sbjct: 113 ----------SHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILML 162
Query: 610 ---HTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL 666
TD + + AE V F+ + D++ F Q + GSTG K + TH ++V+
Sbjct: 163 NHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRA 222
Query: 667 MRKRYKSTSKTVLVSWLPQYHDMGL-IGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLE 722
+ S T L+ LP H+ L G + G ++ PL
Sbjct: 223 SAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNC-------FS 275
Query: 723 TMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVEL 782
+ +++ ++ A + + + K + S+K L V ++ ++ E+
Sbjct: 276 IIQRHQVNMASLVPSAVIMWLEKAAQYK-----DQIQSLKLLQVGGASFPESLARQVPEV 330
Query: 783 TRPFG--LSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRI 840
L Q +G+AE + I QGR D +I+I
Sbjct: 331 ---LNCKLQQ-----VFGMAE-GLVNYTRLDDSDEQIFTTQGRPIS-------SDDEIKI 374
Query: 841 VNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
V+ + G+ G + P GY+ E + F + Y +GDL +
Sbjct: 375 VDEQY--REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDED-----N--YYYSGDLVQ 425
Query: 901 I-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR--PGC--CAVIGVPEEVLS 955
DG + GRIKD I G + S ++E + I P A++ + +E
Sbjct: 426 RTPDGNLRVVGRIKDQINRGGEKIASEEIE-------KLILLHPEVMHAALVAIVDEQF- 477
Query: 956 TKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR---- 1011
G ++ ++ R+ + + ++ +A KL P
Sbjct: 478 --G-------EKSCAFIV--SRNPELKAVVLRRHLMEL-------GIAQYKL--PDQIKL 517
Query: 1012 --TMSKTTSGKIKRFE 1025
++ T GK+ + +
Sbjct: 518 IESLPLTAVGKVDKKQ 533
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 7e-61
Identities = 102/541 (18%), Positives = 182/541 (33%), Gaps = 108/541 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY EL A A A ++ RV + P ++ A + A V VP+
Sbjct: 50 TYAELAAAAGATAGRI--------GGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPK 101
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
++ +I +L+ +G+ +
Sbjct: 102 SGDK----------ELAHILSDSAPSLVLAPPDAELPPALGALERVDVD----------- 140
Query: 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLV 680
+ A V + D + +TSG+TG KG +I L + + ++ T + VLV
Sbjct: 141 VRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLV 200
Query: 681 SWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNF 737
LP +H GL+ G+ + G + FS ++ AT G
Sbjct: 201 QGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGA-------ARELND-GATMLFGVPT 252
Query: 738 AFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGY 797
+ + L + + + L+ + L+ + + +R T + + Y
Sbjct: 253 MYHRIAETLPADPELAK--ALAGARLLVSGSAALPVHDHERIAAAT-GRRVIE-----RY 304
Query: 798 GLAENCVFVSCAY-GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE-EIGEPGKE 855
G+ E + S G+ + G V P V++R+V + + +
Sbjct: 305 GMTETLMNTSVRADGEPRA-----------GTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Query: 856 GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGR-IK 913
GE+ + P+ Y R + + F + G + RTGD+ DG I GR
Sbjct: 354 GEIQVRGPNLFTEYLNRPDATAAAFTED-----G--FFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 914 DLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLV 971
DLI G + + ++E + EH P AV G P+ L G + +
Sbjct: 407 DLIKSGGYKIGAGEIENAL---LEH--PEVREAAVTGEPDPDL---G--------ERIVA 450
Query: 972 VIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMS------KTTSGKIKRF 1024
I P + +++ R +A K PR + + GKI +
Sbjct: 451 WIVPADPAAPPALGTLADHVAAR--------LAPHKR--PRVVRYLDAVPRNDMGKIMKR 500
Query: 1025 E 1025
Sbjct: 501 A 501
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 2e-60
Identities = 115/543 (21%), Positives = 191/543 (35%), Gaps = 102/543 (18%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY +++A A+R A L I GDRV L+ ++F F+G + + VP+
Sbjct: 45 TYAQMNALANRCADVLTALG---IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
L ++ I G+ ++ + T + + +
Sbjct: 102 LAAP----------EVSFILSDSGSKVVIYGAPSAPVID-AIRAQADPPGTVTDWIGADS 150
Query: 621 LL-----AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTS 675
L A E DD F+ +TSG+TG KGV+ TH +
Sbjct: 151 LAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY 210
Query: 676 KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSA 733
+ L+ LP +H L +F+AM G + + F + + R
Sbjct: 211 RDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKV-------WSLIVEERVCIGG 263
Query: 734 GPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM 793
M + + D ++ + P+ + +K + + + Q
Sbjct: 264 AVPAILNFMRQV-----PEFAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQ--- 313
Query: 794 APGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853
GY L E+C + + GR D+ + +
Sbjct: 314 --GYALTESCGGGTLLLSEDALRKAGSAGRAT--------MFTDVAVRGDDGVI---REH 360
Query: 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRI 912
EGEV I S YW R E ++ F N G + RTGD+G I +G +I R+
Sbjct: 361 GEGEVVIKSDILLKEYWNRPEATRDAFDN------G--WFRTGDIGEIDDEGYLYIKDRL 412
Query: 913 KDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGL 970
KD+II G NVY A++E + PG AVIG+P+E G
Sbjct: 413 KDMIISGGENVYPAEIESVI---IGV--PGVSEVAVIGLPDEKW--------------GE 453
Query: 971 VVIAEV--RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS------KTTSGKIK 1022
+ A V + ++ ++E TR +A KL P+ + + +GKI
Sbjct: 454 IAAAIVVADQNEVSEQQIVEYCGTR--------LARYKL--PKKVIFAEAIPRNPTGKIL 503
Query: 1023 RFE 1025
+
Sbjct: 504 KTV 506
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 4e-59
Identities = 110/550 (20%), Positives = 186/550 (33%), Gaps = 116/550 (21%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
T+ + A A R+A LL + GDRV ++ + ++ + +PV
Sbjct: 33 THRDYLARAERLASGLLRDG---VHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR--VGSWPNLPWLHT----DSW 614
L D +I + +++ Y V + S + +
Sbjct: 90 LNAD----------EIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGP 139
Query: 615 VKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST 674
K+L ++ E D + T+ G +G +I+ G L+ + ++ T
Sbjct: 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLT 199
Query: 675 SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHS 732
V + LP +H GL L GG++ I F P + ++ T
Sbjct: 200 EADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQA-------ARDIEAHKVTVM 252
Query: 733 AGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792
A ++ D+ L+S++ + P T++RF
Sbjct: 253 AEFAPMLGNIL-------DQAAPAQLASLRAVTGLDTPE---TIERFEATCPNATFWA-- 300
Query: 793 MAPGYGLAENCVFVSCAYGQGKP--IILDWQGRVCCGYVDQNDPDVDIRIVNPETSE-EI 849
+G +E + A + +P GR + +V+ E
Sbjct: 301 ---TFGQSETSGLSTFAPYRDRPKSA-----GRPL--------FWRTVAVVDAEDRPLPP 344
Query: 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFI 908
GE GE+ + P+ GYW +Q FRN G + TGD+GR DG F
Sbjct: 345 GEV---GEIVLRGPTVFKGYWNNAAATQHAFRN------G--WHHTGDMGRFDADGYLFY 393
Query: 909 TGRI--KDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDG 964
GR K+LI G NVY A+VE + +H P VIGVP+
Sbjct: 394 AGRAPEKELIKTGGENVYPAEVEGAL---KQH--PAIADAVVIGVPDPQW---------- 438
Query: 965 SDQVGLVVIAEV--RDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMS------K 1015
+ A + G+ + + E + + +A K KP+ + K
Sbjct: 439 ----SEAIKAVCVCKPGESIAADALAEFVASL--------IARYK--KPKHVVFVEALPK 484
Query: 1016 TTSGKIKRFE 1025
G I R
Sbjct: 485 DAKGAIDRAA 494
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 8e-58
Identities = 102/545 (18%), Positives = 175/545 (32%), Gaps = 105/545 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPV--- 560
TY+ L AS +A +L RV L + + C A + +
Sbjct: 28 TYQNLYCEASLLAKRLK------AYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 561 LPPDPLQR-----GGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWV 615
L P+ + Q + + + L I + + +
Sbjct: 82 LTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT 141
Query: 616 KNSKNLLAENVVCFTESQ--PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS 673
N + E+ + DD+ + FTSG+TG K V T + ++
Sbjct: 142 SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGF 201
Query: 674 TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATH 731
T +S LP YH GL L + G + I+ F+ L + R TH
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQI-------LTMIKNERITH 254
Query: 732 SAG-PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQ 790
+ P + L + +++ +++ + T ++ ++ P
Sbjct: 255 ISLVPQ-----TLNWLMQQGL----HEPYNLQKILLGGAKLSATMIETALQYNLPI---- 301
Query: 791 GVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG 850
+G+ E C A + D G +VD++I NP
Sbjct: 302 ---YNSFGMTETCSQFLTATPEMLHARPDTVGMPS--------ANVDVKIKNP------- 343
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFIT 909
GE+ I + GY +L+ TF N G Y TGD+ I +G I
Sbjct: 344 NKEGHGELMIKGANVMNGYLYPTDLTG-TFEN------G--YFNTGDIAEIDHEGYVMIY 394
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQ 967
R KDLII G N+Y +E + PG +G P++
Sbjct: 395 DRRKDLIISGGENIYPYQIETVA---KQF--PGISDAVCVGHPDDTW------------- 436
Query: 968 VGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMS------KTTSGK 1020
G V + +I + +A K+ P+ T++GK
Sbjct: 437 -GQVPKLYFVSESDISKAQLIAYLSKH--------LAKYKV--PKHFEKVDTLPYTSTGK 485
Query: 1021 IKRFE 1025
++R +
Sbjct: 486 LQRNK 490
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 1e-57
Identities = 102/548 (18%), Positives = 188/548 (34%), Gaps = 107/548 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ EL A +A +L ++P RV +V D V A R +P + P
Sbjct: 31 THAELRARVEAVAARLHADG---LRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNP- 86
Query: 564 DPLQRGGQALLK---IENISKSCGAVAILSTIGYHSAVRV-GSWPNLPWLHTDSWVKNSK 619
LK + + K A + +G A + S + V++ +
Sbjct: 87 ---------RLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGE 137
Query: 620 NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY--KSTSKT 677
+ + +P F+ +TSG+TG K +I V M + +
Sbjct: 138 PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHN 197
Query: 678 VLVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAG 734
V++ +P YH +G L A+ T ++ F P+ L+ + + + T
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA-------LQLVQQEQVTSLFA 250
Query: 735 PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
+ + ++ S L S++ + A + ++ + P
Sbjct: 251 TPTHLDAL---AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVN---- 302
Query: 795 PGYGLAENCVFVSCAYGQ----GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE-EI 849
YG E + + P ++RIV EI
Sbjct: 303 -IYGTTEAMNSLYMRQPKTGTEMAPG-----------------FFSEVRIVRIGGGVDEI 344
Query: 850 GEPGKEGEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFF 907
G+EGE+ ++ S SA +GY + + + ++ G + RT D+ +G
Sbjct: 345 VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD------G--WYRTSDVAVWTPEGTVR 396
Query: 908 ITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGS 965
I GR+ D+II G N++ +++E+ + PG VIG+ ++
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVL---GTA--PGVTEVVVIGLADQRW----------- 440
Query: 966 DQVGLVVIAEV--RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS------KTT 1017
G V A V R G+ + + + T +A K P+ K
Sbjct: 441 ---GQSVTACVVPRLGETLS---ADALDTFCRSSE---LADFKR--PKRYFILDQLPKNA 489
Query: 1018 SGKIKRFE 1025
K+ R +
Sbjct: 490 LNKVLRRQ 497
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 7e-57
Identities = 103/563 (18%), Positives = 179/563 (31%), Gaps = 121/563 (21%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMR--AKVLPV-PV 560
+Y E + + L + + R+ L +F + V P +
Sbjct: 54 SYAEYLEKSCCLGKAL---QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 561 LPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR--------------VGSWPNL 606
L + S+ V + S +
Sbjct: 111 YTLRELVH--SL--------GISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 607 PWLHTDSWVKNSKNLLAENVVCFTESQ---PDDLCFLQFTSGSTGDAKGVMITHGGLIHN 663
F + + + + +SGSTG KGV +TH ++
Sbjct: 161 RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTR 220
Query: 664 VKLMR---KRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL--FSPLTFIKNPL 718
R + + T +++ +P +H G+ L + G +L F TF
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETF----- 275
Query: 719 LWLETMSKYRATHSAG--PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTV 776
L+T+ Y+ T + L S+ + +DLS++ + P+ +
Sbjct: 276 --LKTLQDYKCTSVILVPT------LFAILNKSEL-LNKYDLSNLVEIASGGAPLSKEVG 326
Query: 777 KRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRV-CCGYVDQNDPD 835
+ G+ Q GYGL E + + + G V P
Sbjct: 327 EAVARRFNLPGVRQ-----GYGLTETTSAIII--------TPEGDDKPGASGKV---VPL 370
Query: 836 VDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRT 895
++++ +T + +G P + GEV + P GY E ++ E G + T
Sbjct: 371 FKAKVIDLDTKKSLG-PNRRGEVCVKGPMLMKGYVNNPEATKELIDEE-----G--WLHT 422
Query: 896 GDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR--PGC--CAVIGVP 950
GD+G + FFI R+K LI G V A++E + P V GVP
Sbjct: 423 GDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE-------SVLLQHPSIFDAGVAGVP 475
Query: 951 EEVLSTKGISVSDGSDQVGLVVIAEV--RDGKPVD-KDVIENIKTRVVE----EHGVT-V 1002
+ G + A V GK + K+V++ + ++V GV V
Sbjct: 476 DP--------------VAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV 521
Query: 1003 ASVKLIKPRTMSKTTSGKIKRFE 1025
V P K +GKI
Sbjct: 522 DEV----P----KGLTGKIDGRA 536
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 8e-57
Identities = 98/559 (17%), Positives = 188/559 (33%), Gaps = 106/559 (18%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMR--AKVLPV-PV 560
TY E + R+A + ++ + R+++ L F G + V P +
Sbjct: 52 TYAEYFEMSVRLAEAM---KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 561 LPPDPLQR------------GGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPW 608
L + L KI N+ K + + + +
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-----QGFQS 163
Query: 609 LHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR 668
++T + V + + + + +SGSTG KGV + H R
Sbjct: 164 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223
Query: 669 ---KRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLET 723
+ T ++S +P +H G+ L + G ++ F F L +
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELF-------LRS 276
Query: 724 MSKYRATHSAG--PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781
+ Y+ + + S + +DLS++ + P+ + + +
Sbjct: 277 LQDYKIQSALLVPT------LFSFFAKSTL-IDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 782 LTRPFGLSQGVMAPGYGLAE-NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRI 840
G+ Q GYGL E + G KP G V + P + ++
Sbjct: 330 RFHLPGIRQ-----GYGLTETTSAILITPEGDDKP-----------GAVGKVVPFFEAKV 373
Query: 841 VNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
V+ +T + +G + GE+ + P GY E + + G + +GD+
Sbjct: 374 VDLDTGKTLG-VNQRGELCVRGPMIMSGYVNNPEATNALIDKD-----G--WLHSGDIAY 425
Query: 901 I-IDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR--PGC--CAVIGVPEEVLS 955
D FFI R+K LI G V A++E + P V G+P++
Sbjct: 426 WDEDEHFFIVDRLKSLIKYKGYQVAPAELE-------SILLQHPNIFDAGVAGLPDD--- 475
Query: 956 TKGISVSDGSDQVGLVVIAEV--RDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIK--P 1010
G + A V GK + K++++ + ++V V + P
Sbjct: 476 -----------DAGELPAAVVVLEHGKTMTEKEIVDYVASQVT-TAKKLRGGVVFVDEVP 523
Query: 1011 RTMSKTTSGKIKRFECLKQ 1029
K +GK+ + +++
Sbjct: 524 ----KGLTGKLDARK-IRE 537
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 6e-56
Identities = 130/603 (21%), Positives = 215/603 (35%), Gaps = 120/603 (19%)
Query: 460 LPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKL 519
LP + P SL Y+ + K G + TY ++ + +IA
Sbjct: 52 LPDIYIPNHLSLHDYI--FQNISEFATKPCLI----NGPTGHVYTYSDVHVISRQIAANF 105
Query: 520 LTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLP---PDPLQRGGQALLKI 576
K + D V+L+ +FV +F P P + + QA
Sbjct: 106 ---HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAK--QA---- 156
Query: 577 ENISKSCGAVAILST-IGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTE---- 631
K+ I++ + + + + D N + E + FTE
Sbjct: 157 ----KASNTKLIITEARYVDKIKPLQNDDGVVIVCIDD---NESVPIPEGCLRFTELTQS 209
Query: 632 ------------SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNV----KLMRKRYKSTS 675
PDD+ L ++SG+TG KGVM+TH GL+ +V S
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 269
Query: 676 KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHS 732
V++ LP +H L + + G+ ++ F LE + + + T +
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL-------LELIQRCKVTVA 322
Query: 733 AG--PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQ 790
P +V + S + +DLSS++ + A P+ + L Q
Sbjct: 323 PMVPP------IVLAIAKSSE-TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375
Query: 791 GVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG 850
GYG+ E ++ + G K G CG V + +++IV+P+T + +
Sbjct: 376 -----GYGMTEAGPVLAMSLGFAKEPFPVKSG--ACGTV---VRNAEMKIVDPDTGDSLS 425
Query: 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFIT 909
+ GE+ I GY + T + G + TGD+G I D + FI
Sbjct: 426 -RNQPGEICIRGHQIMKGYLNNPAATAETIDKD-----G--WLHTGDIGLIDDDDELFIV 477
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQ 967
R+K+LI G V A++E + H P AV+ + EE
Sbjct: 478 DRLKELIKYKGFQVAPAELEALL---IGH--PDITDVAVVAMKEE--------------A 518
Query: 968 VGLVVIAEV--RDGKPVD-KDVIENIKTRVVEE---HGVT-VASVKLIKPRTMSKTTSGK 1020
G V +A V + DV + + +VV + V S+ P K SGK
Sbjct: 519 AGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESI----P----KAPSGK 570
Query: 1021 IKR 1023
I R
Sbjct: 571 ILR 573
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 2e-40
Identities = 106/595 (17%), Positives = 198/595 (33%), Gaps = 147/595 (24%)
Query: 487 KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546
W+N +G + EL N+ + A+ L + ++ GDRV +V ++
Sbjct: 59 SPALWWVNGKG-KELMWNFRELSENSQQAANVLSGACG--LQRGDRVAVVLPRVPEWWLV 115
Query: 547 FFGCMRAKVLPVPV---LPPDPL----QRGGQALL--------KIENISKSCGAVAILST 591
GC+RA ++ +P + + Q + +++ ++ C ++ I
Sbjct: 116 ILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIK-- 173
Query: 592 IGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAK 651
+ V WL+ + A E+ + + FTSG++G K
Sbjct: 174 ------LLVSEKSCDGWLNFKKLLNE-----ASTTHHCVETGSQEASAIYFTSGTSGLPK 222
Query: 652 GVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL-PQYHDM-----------GLIGGLFTAM 699
++ L K+ W Q D+ ++ L
Sbjct: 223 MAEHSYSSLGLKAKMDAG------------WTGLQASDIMWTISDTGWILNILCSLMEPW 270
Query: 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759
G+ + F +PL+ L+T+S Y G + +++ + + S+
Sbjct: 271 ALGACTFVHLLPKF--DPLVILKTLSSYPIKSMMGAPIVYRMLL------QQDLSSYKFP 322
Query: 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ------- 812
++ + E + T++ + T GL + YG E + +
Sbjct: 323 HLQNCVTVGESLLPETLENWRAQT---GLD---IRESYGQTETGLTCMVSKTMKIKPGYM 376
Query: 813 GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEV-----WISSPSAGI 867
G D++I++ + + PG EG++ I
Sbjct: 377 GTAA-----------------SCYDVQIIDDKGNVL--PPGTEGDIGIRVKPIRPIGIFS 417
Query: 868 GYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSA 926
GY + + R + + GD G DG F GR D+I +G + +
Sbjct: 418 GYVDNPDKTAANIRGD--------FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS 469
Query: 927 DVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV--RDG-KP 981
+VE + EH P AVI P+ V G VV A V
Sbjct: 470 EVENAL---MEH--PAVVETAVISSPDPV--------------RGEVVKAFVVLASQFLS 510
Query: 982 VD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMS------KTTSGKIKRFECLKQ 1029
D + + + ++ V A K PR + KT +GKI+R + L+
Sbjct: 511 HDPEQLTKELQQHVKSV----TAPYK--YPRKIEFVLNLPKTVTGKIQRAK-LRD 558
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-33
Identities = 112/591 (18%), Positives = 198/591 (33%), Gaps = 152/591 (25%)
Query: 492 WINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL-DFVDAFFGC 550
W ++ G T+++L + + A+ K I GD V+ + + DF G
Sbjct: 77 WCDDYG-NEKIFTFKDLKYYSDKAANFF---VKHGIGKGDYVM-LTLKSRYDFWYCMLGL 131
Query: 551 MRAKVLPVPV---LPPDPLQ--------------RGGQALLKIENISKSCGAVAILSTIG 593
+ + VP L + +++ CG + +
Sbjct: 132 HKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAK- 190
Query: 594 YHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGV 653
V W+ ++ S + ++ +D+C + F+SG+ G K V
Sbjct: 191 ----VGGDVLEG--WIDFRKELEESSPIFERPTGE-VSTKNEDICLVYFSSGTAGFPKMV 243
Query: 654 MITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHD-------------MGLIGGLFTAMV 700
+ + + T+K D + G L+ +
Sbjct: 244 EHDNTYPLG--------HILTAKYWQ-----NVEDDGLHYTVADSGWGKCVWGKLYGQWI 290
Query: 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSS 760
G ++ F LE SKY T P + ++ K+ + ++ S+
Sbjct: 291 AGCAVFVYDYDRF--EAKNMLEKASKYGVTTFCAPPTIYRFLI------KEDLSHYNFST 342
Query: 761 MKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP---GYGLAENCVFVSCAYGQ----- 812
+K+ +VA EP+ RF+E T G+ G+G E V ++
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFT---GI------KLMEGFGQTETVVTIATFPWMEPKPG 393
Query: 813 --GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS---AGI 867
GKP P I +++ + E G+EGE+ I++ G+
Sbjct: 394 SIGKPT-----------------PGYKIELMDRDGRL--CEVGEEGEIVINTMEGKPVGL 434
Query: 868 --GYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVY 924
Y E ++ T+ + Y TGD+ + DG + GR D+I +G V
Sbjct: 435 FVHYGKDPERTEETWHDG--------YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVG 486
Query: 925 SADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV--RDGK 980
+VE + +H P CA+ GVP+ V G V+ A +
Sbjct: 487 PFEVESAL---IQH--PAVLECAITGVPDPV--------------RGQVIKATIVLTKDY 527
Query: 981 PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS------KTTSGKIKRFE 1025
+ ++ V A K PR + KT SGKI+R E
Sbjct: 528 TPSDSLKNELQDHVKNV----TAPYK--YPRIIEFVPELPKTISGKIRRVE 572
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 3e-21
Identities = 87/451 (19%), Positives = 146/451 (32%), Gaps = 103/451 (22%)
Query: 496 EGVAV---NQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGC 550
+ A QS TY+EL + R A + ++ + +L VY + +F G
Sbjct: 16 QTDAFRSQGQSLTYQELWEQSDRAAAAIQ--KRISGEKKSPIL-VYGHMEPHMIVSFLGS 72
Query: 551 MRA----KVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNL 606
++A +PV P +R I I +S GA ++ G +
Sbjct: 73 VKAGHPY----IPVDLSIPSER-------IAKIIESSGAELLIHAAGLSIDAVGQQIQTV 121
Query: 607 PWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL 666
S + + + ++ +TSGSTG+ KGV I+ L
Sbjct: 122 SAEELLENEGGSVSQDQWV-------KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDW 174
Query: 667 MRKRYKSTSKTVLVSWLPQYH----DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLE 722
+ + + + +L D+ + L+ + G T + + P + E
Sbjct: 175 ICADFPVSGGKI---FL-NQAPFSFDLS-VMDLYPCLQSGGTLHCVTKDA-VNKPKVLFE 228
Query: 723 TMSKYRATHSAGPNF---AFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779
+ K ++ + S+D L M E + + K
Sbjct: 229 ELKKSGLNVW---TSTPSFVQMCLMDPGFSQDL-----LPHADTFMFCGEVLPVSVAKAL 280
Query: 780 VELTRPFGLSQGVMAPGYGLAENCVFVS---CAYGQ---------GKPI------ILDWQ 821
+E + + YG E V V+ G I+D +
Sbjct: 281 LER-----FPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEE 335
Query: 822 GRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFR 881
G+ P GE GE+ I+ PS GY G EL++ F
Sbjct: 336 GQPL--------P--------------EGEK---GEIVIAGPSVSRGYLGEPELTEKAF- 369
Query: 882 NELQNNRGRKYTRTGDLGRIIDGKFFITGRI 912
+ Y RTGD G I DG+ F GR+
Sbjct: 370 --FSHEGQWAY-RTGDAGFIQDGQIFCQGRL 397
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 2e-20
Identities = 87/445 (19%), Positives = 157/445 (35%), Gaps = 90/445 (20%)
Query: 496 EGVAV---NQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGC 550
+ A + TY++L ++ +AH + ++ VY + + F GC
Sbjct: 16 DQTAFVWRDAKITYKQLKEDSDALAHWI---SSEYPDDRSPIM-VYGHMQPEMIINFLGC 71
Query: 551 MRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWP-NLPWL 609
++A +PV P R ++ I+++ GA +LS +AV V P +
Sbjct: 72 VKAGHAYIPVDLSIPADR-------VQRIAENSGAKLLLS----ATAVTVTDLPVRIVSE 120
Query: 610 HTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK 669
+ + N + D+ ++ +TSGSTG+ KGV IT+ L+ K +
Sbjct: 121 DNLKDIFFTHKGNTPNPEH--AVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE 178
Query: 670 RYKSTSKTVLVSWLPQYH----DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMS 725
+ + V +L D+ + ++ ++V G T I P ++
Sbjct: 179 DFNLQTGQV---FL-NQAPFSFDLS-VMDIYPSLVTGGTLWAIDKDM-IARPKDLFASLE 232
Query: 726 KYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785
+ E+ + S+ L +MK + E + ++ +E
Sbjct: 233 QSDIQVWTSTPSFAEMCLMEASFSESM-----LPNMKTFLFCGEVLPNEVARKLIER--- 284
Query: 786 FGLSQGVMAPGYGLAENCVFVSCAYGQ------------GKPI------ILDWQGRVCCG 827
+ + YG E V V+ + G I+ G +
Sbjct: 285 --FPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIA-- 340
Query: 828 YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNN 887
P GE GE+ I PS +GY G EL++ F +
Sbjct: 341 ------P--------------DGEK---GEIVIVGPSVSVGYLGSPELTEKAF---TMID 374
Query: 888 RGRKYTRTGDLGRIIDGKFFITGRI 912
R Y +TGD G + +G F GR+
Sbjct: 375 GERAY-KTGDAGYVENGLLFYNGRL 398
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-18
Identities = 66/437 (15%), Positives = 124/437 (28%), Gaps = 102/437 (23%)
Query: 498 VAV---NQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP-GLDFVDAFFGCMR 552
+ TY +L ++ IA + + VL V+ D + F
Sbjct: 21 PVYDCLGERRTYGQLKRDSDSIAAFI---DSLALLAKSPVL-VFGAQTYDMLATFVA--- 73
Query: 553 AKVLP-----VPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLP 607
+ +PV +R I I + I++ + + +
Sbjct: 74 --LTKSGHAYIPVDVHSAPER-------ILAIIEIAKPSLIIAI--EEFPLTIEGISLVS 122
Query: 608 WLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM 667
+S + V + DD ++ FTSG+TG KGV I+H L+ M
Sbjct: 123 LSEIESAKLAEMPYERTHSV-----KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWM 177
Query: 668 RK--RYKSTSKTVLVSWLPQYH----DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWL 721
+ + + L D+ + + G T + +
Sbjct: 178 IEDAAFDVPKQPQ---ML-AQPPYSFDLS-VMYWAPTLALGGTLFALPKEL-VADFKQLF 231
Query: 722 ETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781
T+++ ++ + + + K + ++ E + +T ++ E
Sbjct: 232 TTIAQLPVGIWTSTPSFADMAMLSDDFCQAK-----MPALTHFYFDGEELTVSTARKLFE 286
Query: 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ------------GKPI------ILDWQGR 823
+ YG E V +S G P I+D G+
Sbjct: 287 R-----FPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGK 341
Query: 824 VCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNE 883
GE GE+ ++ P+ GY E + F
Sbjct: 342 EL--------S--------------SGEQ---GEIIVTGPAVSKGYLNNPEKTAEAF--- 373
Query: 884 LQNNRGRKYTRTGDLGR 900
Y TGD+G
Sbjct: 374 FTFKGQPAY-HTGDIGS 389
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-18
Identities = 86/432 (19%), Positives = 143/432 (33%), Gaps = 90/432 (20%)
Query: 496 EGVAV---NQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCM 551
+ A+ Q+ +Y ELD A+RIA +L +K G V L L+ V G +
Sbjct: 479 DAPALTYSGQTLSYRELDEEANRIARRL---QKHGAGKGSVVALYTKRSLELVIGILGVL 535
Query: 552 RAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWP-NLPWLH 610
+A +PV P P R I + A +L+ + P L
Sbjct: 536 KAGAAYLPVDPKLPEDR-------ISYMLADSAAACLLTH--QEMKEQAAELPYTGTTLF 586
Query: 611 TDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR 670
D + A + T P+D ++ +TSG+TG KG + TH + +
Sbjct: 587 IDD--QTRFEEQASDPA--TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQ-GLVKHVDY 641
Query: 671 YKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRAT 730
+ + +S D + +M+ + I+ T + + + + +
Sbjct: 642 MAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHT-LLDTERLTDLILQENVN 699
Query: 731 HSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQ 790
F L+ E + ++ ++ E V++ + + P L
Sbjct: 700 VMFATTALFNLLTDAGEDW--------MKGLRCILFGGERASVPHVRKALRIMGPGKLIN 751
Query: 791 GVMAPGYGLAENCVFVSCAYGQ-----------GKPI------ILDWQGRVCCGYVDQND 833
YG E VF + GKPI IL+ Q ++
Sbjct: 752 -----CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQ-------- 798
Query: 834 PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQ---IT--FRNELQNNR 888
P G GE+ IS GY R +L++ I F+
Sbjct: 799 P-----------------FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPG----- 836
Query: 889 GRKYTRTGDLGR 900
Y RTGDL R
Sbjct: 837 ETLY-RTGDLAR 847
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 2e-18
Identities = 78/431 (18%), Positives = 132/431 (30%), Gaps = 83/431 (19%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY++L+ A+++A+ + + + + L G M++ VP+
Sbjct: 57 TYKKLNETANQVANLI---IHASLHG-RAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAG 112
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
P R + + A ++ V P L T +
Sbjct: 113 LPNDR-------KSFLLRDSRAAMAFVC--DNNFDGVELPPETKVLDTKNQSFIENLSTQ 163
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLV--- 680
+ + +L +TSGSTG KGV ++ L K + + L
Sbjct: 164 DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGG 223
Query: 681 --SWLPQYH----DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG 734
+L D+ IG +F A G A+ L+ + + L T + TH+
Sbjct: 224 VGKFL-CLASRAFDVH-IGEMFLAWRFGLCAVTGERLS-MLDDL--PRTFRELGVTHAGI 278
Query: 735 PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
+ E D + +L V E + T + + R +
Sbjct: 279 VPSLLDQTGLVPE---------DAPHLVYLGVGGEKMTPRTQQIWSSSDRV------ALV 323
Query: 795 PGYGLAENCVFVSCAYGQ--------GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
YG E + S G P+ D ++ P +
Sbjct: 324 NVYGPTEVTIGCSAGRILPDSDTRCIGHPL-----------------GDSVAHVLAPGS- 365
Query: 847 EEIGEP---GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII- 902
E G GE+ I GY R + F N + Y RTGD+ R+
Sbjct: 366 ---NEHVKKGMAGELVIEGSLVANGYLNRPDAKG--F---CDINGRKMY-RTGDIVRMDA 416
Query: 903 DGKF-FITGRI 912
D F+ GR
Sbjct: 417 DSSILFL-GRK 426
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 2e-18
Identities = 79/439 (17%), Positives = 142/439 (32%), Gaps = 110/439 (25%)
Query: 496 EGVAV---NQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCM 551
VA+ N+ TY EL+ A+++A + I V ++ +D
Sbjct: 54 NNVAIVCENEQLTYHELNVKANQLARIF---IEKGIGKDTLVGIMMEKSIDLFIGILA-- 108
Query: 552 RAKVLP-----VPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWP-N 605
VL VP+ P +R I+ I A +L+ + +
Sbjct: 109 ---VLKAGGAYVPIDIEYPKER-------IQYILDDSQARMLLTQKHLVHLIHNIQFNGQ 158
Query: 606 LPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK 665
+ D+ N+ S+ DL ++ +TSG+TG+ KG M+ H G+ +
Sbjct: 159 VEIFEEDTIKIRE----GTNLH--VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKV 212
Query: 666 LMRKRYKSTSKTVLVSWLPQYH----DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWL 721
T K Q+ D + +F A++ G++ + T I + + +
Sbjct: 213 FFENSLNVTEKDR---IG-QFASISFDAS-VWEMFMALLTGASLYIILKDT-INDFVKFE 266
Query: 722 ETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781
+ +++ T P + + S++ L+ A + V ++ E
Sbjct: 267 QYINQKEITVITLPPTYVVHLDPE-----------RILSIQTLITAGSATSPSLVNKWKE 315
Query: 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ----------GKPI------ILDWQGRVC 825
YG E + + G PI I+D ++
Sbjct: 316 KVTYINA--------YGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLK 367
Query: 826 CGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI----GYWGREELSQITFR 881
+GE GE+ I G GYW R EL+ F
Sbjct: 368 --------S--------------VGEA---GELCI----GGEGLARGYWKRPELTSQKFV 398
Query: 882 NELQNNRGRKYTRTGDLGR 900
+ + Y +TGD R
Sbjct: 399 DNPFVPGEKLY-KTGDQAR 416
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 4e-17
Identities = 80/346 (23%), Positives = 131/346 (37%), Gaps = 69/346 (19%)
Query: 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN--VKLMRKRYKSTSKTVLVSWLPQY 686
E + + T+G+TG KGV+ +H L+ + + + K V++ +P +
Sbjct: 173 VPERAACGMAY---TTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229
Query: 687 HDMGLIGGL-FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVR 744
H L + A + G+ +L P + L E T +AG P + +
Sbjct: 230 HVNA--WCLPYAATLVGAKQVL--PGPRLDPASLV-ELFDGEGVTFTAGVPTV-WLALAD 283
Query: 745 RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV-MAPGYGLAENC 803
LES+ L +++ L+V ++ + RF + GV + GYGL E
Sbjct: 284 YLESTG-----HRLKTLRRLVVGGSAAPRSLIARFERM--------GVEVRQGYGLTETS 330
Query: 804 VFVSCAYGQGKPIILDW---------QGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP-- 852
V + + L G V +R+ + E G P
Sbjct: 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL--------VRLRVADEE-----GRPVP 377
Query: 853 --GKE-GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFI 908
GK GEV + P GY+G EE ++ + G + RTGD+ +G I
Sbjct: 378 KDGKALGEVQLKGPWITGGYYGNEEATRSALTPD-----G--FFRTGDIAVWDEEGYVEI 430
Query: 909 TGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG--CCAVIGVPEE 952
R+KDLI G + S D+E + H P AV+ +P
Sbjct: 431 KDRLKDLIKSGGEWISSVDLENAL---MGH--PKVKEAAVVAIPHP 471
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 8e-16
Identities = 46/269 (17%), Positives = 87/269 (32%), Gaps = 42/269 (15%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE------EAGAE 72
+ IVG G +GLS AY LA G+ VT+LE GG + E G
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPGGRVRTYRNEEAGWYANLGPM 89
Query: 73 ---------LEEMDSHKLALI------DGSTGEFQDIKV----ADDYVSVISLTLELQDK 113
E + L L D + ++I+ ++ ++ +
Sbjct: 90 RLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEA 149
Query: 114 AKESGRIGVHAVSDLASDLTPT----------------YLEDRGFKSVPKSVAYGYTASG 157
K +G++ ++ + +L T YL G S G +
Sbjct: 150 GKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE 209
Query: 158 YGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDST 217
+ + + G L + + + +VH N++V+ I+++
Sbjct: 210 DSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQ 269
Query: 218 TVGVDVKHSNGECEVMEFDKIIISGAFPV 246
V V + + E + D +I+
Sbjct: 270 KVTVVYETLSKETPSVTADYVIVCTTSRA 298
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 3e-15
Identities = 64/429 (14%), Positives = 126/429 (29%), Gaps = 93/429 (21%)
Query: 498 VAV---NQS-TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRA 553
A+ S Y +L +A +++ L + +PG + + + + + +
Sbjct: 44 EAIRDRFGSVDYRQLLDSAEQLSDYL---LEHYPQPGVCLGVYGEYSRESITCLLAILLS 100
Query: 554 KVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDS 613
+ + P + + IL + P +P H +
Sbjct: 101 GHHYLYIDLKQPAAW-------NAELCRQVDCRLILDC--STTPTPANGLPCVPVRHLPA 151
Query: 614 WVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS 673
A D + ++ F+SG+TG K + TH G+ +
Sbjct: 152 AP-------ASVAR--PCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCL-GQSFLAF 201
Query: 674 TSKTVLVSWLPQYHDMG---LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRAT 730
+ +L + ++ A++ G +L +P + + + + A
Sbjct: 202 APQMR---FL-VNSPLSFDAATLEIWGALLNGGCCVLNDLGP--LDPGVLRQLIGERGAD 255
Query: 731 HSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQ 790
+ F +V L ++ L+ + + V+R + +
Sbjct: 256 SAWLTASLFNTLVDLDPDC--------LGGLRQLLTGGDILSVPHVRRALLR-----HPR 302
Query: 791 GVMAPGYGLAENCVFVSC-------AYGQ----GKPI------ILDWQGR-VCCGYVDQN 832
+ GYG EN F C GK I +LD G+ +
Sbjct: 303 LHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIA------- 355
Query: 833 DPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITF-RNELQNNRGRK 891
EP + GE+ GY ++ +F + R
Sbjct: 356 ------------------EPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRA 397
Query: 892 YTRTGDLGR 900
Y RTGD R
Sbjct: 398 Y-RTGDRAR 405
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 1e-12
Identities = 81/590 (13%), Positives = 172/590 (29%), Gaps = 165/590 (27%)
Query: 1 MDPGKSIDDQFCKLHPCLPVN-----TRIGIVGGGPSGLSTAY--ALAKLGYRNVTLLEK 53
+ + + +F + L +N + I PS ++ Y +L Y + + K
Sbjct: 72 LSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAK 128
Query: 54 YHTVGGMCESVEIEEAGAELEEMDSHKLALIDG--STGEFQDIKVADDYVSVISLTLE-L 110
Y+ V + +++ +A L E+ K LIDG +G K + + L+
Sbjct: 129 YN-VSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSG-----K------TW--VALDVC 171
Query: 111 QDKAKESGR-IGVHAVSDLASDLTPT----YLEDRGFKSVPKSVAYGYTASGYGFVQDMP 165
+ + ++ L + +P L+ ++ P + D
Sbjct: 172 LSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRS----------DHS 220
Query: 166 YAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKH 225
S+ +L + L ++ + N L + +V++
Sbjct: 221 SNIKLRI----------------HSIQAELRRLLKSKPYENC--LLVLL-------NVQN 255
Query: 226 SNGECEVME-FD---KIII-----SGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKEL 276
+ + F+ KI++ + + + T DE++ L
Sbjct: 256 A----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVK-SL 306
Query: 277 FSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYM-DDPATIGH------------------ 317
K L L P E + D AT +
Sbjct: 307 LLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 318 ---PVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYF 374
P +K F +F S I PT ++L +
Sbjct: 365 VLEPAEYRKMFDRLSVFP-----PSAHI--PT------------------ILLSLIWFDV 399
Query: 375 PHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSMALMCKH--FANNYS 432
+ + + + E Q + +T + + + + Y++ H ++Y+
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-----HRSIVDHYN 454
Query: 433 TPEFPYVKNLFPLQSDNW-----------ARNFKELEELPGVEFPELSSLDGYLKHWGTH 481
P+ +L P D + + + + V F + L+ ++H T
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTA 513
Query: 482 RITQKKTLFTWIN----EEGVAVNQSTYEE----LDANASRIAHKLLTSR 523
L T + + N YE + +I L+ S+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-08
Identities = 57/429 (13%), Positives = 131/429 (30%), Gaps = 88/429 (20%)
Query: 1651 ALSVAPMHSVLQR--GGIY---IGS-QSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSAN 1704
AL V + V + I+ + + SP + + L +I+ N+
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 1705 LAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHP--GKCYPVIV--RHSNSLS 1760
+ + +++ + + L + N+Q + K ++ C +++ R
Sbjct: 227 IHSIQAELRRLLKSKPYENC---LLVLLNVQ---NAKAWNAFNLSC-KILLTTR------ 273
Query: 1761 ADDDARIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAA-REE 1819
D AA L+ ++ +L +L C E
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTP----------DEVKSLLLKYLDCRPQDLPRE 321
Query: 1820 HVKRVP--------HIRD--AVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLR 1869
+ P IRD A W + + + + + + ++M+ + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 1870 PYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVS-----SPSGVRY 1924
P I P ++ D ++ + ++ + S
Sbjct: 382 PPSAHI-------------PTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTIS 427
Query: 1925 IFQLQIR---PIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQ--------NLST-E 1972
I + + + + A+ +D + D+ +DQ +L E
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPK--TFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 1973 ESEKLEFNP--YLKCNEIDV-IPATTSSQSASIDHGRSL----IYE--ICQHLRNGEPLP 2023
E++ +L ++ I +++ +AS +L Y+ IC + E L
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 2024 ESWRIFLEQ 2032
+ FL +
Sbjct: 546 NAILDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 2e-07
Identities = 78/556 (14%), Positives = 157/556 (28%), Gaps = 178/556 (32%)
Query: 1681 HALDDRIEEMDMKYKKIVGNLSANLAATTLKVKSRYFHRIGVSGRGQLT--IYDNIQGLP 1738
H +D E +YK I+ V + + + L+ D+I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAF------VDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 1739 DHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSSLLDLTLKTGNAF 1798
D + R+F L
Sbjct: 59 -----------------------DAVSGTL------RLF-----------WTLLSKQEEM 78
Query: 1799 YARTIGDFA----TWLVCGLAA--REEHVKRVPHI--RDAVWKSLRLSDSYAEMHYYSNI 1850
+ + + +L+ + R+ + +I RD ++ ++ Y N+
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-------NV 131
Query: 1851 CRLFRFTDGQEMYVK-----FKLRPYDESI------GEDSGEVEPRGILPPETGAIPRDD 1899
RL + Y+K +LRP +++ G SG + + +
Sbjct: 132 SRL-------QPYLKLRQALLELRP-AKNVLIDGVLG--SG----KTWV---ALDVCLS- 173
Query: 1900 NDTRPLLFLADEFQRRVSSPSGVRYI-FQLQIRPIPQDEAMQDIALDCTKPWDE-AEYPY 1957
+ Q + + ++ + P E +Q + W +++
Sbjct: 174 ----------YKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1958 IDVGEISIDQNLSTEESEKLEF---NPYLKCNEI--DV--------------IPATTSSQ 1998
+I + + ++E PY C + +V I TT +
Sbjct: 222 ------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 1999 SASIDHGRSLIYEICQ-HLRNGEPLPESWRIFLEQSDVKV-DL-----SGCPMAAAL--E 2049
+ + I H E + L+ D + DL + P ++ E
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 2050 EKTEDKVTLERTW----YQTLWSIFAQPL--LQTVL--PYFLIGLVIFTPLKWTLFLKEN 2101
+ T + W L +I L L+ F L +F P
Sbjct: 336 SIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVF-P-------PSA 385
Query: 2102 KILPLHWLLPMFW------VSSGILAALACAAAKWVLVGKKKEGESVQIWSKGVLMDTVW 2155
I P LL + W ++ L K+ LV K+ + ++ I + ++
Sbjct: 386 HI-PTI-LLSLIWFDVIKSDVMVVVNKL----HKYSLVEKQPKESTISIP--SIYLELKV 437
Query: 2156 QAF------RTLVGEY 2165
+ R++V Y
Sbjct: 438 KLENEYALHRSIVDHY 453
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-05
Identities = 93/643 (14%), Positives = 189/643 (29%), Gaps = 162/643 (25%)
Query: 830 DQND-PDVDIRIVNPETSEEI-GEPGKEGEV----WI--SSPSAGIGYWGREELSQITFR 881
D D D+ I++ E + I W S EE+ Q
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---------EEMVQKFVE 84
Query: 882 NELQNNRGRKYT--RTGDLGRIIDGKFFITGRIK---DLIIVAGRNVYSADVEKTVESST 936
L+ N + +T + + +I R + D + A NV + +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 937 EHIRP----------GC---CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD 983
+RP G + +V + + ++ + +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKV-QCKMDFKIFWLNLKNCNS----P 195
Query: 984 KDVIENIKTRVVE-EHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG--TLNTVPE 1040
+ V+E ++ + + + T S + + +++R K + + L V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 1041 PLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITK 1100
K +F CK T R + V+ +++ ++ + L ++
Sbjct: 256 A-----KAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------ 303
Query: 1101 VSATDSLVSY-GIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKSQP 1159
L+ Y + R + P + I A I D + +N +
Sbjct: 304 ---KSLLLKYLDCRPQDLPREVLTTN-----PR-RLSII-AESIRDGLATWDNWKHVNCD 353
Query: 1160 QLMT--DSSFTPEPETD----FDEF-----DMEVSKARQCGIWIFQLLALVYVSVMLILP 1208
+L T +SS + FD + IW ++ VM+++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW----FDVIKSDVMVVVN 409
Query: 1209 AYLSVS-----AFTTLVSAPQTLLDERPWLNYMFSLTFAPLAWILCIFATCISITIFGNS 1263
S + +S P L+ + L ++L +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----------------------HR 447
Query: 1264 FLRPNYTLNPEVSIWSADFVK-----WWALYKVHEVSCKVLA--VYLRGTVFLNWWFEML 1316
+ +Y + D + ++ + H + + L VFL+ F L
Sbjct: 448 SIVDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFL 503
Query: 1317 GAKL--------GSSVLLDTVD--------ITDPSLVLIGDGAVISEGALIQSHEVKNGV 1360
K+ S +L+T+ I D ++ + N +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------------NDPKY---ERLVNAI 548
Query: 1361 LSFQPIKIARKVSVGPY------AVIQKGSVIGEEAEVAPLQK 1397
L F P KI + Y A++ + I EEA +Q+
Sbjct: 549 LDFLP-KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ-VQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-05
Identities = 87/574 (15%), Positives = 156/574 (27%), Gaps = 169/574 (29%)
Query: 1075 KKMSNKDIVEFLKGLVSEQ-----TGIPITKVSAT----DSLVSYGIDSIG--VVRAAQK 1123
KD+ + K ++S++ VS T +L+S + + V +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1124 LSDFLGVPVGAVDIFTATCIADLASFSENL-VMKSQPQLMTDSSFT-PEPETDFDEFDME 1181
FL P+ + + E + + Q+ + + +P
Sbjct: 90 NYKFLMSPIKTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSRLQP---------- 136
Query: 1182 VSKARQCGIWIFQLLALVYVSV--MLILPAYLSVSAF--TTLVSAPQTLLDERP------ 1231
K RQ + +L V + +L T + L +
Sbjct: 137 YLKLRQ---ALLELRPAKNVLIDGVL---------GSGKTWVAL--DVCLSYKVQCKMDF 182
Query: 1232 ---WLNYMFSLTFAPLAWILCIFATCISITIFGNSFLRPNYTLNPEVSI-WSADFVKWWA 1287
WLN +P + + I N R +++ N ++ I ++
Sbjct: 183 KIFWLN--LKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 1288 LYKVHEVSCKVLA-VYLRGTVFLNWW----FEMLGAKLGSSVLLDTVD--ITD------- 1333
K +E VL V N F L +LL T +TD
Sbjct: 239 KSKPYENCLLVLLNVQ-------NAKAWNAFN-----LSCKILLTTRFKQVTDFLSAATT 286
Query: 1334 --PSLVLIGDGAVISE--GALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEE 1389
SL E L++ + + L + + P + S+I E
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----VLTTN--PRRL----SIIAES 336
Query: 1390 AEVAPLQKSEGGKPILKSTNANYVQKGGAVSKISTHRTQDEAIHQFIGIYIVSFLSTLSA 1449
+T N+ + + I S L+ L
Sbjct: 337 IRDGL------------ATWDNWKH------------VNCDKLTTIIE----SSLNVLEP 368
Query: 1450 AITYFLYIWLSQKPAS---PRHFAFLCISGAFHWL------PFTIIAYATMFASVPANPA 1500
A ++ LS P S P L + W ++ ++ V P
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPT--ILLSL----IWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1501 YFAISTAVAYLFHGLVLSYLT----------CILTHFLAGKKEEKQTHLKA-----WLCH 1545
IS + L I+ H+ K + + + H
Sbjct: 423 ESTIS------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 1546 RITIACHLRFAKLLSGTEAF-CIYL--RLLGAKI 1576
I HL+ + F ++L R L KI
Sbjct: 477 ---IGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 43/269 (15%), Positives = 82/269 (30%), Gaps = 49/269 (18%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG--------MCESVE-------- 65
+ +VGGG SG++ A L G NV +LE VGG + V+
Sbjct: 5 CDVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP 63
Query: 66 --------IEEAGAELEEMDS---------HKLALIDGSTGEFQDIKVADDYVSVISLTL 108
+E G E +++ K G + D+ +
Sbjct: 64 TQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMD 123
Query: 109 ELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYG-------FV 161
++ + + + L+ + K +A + +
Sbjct: 124 DMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSAL 183
Query: 162 QDMPYA----YIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDST 217
+ Y T+ G+ R+F GG + +++ L V V+ I +
Sbjct: 184 WFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRE 243
Query: 218 TVGVDVKHSNGECEVMEFDKIIISGAFPV 246
V V+ N E+ E +I + +
Sbjct: 244 --NVLVETLNH--EMYEAKYVISAIPPTL 268
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-12
Identities = 51/256 (19%), Positives = 88/256 (34%), Gaps = 32/256 (12%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE-----EAGAE- 72
P ++ I+G G +GL A L + G ++ +LE VGG ++V + GA
Sbjct: 6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASW 65
Query: 73 --------LEEMDSHKLALIDGSTGEFQD-----------IKVADDYVSVISLTLELQDK 113
L +L+L DG T D +V D ++ + K
Sbjct: 66 HHDTLTNPLFLE-EAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDNEMSK 124
Query: 114 AKESGRIGVHAVSD--LASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHE 171
E VSD + L+ R F + + + + +
Sbjct: 125 FAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSA 184
Query: 172 FTRTSMAGKIRRFKGGYTSLWQKLSKYLPTE-VHCNSEVLAIRRDSTTVGVDVKHSNGEC 230
F Y S+ Q++++ P + + EV +I R+ + V V +G
Sbjct: 185 KDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSK-NVTVNCEDG-- 241
Query: 231 EVMEFDKIIISGAFPV 246
V D +II+ V
Sbjct: 242 TVYNADYVIITVPQSV 257
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 9e-12
Identities = 50/273 (18%), Positives = 85/273 (31%), Gaps = 49/273 (17%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE----EAGA--- 71
V R+ +VG G SG+S A L++ G ++ +LE +GG E GA
Sbjct: 2 TVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWV 61
Query: 72 -ELEEMDSHKLALIDGSTGEFQDIKVADDYVS--------------VISLTLELQDKAKE 116
+ + + I ST + ++ + DY++ + +EL D +E
Sbjct: 62 EGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEE 121
Query: 117 SGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVA---------------YGYTASGYGFV 161
G + D R + P A +
Sbjct: 122 MGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQ 181
Query: 162 QDMPYAYIHEFTRTSM--------AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIR 213
+P A +F + G Y K K + + N V I+
Sbjct: 182 NTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIK 241
Query: 214 RDSTTVGVDVKHSNGECEVMEFDKIIISGAFPV 246
GV VK + V D +++S + V
Sbjct: 242 YSPG--GVTVKTEDN--SVYSADYVMVSASLGV 270
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-11
Identities = 41/288 (14%), Positives = 87/288 (30%), Gaps = 64/288 (22%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLE----------------KYHTVGGMCESV 64
+ + ++GGGP+GL +A+ L K GY VT+LE + + G +
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGY-KVTVLEARTRPGGRVWTARGGSEETDLSGETQKC 69
Query: 65 E-----------------------IEEAGAELEEM-DSHKLALIDGSTGEFQDIKVADDY 100
E G E++ + + ++ + +
Sbjct: 70 TFSEGHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYR 129
Query: 101 VSVISLTLELQDKAKESGRIGV--HAVSDLASDLTPTYLEDRGFKSVPK----------- 147
+ + + K++ G +S D +L D G S
Sbjct: 130 AAKADTFGYMSELLKKATDQGALDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYD 189
Query: 148 -----SVAYGYTASGYGFVQDMPYAYIHEF---TRTSMAGKIRRFKGGYTSLWQKLSKYL 199
+ +G + + + F A + GG ++ +
Sbjct: 190 SEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRI 249
Query: 200 PTE-VHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPV 246
T+ + +EV +++ S V V+ G + + D I + +
Sbjct: 250 GTDNIVFGAEVTSMKNVSEGVTVEYTA-GGSKKSITADYAICTIPPHL 296
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 5e-11
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68
+I I+G GP+GL A L +LGY+N L E T GG+ S E
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDEN 56
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 7e-11
Identities = 45/259 (17%), Positives = 81/259 (31%), Gaps = 59/259 (22%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE----EAGA------- 71
R +VG G GL LA+ G+ + +LEK +GG ++ + GA
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHE-IIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHG 60
Query: 72 ----------------ELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAK 115
E+ + L +G Y L +++KAK
Sbjct: 61 EDGPLAHLLRILGAKVEIVNSNPKGKILWEGKI---------FHYRESWKF-LSVKEKAK 110
Query: 116 ESGRIGVHAVSDLASD-------LTPTYLEDRGFKSVPKSVA-YGYTASGYGFVQDMPYA 167
+ ++ L + + E+ SV +S A + + S
Sbjct: 111 ALKLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAK 170
Query: 168 YIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPT---EVHCNSEVLAIRRDSTTVGVDVK 224
I G +GG ++ +L + + ++ EV+ I + V
Sbjct: 171 EIR---AALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKKVYT--- 224
Query: 225 HSNGECEVMEFDKIIISGA 243
+ E FD + IS
Sbjct: 225 -RDN--EEYSFD-VAISNV 239
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 44/271 (16%), Positives = 92/271 (33%), Gaps = 48/271 (17%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE----EAGAE-- 72
+ + IVG GPSGL+ A AL K G +V ++E VGG + I+ E G +
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
Query: 73 -------LEEMDSHKLAL-------------IDGSTGEFQDIKVADDYVSVISLTLELQD 112
+ +D L G + + + + + +
Sbjct: 62 SPDQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDE 121
Query: 113 KAKESGRIGVHA------VSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPY 166
+ +IG DL + +L ++ + + + A G +
Sbjct: 122 MDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSF 181
Query: 167 AYIHEFTRTSMAGKI-----------RRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRD 215
+ + + AG +R GG + ++++ L +V N+ V ++ +
Sbjct: 182 SALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWN 241
Query: 216 STTVGVDVKHSNGECEVMEFDKIIISGAFPV 246
+ G V +E ++I++ +
Sbjct: 242 ES--GATVLADGD--IRVEASRVILAVPPNL 268
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 2e-10
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE----EAGAE 72
R+ ++G G SGL+ AY L G VT+ E GG SV + + GA
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLN-VTVFEAEGKAGGKLRSVSQDGLIWDEGAN 67
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 72/361 (19%), Positives = 126/361 (34%), Gaps = 100/361 (27%)
Query: 694 GLFTAMVG--------GSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVR 744
GLFT +G G + S ++ + + P++ L
Sbjct: 146 GLFTGGLGIHYGAERLGCMVVPMSGG----QTEKQVQLIRDFEPKIILVTPSYMLNL--- 198
Query: 745 RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF-----VELTRPFGLSQGVMAPGYGL 799
++ + SS+K + AEP Q ++ +GLS+ VM PG
Sbjct: 199 -IDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE-VMGPG--- 253
Query: 800 AENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859
V C + P+I W+ Y + I++P T E + G +GE+
Sbjct: 254 ----VACECVETKDGPVI--WEDHF---YPE---------IIDPVTGEVL-PDGSQGELV 294
Query: 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI----------IDGKFFIT 909
+S +E + I +R T DL + + IT
Sbjct: 295 FTS-------LTKEAMPVIRYR-------------TRDLTALLPPTARAMRRLAK---IT 331
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVG 969
GR D++IV G NV+ + +E+ V + + G + LS G D++
Sbjct: 332 GRSDDMLIVRGVNVFPSQIEEIVVALPL--------LSGQFQITLSRDG-----HMDRLD 378
Query: 970 LVVIAEVRDGKPVDKD------VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
L V E+R + ++ R+ GV+ V ++ + T +GK +R
Sbjct: 379 LAV--ELRSEAAASVTDGERAALARELQHRIKTMVGVSSG-VTVLAAGGIPATATGKARR 435
Query: 1024 F 1024
Sbjct: 436 V 436
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 72/359 (20%), Positives = 125/359 (34%), Gaps = 99/359 (27%)
Query: 694 GLFTAMVG--------GSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVR 744
GLFT +G G T I F ++ + +R P++ +
Sbjct: 144 GLFTGGLGAHYGAERAGLTVIPFGGG----QTEKQVQLIQDFRPDIIMVTPSYMLSI--- 196
Query: 745 RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF-----VELTRPFGLSQGVMAPGYGL 799
+ + + SS++ + AEP ++ +GLS+ VM PG
Sbjct: 197 -ADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE-VMGPG--- 251
Query: 800 AENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859
V C + P I W+ Y + I++PET E + G+ GE+
Sbjct: 252 ----VASECVETKDGPTI--WEDHF---YPE---------IIDPETGEVL-PDGELGELV 292
Query: 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI----------IDGKFFIT 909
+S +E L I +R T DL R+ ++ IT
Sbjct: 293 FTS-------LTKEALPIIRYR-------------TRDLTRLLPGTARTMRRMEK---IT 329
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVG 969
GR D++IV G NV+ +E+ + + + VL+ +G D
Sbjct: 330 GRSDDMMIVRGVNVFPTQIEEQLLKQRA--------LAPHYQIVLTKEG-----PLDV-- 374
Query: 970 LVVIAEVRDGKPVDKDVIENIKTRVVEE----HGVTVASVKLIKPRTMSKTTSGKIKRF 1024
L + E D I+ K + + GVT + ++ + ++ GK +R
Sbjct: 375 LTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAV-INVLPVNGIERSV-GKARRV 431
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-10
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
+ +I ++G GP+ +S A LA+LGY ++T+ EK VGG+
Sbjct: 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL 226
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 4e-10
Identities = 37/271 (13%), Positives = 76/271 (28%), Gaps = 44/271 (16%)
Query: 629 FTESQPDDLCFLQF-TSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL---P 684
+ P D + + G+TG K V+ + + Y+ + L P
Sbjct: 84 VPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIP 143
Query: 685 QY-HDMGLIGGLFTAMVGGST-AILFSPLTFIK----------------NPLLWLETMSK 726
H +G I +GG +I P + T+
Sbjct: 144 TGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMN 203
Query: 727 YRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786
+++R E V S+ + + + +K P
Sbjct: 204 QDIRFLVTTPPVLRELLKRPE-----VVLQMKQSLAQITLGGTELNLDEIKFIASEILP- 257
Query: 787 GLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
+ YG A G + +++ + + D P + +V+ T+
Sbjct: 258 ---DCEFSASYGSTS-------ALGVSRSLLITSESQQV--IYDSFSPFITYDVVDSITA 305
Query: 847 EEIGEPGKEGEVWISSPSAG---IGYWGREE 874
+ + G+ G V ++ S R+
Sbjct: 306 QTVE-YGERGNVIVTHLSPWAFYPRVAERDT 335
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 7e-10
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE----EAG 70
H + +VGGG SGL+ A+ L G LLE +GG + + E G
Sbjct: 10 HMPRTTGMNVAVVGGGISGLAVAHHLRSRGTD-AVLLESSARLGGAVGTHALAGYLVEQG 68
Query: 71 AE 72
Sbjct: 69 PN 70
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 8e-10
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKYHTVGGMCESVEIE----EAGAE 72
+ R+ IVGGG +GL+ AY + N+TLLE +GG + + E G +
Sbjct: 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPD 60
|
| >3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 8e-10
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68
+ + ++G GP+GL A L ++ + +++ T GG+ + E
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPE 57
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 74/360 (20%), Positives = 134/360 (37%), Gaps = 97/360 (26%)
Query: 694 GLFTAMVG--------GSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVR 744
G+FT +G G + + N ++ +S ++ T P++A L
Sbjct: 140 GMFTGGLGFQYGAERLGCLTVPAAAG----NSKRQIKFISDFKTTALHAIPSYAIRL--- 192
Query: 745 RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF-----VELTRPFGLSQGVMAPGYGL 799
E +++ +++K L++ AEP ++ V+ FG+++ + PG
Sbjct: 193 -AEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTE-MNGPG--- 247
Query: 800 AENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859
V C G D V+ I++PET E + G+ GE+
Sbjct: 248 ----VAFECQEQNGMHFWEDCY------LVE---------IIDPETGEPV-PEGEIGELV 287
Query: 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGK----------FFIT 909
+++ RE + I +R T DL RI+ GK I
Sbjct: 288 LTT-------LDREMMPLIRYR-------------TRDLTRILPGKCPCGRTHLRIDRIK 327
Query: 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVG 969
GR D+ I+ G N++ VEK + E + L T D+
Sbjct: 328 GRSDDMFIIKGVNIFPMQVEKILVQFPE--------LGSNYLITLETVN-----NQDE-- 372
Query: 970 LVVIAEVRDGKPVDKDVIENIKTRVVEE----HGVTVASVKLIKPRTMSKTTSGKIKRFE 1025
++V E+ D + +E I+ ++ + VT VKL+K ++ ++ GK R +
Sbjct: 373 MIVEVELSDLSTDNYIELEKIRRDIIRQLKDEILVTPK-VKLVKKGSLPQSE-GKAVRVK 430
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 2e-09
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKYHTVGGMCESVEIE-----EAGAE 72
+ ++GGG SGL+ +Y L++ V L+E +GG SV E G
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPR 59
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 48/260 (18%), Positives = 78/260 (30%), Gaps = 45/260 (17%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE-------EAGAE------ 72
+VGGG SGL A L G V LLE +GG S E E G
Sbjct: 6 VVGGGFSGLKAARDLTNAGK-KVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKH 64
Query: 73 ----LEEMDSHKLALID-----------GSTGEFQDIKVADDYV-SVISLTLELQDKAKE 116
E+D + + G T Q + +V + T L A
Sbjct: 65 HPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHR 124
Query: 117 SGRIGVHAVSDLASDLTP--TYLEDRGFKSVPKSVAYGYTASGYG-------FVQDMPYA 167
DL P Y++ V + + + G + +
Sbjct: 125 IDLEKGLENQDLEDLDIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLV 184
Query: 168 YIHEFTRTS-MAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHS 226
H ++ + F G L +S+ +P E+ + V I + V+V
Sbjct: 185 AAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGD--VVNVTVK 241
Query: 227 NGECEVMEFDKIIISGAFPV 246
+G + +I++
Sbjct: 242 DG--HAFQAHSVIVATPMNT 259
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A Length = 88 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 19/81 (23%), Positives = 34/81 (41%)
Query: 1069 SSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFL 1128
S + S +DI +L ++Q + + +S +Y ++S + +L +L
Sbjct: 2 SHMKTIQPASVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWL 61
Query: 1129 GVPVGAVDIFTATCIADLASF 1149
G + V IF IA LA
Sbjct: 62 GKELNPVLIFNYPTIAQLAKR 82
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 4e-09
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYR-----NVTLLEKYHTVGGMCESVEIE----EAGAE 72
+ I+GGG +GL+ A+ + K +TL+E VGG ++V+ + E G +
Sbjct: 7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPD 65
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} Length = 212 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 10/89 (11%), Positives = 32/89 (35%)
Query: 1061 RTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRA 1120
P S +++ + +FL+ ++ ++ + G+DS+ +
Sbjct: 6 HHHHHSSGLVPRGSHMVADDECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQW 65
Query: 1121 AQKLSDFLGVPVGAVDIFTATCIADLASF 1149
++++ + + A I+T +
Sbjct: 66 IREINKHYQLKIPADGIYTYPVFKAFTQW 94
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} Length = 212 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 1030 FVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGL 1089
+ + + T+ + T++ +E PQ P A + I ++LK
Sbjct: 83 YTYPVFKAFTQWVGTQLQPTQATAAPVQREPVATAPQ----PGAQASAQRESIQDYLKQS 138
Query: 1090 VSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASF 1149
+ E + ++ + + G+DS+ + + +S + + A I+T + LA
Sbjct: 139 LGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADE 198
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-08
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
+ ++ + IVG G G STA LA+ GY NVT+L+ Y +
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAI 45
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 8e-08
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAG 70
IVG G SG LA+ G++ V ++++ +GG E
Sbjct: 8 IVGAGFSGAVIGRQLAEKGHQ-VHIIDQRDHIGGNSYDARDSETN 51
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-07
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67
IVG G G A L KL + V ++EK + +GG + + E
Sbjct: 6 IVGSGLFGAVCANELKKLNKK-VLVIEKRNHIGGNAYTEDCE 46
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* Length = 688 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 65/345 (18%), Positives = 104/345 (30%), Gaps = 81/345 (23%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN---SLSADDDARIDAR 1770
R H G G T Y + L GK P+ R S S + D AR D
Sbjct: 60 RAVHARGTGAHGTFTSYGDWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTAR-DVH 118
Query: 1771 GAAIRIFSDLNGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKR 1823
G A R ++D GN D+ GN F+ + D H VK
Sbjct: 119 GFATRFYTD-EGN----FDIV---GNNIPVFFIQDAILFPDLI------------HAVKP 158
Query: 1824 VP--HIRDA------VWK--SLR---------------LSDSYAEMHYYSNICRLFRFTD 1858
I A W S + + S+ ++ + D
Sbjct: 159 RGDNQIPQAATAHDSAWDFFSQQPSVLHTLLWAXAGHGIPRSFRHVNGFGVHTFRLVTDD 218
Query: 1859 GQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSS 1918
G+ VKF + + E + D F + + + +
Sbjct: 219 GKTKLVKFHWKG----------LQGKASFVWEEAQQTAGKNAD-----FXRQDLFQSIQA 263
Query: 1919 PSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEK 1976
+ +QI LD TK E P +G++ +++N E+E+
Sbjct: 264 GRFPEWELGVQIMQEQDQLKFGFDLLDPTKIVPEELVPVTILGKMQLNRNPXNYFAETEQ 323
Query: 1977 LEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEP 2021
+ F P ++ ++ + GR Y Q R+G P
Sbjct: 324 VMFQPG------HIVRGVDFTEDPLL-QGRLFSYLDTQLNRHGGP 361
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 7e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58
+VG G GL+ AY L +V +++ H G
Sbjct: 28 VVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG 60
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-07
Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 44/256 (17%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG-------------MCESV----- 64
+ +VG GP+GL+ A A G++ VTL + + +GG E++
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQ-VTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRR 433
Query: 65 EIEEAGAELE---EMDSHKLALID------GSTGEFQDIKVADDYVSVISLTLELQDKAK 115
IE G L+ + + +L D G I D V+S L+DKA
Sbjct: 434 MIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDH-PKVLSYLDVLRDKAP 492
Query: 116 ESGR--------IGVHAVSDLA-SDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPY 166
+ IG L+ + + + +P
Sbjct: 493 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPR 552
Query: 167 AYIHEFTRTSMAGKIRRFKGGYTSLWQKLS-KYLPTEVHCNSEVLAIRRDSTTVGVDVKH 225
+ A K + G T + + ++ I D G+ V
Sbjct: 553 SPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDD----GLHVVI 608
Query: 226 SNGECEVMEFDKIIIS 241
NGE +V+ D ++I
Sbjct: 609 -NGETQVLAVDNVVIC 623
|
| >3e4w_A Putative uncharacterized protein; heme enzyme, catalase, peroxidase, oxidoreductase; HET: HEM; 1.80A {Mycobacterium avium subsp} PDB: 3e4y_A* Length = 320 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 51/309 (16%), Positives = 89/309 (28%), Gaps = 95/309 (30%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSN---SLSADDDARI 1767
+ R H G RG T + L G P ++R SN + D A
Sbjct: 28 QPGCRALHAKGTLYRGTFTATRDAVMLSAAPHL-DGSTVPALIRFSNGSGNPKQRDGAP- 85
Query: 1768 DARGAAIRIFSDLNGNTSSLLDLTLKTGNA----FYARTIGDFATWLVCGLAAREEH-VK 1822
RG A++ +G+T + T F L ++
Sbjct: 86 GVRGMAVKFTLP-DGST----TDV---SAQTARLLVSSTPEGFIDLL---------KAMR 128
Query: 1823 RVPHIRDAVWK--SLR----------LSD-----SYAEMHYYSNICRLFRFT--DGQEMY 1863
+ SYA Y+ FR+ DG +
Sbjct: 129 PGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGL--HAFRWIAADGSARF 186
Query: 1864 VKFKLRP--------YDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRR 1915
V++ L P ++ G+D P+ D+ L +
Sbjct: 187 VRYHLVPTAAEEYLSASDARGKD-----------PDFL---TDE------LAARLQ---- 222
Query: 1916 VSSPSG-VRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--E 1972
G VR+ F++QI ++ +D + W + VG ++I +
Sbjct: 223 ----DGPVRFDFRVQI--AGPTDST----VDPSSAWQ--STQIVTVGTVTITGPDTEREH 270
Query: 1973 ESEKLEFNP 1981
+ + F+P
Sbjct: 271 GGDIVVFDP 279
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} Length = 89 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 1072 VASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLG-- 1129
+A + + ++ + +VSE++GI + +++ + GIDS+ + + + LG
Sbjct: 2 MAKGVGVSNEKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLD 61
Query: 1130 VPVGAVDIFTATCIADLASF 1149
+ T + L F
Sbjct: 62 LGPEFSLFIDCTTVRALKDF 81
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 2e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68
IVG G +G A LA G R V ++++ +GG +
Sbjct: 34 IVGAGFAGSVLAERLASSGQR-VLIVDRRPHIGGNAYDCYDDA 75
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
LP + I ++GGG G++ A+ LAK G VT++EK
Sbjct: 2 LPEKSEIVVIGGGIVGVTIAHELAKRG-EEVTVIEK 36
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ IVG GPSG A L + GY V L + +GG
Sbjct: 391 SVLIVGAGPSGSEAARVLMESGYT-VHLTDTAEKIGG 426
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
I+G G +G+ A L G +V +LEK TVG
Sbjct: 9 IIGAGAAGIGMAITLKDFGITDVIILEK-GTVGH 41
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
R+ +VG GPSGL A AL GY V L E +GG
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYD-VVLAEAGRDLGG 428
|
| >1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A* Length = 503 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-06
Identities = 58/296 (19%), Positives = 104/296 (35%), Gaps = 83/296 (28%)
Query: 1726 GQLTIYDNIQGLPDHKIFHPGKCYPVIVRHS----NSLSADDDARIDARGAAIRIFSDLN 1781
G+ + +++ +F PG ++R S S D R D RG A+R +++
Sbjct: 69 GEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDT-WR-DVRGFALRFYTE-E 125
Query: 1782 GNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKRVP--HIRDA-- 1830
GN DL GN F+ R F KR+P +RDA
Sbjct: 126 GN----YDLV---GNNTPIFFLRDPMKFTHFI------------RSQKRLPDSGLRDATM 166
Query: 1831 VWK--SLR----------LSD-----SYAEMH-YYSNICRLFRFT--DGQEMYVKFKLRP 1870
W + + ++ EM+ Y S+ + + G++ +VK+
Sbjct: 167 QWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHT---YLWVNAQGEKHWVKYHFIS 223
Query: 1871 YDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSGVRYIFQL 1928
G + E I ++ D + L F + + P + +
Sbjct: 224 -------QQGV---HNLSNDEATKIAGENADFHRQDL-FESIA---KGDHPK---WDLYI 266
Query: 1929 QIRPIPQDEAMQDI-ALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
Q P ++ D TK + +YP I VG +++++N + E F+P
Sbjct: 267 QAIP-YEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSP 321
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 6e-06
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEK-----YHTVGGMCESVEIEEAGAELEEMD 77
I+GGGP+G L KLG+ VT+ E+ Y VG ES+ + + L +
Sbjct: 28 IIGGGPAGSVAGLTLHKLGHD-VTIYERSAFPRYR-VG---ESL-LPGTMSILNRLG 78
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSH 79
+VG G GL+ A +A + V +LE+ +GG S + G E+ + +H
Sbjct: 12 VVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAH 65
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC--------ESVEIEEAGAELEEMD 77
+VG G +GLS AY ++K V ++E+ + GG + + A L+E+
Sbjct: 44 VVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIG 103
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY---HTVGG 59
+ + + +VGGGP GL+TA+ +A+ G+R V +LE++ + GG
Sbjct: 1 MTESYDVVVVGGGPVGLATAWQVAERGHR-VLVLERHTFFNENGG 44
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
+ RI I+G G G + A L G+ N+T+L++
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQ 36
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYH----TVGGMCESVEIEEAGAELEEMD 77
++G GP+G A + K G++ V ++EK +G ES+ + L+E
Sbjct: 10 VIGAGPAGTVAASLVNKSGFK-VKIVEKQKFPRFVIG---ESL-LPRCMEHLDEAG 60
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLEK 53
P + IVGGG GL+TAY LAK G NV +LEK
Sbjct: 16 PEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEK 54
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ ++G G GL +A L+K G+ V + E+ GG
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHE-VEVFERLPITGG 37
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 1573 GAKIGRYCSI-------RAINPVSCPQQVTLGAGVHLGDFSRIIPGFY--------SSIG 1617
IG Y I + + + + G
Sbjct: 70 KVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKN 129
Query: 1618 FIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654
GKV ++ + +IG+ S++ PN V+ V +GA+S+
Sbjct: 130 VKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSM 166
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 1570 RLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFS----RIIPGFYSSIG---FIF-- 1620
++ +G+ I + P +++G V + DF ++ G YS I ++
Sbjct: 29 KIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGG 88
Query: 1621 -GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIG 1669
+E+ D + I S+++V L ++ + ++ G + +
Sbjct: 89 EVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILK 138
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 36/284 (12%), Positives = 75/284 (26%), Gaps = 58/284 (20%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE----EAGA 71
+ ++GGG GL+ L G++ LLE +GG S I+ E G
Sbjct: 34 TDKDGPWDVIVIGGGYCGLTATRDLTVAGFKT-LLLEARDRIGGRSWSSNIDGYPYEMGG 92
Query: 72 E---------LEEMDSHKLALIDGSTGEFQ------------DIKVADDYVSVISLTLEL 110
E+ +K+ + F + + L
Sbjct: 93 TWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSA 152
Query: 111 QDKAKESGRIGVHAVSDLASDLTPT-------------YLE---------DRGFKSVPKS 148
K V D+ ++ +R
Sbjct: 153 LHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFIL 212
Query: 149 VAYGYTASGYGFVQDMPYAYIHEFTRTSMAGKI--RRFKGGYTS----LWQKLSKYLPTE 202
+ G T F + + + + +T + +FK G ++ W++ +
Sbjct: 213 LCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLG 272
Query: 203 VHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPV 246
V ++ + V +G +++ + V
Sbjct: 273 YVFGCPVRSVVNERD--AARVTARDG--REFVAKRVVCTIPLNV 312
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGA 71
I I G G GLS A AL + G VTLLE S EI G
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIGKVTLLES---------SSEIRPLGV 45
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEK 53
++GGGP G + A +A G+R V LLE+
Sbjct: 12 VIGGGPGGSTLASFVAMRGHR-VLLLER 38
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
+ + ++GGG G + AY LAK +N L E
Sbjct: 12 RAMKRHYEAVVIGGGIIGSAIAYYLAKEN-KNTALFES 48
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKY 54
I+G G G + Y + G V + + +
Sbjct: 7 IIGSGSVGAAAGYYATRAGLN-VLMTDAH 34
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIG 1632
AKI + + N + +G+FS + G G V++ N +G
Sbjct: 107 KAKIEKGVIL---NT-----SSVIEHECVIGEFSHVSVGAK-----CAGNVKIGKNCFLG 153
Query: 1633 SQSLVLPNSVVSRDVILGALSV 1654
S VLPN ++ D ILG +
Sbjct: 154 INSCVLPNLSLADDSILGGGAT 175
|
| >2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora} Length = 102 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 2e-05
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 1068 VSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVS-YGIDSIGVVRAAQKLSD 1126
++ + + +E ++ LV+E+ +P+ + + + SI V + + +
Sbjct: 1 MARADDTALPAATGALELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAAR 60
Query: 1127 FLGVPVGAVDIFTAT-CIADLASFSENLVMKSQPQL 1161
+G+ A+ AT + ++A E + P L
Sbjct: 61 AMGLSAVAMPTNFATATVREMAEALEARE-REAPHL 95
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGA 71
R + GGG +GL+ A AL + G+ V L EK E+ GA
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWD-VRLHEKSS---------ELRAFGA 51
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 2e-05
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY-HTVGGMCESVEIEEAGAE 72
RI IVG G +GL L + G+ +VT+LE + VGG ++ ++
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGH-DVTILEANANRVGGRIKTFHAKKGEPS 95
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 32/138 (23%)
Query: 895 TGDLG--RIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVP 950
+GD G R DG ++ITGR+ D++ V+G + +A++E + H P AV+G+P
Sbjct: 498 SGD-GARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAH--PKIAEAAVVGIP 551
Query: 951 EEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIK- 1009
+ KG Q + + G+ ++ ++ V +E G +A+ ++
Sbjct: 552 HAI---KG--------Q-AIYAYVTLNHGEEPSPELYAEVRNWVRKEIG-PLATPDVLHW 598
Query: 1010 ----PRTMSKTTSGKIKR 1023
P KT SGKI R
Sbjct: 599 TDSLP----KTRSGKIMR 612
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-05
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Query: 24 IGIVGGGPSGLSTAYALAKLGY-RNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLA 82
+ IVG G SGLS AY +AK V ++E GG + + + L
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQ 127
Query: 83 LIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESG--RIGVHAVSDLASDLTPTYLEDR 140
++ + D V + + ++ L + V DL + E
Sbjct: 128 ELEIPYEDEGDYVVVKH--AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVT 185
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 3e-05
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 24 IGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGMC 61
I IVG G GLS AY L+ L R +T++E GG
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLR-ITIVEAGVAPGGGA 120
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRN------VTLLEKYHTVGGM 60
I IVG GPS A +L K V +LE T G+
Sbjct: 5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL 48
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} Length = 688 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 72/314 (22%), Positives = 109/314 (34%), Gaps = 92/314 (29%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN---SLSADDDARIDAR 1770
R H G G T Y + + K PV VR S S + D AR D
Sbjct: 68 RVVHARGAGAHGIFTSYGDWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADTAR-DVH 126
Query: 1771 GAAIRIFSDLNGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKR 1823
G A R ++D GN D+ GN F+ + D H VK
Sbjct: 127 GFATRFYTD-EGN----FDIV---GNNIPVFFIQDAIRFPDLI------------HSVKP 166
Query: 1824 VP--HIRDA------VWK--SLR----------LSD-----SYAEMH-YYSNICRLFRF- 1856
P + A W S + +S SY M + + FR
Sbjct: 167 SPDNEVPQAATAHDSAWDFFSSQPSALHTLFWAMSGNGIPRSYRHMDGFGIHT---FRLV 223
Query: 1857 -TDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDT-RPLLFLADEFQR 1914
DG+ VK+ + G+ ++ E + + D R L+ A E
Sbjct: 224 TEDGKSKLVKWHWKT-------KQGK---AALVWEEAQVLAGKNADFHRQDLWDAIE--- 270
Query: 1915 RVSSPSGV--RYIFQLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNL 1969
SG + +Q+ I +D+A D+ LD TK E P +GE+++++N
Sbjct: 271 -----SGNAPSWELAVQL--IDEDKAQAYGFDL-LDPTKFLPEEFAPLQVLGEMTLNRNP 322
Query: 1970 ST--EESEKLEFNP 1981
E+E++ F P
Sbjct: 323 MNYFAETEQISFQP 336
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEK 53
I+GGG +G S AY L++ G + + L++
Sbjct: 11 IIGGGFAGSSAAYQLSRRGLK-ILLVDS 37
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... Length = 753 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-05
Identities = 72/314 (22%), Positives = 113/314 (35%), Gaps = 92/314 (29%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN---SLSADDDARIDAR 1770
R H G + G Y ++ + P K PV VR S + D R D R
Sbjct: 125 RIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVR-DIR 183
Query: 1771 GAAIRIFSDLNGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKR 1823
G A + +++ G DL GN F+ + DF H VK
Sbjct: 184 GFATKFYTE-EGI----FDLV---GNNTPIFFIQDAHKFPDFV------------HAVKP 223
Query: 1824 VP--HIRDA------VWK--SLR----------LSD-----SYAEMH-YYSNICRLFRF- 1856
P I W SL+ +SD SY M + + FR
Sbjct: 224 EPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHT---FRLI 280
Query: 1857 -TDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDT-RPLLFLADEFQR 1914
+G+ +V+F +P +G+ ++ E + D D R L+ A E
Sbjct: 281 NAEGKATFVRFHWKP-------LAGK---ASLVWDEAQKLTGRDPDFHRRELWEAIE--- 327
Query: 1915 RVSSPSGV--RYIFQLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNL 1969
+G Y Q+ IP+++ + D+ LD TK E P VG++ +++N
Sbjct: 328 -----AGDFPEYELGFQL--IPEEDEFKFDFDL-LDPTKLIPEELVPVQRVGKMVLNRNP 379
Query: 1970 ST--EESEKLEFNP 1981
E+E+ F+P
Sbjct: 380 DNFFAENEQAAFHP 393
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-05
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+G++G GP+GL+ A L GY V + ++Y +GG
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYDRMGG 159
|
| >2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta} Length = 509 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 66/298 (22%), Positives = 112/298 (37%), Gaps = 86/298 (28%)
Query: 1726 GQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS----NSLSADDDARIDARGAAIRIFSDL 1780
G + D+I + K GK + R S SAD AR D RG A + +++
Sbjct: 75 GVFEVTDDITDVCSAKFLDTVGKKTRIFTRFSTVGGEKGSADT-AR-DPRGFATKFYTE- 131
Query: 1781 NGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKRVP--HIRDA- 1830
+GN LDL N F+ R F H KR P +++D
Sbjct: 132 DGN----LDLV---YNNTPIFFIRDPIKFPHFI------------HTQKRNPATNLKDPN 172
Query: 1831 -VWK--SLR----------LSD-----SYAEMHYYSNICRLFRFT--DGQEMYVKFKLRP 1870
W + S+ SY M+ YS +++ G+ +YV+
Sbjct: 173 MFWDYLTANDESLHQVMYLFSNRGTPASYRTMNGYSG--HTYKWYNSKGEWVYVQVHFIA 230
Query: 1871 YDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSGVRYIFQL 1928
+ G +L E G + +D D TR L + A E + PS + +
Sbjct: 231 -------NQGV---HNLLDEEAGRLAGEDPDHSTRDL-WEAIE---KGDYPS---WECYI 273
Query: 1929 QIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
Q + +++ + + D TK W ++P G ++++N E+E++ F+P
Sbjct: 274 QT--MTLEQSKKLPFSV-FDLTKVWPHKDFPLRHFGRFTLNENPKNYYAETEQIAFSP 328
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-05
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 38/204 (18%)
Query: 834 PDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI--GYWGREELSQITFRNELQNNRGRK 891
+D +++P T EE+ EG + + + W + T+ N
Sbjct: 449 FGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG----Y 504
Query: 892 YTRTGD-LGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIG 948
Y TGD + DG +I GR+ D++ V+G + +A++E + E P CAV+G
Sbjct: 505 YF-TGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI---IED--PIVAECAVVG 558
Query: 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTR----VVEEHGVTVAS 1004
+++ G +V VV+ D +++IK V ++ G A+
Sbjct: 559 FNDDL---TGQAV------AAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIG-PFAA 608
Query: 1005 VKLIK-----PRTMSKTTSGKIKR 1023
KLI P KT SGKI R
Sbjct: 609 PKLIILVDDLP----KTRSGKIMR 628
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-05
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58
H P+ ++G G +G ST Y L+ G V +LE+ G
Sbjct: 3 HHHHPIEADYLVIGAGIAGASTGYWLSAHG--RVVVLEREAQPG 44
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55
+VG G G++ Y LAK G + L++ +
Sbjct: 8 VVGAGSMGMAAGYQLAKQGVK-TLLVDAFD 36
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Length = 715 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 64/316 (20%), Positives = 108/316 (34%), Gaps = 96/316 (30%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN---SLSADDDARIDAR 1770
R H G G+ +Y++ L + + PV VR S S + D R D R
Sbjct: 68 RVVHARGSGAFGKFKVYESASDLTMAPVLTDTSRETPVFVRFSTVLGSRGSADTVR-DVR 126
Query: 1771 GAAIRIFSDLNGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKR 1823
G A++ +++ GN DL GN F+ + D H K
Sbjct: 127 GFAVKFYTE-EGN----WDLV---GNNIPVFFIQDAIKFPDVI------------HAGKP 166
Query: 1824 VP--HIRDA------VWK--SLR----------LSD-----SYAEMH-YYSNICRLFRF- 1856
P + A W +SD S M + N +
Sbjct: 167 EPHNEVPQAQSAHNNFWDFQFNHTEATHMFTWAMSDRAIPRSLRMMQGFGVNT---YTLI 223
Query: 1857 -TDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRR 1915
G+ +VKF P + G ++ E + D D F R+
Sbjct: 224 NAQGKRHFVKFHWTP-------ELGV---HSLVWDEALKLAGQDPD----------FHRK 263
Query: 1916 -----VSSPSGVRYIFQLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQ 1967
+ + + ++ F +Q I +++ + DI LD TK W E P +GE+ +++
Sbjct: 264 DLWEAIENGAYPKWKFGIQA--IAEEDEHKFDFDI-LDATKIWPEDLVPVRYIGEMELNR 320
Query: 1968 NLST--EESEKLEFNP 1981
N ++E++ F
Sbjct: 321 NPDEFFPQTEQIAFCT 336
|
| >1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori} SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A* Length = 505 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 9e-05
Identities = 71/298 (23%), Positives = 107/298 (35%), Gaps = 86/298 (28%)
Query: 1726 GQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS----NSLSADDDARIDARGAAIRIFSDL 1780
G T+ +I KIF GK R S SAD R D RG A++ +++
Sbjct: 64 GTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADA-VR-DPRGFAMKYYTE- 120
Query: 1781 NGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKRVP--HIRDA- 1830
GN DL GN F+ R DF H KR P ++ +
Sbjct: 121 EGN----WDLV---GNNTPVFFIRDAIKFPDFI------------HTQKRDPQTNLPNHD 161
Query: 1831 -VWK--SLR----------LSD-----SYAEMHYYSNICRLFRFT--DGQEMYVKFKLRP 1870
VW S +SD S+ M + + F G+ +VKF
Sbjct: 162 MVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGS--HTFSLINAKGERFWVKFHFHT 219
Query: 1871 YDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSGVRYIFQL 1928
G + + E I + D D R L F A R P + +
Sbjct: 220 -------MQGV---KHLTNEEAAEIRKHDPDSNQRDL-FDAIA---RGDYPK---WKLSI 262
Query: 1929 QIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
Q+ +P+++A + D TK W +YP ++VG + +++N E E+ F P
Sbjct: 263 QV--MPEEDAKKYRFHP-FDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTP 317
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGA 71
+ ++G G GLS A AL + G + E EI+ GA
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGID-CDVYEAVK---------EIKPVGA 63
|
| >1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping region, terminal helical region, tetramer, heme group, oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis} SCOP: e.5.1.1 Length = 484 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-04
Identities = 64/283 (22%), Positives = 102/283 (36%), Gaps = 84/283 (29%)
Query: 1726 GQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS----NSLSADDDARIDARGAAIRIFSDL 1780
G + ++ GK P+ R S S+D R D RG A++ ++D
Sbjct: 62 GIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDT-LR-DPRGFALKFYTD- 118
Query: 1781 NGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKRVP--HIRDA- 1830
GN DL GN F+ R DF H KR P H++
Sbjct: 119 EGN----YDLV---GNNTPIFFIRDAIKFPDFI------------HSQKRNPRTHLKSPE 159
Query: 1831 -VWK--SLR----------LSD-----SYAEMHYYSNICRLFRFT--DGQEMYVKFKLRP 1870
VW S +SD S+ MH + + F++ G+ +VK+ +
Sbjct: 160 AVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGS--HTFKWVNAAGEVFFVKYHFKT 217
Query: 1871 YDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSGVRYIFQL 1928
+ G + + I + D L A E PS + +
Sbjct: 218 -------NQGI---KNLESQLAEEIAGKNPDFHIEDL-HNAIE---NQEFPS---WTLSV 260
Query: 1929 QIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQN 1968
QI IP +A+ + D TK + EYP I+VG +++++N
Sbjct: 261 QI--IPYADALTMKETL-FDVTKTVSQKEYPLIEVGTMTLNRN 300
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ ++GGG SGLS Y L + G V +L+ + GG
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRSGLSYV-ILDAEASPGG 40
|
| >1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A {Saccharomyces cerevisiae} SCOP: e.5.1.1 Length = 488 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 63/301 (20%), Positives = 110/301 (36%), Gaps = 90/301 (29%)
Query: 1726 GQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS----NSLSADDDARIDARGAAIRIFSDL 1780
G + D+I + +F GK + R S + SAD R D RG A + +++
Sbjct: 64 GYFEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADT-VR-DPRGFATKFYTE- 120
Query: 1781 NGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKRVP--HIRDA- 1830
GN LD N F+ R F H KR P ++RDA
Sbjct: 121 EGN----LDWV---YNNTPVFFIRDPSKFPHFI------------HTQKRNPQTNLRDAD 161
Query: 1831 -VWK--SLRLS-----------------DSYAEMH-YYSNICRLFRFT--DGQEMYVKFK 1867
W + + +Y MH Y + ++++ +G YV+
Sbjct: 162 MFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHT---YKWSNKNGDWHYVQVH 218
Query: 1868 LRPYDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSGVRYI 1925
++ D G + + E I + D + L F A + + PS +
Sbjct: 219 IKT-------DQGI---KNLTIEEATKIAGSNPDYCQQDL-FEAIQ---NGNYPS---WT 261
Query: 1926 FQLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFN 1980
+Q + + +A + + D TK W + ++P VG+I +++N + E+ F
Sbjct: 262 VYIQT--MTERDAKKLPFSV-FDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFA 318
Query: 1981 P 1981
P
Sbjct: 319 P 319
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
H L + + I+GGGP GL+ A L + G V++ E+
Sbjct: 20 HMNLLSDKNVAIIGGGPVGLTMAKLLQQNGID-VSVYER 57
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 2e-04
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYR-------NVTLLEKYHTVGG 59
N RI IVGGG G++ Y L +L +V + E
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFL 101
|
| >2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A* Length = 483 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 66/283 (23%), Positives = 105/283 (37%), Gaps = 84/283 (29%)
Query: 1726 GQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS----NSLSADDDARIDARGAAIRIFSDL 1780
G T+ +I KIF GK + R S +AD R D RG +++ +++
Sbjct: 61 GTFTVTHDITKYTKAKIFSDIGKKTDMFARFSTVAGERGAADA-ER-DIRGFSLKFYTE- 117
Query: 1781 NGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKRVP--HIRDA- 1830
GN DL GN F+ R D H VKR P ++R A
Sbjct: 118 EGN----WDLA---GNNTPVFFLRDPLKFPDLN------------HAVKRDPRTNMRSAK 158
Query: 1831 -VWK--SLR----------LSD-----SYAEMHYYSNICRLFRFT--DGQEMYVKFKLRP 1870
W + +SD +Y MH + + F F D + +VKF
Sbjct: 159 NNWDFWTSLPEALHQVTIVMSDRGIPATYRHMHGFGS--HTFSFINSDNERYWVKFHFVS 216
Query: 1871 YDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVSSPSGVRYIFQL 1928
G + + E G + +D + R L + + P + ++
Sbjct: 217 -------QQGI---KNLSDAEAGELVGNDRESHQRDL-LDSID---NQDFPK---WTLKV 259
Query: 1929 QIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQN 1968
QI +P+ +A + D TK W +YP I+VGE +++N
Sbjct: 260 QI--MPEADAATVPYNP-FDLTKVWPHKDYPLIEVGEFELNRN 299
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVGG 59
CLP +I I+G GPSGL TA AL VTL E+ + GG
Sbjct: 2 CLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGA 71
P RI +VGG SGL+ A L G V + E+ + G
Sbjct: 3 PTTDRIAVVGGSISGLTAALMLRDAGVD-VDVYERSPQ--------PLSGFGT 46
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 3e-04
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHTVGGMCESVEIEEAG 70
++ IVG G +G A L + + + +K GG +
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNP 52
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIG 1632
+ IG I N + LG + P + G V V + + +G
Sbjct: 129 DSWIGDLAII---NT-----GAVVDHDCRLGAACHLGPASA-----LAGGVSVGERAFLG 175
Query: 1633 SQSLVLPNSVVSRDVILGALSV 1654
+ V+P + D I+GA V
Sbjct: 176 VGARVIPGVTIGADTIVGAGGV 197
|
| >2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans} Length = 491 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 62/309 (20%), Positives = 106/309 (34%), Gaps = 86/309 (27%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN---SLSADDDARIDAR 1770
R H G G + ++++ G PV R S + + R D R
Sbjct: 53 RVVHARGFGAHGVFKVKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETLR-DPR 111
Query: 1771 GAAIRIFSDLNGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VKR 1823
G +++ +++ GN D GN F+ R D H +K
Sbjct: 112 GFSVKFYTE-EGN----WDFV---GNNLPVFFIRDAMKFPDMV------------HSLKP 151
Query: 1824 VP--HIRDA--VWK--SLR----------LSD-----SYAEMH-YYSNICRLFRF--TDG 1859
P +I+D W +LR +D SY +M + F++ G
Sbjct: 152 DPRTNIQDPDRYWDFMTLRPESTNMLMHIFTDEGIPASYRKMRGSSVHS---FKWVNAHG 208
Query: 1860 QEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRVS 1917
+Y+K + P G + E + D + + F A E
Sbjct: 209 NTVYIKLRWVP-------KEGV---HNLSADEATEVQGKDFNHASNDT-FQAIE---NGD 254
Query: 1918 SPSGVRYIFQLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNLST--E 1972
P + +Q+ + + D LD TK W E P+ VG +++++N+
Sbjct: 255 FPE---WDLFVQV--LDPADVENFDFDP-LDATKDWFEDVIPFQHVGTMTLNKNVDNYFA 308
Query: 1973 ESEKLEFNP 1981
E+E + FNP
Sbjct: 309 ETESVGFNP 317
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEK 53
I G G G AY L + G+R V ++E+
Sbjct: 11 INGCGIGGAMLAYLLGRQGHR-VVVVEQ 37
|
| >1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A* 1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A* 3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A* 8cat_A* Length = 497 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-04
Identities = 80/310 (25%), Positives = 123/310 (39%), Gaps = 88/310 (28%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHS----NSLSADDDARIDA 1769
R H G G + +I K+F H GK P+ VR S S SAD R D
Sbjct: 68 RVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADT-VR-DP 125
Query: 1770 RGAAIRIFSDLNGNTSSLLDLTLKTGN---AFYAR---TIGDFATWLVCGLAAREEH-VK 1822
RG A++ +++ +GN DL GN F+ R F H K
Sbjct: 126 RGFAVKFYTE-DGN----WDLV---GNNTPIFFIRDPILFPSFI------------HSQK 165
Query: 1823 RVP--HIRDA--VWK--SLR----------LSD-----SYAEMH-YYSNICRLFRFT--D 1858
R P H++D VW SLR SD + M+ Y S+ F+ +
Sbjct: 166 RNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHT---FKLVNAN 222
Query: 1859 GQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDND--TRPLLFLADEFQRRV 1916
G+ +Y KF + D G + + + + ++D D R L F A
Sbjct: 223 GEAVYCKFHYKT-------DQGI---KNLSVEDAARLSQEDPDYGIRDL-FNAIA---TG 268
Query: 1917 SSPSGVRYIFQLQIRPIPQDEAMQ---DIALDCTKPWDEAEYPYIDVGEISIDQNLST-- 1971
PS + F +Q+ + ++A + D TK W +YP I VG++ +++N
Sbjct: 269 KYPS---WTFYIQV--MTFNQAETFPFNP-FDLTKVWPHKDYPLIPVGKLVLNRNPVNYF 322
Query: 1972 EESEKLEFNP 1981
E E++ F+P
Sbjct: 323 AEVEQIAFDP 332
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-04
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 1337 VLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEV 1392
V+I + A I G I+ P+ I + +GP + ++ +++ E+ ++
Sbjct: 245 VIIEEDAEIKSGTYIEG-----------PVYIGKGSEIGPNSYLRPYTILVEKNKI 289
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54
R+ ++G G GLS+A LA+ GY V +L +
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYS-VHILARD 38
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH---TVGGMCESVEIEEAGAELEEMDS 78
RIGIVG G +GL L + VT+ G + A E+
Sbjct: 23 KRIGIVGAGTAGLHLGLFLRQHDVD-VTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVAL 81
Query: 79 H 79
Sbjct: 82 D 82
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2280 | |||
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 100.0 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 100.0 | |
| 1gwe_A | 503 | Catalase; oxidoreductase, hdyrogen-peroxide:hydrog | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 1qwl_A | 505 | KATA catalase; beta barrel, azide complex, oxyferr | 100.0 | |
| 1a4e_A | 488 | Catalase A; oxidoreductase, peroxidase; HET: HEM; | 100.0 | |
| 2isa_A | 483 | Catalase; peroxidase, heme, oxidoreductase, iron, | 100.0 | |
| 2j2m_A | 491 | Catalase; functional class, oxidoreductase; HET: H | 100.0 | |
| 1si8_A | 484 | Catalase; N-terminal ARM, anti-parallel beta-barre | 100.0 | |
| 1m7s_A | 484 | Catalase; beta barrel, alpha helical domain, oxido | 100.0 | |
| 2xq1_A | 509 | Peroxisomal catalase; oxidoreductase, hydrogen per | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 1dgf_A | 497 | Catalase; heme, NADPH, hydrogen peroxide, oxidored | 100.0 | |
| 3e4w_A | 320 | Putative uncharacterized protein; heme enzyme, cat | 100.0 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 100.0 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 100.0 | |
| 1u5u_A | 374 | Allene oxide synthase-lipoxygenase protein; catala | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3dy5_A | 1066 | Allene oxide synthase-lipoxygenase protein; fusion | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.92 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 99.85 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.75 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.75 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.75 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.73 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.73 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.73 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.73 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 99.72 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.71 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.7 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.7 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.7 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.69 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 99.67 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 99.66 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.66 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 99.66 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 99.65 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 99.64 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 99.64 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.63 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 99.63 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 99.62 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 99.61 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 99.61 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.61 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.6 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 99.6 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 99.59 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 99.57 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 99.57 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.55 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.55 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.53 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.52 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 99.52 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 99.51 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 99.51 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 99.5 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.5 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.49 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.48 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 99.48 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.47 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.46 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 99.46 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 99.44 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.44 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 99.44 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.43 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.43 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.42 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.41 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.41 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 99.4 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.4 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.4 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.39 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.38 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.37 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 99.37 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.37 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.37 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.37 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.36 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 99.33 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 99.33 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.33 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 99.31 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.31 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.3 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 99.28 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 99.28 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 99.27 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.27 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.27 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 99.26 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 99.26 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.25 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.24 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.23 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.23 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.22 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 99.22 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.2 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.2 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 99.19 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.17 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.17 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 99.16 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 99.15 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 99.15 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 99.14 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.14 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.13 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 99.13 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.12 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.12 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 99.12 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.11 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.11 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 99.11 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.09 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 99.08 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.07 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.06 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.06 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.06 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 99.04 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.04 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 99.04 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.03 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.02 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.02 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.01 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 99.0 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.0 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 99.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.99 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.99 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.98 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.98 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 98.97 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.97 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.92 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 98.92 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.91 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 98.91 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.9 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.89 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.89 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.88 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.87 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.86 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.86 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.85 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.85 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.81 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 98.81 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 98.81 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.81 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.8 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.79 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.78 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 98.77 | |
| 2cnr_A | 82 | FAS, ACP, acyl carrier protein; polykdetide, phosp | 98.77 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 98.77 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.76 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 98.76 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 98.76 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.74 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.72 | |
| 1x3o_A | 80 | Acyl carrier protein; structural genomics, riken s | 98.71 | |
| 2kjs_A | 87 | Putative acyl carrier protein; alpha, ACP, PNS, st | 98.7 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.67 | |
| 2dnw_A | 99 | Acyl carrier protein; ACP, fatty acid biosynthesis | 98.67 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.67 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.66 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.66 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.66 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.66 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.62 | |
| 3gzm_A | 81 | Acyl carrier protein; helix bundle, phosphopanteth | 98.61 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.61 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.59 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 98.59 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 98.59 | |
| 1klp_A | 115 | ACP, ACPM, meromycolate extension acyl carrier pro | 98.59 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 98.58 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.57 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.57 | |
| 2qnw_A | 82 | Acyl carrier protein; malaria, SGC, structural gen | 98.57 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.53 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.5 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.5 | |
| 2l3v_A | 79 | ACP, acyl carrier protein; structural genomi seatt | 98.5 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 98.48 | |
| 2kwl_A | 84 | ACP, acyl carrier protein; structural genomics, se | 98.48 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 98.46 | |
| 3ejb_A | 97 | Acyl carrier protein; protein-protein complex, cyt | 98.46 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.45 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.44 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.42 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.4 | |
| 1af8_A | 86 | Actinorhodin polyketide synthase acyl carrier Pro; | 98.4 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.39 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.36 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.36 | |
| 2jq4_A | 105 | AGR_C_4658P, hypothetical protein ATU2571; ATC2521 | 98.35 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.35 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.32 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.32 | |
| 1vku_A | 100 | Acyl carrier protein; TM0175, structural genomics, | 98.3 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.29 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.29 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.27 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.27 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 98.27 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.26 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.23 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.23 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.22 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.21 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.21 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.21 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.21 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.2 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.19 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.19 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.19 | |
| 2amw_A | 83 | Hypothetical protein NE2163; all helical protein, | 98.19 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.18 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.16 | |
| 4dxe_H | 101 | ACP, acyl carrier protein; acyl-carrier-protein sy | 98.16 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.16 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 98.16 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.15 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.15 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.14 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.12 | |
| 2lte_A | 103 | Specialized acyl carrier protein; APO protein, tra | 97.41 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.12 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.1 | |
| 2kw2_A | 101 | Specialized acyl carrier protein; structural genom | 98.1 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.1 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.09 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.09 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.07 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.07 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.06 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.04 | |
| 2l4b_A | 88 | Acyl carrier protein; infectious disease, human gr | 98.03 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.03 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.03 | |
| 1dv5_A | 80 | APO-DCP, APO-D-alanyl carrier protein; 3-helix bun | 98.02 | |
| 2l9f_A | 102 | CALE8, meacp; transferase, acyl carrier protein; N | 98.02 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.01 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.0 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.99 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.99 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 97.99 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.99 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.98 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 97.97 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.96 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 97.93 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 97.88 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.88 | |
| 2fq1_A | 287 | Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy | 97.87 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.86 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.85 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.83 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 97.8 | |
| 3ce7_A | 107 | Specific mitochodrial acyl carrier protein; malari | 97.77 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.75 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 97.73 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.71 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.69 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 97.69 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 97.69 | |
| 2kci_A | 87 | Putative acyl carrier protein; alpha, ACP, PCP, st | 97.67 | |
| 2lki_A | 105 | Putative uncharacterized protein; helical bundle, | 97.67 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.66 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.66 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.65 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.64 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 97.64 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 97.63 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.6 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.59 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.55 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.54 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.53 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.52 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 97.48 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 97.48 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 97.48 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 97.45 | |
| 1fh1_A | 92 | NODF, nodulation protein F; ROOT nodulation factor | 97.44 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.42 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.42 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 97.41 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.4 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.39 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.38 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.38 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.38 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.38 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.35 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.33 | |
| 2cgq_A | 113 | Acyl carrier protein ACPA; RV0033, protein transpo | 97.32 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.27 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.26 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 97.24 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.23 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 97.23 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.22 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 97.21 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.2 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.19 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.19 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.19 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.17 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.17 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.16 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 97.16 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.16 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.16 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.16 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.15 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.14 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 97.11 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.11 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.1 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 97.1 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.1 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.09 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.08 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.08 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 97.03 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.03 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.01 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 96.98 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 96.96 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 96.93 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 96.92 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 96.92 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 96.91 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 96.87 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 96.86 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 96.85 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.85 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 96.83 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 96.81 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 96.81 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 96.81 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.79 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 96.74 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 96.71 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 96.68 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 96.66 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 96.65 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 96.62 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 96.59 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.55 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 96.54 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 96.54 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 96.53 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 96.52 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.51 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 96.48 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 96.47 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 96.46 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 96.45 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 96.44 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 96.37 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 96.36 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 96.35 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 96.35 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 96.35 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 96.31 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 96.31 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 96.29 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 96.29 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 96.24 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 96.22 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 96.21 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.17 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 96.15 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 96.15 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 96.12 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 96.11 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 96.09 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 96.09 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 96.08 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 96.05 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 96.05 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 95.9 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 95.74 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 95.71 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 95.7 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 95.7 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 95.69 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 95.66 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 95.61 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 95.61 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 95.58 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 95.49 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 95.46 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 95.35 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 95.33 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 95.28 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 95.27 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 95.25 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 95.23 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 95.23 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 95.21 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 95.16 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 95.14 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 95.08 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 95.05 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 95.04 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 95.01 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 95.0 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 95.0 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 94.95 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 94.95 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 94.94 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 94.88 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 94.84 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 94.83 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 94.75 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 94.61 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 94.58 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 94.56 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 94.53 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 94.49 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 94.45 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 94.4 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 94.37 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 94.27 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 94.16 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 94.09 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 93.86 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 93.8 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 93.72 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 93.69 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 93.69 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 93.63 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 93.58 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 93.49 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 93.49 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 93.48 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 93.28 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 92.86 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 92.78 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 92.75 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 92.71 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 91.85 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 90.9 | |
| 2e1m_B | 130 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 90.7 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 90.35 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.32 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 89.94 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.18 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 89.04 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.96 |
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-80 Score=833.17 Aligned_cols=572 Identities=14% Similarity=0.152 Sum_probs=386.7
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
.+...++.+++++++++. |+++|+.+.+ +++||+||+++++++|++|+++ |+++||+|+++++|+++++
T Consensus 23 ~~~~~tl~~~~~~~a~~~--Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~---Gv~~g~~V~i~~~~s~~~v 91 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALH--PHREAIRDRF------GSVDYRQLLDSAEQLSDYLLEH---YPQPGVCLGVYGEYSRESI 91 (620)
T ss_dssp GGGSCCHHHHHHHHHHHC--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHH---CCSSCCEEEEESSSCHHHH
T ss_pred CCCCCCHHHHHHHHHHhC--CCCeEEEcCC------CcCcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHH
Confidence 344678999999998874 8999998643 5899999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccc
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAE 624 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (2280)
+++|||+|+|++|||+|+.+|.++ +.++++++++++++++....... ........... ....
T Consensus 92 va~lailkaGa~~vpld~~~p~~~-------l~~il~~~~~~~vl~~~~~~~~~-----~~~~~~~~~~~------~~~~ 153 (620)
T 4dg8_A 92 TCLLAILLSGHHYLYIDLKQPAAW-------NAELCRQVDCRLILDCSTTPTPA-----NGLPCVPVRHL------PAAP 153 (620)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTEEEEEECCSSCCCC-----TTSCEEEGGGC------CCCC
T ss_pred HHHHHHHHhCCEEEeeCccChHHH-------HHHHHHhCCCcEEEecCcccccc-----cCCceeeeccC------CcCC
Confidence 999999999999999999999998 88999999999999764332111 11111111100 0001
Q ss_pred cccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccce
Q 037878 625 NVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGST 704 (2280)
Q Consensus 625 ~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~ 704 (2280)
.........++|+|||+|||||||+||||+++|+++.+.+.. ...+++.+++++++++|++|++++ .+++.+|+.|++
T Consensus 154 ~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~ 231 (620)
T 4dg8_A 154 ASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGC 231 (620)
T ss_dssp CCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCE
T ss_pred ccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCE
Confidence 111223356899999999999999999999999999887765 456788999999999999999997 468999999999
Q ss_pred EEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhc
Q 037878 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTR 784 (2280)
Q Consensus 705 ~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~ 784 (2280)
+++.+...+ +|..+.+.++++++|++..+|+++..+.+.. ..++++||.+++|||++++++++++.+.+
T Consensus 232 ~v~~~~~~~--~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~--------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~- 300 (620)
T 4dg8_A 232 CVLNDLGPL--DPGVLRQLIGERGADSAWLTASLFNTLVDLD--------PDCLGGLRQLLTGGDILSVPHVRRALLRH- 300 (620)
T ss_dssp EEECCSSSC--CHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC--------GGGGTTCSEEEEESSCCCHHHHHHHHHHC-
T ss_pred EEeCccccC--CHHHHHHHHHHhCCcEEEccHHHHHHHHhcC--------hhhCCCccEEEEEeCcCCHHHHHHHHHhC-
Confidence 998754433 9999999999999999999999999887531 14578999999999999999999998864
Q ss_pred CCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCC
Q 037878 785 PFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPS 864 (2280)
Q Consensus 785 ~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~ 864 (2280)
++++++|.||+||+++++++........ ....+++|+|++|++++|+|+++. +++|+|++|||||+|++
T Consensus 301 ----~~~~l~n~YG~TE~~~~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~i~d~~~~-~~~~~g~~GEl~i~G~~ 369 (620)
T 4dg8_A 301 ----PRLHLVNGYGPTENTTFTCCHVVTDDDL------EEDDIPIGKAIAGTAVLLLDEHGQ-EIAEPDRAGEIVAFGAG 369 (620)
T ss_dssp ----TTCEEEEEECCGGGCSCSEEEECCTGGG------GSSSCCCBEECTTEEEEEECTTSC-BCCSSSCCEEEEEEETT
T ss_pred ----CCeEEEeeEchhhhhhheEEEecccccc------CCCCCCceecccCcEEEEECccCC-CCCCCCCceEEEEeccc
Confidence 5788999999999998776543222111 112357899999999999998764 55689999999999999
Q ss_pred cccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCce
Q 037878 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC 943 (2280)
Q Consensus 865 v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~ 943 (2280)
+++||||+|++|+++|.+++....+.+||||||+|+++ ||.|+|+||+|||||++|+||+|+|||++|.+||+|.+
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~--- 446 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILD--- 446 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEE---
T ss_pred cccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccE---
Confidence 99999999999999998766433333899999999997 99999999999999999999999999999999999975
Q ss_pred eEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccch
Q 037878 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023 (2280)
Q Consensus 944 aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR 1023 (2280)
|+|++.+++.. ..+++..... .. ++.+.++++|+. |++| ..++.+++||+|+||||||
T Consensus 447 a~Vv~~~~~~~-------------~~lv~~~~~~-~~----~~~~~l~~~Lp~-y~~P---~~~~~v~~lP~t~~GKidR 504 (620)
T 4dg8_A 447 CALLVRERNGV-------------KQLLCAWTGK-AD----ASPQALLRQLPT-WQRP---HACVRVEALPLTAHGKLDR 504 (620)
T ss_dssp EEEEEEEETTE-------------EEEEEEEEEC-TT----CCCHHHHHHSCG-GGSC---SEEEECSSCCCC----CCH
T ss_pred EEEEEEeCCCc-------------eEEEEEEecC-hH----HHHHHHHHhChh-hcCC---cEEEEECcCCCCcccCHhH
Confidence 78887654321 1122222211 11 123455555553 5544 4455669999999999999
Q ss_pred HHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCCCccccC
Q 037878 1024 FECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSA 1103 (2280)
Q Consensus 1024 ~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~~~~i~~ 1103 (2280)
++|++.+.+.... ...+.+++|+.|+++|+++||++ .++.
T Consensus 505 ~~L~~~~~~~~~~--------------------------------------~~~~~~~~e~~l~~iw~~vL~~~--~~~~ 544 (620)
T 4dg8_A 505 AALLRRLEEPLER--------------------------------------CASALDPDQRGCAQLWSELLGCE--VGAA 544 (620)
T ss_dssp HHHHHHTCSCC---------------------------------------------------------------------
T ss_pred HHHhhcccccccc--------------------------------------ccCCCCHHHHHHHHHHHHHhCCC--CCCC
Confidence 9998875322100 01134667889999999999996 7899
Q ss_pred CCChhhcccchHHHHHHHHHHHH-HhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1104 TDSLVSYGIDSIGVVRAAQKLSD-FLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1104 ~~~Ff~lGGdSL~a~~l~~~l~~-~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
+||||++|||||+||||++++++ .+|+++++++||+||||++||+++++..
T Consensus 545 ~d~Ff~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~~ 596 (620)
T 4dg8_A 545 DQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLRSHG 596 (620)
T ss_dssp ----------------------------------------------------
T ss_pred CCChhhccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHHHHHHHHhcC
Confidence 99999999999999999999998 7999999999999999999999998644
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-75 Score=855.54 Aligned_cols=579 Identities=20% Similarity=0.264 Sum_probs=463.7
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.++++.++++. |+++|+.+.+ +++||+||+++++++|++|+++ |+++||+|+|+++||+++++++
T Consensus 463 ~~~l~~~~~~~~~~~--p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~---Gv~~g~~V~i~~~~s~~~vv~~ 531 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNAN--PDAPALTYSG------QTLSYRELDEEANRIARRLQKH---GAGKGSVVALYTKRSLELVIGI 531 (1304)
T ss_dssp CCCHHHHHHHHHHHC--TTSEEEESSS------CEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEECCCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--CCCeEEEECC------eeEcHHHHHHHHHHHHHHHHhc---CcCCcCEEEEEeCCCHHHHHHH
Confidence 368999999988874 8999997532 5899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCC-ccccccccccccccccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLP-WLHTDSWVKNSKNLLAENV 626 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 626 (2280)
|||+|+|++|||+||.+|.+| +.++++++++++++++......... .+... .+..++. ........
T Consensus 532 lailkaG~~~vpldp~~p~~r-------l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~ 598 (1304)
T 2vsq_A 532 LGVLKAGAAYLPVDPKLPEDR-------ISYMLADSAAACLLTHQEMKEQAAE--LPYTGTTLFIDDQ----TRFEEQAS 598 (1304)
T ss_dssp HHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCCEEEECSTTCTTSTT--CCCCSEEEESSCG----GGGGSCSS
T ss_pred HHHHHHCCEEEEECCCCHHHH-------HHHHHHHcCCCEEEECcchhhhhhc--cCCCCcEEEeccc----cccccccC
Confidence 999999999999999999999 8899999999999998765433211 11111 1111110 00001111
Q ss_pred cccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEE
Q 037878 627 VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAI 706 (2280)
Q Consensus 627 ~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~v 706 (2280)
.......++|+|||+|||||||+||||+++|+++.+. .+....+++++++++++++|++|+.+. .+++.+|..|++++
T Consensus 599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLI 676 (1304)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEE
Confidence 1223457899999999999999999999999999876 444556788899999999999999986 57899999999999
Q ss_pred EeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCC
Q 037878 707 LFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786 (2280)
Q Consensus 707 l~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~ 786 (2280)
+.++.. ..+|..+.+.++++++|++..+|++++.+.+.. ...+++||.+++|||+++++++++|.+.+
T Consensus 677 ~~~~~~-~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~--------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~--- 744 (1304)
T 2vsq_A 677 IADEHT-LLDTERLTDLILQENVNVMFATTALFNLLTDAG--------EDWMKGLRCILFGGERASVPHVRKALRIM--- 744 (1304)
T ss_dssp ECCGGG-TTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC--------SHHHHTCSEEEEESSCCCHHHHHHHHHHH---
T ss_pred ECChhh-cCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc--------hhcCCCccEEEEecCCCCHHHHHHHHHhC---
Confidence 987643 459999999999999999999999999886531 12357899999999999999999999876
Q ss_pred CCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcc
Q 037878 787 GLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAG 866 (2280)
Q Consensus 787 g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~ 866 (2280)
++++++|.||+||++++++.......+ ......++|+|++|++++|+|+++ .++|.|++|||||+|++++
T Consensus 745 --~~~~l~n~YG~TE~~~~~~~~~~~~~~------~~~~~~~iG~p~~~~~~~i~d~~~--~~~p~G~~GEl~i~G~~v~ 814 (1304)
T 2vsq_A 745 --GPGKLINCYGPTEGTVFATAHVVHDLP------DSISSLPIGKPISNASVYILNEQS--QLQPFGAVGELCISGMGVS 814 (1304)
T ss_dssp --CTTCEEEEECCGGGSSCSEEEECCCCC------SSCSSCCCBEECTTEEEEEECTTS--CBCCTTCCEEEEEEETTCC
T ss_pred --CCCEEEEeEChhHHhHHheeeeccCcc------ccCCCCCCceeeCCCEEEEECCCc--CCCCCCCceEEEEeccccC
Confidence 356899999999999887764322111 111235689999999999999875 5668999999999999999
Q ss_pred cccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeE
Q 037878 867 IGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCA 945 (2280)
Q Consensus 867 ~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aa 945 (2280)
+||+|+|++|+++|+.+|+. ++++||||||+|+++ ||.|+|+||+|||||++|+||||+|||++|.+||+|.+ |+
T Consensus 815 ~GY~~~p~~T~~~f~~~p~~-~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~---a~ 890 (1304)
T 2vsq_A 815 KGYVNRADLTKEKFIENPFK-PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKD---AV 890 (1304)
T ss_dssp CCBTTCHHHHHHHEEECTTS-TTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCE---EE
T ss_pred ccccCCcccchhhhccCCCC-CCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCce---EE
Confidence 99999999999999887653 567999999999997 99999999999999999999999999999999999975 77
Q ss_pred EEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHH
Q 037878 946 VIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFE 1025 (2280)
Q Consensus 946 Vv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~ 1025 (2280)
|++.+++.. +...+++++ ... ....+++++.++++|+. ||+|. .++.+++||+|+||||||++
T Consensus 891 V~~~~~~~~---------~~~l~a~vv---~~~-~~~~~~l~~~l~~~Lp~-ymvP~---~~~~l~~lP~t~~GKidR~~ 953 (1304)
T 2vsq_A 891 VVADRHESG---------DASINAYLV---NRT-QLSAEDVKAHLKKQLPA-YMVPQ---TFTFLDELPLTTNGKVNKRL 953 (1304)
T ss_dssp EEEECCSSS---------CCEEEEEEE---CSS-SSCHHHHHHHHHHHSCG-GGSCS---EEEEESCCCCCSSCSSCCSC
T ss_pred EEEEecCCC---------CEEEEEEEe---CCC-CCCHHHHHHHHHHhChH-hhhcc---EEEEecccCCCCCcccCHhh
Confidence 887654321 112233332 222 22335566666666554 45554 44455999999999999975
Q ss_pred HHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCCCccccCCC
Q 037878 1026 CLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITKVSATD 1105 (2280)
Q Consensus 1026 L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~~~~i~~~~ 1105 (2280)
|+.|..... . .....+.+++|+.|+++|+++||++ .|+.+|
T Consensus 954 ------------L~~~~~~~~----------~---------------~~~~~p~~~~e~~l~~~~~~vL~~~--~i~~~~ 994 (1304)
T 2vsq_A 954 ------------LPKPDQDQL----------A---------------EEWIGPRNEMEETIAQIWSEVLGRK--QIGIHD 994 (1304)
T ss_dssp ------------CCCCCGGGG----------C---------------CCCCCCSSHHHHHHHHHHHHHHTCS--CCCTTC
T ss_pred ------------cCCcchhhh----------c---------------ccccCCCChHHHHHHHHHHHHcCCC--ccCCCC
Confidence 554421100 0 0012346789999999999999986 899999
Q ss_pred ChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1106 SLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1106 ~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
|||++|||||+|++++++|++.+|+++++.++|++||+++||++++...
T Consensus 995 ~ff~lGg~Sl~a~~l~~~l~~~~g~~l~~~~~~~~~ti~~la~~~~~~~ 1043 (1304)
T 2vsq_A 995 DFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGG 1043 (1304)
T ss_dssp CTTTTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHTT
T ss_pred CHHHhCCChHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999997643
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-74 Score=784.81 Aligned_cols=578 Identities=17% Similarity=0.206 Sum_probs=454.2
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
++...++.++++++++ ||++|+.+.+ +++||+||+++++++|++|+++ |+++||+|+++++|+++++
T Consensus 23 ~~~~~~l~~~~~~~a~----pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~---Gv~~gd~V~l~~~~s~~~v 89 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA----SDSIAVIDGE------RQLSYRELNQAADNLACSLRRQ---GIKPGETALVQLGNVAELY 89 (617)
T ss_dssp SCCCCCTTHHHHTTTT----CCSEEEEETT------EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSHHHH
T ss_pred CCCcCCHHHHHHHhhC----CCCeEEecCC------ceEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCcHHHH
Confidence 3445678899988876 6999997532 5899999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhh-----c--cCCCCCCCccccccccc-
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAV-----R--VGSWPNLPWLHTDSWVK- 616 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~- 616 (2280)
+++|||+++|+++||+++.+|.++ +.++++++++++++++....... . ....+....+.......
T Consensus 90 va~lA~l~aG~~~vpl~~~~~~~~-------l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (617)
T 3rg2_A 90 ITFFALLKLGVAPVLALFSHQRSE-------LNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162 (617)
T ss_dssp HHHHHHHHHTCEEEEECTTCCHHH-------HHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST
T ss_pred HHHHHHHhcCeEEccCCccccHHH-------HHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc
Confidence 999999999999999999999998 88999999999999986543100 0 00001111111100000
Q ss_pred -cccc--cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH
Q 037878 617 -NSKN--LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 617 -~~~~--~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
.... ..........+..++|+|||+|||||||+||||+++|+++++.+......+++.+++++++++|++|.+++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 242 (617)
T 3rg2_A 163 HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSS 242 (617)
T ss_dssp TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHS
T ss_pred cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhH
Confidence 0000 0011111233456799999999999999999999999999999999999999999999999999999988754
Q ss_pred -HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCC
Q 037878 694 -GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVR 772 (2280)
Q Consensus 694 -~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~ 772 (2280)
+++.+++.|+++++.+. .++..+++.++++++|++..+|+++..+++....... ..++++||.+++|||+++
T Consensus 243 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~~~l~~lr~i~~gGe~l~ 315 (617)
T 3rg2_A 243 PGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---RAQLASLKLLQVGGARLS 315 (617)
T ss_dssp SHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC---TTTTTTCCEEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc---cccCCCccEEEEcCCcCC
Confidence 68999999999998764 3889999999999999999999999998876654321 246889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCC-CCceEEEEcCCCCcccCC
Q 037878 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQND-PDVDIRIVNPETSEEIGE 851 (2280)
Q Consensus 773 ~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~-pg~~v~Ivd~~~~~~~~p 851 (2280)
+++.++|.+.+ +++++|.||+||+++.++...... ....+++|.|+ ++.+++|+|+++ .++|
T Consensus 316 ~~~~~~~~~~~------~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~~i~d~~~--~~~p 378 (617)
T 3rg2_A 316 ATLAARIPAEI------GCQLQQVFGMAEGLVNYTRLDDSA---------EKIIHTQGYPMCPDDEVWVADAEG--NPLP 378 (617)
T ss_dssp HHHHHHHHHHT------CSEEEEEEEETTEEEEECCTTSCH---------HHHHHCCCEESCTTCEEEEECTTS--CBCC
T ss_pred HHHHHHHHHHh------CCcEEEEeccCcceeecccCCCcc---------cccccCCCccCCCCceEEEECCCC--CCCC
Confidence 99999998874 578999999999986554321110 11235678887 788999999775 4568
Q ss_pred CCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHH
Q 037878 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEK 930 (2280)
Q Consensus 852 ~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~ 930 (2280)
.|++|||||+||++++||||+|++|+++|.. ++||||||+|+++ ||.|+|+||+|||||++|+||+|+|||+
T Consensus 379 ~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~-------~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~ 451 (617)
T 3rg2_A 379 QGEVGRLMTRGPYTFRGYYKSPQHNASAFDA-------NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIEN 451 (617)
T ss_dssp TTCCEEEEEECSSSCSCCTTCHHHHHHHBCT-------TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHH
T ss_pred CCCceEEEecCccccchhcCChhhhhhccCC-------CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHH
Confidence 9999999999999999999999999999964 4899999999997 9999999999999999999999999999
Q ss_pred HHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecC
Q 037878 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKP 1010 (2280)
Q Consensus 931 ~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~ 1010 (2280)
+|.+||+|.+ |+|++.+++..+ ...+++++ ..+ .....++.+.++++ .++.++.|..++.+
T Consensus 452 ~l~~~p~V~~---a~vv~~~~~~~~---------~~~~a~vv---~~~-~~~~~~l~~~l~~~---~lp~~~vP~~~~~v 512 (617)
T 3rg2_A 452 LLLRHPAVIY---AALVSMEDELMG---------EKSCAYLV---VKE-PLRAVQVRRFLREQ---GIAEFKLPDRVECV 512 (617)
T ss_dssp HHTTSTTEEE---EEEEEEEETTTE---------EEEEEEEE---ESS-CCCHHHHHHHHHTT---TCCGGGSCSEEEEC
T ss_pred HHHhCCCeeE---EEEEeccCcccC---------eeEEEEEE---eCC-CCCHHHHHHHHHhC---CCccccCCcEEEEe
Confidence 9999999975 888877654322 11222322 222 22334555555542 23333444455667
Q ss_pred CCccCCCCcccchHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHH
Q 037878 1011 RTMSKTTSGKIKRFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLV 1090 (2280)
Q Consensus 1011 ~~lP~t~sGKvdR~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw 1090 (2280)
++||+|+||||||++|++.+.+.... . ..+.+..|+.++++|
T Consensus 513 ~~lP~t~~GKidR~~L~~~~~~~~~~------------------~--------------------~~~~~~~~~~l~~~~ 554 (617)
T 3rg2_A 513 DSLPLTAVGKVDKKQLRQWLASRASA------------------G--------------------RASIPASKAALREVI 554 (617)
T ss_dssp SCCCBCTTSSBCHHHHHHHHHHHHHH------------------S--------------------SSCCCCSHHHHHHHH
T ss_pred cccCCCCCCCCcHHHHHHHHhccccc------------------c--------------------cccccccHHHHHHHH
Confidence 99999999999999998876432100 0 001123467899999
Q ss_pred HHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1091 SEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1091 ~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
+++|+.. +.++.+||||++|||||+||+|++++++ ++.++++.+||+||||++||+++++
T Consensus 555 ~~~l~~~-~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~~~~~~~~~~~~pti~~la~~l~~ 614 (617)
T 3rg2_A 555 LPLLDES-DEPFDDDNLIDYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTIDAWWKLLSR 614 (617)
T ss_dssp GGGSCTT-CCCCTTSCGGGGTCCHHHHHHHHHHHHT-TSTTCCHHHHHHSCCHHHHHHHHCC
T ss_pred HHHhccC-CCCCCCCChhhcCccHHHHHHHHHHHHH-hcCCCCHHHHhcCCCHHHHHHHHHh
Confidence 9999843 4788999999999999999999999997 5889999999999999999999864
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-65 Score=688.25 Aligned_cols=524 Identities=19% Similarity=0.238 Sum_probs=382.4
Q ss_pred CCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhH
Q 037878 464 EFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDF 543 (2280)
Q Consensus 464 ~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~ 543 (2280)
.++...++.+++++++++. |+++|+.+.+ +++||+||+++++++|+.|+++ |+++||+|+++++|++++
T Consensus 34 ~~~~~~~l~~~l~~~a~~~--p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~ 102 (563)
T 1amu_A 34 EYPRDKTIHQLFEEQVSKR--PNNVAIVCEN------EQLTYHELNVKANQLARIFIEK---GIGKDTLVGIMMEKSIDL 102 (563)
T ss_dssp CCCTTCCHHHHHHHHHHHC--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSHHH
T ss_pred CCCCCCcHHHHHHHHHHHC--CCCeEEEeCC------ceecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHH
Confidence 3555678999999988774 8999997532 5899999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccc
Q 037878 544 VDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623 (2280)
Q Consensus 544 ~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (2280)
++++|||+++|+++||+++.++.++ +.++++++++++++++............ ......... ..... .
T Consensus 103 ~~~~lA~~~~Gav~vpl~~~~~~~~-------l~~il~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~-~ 170 (563)
T 1amu_A 103 FIGILAVLKAGGAYVPIDIEYPKER-------IQYILDDSQARMLLTQKHLVHLIHNIQF-NGQVEIFEE---DTIKI-R 170 (563)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEECGGGHHHHTTSCC-CSEEEECCC---STTTT-S
T ss_pred HHHHHHHHHhCCEEEEeCCCCcHHH-------HHHHHHhcCCCEEEEcCchhhhhhhccc-cCceeeecc---hhhcc-c
Confidence 9999999999999999999999988 8899999999999998765433221110 000100000 00000 0
Q ss_pred ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccc
Q 037878 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703 (2280)
Q Consensus 624 ~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~ 703 (2280)
.......+..++|+|||+|||||||.||||++||+++.+.+......++++++|++++++|++|+++++ .++.+++.|+
T Consensus 171 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~ 249 (563)
T 1amu_A 171 EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGA 249 (563)
T ss_dssp CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTC
T ss_pred cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCC
Confidence 111112345678999999999999999999999999999988888888999999999999999999974 6788999999
Q ss_pred eEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHh
Q 037878 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT 783 (2280)
Q Consensus 704 ~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~ 783 (2280)
++++.+... ..++..+++.++++++|++.++|+++..+.. .+++++|.+++|||++++++.++|.+
T Consensus 250 ~~v~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-----------~~~~~lr~~~~gG~~l~~~~~~~~~~-- 315 (563)
T 1amu_A 250 SLYIILKDT-INDFVKFEQYINQKEITVITLPPTYVVHLDP-----------ERILSIQTLITAGSATSPSLVNKWKE-- 315 (563)
T ss_dssp EEEECCHHH-HTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----------TTCCSCSEEEEESSCCCHHHHHHHTT--
T ss_pred EEEEcChHh-hcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----------cccccccEEEEEEecCCHHHHHHHHh--
Confidence 999876432 3589999999999999999999988765521 34678999999999999999998864
Q ss_pred cCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCC
Q 037878 784 RPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP 863 (2280)
Q Consensus 784 ~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp 863 (2280)
.+.++|.||+||++++++........ ....+++|+|+|+++++|+|+++ ..+|.|+.|||+|+||
T Consensus 316 ------~~~~~~~YG~TE~~~~~~~~~~~~~~-------~~~~~~vG~p~~~~~v~i~d~~~--~~~~~g~~GEl~v~g~ 380 (563)
T 1amu_A 316 ------KVTYINAYGPTETTICATTWVATKET-------IGHSVPIGAPIQNTQIYIVDENL--QLKSVGEAGELCIGGE 380 (563)
T ss_dssp ------TSEEEEEECCGGGSSCSEEEECCSSC-------CCSSCCCBEECTTEEEEEECTTS--CBCCTTCEEEEEEEET
T ss_pred ------CCeEEEEECcCHHhHhheeeeccccc-------CCCCCcccceeCCCEEEEECCCc--CCCCCCCcEEEEEech
Confidence 25799999999998766543221110 11236789999999999999775 4568999999999999
Q ss_pred CcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCc
Q 037878 864 SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPG 942 (2280)
Q Consensus 864 ~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~ 942 (2280)
++++||||+|+.|+++|.++++ .++++||||||+|+++ ||+|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 381 ~v~~GY~~~pe~t~~~f~~~~~-~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~-- 457 (563)
T 1amu_A 381 GLARGYWKRPELTSQKFVDNPF-VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE-- 457 (563)
T ss_dssp TCCCEETTCHHHHHHHEEECSS-STTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE--
T ss_pred hhChhhCCCchhhhhhcccCCC-CCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcce--
Confidence 9999999999999999976443 2457899999999997 99999999999999999999999999999999999975
Q ss_pred eeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccc
Q 037878 943 CCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIK 1022 (2280)
Q Consensus 943 ~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvd 1022 (2280)
|+|++.+++..+ ..+.+++ .... ....+++++.++++|+. |++ |..++.+++||+|+|||||
T Consensus 458 -a~Vv~~~~~~~~----------~~~~a~v--v~~~-~~~~~~l~~~l~~~L~~-y~~---P~~i~~v~~lP~t~~GKi~ 519 (563)
T 1amu_A 458 -TAVSVHKDHQEQ----------PYLCAYF--VSEK-HIPLEQLRQFSSEELPT-YMI---PSYFIQLDKMPLTSNGKID 519 (563)
T ss_dssp -EEEEEEECTTSC----------EEEEEEE--EESS-CCCHHHHHHHHHHHSCG-GGS---CSEEEECSSCCBCTTSSBC
T ss_pred -EEEEEeecCCCC----------eEEEEEE--EeCC-CCCHHHHHHHHHhhCch-hhC---CcEEEEecccCCCCCcChh
Confidence 888887664321 1122222 2222 22335666666666553 444 4455566999999999999
Q ss_pred hHHHHHHhhcCCCCCCCCccchhcccccccccccccCCCCCCCCCCCCcccccCCChhHHHHHHHHHHHHHhCCC
Q 037878 1023 RFECLKQFVDGTLNTVPEPLFTKRKLTRSFTTGTCKEGRTPRPQLVSSPVASKKMSNKDIVEFLKGLVSEQTGIP 1097 (2280)
Q Consensus 1023 R~~L~~~~~~~~~~~lp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vLg~~ 1097 (2280)
|++|++ +.... .. ......+.+++|+.|+++|+++||..
T Consensus 520 r~~L~~------------~~~~~---------~~---------------~~~~~~p~~~~e~~l~~iw~~~L~~~ 558 (563)
T 1amu_A 520 RKQLPE------------PDLTF---------GM---------------RVDYEAPRNEIEETLVTIWQDVLGSH 558 (563)
T ss_dssp GGGSCC------------CCCCC----------------------------------------------------
T ss_pred HHhcCC------------ccccc---------cc---------------ccccCCCCCHHHHHHHHHHHHHhhhh
Confidence 986422 11000 00 00112356889999999999999974
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-65 Score=691.84 Aligned_cols=542 Identities=34% Similarity=0.571 Sum_probs=426.1
Q ss_pred CCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 467 ELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 467 ~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
...++.+++++++++. |+++|+.+.+.+ ..+++||+||+++++++|+.|+++ |+++||+|+++++|+++++++
T Consensus 9 ~~~tl~~~l~~~a~~~--p~~~a~~~~~~~--~~~~~Ty~eL~~~~~~lA~~L~~~---gv~~gd~V~i~~~~~~~~~~~ 81 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHS--PNKKSCTFLNKE--LEETMTYEQLDQHAKAIAATLQAE---GAKPGDRVLLLFAPGLPLIQA 81 (590)
T ss_dssp TCSSHHHHHHHHHHHC--TTSEEEEEEETT--EEEEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSHHHHHH
T ss_pred CcccHHHHHHHHHHhC--CCCeEEEEEcCC--eeEEEcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCchhHHHH
Confidence 4568999999998874 899999887632 237999999999999999999998 999999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccc-cccccccccc
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWV-KNSKNLLAEN 625 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 625 (2280)
+|||+++|+++||+++..+... ..++.++++++++++++++.+.............+........ ..........
T Consensus 82 ~lA~~~~G~~~vpl~~~~~~~~----~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (590)
T 3kxw_A 82 FLGCLYAGCIAVPIYPPAQEKL----LDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSS 157 (590)
T ss_dssp HHHHHHTTCEEEEECCCCSHHH----HHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGGG
T ss_pred HHHHHHhCcEEEEecCCCchHH----HHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhccccccc
Confidence 9999999999999999875322 2337899999999999998765443322110111100000000 0000001111
Q ss_pred ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceE
Q 037878 626 VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTA 705 (2280)
Q Consensus 626 ~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~ 705 (2280)
........++|++||+|||||||.||||++||+++++.+.+....+++.++|++++++|++|+++++..++.+++.|+++
T Consensus 158 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~ 237 (590)
T 3kxw_A 158 SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQA 237 (590)
T ss_dssp GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEE
T ss_pred cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceE
Confidence 12234567899999999999999999999999999999999999999999999999999999999977789999999999
Q ss_pred EEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcC
Q 037878 706 ILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785 (2280)
Q Consensus 706 vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~ 785 (2280)
++.++..+..+|..+++.++++++|++.++|+++..+.+...... ....++++||.+++|||++++++.++|.+.+..
T Consensus 238 v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~ 315 (590)
T 3kxw_A 238 IMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKE 315 (590)
T ss_dssp EECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG--GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGG
T ss_pred EEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh--ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 998776555689999999999999999999999998887643222 223678999999999999999999999999877
Q ss_pred CCCCCcccccccCccccccceecccCCCCce--e---------------ecCCCceeeccccCCCCCceEEEEcCCCCcc
Q 037878 786 FGLSQGVMAPGYGLAENCVFVSCAYGQGKPI--I---------------LDWQGRVCCGYVDQNDPDVDIRIVNPETSEE 848 (2280)
Q Consensus 786 ~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~--~---------------~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~ 848 (2280)
.|+++..++|.||+||++++++......... . ....+....+++|+|+++ ++|+|++++ .
T Consensus 316 ~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~-~ 392 (590)
T 3kxw_A 316 FGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTL-I 392 (590)
T ss_dssp GTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTC-C
T ss_pred cCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCC-c
Confidence 7777889999999999998776542211000 0 001233456789999998 889998865 4
Q ss_pred cCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCC-CCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHH
Q 037878 849 IGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNN-RGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSAD 927 (2280)
Q Consensus 849 ~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~-~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~E 927 (2280)
.+|+|++|||+|+||++++||||+|+.|+++|...+.+. ++.+||||||+|+++||.|+|+||+|||||++|+||+|.|
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l~~~GR~dd~Ik~~G~~v~p~e 472 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQD 472 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEEEEEEESSCHHHHHHHTTHHHH
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEEEEEcCccceEEECCEecCHHH
Confidence 457999999999999999999999999999997643332 2445999999999999999999999999999999999999
Q ss_pred HHHHH-HhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC---CCCHHHHHHHHHHHHHhcCccee
Q 037878 928 VEKTV-ESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK---PVDKDVIENIKTRVVEEHGVTVA 1003 (2280)
Q Consensus 928 IE~~L-~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~ 1003 (2280)
||++| ..+|+|. ...|+|++++++. ....+++++..++. ...+++.+.+++++.+.+++|..
T Consensus 473 IE~~l~~~~~~v~-~~~~~v~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~ 538 (590)
T 3kxw_A 473 IEFSLMHSPLHHV-LGKCAAFVIQEEH-------------EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVH 538 (590)
T ss_dssp HHHHHHHSGGGGG-EEEEEEEEEEETT-------------EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhcCcccc-CccEEEEEecCCC-------------CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCcee
Confidence 99999 7788875 2347888876542 11222333333332 12367889999999988888877
Q ss_pred EEEEecCCCccCCCCcccchHHHHHHhhcCCCCCC
Q 037878 1004 SVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTV 1038 (2280)
Q Consensus 1004 ~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~~l 1038 (2280)
++.++.+++||+|+||||||++|++++.++.++.+
T Consensus 539 ~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~ 573 (590)
T 3kxw_A 539 TIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIV 573 (590)
T ss_dssp EEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCS
T ss_pred EEEEECCCccCcCCCcHHHHHHHHHHHHcCCCcee
Confidence 77888889999999999999999999998876543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-64 Score=678.81 Aligned_cols=509 Identities=22% Similarity=0.301 Sum_probs=397.7
Q ss_pred CCCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 037878 460 LPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP 539 (2280)
Q Consensus 460 ~~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~ 539 (2280)
.+....|...++.+++++++++. |+++|+++.+. + +++||+||+++++++|++|++. |+++||+|+++++|
T Consensus 13 ~~~~~~p~~~~l~~~l~~~a~~~--p~~~a~~~~~~-~---~~~Ty~el~~~~~~lA~~L~~~---Gv~~gd~V~i~~~~ 83 (536)
T 3ni2_A 13 LPDIYIPKNLPLHSYVLENLSNH--SSKPCLINGAN-G---DVYTYADVELTARRVASGLNKI---GIQQGDVIMLFLPS 83 (536)
T ss_dssp SCCCCCCSSCCHHHHHTTTGGGS--TTSEEEEETTT-C---CEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCS
T ss_pred CCCCCCCCCCcHHHHHHHHhhcC--CCceEEEECCC-C---CEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCC
Confidence 34445666789999999988874 89999875422 2 5899999999999999999998 99999999999999
Q ss_pred CHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCcccccccccc-
Q 037878 540 GLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHTDSWVKN- 617 (2280)
Q Consensus 540 s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 617 (2280)
++++++++|||+++|+++||+++.++.++ +.++++++++++++++......+.... ......+..+.....
T Consensus 84 ~~~~~~~~la~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (536)
T 3ni2_A 84 SPEFVLAFLGASHRGAIITAANPFSTPAE-------LAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGC 156 (536)
T ss_dssp SHHHHHHHHHHHHHTCEEEECCTTCCHHH-------HHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTC
T ss_pred cHHHHHHHHHHHHhCCEEeccCCCCCHHH-------HHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCc
Confidence 99999999999999999999999999998 889999999999999876543322100 001111111110000
Q ss_pred --ccc--cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH----HcCCCCCcEEEEEcCchhhh
Q 037878 618 --SKN--LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK----RYKSTSKTVLVSWLPQYHDM 689 (2280)
Q Consensus 618 --~~~--~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~ 689 (2280)
... .......+.....++|+|||+|||||||.||||++||+++++.+..... .+++.++|++++++|++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 236 (536)
T 3ni2_A 157 LHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIY 236 (536)
T ss_dssp EETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHH
T ss_pred cCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHH
Confidence 000 0011112233467899999999999999999999999999988776543 34678999999999999999
Q ss_pred hHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecC
Q 037878 690 GLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAE 769 (2280)
Q Consensus 690 gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe 769 (2280)
++...++.++..|+++++.+. .++..+++.++++++|++.++|+++..+.+.... ...++++||.+++|||
T Consensus 237 ~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~l~~lr~i~~gGe 307 (536)
T 3ni2_A 237 ALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL-----DKHDLSSLRMIKSGGA 307 (536)
T ss_dssp HHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG-----GGSCCTTCCEEEEESS
T ss_pred HHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc-----ccCCCccceEEEECCC
Confidence 998888999999999998763 3899999999999999999999999888653221 2357899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccC-CCCceeecCCCceeeccccCCCCCceEEEEcCCCCcc
Q 037878 770 PVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYG-QGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEE 848 (2280)
Q Consensus 770 ~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~-~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~ 848 (2280)
++++++.++|.+.+ +++.++|.||+||++.+++.... ...+ .....+++|+|+++++++|+|++++.
T Consensus 308 ~l~~~~~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~~~~i~d~~~~~- 375 (536)
T 3ni2_A 308 PLGKELEDTVRAKF-----PQARLGQGYGMTEAGPVLAMCLAFAKEP------FDIKPGACGTVVRNAEMKIVDPETGA- 375 (536)
T ss_dssp CCCHHHHHHHHHHC-----TTSEEEEEEECGGGSSEEEECGGGSSSC------CCCCTTCCCEECSSCEEEEECTTTCC-
T ss_pred CCCHHHHHHHHHHC-----CCCCccccccccccchhhhcccccCCcc------ccCCCCCeeEeCCCcEEEEEeCCCCc-
Confidence 99999999999875 57889999999999976654321 1111 12235789999999999999977654
Q ss_pred cCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHH
Q 037878 849 IGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSAD 927 (2280)
Q Consensus 849 ~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~E 927 (2280)
.+|.|+.|||+|+||++++||||+|+.|+++|.. ++||||||+|+++ ||.|+|+||+|||||++|+||+|.|
T Consensus 376 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 448 (536)
T 3ni2_A 376 SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK-------EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE 448 (536)
T ss_dssp BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT-------TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHH
T ss_pred CCCCCCccEEEEeCcccchhhcCChhHHHhhccC-------CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHH
Confidence 4589999999999999999999999999999853 5899999999997 9999999999999999999999999
Q ss_pred HHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcceeEEE
Q 037878 928 VEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTVASVK 1006 (2280)
Q Consensus 928 IE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~ 1006 (2280)
||++|.+||+|.+ |+|++++++..+ +...+++ ...++... .+++++.++++|+. + +.|..
T Consensus 449 IE~~l~~~p~V~~---a~Vv~~~~~~~g----------~~~~a~v--v~~~~~~~~~~~l~~~l~~~l~~-~---~~p~~ 509 (536)
T 3ni2_A 449 LEALLIAHPEISD---AAVVGLKDEDAG----------EVPVAFV--VKSEKSQATEDEIKQYISKQVIF-Y---KRIKR 509 (536)
T ss_dssp HHHHHHTSTTEEE---EEEEEEEETTTE----------EEEEEEE--EECTTCCCCHHHHHHHHHTTSCG-G---GCCSE
T ss_pred HHHHHHhCCCcce---EEEEeeecCCCC----------ceeEEEE--EecCCCCCCHHHHHHHHHHhccC-C---ccccE
Confidence 9999999999975 889988775432 1222222 22333322 24555555555443 3 34444
Q ss_pred EecCCCccCCCCcccchHHHHHHhh
Q 037878 1007 LIKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 1007 lv~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
++.+++||+|+||||||++|++++.
T Consensus 510 i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 510 VFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EEECSCCCBCTTSCBCHHHHHTC--
T ss_pred EEEEecCCCCCCCCeeHHHHHHHhc
Confidence 5667999999999999999887653
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-64 Score=679.16 Aligned_cols=500 Identities=19% Similarity=0.283 Sum_probs=379.9
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
...++++.++++ .|+++|+++.++++. .+++||+||+++++++|+.|+++ |+++||+|+++++|++++++++||
T Consensus 57 ~~~~~l~~~a~~--~pd~~Al~~~~~~g~-~~~~Ty~eL~~~~~~~A~~L~~~---Gv~~Gd~V~l~~~~~~e~~~~~lA 130 (580)
T 3etc_A 57 FAYDVVDVYARD--SPEKLAMIWCDDYGN-EKIFTFKDLKYYSDKAANFFVKH---GIGKGDYVMLTLKSRYDFWYCMLG 130 (580)
T ss_dssp HHHHTHHHHHHH--CTTCEEEEEEESSSC-EEEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECTTCTHHHHHHHH
T ss_pred HHHHHHHHHHhh--CCCCEEEEEEcCCCC-EeEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHHH
Confidence 344899998876 489999998776554 37999999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccc--hhhccC--CCCCC--Cccccc-----ccccc-
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYH--SAVRVG--SWPNL--PWLHTD-----SWVKN- 617 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~--~~~~~~--~~~~~--~~~~~~-----~~~~~- 617 (2280)
|+++|+++||+++.++.++ +.++++++++++++++.+.. ..+... ..+.. ..+... .+...
T Consensus 131 ~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (580)
T 3etc_A 131 LHKLGAIAVPATHMLKTRD-------IVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFR 203 (580)
T ss_dssp HHHHTCEEEECCTTCCHHH-------HHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHH
T ss_pred HHhCCEEEEeCCccCCHHH-------HHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHH
Confidence 9999999999999999988 88999999999999976543 111100 00111 001000 00000
Q ss_pred --cccccccc--ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH
Q 037878 618 --SKNLLAEN--VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG 693 (2280)
Q Consensus 618 --~~~~~~~~--~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~ 693 (2280)
........ ........++|+|||+|||||||.||||+++|++++..+.......++.+++++++.+|++|+.+++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (580)
T 3etc_A 204 KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWG 283 (580)
T ss_dssp HHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHH
T ss_pred HHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHH
Confidence 00000000 00112457899999999999999999999999999888877777778899999999999999999887
Q ss_pred HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCH
Q 037878 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQ 773 (2280)
Q Consensus 694 ~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~ 773 (2280)
.++.++..|+++++.++..+ ++..+++.++++++|++.++|++++.+.+. .....++++||.+++|||++++
T Consensus 284 ~~~~~l~~G~~~~~~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------~~~~~~l~~lr~i~~gGe~l~~ 355 (580)
T 3etc_A 284 KLYGQWIAGCAVFVYDYDRF--EAKNMLEKASKYGVTTFCAPPTIYRFLIKE------DLSHYNFSTLKYAVVAGEPLNP 355 (580)
T ss_dssp TTHHHHHTTCEEEEEECSSC--CHHHHHHHHHHHTCCEEEECHHHHHHHHTS------CC---CCTTCCEEEECSSCCCH
T ss_pred HHHHHHhCCcEEEEecCCCC--CHHHHHHHHHHHCCeEEEccHHHHHHHHhc------ccccCCCccceEEEEccCCCCH
Confidence 88999999999998865544 899999999999999999999999888652 1223678999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCC
Q 037878 774 TTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPG 853 (2280)
Q Consensus 774 ~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G 853 (2280)
++.++|.+.+ +++++|.||+||+++.++..... ....+++|+|+||++++|+|+++ ..+|+|
T Consensus 356 ~~~~~~~~~~------g~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~~G~p~~~~~v~ivd~~g--~~~~~g 417 (580)
T 3etc_A 356 EVFNRFLEFT------GIKLMEGFGQTETVVTIATFPWM----------EPKPGSIGKPTPGYKIELMDRDG--RLCEVG 417 (580)
T ss_dssp HHHHHHHHHH------SCCCEEEECCTTSSCCEECCTTS----------CCCTTCCBEECTTCEEEEECTTS--CBCCTT
T ss_pred HHHHHHHHHh------CCeEecccccccccceeecCCCC----------CCCCCccccCCCCCEEEEECCCC--CCCCCC
Confidence 9999999875 56899999999998766543221 12347899999999999999875 456899
Q ss_pred CeeEEEEcC-----CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHH
Q 037878 854 KEGEVWISS-----PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSAD 927 (2280)
Q Consensus 854 ~~GEL~i~G-----p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~E 927 (2280)
+.|||+|+| +++++||+|+|+.|+++|. +|||||||+|+++ ||+|+|+||+|||||++|+||+|.|
T Consensus 418 ~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~--------~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~e 489 (580)
T 3etc_A 418 EEGEIVINTMEGKPVGLFVHYGKDPERTEETWH--------DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFE 489 (580)
T ss_dssp CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE--------TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHH
T ss_pred CceEEEEecCCCCCCeeeccccCCHhHHHhhcC--------CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHH
Confidence 999999997 8899999999999999995 3899999999997 9999999999999999999999999
Q ss_pred HHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEE
Q 037878 928 VEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKL 1007 (2280)
Q Consensus 928 IE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~l 1007 (2280)
||++|.+||+|.+ |+|++++++..++ .+.++ +...++....+++.+.+++.+.+.++.++.|..+
T Consensus 490 IE~~l~~~p~V~~---a~Vvg~~~~~~g~----------~~~a~--vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i 554 (580)
T 3etc_A 490 VESALIQHPAVLE---CAITGVPDPVRGQ----------VIKAT--IVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRII 554 (580)
T ss_dssp HHHHHTTSTTEEE---EEEEEEEETTTEE----------EEEEE--EEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEE
T ss_pred HHHHHHhCCCeee---EEEEeeeccCCCc----------EEEEE--EEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEE
Confidence 9999999999975 8999988764331 22222 2234444444455566666666655555555556
Q ss_pred ecCCCccCCCCcccchHHHHHHhh
Q 037878 1008 IKPRTMSKTTSGKIKRFECLKQFV 1031 (2280)
Q Consensus 1008 v~~~~lP~t~sGKvdR~~L~~~~~ 1031 (2280)
+.+++||+|+||||||++|++++.
T Consensus 555 ~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 555 EFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp EEECC-------------------
T ss_pred EEeCCCCCCCCcCCcHHHHHhHhh
Confidence 666999999999999999988754
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-64 Score=683.75 Aligned_cols=517 Identities=18% Similarity=0.222 Sum_probs=404.6
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++++++ +|+++|+++.+++....+++||+||+++++++|+.|+++ |+++||+|+++++|++|+++++|
T Consensus 76 n~~~~~l~~~a~~--~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~---Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 76 NLAANCLDRHLQE--NGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDL---GIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp CHHHHHTGGGHHH--HTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHH---TCCTTCEEEEECCSSHHHHHHHH
T ss_pred hHHHHHHHHHhcc--CCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHHHHHH
Confidence 3567788877766 489999998754333347899999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh---------hcc--CCCC--CCC-ccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA---------VRV--GSWP--NLP-WLHTDSW 614 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~---------~~~--~~~~--~~~-~~~~~~~ 614 (2280)
||+++|++++|+++.++.++ +.+++++++++++|++...... +.. ...+ ... .+..+..
T Consensus 151 A~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 223 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEA-------VAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRT 223 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSS
T ss_pred HHHHcCcEEEecCCCCCHHH-------HHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCC
Confidence 99999999999999999988 8899999999999997654210 000 0000 111 1111000
Q ss_pred c------cc----ccccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHH-HHHHHcCCCCCcEEEE
Q 037878 615 V------KN----SKNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK-LMRKRYKSTSKTVLVS 681 (2280)
Q Consensus 615 ~------~~----~~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~-~~~~~~~~~~~d~~l~ 681 (2280)
. .. ..+.. ...........++|++||+|||||||+||||+++|++++..+. .....+++.++|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~ 303 (652)
T 1pg4_A 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303 (652)
T ss_dssp CCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 0 00 00000 0111122345679999999999999999999999999877663 4566788999999999
Q ss_pred EcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCc
Q 037878 682 WLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSM 761 (2280)
Q Consensus 682 ~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~L 761 (2280)
++|++|++++...++.+|+.|++++++++.....+|..+++.++++++|++.++|++++.+.+..... ....++++|
T Consensus 304 ~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~~l~sL 380 (652)
T 1pg4_A 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---IEGTDRSSL 380 (652)
T ss_dssp CSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG---TTTCCCTTC
T ss_pred ccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc---cccCCcCce
Confidence 99999999987788999999999999876443458999999999999999999999999887643321 223678999
Q ss_pred cEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEE
Q 037878 762 KFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIV 841 (2280)
Q Consensus 762 r~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Iv 841 (2280)
|.+++|||++++++.+++.+.++ ..++.++|.||+||++..++....... ....+++|+|++|++++|+
T Consensus 381 r~i~~gGe~l~~~~~~~~~~~~g---~~~~~i~~~YG~TE~~~~~~~~~~~~~--------~~~~~s~G~p~~g~~v~i~ 449 (652)
T 1pg4_A 381 RILGSVGEPINPEAWEWYWKKIG---KEKCPVVDTWWQTETGGFMITPLPGAI--------ELKAGSATRPFFGVQPALV 449 (652)
T ss_dssp CEEEEESSCCCHHHHHHHHHHTT---TTCSCEEEEBCCGGGSSCSBCCCTTTC--------CBCTTCCBSBCTTCCEEEE
T ss_pred EEEEEecCCCCHHHHHHHHHHhC---CCCCcEEccccCcccccceecCCCCCc--------CccCCccccCcCCCeEEEE
Confidence 99999999999999999998752 234789999999999876554321111 1234789999999999999
Q ss_pred cCCCCcccCCCCCeeEEEEcC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEE
Q 037878 842 NPETSEEIGEPGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIV 918 (2280)
Q Consensus 842 d~~~~~~~~p~G~~GEL~i~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi 918 (2280)
|+++ ..+|.|+.|||+|+| |++++||||+|+.+.+.|... .+|||||||+|+++ ||+|+|+||+|||||+
T Consensus 450 d~~g--~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~-----~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~ 522 (652)
T 1pg4_A 450 DNEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFST-----FKNMYFSGDGARRDEDGYYWITGRVDDVLNV 522 (652)
T ss_dssp CTTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSS-----STTSEEEEEEEEECTTSCEEEEEESSSEEEE
T ss_pred CCCC--CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhc-----CCCEEECCcEEEEcCCCcEEEEecCCCEEEE
Confidence 9875 345789999999999 799999999999998887531 24799999999997 9999999999999999
Q ss_pred CCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhc
Q 037878 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEH 998 (2280)
Q Consensus 919 ~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~ 998 (2280)
+|+||+|.|||++|.+||+|.+ |+|++++++..+ + ..++++...++...++++.+.+++.+.+++
T Consensus 523 ~G~rI~~~eIE~~l~~~p~V~e---a~Vvg~~~~~~g----------~--~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l 587 (652)
T 1pg4_A 523 SGHRLGTAEIESALVAHPKIAE---AAVVGIPHAIKG----------Q--AIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587 (652)
T ss_dssp TTEEEEHHHHHHHHHHSTTEEE---EEEEEEEETTTE----------E--EEEEEEEECTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCEEECHHHHHHHHHhCCCcce---EEEEEEEcCCCC----------e--EEEEEEEECCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999975 899998775432 1 122233334444444455666777777666
Q ss_pred CcceeEEEEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 999 GVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 999 ~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
+.++.|..++.+++||+|+||||||++|++.+.+.
T Consensus 588 ~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 588 GPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp CGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred CCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 65666666777799999999999999999988654
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-64 Score=667.81 Aligned_cols=491 Identities=23% Similarity=0.344 Sum_probs=382.4
Q ss_pred HHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHHH
Q 037878 473 GYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMR 552 (2280)
Q Consensus 473 ~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l~ 552 (2280)
+++++.+++. |++.++...+.++ +++||+||+++++++|+.|+++ |+++||+|+++++|++++++++|||++
T Consensus 4 ~l~~~~a~~~--p~~~a~~~~~~~~---~~~Ty~eL~~~~~~lA~~L~~~---Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 75 (503)
T 4fuq_A 4 NLFARLFDKL--DDPHKLAIETAAG---DKISYAELVARAGRVANVLVAR---GLQVGDRVAAQTEKSVEALVLYLATVR 75 (503)
T ss_dssp CHHHHHHSCC--SCTTSEEEEETTC---CEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHhC--CCCceEEEecCCC---cEEEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 3677777775 5555555443333 5799999999999999999998 999999999999999999999999999
Q ss_pred cCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCcccccccccc---ccccccccccc
Q 037878 553 AKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHTDSWVKN---SKNLLAENVVC 628 (2280)
Q Consensus 553 aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~ 628 (2280)
+|+++||+++.+|.++ +.++++++++++++++......+.... ............... ...........
T Consensus 76 ~Ga~~vpl~~~~~~~~-------l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (503)
T 4fuq_A 76 AGGVYLPLNTAYTLHE-------LDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFA 148 (503)
T ss_dssp TTCEEEECCTTCCHHH-------HHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCC
T ss_pred cCcEEEecCCCCCHHH-------HHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcC
Confidence 9999999999999998 889999999999999875433211000 000000000000000 00000111112
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++|+|||+|||||||.||||++||+++.+.+......++++++|++++++|++|++++...++.+++.|+++++.
T Consensus 149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 228 (503)
T 4fuq_A 149 TIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL 228 (503)
T ss_dssp CCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC
T ss_pred cCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc
Confidence 23457899999999999999999999999999999999999999999999999999999999766778889999999887
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
+. .+|..+++.++ ++|++.++|+++..+++.... ...+++++|.+++|||++++++.++|.+.+
T Consensus 229 ~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~----- 292 (503)
T 4fuq_A 229 PK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL-----TKETTGHMRLFISGSAPLLADTHREWSAKT----- 292 (503)
T ss_dssp SS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC-----STTTTTTCCEEEECSSCCCHHHHHHHHHHH-----
T ss_pred CC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc-----cccchhhcEEEEECCCCCCHHHHHHHHHHh-----
Confidence 63 38999999987 899999999999888754322 235678999999999999999999999875
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
++.++|.||+||+++.++.... +....+++|+|+|+++++|+|++++. .+|+|+.|||+|+||++++|
T Consensus 293 -~~~~~~~YG~TE~~~~~~~~~~----------~~~~~~~~G~p~~~~~~~i~d~~~g~-~~~~g~~GEl~v~g~~v~~G 360 (503)
T 4fuq_A 293 -GHAVLERYGMTETNMNTSNPYD----------GDRVPGAVGPALPGVSARVTDPETGK-ELPRGDIGMIEVKGPNVFKG 360 (503)
T ss_dssp -SCCEEECCEETTTEECBCCCSS----------SCCCTTEEEEBCTTCEEEEECTTTCC-BCCTTCCEEEEEESTTSCCC
T ss_pred -CCCccceEcccccCcccccCCC----------CCCcCCccccCCCCeEEEEEECCCCC-CCcCCCceEEEEECCchhhh
Confidence 4679999999999876542211 12234678999999999999976554 45899999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEE
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv 947 (2280)
|||+|+.|+++|.. ++||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.+||+|.+ |+|+
T Consensus 361 Y~~~~~~t~~~f~~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~---a~vv 430 (503)
T 4fuq_A 361 YWRMPEKTKSEFRD-------DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVE---SAVI 430 (503)
T ss_dssp BTTCHHHHHHTBCT-------TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEE---EEEE
T ss_pred hcCChhhhHhhhCC-------CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeE---EEEE
Confidence 99999999999964 4899999999997 99999999999999999999999999999999999975 8899
Q ss_pred eccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHH
Q 037878 948 GVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFEC 1026 (2280)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L 1026 (2280)
+++++..+ +.+.+++ ...++...+ +++++.++++|+. +++| ..++.+++||+|+||||||++|
T Consensus 431 ~~~~~~~~----------~~~~a~v--~~~~~~~~~~~~l~~~l~~~L~~-~~~P---~~i~~v~~lP~t~~GKi~R~~L 494 (503)
T 4fuq_A 431 GVPHADFG----------EGVTAVV--VRDKGATIDEAQVLHGLDGQLAK-FKMP---KKVIFVDDLPRNTMGKVQKNVL 494 (503)
T ss_dssp EEEETTTE----------EEEEEEE--EECTTCCCCHHHHHHHHBTTBCG-GGCC---SEEEEESCCCBCTTSCBCHHHH
T ss_pred EeEchhcC----------ceeEEEE--EeCCCCCCCHHHHHHHHHhhccc-CCCC---CEEEEECCCCCCcccceeHHHH
Confidence 88775432 1222222 233333333 4555666655543 4444 3444559999999999999999
Q ss_pred HHHhhc
Q 037878 1027 LKQFVD 1032 (2280)
Q Consensus 1027 ~~~~~~ 1032 (2280)
+++|.+
T Consensus 495 ~~~~~~ 500 (503)
T 4fuq_A 495 RETYKD 500 (503)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 998754
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-64 Score=679.01 Aligned_cols=513 Identities=21% Similarity=0.287 Sum_probs=367.9
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCC--CceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEE--GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVD 545 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~--g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~v 545 (2280)
..++.+++++++++. |+++|+.+.+.+ ....+++||+||+++++++|+.|+++ |+++||+|+++++|++++++
T Consensus 18 ~~~l~~~l~~~a~~~--p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~---Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 18 KISLADRIDAAAEKF--GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK---GVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCTTHHHHHHHHHH--TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSHHHHH
T ss_pred CCCHHHHHHHHHHhC--CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHH
Confidence 467889999988874 899999887632 11236899999999999999999998 99999999999999999999
Q ss_pred HHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-CCCCCCcc-ccccccccccccc-
Q 037878 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-SWPNLPWL-HTDSWVKNSKNLL- 622 (2280)
Q Consensus 546 a~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~- 622 (2280)
++|||+++|+++||+++.+|.++ +.++++++++++++++.......... .......+ ..........+..
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~-------l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFE-------LEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMD 165 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHH-------HHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHH
T ss_pred HHHHHHHhCCEEEccCCCCCHHH-------HHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHh
Confidence 99999999999999999999998 88999999999999987654432210 00001110 0000000000000
Q ss_pred -cccccccCCCCC-CCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 623 -AENVVCFTESQP-DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 623 -~~~~~~~~~~~~-~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
...........+ +|+|||+|||||||.||||+++|+++++.+......+++.++|++++++|++|++++.. ++.++.
T Consensus 166 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~ 244 (549)
T 3g7s_A 166 SGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVT 244 (549)
T ss_dssp HSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHH
T ss_pred cCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHh
Confidence 001111222334 89999999999999999999999999999999999999999999999999999999865 788899
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|+++++.+. .++..+++.++++++|++.++|+++..+.+....... ..+++++|.+++|||++++++.+++.
T Consensus 245 ~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~~~~~~lr~~~~gg~~l~~~~~~~~~ 317 (549)
T 3g7s_A 245 VGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK---TYDWSYLKVFATGAWPVAPALVEKLL 317 (549)
T ss_dssp HCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC---CCCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred cCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc---cCCccceeEEEeCCccCCHHHHHHHH
Confidence 9999998762 3899999999999999999999999999877654432 25688999999999999999999998
Q ss_pred HHhc-CCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEE
Q 037878 781 ELTR-PFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859 (2280)
Q Consensus 781 ~~~~-~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~ 859 (2280)
+.+. .++.+.+.++|.||+||++++++...... ....+++|+|+++++++|+|++++. .+|.|+.|||+
T Consensus 318 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~d~~~g~-~~~~g~~GEl~ 387 (549)
T 3g7s_A 318 KLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR---------LDKSTTQGVPMSDIELKVISLEDGR-ELGVGESGEIV 387 (549)
T ss_dssp HHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG---------GGGTTSCCEECTTCEEEEECSSSCC-EECTTCCEEEE
T ss_pred HHHHhhcCCccccccceEeccccchhhhcCCccc---------cCcCCCccccCCCCEEEEEeCCCCc-CCCCCCceEEE
Confidence 8621 12335588999999999998776543211 1124678999999999999966554 45799999999
Q ss_pred EcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 860 i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
|+||++++||||+|+.|+++|..+ .++.+||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.+||+|
T Consensus 388 v~g~~v~~GY~~~~~~t~~~f~~~---~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 464 (549)
T 3g7s_A 388 IRGPNIFKGYWKREKENQECWWYD---EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAV 464 (549)
T ss_dssp EESTTSCSEETTCTTGGGTSEEEC---TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTE
T ss_pred EECcchhhhhCCChhhhhhhhhcc---CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCe
Confidence 999999999999999999999532 2456799999999997 999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecCC---CCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccC
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDG---KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSK 1015 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~ 1015 (2280)
.+ |+|++.+++..++ ...++++ . .++ ....++++++++++|+. |++|. .++.+++||+
T Consensus 465 ~~---a~Vv~~~~~~~g~---------~~~a~vv-~--~~~~~~~~~~~~l~~~l~~~L~~-~~~P~---~i~~v~~lP~ 525 (549)
T 3g7s_A 465 MD---VAVIGKPDEEAGE---------VPKAFIV-L--KPEYRGKVDEEDIIEWVRERISG-YKRVR---EVEFVEELPR 525 (549)
T ss_dssp EE---EEEECCCC---------------CEEEEE-E--CSTTTTSCCHHHHHHHHHTTCC------C---CCCEEEECC-
T ss_pred ee---EEEEeeEccccCc---------eEEEEEE-E--CCCccCcCCHHHHHHHHHHhccC-cccce---EEEEeccCCC
Confidence 75 8999887764321 2223333 2 222 22335566666666553 44443 3444589999
Q ss_pred CCCcccchHHHHHHhhc
Q 037878 1016 TTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1016 t~sGKvdR~~L~~~~~~ 1032 (2280)
|+||||||++|++++.+
T Consensus 526 t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 526 TASGKLLRRLLREKEAE 542 (549)
T ss_dssp -----------------
T ss_pred CCCcCEeHHHHHHHhhc
Confidence 99999999998887543
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-64 Score=667.35 Aligned_cols=498 Identities=22% Similarity=0.299 Sum_probs=391.8
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
.+...++.+++++++++. |+++|+.+.+. .+++||+||+++++++|+.|+++ |+++||+|+++++|+++++
T Consensus 12 ~~~~~~l~~~l~~~a~~~--p~~~A~~~~~~----~~~~Ty~eL~~~~~~lA~~L~~~---Gv~~gd~V~i~~~~~~~~~ 82 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVS--PRLQAYVEPST----DVRMTYAQMNALANRCADVLTAL---GIAKGDRVALLMPNSVEFC 82 (517)
T ss_dssp CGGGGCHHHHHHHHHHHS--TTSEEEEEGGG----TEEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSHHHH
T ss_pred cccccCHHHHHHHHHHhC--CCCeEEEeCCc----CceeeHHHHHHHHHHHHHHHHHc---CCCCcCEEEEEcCCCHHHH
Confidence 345678999999998874 89999986532 14899999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCC-ccccccccccccc-
Q 037878 545 DAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLP-WLHTDSWVKNSKN- 620 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~- 620 (2280)
+++|||+++|+++||+++.+|.++ +.++++++++++++++......+... ...... .+...........
T Consensus 83 ~~~lA~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (517)
T 3r44_A 83 CLFYGAAKLGAVAVPINTRLAAPE-------VSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERL 155 (517)
T ss_dssp HHHHHHHHHTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHH
T ss_pred HHHHHHHHhCcEEEecCcccCHHH-------HHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHh
Confidence 999999999999999999999998 88999999999999987654332110 001110 1111000000000
Q ss_pred cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHH
Q 037878 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMV 700 (2280)
Q Consensus 621 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~ 700 (2280)
.......+.....++|++||+|||||||.||||++||+++.+.+......+++.++|++++++|++|++++...++..+
T Consensus 156 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~- 234 (517)
T 3r44_A 156 RSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM- 234 (517)
T ss_dssp HHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-
T ss_pred hccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-
Confidence 0011112233467899999999999999999999999999999999999999999999999999999999866555555
Q ss_pred ccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 037878 701 GGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFV 780 (2280)
Q Consensus 701 ~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~ 780 (2280)
.|+++++.+. .++..+++.++++++|++.++|+++..+.+...... .++++||.+++|||++++++.++|.
T Consensus 235 ~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~lr~i~~gGe~l~~~~~~~~~ 305 (517)
T 3r44_A 235 RGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE-----LDAPDFRYFITGGAPMPEALIKIYA 305 (517)
T ss_dssp HTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHH-----CCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred cCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccccc-----CCCCcccEEEECCCCCCHHHHHHHH
Confidence 8888888753 389999999999999999999999998876543222 5688999999999999999999988
Q ss_pred HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEE
Q 037878 781 ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860 (2280)
Q Consensus 781 ~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i 860 (2280)
+. +++++|.||+||+++.++....... ....+++|+|+++++++|+|+++ ..++.| .|||+|
T Consensus 306 ~~-------~~~~~~~YG~TE~~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~d~~~--~~~~~g-~GEl~v 367 (517)
T 3r44_A 306 AK-------NIEVVQGYALTESCGGGTLLLSEDA--------LRKAGSAGRATMFTDVAVRGDDG--VIREHG-EGEVVI 367 (517)
T ss_dssp HT-------TCEEEEEEECGGGTTCEEEECGGGT--------TTTTTCCBEECTTEEEEEECTTS--CEESSE-EEEEEE
T ss_pred hc-------CCcEEEeecccccccceeecCCccc--------cccCCCCCcCCCCeEEEEECCCC--CCCCCC-CeEEEE
Confidence 74 5689999999999887665432110 11246789999999999999875 344677 899999
Q ss_pred cCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCc
Q 037878 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHI 939 (2280)
Q Consensus 861 ~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~ 939 (2280)
+||++++||||+|+.|+++|. +|||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.+||+|.
T Consensus 368 ~g~~v~~GY~~~p~~t~~~f~--------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 439 (517)
T 3r44_A 368 KSDILLKEYWNRPEATRDAFD--------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVS 439 (517)
T ss_dssp EETTSCSEETTCHHHHHHTEE--------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEE
T ss_pred eCcchhhhhCCChhhhHhhhc--------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEe
Confidence 999999999999999999994 3899999999997 9999999999999999999999999999999999997
Q ss_pred CCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCc
Q 037878 940 RPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSG 1019 (2280)
Q Consensus 940 ~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sG 1019 (2280)
+ |+|++.+++..+ ..+.+++ .. .......+++.++++++|+. +++| ..++.+++||+|+||
T Consensus 440 ~---~~Vv~~~~~~~g----------~~~~a~v-~~-~~~~~~~~~l~~~l~~~L~~-~~~P---~~i~~v~~lP~t~~G 500 (517)
T 3r44_A 440 E---VAVIGLPDEKWG----------EIAAAIV-VA-DQNEVSEQQIVEYCGTRLAR-YKLP---KKVIFAEAIPRNPTG 500 (517)
T ss_dssp E---EEEEEEEETTTE----------EEEEEEE-EE-CTTTCCHHHHHHHHHHHSCG-GGSC---SEEEECSCCCBCTTC
T ss_pred E---EEEEeccccccC----------ceEEEEE-EC-CCCCCCHHHHHHHHHHhCCC-CCCC---CEEEEECCCCCCCCc
Confidence 5 889988775432 2223333 22 22223335666667666654 4444 445566999999999
Q ss_pred ccchHHHHHHhhcC
Q 037878 1020 KIKRFECLKQFVDG 1033 (2280)
Q Consensus 1020 KvdR~~L~~~~~~~ 1033 (2280)
||||++|+++|.+.
T Consensus 501 Ki~R~~L~~~~~~~ 514 (517)
T 3r44_A 501 KILKTVLREQYSAT 514 (517)
T ss_dssp CBCHHHHHHHHGGG
T ss_pred CccHHHHHHHHHhh
Confidence 99999999998654
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-64 Score=666.54 Aligned_cols=505 Identities=19% Similarity=0.276 Sum_probs=396.7
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
+++.+++++++++. |+++|+.+.+ +++||+||+++++++|++|+++ |+++||+|+++++|++++++++|
T Consensus 1 m~l~~~l~~~a~~~--p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~---g~~~gd~V~i~~~n~~e~~~~~l 69 (512)
T 3fce_A 1 MKLLEQIEKWAAET--PDQTAFVWRD------AKITYKQLKEDSDALAHWISSE---YPDDRSPIMVYGHMQPEMIINFL 69 (512)
T ss_dssp CCHHHHHHHHHHHS--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHH---STTCCCCEEEEESSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHC--CCceEEEeCC------ceEEHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEeCCCHHHHHHHH
Confidence 46788999988874 8999998643 5899999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+++|+++||+++.++.++ +.++++++++++++++....... ........+.+..............
T Consensus 70 a~~~~G~v~vpl~~~~~~~~-------l~~il~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (512)
T 3fce_A 70 GCVKAGHAYIPVDLSIPADR-------VQRIAENSGAKLLLSATAVTVTD-----LPVRIVSEDNLKDIFFTHKGNTPNP 137 (512)
T ss_dssp HHHHTTCCEEEEETTSCHHH-------HHHHHHHSCCCEEEESSCCCSSC-----CSSEEEETHHHHHHHHHTTTCCCCG
T ss_pred HHHHhCCEEEeeCCCCcHHH-------HHHHHHhcCCCEEEecCcccccc-----cccceechhhhhhhcccccccCCCc
Confidence 99999999999999999988 88999999999999874322110 0011111111100000000111112
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++|++||+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|+++++ .++.+++.|+++++.
T Consensus 138 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 138 EHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWAI 216 (512)
T ss_dssp GGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEEEEC
T ss_pred cccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEEEEC
Confidence 3346789999999999999999999999999999999999999999999999999999999974 689999999999987
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
++. ...+|..+++.++++++|++.++|+++..++..... ...+++++|.+++|||++++++.++|.+.+
T Consensus 217 ~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~----- 285 (512)
T 3fce_A 217 DKD-MIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF-----SESMLPNMKTFLFCGEVLPNEVARKLIERF----- 285 (512)
T ss_dssp CHH-HHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC-----STTTSTTCCEEEECSSCCCHHHHHHHHHHC-----
T ss_pred CHH-HhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc-----cchhCccccEEEEecCcCCHHHHHHHHHHC-----
Confidence 653 234899999999999999999999999877643221 235688999999999999999999999885
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
+++.++|.||+||+++.++......... .....+++|+|+++++++|+|+++ ..+|+|+.|||+|+||+++.|
T Consensus 286 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~-----~~~~~~~~G~~~~~~~~~i~d~~g--~~~~~g~~GEl~v~g~~v~~G 358 (512)
T 3fce_A 286 PKATIMNTYGPTEATVAVTGIHVTEEVL-----DQYKSLPVGYCKSDCRLLIMKEDG--TIAPDGEKGEIVIVGPSVSVG 358 (512)
T ss_dssp TTCEEEEEECCGGGSSCSEEEECCHHHH-----HHCSSCCCEEECTTCEEEEECSSS--CBCCTTSCEEEEEESTTSCSC
T ss_pred CCCEEEeCcccChhhhheeeEEeccccc-----cccCCCccccccCCcEEEEECCCC--CCCCCCCeEEEEEeccccChh
Confidence 5788999999999998766432211000 011235689999999999999765 456899999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEe
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~ 948 (2280)
|||+|+.|+++|.. .++++||||||+|+++||.|+|+||+||+||++|+||+|.|||++|.+||+|.+ |+|++
T Consensus 359 Y~~~~~~t~~~f~~----~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~---a~vv~ 431 (512)
T 3fce_A 359 YLGSPELTEKAFTM----IDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEG---AVIVP 431 (512)
T ss_dssp BTTCHHHHHHHEEE----ETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEE---EEEEE
T ss_pred hcCCchhhhhcccc----CCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcce---EEEEE
Confidence 99999999999953 235689999999999999999999999999999999999999999999999975 88888
Q ss_pred ccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
++++..+ +.+ ++++...++.... .++.+.+++.+.+.++.++.|..++.+++||+|+||||||++|+
T Consensus 432 ~~~~~~~----------~~~--~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~ 499 (512)
T 3fce_A 432 IKKGEKY----------DYL--LAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLL 499 (512)
T ss_dssp EEETTEE----------EEE--EEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHH
T ss_pred EecCCCc----------eEE--EEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHH
Confidence 7664322 112 2222233332222 34566677777776666666667777899999999999999999
Q ss_pred HHhhcCC
Q 037878 1028 KQFVDGT 1034 (2280)
Q Consensus 1028 ~~~~~~~ 1034 (2280)
+.+.+..
T Consensus 500 ~~~~~~~ 506 (512)
T 3fce_A 500 SEVTALE 506 (512)
T ss_dssp HHHHC--
T ss_pred hhhhhcc
Confidence 9986643
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-64 Score=669.35 Aligned_cols=494 Identities=21% Similarity=0.289 Sum_probs=392.2
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++++++. |+++|+.+.+ +++||+||+++++++|+.|+++ |+++||+|+++++|++++++++
T Consensus 24 ~~tl~~~l~~~a~~~--p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~~~---Gv~~gd~V~i~~~~~~~~~~~~ 92 (539)
T 1mdb_A 24 GETFGDLLRDRAAKY--GDRIAITCGN------THWSYRELDTRADRLAAGFQKL---GIQQKDRVVVQLPNIKEFFEVI 92 (539)
T ss_dssp SCCHHHHHHHHHHHH--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHH---TCCTTCEEEECCCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHC--CCCEEEEeCC------CcccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcHHHHHHH
Confidence 358999999988874 8999997532 5899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch--------hhccCCCCCCCcccc-ccc--cc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS--------AVRVGSWPNLPWLHT-DSW--VK 616 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~--------~~~~~~~~~~~~~~~-~~~--~~ 616 (2280)
|||+++|+++||+++.++.++ +.++++++++++++++..... .+.. ..+....+.. ... ..
T Consensus 93 lA~~~~Ga~~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (539)
T 1mdb_A 93 FALFRLGALPVFALPSHRSSE-------ITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS-KLPTLKNIIVAGEAEEFL 164 (539)
T ss_dssp HHHHHHTCEEEECCTTCCHHH-------HHHHHHHTTCSEEEEESEETTEEHHHHHHHHHH-HCTTCCCEEEESCCTTSE
T ss_pred HHHHHcCeEEecCCCCCCHHH-------HHHHHHhCCCCEEEeccccccccHHHHHHHHHh-cCCCccEEEEcCCccchh
Confidence 999999999999999999888 889999999999999765321 1110 0111111111 000 00
Q ss_pred cccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHH-HH
Q 037878 617 NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIG-GL 695 (2280)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~i 695 (2280)
.... ............++|+|||+|||||||+||||++||+++++.+......++++++|++++++|++|++++.. .+
T Consensus 165 ~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 243 (539)
T 1mdb_A 165 PLED-LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGV 243 (539)
T ss_dssp EGGG-CCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhh-ccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHH
Confidence 0000 001111223457899999999999999999999999999999998888899999999999999999999865 78
Q ss_pred HHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHH
Q 037878 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTT 775 (2280)
Q Consensus 696 ~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l 775 (2280)
+.+|+.|+++++.+. .+|..+++.++++++|++.++|+++..+++...... .++++||.+++|||++++++
T Consensus 244 ~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~l~~lr~~~~gG~~l~~~~ 314 (539)
T 1mdb_A 244 LGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-----DDLSSLQVLQVGGAKFSAEA 314 (539)
T ss_dssp HHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-----CCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-----CCccceeEEEEcCCCCCHHH
Confidence 999999999998753 389999999999999999999999999887654332 56899999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCc-eEEEEcCCCCcccCCCCC
Q 037878 776 VKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDV-DIRIVNPETSEEIGEPGK 854 (2280)
Q Consensus 776 ~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~-~v~Ivd~~~~~~~~p~G~ 854 (2280)
.++|.+.+ ++.++|.||+||+++.++.... + .....+++|+|+++. +++|+|+++ ..+|.|+
T Consensus 315 ~~~~~~~~------~~~~~~~YG~TE~~~~~~~~~~---~------~~~~~~~~G~p~~~~~~~~i~d~~~--~~~~~g~ 377 (539)
T 1mdb_A 315 ARRVKAVF------GCTLQQVFGMAEGLVNYTRLDD---P------EEIIVNTQGKPMSPYDESRVWDDHD--RDVKPGE 377 (539)
T ss_dssp HTTHHHHT------CSEEEEEEECTTSCEEECCTTS---C------HHHHHHCCCEESSTTCEEEEECTTS--CBCCTTC
T ss_pred HHHHHHHh------CCcEEEEEcCCCCcccccCCCC---c------HHhcCCCCCcccCCCceEEEECCCC--CCCcCCC
Confidence 99998874 4689999999997654332111 0 012346789999765 899999775 4568999
Q ss_pred eeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHH
Q 037878 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVE 933 (2280)
Q Consensus 855 ~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~ 933 (2280)
.|||+|+||++++||||+|+.|+++|.. ++||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.
T Consensus 378 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~-------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 450 (539)
T 1mdb_A 378 TGHLLTRGPYTIRGYYKAEEHNAASFTE-------DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450 (539)
T ss_dssp CEEEEEECTTSCSSCTTCHHHHHHHBCT-------TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT
T ss_pred cceEEeeCcccchhhcCChhhhhhhccC-------CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH
Confidence 9999999999999999999999999964 4899999999997 9999999999999999999999999999999
Q ss_pred hccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhcCcceeEEEEecCCC
Q 037878 934 SSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTR-VVEEHGVTVASVKLIKPRT 1012 (2280)
Q Consensus 934 ~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~~~~~lv~~~~ 1012 (2280)
+||+|.+ |+|++.+++..++ .+.+++ ...+.....+++.+.++++ |+. |++| ..++.+++
T Consensus 451 ~~p~V~~---a~vv~~~~~~~g~----------~~~a~v--v~~~~~~~~~~l~~~l~~~~L~~-~~~P---~~i~~v~~ 511 (539)
T 1mdb_A 451 AHPAVHD---AAMVSMPDQFLGE----------RSCVFI--IPRDEAPKAAELKAFLRERGLAA-YKIP---DRVEFVES 511 (539)
T ss_dssp TSTTEEE---EEEEEEEETTTEE----------EEEEEE--EESSSCCCHHHHHHHHHHTTCCG-GGSC---SEEEECSS
T ss_pred hCCCcce---EEEEeccccccCc----------eEEEEE--EECCCCCCHHHHHHHHHhCCCCc-ccCC---CEEEEecc
Confidence 9999975 8899887754331 122222 2232222335666666665 443 4444 44555699
Q ss_pred ccCCCCcccchHHHHHHhhcC
Q 037878 1013 MSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1013 lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
||+|+||||||++|++++.+.
T Consensus 512 lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 512 FPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp CCBCTTSCBCHHHHHHHHHHH
T ss_pred CCCCCCcCEeHHHHHHHHHHH
Confidence 999999999999999987654
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-64 Score=680.90 Aligned_cols=495 Identities=20% Similarity=0.231 Sum_probs=321.3
Q ss_pred CCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHH
Q 037878 466 PELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVD 545 (2280)
Q Consensus 466 ~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~v 545 (2280)
+...++.+++++++++. |+++|+.+.+ +++||+||+++++++|++|+++ |+++||+|+++++|++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~--pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n~~~~~~ 140 (570)
T 4gr5_A 72 PAGACVHELFEAQAARA--PDAVALLHEA------DELTYGALNERANRLAHRLVGL---GVAPGTLVGVHLERGFDMVV 140 (570)
T ss_dssp CCSCCHHHHHHHHHHHC--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSHHHHH
T ss_pred CccCCHHHHHHHHHHHC--CCCeEEECCC------CcEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHHH
Confidence 34678999999998874 8999998632 5899999999999999999998 99999999999999999999
Q ss_pred HHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccccc
Q 037878 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAEN 625 (2280)
Q Consensus 546 a~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (2280)
++|||+++|+++||+++.++.++ +.++++++++++++++......+. ....+...+. .......
T Consensus 141 ~~lA~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~----~~~~~~~ 204 (570)
T 4gr5_A 141 ALLAVLKAGGGYTMLDPQFPVER-------LALSLEDTGAPLLVTSRPLSGRLT-----GTTTLYVEDE----AASDAPA 204 (570)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEECTTTTTSSC-----SSEEEECCC-----------C
T ss_pred HHHHHHHHCCEEEEcCCCChHHH-------HHHHHHhcCCCEEEecchhhhccc-----CCcceeeecc----ccccccc
Confidence 99999999999999999999888 889999999999999865433221 1111111000 0000111
Q ss_pred ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceE
Q 037878 626 VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTA 705 (2280)
Q Consensus 626 ~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~ 705 (2280)
........++|+|||+|||||||.||||++||+++.+.+.. ...+++.+++++++++|++|+.+. ..++.+++.|+++
T Consensus 205 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~ 282 (570)
T 4gr5_A 205 GNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARC 282 (570)
T ss_dssp CCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEE
T ss_pred cccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEE
Confidence 11223467899999999999999999999999999876654 345678899999999999998776 4688899999999
Q ss_pred EEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcC
Q 037878 706 ILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785 (2280)
Q Consensus 706 vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~ 785 (2280)
++.++.. .+|..+++.++++++|++.++|+++..+.+... .++++||.+++|||++++++++++.+.+
T Consensus 283 v~~~~~~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~-- 350 (570)
T 4gr5_A 283 VLQSGQN--PDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--------EAFEGVRYAITGGEPASVPHVAKARRDH-- 350 (570)
T ss_dssp EECSSSS--CCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG--------GGGTTCSEEEEESSCCCHHHHHHHHHHC--
T ss_pred EEcCCcc--CCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch--------hhCCCceEEEEecccCCHHHHHHHHHhC--
Confidence 9876543 389999999999999999999999998876432 3478999999999999999999999875
Q ss_pred CCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCc
Q 037878 786 FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSA 865 (2280)
Q Consensus 786 ~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v 865 (2280)
+++.++|.||+||++++++........ ......++|+|+++++++|+|+++ ..+|.|++|||+|+||++
T Consensus 351 ---~~~~l~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~iG~p~~~~~v~i~d~~~--~~~~~G~~GEl~v~g~~v 419 (570)
T 4gr5_A 351 ---PALRLGNGYGPAESMGFTTHHAVVAGD------LSGTALPIGVPLAGKRAYVLDDDL--KPAANGALGELYVAGAGL 419 (570)
T ss_dssp ---TTCEEEEEECCGGGCSCSEEEECCGGG------TTSSSCCCBEECTTEEEEEECTTS--CBCCTTCEEEEEEEETTC
T ss_pred ---CCcEEEEeechhhheeeeeeeeecccc------cCCCccccceeeCCCEEEEECCCC--CCCCCCCcEEEEEeeccc
Confidence 578899999999998876643221110 011235689999999999999775 455799999999999999
Q ss_pred ccccCCCchhhHHHHhhhccC-CCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCce
Q 037878 866 GIGYWGREELSQITFRNELQN-NRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC 943 (2280)
Q Consensus 866 ~~GY~~~p~~t~~~f~~~~~~-~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~ 943 (2280)
++||||+|+.|+++|..+++. .+++|||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 420 ~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~--- 496 (570)
T 4gr5_A 420 AHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQ--- 496 (570)
T ss_dssp CCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------------
T ss_pred chhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcce---
Confidence 999999999999999876543 3567999999999997 99999999999999999999999999999999999976
Q ss_pred eEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccch
Q 037878 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023 (2280)
Q Consensus 944 aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR 1023 (2280)
|+|++.+++..+ ...+++++. .........++++++++++|+. ++ .|..++.+++||+|+||||||
T Consensus 497 a~Vv~~~~~~~~---------~~~~a~vv~-~~~~~~~~~~~l~~~l~~~l~~-~~---~P~~i~~v~~lP~t~~GKi~R 562 (570)
T 4gr5_A 497 AAVLAQDSRLGD---------KQLVAYVVA-ERADAPPDAAELRRHVAEALPA-YM---VPVECVPVDELPRTPNGKLDR 562 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeeCCCCC---------eEEEEEEEe-cCCCCCcCHHHHHHHHHhhCcc-cc---CCcEEEEcccCCCCCCcCcch
Confidence 888887665322 122333332 1111122234666777776654 44 444556679999999999999
Q ss_pred HHHHHH
Q 037878 1024 FECLKQ 1029 (2280)
Q Consensus 1024 ~~L~~~ 1029 (2280)
++|++.
T Consensus 563 ~~L~~~ 568 (570)
T 4gr5_A 563 RALTGS 568 (570)
T ss_dssp ------
T ss_pred Hhhhcc
Confidence 987653
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-63 Score=659.15 Aligned_cols=502 Identities=20% Similarity=0.230 Sum_probs=399.3
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
+++.+++++++++. |+++|+.+.+ +++||+||+++++++|+.|+++. |+++||+|+++++|++++++++|
T Consensus 1 m~l~~~l~~~a~~~--p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~~~~--~~~~g~~V~i~~~n~~~~~~~~l 70 (511)
T 3e7w_A 1 MKLLHAIQTHAETY--PQTDAFRSQG------QSLTYQELWEQSDRAAAAIQKRI--SGEKKSPILVYGHMEPHMIVSFL 70 (511)
T ss_dssp CCHHHHHHHHHHHS--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHTTTS--CSSSCCCEEEEESSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHC--CCCeEEEcCC------ceeeHHHHHHHHHHHHHHHHHhc--CCCCCCeEEEEecCCHHHHHHHH
Confidence 46788999888874 8999997532 58999999999999999998753 78899999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+++|+++||+++.++.++ +.++++++++++++++......... .....+...++.... ......
T Consensus 71 A~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~ 136 (511)
T 3e7w_A 71 GSVKAGHPYIPVDLSIPSER-------IAKIIESSGAELLIHAAGLSIDAVG---QQIQTVSAEELLENE----GGSVSQ 136 (511)
T ss_dssp HHHHHTCCEEEEETTSCHHH-------HHHHHHHHTCCEEEESSSCCTTCCC---CSSCEEEHHHHHTSC----SCCCCG
T ss_pred HHHHhCCEEEecCCCChHHH-------HHHHHHhCCCCEEEecccccchhcc---cccceecHhhhhccc----cCCccc
Confidence 99999999999999999988 8899999999999986543211110 111111111111110 011112
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++|++||+|||||||.||||++||+++.+.+.+....+++.+++++++++|++|++++ ..++.++..|+++++.
T Consensus 137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCV 215 (511)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEEC
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEc
Confidence 234568999999999999999999999999999999999999999999999999999999997 4689999999999887
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
+... ..+|..+++.++++++|++.++|+++..++..... ...+++++|.+++|||++++++.+++.+.+
T Consensus 216 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~----- 284 (511)
T 3e7w_A 216 TKDA-VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF-----SQDLLPHADTFMFCGEVLPVSVAKALLERF----- 284 (511)
T ss_dssp CHHH-HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC-----STTTCTTCCEEEECSSCCCHHHHHHHHHHC-----
T ss_pred Chhh-hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc-----ccccCCcccEEEEecCCCCHHHHHHHHHHC-----
Confidence 6432 34899999999999999999999999887653221 235688999999999999999999999885
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~G 868 (2280)
+++.++|.||+||+++.++........ ......+++|+|+|+++++|+|+++ ..+|+|+.|||+|+||++++|
T Consensus 285 ~~~~i~~~YG~TE~~~~~~~~~~~~~~-----~~~~~~~~~G~~~~~~~~~i~d~~g--~~~~~g~~GEl~v~g~~v~~G 357 (511)
T 3e7w_A 285 PKAKIFNTYGPTEATVAVTSVEITNDV-----ISRSESLPVGFAKPDMNIFIMDEEG--QPLPEGEKGEIVIAGPSVSRG 357 (511)
T ss_dssp TTCEEEECCCCGGGSSCSEEEEECHHH-----HTTCSSCCCBEECTTCEEEEECTTS--CBCCTTCCEEEEEESTTSCCC
T ss_pred CCcEEEeCcccchheeeeeEEeccccc-----cccCCcCCCcceeCCCEEEEECCCC--CCCCCCCceEEEEecCccChh
Confidence 578899999999998776643211100 0111235689999999999999875 455899999999999999999
Q ss_pred cCCCchhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEe
Q 037878 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948 (2280)
Q Consensus 869 Y~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~ 948 (2280)
|||+|+.|+++|..+ ++.+||||||+|+++||.|+|+||+|||||++|+||+|.|||++|.+||+|.+ |+|++
T Consensus 358 Y~~~~~~t~~~f~~~----~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~---a~vv~ 430 (511)
T 3e7w_A 358 YLGEPELTEKAFFSH----EGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRS---AVVIP 430 (511)
T ss_dssp BTTCHHHHHHHEEES----SSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE---EEEEE
T ss_pred hCCCcccchhhhcCC----CCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcce---EEEEE
Confidence 999999999999642 34568999999999999999999999999999999999999999999999975 88888
Q ss_pred ccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHH
Q 037878 949 VPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECL 1027 (2280)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~ 1027 (2280)
++++..+ +.+.+++ ...++... ..++.+.+++.+.++++.++.|..++.+++||+|+||||||++|+
T Consensus 431 ~~~~~~~----------~~~~a~v--v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~ 498 (511)
T 3e7w_A 431 YQPNGTV----------EYLIAAI--VPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIG 498 (511)
T ss_dssp ECSSSSC----------CEEEEEE--EECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHH
T ss_pred EcCCCCc----------eEEEEEE--EeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHH
Confidence 7654321 2222222 22333222 234566677777766666666666777899999999999999999
Q ss_pred HHhhc
Q 037878 1028 KQFVD 1032 (2280)
Q Consensus 1028 ~~~~~ 1032 (2280)
+.+.+
T Consensus 499 ~~~~~ 503 (511)
T 3e7w_A 499 EEVLV 503 (511)
T ss_dssp HHHHH
T ss_pred hHHhh
Confidence 98754
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=653.98 Aligned_cols=492 Identities=19% Similarity=0.258 Sum_probs=385.2
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++++++ +|+++|+.+.+ ++ +++||+||+++++++|+.|+++ |+++||+|+++++|++++++++|
T Consensus 2 ~tl~~~l~~~a~~--~p~~~a~~~~~-~~---~~~Ty~el~~~~~~~A~~L~~~---Gv~~gd~V~i~~~~~~~~~~~~l 72 (504)
T 1t5h_X 2 QTVNEMLRRAATR--APDHCALAVPA-RG---LRLTHAELRARVEAVAARLHAD---GLRPQQRVAVVAPNSADVVIAIL 72 (504)
T ss_dssp CCHHHHHHHHHHH--CTTSEEEEETT-TT---EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcHHHHHHHHHHh--CCCceEEEEcC-CC---ceeEHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHHH
Confidence 4688899988877 48999997542 12 5899999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEE--ccccchhh-ccCCCCCCCcccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILS--TIGYHSAV-RVGSWPNLPWLHTDSWVKNSKNLLAEN 625 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (2280)
||+++|+++||+++.++.++ +.+++++++++++++ +......+ ... +....+..+++...........
T Consensus 73 A~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 143 (504)
T 1t5h_X 73 ALHRLGAVPALLNPRLKSAE-------LAELIKRGEMTAAVIAVGRQVADAIFQSG--SGARIIFLGDLVRDGEPYSYGP 143 (504)
T ss_dssp HHHHHTCEEEEECTTSCHHH-------HHHHHHHTTCSEEEECC--CHHHHHHHHC--CCCEEEEGGGTEETTEECCCSC
T ss_pred HHHHhCcEEEecCCccChHH-------HHHHHhhcCCcEEEEecchhhhhhhhhcc--ccceeEEecchhhcCcccccCC
Confidence 99999999999999999988 889999999999999 65443322 111 1122222222211100000011
Q ss_pred ccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCC--CCCcEEEEEcCchhhhhHHHHHHHHHHccc
Q 037878 626 VVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS--TSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703 (2280)
Q Consensus 626 ~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~ 703 (2280)
........++|+|||+|||||||+||||++||+++.+.+......+++ .+++++++++|++|++++...++.++..|+
T Consensus 144 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (504)
T 1t5h_X 144 PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDG 223 (504)
T ss_dssp CCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTC
T ss_pred ccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCc
Confidence 111134568999999999999999999999999999998888888888 889999999999999998777899999999
Q ss_pred eEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHh
Q 037878 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT 783 (2280)
Q Consensus 704 ~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~ 783 (2280)
++++.+. .+|..+++.++++++|++.++|+++..+.+...... ...++++||.+++|||++++++.++|.+.+
T Consensus 224 ~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 296 (504)
T 1t5h_X 224 TYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---SSLKLDSLRHVTFAGATMPDAVLETVHQHL 296 (504)
T ss_dssp EEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT---CCCCCTTCCEEEECCTTCCHHHHHHHHHHC
T ss_pred eEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc---ccccCccccEEEEcCCcCCHHHHHHHHHhc
Confidence 9998763 389999999999999999999999999887642211 125689999999999999999999999874
Q ss_pred cCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCC-cccCCCCCeeEEEEc-
Q 037878 784 RPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS-EEIGEPGKEGEVWIS- 861 (2280)
Q Consensus 784 ~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~-~~~~p~G~~GEL~i~- 861 (2280)
++.++|.||+||+++ +.... . ...+++|.|.++++++|+|++++ ...+|.|+.|||+|+
T Consensus 297 ------~~~~~~~YG~TE~~~-~~~~~-~-----------~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~g 357 (504)
T 1t5h_X 297 ------PGEKVNIYGTTEAMN-SLYMR-Q-----------PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357 (504)
T ss_dssp ------CSEEEEEEEETTTEE-EEEEE-S-----------CSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEEC
T ss_pred ------Ccceeeeeccccccc-ccccc-C-----------CCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeC
Confidence 467999999999932 22211 1 12367889999999999997652 245689999999999
Q ss_pred CCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcC
Q 037878 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR 940 (2280)
Q Consensus 862 Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~ 940 (2280)
|+++++||+|+|+.|+++|. +|||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 358 g~~~~~GY~~~~~~t~~~f~--------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 429 (504)
T 1t5h_X 358 SDSAFVGYLNQPQATAEKLQ--------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTE 429 (504)
T ss_dssp CTTSCCCBTTCHHHHHHHEE--------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred CceeeceecCCchhhhhhhc--------CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcce
Confidence 99999999999999999994 3799999999997 99999999999999999999999999999999999975
Q ss_pred CceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-CHHHHHHHHH-HHHHhcCcceeEEEEecCCCccCCCC
Q 037878 941 PGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-DKDVIENIKT-RVVEEHGVTVASVKLIKPRTMSKTTS 1018 (2280)
Q Consensus 941 ~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-~~~l~~~l~~-~l~~~~~~~~~~~~lv~~~~lP~t~s 1018 (2280)
|+|++.+++..+ +.+.+++ ...++... .+++.+.+++ +|+. |++| ..++.+++||+|+|
T Consensus 430 ---a~Vv~~~~~~~g----------~~~~a~v--v~~~~~~~~~~~l~~~~~~~~L~~-~~~P---~~i~~v~~lP~t~~ 490 (504)
T 1t5h_X 430 ---VVVIGLADQRWG----------QSVTACV--VPRLGETLSADALDTFCRSSELAD-FKRP---KRYFILDQLPKNAL 490 (504)
T ss_dssp ---EEEEEEECSSSS----------EEEEEEE--EECTTCCCCHHHHHHHHHTSSCCG-GGSC---SEEEECSCCCBCTT
T ss_pred ---EEEEEeecCCCC----------cEEEEEE--EecCCcCcCHHHHHHHHhhccCcc-cccc---eEEEEhhhCCCCCC
Confidence 899988775432 1222222 23333322 3455566655 4443 4444 44555699999999
Q ss_pred cccchHHHHHHhh
Q 037878 1019 GKIKRFECLKQFV 1031 (2280)
Q Consensus 1019 GKvdR~~L~~~~~ 1031 (2280)
|||||++|++++.
T Consensus 491 GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 491 NKVLRRQLVQQVS 503 (504)
T ss_dssp SCBCHHHHHHHHC
T ss_pred CCEeHHHHHHHhc
Confidence 9999999998763
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-63 Score=674.27 Aligned_cols=518 Identities=19% Similarity=0.231 Sum_probs=396.5
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHH-hcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLL-TSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~-~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
.++.+++++++++ .|+++|+++.+++....+++||+||.++++++|+.|+ ++ |+++||+|+|+++|++|+++++
T Consensus 82 n~~~~~l~~~a~~--~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~---Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 82 NACYNCVDRHALK--TPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSM---GVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp CHHHHHTHHHHTT--CTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTS---CCCTTCEEEECCCSSHHHHHHH
T ss_pred cHHHHHHHHHhcc--CCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEcCCCHHHHHHH
Confidence 4577888887766 4899999987543223478999999999999999998 88 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh---------hc--cCCCCCCC-cccccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA---------VR--VGSWPNLP-WLHTDSWV 615 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~---------~~--~~~~~~~~-~~~~~~~~ 615 (2280)
|||+++|++++|+++.++.++ +.+++++++++++|++...... +. ....+.+. .+..+...
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 229 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNS-------LRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTN 229 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSC
T ss_pred HHHHHcCCEEEeeCCCCCHHH-------HHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCC
Confidence 999999999999999999988 8899999999999997654221 00 00111111 11000000
Q ss_pred -------cc----ccccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHH-HHHHHcCCCCCcEEEE
Q 037878 616 -------KN----SKNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK-LMRKRYKSTSKTVLVS 681 (2280)
Q Consensus 616 -------~~----~~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~-~~~~~~~~~~~d~~l~ 681 (2280)
.. ..+.. ...........++|++||+|||||||+||||+++|++++..+. .....+++.++|++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~ 309 (663)
T 1ry2_A 230 NPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT 309 (663)
T ss_dssp CSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEE
T ss_pred CCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 00 00000 0111122345679999999999999999999999999876654 4556788999999999
Q ss_pred EcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCc
Q 037878 682 WLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSM 761 (2280)
Q Consensus 682 ~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~L 761 (2280)
.+|++|+++....++.+|+.|++++++++.....+|..+++.++++++|++.++|++++.+.+.... .....++++|
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---~~~~~~l~sL 386 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---YIENHSLKSL 386 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT---SSSSCCCTTC
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc---ccccCCcCce
Confidence 9999999998778899999999999987644445899999999999999999999999888643221 1233678999
Q ss_pred cEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEE
Q 037878 762 KFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIV 841 (2280)
Q Consensus 762 r~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Iv 841 (2280)
|.+++|||++++++.+++.+.+ |.+++.++|.||+||++..++.....+. .....+++|+|++|++++|+
T Consensus 387 r~i~~gGe~l~~~~~~~~~~~~---g~~~~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~gs~G~p~~g~~v~i~ 456 (663)
T 1ry2_A 387 RCLGSVGEPIAAEVWEWYSEKI---GKNEIPIVDTYWQTESGSHLVTPLAGGV-------TPMKPGSASFPFFGIDAVVL 456 (663)
T ss_dssp CEEEECSSCCCHHHHHHHHHTT---SCSSSCEEECBCCTTTCSCSEECCTTTC-------CCCCTTCCCEECTTCCEEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHh---CCCCceEEEeECCccccCeeeccCCCCC-------cccCCCccccCcCCCeEEEE
Confidence 9999999999999999998865 2245889999999999876554322010 01234789999999999999
Q ss_pred cCCCCcccCCC-CCeeEEEEcC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEE
Q 037878 842 NPETSEEIGEP-GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLII 917 (2280)
Q Consensus 842 d~~~~~~~~p~-G~~GEL~i~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IK 917 (2280)
|++++..+ +. |+.|||+|+| |++++||||+|+.|.+.|... .+|||||||+|+++ ||+|+|+||+|||||
T Consensus 457 d~~~g~~v-~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~-----~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik 530 (663)
T 1ry2_A 457 DPNTGEEL-NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP-----YPGYYFTGDGAAKDKDGYIWILGRVDDVVN 530 (663)
T ss_dssp CSSSTTCE-ECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS-----STTSEEEEEEEEECTTCCEEECSCTTSCBC
T ss_pred cCCCCCcC-CCCCcceEEEEecCCCchhcccccChHHHHHhhhcC-----CCCEEEcCCEEEEcCCCCEEEEeecCCEEE
Confidence 98444444 45 9999999999 589999999999999988531 24799999999997 999999999999999
Q ss_pred ECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC---C-CH---HHHHHH
Q 037878 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP---V-DK---DVIENI 990 (2280)
Q Consensus 918 i~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~---~-~~---~l~~~l 990 (2280)
++|+||+|.|||++|.+||+|.+ |+|++++++..+ ...+++++. .++.. . ++ ++.+.+
T Consensus 531 ~~G~rI~~~eIE~~l~~~p~V~e---a~Vvg~~~~~~g---------~~~~a~Vv~---~~~~~~~~~~~~~~~~l~~~l 595 (663)
T 1ry2_A 531 VSGHRLSTAEIEAAIIEDPIVAE---CAVVGFNDDLTG---------QAVAAFVVL---KNKSSWSTATDDELQDIKKHL 595 (663)
T ss_dssp SSSCCBCHHHHHHHHHSSTTEEE---EEEECCCCCTTS---------CCCEEEEEE---C------------CCSHHHHH
T ss_pred ECCEEcCHHHHHHHHHhCCCcce---EEEEEEecCCCC---------eEEEEEEEE---cCCCccccccchhHHHHHHHH
Confidence 99999999999999999999875 899998776432 223344433 22211 1 11 345556
Q ss_pred HHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 991 KTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 991 ~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
++.+.+.++.++.|..++.+++||+|+||||+|++|++.+.+
T Consensus 596 ~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 596 VFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp HHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred HHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 666666555555555666779999999999999999887644
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-63 Score=666.72 Aligned_cols=496 Identities=18% Similarity=0.222 Sum_probs=319.7
Q ss_pred CCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 467 ELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 467 ~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
...++.+++++++++. |+++|+.+.+ +++||+||+++++++|+.|+++ |+++||+|+++++|+++++++
T Consensus 28 ~~~tl~~~l~~~a~~~--p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n~~~~~~~ 96 (544)
T 3o83_A 28 IDQPLTRILTVGVQSH--PHSLAIICGE------RQLSYIELDRLSTNLATRLAEK---GLGKGDTALVQLPNVAEFYIV 96 (544)
T ss_dssp CCCCTTHHHHHHHHHC--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEECCCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhC--CCceEEEcCC------CceeHHHHHHHHHHHHHHHHHC---CCCCCCEEEEECCCCHHHHHH
Confidence 3467889999988874 8999998532 6899999999999999999998 999999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccch--------hhccCCCCCCCccc-cccccc-
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHS--------AVRVGSWPNLPWLH-TDSWVK- 616 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~- 616 (2280)
+|||+++|+++||+++.++.++ +.++++++++++++++..... .+.... .....+. ......
T Consensus 97 ~lA~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 168 (544)
T 3o83_A 97 FFALLKAGVVVLNALYSHRQYE-------LNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVN-LSPEIILMLNHQATD 168 (544)
T ss_dssp HHHHHHHTCEEEECCTTCCHHH-------HHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTT-CCCSEEEEETCCTTS
T ss_pred HHHHHHhCcEEecCCCCCCHHH-------HHHHHHhcCeeEEEEccccccccHHHHHHHHhhcc-cCcceEEEecCCccc
Confidence 9999999999999999999888 889999999999999865421 111000 1111100 000000
Q ss_pred ----cccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHH
Q 037878 617 ----NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLI 692 (2280)
Q Consensus 617 ----~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~ 692 (2280)
.................++|+|||+|||||||+||||++||+++.+.+......+++.++|++++++|++|.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 248 (544)
T 3o83_A 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLS 248 (544)
T ss_dssp EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecc
Confidence 0000001111122345689999999999999999999999999999999999999999999999999999999876
Q ss_pred H-HHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCC
Q 037878 693 G-GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPV 771 (2280)
Q Consensus 693 ~-~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l 771 (2280)
. .++.++..|+++++.+. .+|..+++.++++++|++.++|+++..+++...... .++++||.+++|||++
T Consensus 249 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~lr~i~~gG~~l 319 (544)
T 3o83_A 249 SPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-----DQIQSLKLLQVGGASF 319 (544)
T ss_dssp SSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----HHHTTCCEEEEESSCC
T ss_pred hHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----ccCCcceEEEEcCCCC
Confidence 4 68899999999998764 289999999999999999999999999887654332 4578999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCC-CCceEEEEcCCCCcccC
Q 037878 772 RQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQND-PDVDIRIVNPETSEEIG 850 (2280)
Q Consensus 772 ~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~-pg~~v~Ivd~~~~~~~~ 850 (2280)
++++.+++.+.+ ++.++|.||+||+++.++..... .....+++|+|+ ++++++|+|+++ ..+
T Consensus 320 ~~~~~~~~~~~~------~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~G~p~~~~~~~~i~d~~~--~~~ 382 (544)
T 3o83_A 320 PESLARQVPEVL------NCKLQQVFGMAEGLVNYTRLDDS---------DEQIFTTQGRPISSDDEIKIVDEQY--REV 382 (544)
T ss_dssp CHHHHTHHHHHH------CSEEEEEEECTTSCEEECCTTSC---------HHHHHHCCCEESCTTCEEEEECTTS--CBC
T ss_pred CHHHHHHHHHHh------CCcEEeeeccccccceeecCCCc---------hhhccCCCceecCCCcEEEEECCCC--CCC
Confidence 999999999875 56899999999998654432111 012246789996 899999999765 446
Q ss_pred CCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHH
Q 037878 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVE 929 (2280)
Q Consensus 851 p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE 929 (2280)
|+|++|||+|+||+++.||||+|+.|+++|.. ++||||||+|+++ ||.|+|+||+|||||++|+||+|.|||
T Consensus 383 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~-------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE 455 (544)
T 3o83_A 383 PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDE-------DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIE 455 (544)
T ss_dssp CTTCCEEEEEECTTSCSCCTTCHHHHHHHBCT-------TCCEEEEEEEEECTTSCEEEEEEEC----------------
T ss_pred CCCCeeEEEEecCCcchhhcCChhhhhhhCCC-------CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHH
Confidence 89999999999999999999999999999954 4899999999997 999999999999999999999999999
Q ss_pred HHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHH-HHHHhcCcceeEEEEe
Q 037878 930 KTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKT-RVVEEHGVTVASVKLI 1008 (2280)
Q Consensus 930 ~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~~~~~lv 1008 (2280)
++|.+||+|.+ |+|++++++..++ ..+++++.. +......++.+.+++ +|+. +++| ..++
T Consensus 456 ~~l~~~p~V~~---a~vv~~~~~~~g~---------~~~a~vv~~---~~~~~~~~l~~~~~~~~l~~-~~~P---~~i~ 516 (544)
T 3o83_A 456 KLILLHPEVMH---AALVAIVDEQFGE---------KSCAFIVSR---NPELKAVVLRRHLMELGIAQ-YKLP---DQIK 516 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCccE---EEEEeccCCCCCc---------eEEEEEEeC---CCCCCHHHHHHHHHhCCCCc-ccCC---cEEE
Confidence 99999999976 8888887765432 223333321 222233455666666 4543 5544 4455
Q ss_pred cCCCccCCCCcccchHHHHHHhhcC
Q 037878 1009 KPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1009 ~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
.+++||+|+||||||++|++++.+.
T Consensus 517 ~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 517 LIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp -------------------------
T ss_pred EeccCCCCCCCCCcHHHHHHHHhhc
Confidence 5699999999999999998886543
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-62 Score=654.70 Aligned_cols=504 Identities=20% Similarity=0.252 Sum_probs=388.7
Q ss_pred CCHHHHHHhhccc---cccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHH
Q 037878 469 SSLDGYLKHWGTH---RITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVD 545 (2280)
Q Consensus 469 ~tl~~~l~~~a~~---~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~v 545 (2280)
.++.+++++++++ ...|+++|+.+.+.++. .+++||+||+++++++|+.|++.. |+++||+|+++++|++++++
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~-~~~~Ty~el~~~~~~lA~~L~~~~--Gv~~gd~V~i~~~n~~e~~~ 114 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGK-ELMWNFRELSENSQQAANVLSGAC--GLQRGDRVAVVLPRVPEWWL 114 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSC-EEEEEHHHHHHHHHHHHHHHHTTT--CCCTTCEEEEECCSCHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCc-eeEEeHHHHHHHHHHHHHHHHHcc--CCCCCCEEEEEcCCCHHHHH
Confidence 3456788777764 01389999988754332 268999999999999999998752 79999999999999999999
Q ss_pred HHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhcc--CCCCCCCc-ccccccc----ccc
Q 037878 546 AFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV--GSWPNLPW-LHTDSWV----KNS 618 (2280)
Q Consensus 546 a~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~~-~~~~~~~----~~~ 618 (2280)
++|||+++|+++||+++.++.++ +.++++++++++++++......+.. ...+.... +..+... ...
T Consensus 115 ~~lA~~~~Ga~~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (570)
T 3c5e_A 115 VILGCIRAGLIFMPGTIQMKSTD-------ILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNF 187 (570)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHH-------HHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEH
T ss_pred HHHHHHHcCeEEEecCCCCCHHH-------HHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccH
Confidence 99999999999999999999888 8899999999999998765433221 01111111 1111000 000
Q ss_pred cccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHH-HHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHH
Q 037878 619 KNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIH-NVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695 (2280)
Q Consensus 619 ~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i 695 (2280)
.+.. ...........++|++||+|||||||.||||+++|+.+.+ ..... ..+++.++|++++++|++|+++++..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 188 KKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTT
T ss_pred HHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHH
Confidence 0000 0111112345689999999999999999999999994432 34343 667889999999999999999987788
Q ss_pred HHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHH
Q 037878 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTT 775 (2280)
Q Consensus 696 ~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l 775 (2280)
+.++..|+++++.+...+ +|..+++.++++++|++.++|+++..+.+. .....++++||.+++|||++++++
T Consensus 267 ~~~l~~G~~~~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~~~~~~lr~i~~gGe~l~~~~ 338 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKF--DPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------DLSSYKFPHLQNCVTVGESLLPET 338 (570)
T ss_dssp HHHHHHTCEEEEECCSSC--CHHHHHHHHHHSCCCEEEECHHHHHHHHTS------CTTTCCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHhCceEEEecCCCC--CHHHHHHHHHHhCCeEEeccHHHHHHHHhc------cccccccccceEEEEcCCcCCHHH
Confidence 999999999998865444 899999999999999999999999888753 112356889999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCe
Q 037878 776 VKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE 855 (2280)
Q Consensus 776 ~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~ 855 (2280)
.++|.+.+ ++.++|.||+||+++.++..... ....+++|+|+|+++++|+|+++ ..+|.|+.
T Consensus 339 ~~~~~~~~------g~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~~~~~v~i~d~~g--~~~~~G~~ 400 (570)
T 3c5e_A 339 LENWRAQT------GLDIRESYGQTETGLTCMVSKTM----------KIKPGYMGTAASCYDVQIIDDKG--NVLPPGTE 400 (570)
T ss_dssp HHHHHHHH------SCCCEEEEEETTTEEEEECCTTS----------CCCTTCCCEECTTCCEEEECTTS--CBCCTTCC
T ss_pred HHHHHHHh------CCchhhccchhhcccceecCccc----------ccCCCcccccCCCceEEEECCCC--CCCCCCCC
Confidence 99999875 46799999999998765543211 12247899999999999999875 45689999
Q ss_pred eEEEEc-----CCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHH
Q 037878 856 GEVWIS-----SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVE 929 (2280)
Q Consensus 856 GEL~i~-----Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE 929 (2280)
|||+|+ |+++++||||+|+.|+++|. ++||||||+|+++ ||.|+|+||+|||||++|+||+|.|||
T Consensus 401 GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~--------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE 472 (570)
T 3c5e_A 401 GDIGIRVKPIRPIGIFSGYVDNPDKTAANIR--------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVE 472 (570)
T ss_dssp EEEEEECSSBCCTTCCCEETTCHHHHHHTEE--------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHH
T ss_pred CeeEEeccCCCCchhhccccCChhHhhhhhc--------CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHH
Confidence 999999 99999999999999999985 3899999999997 999999999999999999999999999
Q ss_pred HHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC--CCCHHHHHHHHHHHHHhcCcceeEEEE
Q 037878 930 KTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK--PVDKDVIENIKTRVVEEHGVTVASVKL 1007 (2280)
Q Consensus 930 ~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~l 1007 (2280)
++|.+||+|.+ |+|++.+++..+ +.+.++++ ..++. ...+.+.+.+++.+.+.++.++.|..+
T Consensus 473 ~~l~~~p~V~~---a~Vv~~~~~~~g----------~~~~a~vv--~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i 537 (570)
T 3c5e_A 473 NALMEHPAVVE---TAVISSPDPVRG----------EVVKAFVV--LASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKI 537 (570)
T ss_dssp HHHHTSTTEEE---EEEEEEEETTTE----------EEEEEEEE--ECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEE
T ss_pred HHHHhCCCcce---EEEEeeeCCCCC----------eEEEEEEE--ECCcccCcchHHHHHHHHHHHHhhCccccCCcEE
Confidence 99999999975 888887765332 12222222 22221 122334556666666555444444455
Q ss_pred ecCCCccCCCCcccchHHHHHHhhc
Q 037878 1008 IKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1008 v~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+.+++||+|+||||||++|++.+.+
T Consensus 538 ~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 538 EFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred EEeccCCCCCCcCCcHHHHHHHHHh
Confidence 5569999999999999999988643
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-63 Score=663.32 Aligned_cols=501 Identities=17% Similarity=0.205 Sum_probs=308.5
Q ss_pred CCCHHHHHHhhccccccCCceEEEE-EcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTW-INEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~-~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va 546 (2280)
..++.+++++.+++. |+++|++. .+..+. +++||+||+++++++|++|+++ |+++||+|+++++|+++++++
T Consensus 19 ~~tl~~~l~~~a~~~--p~~~a~~a~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~~~~ 91 (550)
T 3rix_A 19 DGTAGEQLHKAMKRY--ALVPGTIAFTDAHIE--VNITYAEYFEMSVRLAEAMKRY---GLNTNHRIVVCSENSLQFFMP 91 (550)
T ss_dssp CSCHHHHHHHHHHHH--HTSTTCEEEEETTTC--CEEEHHHHHHHHHHHHHHHHHH---TCCTTCEEEEECSSCTTTHHH
T ss_pred cCCHHHHHHHHHHhC--CCCceEEEeeecCCC--cEeEHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEcCCcccHHHH
Confidence 468999999988875 67777542 232222 6899999999999999999998 999999999999999999999
Q ss_pred HHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCcc-cccc---------c
Q 037878 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWL-HTDS---------W 614 (2280)
Q Consensus 547 ~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~-~~~~---------~ 614 (2280)
+|||+++|+++||+++.++.++ +.++++++++++++++......+... ..+....+ ..+. +
T Consensus 92 ~lA~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (550)
T 3rix_A 92 VLGALFIGVAVAPANDIYNERE-------LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSM 164 (550)
T ss_dssp HHHHHHHTCEEEECCTTCCHHH-------HHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBH
T ss_pred HHHHHHcCCEEeecCCcCCHHH-------HHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccH
Confidence 9999999999999999999988 88999999999999987654322110 00111100 0000 0
Q ss_pred ccccccccc-----ccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH---cCCCCCcEEEEEcCch
Q 037878 615 VKNSKNLLA-----ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR---YKSTSKTVLVSWLPQY 686 (2280)
Q Consensus 615 ~~~~~~~~~-----~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~ 686 (2280)
......... ....+.....++|+|||+|||||||.||||++||+++++.+...... +++.+++++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 000000000 00011112245789999999999999999999999999888776554 4678899999999999
Q ss_pred hhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEE
Q 037878 687 HDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMV 766 (2280)
Q Consensus 687 h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~ 766 (2280)
|+++++ .++.++..|+++++.+. .++..+++.++++++|++.++|+++..+.+.... ...++++||.+++
T Consensus 245 ~~~g~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~l~~lr~i~~ 314 (550)
T 3rix_A 245 HGFGMF-TTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI-----DKYDLSNLHEIAS 314 (550)
T ss_dssp SHHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG-----GGSCCTTCCEEEE
T ss_pred HHHHHH-HHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc-----cccCcccccEEEE
Confidence 999984 57788999999998753 3899999999999999999999999988764322 2357899999999
Q ss_pred ecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCC
Q 037878 767 AAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846 (2280)
Q Consensus 767 gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~ 846 (2280)
|||++++++.++|.+.++ ...++|.||+||+++.++..... ....+++|+|+|+++++|+|++++
T Consensus 315 gG~~l~~~~~~~~~~~~~-----~~~v~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~~~~~~~~~i~d~~~~ 379 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFH-----LPGIRQGYGLTETTSAILITPEG----------DDKPGAVGKVVPFFEAKVVDLDTG 379 (550)
T ss_dssp CSSCCCHHHHHHHHHHTT-----CSCCEEEEECGGGSSEEEECCTT----------CCCTTEEEEECTTCEEEEECTTTC
T ss_pred ecCCCCHHHHHHHHHHcC-----CCccccccCcCccccceecCCCC----------CCCCCCcccccCCcEEEEEeCCCC
Confidence 999999999999998752 33488999999999876654321 123477899999999999998765
Q ss_pred cccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeech
Q 037878 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYS 925 (2280)
Q Consensus 847 ~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~ 925 (2280)
. .+|+|+.|||+|+||++++||||+|+.|++.|.. +|||||||+|+++ ||.++|+||+|||||++|+||+|
T Consensus 380 ~-~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p 451 (550)
T 3rix_A 380 K-TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDK-------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451 (550)
T ss_dssp C-BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT-------TSCEEEEEEEEECTTCCEEEC----------------
T ss_pred c-CCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCC-------CCCeecCcEEEEeCCceEEEEecchheeEECCEEECH
Confidence 4 4579999999999999999999999999998853 4899999999997 99999999999999999999999
Q ss_pred HHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEE
Q 037878 926 ADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASV 1005 (2280)
Q Consensus 926 ~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 1005 (2280)
.|||++|.+||+|.+ |+|++++++..+ +.+.++++.+.. .....++++++++++++..++++.
T Consensus 452 ~eIE~~l~~~p~V~~---a~vv~~~~~~~g----------~~~~a~vv~~~~-~~~~~~~l~~~~~~~l~~~~~~~~--- 514 (550)
T 3rix_A 452 AELESILLQHPNIFD---AGVAGLPDDDAG----------ELPAAVVVLEHG-KTMTEKEIVDYVASQVTTAKKLRG--- 514 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCcce---EEEEEeecCCCC----------ceEEEEEEecCC-CCCCHHHHHHHHHHhcccccccCC---
Confidence 999999999999976 888888776433 222233322211 112335677888888876544332
Q ss_pred EEecCCCccCCCCcccchHHHHHHhhc
Q 037878 1006 KLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1006 ~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
.++.+++||+|+||||||++|++++.+
T Consensus 515 ~i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 515 GVVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp ---------------------------
T ss_pred ceEEEeecCCCCCcceeHHHHHHHHHh
Confidence 244459999999999999999888654
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-62 Score=657.52 Aligned_cols=506 Identities=21% Similarity=0.278 Sum_probs=357.4
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+++++++++. |+++|+.+.+.++ .+++||+||+++++++|+.|+++ |+++||+|+++++|++++++++|
T Consensus 18 ~~l~~~l~~~a~~~--p~~~a~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 18 LNLWDFLERAAALF--GRKEVVSRLHTGE--VHRTTYAEVYQRARRLMGGLRAL---GVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCTHHHHHHHHHHS--TTCEEEEECTTSC--EEEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHhC--CCceEEEEecCCC--CceecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcHHHHHHHH
Confidence 57889999888764 8999998653322 36899999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhcc--CCCCCCC-cccccccc----cccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV--GSWPNLP-WLHTDSWV----KNSKNL 621 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~-~~~~~~~~----~~~~~~ 621 (2280)
||+++|+++||+++.++.++ +.++++++++++++++......+.. ...+... .+..+... ....+.
T Consensus 91 A~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPKE-------IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEA 163 (541)
T ss_dssp HHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHH
T ss_pred HHHhcCcEEEecCcccCHHH-------HHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHH
Confidence 99999999999999999888 8899999999999998765432211 0111111 11111000 000000
Q ss_pred ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHH--HHHcCCCCCcEEEEEcCchhhhhHHHHHHHHH
Q 037878 622 LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM--RKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699 (2280)
Q Consensus 622 ~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L 699 (2280)
.... .......++|++||+|||||||.||||++||+++++..... ...++++++|++++++|++|++++ ..++.++
T Consensus 164 ~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l 241 (541)
T 1v25_A 164 LGEE-ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAAT 241 (541)
T ss_dssp CCSC-CCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHH
T ss_pred hhcc-CCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHH
Confidence 0000 11134567899999999999999999999999998776552 345678899999999999999997 4577889
Q ss_pred HccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHH
Q 037878 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779 (2280)
Q Consensus 700 ~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~ 779 (2280)
+.|+++++.++ . .+|..+++.++++++|++.++|+++..+.+...... .++++||.+++|||++++++.++|
T Consensus 242 ~~G~~~v~~~~-~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~l~~lr~i~~gG~~l~~~~~~~~ 313 (541)
T 1v25_A 242 LVGAKQVLPGP-R--LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-----HRLKTLRRLVVGGSAAPRSLIARF 313 (541)
T ss_dssp HHTCEEEECTT-C--CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----CCCSSCCEEEECSSCCCHHHHHHH
T ss_pred hcCceEEeeCC-C--CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----CcchhccEEEECCCCCCHHHHHHH
Confidence 99999998653 2 389999999999999999999999999887655432 468899999999999999999999
Q ss_pred HHHhcCCCCCCcccccccCccccccceecccCCCCceeec-CCCceeeccccCCCCCceEEEEcCCCCcccCCC-CCeeE
Q 037878 780 VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILD-WQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP-GKEGE 857 (2280)
Q Consensus 780 ~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~-~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~-G~~GE 857 (2280)
+.+ +++++|.||+||++.+++............ .......+++|+|+|+++++|+|+++. .+.+. |+.||
T Consensus 314 -~~~------g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~-~~~~~~~~~GE 385 (541)
T 1v25_A 314 -ERM------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGR-PVPKDGKALGE 385 (541)
T ss_dssp -HHT------TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSC-BCCSSSCCCEE
T ss_pred -HHh------CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCC-CCCCCCCcceE
Confidence 543 568999999999997766542210000000 000012467999999999999998753 33223 36899
Q ss_pred EEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhcc
Q 037878 858 VWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESST 936 (2280)
Q Consensus 858 L~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p 936 (2280)
|+|+||+++.||||+|+.|+++|.. +|||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.+||
T Consensus 386 l~v~g~~v~~GY~~~p~~t~~~f~~-------~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p 458 (541)
T 1v25_A 386 VQLKGPWITGGYYGNEEATRSALTP-------DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHP 458 (541)
T ss_dssp EEEESTTSBSSCBTCHHHHHTTBCT-------TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----
T ss_pred EEEeCcchhccccCChhhhhhhccC-------CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCC
Confidence 9999999999999999999999863 4899999999997 9999999999999999999999999999999999
Q ss_pred CCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHH-HHHHhcCcceeEEEEecCCCccC
Q 037878 937 EHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKT-RVVEEHGVTVASVKLIKPRTMSK 1015 (2280)
Q Consensus 937 ~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~~~~~lv~~~~lP~ 1015 (2280)
+|.+ |+|++++++..+ +.+.++++. .......+++.+++++ +|+. +++|. .++.+++||+
T Consensus 459 ~V~~---a~Vv~~~~~~~~----------~~~~a~vv~--~~~~~~~~~l~~~~~~~~L~~-~~~P~---~i~~v~~lP~ 519 (541)
T 1v25_A 459 KVKE---AAVVAIPHPKWQ----------ERPLAVVVP--RGEKPTPEELNEHLLKAGFAK-WQLPD---AYVFAEEIPR 519 (541)
T ss_dssp --------CEEEEECSSSS----------EEEEECC---------------------CCCT-TTSCS---BC--------
T ss_pred CceE---EEEEEecCCCcC----------ceEEEEEEE--CCCCCCHHHHHHHHHhccCcc-ccCCc---EEEEeCCCCC
Confidence 9976 888888775432 122222221 1111222455666665 4543 55554 3444589999
Q ss_pred CCCcccchHHHHHHhhc
Q 037878 1016 TTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1016 t~sGKvdR~~L~~~~~~ 1032 (2280)
|+||||||++|++++.+
T Consensus 520 t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 520 TSAGKFLKRALREQYKN 536 (541)
T ss_dssp ------CCTTHHHHSTT
T ss_pred CCccCeeHHHHHHHHHH
Confidence 99999999999998754
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-62 Score=655.28 Aligned_cols=504 Identities=16% Similarity=0.231 Sum_probs=387.8
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++++++. |+++|+.+.+ +++||+||+++++++|++|++. |+++||+|+++++|++++++++
T Consensus 3 ~~~l~~~l~~~a~~~--p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~---g~~~gd~V~i~~~n~~~~~~~~ 71 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQ--ADFPVYDCLG------ERRTYGQLKRDSDSIAAFIDSL---ALLAKSPVLVFGAQTYDMLATF 71 (521)
T ss_dssp CCCHHHHHHHHHHHS--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHT---CCCTTCCEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCcceecCC------CeecHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCCHHHHHHH
Confidence 357889999988874 8999987532 5899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccccccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVV 627 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (2280)
|||+++|+++||+++..+.++ +.++++++++++++++.+..... .....+......... .......
T Consensus 72 lA~~~~G~v~vpl~~~~~~~~-------l~~il~~~~~~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~ 137 (521)
T 3l8c_A 72 VALTKSGHAYIPVDVHSAPER-------ILAIIEIAKPSLIIAIEEFPLTI-----EGISLVSLSEIESAK--LAEMPYE 137 (521)
T ss_dssp HHHHHTTCCEEEEETTSCHHH-------HHHHHHHSCCSEEEESSCCCSCC-----TTSEEEEHHHHHHHH--HHTCCCC
T ss_pred HHHHHhCCEEEecCccccHHH-------HHHHHHhCCCCEEEecCcccccc-----ccCcccchhhhhhcc--cccCCcc
Confidence 999999999999999999988 88999999999999986543221 111111111111000 0011111
Q ss_pred ccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH--cCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceE
Q 037878 628 CFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR--YKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTA 705 (2280)
Q Consensus 628 ~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~ 705 (2280)
......++|++||+|||||||.||||++||+++.+.+.+.... ++..++++++++.|++|+.++ ..++.++..|+++
T Consensus 138 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~ 216 (521)
T 3l8c_A 138 RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTL 216 (521)
T ss_dssp CSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEE
T ss_pred cCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEE
Confidence 2334678999999999999999999999999999888777665 677899999999999999997 4678889999999
Q ss_pred EEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcC
Q 037878 706 ILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785 (2280)
Q Consensus 706 vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~ 785 (2280)
++.+. ....++..+++.+.++++|++..+|+++..+...... ...+++++|.+++|||++++++.+++.+.+
T Consensus 217 ~~~~~-~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-- 288 (521)
T 3l8c_A 217 FALPK-ELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF-----CQAKMPALTHFYFDGEELTVSTARKLFERF-- 288 (521)
T ss_dssp EECCG-GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC-----STTTCTTCCEEEECSSCCCHHHHHHHHHHC--
T ss_pred EEcCH-HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc-----ccccCccceEEEEecccCCHHHHHHHHHHC--
Confidence 88754 3345899999999999999999999998877543221 235688999999999999999999999875
Q ss_pred CCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCc
Q 037878 786 FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSA 865 (2280)
Q Consensus 786 ~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v 865 (2280)
+++.++|.||+||+++.++......... .....+++|+|+|+++++|+|+++ ..+|.|+.|||+|+||++
T Consensus 289 ---~~~~i~~~YG~TE~~~~~~~~~~~~~~~-----~~~~~~~vG~p~~~~~~~i~d~~g--~~~~~g~~GEl~v~g~~v 358 (521)
T 3l8c_A 289 ---PSAKIINAYGPTEATVALSAIEITREMV-----DNYTRLPIGYPKPDSPTYIIDEDG--KELSSGEQGEIIVTGPAV 358 (521)
T ss_dssp ---TTCEEEEEECCGGGSSCSEEEEECHHHH-----HHCSSCEEEEECTTSCEEEECTTS--CBCCTTCCEEEEEESTTS
T ss_pred ---CCceEEeCcCccHHhhhhceeecccccc-----cCCCccccccccCCCEEEEECCCc--CCCCCCCceEEEeccccc
Confidence 5788999999999988766432111000 011235689999999999999875 345799999999999999
Q ss_pred ccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCcee
Q 037878 866 GIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCC 944 (2280)
Q Consensus 866 ~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~a 944 (2280)
+.||||+|+.|+++|.. .++++||||||+|+++ ||.++|+||+||+||++|+||+|.|||++|.+||+|.+ |
T Consensus 359 ~~GY~~~~~~t~~~f~~----~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~---a 431 (521)
T 3l8c_A 359 SKGYLNNPEKTAEAFFT----FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVAS---A 431 (521)
T ss_dssp CSCBTTCHHHHHHHEEE----ETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEE---E
T ss_pred ChhhcCCchHhhccCcC----CCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcce---E
Confidence 99999999999999953 1356899999999997 99999999999999999999999999999999999965 7
Q ss_pred EEEeccccccccccccccCCCCceEEEEEEEecCCCCC----CHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcc
Q 037878 945 AVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV----DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020 (2280)
Q Consensus 945 aVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~----~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGK 1020 (2280)
+|++.+++... +...+++++ ..++... ..++.+.+++.+.++++.++.|..++.+++||+|+|||
T Consensus 432 ~vv~~~~~~~~--------~~~~~a~vv---~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK 500 (521)
T 3l8c_A 432 VAVPRYNKEHK--------VQNLLAYIV---VKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGK 500 (521)
T ss_dssp EEECCCSSSCC-----------CEEEEE---ECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSS
T ss_pred EEEEeecCCCC--------ceEEEEEEE---ecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcC
Confidence 78876543211 112233333 2333211 12345667777776666666666677789999999999
Q ss_pred cchHHHHHHhhcC
Q 037878 1021 IKRFECLKQFVDG 1033 (2280)
Q Consensus 1021 vdR~~L~~~~~~~ 1033 (2280)
|||++|++++.+.
T Consensus 501 idr~~L~~~~~~~ 513 (521)
T 3l8c_A 501 IDIKTLINEVNNR 513 (521)
T ss_dssp BCHHHHHHHTC--
T ss_pred ccHHHHhhhhhcC
Confidence 9999999987543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-62 Score=651.57 Aligned_cols=501 Identities=18% Similarity=0.211 Sum_probs=388.8
Q ss_pred CCCCCCHHH-HHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhH
Q 037878 465 FPELSSLDG-YLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDF 543 (2280)
Q Consensus 465 ~~~~~tl~~-~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~ 543 (2280)
.|...++.+ ++...+++ + +++|+++.+ ++ +++||+||+++++++|+.|++. |+++||+|+++++|++++
T Consensus 21 ~p~~~~l~~~~l~~~~~~--~-~~~A~~~~~-~~---~~~Ty~el~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n~~e~ 90 (548)
T 2d1s_A 21 EEGSAGTQLRKYMERYAK--L-GAIAFTNAV-TG---VDYSYAEYLEKSCCLGKALQNY---GLVVDGRIALCSENCEEF 90 (548)
T ss_dssp CSSCHHHHHHHHHHHHHH--H-TCEEEEETT-TC---CEEEHHHHHHHHHHHHHHHHHH---TCCTTCEEEEECSSCTTT
T ss_pred CCCcCcHHHHHHHhhhcc--c-CCceEEEcC-CC---CEeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEeCCchhH
Confidence 344457888 77777665 5 889987532 12 5899999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCC-CCCcccccccc-----
Q 037878 544 VDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWP-NLPWLHTDSWV----- 615 (2280)
Q Consensus 544 ~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~-~~~~~~~~~~~----- 615 (2280)
++++|||+++|+++||+++.++.++ +.++++++++++++++......+... ..+ ....+..+...
T Consensus 91 ~~~~la~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (548)
T 2d1s_A 91 FIPVIAGLFIGVGVAPTNEIYTLRE-------LVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGY 163 (548)
T ss_dssp HHHHHHHHHHTCEEEEECTTSCHHH-------HHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTB
T ss_pred HHHHHHHHhhCCEEeccCCCCCHHH-------HHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccccccc
Confidence 9999999999999999999999888 88999999999999987654322110 001 01111111100
Q ss_pred ccccccccc--cc-cccCCC------CCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH---cCCCCCcEEEEEc
Q 037878 616 KNSKNLLAE--NV-VCFTES------QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR---YKSTSKTVLVSWL 683 (2280)
Q Consensus 616 ~~~~~~~~~--~~-~~~~~~------~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~---~~~~~~d~~l~~~ 683 (2280)
....+.... .. ...... .++|++||+|||||||.||||++||+++.+.+...... ++++++|++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVV 243 (548)
T ss_dssp CBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECS
T ss_pred ccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEec
Confidence 000000000 00 011112 23899999999999999999999999999988877666 6788999999999
Q ss_pred CchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccE
Q 037878 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763 (2280)
Q Consensus 684 pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~ 763 (2280)
|++|++++...++.++ .|+++++.+. .+|..+++.++++++|++.++|+++..+.+.... ...++++||.
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~l~~lr~ 313 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSELL-----NKYDLSNLVE 313 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG-----GGSCCTTCCE
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc-----ccccccceeE
Confidence 9999999876677888 9999988753 3899999999999999999999999988753221 2256889999
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcC
Q 037878 764 LMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNP 843 (2280)
Q Consensus 764 l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~ 843 (2280)
+++|||++++++.++|.+.+ +++.++|.||+||++.+++..... ....+++|+|+|+++++|+|+
T Consensus 314 i~~gG~~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~~G~~~~~~~~~i~d~ 378 (548)
T 2d1s_A 314 IASGGAPLSKEVGEAVARRF-----NLPGVRQGYGLTETTSAIIITPEG----------DDKPGASGKVVPLFKAKVIDL 378 (548)
T ss_dssp EEECSSCCCHHHHHHHHHHT-----TCSCCEEEEECGGGSSEEEECCTT----------CCCTTCCBEECTTCEEEEECT
T ss_pred EEEcCccCCHHHHHHHHHHc-----CCCceeeccccccccceeeecCcc----------cCCCCCCCccCCCceEEEEeC
Confidence 99999999999999999885 467899999999998776653211 123478899999999999996
Q ss_pred CCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCee
Q 037878 844 ETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRN 922 (2280)
Q Consensus 844 ~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~r 922 (2280)
+++. .+++|+.|||+|+||++++||||+|+.|+++|.. ++||||||+|+++ ||.++|+||+|||||++|+|
T Consensus 379 ~~~~-~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~-------~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~ 450 (548)
T 2d1s_A 379 DTKK-SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE-------EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQ 450 (548)
T ss_dssp TTCC-BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT-------TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCC
T ss_pred CcCc-cCCCCCCeEEEECCHHHhhhhcCChHHhhhcccC-------CcEEEccCEEEEcCCCeEEEeccccceEEECCEE
Confidence 5554 4579999999999999999999999999999853 4899999999997 99999999999999999999
Q ss_pred echHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhcCcc
Q 037878 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP-VDKDVIENIKTRVVEEHGVT 1001 (2280)
Q Consensus 923 I~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~ 1001 (2280)
|+|.|||++|.+||+|.+ |+|++.+++..+ +.+.++++ ..++.. ..++++++++++|+. ++.|
T Consensus 451 v~p~eIE~~l~~~p~V~~---a~V~~~~~~~~g----------~~~~a~vv--~~~~~~~~~~~l~~~~~~~l~~-~~~p 514 (548)
T 2d1s_A 451 VPPAELESVLLQHPSIFD---AGVAGVPDPVAG----------ELPGAVVV--LESGKNMTEKEVMDYVASQVSN-AKRL 514 (548)
T ss_dssp BCHHHHHHHHHTSTTEEE---EEEEEEEETTTE----------EEEEEEEE--ECTTCCCCHHHHHHHHHTTSCG-GGSC
T ss_pred ECHHHHHHHHHhCCCccE---EEEEEEEcCCCC----------eeeEEEEE--EcCCCCCCHHHHHHHHHHhccc-cccc
Confidence 999999999999999975 889988775432 12222222 233322 335666666666654 3334
Q ss_pred eeEEEEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 1002 VASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1002 ~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
.. .++.+++||+|+||||||++|++++.+.
T Consensus 515 ~~--~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 515 RG--GVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp TT--CEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred cc--cEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 31 2344599999999999999999988654
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-62 Score=649.34 Aligned_cols=488 Identities=20% Similarity=0.259 Sum_probs=311.1
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
..++.+++++++++. ||++|+.+.+ +++||+||+++++++|+.|+++ |+++||+|+++++|++++++++
T Consensus 5 ~~tl~~~l~~~a~~~--pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---Gv~~gd~V~i~~~~~~~~~~~~ 73 (509)
T 3ivr_A 5 DFTLADVYRRNAALF--PDRTAFMVDG------VRLTHRDYLARAERLASGLLRD---GVHTGDRVAILSQNCSEMIELI 73 (509)
T ss_dssp CCCHHHHHHHHHHHS--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHC--CCceEEEECC------cEEcHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCCHHHHHHH
Confidence 458999999998874 8999998632 6899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhcc--CCCCCCCc-cccccc---ccccccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV--GSWPNLPW-LHTDSW---VKNSKNL 621 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~~-~~~~~~---~~~~~~~ 621 (2280)
|||+++|+++||+++.+|.++ +.++++++++++++++......... ...+.... +...+. .......
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNADE-------IAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDL 146 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHHH-------HHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGT
T ss_pred HHHHHhCCEEEecCCCCCHHH-------HHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhc
Confidence 999999999999999999998 8899999999999998765443111 01111111 101000 0000000
Q ss_pred ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHc
Q 037878 622 LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVG 701 (2280)
Q Consensus 622 ~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~ 701 (2280)
............++|++||+|||||||.||||++||+++.+.+.+....++++++|++++++|++|++++...+...+.+
T Consensus 147 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~ 226 (509)
T 3ivr_A 147 ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAG 226 (509)
T ss_dssp CCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhC
Confidence 11111223456789999999999999999999999999999999999999999999999999999999986544445555
Q ss_pred cceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHH
Q 037878 702 GSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781 (2280)
Q Consensus 702 G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~ 781 (2280)
|++ ++.. . .+|..+++.++++++|++..+|+++..+++.. ...+++++|.++.+|++ ++.+++.+
T Consensus 227 g~~-~~~~--~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-------~~~~l~~lr~~~~~g~~---~~~~~~~~ 291 (509)
T 3ivr_A 227 GAS-VIAA--K--FDPAQAARDIEAHKVTVMAEFAPMLGNILDQA-------APAQLASLRAVTGLDTP---ETIERFEA 291 (509)
T ss_dssp CEE-EECS--S--CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC-------CGGGGTTCCEEEEECCH---HHHHHHHH
T ss_pred CcE-EEec--c--cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc-------cccchhhhheecccCCh---HHHHHHHH
Confidence 554 4443 2 38999999999999999999999999887653 12567899999999998 78888888
Q ss_pred HhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEc
Q 037878 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861 (2280)
Q Consensus 782 ~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~ 861 (2280)
.+ +++.++|.||+||++++++....... ...+|+|+++++++|+|+++ ..+|+|++|||+|+
T Consensus 292 ~~-----~~~~~~~~YG~TE~~~~~~~~~~~~~-----------~~~~G~p~~~~~~~i~d~~~--~~~~~g~~GEl~v~ 353 (509)
T 3ivr_A 292 TC-----PNATFWATFGQSETSGLSTFAPYRDR-----------PKSAGRPLFWRTVAVVDAED--RPLPPGEVGEIVLR 353 (509)
T ss_dssp HC-----TTCEEEEEEEEGGGTEEEEEEEGGGS-----------TTSCCEECTTCEEEEECTTS--CBCCTTCCEEEEEE
T ss_pred hc-----CCCeEEcccCccccccccccCccccC-----------CCcccccCCCcEEEEECCCC--CCCCCCCceEEEEe
Confidence 75 57899999999999987665432111 13489999999999999875 45689999999999
Q ss_pred CCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecC--CCeEEECCeeechHHHHHHHHhccCC
Q 037878 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRI--KDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 862 Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~--dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
||++++||||+|+.|+++|.+ |||||||+|+++ ||.++|+||+ ||+||++|+||+|.|||++|.+||+|
T Consensus 354 g~~~~~gY~~~~~~t~~~f~~--------g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V 425 (509)
T 3ivr_A 354 GPTVFKGYWNNAAATQHAFRN--------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAI 425 (509)
T ss_dssp STTSCCEETTCHHHHHHHTGG--------GSEEEEEEEEECTTSCEEEEEEC----------------------------
T ss_pred cCCccccccCCHHHhHHHhhc--------CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCc
Confidence 999999999999999999963 899999999997 9999999999 99999999999999999999999999
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCC
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTT 1017 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~ 1017 (2280)
.+ |+|++.+++..++ ...++++. .++. ...+++.+.++++|+. +++| ..++.+++||+|+
T Consensus 426 ~~---a~vv~~~~~~~~~---------~~~a~v~~---~~~~~~~~~~l~~~l~~~L~~-~~~P---~~i~~v~~lP~t~ 486 (509)
T 3ivr_A 426 AD---AVVIGVPDPQWSE---------AIKAVCVC---KPGESIAADALAEFVASLIAR-YKKP---KHVVFVEALPKDA 486 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ee---EEEEeccccccCc---------EEEEEEEe---CCCCCCCHHHHHHHHHhhCcc-cCCC---cEEEEecCCCCCC
Confidence 76 8888887754321 12222222 2222 2234667777777765 4444 4455569999999
Q ss_pred CcccchHHHHHHhhcC
Q 037878 1018 SGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1018 sGKvdR~~L~~~~~~~ 1033 (2280)
||||||++|++++.+.
T Consensus 487 ~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 487 KGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------
T ss_pred CCCccHHHHHHHHhhc
Confidence 9999999998886543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-62 Score=694.88 Aligned_cols=516 Identities=22% Similarity=0.295 Sum_probs=333.0
Q ss_pred CCCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 037878 460 LPGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVP 539 (2280)
Q Consensus 460 ~~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~ 539 (2280)
++...+|...++.+++++++++. |+++|+++.+. + +++||+||+++++++|+.|+++ |+++||+|+++++|
T Consensus 52 ~~~~~~p~~~tl~~~l~~~a~~~--pd~~Al~~~~~-~---~~~TY~eL~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n 122 (979)
T 3tsy_A 52 LPDIYIPNHLSLHDYIFQNISEF--ATKPCLINGPT-G---HVYTYSDVHVISRQIAANFHKL---GVNQNDVVMLLLPN 122 (979)
T ss_dssp SCCCCCCTTSCHHHHHTTTGGGT--TTSEEEEETTT-C---CEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHhC--CCCeEEEECCC-C---cEEEHHHHHHHHHHHHHHHHHc---CCCCcCEEEEEeCC
Confidence 45556777889999999998874 89999975422 2 5899999999999999999998 99999999999999
Q ss_pred CHhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC-CCCCCcccc-------
Q 037878 540 GLDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS-WPNLPWLHT------- 611 (2280)
Q Consensus 540 s~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~------- 611 (2280)
++++++++|||+++|+++||+++.+|.++ +.++++++++++++++......+.... ......+..
T Consensus 123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (979)
T 3tsy_A 123 CPEFVLSFLAASFRGATATAANPFFTPAE-------IAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVP 195 (979)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECTTSCHHH-------HHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSC
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHH-------HHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCccccc
Confidence 99999999999999999999999999998 889999999999999876543221100 000111111
Q ss_pred --------ccccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH----HcCCCCCcEE
Q 037878 612 --------DSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK----RYKSTSKTVL 679 (2280)
Q Consensus 612 --------~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~----~~~~~~~d~~ 679 (2280)
.++..... ............++|++||+|||||||+||||+++|+++++.+..... .+++.+++++
T Consensus 196 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~ 273 (979)
T 3tsy_A 196 IPEGCLRFTELTQSTT--EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVI 273 (979)
T ss_dssp CCTTEEEGGGTSSCCS--GGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEE
T ss_pred CCcccccHHHHhhccc--cccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEE
Confidence 11100000 000112233467899999999999999999999999999988776543 3567889999
Q ss_pred EEEcCchhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCC
Q 037878 680 VSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759 (2280)
Q Consensus 680 l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~ 759 (2280)
++++|++|++++...++.++..|+++++.++ .++..+++.++++++|++..+|+++..+.+..... ..+++
T Consensus 274 l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~l~ 344 (979)
T 3tsy_A 274 LCVLPMFHIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE-----KYDLS 344 (979)
T ss_dssp EECSCSSSHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG-----TSCCT
T ss_pred EEECchHHHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc-----CCCcc
Confidence 9999999999998888999999999998763 38899999999999999999999998887654332 25689
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccC-CCCceeecCCCceeeccccCCCCCceE
Q 037878 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYG-QGKPIILDWQGRVCCGYVDQNDPDVDI 838 (2280)
Q Consensus 760 ~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~-~~~~~~~~~~g~~~~g~vG~p~pg~~v 838 (2280)
+||.+++|||++++++.++|.+.+ ++++++|.||+||++.+++.... ...+ .....+++|+|+|++++
T Consensus 345 ~lr~~~~gg~~l~~~~~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~~~~~~~~~------~~~~~~~~G~p~~~~~~ 413 (979)
T 3tsy_A 345 SIRVVKSGAAPLGKELEDAVNAKF-----PNAKLGQGYGMTEAGPVLAMSLGFAKEP------FPVKSGACGTVVRNAEM 413 (979)
T ss_dssp TCCEEEESSCCCCSSHHHHHHHHC-----TTCEEEECEECGGGCSEEEECGGGSSSC------CCCCTTCCCEECSSCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHC-----CCCeEEeeechhhhhHHHHhCCCCCCCc------cccCCCCcCcccCCcEE
Confidence 999999999999999999999875 57889999999999987664321 1111 12234788999999999
Q ss_pred EEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEE
Q 037878 839 RIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLII 917 (2280)
Q Consensus 839 ~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IK 917 (2280)
+|+|++++. .+|+|++|||+|+||++++||||+|+.|+++|.. ++||||||+|+++ ||.|+|+||+|||||
T Consensus 414 ~i~d~~~~~-~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik 485 (979)
T 3tsy_A 414 KIVDPDTGD-SLSRNQPGEICIRGHQIMKGYLNNPAATAETIDK-------DGWLHTGDIGLIDDDDELFIVDRLKELIK 485 (979)
T ss_dssp EEECTTSCC-BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT-------TSCEEEEEEEEECTTSCEEEEEESCC---
T ss_pred EEEeCCCCC-CCCCCCccEEEEECCCccccccCChhhhhhhccC-------CCcEEcCCEEEEcCCceEEEecCCCCEEE
Confidence 999987654 4579999999999999999999999999999853 4899999999997 999999999999999
Q ss_pred ECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHH
Q 037878 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGK-PVDKDVIENIKTRVVE 996 (2280)
Q Consensus 918 i~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-~~~~~l~~~l~~~l~~ 996 (2280)
++|+||+|.|||++|.+||+|.+ |+|++++++..++ ..+++++. .++. ...+++.+.++++|+.
T Consensus 486 ~~G~~v~~~eIE~~l~~~p~V~~---~~Vv~~~~~~~g~---------~~~a~vv~---~~~~~~~~~~l~~~l~~~l~~ 550 (979)
T 3tsy_A 486 YKGFQVAPAELEALLIGHPDITD---VAVVAMKEEAAGE---------VPVAFVVK---SKDSELSEDDVKQFVSKQVVF 550 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCEEECHHHHHHHHHhCCCcce---EEEEEecccCCCc---------EEEEEEEE---CCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999999976 8888877654321 22333332 1221 2234566777776654
Q ss_pred hcCcceeEEEEecCCCccCCCCcccchHHHHHHhhcCCCCCCCC
Q 037878 997 EHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPE 1040 (2280)
Q Consensus 997 ~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~~~~~lp~ 1040 (2280)
+++| ..++.+++||+|+||||||++|++++.++....+..
T Consensus 551 -~~~p---~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~ 590 (979)
T 3tsy_A 551 -YKRI---NKVFFTESIPKAPSGKILRKDLRAKLANGLGSGMAS 590 (979)
T ss_dssp ------------------------------------------CC
T ss_pred -ccCC---eEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCcccc
Confidence 4444 445566999999999999999999988765544433
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=642.93 Aligned_cols=477 Identities=21% Similarity=0.268 Sum_probs=357.9
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.+.|++++++. .+|++|+.+.+ +++||+||+++++++|+.|. .||+|+++++|++++++++|
T Consensus 22 ~tl~~~l~~~a~~~-p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~--------~~~~V~i~~~~~~~~~~~~l 86 (505)
T 3nyq_A 22 SSLFPALSPAPTGA-PADRPALRFGE------RSLTYAELAAAAGATAGRIG--------GAGRVAVWATPAMETGVAVV 86 (505)
T ss_dssp --CCTTTSSCCCSG-GGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC-----------CEEEECCSSHHHHHHHH
T ss_pred chhHHHHHHHHHhC-CCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc--------CCCEEEEEcCCCHHHHHHHH
Confidence 34455666666664 24599998632 68999999999999998773 37899999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVC 628 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (2280)
||+++|+++||+|+.+|.++ +.++++++++++++++.+...... ......+..+. .......
T Consensus 87 a~~~~Ga~~vpl~~~~~~~~-------l~~il~~~~~~~vi~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~ 148 (505)
T 3nyq_A 87 AALLAGVAAVPLNPKSGDKE-------LAHILSDSAPSLVLAPPDAELPPA---LGALERVDVDV--------RARGAVP 148 (505)
T ss_dssp HHHHHTCCEEEECTTCCHHH-------HHHHHHHHCCSEEEECTTCCCCGG---GTTSEEEECCT--------TCCCCCC
T ss_pred HHHHhCCEEEEcCCCCCHHH-------HHHHHHHCCCCEEEECCccccchh---hcccccccccc--------ccccCCC
Confidence 99999999999999999998 889999999999999754211000 01111111100 0011112
Q ss_pred cCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEe
Q 037878 629 FTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708 (2280)
Q Consensus 629 ~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~ 708 (2280)
.....++|++||+|||||||.||||+++|+++.+.+......+++.++|++++++|++|..+++..++.++..|+++++.
T Consensus 149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 33467899999999999999999999999999999999999999999999999999999999888899999999999987
Q ss_pred CccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCC
Q 037878 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGL 788 (2280)
Q Consensus 709 ~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~ 788 (2280)
+. .++..+++.+ ++++|++.++|+++..+.+....... ...+++++|.+++|||++++++.+++.+.+
T Consensus 229 ~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~----- 296 (505)
T 3nyq_A 229 GR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--LAKALAGARLLVSGSAALPVHDHERIAAAT----- 296 (505)
T ss_dssp SS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--HHHHHHHCSEEEECSSCCCHHHHHHHHHHH-----
T ss_pred CC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--hhcccccceEEEECCCCCCHHHHHHHHHhc-----
Confidence 53 3788889988 88999999999999998875443221 113577899999999999999999999875
Q ss_pred CCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccC--CCCCeeEEEEcCCCcc
Q 037878 789 SQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIG--EPGKEGEVWISSPSAG 866 (2280)
Q Consensus 789 ~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~--p~G~~GEL~i~Gp~v~ 866 (2280)
+++++|.||+||+++.++..... ....+++|+|+||++++|+|+++. ++. +.|++|||+|+||+++
T Consensus 297 -~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~~~~~~~i~d~~g~-~~~~~~~g~~GEl~v~g~~v~ 364 (505)
T 3nyq_A 297 -GRRVIERYGMTETLMNTSVRADG----------EPRAGTVGVPLPGVELRLVEEDGT-PIAALDGESVGEIQVRGPNLF 364 (505)
T ss_dssp -SCCCEEEEEETTTEEEEECCTTS----------CCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSC
T ss_pred -CCeeecccchhhcccccccCCCC----------CCCCCCcccCCCCCEEEEECCCCC-CcccCCCCceEEEEEecCchh
Confidence 56899999999998766543211 123467899999999999998753 321 2389999999999999
Q ss_pred cccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecC-CCeEEECCeeechHHHHHHHHhccCCcCCcee
Q 037878 867 IGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRI-KDLIIVAGRNVYSADVEKTVESSTEHIRPGCC 944 (2280)
Q Consensus 867 ~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~-dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~a 944 (2280)
+||||+|+.|+++|.. ++||||||+|+++ ||.|+|+||+ |||||++|+||+|.|||++|.+||+|.+ |
T Consensus 365 ~GY~~~~~~t~~~f~~-------~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~---a 434 (505)
T 3nyq_A 365 TEYLNRPDATAAAFTE-------DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVRE---A 434 (505)
T ss_dssp CEETTCHHHHHHTBCT-------TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEE---E
T ss_pred hhhCCChhHhhhhhcC-------CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccE---E
Confidence 9999999999999964 4899999999997 9999999998 5999999999999999999999999975 8
Q ss_pred EEEeccccccccccccccCCCCceEEEEEEEecC-C-CCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccc
Q 037878 945 AVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRD-G-KPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIK 1022 (2280)
Q Consensus 945 aVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~-~-~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvd 1022 (2280)
+|++.+++..++ ..++++ ...+ + ....+++.++++++|+. +++| ..++.+++||+|+|||||
T Consensus 435 ~Vv~~~~~~~g~---------~l~a~v---v~~~~~~~~~~~~l~~~l~~~L~~-~~~P---~~i~~v~~lP~t~~GKi~ 498 (505)
T 3nyq_A 435 AVTGEPDPDLGE---------RIVAWI---VPADPAAPPALGTLADHVAARLAP-HKRP---RVVRYLDAVPRNDMGKIM 498 (505)
T ss_dssp EEEEEEETTTEE---------EEEEEE---EESSTTSCCCHHHHHHHHHHHTCG-GGSC---SEEEECSCCCC-------
T ss_pred EEEeeECCCCCc---------EEEEEE---EECCCCCCCCHHHHHHHHHhhCCC-CcCc---cEEEEECCCCCCCCcCee
Confidence 898887754321 122222 2232 2 22225666666666654 4444 445556999999999999
Q ss_pred hHHHHH
Q 037878 1023 RFECLK 1028 (2280)
Q Consensus 1023 R~~L~~ 1028 (2280)
|++|++
T Consensus 499 r~~L~~ 504 (505)
T 3nyq_A 499 KRALNR 504 (505)
T ss_dssp ------
T ss_pred HHhhcc
Confidence 998765
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=637.42 Aligned_cols=491 Identities=22% Similarity=0.258 Sum_probs=368.4
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.++.++++++++ . |+++|+.+. + +++||+||+++++++|+.|+++ |+++||+|+++++|++++++++|
T Consensus 24 ~~~~~~l~~~~~-~--p~~~A~~~~---~---~~~Ty~el~~~~~~lA~~L~~~---Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 24 NFAAYLFRLNET-R--AGKTAYIDD---T---GSTTYGELEERARRFASALRTL---GVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CHHHHHHHHTGG-G--TTSEEEECS---S---CEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSTHHHHHHH
T ss_pred eHHHHHHHhhhc-c--CCceEEEeC---C---CCccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcHHHHHHHH
Confidence 347888888887 4 899998743 1 5799999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCC-C-cccccccc------ccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNL-P-WLHTDSWV------KNS 618 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~-~-~~~~~~~~------~~~ 618 (2280)
||+++|+++||+++.++.++ +.++++++++++++++......+... ..+.. . .+..+... ...
T Consensus 92 A~~~~G~~~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPAD-------YVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLF 164 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHH-------HHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBH
T ss_pred HHHHcCceEEecCcccCHHH-------HHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccch
Confidence 99999999999999999888 88999999999999987654322110 00111 0 00000000 000
Q ss_pred cccc--cccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHH-HHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHH
Q 037878 619 KNLL--AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGL-IHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695 (2280)
Q Consensus 619 ~~~~--~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i 695 (2280)
.+.. ...........++|++||+|||||||.||||++||+++ .+........+++.++|++++++|++|++++...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 244 (529)
T 2v7b_A 165 EELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244 (529)
T ss_dssp HHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHT
T ss_pred hhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHH
Confidence 0000 01111223456899999999999999999999999998 56555545557788999999999999999987778
Q ss_pred HHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHH
Q 037878 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTT 775 (2280)
Q Consensus 696 ~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l 775 (2280)
+.++..|+++++.++ . .++..+++.++++++|++.++|+++..+++..... .....++|.+++|||++++++
T Consensus 245 ~~~l~~G~~~v~~~~-~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 245 TFPLSVGATAILMAE-R--PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLP-----ARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHTCEEECCCS-C--CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCC-----CGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHhcCcEEEEecC-C--CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccc-----cccCCceEEEEEcCCCCCHHH
Confidence 889999999987643 2 38999999999999999999999988876432111 111237999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCe
Q 037878 776 VKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE 855 (2280)
Q Consensus 776 ~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~ 855 (2280)
.++|.+.+ +++++|.||+||++.+++..... ....+++|+|+|+++++|+|+++ ..+|+|++
T Consensus 317 ~~~~~~~~------g~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~~G~p~~~~~~~i~d~~g--~~~~~g~~ 378 (529)
T 2v7b_A 317 GERFTAHF------GCEILDGIGSTEMLHIFLSNRAG----------AVEYGTTGRPVPGYEIELRDEAG--HAVPDGEV 378 (529)
T ss_dssp HHHHHHHH------SCCEEEEEECTTTSSEEEECCTT----------CCCTTSCCEECTTCEEEEECTTS--CBCCTTSC
T ss_pred HHHHHHHh------CCceeeeEchhhcCceeeccccC----------CCccCCcccCCCCCEEEEECCCC--CCCCCCCc
Confidence 99999875 46799999999997654433211 12246789999999999999765 45589999
Q ss_pred eEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHh
Q 037878 856 GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVES 934 (2280)
Q Consensus 856 GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~ 934 (2280)
|||+|+||+++.||||+|+.|+++|. ++||||||+|+++ ||.|+|+||+|||||++|+||+|.|||++|.+
T Consensus 379 GEl~v~g~~~~~gY~~~~~~t~~~f~--------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 379 GDLYIKGPSAAVMYWNNREKSRATFL--------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp EEEEEECTTCCCCBTTCHHHHHHHEE--------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTT
T ss_pred cEEEEecCCcccccCCChHHHHHhhh--------cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999999996 3899999999997 99999999999999999999999999999999
Q ss_pred ccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCcc
Q 037878 935 STEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS 1014 (2280)
Q Consensus 935 ~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP 1014 (2280)
||+|.+ |+|++. ++..+ ....++ +...++....+.+.+.+++.+.+.++.++.|..++.+++||
T Consensus 451 ~p~V~~---~~vv~~-~~~~~----------~~~~a~--vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 514 (529)
T 2v7b_A 451 HDAVLE---AAVVGV-DHGGL----------VKTRAF--VVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLP 514 (529)
T ss_dssp STTEEE---EEEEEE-EETTE----------EEEEEE--EEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCC
T ss_pred CCCcce---EEEEEe-cCCCc----------eEEEEE--EEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCC
Confidence 999975 888876 33111 112222 22233322122234456666655554444444555568999
Q ss_pred CCCCcccchHHHHH
Q 037878 1015 KTTSGKIKRFECLK 1028 (2280)
Q Consensus 1015 ~t~sGKvdR~~L~~ 1028 (2280)
+|+|||+||++|++
T Consensus 515 ~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 515 KTATGKIQRFKLRE 528 (529)
T ss_dssp BCTTSCBCHHHHHC
T ss_pred CCCccchhHHhHhh
Confidence 99999999999864
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=615.49 Aligned_cols=298 Identities=20% Similarity=0.241 Sum_probs=270.8
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|+++|.+||||+|++|+|++++++++++++++|+ +|++|||++|||+++|+++ |+.+|+||||||||++ +|+
T Consensus 63 ErIPeR~vHAKG~gA~G~F~vt~d~s~~t~A~~f~~~Gk~tPv~vRFStv~G~~gs~Dt~rD~RGfAvKFyt~-eGn--- 138 (688)
T 3ej6_A 63 ERIPERVVHARGAGAHGIFTSYGDWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADTARDVHGFATRFYTD-EGN--- 138 (688)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSBCTTTCCCSTTBSTTCEEEEEEEEECSSSCTTCCTTSSSCCEEEEEEEET-TEE---
T ss_pred cCCcccccccCceEEEEEEEECCCchHhhhhHhhcCCCceeEEEEEecCCCCCCCCcccCCCCccEEEEEEcC-CCC---
Confidence 78999999999999999999999999999999996 6999999999999999865 9999999999999997 554
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhcc--------------Cc---chhhhhhhcccCCCccccceeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKR--------------VP---HIRDAVWKSLRLSDSYAEMHYYSN 1849 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~p~s~~~~~y~s~ 1849 (2280)
|||||||+||||+||+++|++|+++++++|++.+++ +| |....+++.+++|.||++|+|||+
T Consensus 139 -~DlVgnN~PVFFirDp~kFpdfiha~k~~P~t~~~~~~~~~~~~wdF~s~~PEs~h~~~~l~sdrg~P~Syr~m~g~g~ 217 (688)
T 3ej6_A 139 -FDIVGNNIPVFFIQDAIRFPDLIHSVKPSPDNEVPQAATAHDSAWDFFSSQPSALHTLFWAMSGNGIPRSYRHMDGFGI 217 (688)
T ss_dssp -EEEEEESSSSCSCSSGGGHHHHHHHHSCBTTTTBSTTCCCSHHHHHHHHHSGGGHHHHHHHHSGGGSBSCSTTCCEECC
T ss_pred -cccccccCCccccCCHHHHHHHHHhhccCCCcCCCChhhhhhHHHHHHHhChhhHHHHHHHhccCCCCCCcccCCcccc
Confidence 999999999999999999999999999988665543 34 334445677899999999999999
Q ss_pred eeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEE
Q 037878 1850 ICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929 (2280)
Q Consensus 1850 ~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ 1929 (2280)
|+|+|+|++|+.+||||||+|.+|+++++.+|+.+... +++|||++||+++|++|++++|+|+||
T Consensus 218 htf~~vn~~G~~~~VKfh~~p~~G~~~l~~~EA~~~~g---------------~dpD~l~~DL~~~I~~G~~p~w~l~vQ 282 (688)
T 3ej6_A 218 HTFRLVTEDGKSKLVKWHWKTKQGKAALVWEEAQVLAG---------------KNADFHRQDLWDAIESGNAPSWELAVQ 282 (688)
T ss_dssp SCEEEECTTSCEEEEEEEEEESSCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred cceEEEeCCCCEEEEEEEEEECCCCCCCCHHHHHHhhC---------------CCccHHHHHHHHHHhcCCCceEEEEEE
Confidence 99999999999999999999999999999888765422 246799999999999999999999999
Q ss_pred EeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchh
Q 037878 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRS 2007 (2280)
Q Consensus 1930 ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~ 2007 (2280)
+++++|.+.++|+++|+||+|||+++|+++||+|+||+|++| ++|||++|+|+|+++||+||+ |||||+|.
T Consensus 283 v~~~~d~~~~~f~~~D~Tk~WPe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~lvpGI~~S~-------DplLq~R~ 355 (688)
T 3ej6_A 283 LIDEDKAQAYGFDLLDPTKFLPEEFAPLQVLGEMTLNRNPMNYFAETEQISFQPGHIVRGVDFTE-------DPLLQGRL 355 (688)
T ss_dssp EECGGGSSCSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCC-------CHHHHHHH
T ss_pred EechhhhhhcCCCCCcCCeecCCccCcceEEEEEEEcCCccchhhhhhhcccCccccCCCcCCCC-------ChHhhhhh
Confidence 999999999999999999999999999999999999999998 899999999999999999999 99999999
Q ss_pred hHHHhhhHhhc-CCCCchhHHHhhhcccccccCCCCCc
Q 037878 2008 LIYEICQHLRN-GEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2008 ~~Y~~s~~~R~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
++|.+||++|+ |.+ ++|++|| .|.||+
T Consensus 356 fsY~dtqr~Rl~G~N--------~~qlPvN--~p~~~~ 383 (688)
T 3ej6_A 356 YSYLDTQLNRHRGPN--------FEQLPIN--RPVSGV 383 (688)
T ss_dssp HHHHHHHHHHHSSSC--------GGGSTTT--CCSSCC
T ss_pred hhhHHHHHhhccCCC--------hhhCCCC--CCCCCc
Confidence 99999999998 888 4666655 455543
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=618.36 Aligned_cols=298 Identities=20% Similarity=0.287 Sum_probs=271.4
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+||||||||++ +|
T Consensus 120 ErIPER~vHAKG~gA~G~F~vt~d~s~~t~A~~F~~~Gk~tPv~vRFStv~G~~gs~Dt~rD~RGfAvKFyt~-eG---- 194 (753)
T 3ttv_A 120 ERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTE-EG---- 194 (753)
T ss_dssp CCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSCTTCCEEEEEEEECSSSCTTSCTTSSSCCEEEEEEEET-TE----
T ss_pred cCCCccccCCCcceEEEEEEECCchhHHHhhhhhcCCCceeEEEEEecCCCCCCCCCccCCCCCcEEEEEEcC-CC----
Confidence 78999999999999999999999999999999996 6999999999999999865 9999999999999998 45
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhcc--------------Cc---chhhhhhhcccCCCccccceeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKR--------------VP---HIRDAVWKSLRLSDSYAEMHYYSN 1849 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~p~s~~~~~y~s~ 1849 (2280)
+|||||||+||||+||+++|++|+++++++|++.+++ +| |....+++.+++|.||++|+|||+
T Consensus 195 n~DlVgnN~PVFFirDp~kFpdfiha~k~~P~t~~~~~~~~~~~~wdF~s~~PEs~h~~~~l~sdrg~P~Syr~m~g~g~ 274 (753)
T 3ttv_A 195 IFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGI 274 (753)
T ss_dssp EEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTCCCTTCCCSHHHHHHHHHCGGGHHHHHHHHSGGGSBSCGGGSCEECC
T ss_pred CcccccccCCccccCCHHHHHHHHHHhhcCCccCCCCcccchHHHHHHHHhCHHHHHHHHHHhccCCCCCCcccCCcccc
Confidence 4999999999999999999999999999988766553 33 344445566789999999999999
Q ss_pred eeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEE
Q 037878 1850 ICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929 (2280)
Q Consensus 1850 ~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ 1929 (2280)
|+|+|+|++|+.+||||||+|.+|+++++.+|+.+... +++|||++||+++|++|++++|+|+||
T Consensus 275 htf~~vn~~G~~~~VKfh~~p~~G~~~l~~~EA~~~~g---------------~dpD~l~~DL~~~I~~G~~p~w~l~vQ 339 (753)
T 3ttv_A 275 HTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTG---------------RDPDFHRRELWEAIEAGDFPEYELGFQ 339 (753)
T ss_dssp SCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred cceEEEcCCCCEEEEEEEEEECCCCCCCCHHHHHHhhC---------------CCchHHHHHHHHHHhcCCCCeEEEEEE
Confidence 99999999999999999999999999999988776432 246799999999999999999999999
Q ss_pred EeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchh
Q 037878 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRS 2007 (2280)
Q Consensus 1930 ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~ 2007 (2280)
+++++|.+.++|+++|+||+|||+++|+++||+|+||+|++| ++|||++|+|+|+++||+||+ |||||+|.
T Consensus 340 v~~~~d~~~~~f~~~D~TK~WPe~~~Pl~~VG~l~Lnrnp~n~fae~Eq~aF~P~~lvpGI~~S~-------DplLq~R~ 412 (753)
T 3ttv_A 340 LIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTN-------DPLLQGRL 412 (753)
T ss_dssp EEEGGGTTCSSSCTTCTTSCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCC-------CHHHHHHH
T ss_pred eechhhhhcCCCCCccCCccCCCcCccceeeeEEEecCCCcchhhhhhcceeccccccCCcCCCC-------CcHhhhhh
Confidence 999999999999999999999999999999999999999998 899999999999999999999 99999999
Q ss_pred hHHHhhhHhhc-CCCCchhHHHhhhcccccccCCCCCc
Q 037878 2008 LIYEICQHLRN-GEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2008 ~~Y~~s~~~R~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
++|.+||++|+ |.+ ++|++|| .|.||+
T Consensus 413 fsY~dtqr~RlgG~N--------~~qlPvN--~p~~~~ 440 (753)
T 3ttv_A 413 YSYTDTQISRLGGPN--------FHEIPIN--RPTCPY 440 (753)
T ss_dssp HHHHHHHHHHHTSTT--------GGGSGGG--CCSSCC
T ss_pred hhhHHHHHHhccCCC--------cccCCCC--CCCCcc
Confidence 99999999999 777 4665555 555654
|
| >1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=596.45 Aligned_cols=298 Identities=19% Similarity=0.312 Sum_probs=270.5
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCcc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSSL 1787 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~~ 1787 (2280)
+++++|.+||||+|++|+|++++++++++++++|++||+|||++|||+++|+++ |+.+|+|||||||+++ +| +
T Consensus 53 eripeR~vHAKG~ga~G~F~vt~di~~~t~A~~F~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG----n 127 (503)
T 1gwe_A 53 MNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTE-EG----N 127 (503)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSTTCEEEEEEEEECSSSCTTSCTTSSCCCEEEEEEEET-TE----E
T ss_pred CCCCCcccCCCcceEEEEEEECCchHHhhhhhhccCCCeeeEEEEeccCCCCCCCCcccCCcCceEEEEecC-CC----c
Confidence 688999999999999999999999999999999977999999999999999855 9999999999999997 44 4
Q ss_pred eeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEEE
Q 037878 1788 LDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRLF 1854 (2280)
Q Consensus 1788 ~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~~ 1854 (2280)
|||||||+||||++|+++|++|+++++++|++.++ .+| +....+.+.+++|.||++|+|||+|+|+|
T Consensus 128 ~DlVgnN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~ 207 (503)
T 1gwe_A 128 YDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLW 207 (503)
T ss_dssp EEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCCBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEE
T ss_pred eeEeecCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhChhhhhHHHHhhccCCCCCCcccccccccCceEE
Confidence 99999999999999999999999999998865443 344 44444567779999999999999999999
Q ss_pred EEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCC
Q 037878 1855 RFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIP 1934 (2280)
Q Consensus 1855 ~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~ 1934 (2280)
+|++|+.+||||||+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||+++++
T Consensus 208 vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~DL~~aI~~G~~p~w~l~VQl~~~~ 272 (503)
T 1gwe_A 208 VNAQGEKHWVKYHFISQQGVHNLSNDEATKIAG---------------ENADFHRQDLFESIAKGDHPKWDLYIQAIPYE 272 (503)
T ss_dssp ECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEEEEETT
T ss_pred EcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CCccHHHHHHHHHHHcCCCCeEEEEEEeeCHH
Confidence 999999999999999999999999888776421 24679999999999999999999999999999
Q ss_pred CccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHHh
Q 037878 1935 QDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEI 2012 (2280)
Q Consensus 1935 d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~ 2012 (2280)
|.+..+|+++|+||+|||+++|+++||+|+||+|+++ ++|||++|+|+|+++||+||+ |||||+|+++|.+
T Consensus 273 d~~~~~~~~~D~Tk~WPe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~-------DplLq~R~faY~d 345 (503)
T 1gwe_A 273 EGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSP-------DRMLLGRAFAYHD 345 (503)
T ss_dssp HHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCS-------CHHHHHHHHHHHH
T ss_pred HHhcCCCCCCcCceeCCcccCCceEEEEEEecCCCccccccccccccccccccCCcCCCC-------ChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 899999999999999999999 9999999999999
Q ss_pred hhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2013 CQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2013 s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
|+++|+|.+ ++|.+|| .|-||+
T Consensus 346 s~r~Rlg~N--------~~qlPvN--~P~~~~ 367 (503)
T 1gwe_A 346 AQLYRVGAH--------VNQLPVN--RPKNAV 367 (503)
T ss_dssp HHHHHTCTT--------GGGSGGG--CCSSCC
T ss_pred HHHHhccCC--------cccCCcC--CCCCcc
Confidence 999999998 5666555 555554
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-60 Score=626.68 Aligned_cols=476 Identities=20% Similarity=0.229 Sum_probs=356.9
Q ss_pred CHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHH
Q 037878 470 SLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFG 549 (2280)
Q Consensus 470 tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA 549 (2280)
++.+++++++++. |+++|+.+.+ +++||+||+++++++|+.|+++ +||+|+++++|++++++++||
T Consensus 2 tl~~~l~~~a~~~--pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~------~gd~V~i~~~n~~e~~~~~lA 67 (501)
T 3ipl_A 2 SLDFWLYKQAQQN--GHHIAITDGQ------ESYTYQNLYCEASLLAKRLKAY------QQSRVGLYIDNSIQSIILIHA 67 (501)
T ss_dssp -CCCHHHHHHHHH--TTSEEEECSS------CEEEHHHHHHHHHHHHHHHHTT------CCSEEEEECCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHhc--CCceEEEeCC------cEEEHHHHHHHHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHH
Confidence 4556788888774 8999997532 5899999999999999999754 899999999999999999999
Q ss_pred HHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-CCCCCCcccc----cc-----------
Q 037878 550 CMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-SWPNLPWLHT----DS----------- 613 (2280)
Q Consensus 550 ~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-~~~~~~~~~~----~~----------- 613 (2280)
|+++|+++||+++.++.++ +.++++++++++++++.......... .......... ..
T Consensus 68 ~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 68 CWLANIEIAMINTRLTPNE-------MTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp HHHTTCEEEECCTTSCHHH-------HHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred HHHcCCEEEecCccCCHHH-------HHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence 9999999999999999988 88999999999999986544322100 0000000000 00
Q ss_pred -ccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHH
Q 037878 614 -WVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLI 692 (2280)
Q Consensus 614 -~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~ 692 (2280)
....................++|++||+|||||||.||||++||+++.+.+......+++.+++++++++|++|++++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 0000000000011122345789999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCC
Q 037878 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVR 772 (2280)
Q Consensus 693 ~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~ 772 (2280)
.++.++..|+++++.++ .+|..+++.++++++|++.++|+++..+.+..... ..+||.+++|||+++
T Consensus 221 -~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------~~~lr~i~~gG~~l~ 287 (501)
T 3ipl_A 221 -VLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE--------PYNLQKILLGGAKLS 287 (501)
T ss_dssp -HHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS--------CTTCCEEEECSSCCC
T ss_pred -HHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC--------cCcccEEEEeCCCCC
Confidence 48889999999998763 38999999999999999999999999887653221 227999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCC
Q 037878 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852 (2280)
Q Consensus 773 ~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~ 852 (2280)
+++.+++.+. +++++|.||+||++..++....... ....+++|+|+++++++|+|++ .
T Consensus 288 ~~~~~~~~~~-------~~~~~~~YG~TE~~~~~~~~~~~~~--------~~~~~~~G~p~~~~~~~i~d~~-------~ 345 (501)
T 3ipl_A 288 ATMIETALQY-------NLPIYNSFGMTETCSQFLTATPEML--------HARPDTVGMPSANVDVKIKNPN-------K 345 (501)
T ss_dssp HHHHHHHHHT-------TCCEEEEEEEGGGTEEEEEECHHHH--------HHCTTCCBEECTTCEEEEESCC-------S
T ss_pred HHHHHHHHHh-------CCCEeccccccccccceeecCcccc--------ccCCCCCCCCCCCcEEEEecCC-------C
Confidence 9999998863 5679999999999875543221100 1123678999999999999975 4
Q ss_pred CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 853 G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
|+.|||+|+|+++++||+++|+.|++ |. +|||||||+|+++ ||.++|+||+|||||++|+||+|.|||++
T Consensus 346 ~~~GEl~v~g~~~~~gY~~~~~~t~~-~~--------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~ 416 (501)
T 3ipl_A 346 EGHGELMIKGANVMNGYLYPTDLTGT-FE--------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETV 416 (501)
T ss_dssp SCCEEEEEESTTSCSCCSBSTTCCCS-EE--------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHH
T ss_pred CCccEEEEeccchhhhhCcChhhcch-hc--------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHH
Confidence 66899999999999999999999887 53 4899999999997 99999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCC
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPR 1011 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~ 1011 (2280)
|.+||+|.+ |+|++.+++..++ .+.++++ .. .....+++.+.++++|+. +++| ..++.++
T Consensus 417 l~~~p~V~~---~~vv~~~~~~~g~----------~~~a~v~--~~-~~~~~~~l~~~l~~~L~~-~~~P---~~i~~v~ 476 (501)
T 3ipl_A 417 AKQFPGISD---AVCVGHPDDTWGQ----------VPKLYFV--SE-SDISKAQLIAYLSKHLAK-YKVP---KHFEKVD 476 (501)
T ss_dssp HTTSTTEEE---EEEEEEEETTTEE----------EEEEEEE--ES-SCCCHHHHHHHHHHHSCG-GGSC---SEEEECS
T ss_pred HHhCCCccE---EEEEEEecccCCc----------eEEEEEE--eC-CCCCHHHHHHHHHhhCcc-ccCC---CEEEEec
Confidence 999999975 8888887754321 1222222 22 223335666667666654 4444 4455669
Q ss_pred CccCCCCcccchHHHHHHh
Q 037878 1012 TMSKTTSGKIKRFECLKQF 1030 (2280)
Q Consensus 1012 ~lP~t~sGKvdR~~L~~~~ 1030 (2280)
+||+|+||||||++|++..
T Consensus 477 ~lP~t~~GKi~R~~l~~~~ 495 (501)
T 3ipl_A 477 TLPYTSTGKLQRNKLYREG 495 (501)
T ss_dssp SCC----------------
T ss_pred ccCCCCCCCEeHHHHhhcc
Confidence 9999999999999987764
|
| >1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori} SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-61 Score=594.18 Aligned_cols=298 Identities=20% Similarity=0.308 Sum_probs=270.3
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +|++|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 48 eripeR~vHAKG~ga~G~F~vt~di~~~t~A~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG---- 122 (505)
T 1qwl_A 48 ERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTE-EG---- 122 (505)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTSCSSSSSCCEEEEEEEET-TE----
T ss_pred CCCCCccccCCcceeEEEEEECCCchHhhhchhccCCCceeeEEEEeccCCCCCCCCcccCCcCceEEEEecC-CC----
Confidence 68899999999999999999999999999999996 5899999999999999865 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++++++|++.++ .+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 123 n~DlVgnN~PVFfirD~~kFpd~iha~k~~p~t~~~d~~~~wdf~s~~PEs~h~~~~l~sdrg~P~syr~m~g~g~htf~ 202 (505)
T 1qwl_A 123 NWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFS 202 (505)
T ss_dssp EEEEEEESSSCCSCSSGGGHHHHHHHHSCCTTTCSCCHHHHHHHHHHCGGGHHHHHHHHSGGGSBSSGGGSCEECCSCEE
T ss_pred ceeEeecCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhChhHHHHHHHHhccCCCCCCcccccccccCcee
Confidence 499999999999999999999999999998865433 344 4444566777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||++++
T Consensus 203 ~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~DL~~aI~~G~~p~w~l~VQl~~~ 267 (505)
T 1qwl_A 203 LINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRK---------------HDPDSNQRDLFDAIARGDYPKWKLSIQVMPE 267 (505)
T ss_dssp EECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHT---------------TCTTHHHHHHHHHHHTTCCCEEEEEEEEEEG
T ss_pred EEcCCCCEEEEEEEEEeCCCcCCCCHHHHHHhcC---------------CCccHHHHHHHHHHHcCCCceEEEEEEeech
Confidence 9999999999999999999999999888776532 2467999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|....+|+++|+||+|||+++|+++||+|+||+|+++ +++||++|+|||+++||+||+ |||||+|+++|.
T Consensus 268 ~d~~~~~~~~~D~Tk~WPe~~~P~i~VG~L~Lnrnp~n~fae~EqlaF~P~~~vpGI~pS~-------DplLq~R~fsY~ 340 (505)
T 1qwl_A 268 EDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSP-------DRMLQGRLFSYG 340 (505)
T ss_dssp GGTTTCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCC-------CHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcCCeeCCccCCCceEEEEEEECCCcccchhhhhhhhcCccccCCCcccCC-------ChhhhhHHhHHH
Confidence 99999999999999999999999999999999999888 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+|+++|+|.+ ++|.+|| .|-||+
T Consensus 341 ds~r~Rlg~N--------~~qlPvN--~P~~~~ 363 (505)
T 1qwl_A 341 DTHRYRLGVN--------YPQIPVN--KPRCPF 363 (505)
T ss_dssp HHHHHHHCTT--------GGGSGGG--SCSSCC
T ss_pred HHHHHhccCC--------cccCCCC--CCCCcc
Confidence 9999999998 4665554 555554
|
| >1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A {Saccharomyces cerevisiae} SCOP: e.5.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-61 Score=595.14 Aligned_cols=297 Identities=17% Similarity=0.248 Sum_probs=269.1
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 48 eripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG---- 122 (488)
T 1a4e_A 48 ENIPQRNPHAHGSGAFGYFEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGFATKFYTE-EG---- 122 (488)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTCCSSSSSCCEEEEEEEET-TE----
T ss_pred CCCCccccCCCceEEEEEEEECCCchHhhhchhccCCCceeeEEEEeecCCCCCCCCCccCCcCceEEEEecC-CC----
Confidence 68899999999999999999999999999999996 5999999999999999855 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------c--Cc---chhhhhhhcccCCCccccceeeeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------R--VP---HIRDAVWKSLRLSDSYAEMHYYSNIC 1851 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~--~~---~~~~~~~~~~~~p~s~~~~~y~s~~~ 1851 (2280)
+|||||||+||||++|+++|++|+++.+++|++.++ . +| +....+.+.+++|.||++|+|||+|+
T Consensus 123 n~DlV~nN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~ht 202 (488)
T 1a4e_A 123 NLDWVYNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDADMFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHT 202 (488)
T ss_dssp EEEEEEESSSSCSCSCTTHHHHHHHHHSCCTTTCSCCHHHHHHHHTSGGGGGGHHHHHHHHSGGGSBSCGGGCCEECCSC
T ss_pred ccceeeecCCccccCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhccCChHHhhHHHHhhccCCCCCCccccccccccc
Confidence 499999999999999999999999999998865443 3 55 44444667779999999999999999
Q ss_pred EEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEe
Q 037878 1852 RLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIR 1931 (2280)
Q Consensus 1852 ~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~ 1931 (2280)
|+|+|++|+.+||||||+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||++
T Consensus 203 f~~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~dL~~~I~~g~~p~w~l~vQl~ 267 (488)
T 1a4e_A 203 YKWSNKNGDWHYVQVHIKTDQGIKNLTIEEATKIAG---------------SNPDYCQQDLFEAIQNGNYPSWTVYIQTM 267 (488)
T ss_dssp EEEECTTSCEEEEEEEEEESSCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred eEEEcCCCCEEEEEEEEEECCCCCCCCHHHHHHhcC---------------CChhHHHHHHHHHHHcCCCCeEEEEEEee
Confidence 999999999999999999999999999888776432 24679999999999999989999999999
Q ss_pred eCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhH
Q 037878 1932 PIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLI 2009 (2280)
Q Consensus 1932 ~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~ 2009 (2280)
+++|.+..+|+++|+||+|||+++|+++||+|+||+|+++ ++|||++|+|+|+++||+||+ |||||+|+++
T Consensus 268 ~~~d~~~~~f~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~-------D~lLq~R~fa 340 (488)
T 1a4e_A 268 TERDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPSTTVPYQEASA-------DPVLQARLFS 340 (488)
T ss_dssp CHHHHHTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEEECS-------CHHHHHHHHH
T ss_pred cHHHHhcCCCCCCCCCCcCCcccCCceEEEEEEecCCCcchhhhhhhHhcCcccccCCcCCCC-------ChHHHHHHHH
Confidence 9999999999999999999999999999999999999988 899999999999999999999 9999999999
Q ss_pred HHhhhHhhcCCCCchhHHHhhhcccccccCCCCC
Q 037878 2010 YEICQHLRNGEPLPESWRIFLEQSDVKVDLSGCP 2043 (2280)
Q Consensus 2010 Y~~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2280)
|.+|+++|+|.+ ++|.+|| .|-||
T Consensus 341 Y~ds~r~Rlg~N--------~~qlPvN--~P~~~ 364 (488)
T 1a4e_A 341 YADAHRYRLGPN--------FHQIPVN--CPYAS 364 (488)
T ss_dssp HHHHHHHHTCTT--------GGGSGGG--SCTTS
T ss_pred HHHHHHHhcccc--------cccCCcC--CCCCc
Confidence 999999999988 4666555 55555
|
| >2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-61 Score=594.21 Aligned_cols=298 Identities=22% Similarity=0.334 Sum_probs=270.0
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 45 eripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG---- 119 (483)
T 2isa_A 45 EVIPERRMHAKGSGAYGTFTVTHDITKYTKAKIFSDIGKKTDMFARFSTVAGERGAADAERDIRGFSLKFYTE-EG---- 119 (483)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTSCSSCSSCCEEEEEEEET-TE----
T ss_pred CCCCcccccCCccEEEEEEEECCCchHhhhchhccCCCceeeEEEEeecCCCCCCCCCcCCCcCceEEEEecC-CC----
Confidence 68899999999999999999999999999999996 5899999999999999855 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++.+++|++.++ .+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 120 n~DlV~nN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~ 199 (483)
T 2isa_A 120 NWDLAGNNTPVFFLRDPLKFPDLNHAVKRDPRTNMRSAKNNWDFWTSLPEALHQVTIVMSDRGIPATYRHMHGFGSHTFS 199 (483)
T ss_dssp EEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSSGGGSCEECCSCEE
T ss_pred ccceeeeCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhChhHhhHHHHhhccCCCCCCcccccccccCcee
Confidence 499999999999999999999999999998865443 344 4444456777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||++++
T Consensus 200 ~vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~dL~~aI~~g~~p~w~l~vQl~~~ 264 (483)
T 2isa_A 200 FINSDNERYWVKFHFVSQQGIKNLSDAEAGELVG---------------NDRESHQRDLLDSIDNQDFPKWTLKVQIMPE 264 (483)
T ss_dssp EECTTCCEEEEEEEEEESSCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEEEEEG
T ss_pred EEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CChhHHHHHHHHHHHcCCCceEEEEEEeeCh
Confidence 9999999999999999999999999888776422 2467999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|....+|+++|+||+|||+++|+++||+|+||+|+++ ++|||++|+|+|+++||+||+ |||||+|+++|.
T Consensus 265 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~-------D~lLq~R~faY~ 337 (483)
T 2isa_A 265 ADAATVPYNPFDLTKVWPHKDYPLIEVGEFELNRNPQNYFAEVEQAAFNPANVVPGISFSP-------DKMLQGRLFAYG 337 (483)
T ss_dssp GGGGTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCS-------CHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCCccCCcccCCceEEEEEEecCCCccchhhhhhhhcCcccCCCCcccCC-------ChHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+|+++|+|.+ ++|.+|| .|.||+
T Consensus 338 ds~r~Rlg~N--------~~qlPvN--~P~~~~ 360 (483)
T 2isa_A 338 DAQRYRLGVN--------HQHIPVN--APRCPV 360 (483)
T ss_dssp HHHHHHHCTT--------GGGSGGG--SCSSCC
T ss_pred HHHHHhhcCc--------ccccccC--CCCccc
Confidence 9999999998 4665555 555554
|
| >2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-61 Score=593.67 Aligned_cols=298 Identities=17% Similarity=0.270 Sum_probs=269.6
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 48 eripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG---- 122 (491)
T 2j2m_A 48 ERVPERVVHARGFGAHGVFKVKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETLRDPRGFSVKFYTE-EG---- 122 (491)
T ss_dssp CCCBCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTCCTTSCSCCEEEEEEEET-TE----
T ss_pred CCCCCccccCCcceeEEEEEECCcchHhhhchhccCCCccceeEeeccCCCCCCCCCcccCCcCceEEEEecC-Cc----
Confidence 68899999999999999999999999999999996 5899999999999999865 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++.+++|++.++ .+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 123 n~DlV~nN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P~syr~m~g~g~htf~ 202 (491)
T 2j2m_A 123 NWDFVGNNLPVFFIRDAMKFPDMVHSLKPDPRTNIQDPDRYWDFMTLRPESTNMLMHIFTDEGIPASYRKMRGSSVHSFK 202 (491)
T ss_dssp EEEEEEESSSSCSCSSGGGHHHHHHHHSCCTTTCSCCHHHHHHHHHHSGGGHHHHHHHTSGGGSBSCGGGCCEECCSCEE
T ss_pred ceeeeecCCCccccCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhCchHHhHHHHHhccCCCCCChhhccCcccccee
Confidence 499999999999999999999999999998865433 344 4444456777899999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||++++
T Consensus 203 ~vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~DL~~aI~~G~~p~w~l~vQl~~~ 267 (491)
T 2j2m_A 203 WVNAHGNTVYIKLRWVPKEGVHNLSADEATEVQG---------------KDFNHASNDTFQAIENGDFPEWDLFVQVLDP 267 (491)
T ss_dssp EECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEEEECG
T ss_pred eEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CChhHHHHHHHHHHHcCCCCeEEEEEEeech
Confidence 9999999999999999999999999888776422 2467999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|....+|+++|+||+|||+++|+++||+|+||+|+++ ++|||++|+|+|+++||+||+ |||||+|+++|.
T Consensus 268 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~-------D~lLq~R~faY~ 340 (491)
T 2j2m_A 268 ADVENFDFDPLDATKDWFEDVIPFQHVGTMTLNKNVDNYFAETESVGFNPGVLVPGMLPSE-------DKLLQGRLFSYS 340 (491)
T ss_dssp GGGGGSSSCTTCTTCCCCTTTSCCEEEEEEEEEEECSCTCCCCCTCCCCTTCCCTTEEECS-------CHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCCccCCcccCCcEEEEEEEecCCCcchhhhhhhhhcCcccccCCcccCC-------ChHHHHHHHHHH
Confidence 99999999999999999999999999999999999888 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+|+++|+|.+ ++|.+|| .|-||+
T Consensus 341 ds~r~Rlg~N--------~~qlPvN--~P~~~~ 363 (491)
T 2j2m_A 341 DTQRHRIGPN--------YQQLPIN--CPFAQV 363 (491)
T ss_dssp HHHHHHTCTT--------GGGSTTT--CCSSCC
T ss_pred HHHHHhhcCc--------cccCCCC--CCCccc
Confidence 9999999988 4665555 555554
|
| >1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping region, terminal helical region, tetramer, heme group, oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis} SCOP: e.5.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-61 Score=594.36 Aligned_cols=298 Identities=21% Similarity=0.340 Sum_probs=269.8
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 46 eripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG---- 120 (484)
T 1si8_A 46 ERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTD-EG---- 120 (484)
T ss_dssp CCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTCCSSSSSCCEEEEEEEET-TE----
T ss_pred CCCCCccccCCcceeEEEEEECCchhHhhhchhccCCCceeeEEEEecCCCCCCCCCcccCCcCceEEEEecC-CC----
Confidence 68899999999999999999999999999999996 5899999999999999865 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++.+++|++.++ .+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 121 n~DlV~nN~PvFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~ 200 (484)
T 1si8_A 121 NYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFK 200 (484)
T ss_dssp EEEEEEESSSSCSCSCGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEE
T ss_pred ceeeeeccCcccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhCchhHHHHHHHhccCCCCCCcccccccccCceE
Confidence 499999999999999999999999999998865433 344 4444566777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||+|+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||++++
T Consensus 201 ~vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~DL~~aI~~g~~p~w~l~vQl~~~ 265 (484)
T 1si8_A 201 WVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAG---------------KNPDFHIEDLHNAIENQEFPSWTLSVQIIPY 265 (484)
T ss_dssp EECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEEEEEH
T ss_pred EEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CChhHhHHHHHHHHHCCCCceEEEEEEeecc
Confidence 9999999999999999999999999888776422 2467999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.+..+|+++|+||+|||+++|+++||+|+||+|+++ +++||++|+|||+++||+||+ |||||+|+++|.
T Consensus 266 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~-------D~lLq~R~fsY~ 338 (484)
T 1si8_A 266 ADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASP-------DKLLQGRLFAYG 338 (484)
T ss_dssp HHHTTCHHHHTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCS-------CHHHHHHHHHHH
T ss_pred hhhhcCCCCCCcCCccCCcccCCeeEeEEEEECCCccccccccccccccccccCCccccCC-------ChhhhhHHHHHH
Confidence 99888899999999999999999999999999999888 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+|+++|+|.+ ++|.+|| .|-||+
T Consensus 339 ds~r~Rlg~N--------~~qlPvN--~P~~~~ 361 (484)
T 1si8_A 339 DAHRHRVGAN--------SHQLPIN--QAKAPV 361 (484)
T ss_dssp HHHHHHTCTT--------GGGSGGG--CCSSCC
T ss_pred HHHHHhhcCc--------cccCCCC--CCCCcc
Confidence 9999999998 4665555 555554
|
| >1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-61 Score=592.84 Aligned_cols=296 Identities=19% Similarity=0.270 Sum_probs=268.4
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCcc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSSL 1787 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~~ 1787 (2280)
+++++|.+||||+|++|+|++++++++++++++|++||+|||++|||+++|+++ |+.+|+|||||||+++ +| +
T Consensus 44 eripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG----n 118 (484)
T 1m7s_A 44 ERIPERVVHARGTGVKGEFTASADISDLSKATVFKSGEKTPVFVRFSSVVHGNHSPETLRDPHGFATKFYTA-DG----N 118 (484)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSTTCEEEEEEEEECSSSCTTCCTTSCSCCEEEEEEEET-TE----E
T ss_pred CCCCccccCCCcceEEEEEEECCchHHhhhccccCCCCeeEEEEEeccCCCCCCCCcccCCcCceEEEEecC-CC----c
Confidence 688999999999999999999999999999999977999999999999999855 9999999999999997 44 5
Q ss_pred eeeecccccccccCChhhHHHHHhhccchhhhhh----------ccCc---chhhhhhhcccCCCccccceeeeeeeEEE
Q 037878 1788 LDLTLKTGNAFYARTIGDFATWLVCGLAAREEHV----------KRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRLF 1854 (2280)
Q Consensus 1788 ~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~~ 1854 (2280)
|||||||+||||++|+++|++|+++.+++|++.+ ..+| +....+.+.+++|.||++|+|||+|+|+|
T Consensus 119 ~DlVgnN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~ 198 (484)
T 1m7s_A 119 WDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKL 198 (484)
T ss_dssp EEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTSSCCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEE
T ss_pred ceeeecCCCccccCCHHHHHHHHHHhCcCCccCCCCHHHHHHHHHhChhHhhHHHHhhccCCCCCccccccccccCceee
Confidence 9999999999999999999999999999886544 3445 44444567789999999999999999999
Q ss_pred EEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCC
Q 037878 1855 RFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIP 1934 (2280)
Q Consensus 1855 ~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~ 1934 (2280)
+|++|+.+||||||+|.+|+++++.+|+.+... +++|||++||+++|++|++++|+|+||+++++
T Consensus 199 vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g---------------~dpd~l~~DL~~aI~~g~~p~w~l~vQl~~~~ 263 (484)
T 1m7s_A 199 VNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQS---------------KDYSHLTNDLVGAIKKGDFPKWDLYVQVLKPE 263 (484)
T ss_dssp ECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCSCHHHHHHHHHHHTTCCCEEEEEEEEECGG
T ss_pred EcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CChhhhHHHHHHHHHcCCCceEEEEEEeecHH
Confidence 999999999999999999999999888765421 24679999999999999988999999999999
Q ss_pred CccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHHh
Q 037878 1935 QDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEI 2012 (2280)
Q Consensus 1935 d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~ 2012 (2280)
|...++|+++|+||+||| +|+++||+|+||+|+++ +++||++|+|||+++||+||+ |||||+|.++|.+
T Consensus 264 d~~~~~~~~~D~Tk~Wpe--~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~~S~-------DplLq~R~fsY~d 334 (484)
T 1m7s_A 264 ELAKFDFDPLDATKIWPD--VPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSE-------DRLLQGRVFSYAD 334 (484)
T ss_dssp GGGGSSSCTTCTTCCCSS--SCEEEEEEEEEEEECSCHHHHTTTCCCCTTCCCTTEEECS-------CHHHHHHHHHHHH
T ss_pred HhhcCCCCccCCCCcCCC--CCCEEeEEEEECCCcccchhhhhhhcccccccCCccCCCC-------ChHHHHHHHHHHH
Confidence 999999999999999999 99999999999999887 899999999999999999999 9999999999999
Q ss_pred hhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2013 CQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2013 s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
|+++|+|.+ ++|++|| .|.||+
T Consensus 335 s~r~Rlg~N--------~~qlPvN--~P~~~~ 356 (484)
T 1m7s_A 335 TQMYRLGAN--------GLSLPVN--QPKVAV 356 (484)
T ss_dssp HHHHHTCTT--------GGGSGGG--CCSSCC
T ss_pred HHHHhhcCC--------cccCCCC--CCCCcc
Confidence 999999998 5666665 444544
|
| >2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-61 Score=595.69 Aligned_cols=297 Identities=18% Similarity=0.244 Sum_probs=268.7
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 59 eripeR~vHAKG~ga~G~F~vt~dis~~t~A~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG---- 133 (509)
T 2xq1_A 59 ERIPERVVHAKGAGAYGVFEVTDDITDVCSAKFLDTVGKKTRIFTRFSTVGGEKGSADTARDPRGFATKFYTE-DG---- 133 (509)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTSCTTSSSCCEEEEEEEET-TE----
T ss_pred CCCCCccccCCcceeEEEEEECCchhHhhhchhccCCCceeeEEEEeecCCCCCCCCCcCCCcCceEEEEecC-CC----
Confidence 57899999999999999999999999999999996 4999999999999999864 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++++++|++.++ .+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 134 n~DlVgnN~PVFfirD~~kFpd~iha~k~~p~t~~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P~syr~m~g~g~htf~ 213 (509)
T 2xq1_A 134 NLDLVYNNTPIFFIRDPIKFPHFIHTQKRNPATNLKDPNMFWDYLTANDESLHQVMYLFSNRGTPASYRTMNGYSGHTYK 213 (509)
T ss_dssp EEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHHSGGGHHHHHHHHSGGGSBSCSTTCCEECCSCEE
T ss_pred ceeeeecCCCccccCCHHHHHHHHHHhCCCCccCCCCHHHHHHHHHhChhhhhhHHHhhccCCCCCChhhccCcccccee
Confidence 499999999999999999999999999998864443 444 3444456777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||++++
T Consensus 214 ~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~DL~~~I~~g~~p~w~l~VQl~~~ 278 (509)
T 2xq1_A 214 WYNSKGEWVYVQVHFIANQGVHNLLDEEAGRLAG---------------EDPDHSTRDLWEAIEKGDYPSWECYIQTMTL 278 (509)
T ss_dssp EECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHHTCCCEEEEEEEEECH
T ss_pred eecCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CChhHHHHHHHHHHHcCCCceEEEEEEeecH
Confidence 9999999999999999999999999888766422 2467999999999999998899999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.+..+|+++|+||+|||+++|+++||+|+||+|+++ +++||++|+|||+++||+||+ |||||+|+++|.
T Consensus 279 ~d~~~~~f~~~D~Tk~WPe~~~P~i~VG~L~Lnrnp~n~fae~EqlaF~P~~~vpGI~pS~-------D~lLq~R~faY~ 351 (509)
T 2xq1_A 279 EQSKKLPFSVFDLTKVWPHKDFPLRHFGRFTLNENPKNYYAETEQIAFSPSHTVPGMEPSN-------DPVLQSRLFSYP 351 (509)
T ss_dssp HHHTTCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEEECS-------CHHHHHHHHHHH
T ss_pred HHHhcCCCCCCcCcccCCcccCCceEeEEEEECCCccchhhhhhhhhcCccccCCCcCCCC-------ChHHHHHHHHHH
Confidence 99988999999999999999999999999999999988 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCC
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCP 2043 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2280)
+|+++|+|.+ ++|.+|| .|.|+
T Consensus 352 ds~r~Rlg~N--------~~qlPvN--~P~~~ 373 (509)
T 2xq1_A 352 DTHRHRLGPN--------YHQIPVN--CPLKS 373 (509)
T ss_dssp HHHHHHTCTT--------GGGSGGG--SCCSS
T ss_pred HHHHHhhccc--------cccCCcc--CCCCc
Confidence 9999999988 4666555 55555
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-60 Score=638.55 Aligned_cols=504 Identities=17% Similarity=0.154 Sum_probs=306.8
Q ss_pred CCCCCCHHHHHHhhccccccCCceEEEEEcC----CCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCC
Q 037878 465 FPELSSLDGYLKHWGTHRITQKKTLFTWINE----EGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540 (2280)
Q Consensus 465 ~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~----~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s 540 (2280)
+.+..++.+++++++++. |+++|+.+.+. +....+++||+||+++++++|+.|++. |+ +||+|+++++|+
T Consensus 16 ~~~~~tl~~~l~~~a~~~--p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~---g~-~gd~V~i~~~n~ 89 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTH--PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA---SL-HGRAIAVSLDRS 89 (562)
T ss_dssp --CCCCTTHHHHHHHHHC--TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT---TC-SSCEEEEECCSC
T ss_pred ecccCCHHHHHHHHHHHC--CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc---CC-CCCEEEEEeCCC
Confidence 455678889999999874 89999987642 112237899999999999999999988 88 799999999999
Q ss_pred HhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCccccccccccccc
Q 037878 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620 (2280)
Q Consensus 541 ~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (2280)
+++++++|||+++|+++||+++.++.++ +.++++++++++++++.......... .....+...........
T Consensus 90 ~~~~~~~lA~~~~Gav~vpl~~~~~~~~-------l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 160 (562)
T 3ite_A 90 LIAFAIIVGIMKSGNTYVPIEAGLPNDR-------KSFLLRDSRAAMAFVCDNNFDGVELP--PETKVLDTKNQSFIENL 160 (562)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEECTTTTTTCCCC--TTCEEEETTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEecCCcCHHHH-------HHHHHHhcCCCEEEEccccccccccC--ccceeecccchhhhhhc
Confidence 9999999999999999999999999988 88999999999999976543322110 11111111000000000
Q ss_pred cccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHH--------cCCCCCcEEEEEcCchhhhhHH
Q 037878 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR--------YKSTSKTVLVSWLPQYHDMGLI 692 (2280)
Q Consensus 621 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~h~~gl~ 692 (2280)
.............++++|||+|||||||.||||++||+++.+.+...... +.+...+++++++|++|+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (562)
T 3ite_A 161 STQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI- 239 (562)
T ss_dssp HHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-
T ss_pred ccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-
Confidence 00011112234457899999999999999999999999999888766543 347788999999999999986
Q ss_pred HHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCC
Q 037878 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVR 772 (2280)
Q Consensus 693 ~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~ 772 (2280)
..++.++..|+++++.+.. ..+..+.+.++++++|++.++|++++.+. . ...++++||.+++|||+++
T Consensus 240 ~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~----~-----~~~~~~~lr~~~~gG~~l~ 307 (562)
T 3ite_A 240 GEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTG----L-----VPEDAPHLVYLGVGGEKMT 307 (562)
T ss_dssp HHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHT----C-----CGGGSTTCCEEEEESSCCC
T ss_pred HHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcc----c-----CccccCceEEEEEecCCCC
Confidence 4678899999998876532 13567889999999999999999776542 1 1256889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCC
Q 037878 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852 (2280)
Q Consensus 773 ~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~ 852 (2280)
+++.++|.+. .++.++|.||+||+++.++...... ....+++|+|+++++++|+|++++. .+|+
T Consensus 308 ~~~~~~~~~~------~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~d~~~~~-~~~~ 371 (562)
T 3ite_A 308 PRTQQIWSSS------DRVALVNVYGPTEVTIGCSAGRILP---------DSDTRCIGHPLGDSVAHVLAPGSNE-HVKK 371 (562)
T ss_dssp HHHHHHHTTC------SSCEEEEEECCGGGCSCSEEEECCT---------TSCTTEEEEECTTCEEEEECTTSSC-BCCT
T ss_pred HHHHHHHhhC------CCcEEEEeeccchheeeeeeeeecC---------CCCCccccccCCCCeEEEEeCCCCC-CCCC
Confidence 9999988764 3678999999999987766543211 1123578999999999999987654 4589
Q ss_pred CCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHH
Q 037878 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKT 931 (2280)
Q Consensus 853 G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~ 931 (2280)
|+.|||+|+||++++||||+|+.|+..|. ++++||||||+|+++ ||+|+|+||+|||||++|+||+|.|||++
T Consensus 372 g~~GEl~v~g~~v~~GY~~~p~~t~~~~~------~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~ 445 (562)
T 3ite_A 372 GMAGELVIEGSLVANGYLNRPDAKGFCDI------NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEV 445 (562)
T ss_dssp TSCEEEEEESTTSCCEESSCTTCCSEEEE------TTEEEEEEEEEEEECTTSCEEEEEEC-------------------
T ss_pred CCceEEEEeccccchhhCCCccccccccC------CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHH
Confidence 99999999999999999999998875543 346799999999997 99999999999999999999999999999
Q ss_pred HHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEec----------C-CCCCCHHHHHHHHHHHHHhcCc
Q 037878 932 VESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR----------D-GKPVDKDVIENIKTRVVEEHGV 1000 (2280)
Q Consensus 932 L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~----------~-~~~~~~~l~~~l~~~l~~~~~~ 1000 (2280)
|.+++.+.. .++|++.+++..++. .+.+++..... + .....++++++++++|+. |+
T Consensus 446 l~~~~~~~~--~~~v~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~-y~- 512 (562)
T 3ite_A 446 IRSLSPTDI--DVVTLLLNHPGTSKQ---------FLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPA-YM- 512 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCce--eEEEEEecCCCCcce---------EEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCc-cc-
Confidence 999854432 367777666543321 11111111000 0 001113455666666554 44
Q ss_pred ceeEEEEecCCCccCC-CCcccchHHHHHHhhcC
Q 037878 1001 TVASVKLIKPRTMSKT-TSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1001 ~~~~~~lv~~~~lP~t-~sGKvdR~~L~~~~~~~ 1033 (2280)
.|..++.+++||+| ++|||||++|++++.+.
T Consensus 513 --~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 513 --VPDFIIPISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ----------------------------------
T ss_pred --CCcEEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence 44455667999998 89999999999887653
|
| >1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A* 1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A* 3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A* 8cat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-61 Score=593.93 Aligned_cols=292 Identities=21% Similarity=0.329 Sum_probs=267.1
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 63 eripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~rD~RGfAvKfyt~-eG---- 137 (497)
T 1dgf_A 63 ERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTE-DG---- 137 (497)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTSCSSSSSCCEEEEEEEET-TE----
T ss_pred CCCCCcccCCCcceeEEEEEECCChhHhhhchhccCCCceeeEEEEeecCCCCCCCCCcCCCcCceEEEEecC-CC----
Confidence 68899999999999999999999999999999996 5899999999999999865 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++.+++|++.++ .+| +....+.+.+++|.||++|+|||+|+|+
T Consensus 138 n~DlVgnN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~PEs~h~~~~l~sdrg~P~s~r~m~g~g~htf~ 217 (497)
T 1dgf_A 138 NWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFK 217 (497)
T ss_dssp EEEEEEESSSSCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHHCGGGHHHHHHHTSGGGSBSSSTTSCEECCSCEE
T ss_pred ceeEeecCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhCchhhhHHHHHhccCCCCCCccccccccccceE
Confidence 499999999999999999999999999998865443 344 4444556777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||||+|.+|+++++.+|+.+... +++||+++||+++|++|++++|+|+||++++
T Consensus 218 ~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g---------------~d~d~~~~DL~~aI~~G~~p~w~l~vQl~~~ 282 (497)
T 1dgf_A 218 LVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQ---------------EDPDYGIRDLFNAIATGKYPSWTFYIQVMTF 282 (497)
T ss_dssp EECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEEEECH
T ss_pred EEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CCccHHHHHHHHHHHcCCCceEEEEEEeech
Confidence 9999999999999999999999999888776422 2467999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|....+|+++|+||+|||+++|+++||+|+||+|+++ ++|||++|+|+|+++||+||+ |||||+|+++|.
T Consensus 283 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~-------D~lLq~R~fsY~ 355 (497)
T 1dgf_A 283 NQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASP-------DKMLQGRLFAYP 355 (497)
T ss_dssp HHHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSSHHHHTTTCCCCTTCCCTTEEECS-------CHHHHHHHHHHH
T ss_pred hhhhcCCCCCCcCceECCcccCCcEEEEEEEecCCCcccccccccccccccccCCccccCC-------ChhhhhHHhHHH
Confidence 99888999999999999999999999999999999988 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhccccc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVK 2036 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~ 2036 (2280)
+|+++|+|.+ ++|.+||
T Consensus 356 ds~r~Rlg~N--------~~qlPvN 372 (497)
T 1dgf_A 356 DTHRHRLGPN--------YLHIPVN 372 (497)
T ss_dssp HHHHHHTCTT--------GGGSGGG
T ss_pred HHHHHhhcCc--------hhccccc
Confidence 9999999998 5676666
|
| >3e4w_A Putative uncharacterized protein; heme enzyme, catalase, peroxidase, oxidoreductase; HET: HEM; 1.80A {Mycobacterium avium subsp} PDB: 3e4y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=566.54 Aligned_cols=283 Identities=21% Similarity=0.304 Sum_probs=251.8
Q ss_pred HHHhhhhhhhhhhheecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCC--cccccccccEE
Q 037878 1697 IVGNLSANLAATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADD--DARIDARGAAI 1774 (2280)
Q Consensus 1697 ~v~~l~~~~~~~~~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Ai 1774 (2280)
++..++.-. .+++++|.+||||.|++|+|++++|+++++++++|+ |++|||++|||+++|+++ |+.+|+|||||
T Consensus 17 lid~l~~~~---~e~~~~R~vHAKG~~a~G~F~v~~d~~~~t~a~~f~-g~~tpv~vRFSt~~g~~g~~D~~rd~RGfAv 92 (320)
T 3e4w_A 17 AIDAIRGTG---GAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLD-GSTVPALIRFSNGSGNPKQRDGAPGVRGMAV 92 (320)
T ss_dssp HHHHHHHTT---CCCTTSCSSSCSEEEEEEEEEECTTGGGTCCCGGGS-SCEEEEEEEEEESSSCTTCCTTSSCCEEEEE
T ss_pred HHHHHHHhc---CCCCCCccCCCCeeeEEEEEEECCCchHHHhccccC-CceeEEEEEeccCCCCCCCCccCCCCCceEE
Confidence 444444433 367899999999999999999999999999999995 999999999999999864 99999999999
Q ss_pred EeeccCCCCCCcceeeecccccccccCChhhHHHHHhhccchh------hhhhccCc---chhhhhhhcccCCCccccce
Q 037878 1775 RIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAR------EEHVKRVP---HIRDAVWKSLRLSDSYAEMH 1845 (2280)
Q Consensus 1775 k~~~~~~~~~~~~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~p~s~~~~~ 1845 (2280)
||+++ +| .+|||||||+||||++|+++|++|+++++++. ..++..+| +....+.+.+++|.||++|+
T Consensus 93 Kf~t~-eG---~~~Dlv~nN~PvFfird~~~F~~~i~a~k~~~~d~~~~~df~~~~Pes~h~~~~l~s~rg~p~s~~~~~ 168 (320)
T 3e4w_A 93 KFTLP-DG---STTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTE 168 (320)
T ss_dssp EEECT-TS---CEEEEEEESCSSCSCSSHHHHHHHHHHTSSSTTHHHHHHHHHHHCHHHHTTHHHHHHHTCEESCGGGSC
T ss_pred EEEcC-CC---CeEeeeeccccceecCCHHHHhHHHHhhCCCCCCHHHHHHHHHhCHhHHHHHHHHhccCCCCCCcccCC
Confidence 99987 33 26999999999999999999999999998652 34455566 44444557789999999999
Q ss_pred eeeeeeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEE
Q 037878 1846 YYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYI 1925 (2280)
Q Consensus 1846 y~s~~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 1925 (2280)
|||+|+|+|+|++|+.+||||+++|.+|+++++.+|+.. +++|||++||+++|++|+ ++|+
T Consensus 169 ~~s~htf~~~n~~G~~~~vK~~~~p~~g~~~l~~~ea~~------------------~~pd~l~~dL~~~i~~g~-~~w~ 229 (320)
T 3e4w_A 169 YHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARG------------------KDPDFLTDELAARLQDGP-VRFD 229 (320)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEESSCCCEECHHHHHT------------------SCTTHHHHHHHHHHHHSC-EEEE
T ss_pred ccccccEEEEcCCCCEEEEEEEEEeCCCCCCCCHHHhcc------------------CCccHHHHHHHHHHHhCC-ccEE
Confidence 999999999999999999999999999998888776542 257899999999999987 5999
Q ss_pred EEEEEeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccc
Q 037878 1926 FQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASID 2003 (2280)
Q Consensus 1926 l~vQ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~ 2003 (2280)
|+||+++++| +++|+||+|||+ |+++||+|+||+|++| ++|||++|||||+++||+||+ ||||
T Consensus 230 l~vQ~~~~~d------~~~D~Tk~Wpe~--P~~~VG~l~Ln~n~~n~f~e~Eq~aF~P~~~vpGi~ps~-------D~ll 294 (320)
T 3e4w_A 230 FRVQIAGPTD------STVDPSSAWQST--QIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSD-------DPVL 294 (320)
T ss_dssp EEEEECCTTC------CSSCTTSCCCCC--CEEEEEEEEEEEECCSSSSTTCCCCCCTTCCCTTEEECS-------CHHH
T ss_pred EEEEecCCCC------cCCCCCCccCCC--CCEEeEEEEECCCCccchhcccceeeeccccCCccCCCC-------ChHH
Confidence 9999998766 578999999998 9999999999999988 899999999999999999999 9999
Q ss_pred cchhhHHHhhhHhhcCCC
Q 037878 2004 HGRSLIYEICQHLRNGEP 2021 (2280)
Q Consensus 2004 ~~R~~~Y~~s~~~R~~~~ 2021 (2280)
|+|+++|.+|+++|+|++
T Consensus 295 q~R~~aY~ds~r~Rlg~n 312 (320)
T 3e4w_A 295 RFRTLVYSASVKLRTGVD 312 (320)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HhHhHHHHHHHHhhcCCC
Confidence 999999999999999987
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=610.93 Aligned_cols=298 Identities=19% Similarity=0.240 Sum_probs=268.8
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++|+++++++++|+ +||+|||++|||+++|+++ |+.+|+||||||||++ +|
T Consensus 55 eripeR~vHAKG~ga~G~F~vt~d~~~~t~A~~F~~~Gk~tPv~vRFStv~G~~gs~Dt~rd~RGfAvKfyt~-eG---- 129 (688)
T 2iuf_A 55 ERVPERAVHARGTGAHGTFTSYGDWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTARDVHGFATRFYTD-EG---- 129 (688)
T ss_dssp CCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTCCTTSSCCCEEEEEEEET-TE----
T ss_pred CCCccccccCCcceeEEEEEECCCchHhhhhhhhcCCCceEEEEEEccCCCCCCCCCcccCCcCceEEEEecC-CC----
Confidence 68999999999999999999999999999999996 5899999999999999864 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhcc--------------Cc---chhhhhhhcccCCCccccceeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKR--------------VP---HIRDAVWKSLRLSDSYAEMHYYSN 1849 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~p~s~~~~~y~s~ 1849 (2280)
+|||||||+||||++|+++|++|+++.+++|.+.+++ +| +....+.+.+++|.||++|+|||+
T Consensus 130 n~DlVgnN~PVFfirD~~kFpd~i~a~k~~P~t~~~~~~~a~~~~~df~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~ 209 (688)
T 2iuf_A 130 NFDIVGNNIPVFFIQDAILFPDLIHAVKPRGDNQIPQAATAHDSAWDFFSQQPSVLHTLLWAXAGHGIPRSFRHVNGFGV 209 (688)
T ss_dssp EEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTCCSTTCCCSHHHHHHHHHSGGGHHHHHHHHTGGGSBSCGGGCCEEEE
T ss_pred CcceeeecCCccccCCHHHHHHHHHHhCCCCCCCCCchhhhHHHHHHHHHhCcchHHHHHHHccCCCCCCCcccCCcccc
Confidence 4999999999999999999999999999988655544 33 333334566789999999999999
Q ss_pred eeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEE
Q 037878 1850 ICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929 (2280)
Q Consensus 1850 ~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ 1929 (2280)
|+|+|+|++|+.+||||||+|.+|+++++.+|+.+... +++|||++||+++|++|++++|+|+||
T Consensus 210 htf~~vn~~G~~~~VKfh~~P~~G~~~L~~~ea~~~~g---------------~dpd~l~~dL~~~I~~g~~p~w~l~vQ 274 (688)
T 2iuf_A 210 HTFRLVTDDGKTKLVKFHWKGLQGKASFVWEEAQQTAG---------------KNADFXRQDLFQSIQAGRFPEWELGVQ 274 (688)
T ss_dssp EEEEEECTTCCEEEEEEEEEESSCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred cceEEEccCCCEEEEEEEEEeCCCcCCCCHHHHHHhcC---------------CCcchhhHHHHHHHhcCCCceEEEEEE
Confidence 99999999999999999999999999999888775421 246799999999999999899999999
Q ss_pred EeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchh
Q 037878 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRS 2007 (2280)
Q Consensus 1930 ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~ 2007 (2280)
+++++|.+.++|+++|+||+|||+++|+++||+|+||+|+++ +++||++|+|||+++||+||+ |||||+|.
T Consensus 275 l~~~~d~~~~~~~~~D~Tk~WPe~~~P~~~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~~S~-------DplLq~R~ 347 (688)
T 2iuf_A 275 IMQEQDQLKFGFDLLDPTKIVPEELVPVTILGKMQLNRNPXNYFAETEQVMFQPGHIVRGVDFTE-------DPLLQGRL 347 (688)
T ss_dssp EECGGGTTTTSSCTTCTTCCCCTTTSCEEEEEEEEEEECCSSHHHHTTTCCCCTTCCCTTEECCC-------CHHHHHHH
T ss_pred EechHHhhcCCCCCCcCCccCCcccCCceEEEEEEEcCCccchhhhhhhhcccccccCCCcCCCC-------ChHHHhHH
Confidence 999999999999999999999999999999999999999998 899999999999999999999 99999999
Q ss_pred hHHHhhhHhhcC-CCCchhHHHhhhcccccccCCCCCc
Q 037878 2008 LIYEICQHLRNG-EPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2008 ~~Y~~s~~~R~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
++|.+|+++|+| .+ ++|++|| .|.||+
T Consensus 348 fsY~ds~r~Rlgg~N--------~~qlPvN--~P~~~~ 375 (688)
T 2iuf_A 348 FSYLDTQLNRHGGPN--------FEQLPIN--RPRAPI 375 (688)
T ss_dssp HHHHHHHHHHHSSSC--------GGGSTTT--CCSSCC
T ss_pred hHHHHHHHHhccCCc--------ccccccC--CCCCcc
Confidence 999999999996 77 5665554 555554
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=594.72 Aligned_cols=285 Identities=20% Similarity=0.261 Sum_probs=261.9
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+++++|.+||||+|++|+|++++++++++++++|+ +||+|||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 63 eripeR~vHAKG~ga~G~F~v~~d~~~~t~a~~f~~~Gk~tpv~vRFStv~g~~gs~D~~rd~RGfAvKf~t~-eG---- 137 (715)
T 1sy7_A 63 ERIPERVVHARGSGAFGKFKVYESASDLTMAPVLTDTSRETPVFVRFSTVLGSRGSADTVRDVRGFAVKFYTE-EG---- 137 (715)
T ss_dssp CCCCCCSSSCSEEEEEEEEEESSCCTTTCCCGGGTCSSCCEEEEEEEECSSSCTTSCTTSSSCCEEEEEEEET-TE----
T ss_pred CCCCccccCCCceeEEEEEEECCCchHhhhchhhcCCCceEEEEEEeccCCCCCCCCcccCCcCceeEEEecC-CC----
Confidence 67899999999999999999999999999999996 5899999999999999864 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhccC--------------c---chhhhhhhcccCCCccccceeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRV--------------P---HIRDAVWKSLRLSDSYAEMHYYSN 1849 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~p~s~~~~~y~s~ 1849 (2280)
+|||||||+||||++|+++|++|+++.+++|++.+++. | |....+.+.+++|.||++|+|||+
T Consensus 138 n~Dlv~nN~PvFfird~~~F~~~i~a~k~~p~t~~~~~~~~~~~~~df~~~~Pes~h~~~~~~sdr~~p~s~r~m~~~g~ 217 (715)
T 1sy7_A 138 NWDLVGNNIPVFFIQDAIKFPDVIHAGKPEPHNEVPQAQSAHNNFWDFQFNHTEATHMFTWAMSDRAIPRSLRMMQGFGV 217 (715)
T ss_dssp EEEEEEESSSSCSCSSGGGHHHHHHHHSCBTTTTBCTTCCCSHHHHHHHHHCGGGHHHHHHHTSGGGSBSCGGGSCEECC
T ss_pred CcceeeeCCCccccCCHHHHHHHHHHcCCCCccCCCCcccchhHHHHHHhhCchhHHHHHHhccCCCCCccccccccccc
Confidence 49999999999999999999999999999987666543 2 223334455689999999999999
Q ss_pred eeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEE
Q 037878 1850 ICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929 (2280)
Q Consensus 1850 ~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ 1929 (2280)
|+|+|+|++|+.+||||||+|.+|+++++.+|+.+... +++|||++||+++|++|++++|+|+||
T Consensus 218 htf~~vn~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~g---------------~~~d~l~~dL~~~i~~g~~p~w~l~vQ 282 (715)
T 1sy7_A 218 NTYTLINAQGKRHFVKFHWTPELGVHSLVWDEALKLAG---------------QDPDFHRKDLWEAIENGAYPKWKFGIQ 282 (715)
T ss_dssp SCEEEECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred CCceeEcCCCcEEEEEeeEEcCCCCcCCCHHHHHHhhC---------------CCccHHHHHHHHHHhcCCCceEEEEEE
Confidence 99999999999999999999999999999887765532 246799999999999999999999999
Q ss_pred EeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchh
Q 037878 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRS 2007 (2280)
Q Consensus 1930 ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~ 2007 (2280)
+++++|.++++|+++|+||+|||+++|+++||+|+||+|++| +++||++|+|+|+++||++|+ |||+|+|.
T Consensus 283 ~~~~~d~~~~~~~~~D~Tk~Wp~~~~P~~~vG~l~Ln~n~~n~f~e~eq~aF~P~~~vpGI~~S~-------DplLq~R~ 355 (715)
T 1sy7_A 283 AIAEEDEHKFDFDILDATKIWPEDLVPVRYIGEMELNRNPDEFFPQTEQIAFCTSHVVNGIGFSD-------DPLLQGRN 355 (715)
T ss_dssp EEEGGGTTCSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCC-------CTTHHHHH
T ss_pred eeChHHhccCCCCCCcCCccCCccCCCceEeEEEEEcCCcccchhhhhhhhcCccccCCCcCCCC-------ChHHHHHh
Confidence 999999999999999999999999999999999999999987 899999999999999999999 99999999
Q ss_pred hHHHhhhHhhcCCC
Q 037878 2008 LIYEICQHLRNGEP 2021 (2280)
Q Consensus 2008 ~~Y~~s~~~R~~~~ 2021 (2280)
++|.+|+++|+|.+
T Consensus 356 fsY~ds~~~Rlg~n 369 (715)
T 1sy7_A 356 FSYFDTQISRLGVN 369 (715)
T ss_dssp HHHHHTHHHHTCTT
T ss_pred HHHHHHHhhhcCCC
Confidence 99999999999954
|
| >1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme, eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura homomalla} SCOP: e.5.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-56 Score=536.05 Aligned_cols=292 Identities=28% Similarity=0.438 Sum_probs=245.9
Q ss_pred eecc-cc-cccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCCcccccccccEEEeeccCCCCCCcce
Q 037878 1711 KVKS-RY-FHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSSLL 1788 (2280)
Q Consensus 1711 ~~~~-R~-~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~D~~~~~rG~Aik~~~~~~~~~~~~~ 1788 (2280)
++++ |+ +||||+|++|+|+++++ ++++++++|++|++|||++||||+ +.+||..+|+|||||||++++ ++++|
T Consensus 58 ~~p~~R~~vHAKG~ga~G~F~v~~d-~~~t~a~~F~~gk~tpv~vRFSt~-gs~D~~~rd~RGfAvKf~t~d---~~g~~ 132 (374)
T 1u5u_A 58 TLKGFRRATHTVGTGGIGEITIVND-PKFPEHEFFTAGRTFPARLRHANL-KYPDDAGADARSFSIKFADSD---SDGPL 132 (374)
T ss_dssp HHTTTSCSSSCSEEEEEEEEEECSS-CCSCCCSSSCTTCEEEEEEEEEBS-SCSCTTSEECBEEEEESSSSS---SCCSC
T ss_pred CCCCccccCCCCeeeEEEEEEECCC-chhhcccccCCCCeeeEEEEecCC-CCCCCCCCCCCeEEEEEEecC---CCCce
Confidence 4667 88 99999999999999999 999999999889999999999999 656666699999999999762 25679
Q ss_pred eeeccc---ccccccCChhhHHHHHhhccc--hhhhhhccCcchhhh-hhhcccCCCccccceeeeeeeEEEEEeCCcEE
Q 037878 1789 DLTLKT---GNAFYARTIGDFATWLVCGLA--AREEHVKRVPHIRDA-VWKSLRLSDSYAEMHYYSNICRLFRFTDGQEM 1862 (2280)
Q Consensus 1789 D~~~~n---~p~f~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~p~s~~~~~y~s~~~~~~~~~~g~~~ 1862 (2280)
|||||| +||||++|+++|. +.++ .-..++..+|....+ +.+.+++|+||++|+|||+|||+|+|++|+.+
T Consensus 133 Dlv~nNg~~~PvFfird~~~Fi----a~k~p~~~~df~~~~Pes~~~~l~s~r~~P~s~~~~~y~s~htf~~vn~~G~~~ 208 (374)
T 1u5u_A 133 DIVMNTGEANIFWNSPSLEDFV----PVEEGDAAEEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVR 208 (374)
T ss_dssp EEEEEESSSCSCCSHHHHHHHT----TCCTTHHHHHHHTTCHHHHHHHHHHCEESCSCGGGCCEECCSCEEEECTTCCEE
T ss_pred EEEeecCCcccceecCCHHHHH----hcCChHHHHHHHhhCHHHHHHHHhCcCCCCCCcccCCccccceEEEECCCCCEE
Confidence 999999 9999999999994 4443 224567777755444 34445889999999999999999999999999
Q ss_pred EEEEEeecC-----CCCC--CCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCCC
Q 037878 1863 YVKFKLRPY-----DESI--GEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQ 1935 (2280)
Q Consensus 1863 ~vk~~~~P~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~d 1935 (2280)
|||||++|. +|.. +++.+++.+. -.+++.+.+.+++|||++||+++|++|+ ++|+|+||++++++
T Consensus 209 ~vK~~~~P~~~~~~~g~~~~~l~~ee~~~~-------~~~~r~~~~~~~~d~l~~dL~~~I~~g~-~~w~l~vQl~~~~~ 280 (374)
T 1u5u_A 209 YCRYRALPGDVDIKEEDESGRLTEEEQRKI-------WIFSRHENEKRPDDYLRKEYVERLQKGP-VNYRLQIQIHEASP 280 (374)
T ss_dssp EEEEEEEESSSCCCGGGCTTCCCHHHHTTT-------TCCSCCTTCCSCTTHHHHHHHHHHHHSC-EEEEEEEEEEECCT
T ss_pred EEEEEEEeCCcccccCcccCCCCHHHHhhc-------cccccccccCCCccHHHHHHHHHHHcCC-ceEEEEEEEecCCc
Confidence 999999997 5554 5554443321 1133333456789999999999999988 99999999999655
Q ss_pred ccccccccccCCCCCCCCCCCceeeEEEEecCCCChhhhccccccCCcCCCccccccCCCcccccccccchhhHHHhhhH
Q 037878 1936 DEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQH 2015 (2280)
Q Consensus 1936 ~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~s~~ 2015 (2280)
.+++ +++|+||+|||+++|+++||+|+||+|+++.+|||++|||||+++||+|+.+.|+.||.||||+|+++|.+|++
T Consensus 281 ~d~~--~~~D~Tk~Wpe~~~P~i~VG~l~Ln~~~p~~e~EqlaF~P~~~vpGi~~s~pSs~~D~~~llq~R~~aY~ds~~ 358 (374)
T 1u5u_A 281 DDTA--TIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQH 358 (374)
T ss_dssp TCCG--GGGCTTSCCCTTTSCCEEEEEEEEEEECCHHHHHHCCCCTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHHHHH
T ss_pred cccc--CcccCceeCCcccCCcEEEEEEEECCCCCchhhhHhhcCccccCCCccccccccCCCcchHHHHHHHHHHHHHH
Confidence 5564 68999999999999999999999999966669999999999999999888666666777999999999999999
Q ss_pred hhcCCC
Q 037878 2016 LRNGEP 2021 (2280)
Q Consensus 2016 ~R~~~~ 2021 (2280)
+|+|++
T Consensus 359 ~R~g~n 364 (374)
T 1u5u_A 359 LRKLKI 364 (374)
T ss_dssp HHHHTT
T ss_pred hhcccc
Confidence 999875
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=553.08 Aligned_cols=422 Identities=29% Similarity=0.443 Sum_probs=326.6
Q ss_pred CCCHHHHHHhhccccccCCceEEEEEcCC---CceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHH
Q 037878 468 LSSLDGYLKHWGTHRITQKKTLFTWINEE---GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFV 544 (2280)
Q Consensus 468 ~~tl~~~l~~~a~~~~~~d~~A~~~~~~~---g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~ 544 (2280)
..++.+++++++++. |+++|+.+.+.+ ....+++||+||+++++++|+.|+++ |+ +||+|+++++|+++++
T Consensus 23 ~~tl~~~l~~~a~~~--pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~---g~-~gd~V~i~~~n~~e~~ 96 (480)
T 3t5a_A 23 VRSLPAALRACARLQ--PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC---GS-TGDRVVISAPQGLEYV 96 (480)
T ss_dssp -CCHHHHHHHHHHHS--TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS---SC-TTCEEEEECCSSHHHH
T ss_pred cccHHHHHHHHHHhC--CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc---CC-CCCEEEEEcCCcHHHH
Confidence 468999999998874 899999987621 12237899999999999999999988 86 9999999999999999
Q ss_pred HHHHHHHHcCCeEEeCCC---CCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCC--CCCC---Cccccccccc
Q 037878 545 DAFFGCMRAKVLPVPVLP---PDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGS--WPNL---PWLHTDSWVK 616 (2280)
Q Consensus 545 va~LA~l~aGa~~vpld~---~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~---~~~~~~~~~~ 616 (2280)
+++|||+++|+++||+++ ..+.++ +.++++++++++++++......+.... .+.. ..+..+...
T Consensus 97 ~~~lA~~~~G~v~vpl~~~~~~~~~~~-------l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (480)
T 3t5a_A 97 VAFLGALQAGRIAVPLSVPQGGVTDER-------SDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD- 168 (480)
T ss_dssp HHHHHHHHTTCEEEEECSCCSCTTCCH-------HHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-
T ss_pred HHHHHHHHhCcEEEeeCCCCccchHHH-------HHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-
Confidence 999999999999999999 667777 889999999999999876654332211 0000 111111110
Q ss_pred cccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCC------CcEEEEEcCchhhhh
Q 037878 617 NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTS------KTVLVSWLPQYHDMG 690 (2280)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~------~d~~l~~~pl~h~~g 690 (2280)
.............++|+|||+|||||||.||||++||+|+++.+......+.... ++++++++|++|+++
T Consensus 169 ----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 244 (480)
T 3t5a_A 169 ----LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244 (480)
T ss_dssp ----TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTH
T ss_pred ----cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccH
Confidence 0011112334567899999999999999999999999999999998888888877 999999999999999
Q ss_pred HHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCC
Q 037878 691 LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP 770 (2280)
Q Consensus 691 l~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~ 770 (2280)
++..++.+++.|+++++.++..+..+|..+++.++++++| +..+|+++..++...... ......++++||.+++|||+
T Consensus 245 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~-~~~~~~~l~~lr~i~~gG~~ 322 (480)
T 3t5a_A 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD-DDMAGRDLGNILTILSGSER 322 (480)
T ss_dssp HHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT-GGGTTCCCTTCCEEEECCTT
T ss_pred HHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc-ccccccchhhhheeeecCCc
Confidence 9888999999999999987655556899999999999999 566666666665443211 11234678999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeec---------------CCCceeeccccCCCCC
Q 037878 771 VRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILD---------------WQGRVCCGYVDQNDPD 835 (2280)
Q Consensus 771 l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~---------------~~g~~~~g~vG~p~pg 835 (2280)
++++++++|.+.+...|++++.++|.||+||++++++.......+.... ..+....+++|+|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~- 401 (480)
T 3t5a_A 323 VQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS- 401 (480)
T ss_dssp CCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-
T ss_pred CCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-
Confidence 9999999999998766777889999999999998877654322111000 011245678999999
Q ss_pred ceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhcc----CCCCCceeecCcEEEEECCeEEEEec
Q 037878 836 VDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQ----NNRGRKYTRTGDLGRIIDGKFFITGR 911 (2280)
Q Consensus 836 ~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~----~~~~~~~yrTGDlgr~~dG~l~~~GR 911 (2280)
++++|+|++++. .+|.|++|||+|+||++++||||+|++|+++|..++. +.+++|||||||+|+++||+|+|+||
T Consensus 402 ~~~~ivd~~~g~-~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~ddG~l~~~GR 480 (480)
T 3t5a_A 402 PIVRIVDSDTCI-ECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGR 480 (480)
T ss_dssp SEEEEEETTTTE-ECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEETTEEEECC-
T ss_pred CEEEEEcCCCCc-CCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEECCEEEEeCC
Confidence 999999988654 4589999999999999999999999999999963322 22357899999999999999999998
|
| >3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=567.33 Aligned_cols=298 Identities=27% Similarity=0.411 Sum_probs=257.0
Q ss_pred hhheecccc-cccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCCcccccccccEEEeeccCCCCCCc
Q 037878 1708 TTLKVKSRY-FHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1708 ~~~~~~~R~-~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
...+.+.|+ +||||+||+|+|+|++|+ +++++++|++|++|||++||||+++ +||+.+|+|||||||++++. ++
T Consensus 56 ~g~~~g~Rr~vHAKG~ga~G~F~v~~d~-~~t~a~~F~~gk~tpv~vRFStv~~-~Dd~~rd~RGfAvKf~t~e~---Gg 130 (1066)
T 3dy5_A 56 GTTLKGFRRATHTVGTGGIGEITIVNDP-KFPEHEFFTAGRTFPARLRHANLKY-PDDAGADARSFSIKFADSDS---DG 130 (1066)
T ss_dssp HHHTTTSSCSSSCSBCCEEEEEEECSSC-CSCCCSSSCTTCCEEEEEECBBSSC-SCTTSCCBBEEEEESSSSSS---CC
T ss_pred cCCCCCccccccCCeeeEEEEEEECCCH-HHHhhhhhcCCCEEEEEEEcCCCCC-CCCCCCCCceEEEEEEeCCC---Cc
Confidence 345666675 999999999999999999 9999999999999999999999876 56778999999999998731 34
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchh-hhhhccCcchh-hhhhhcccCCCccccceeeeeeeEEEEEeCCcEEEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAR-EEHVKRVPHIR-DAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYV 1864 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~p~s~~~~~y~s~~~~~~~~~~g~~~~v 1864 (2280)
+|||||||+||||++|+++|++|+++++++. ..++..+|... ..+.+.+++|+||++|+|||+|||+|+|++|+.+||
T Consensus 131 n~DlV~nN~PvFfird~~~F~~fi~a~kp~~~~df~~~~Pes~~~~l~sdr~~P~s~~~m~~~s~htf~~~n~~G~~~~V 210 (1066)
T 3dy5_A 131 PLDIVMNTGEANIFWNSPSLEDFVPVEEGDAAEEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYC 210 (1066)
T ss_dssp SCEEEEESSSSCSCCSHHHHHTTTTCCTTHHHHHHHTSSHHHHHTHHHHBCSSCSCGGGCCEECCSCEEEECTTCCEEEE
T ss_pred eeeeeeccCCccccCCHHHHHHHHHhcCchHHHHHHhhCcHHHHHHHhccCCCCCCcccCCcccccceEEEcCCCCEEEE
Confidence 6999999999999999999999999997633 56677777663 334455899999999999999999999999999999
Q ss_pred EEEeecC------CCCC-CCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCCCcc
Q 037878 1865 KFKLRPY------DESI-GEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDE 1937 (2280)
Q Consensus 1865 k~~~~P~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~d~~ 1937 (2280)
|||++|. +|++ +++.+++... -.+++.....+++|||++||+++|++|+ ++|+|+||++++++.+
T Consensus 211 Kf~~~P~~~~~~~~G~~~~l~~ee~~~~-------~~~~r~~~~~~~pd~l~~dL~~~i~~g~-p~w~l~vQl~~~~~~d 282 (1066)
T 3dy5_A 211 RYRALPGDVDIKEEDESGRLTEEEQRKI-------WIFSRHENEKRPDDYLRKEYVERLQKGP-VNYRLQIQIHEASPDD 282 (1066)
T ss_dssp EEEEEECSSCCCGGGCTTCCCHHHHHTC-------SCCSCCSSCCCCTTTTTTTTTTTTTSSC-EEEEEEEEEEECCTTC
T ss_pred EEEEEECCccccccccccCCCHHHHhhc-------cccccccccCCCccHHHHHHHHHHHcCC-ceEEEEEEEecCCcCC
Confidence 9999994 4455 4555443211 1233344556688999999999999987 9999999999976666
Q ss_pred ccccccccCCCCCCCCCCCceeeEEEEecCCCChhhhccccccCCcCCCccccccCCCcccccccccchhhHHHhhhHhh
Q 037878 1938 AMQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLR 2017 (2280)
Q Consensus 1938 ~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~s~~~R 2017 (2280)
++ +++|+||+|||+++|+++||+|+||+|++|++|||++|||+|+++||++|+++||+|+.+|+|+|+.||+.|+++|
T Consensus 283 ~~--d~~D~Tk~Wp~~~~P~i~VG~l~Lnrn~~nae~Eq~aF~P~~~vpGi~~s~dks~~plgsI~raR~~vY~~s~~~R 360 (1066)
T 3dy5_A 283 TA--TIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLR 360 (1066)
T ss_dssp CG--GGGCTTSCCCGGGSCCEEEEEEEEEEECCHHHHTTCCCCTTCCCTTSCCCCCSSTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CC--CCCCCCeECCcccCceEEEEEEEECCCCCcchhhhhccCccccCCCccCCCccccCCccHHHHHHHHHHHHHHHhh
Confidence 64 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 037878 2018 NGE 2020 (2280)
Q Consensus 2018 ~~~ 2020 (2280)
+..
T Consensus 361 ~~~ 363 (1066)
T 3dy5_A 361 KLK 363 (1066)
T ss_dssp HHT
T ss_pred hcc
Confidence 553
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=446.72 Aligned_cols=316 Identities=17% Similarity=0.195 Sum_probs=241.9
Q ss_pred CCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEEeCcccc
Q 037878 634 PDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTF 713 (2280)
Q Consensus 634 ~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl~~~~~~ 713 (2280)
.||+|||+|||||||+||||++||+++.+++......++++++|++++++|++|++|+. .++.++..|+++++.++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~~- 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPTA- 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCCS-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCccc-
Confidence 47899999999999999999999999999999999999999999999999999999984 5778888899988876532
Q ss_pred ccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCCCCCccc
Q 037878 714 IKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVM 793 (2280)
Q Consensus 714 ~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g~~~~~v 793 (2280)
+ .++.++++++|++.++|+++..+++.... ..++++||.+++|||++++++.+++.+. ++++
T Consensus 114 --~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~------~~~l~~lr~v~~gG~~l~~~~~~~~~~~-------~~~~ 175 (358)
T 4gs5_A 114 --N---PLAGLDHADFDFVAMVPMQLQSILENSAT------SGQVDRLGKVLLGGAPVNHALAMQISDL-------AMPV 175 (358)
T ss_dssp --C---TTTTCSSCCCSEEEECHHHHHHHHHCTTT------GGGGGGGCSEEECSSCCCHHHHHHHHTC-------SSCE
T ss_pred --c---HHHHHHHhCCeEEEcChHHHHHhhccccc------cccCCcceEEEEcccCCCchheeccccc-------CceE
Confidence 3 35678999999999999999888754322 2568899999999999999999998752 5679
Q ss_pred ccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCc
Q 037878 794 APGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGRE 873 (2280)
Q Consensus 794 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p 873 (2280)
+|.||+||++..++...... ...+.+|.+.||+++.+. +.|||+++|+.+
T Consensus 176 ~~~YG~TEt~~~~~~~~~~~----------~~~g~~~~~~pgv~~~~~------------~~Gel~~~g~~~-------- 225 (358)
T 4gs5_A 176 YQSYGMTETVSHVALKALNG----------PEASELYVFLPGIQYGVD------------ERGCLHISGAVT-------- 225 (358)
T ss_dssp EEEEECGGGSSEEEEEECSS----------TTCCSCEEECTTCEEEEC------------TTSEEEEESGGG--------
T ss_pred Eeccccccccceeecccccc----------cccceeeccCCCeEEEec------------CcCceEEecccc--------
Confidence 99999999988766543221 123567778888877652 348999987521
Q ss_pred hhhHHHHhhhccCCCCCceeecCcEEEEECCeEEEEecCCCeEEECCeeechHHHHHHHH---hccCCcCCceeEE-Eec
Q 037878 874 ELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVE---SSTEHIRPGCCAV-IGV 949 (2280)
Q Consensus 874 ~~t~~~f~~~~~~~~~~~~yrTGDlgr~~dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~---~~p~v~~~~~aaV-v~~ 949 (2280)
.++||||||+|+++++.++|+||+|||||++|+||+|.|||++|. +||+|.+ |+| .+.
T Consensus 226 ---------------~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~---a~vv~~~ 287 (358)
T 4gs5_A 226 ---------------NGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGN---AFFCWWE 287 (358)
T ss_dssp ---------------TTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCC---CEEEEEE
T ss_pred ---------------cCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccE---EEEEEec
Confidence 148999999999985558899999999999999999999998774 5788865 444 466
Q ss_pred cccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccchHHHHHH
Q 037878 950 PEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029 (2280)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~ 1029 (2280)
+++.+++ .+ +++++...+....+++.++++++|+. |++|. .++.+++||+|+||||||++|+++
T Consensus 288 ~d~~~ge----------~~--~a~v~~~~~~~~~~~l~~~l~~~L~~-~~~P~---~i~~v~~lP~t~~GKi~R~~L~~~ 351 (358)
T 4gs5_A 288 PDAKLGQ----------KL--VLVIENAMPEALTERLTAEIRSRVST-YENPK---HIYFAKAFAKTQTDKIDKRATFQK 351 (358)
T ss_dssp EETTTEE----------EE--EEEEESCCCHHHHHHHHHHHHHHSCG-GGSCS---CEEEESSCCBCTTSCBCHHHHHHH
T ss_pred CCccCCE----------EE--EEEEECCCCCcCHHHHHHHHHhhCCC-CCCce---EEEEECCcCCCCCCChhHHHHHHH
Confidence 6654432 12 22222222222224555556555543 44444 344458999999999999999998
Q ss_pred hhcC
Q 037878 1030 FVDG 1033 (2280)
Q Consensus 1030 ~~~~ 1033 (2280)
+.+.
T Consensus 352 l~e~ 355 (358)
T 4gs5_A 352 LSDS 355 (358)
T ss_dssp TC--
T ss_pred hhhh
Confidence 7553
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=419.63 Aligned_cols=329 Identities=19% Similarity=0.166 Sum_probs=251.8
Q ss_pred CCC-CCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH---HcCCCCCcEEEEEcCchhhhhHHHHHHHHHHccceEEE
Q 037878 632 SQP-DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK---RYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL 707 (2280)
Q Consensus 632 ~~~-~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~vl 707 (2280)
..+ +|+++|+|||||||.||||++||+++.+.+..... .+++.++|++++++|++|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 445 89999999999999999999999999877766543 45889999999999998877777788899999999887
Q ss_pred eCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCCC
Q 037878 708 FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFG 787 (2280)
Q Consensus 708 ~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~g 787 (2280)
.++ .++..+++.++++++|++.++|+++..+++....... ..+++++|.+++|||++++++.+++.+.+
T Consensus 162 ~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~~~~~~lr~i~~gGe~l~~~~~~~~~~~~---- 230 (436)
T 3qov_A 162 AAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI---DPRETTLKTLVIGAEPHTDEQRRKIERML---- 230 (436)
T ss_dssp CCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC---CTTSSSCCEEEEESSCCCHHHHHHHHHHH----
T ss_pred CCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC---CcccCCccEEEEeCCcCCHHHHHHHHHHh----
Confidence 653 2889999999999999999999999999877655431 12478999999999999999999999875
Q ss_pred CCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCccc
Q 037878 788 LSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI 867 (2280)
Q Consensus 788 ~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~ 867 (2280)
++.++|.||+||+++.++....... ...+.|.++++++|+|++++. .+|+|+.|||+|+|+
T Consensus 231 --g~~v~~~YG~TE~~~~~~~~~~~~~------------~g~~~~~~~~~v~i~d~~~g~-~~~~g~~Gel~v~~~---- 291 (436)
T 3qov_A 231 --NVKAYNSFGMTEMNGPGVAFECQEQ------------NGMHFWEDCYLVEIIDPETGE-PVPEGEIGELVLTTL---- 291 (436)
T ss_dssp --TSEEEEEEEEGGGTEEEEEEECTTC------------SSEEECTTTEEEEEECTTTCS-BCSTTCCEEEEEEES----
T ss_pred --CccEEecCcchhhcCCeeEEecCCC------------CeeEEccCceEEEEEECCCCC-CCCCCCceEEEEecc----
Confidence 5679999999999654332211110 114567789999999976554 457999999999983
Q ss_pred ccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CC------e---EEEEecCCCeEEECCeeechHHHHHHHHhccC
Q 037878 868 GYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DG------K---FFITGRIKDLIIVAGRNVYSADVEKTVESSTE 937 (2280)
Q Consensus 868 GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG------~---l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~ 937 (2280)
|++.| ..+||||||+|+++ || . ++|+||+||+||++|+||+|.|||++|.+||+
T Consensus 292 --------~~~~~--------~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~ 355 (436)
T 3qov_A 292 --------DREMM--------PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPE 355 (436)
T ss_dssp --------SCCSS--------CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTT
T ss_pred --------CcCCc--------eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcC
Confidence 22222 14799999999997 66 4 69999999999999999999999999999999
Q ss_pred CcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCC-----CHHHHHHHHHHHHHhcCcceeEEEEecCCC
Q 037878 938 HIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV-----DKDVIENIKTRVVEEHGVTVASVKLIKPRT 1012 (2280)
Q Consensus 938 v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~-----~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~ 1012 (2280)
|.+ ++|++.+++.. ...++++++.. +... .+++.+.++++|.+++++|. .+.++.+++
T Consensus 356 v~~---~~vv~~~~~~~------------~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~-~i~~v~~~~ 418 (436)
T 3qov_A 356 LGS---NYLITLETVNN------------QDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTP-KVKLVKKGS 418 (436)
T ss_dssp EEE---EEEEEEEEETT------------EEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCC-EEEEECTTC
T ss_pred cCC---cEEEEEEcCCC------------CcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCce-EEEEeCCCc
Confidence 865 77777655321 11223333333 3222 25788899999998778775 455665669
Q ss_pred ccCCCCcccchH
Q 037878 1013 MSKTTSGKIKRF 1024 (2280)
Q Consensus 1013 lP~t~sGKvdR~ 1024 (2280)
||+|+ ||++|.
T Consensus 419 lP~t~-GKi~R~ 429 (436)
T 3qov_A 419 LPQSE-GKAVRV 429 (436)
T ss_dssp CC--------CE
T ss_pred ccCcC-CcceEE
Confidence 99999 999995
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=412.95 Aligned_cols=331 Identities=19% Similarity=0.185 Sum_probs=253.4
Q ss_pred CCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHH---HcCCCCCcEEEEEcCch-hhhhHHHHHHHHHHccceEE
Q 037878 631 ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRK---RYKSTSKTVLVSWLPQY-HDMGLIGGLFTAMVGGSTAI 706 (2280)
Q Consensus 631 ~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~-h~~gl~~~i~~~L~~G~~~v 706 (2280)
...++++++|+|||||||.||||++||+++.+....... .+++.++|++++++|+. |..++ ..++.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence 456789999999999999999999999998876655443 57889999999999995 55554 56788899999988
Q ss_pred EeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCC
Q 037878 707 LFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786 (2280)
Q Consensus 707 l~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~ 786 (2280)
+.++ .++..+++.++++++|++.++|+++..+++........ .+++++|.+++|||++++++.+++.+.+
T Consensus 167 ~~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~---~~~~~lr~i~~gGe~l~~~~~~~~~~~~--- 236 (443)
T 2y4o_A 167 PMSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD---PAESSLKIGIFGAEPWTQALRNEVETRV--- 236 (443)
T ss_dssp CCCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC---GGGSSCCEEEEESSCCCHHHHHHHHHHH---
T ss_pred ECCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC---cccCCceEEEECCCcCCHHHHHHHHHHh---
Confidence 7653 28999999999999999999999999988765533211 2357899999999999999999998875
Q ss_pred CCCCcccccccCccccccc-eecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCc
Q 037878 787 GLSQGVMAPGYGLAENCVF-VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSA 865 (2280)
Q Consensus 787 g~~~~~v~n~YG~TE~~~~-~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v 865 (2280)
++.++|.||+||+++. ++..... .. .| .+.|.+++.++|+|++++ ..+|+|+.|||+|+|.
T Consensus 237 ---g~~v~~~YG~TE~~g~~~~~~~~~-~~----------~g-~~~~~~~~~~~i~d~~~g-~~~~~G~~Gel~v~~~-- 298 (443)
T 2y4o_A 237 ---GIDALDIYGLSEVMGPGVACECVE-TK----------DG-PVIWEDHFYPEIIDPVTG-EVLPDGSQGELVFTSL-- 298 (443)
T ss_dssp ---TCEEEEEEEETTTTEEEEEEECTT-TC----------CS-EEECTTTEEEEEECTTTC-CBCCTTCCEEEEEEES--
T ss_pred ---CcCEEeccCchhhcCCeEEeccCC-CC----------Cc-eEEccCCeEEEEEcCCCC-CCCCCCCceEEEEeCC--
Confidence 4679999999998543 2221111 00 12 334678999999998755 4457999999999982
Q ss_pred ccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-C-CeE-----EEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 866 GIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-D-GKF-----FITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 866 ~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-d-G~l-----~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
|+++|. .+||||||+|+++ | |.+ +|+||+||+||++|+||+|.|||++|.+||+|
T Consensus 299 ----------t~~~~p--------~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V 360 (443)
T 2y4o_A 299 ----------TKEAMP--------VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLL 360 (443)
T ss_dssp ----------SCSSSC--------CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTE
T ss_pred ----------CcccCh--------hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCc
Confidence 223331 3799999999997 7 986 89999999999999999999999999999998
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecC--CC----CCCHHHHHHHHHHHHHhcCcceeEEEEecCCC
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRD--GK----PVDKDVIENIKTRVVEEHGVTVASVKLIKPRT 1012 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~--~~----~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~ 1012 (2280)
.+ ++|++++++..+ +.+ +++++..+ +. ...+++.+.++++|++++++|. .+.++.+++
T Consensus 361 ~~---~~vv~~~~~~~~----------~~~--~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~-~v~~v~~~~ 424 (443)
T 2y4o_A 361 SG---QFQITLSRDGHM----------DRL--DLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSS-GVTVLAAGG 424 (443)
T ss_dssp EE---EEEEEEEEETTE----------EEE--EEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCC-EEEEECTTC
T ss_pred Cc---cEEEEEecCCCC----------ceE--EEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCce-EEEEeCCCc
Confidence 64 677776553211 122 22222232 11 1125678889999887666664 356666789
Q ss_pred ccCCCCcccchH
Q 037878 1013 MSKTTSGKIKRF 1024 (2280)
Q Consensus 1013 lP~t~sGKvdR~ 1024 (2280)
||+|+|||++|+
T Consensus 425 lP~t~~GKi~r~ 436 (443)
T 2y4o_A 425 IPATATGKARRV 436 (443)
T ss_dssp SCCCTTSCCCSE
T ss_pred ccCccCCcceEE
Confidence 999999999996
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=404.16 Aligned_cols=330 Identities=19% Similarity=0.178 Sum_probs=252.4
Q ss_pred CCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHH---HHcCCCCCcEEEEEcCc-hhhhhHHHHHHHHHHccceEE
Q 037878 631 ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR---KRYKSTSKTVLVSWLPQ-YHDMGLIGGLFTAMVGGSTAI 706 (2280)
Q Consensus 631 ~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~~gl~~~i~~~L~~G~~~v 706 (2280)
...++++++|+|||||||.||||++||+++...+.... ..+++.++|++++.+|+ +|..++ ..++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 34678999999999999999999999999887765443 35788999999999998 566665 45788899999988
Q ss_pred EeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcCC
Q 037878 707 LFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPF 786 (2280)
Q Consensus 707 l~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~~ 786 (2280)
+.++ .++..+++.++++++|++.++|+++..+++........ .+++++|.+++|||++++++.+++.+.+
T Consensus 165 ~~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~---~~~~~lr~i~~gGe~l~~~~~~~~~~~~--- 234 (437)
T 2y27_A 165 PFGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD---PVQSSLRIGIFGAEPWTNDMRVAIEQRM--- 234 (437)
T ss_dssp CCCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC---GGGSSCCEEEEESSCCCHHHHHHHHHHH---
T ss_pred eCCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC---cccCCeeEEEEcCccCCHHHHHHHHHHH---
Confidence 7653 28999999999999999999999999988765533211 1357899999999999999999998875
Q ss_pred CCCCcccccccCccccccc-eecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcCCCc
Q 037878 787 GLSQGVMAPGYGLAENCVF-VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSA 865 (2280)
Q Consensus 787 g~~~~~v~n~YG~TE~~~~-~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v 865 (2280)
++.++|.||+||+++. ++..... .. .| ++.|.+++.++|+|++++ ..+|.|+.|||+|+|.
T Consensus 235 ---g~~v~~~YG~TE~~g~~~~~~~~~-~~----------~g-~~~~~~~~~~~i~d~~~g-~~~~~g~~Gel~v~~~-- 296 (437)
T 2y27_A 235 ---GIDAVDIYGLSEVMGPGVASECVE-TK----------DG-PTIWEDHFYPEIIDPETG-EVLPDGELGELVFTSL-- 296 (437)
T ss_dssp ---TSEEEEEEEETTTTEEEEEECCTT-TC----------SS-CEECTTTEEEEEECTTTC-CBCCTTCCEEEEEEES--
T ss_pred ---CcCEEecCCchhhcCCeeEEecCC-CC----------Cc-eeEccCceEEEEEcCCCC-CCCCCCCccEEEEecC--
Confidence 4679999999998543 3221111 00 11 345678999999998755 4557999999999982
Q ss_pred ccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE--CCeE-----EEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 866 GIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII--DGKF-----FITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 866 ~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~--dG~l-----~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
|+++|. .+||||||+|+++ ||.+ +|+||+||+||++|+||+|.|||++|.+||+|
T Consensus 297 ----------t~~~~~--------~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V 358 (437)
T 2y27_A 297 ----------TKEALP--------IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRAL 358 (437)
T ss_dssp ----------SCSSSC--------CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTB
T ss_pred ----------CcCCch--------hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCc
Confidence 223331 3799999999996 4885 89999999999999999999999999999999
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC----CCHHHHHHHHHHHHHhcCcceeEEEEecCCCcc
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP----VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMS 1014 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP 1014 (2280)
.+ ++|++++++.. ...++++++..++.. ..+++.+.++++|++++.+|.. +.++.+++||
T Consensus 359 ~~---~~vv~~~~~~~------------~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-v~~v~~~~lP 422 (437)
T 2y27_A 359 AP---HYQIVLTKEGP------------LDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAV-INVLPVNGIE 422 (437)
T ss_dssp CS---CCEEEEEEETT------------EEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEE-EEECCTTCSC
T ss_pred Cc---cEEEEEeecCC------------CceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceE-EEEeCCCCcc
Confidence 65 66666554321 112233333333322 1256788899998886666643 5566668999
Q ss_pred CCCCcccchH
Q 037878 1015 KTTSGKIKRF 1024 (2280)
Q Consensus 1015 ~t~sGKvdR~ 1024 (2280)
+|+ ||++|+
T Consensus 423 ~t~-GKi~r~ 431 (437)
T 2y27_A 423 RSV-GKARRV 431 (437)
T ss_dssp CCS-SSCCCE
T ss_pred CCC-CcceEE
Confidence 999 999995
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-25 Score=278.41 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=173.1
Q ss_pred CCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHH---HHcCCCCCcEEEEEcCc-hhhhhHHHHHHHHHHccceEEE
Q 037878 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR---KRYKSTSKTVLVSWLPQ-YHDMGLIGGLFTAMVGGSTAIL 707 (2280)
Q Consensus 632 ~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~~gl~~~i~~~L~~G~~~vl 707 (2280)
..++++++|+|||||||+||||+++|+++.+.+.+.. ..+++.++|++++++|+ +|+.++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 4678999999999999999999999999998887554 44567899999999999 99998754 455588888 444
Q ss_pred eCccccccCHH-----------------------HHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEE
Q 037878 708 FSPLTFIKNPL-----------------------LWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764 (2280)
Q Consensus 708 ~~~~~~~~~p~-----------------------~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l 764 (2280)
... + +|. .+++.++++++|++.++|+++..+++..... ..+++++|.+
T Consensus 166 ~~~--~--dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~-----~~~~~~lr~i 236 (369)
T 3hgu_A 166 SID--I--DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-----LQMKQSLAQI 236 (369)
T ss_dssp CCC--C--CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-----HHHHHHCSEE
T ss_pred Ccc--C--ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-----ccccCCeeEE
Confidence 322 2 565 7778999999999999999998887543211 1346789999
Q ss_pred EEecCCCCHHHHHHHH-HHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeec-cccCC------CCCc
Q 037878 765 MVAAEPVRQTTVKRFV-ELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCG-YVDQN------DPDV 836 (2280)
Q Consensus 765 ~~gGe~l~~~l~~~~~-~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g-~vG~p------~pg~ 836 (2280)
++|||++++++.+++. +.+ +++.++|.||+||++++++... + ++|+| .|++
T Consensus 237 ~~gGe~l~~~~~~~~~~~~~-----p~~~v~~~YG~TE~~~~~~~~~----------------~~~~G~~~~~~~~~~~~ 295 (369)
T 3hgu_A 237 TLGGTELNLDEIKFIASEIL-----PDCEFSASYGSTSALGVSRSLL----------------ITSESQQVIYDSFSPFI 295 (369)
T ss_dssp EEESSCCCHHHHHHHHHHTC-----TTSEEEEEEEEGGGTEEEEECC----------------BCTTCSSCEEECCTTTE
T ss_pred EECCccCCHHHHHHHHHHhC-----CCcEEEcccCchhhhcceeccc----------------cccCCCcccccCCCCCe
Confidence 9999999999999999 764 4789999999999986653211 2 36777 8999
Q ss_pred eEEEEcCCCCcccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE---CC-------eE
Q 037878 837 DIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII---DG-------KF 906 (2280)
Q Consensus 837 ~v~Ivd~~~~~~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~---dG-------~l 906 (2280)
+++|+|++++ +++|+|+.|||+|++. +.+.|. -.|+|||+++.. +| .+
T Consensus 296 ~v~ivD~~~g-~~vp~G~~GEl~vt~l------------~~~~~l---------~ry~tgD~~~~~~~~~g~~~d~~~~v 353 (369)
T 3hgu_A 296 TYDVVDSITA-QTVEYGERGNVIVTHL------------SPWAFY---------PRVAERDTAIRLPGVSGFAGDRLADI 353 (369)
T ss_dssp EEEEECTTTC-SBCCTTCEEEEEEEEE------------ETTEEE---------EEEEEEEEEEEECCSTTCSSCEEEEE
T ss_pred EEEEECCCCC-cCCCCCCceEEEEEEc------------Cccccc---------ccccCCceEEEecCCCCCcCcccccc
Confidence 9999998555 4558999999999873 122221 358999999883 33 57
Q ss_pred EEEecCCCeEEECCe
Q 037878 907 FITGRIKDLIIVAGR 921 (2280)
Q Consensus 907 ~~~GR~dd~IKi~G~ 921 (2280)
..++|.|+++||.|.
T Consensus 354 ~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 354 EPLKISEGRKVIEGV 368 (369)
T ss_dssp EECC-----------
T ss_pred eeccccCCCceeeec
Confidence 788999999999884
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=240.51 Aligned_cols=376 Identities=22% Similarity=0.374 Sum_probs=215.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCC-CCceEEEecCCCCCceEEEEeecCccceeeeecccceEEecCCCCceeecccc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLG-YRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVA 97 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G-~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (2280)
++++||+|||||++||+||++|+++| + +|+|+||++++||+++|.+.+++.++.+....... .......+..++..
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~-~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~--~~~~~~l~~~~g~~ 80 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFH-DYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPS--YDTIQEIMDRTGDK 80 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEECSSSCSSTTCCCCEETTEECCSSCCCBCTT--CHHHHHHHHHHCCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEECCCCCCCcccccCCCCcccccCceeecCC--cHHHHHHHHHhCCc
Confidence 35679999999999999999999999 8 69999999999999999887654433332110000 00000000000000
Q ss_pred cc-------h--h-hhhccc-------------cccchhhhh--ccccch----hhHHHhhhhhhhHHHHHcCCCCcchh
Q 037878 98 DD-------Y--V-SVISLT-------------LELQDKAKE--SGRIGV----HAVSDLASDLTPTYLEDRGFKSVPKS 148 (2280)
Q Consensus 98 ~~-------~--~-~~~~~~-------------~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~ 148 (2280)
.. + . ...... +........ ...+.. ............+|+.+.+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 160 (424)
T 2b9w_A 81 VDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCEAARDL 160 (424)
T ss_dssp CCSCCCCEEEECTTSCEECGGGCTTHHHHHHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTTCGGGHHH
T ss_pred cccccccceeEcCCCCEeccccCcccchhHHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhCcHHHHHH
Confidence 00 0 0 000000 000000000 000000 00001112334567766655433222
Q ss_pred hhhhhhcccccccccccHHHHHHHHhhc-----cCCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEE
Q 037878 149 VAYGYTASGYGFVQDMPYAYIHEFTRTS-----MAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDV 223 (2280)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v 223 (2280)
.........++...+.+..+...++... ..+..+.+.+|++++++++++.++.+|++|++|++|+++++++ .|
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v--~v 238 (424)
T 2b9w_A 161 WINPFTAFGYGHFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATLEHPAERNVDITRITREDGKV--HI 238 (424)
T ss_dssp HTTTTCCCCCCCTTTSBHHHHHHHSCHHHHHHHHHTCCBCCTTCHHHHHHHHHHHSSSCCBCSCCEEEEECCTTCE--EE
T ss_pred HHHHHHhhccCChHhcCHHHHHHhhhHhhhhcccCCceEEeCChHHHHHHHHHHhhcceEEcCCEEEEEEEECCEE--EE
Confidence 1111222233445667776654443211 1123346899999999999999988899999999999888765 57
Q ss_pred EeCCCceEEEEeCEEEEcCCcccccccccCCCCChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCCceeE
Q 037878 224 KHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFY 303 (2280)
Q Consensus 224 ~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~ 303 (2280)
++.+| +++||+||+|+|.. .. +..++..+.++..+.++.+..+...+.....+ |...+
T Consensus 239 ~~~~g---~~~ad~Vv~a~~~~--------------~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 296 (424)
T 2b9w_A 239 HTTDW---DRESDVLVLTVPLE--------------KF--LDYSDADDDEREYFSKIIHQQYMVDACLVKEY---PTISG 296 (424)
T ss_dssp EESSC---EEEESEEEECSCHH--------------HH--TTSBCCCHHHHHHHTTCEEEEEEEEEEEESSC---CSSEE
T ss_pred EECCC---eEEcCEEEECCCHH--------------HH--hhccCCCHHHHHHHhcCCcceeEEEEEEeccC---Ccccc
Confidence 77778 48999999995544 22 11223334556667777777766555544444 32222
Q ss_pred EEecCCCCCCCCCCcceeEEee-cCC-CcEEEEecC---CCCCCChHHHHHHHHHHHHhhcCccceEEEeecCCCCcccc
Q 037878 304 YFGEYMDDPATIGHPVAMQKFF-ADT-DIFLFWSYG---NSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVN 378 (2280)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g---~~~~~s~~e~~~~i~~~L~~~~~~p~~~~~~~~~~~~p~~s 378 (2280)
+.+........+......... .++ .+...+..+ ...+.+++++++.++++|++++.+++.......+..+|+++
T Consensus 297 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~w~~~p~~~ 375 (424)
T 2b9w_A 297 -YVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHPVEKIIEEQTWYYFPHVS 375 (424)
T ss_dssp -ECGGGGSGGGTTSCCEEEECCTTCTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEECC
T ss_pred -cccCCCCCcCCCcceEEeeecCCCCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcCCcccccccccceeeeeccC
Confidence 333221111222222112112 222 233333222 12346788999999999999864433322222334588899
Q ss_pred hhhhcchhhHHHHHHhcCcCCceeccccccccccccCchhhHHhh
Q 037878 379 SKDMKDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSMALM 423 (2280)
Q Consensus 379 ~~~~~~g~~~~l~~~lqg~~~~~~~G~~~~~~~~~~~~~y~~~l~ 423 (2280)
++.++.|+++++ ..+|+.+++||||++++++++|+.....+...
T Consensus 376 ~~~~~~G~~~~~-~~~~~~~~l~~aG~~~~~g~~e~a~~Sg~~aA 419 (424)
T 2b9w_A 376 SEDYKAGWYEKV-EGMQGRRNTFYAGEIMSFGNFDEVCHYSKDLV 419 (424)
T ss_dssp HHHHHTTHHHHH-HHTTTGGGEEECSGGGSCSSHHHHHHHHHHHH
T ss_pred HHHHhccHHHHH-HHHhCCCCceEeccccccccHHHHHHHHHHHH
Confidence 999999999999 78999999999999999999888766665444
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=200.71 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=74.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||++|.|+..+ ...+.+.|||+++++.++.+..+... ......+++||++||||.+++|++|++||++|+||++|
T Consensus 125 ~~IG~~~~I~~~~--~I~~~~~ig~~~~i~~~~~i~~~~~~-~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~Igags 201 (273)
T 3fs8_A 125 VYIGNYVNIHSNV--FVGEKSIIKDFVWLFPHVVLTNDPTP-PSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGA 201 (273)
T ss_dssp CEECSSCEECTTC--EECTTCEECTTCEECTTCEECCCSSS-SCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred eEECCceEECCCC--EECCCceeCCceeecCceEecCCCCC-cccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCC
Confidence 5777777777663 22345667777777777766443322 22244679999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|+++ +|++++|.|+||..
T Consensus 202 vV~~d--vp~~~~~~G~PA~~ 220 (273)
T 3fs8_A 202 VVTKD--VPKETVVVGNPARE 220 (273)
T ss_dssp EECSC--BCTTEEEEETTEEE
T ss_pred EECcc--CCCCcEEEecCcEE
Confidence 99999 99999999999543
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=197.74 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=71.0
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|+..+ ...+.+.||++|.|+.++.+. +.++||++|+||++++|+++++||++|+||++|
T Consensus 104 ~~IG~~~~I~~~~--~I~~~~~IG~~~~i~~~~~i~-----------~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s 170 (259)
T 3hsq_A 104 TVIGNKNYFMGNS--HVGHDCILGNNNILTHGAVLA-----------GHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLA 170 (259)
T ss_dssp EEECSSCEECTTC--EECTTCEECSSCEECTTCEEC-----------TTCEECSSCEECSSEEECTTCEECTTCEECSSE
T ss_pred EEECCCcEEcCCc--EECCCcEECCccEEcCCceEC-----------CccEECCCcEEeCCCEECCCCEECCCCEECCCC
Confidence 4677777777653 223556666666666666663 678999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|+++ +|++++|.|+||..
T Consensus 171 ~V~~d--vp~~~~~~G~pa~~ 189 (259)
T 3hsq_A 171 KVVQD--VPPYSTVDGNPSTV 189 (259)
T ss_dssp EECSB--BCTTEEEETTTTEE
T ss_pred EEccc--CCCCcEEeccCcEE
Confidence 99999 99999999999643
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=200.09 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=80.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|.|+..+. ..+.++|||+|.|+.++.+. ++++||++|+||.+++|+++++||++++||++|
T Consensus 109 ~~IG~~~~I~~~~~--I~~~~~IG~~~~i~~~~~i~-----------~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s 175 (266)
T 3r0s_A 109 TRIGDNAFIMAYCH--IAHDCLLGNNIILANNATLA-----------GHVELGDFTVVGGLTPIHQFVKVGEGCMIAGAS 175 (266)
T ss_dssp EEECTTCEECTTCE--ECTTCEECSSCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred EEECCCceeCCcce--EccccccCCCeEECCCceec-----------CCeEECCCcEEccCCEECCCcEECCCCEEccCC
Confidence 46777777776532 23456666666666666663 678999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCcee------eecccchhhHHHHHhHHHHHHHHH
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVM------IKNTMHALDDRIEEMDMKYKKIVG 1699 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~------~~~~~~~~~~~le~~~p~~~~~v~ 1699 (2280)
+|+++ +|++++|.|+||... ++|. ...+.++.++..|+.+.+
T Consensus 176 ~V~~d--vp~~~~~~G~Pa~~~~~n~~g~~r~--~~~~~~~~l~~~~~~l~~ 223 (266)
T 3r0s_A 176 ALSQD--IVPFCLAEGNRASIRSLNLVGIRRR--FDKDEVDRLSRAFKTLFR 223 (266)
T ss_dssp BBCSC--BCTTEEEEEBTEEEEEECHHHHHHH--SCHHHHHHHHHHHHHHHS
T ss_pred eEecc--cCCCeEEeccCcEEeecchhheeec--CCHHHHHHHHHHHHHHHc
Confidence 99999 999999999996431 1222 233444555666666544
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=203.72 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=71.8
Q ss_pred CeeCCCceeccCCcccC--CcceEECCCcEeCCCcEE------eecccCCC-ceEeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1574 AKIGRYCSIRAINPVSC--PQQVTLGAGVHLGDFSRI------IPGFYSSI-GFIFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~--~~~~~iG~~~~i~~~~~i------~~~~~~~~-~~~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
+.||++|+|+.++.+.. .+.+.||+++.|++++.| +.+...+. ....++++||++|+||++++|.+|++||
T Consensus 201 v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig 280 (341)
T 3eh0_A 201 VIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEIC 280 (341)
T ss_dssp EEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEEC
T ss_pred EEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEEC
Confidence 56777777776655432 234555555444444443 32222222 2345789999999999999999999999
Q ss_pred CCcEEccCccccCCCccC-CCcEEecCCCc
Q 037878 1645 RDVILGALSVAPMHSVLQ-RGGIYIGSQSP 1673 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v~-~~~~~~G~Pa~ 1673 (2280)
++++|+++|+|+++ +| +++.|.|+||.
T Consensus 281 ~~~vv~a~s~V~~~--v~~~~~~~~G~Pa~ 308 (341)
T 3eh0_A 281 DKVTVTGMGMVMRP--ITEPGVYSSGIPLQ 308 (341)
T ss_dssp SSEEECTTCEECSC--BCSCEEEECCCCCE
T ss_pred CCCEEeeCCEECCC--cCCCCeEEEecCch
Confidence 99999999999999 98 99999999953
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-17 Score=194.46 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=73.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|+..+ ...+.+.||++|+|+.++.+. ++++||++|+||++++|+++++||++|+||++|
T Consensus 105 ~~IG~~~~I~~~~--~I~~~~~IG~~~~I~~~~~i~-----------~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s 171 (270)
T 1j2z_A 105 TLIGDKNLLMAYV--HVAHDCVIGSHCILANGVTLA-----------GHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKS 171 (270)
T ss_dssp EEECSSCEECTTC--EECTTCEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEECCCcEECccc--ccCCCcEECCCcEEcCCcccc-----------CccEECCCeEEecCCEECCCcEeCCceEEecCc
Confidence 5788888888763 234567777777777777764 678999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCcee
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVM 1675 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~ 1675 (2280)
+|++| +|++++|.|+||...
T Consensus 172 ~V~~d--vp~~~~~~G~pa~~~ 191 (270)
T 1j2z_A 172 ALGKD--VPPYCTVEGNRAFIR 191 (270)
T ss_dssp EECSB--BCTTEEEETTBTEEE
T ss_pred Eeccc--CCCCeEEecCCcEEe
Confidence 99999 999999999996443
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=199.43 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=50.2
Q ss_pred eeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCce
Q 037878 1620 FGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1620 ~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
.++++|||+|+||.+++|++|++||++|+||++|+|++| +|+++++.|+||..
T Consensus 166 ~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~d--vp~~~~~~G~Pa~~ 218 (305)
T 3t57_A 166 AGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQD--VPKYMMVAGERAEL 218 (305)
T ss_dssp CTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETTBTEE
T ss_pred CCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEccc--CCCCeEEecCCcEE
Confidence 478999999999999999999999999999999999999 99999999999643
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=206.34 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=70.2
Q ss_pred CeeCCCceeccCCcccC--CcceEECCCcEeCCCcEEe------ecccCCC-ceEeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1574 AKIGRYCSIRAINPVSC--PQQVTLGAGVHLGDFSRII------PGFYSSI-GFIFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~--~~~~~iG~~~~i~~~~~i~------~~~~~~~-~~~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
+.||++|+|+.++.+.. .+.+.||+++.|+.++.|. .+..... ....++++||++|+||++++|.+|++||
T Consensus 223 v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig 302 (372)
T 3pmo_A 223 VTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEIC 302 (372)
T ss_dssp EEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEEC
T ss_pred eEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEEC
Confidence 45666666666554432 2445555555444444442 2222122 2245789999999999999999999999
Q ss_pred CCcEEccCccccCCCcc-CCCcEEecCCCc
Q 037878 1645 RDVILGALSVAPMHSVL-QRGGIYIGSQSP 1673 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v-~~~~~~~G~Pa~ 1673 (2280)
++++||++|+|+++ + |+++.|.|+||.
T Consensus 303 ~~~vI~a~s~V~k~--v~~~~~~~~G~Pa~ 330 (372)
T 3pmo_A 303 DNVFVTGMTMVTRS--ITEPGSYSSGTAMQ 330 (372)
T ss_dssp SSEEECTTCEECSC--BCSCEEECCSCCCC
T ss_pred CCCEEeeCCEEccC--cCCCCcEEEeCchH
Confidence 99999999999999 9 999999999964
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=211.10 Aligned_cols=247 Identities=15% Similarity=0.156 Sum_probs=142.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec-Cccceeeeecccce-----EEecC-C----
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE-EAGAELEEMDSHKL-----ALIDG-S---- 87 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~-~~g~~~~~~~~~~~-----~~~~~-~---- 87 (2280)
++++||+|||||++||+||++|+++|+ +|+|+|+++++||+++|.+.+ ++.++.+....... .+.+. .
T Consensus 2 ~~~~~vvIIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 80 (520)
T 1s3e_A 2 SNKCDVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETY 80 (520)
T ss_dssp -CBCSEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEE
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcce
Confidence 345799999999999999999999998 699999999999999998874 43333322211100 00000 0
Q ss_pred ----CC-ce-eecccccchhhhhccccccchhhhhcccc-----------------chhhHHHhhhhhhhHHHHHcCCCC
Q 037878 88 ----TG-EF-QDIKVADDYVSVISLTLELQDKAKESGRI-----------------GVHAVSDLASDLTPTYLEDRGFKS 144 (2280)
Q Consensus 88 ----~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~ 144 (2280)
.. .+ ...+....+...+...... .......++ .......+......+|+.+...+.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (520)
T 1s3e_A 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNP-ITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTE 159 (520)
T ss_dssp ECCCSSEEEEEETTEEEEECSSSCCCCSH-HHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSH
T ss_pred ecccCCceEEEECCEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCH
Confidence 00 00 0000000000000000000 000000000 000001122233345555544333
Q ss_pred cchhhhhhhhc-ccccccccccHHHHHHHHhh----------ccCCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEE
Q 037878 145 VPKSVAYGYTA-SGYGFVQDMPYAYIHEFTRT----------SMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIR 213 (2280)
Q Consensus 145 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~ 213 (2280)
........+.. .......+.+..+...++.. ......+.++||++.+++++++.+|.+|++|++|++|+
T Consensus 160 ~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~ 239 (520)
T 1s3e_A 160 SAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYID 239 (520)
T ss_dssp HHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGGEESSCCEEEEE
T ss_pred HHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHcCCcEEcCCeeEEEE
Confidence 21111111111 01123344555554443322 12345678999999999999999999999999999999
Q ss_pred EcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCChhhHhhhccCCCCh
Q 037878 214 RDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDE 271 (2280)
Q Consensus 214 ~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~~~l~~ 271 (2280)
.+++++ .+++.+| ++++||+||+|+|+.+...+.|.|+.+..+...+..+.++.
T Consensus 240 ~~~~~v--~v~~~~g--~~~~ad~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~~~~ 293 (520)
T 1s3e_A 240 QTRENV--LVETLNH--EMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGS 293 (520)
T ss_dssp CSSSSE--EEEETTS--CEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCBCC
T ss_pred ECCCeE--EEEECCC--eEEEeCEEEECCCHHHHcceeeCCCCCHHHHHHHHhCCCcc
Confidence 888765 5777788 47899999999999999889999999888777776555543
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=195.70 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=68.7
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|.|+.++.+ .+.+.||++|.|+.++.+. ++++||++|+||.+++|.++++||++++||++|
T Consensus 126 ~~IG~~~~I~~~~~I--~~~~~IG~~v~i~~~~~i~-----------~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s 192 (283)
T 4eqy_A 126 TTLGDDNWIMAYVHI--GHDCRVGSHVVLSSNAQMA-----------GHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGAS 192 (283)
T ss_dssp EEECSSCEECTTCEE--CTTCEECSSCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred eEECCCcEECceeEE--cCCcEECCCcEECCCceEc-----------CCcEECCCeEEecCCEEcCCeEECCCcEECCCC
Confidence 456666666665322 2445666666666666553 679999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|+++ +|++++|.|+||..
T Consensus 193 ~V~~d--vp~~~~~~G~pa~~ 211 (283)
T 4eqy_A 193 ALVQD--IPPFVIAAGNKAEP 211 (283)
T ss_dssp EECSB--BCTTEEEETBTTEE
T ss_pred eEecc--cCCCcEEeccCcEE
Confidence 99999 99999999999643
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=200.15 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=72.9
Q ss_pred CeeCCCceeccCCcccCC--cceEECCCcEeCCCcEE------eecccCCC-ceEeeCeEECCCcEEccCCeeCCCcEeC
Q 037878 1574 AKIGRYCSIRAINPVSCP--QQVTLGAGVHLGDFSRI------IPGFYSSI-GFIFGKVEVQDNSVIGSQSLVLPNSVVS 1644 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~--~~~~iG~~~~i~~~~~i------~~~~~~~~-~~~~~~~~IG~~~~iG~~~~v~~g~~ig 1644 (2280)
+.||++|+|+.++.+... +.+.||+++.|++++.| +.+...+. ....+.++||++|+||.+++|.+|++||
T Consensus 206 v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig 285 (357)
T 4e79_A 206 VLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIA 285 (357)
T ss_dssp EEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEEC
T ss_pred EEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEEC
Confidence 578888888776655422 45566655544444444 33322222 2355679999999999999999999999
Q ss_pred CCcEEccCccccCCCcc-CCCcEEecCCC
Q 037878 1645 RDVILGALSVAPMHSVL-QRGGIYIGSQS 1672 (2280)
Q Consensus 1645 ~~~~vg~~s~v~~~~~v-~~~~~~~G~Pa 1672 (2280)
++++|+++|+|+++ + |+++.|.|+||
T Consensus 286 ~~~vv~g~s~V~~~--v~~~~~~~~G~Pa 312 (357)
T 4e79_A 286 DNVTLTGMSMVTKN--ISEAGTYSSGTGL 312 (357)
T ss_dssp SSEEECTTCEECSC--BCSCEEEECSCCC
T ss_pred CCCEEeecCEEcCc--cCCCCcEEEeCch
Confidence 99999999999999 9 99999999995
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=191.41 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=69.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|+.++. ..+.++||+++.|+.++.+. ++++||++|+||++++|++|++||++|+||++|
T Consensus 109 ~~IG~~~~Ig~~~~--I~~~~~Ig~~~~i~~~~~i~-----------~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s 175 (262)
T 2qia_A 109 TKVGSDNLLMINAH--IAHDCTVGNRCILANNATLA-----------GHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCS 175 (262)
T ss_dssp EEECSSCEECTTCE--ECTTCEECSSCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred CEECCCcEEeeeeE--ECCCCEECCCeEECCccccc-----------CCcEECCCcEEccCCEECCCCEECCCCEEccCC
Confidence 56777777766532 23456666666666666653 678999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|+++ +|++++|.|+||..
T Consensus 176 ~V~~~--v~~~~~~~G~pa~~ 194 (262)
T 2qia_A 176 GVAQD--VPPYVIAQGNHATP 194 (262)
T ss_dssp EECSB--BCTTEEEEEBTEEE
T ss_pred EECCc--CCCCeEEeccCceE
Confidence 99999 99999999999643
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=204.01 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=50.0
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
..+.++||++|+||+++.|.++++||++|+||++|+|+++ +|++++|.|+||.
T Consensus 283 v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~--v~~~~~~~G~pa~ 335 (374)
T 2iu8_A 283 IAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS--ITSPGIYGGAPAR 335 (374)
T ss_dssp ECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSC--BCSCEEEEETTEE
T ss_pred cCCCcEECCCeEEecCcEECCCcccCCCcEEccCceeecc--cCCCcEEeCCCCc
Confidence 4477999999999999999999999999999999999999 9999999999953
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=190.62 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=67.6
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||+++.|+..+.+ .+.+.|||+|.|+.++.+. ++++||++|+||.+++|.++++||++++||++|
T Consensus 111 ~~IG~~~~I~~~~~I--~~~~~Ig~~~~i~~~~~i~-----------~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~s 177 (265)
T 4e6u_A 111 TKIGSHNLLMVNTHI--AHDCIVGDHNIFANNVGVA-----------GHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGAS 177 (265)
T ss_dssp EEECSSCEECTTCEE--CTTCEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred eEEccCcEEeeeeEE--cccEEECCCcEEcCCcEEC-----------CCcEECCCeEEcCCCEECCCcEECCCCEEcCCC
Confidence 456666666655322 3445555555555555553 679999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCc
Q 037878 1654 VAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
+|+++ +|++++|.|+||.
T Consensus 178 vV~~d--vp~~~~~~G~pa~ 195 (265)
T 4e6u_A 178 LILKD--VPAYVMASGNPAH 195 (265)
T ss_dssp EECSB--BCTTEEEEETTEE
T ss_pred EEccc--CCCCeEEEccCCE
Confidence 99999 9999999999964
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=205.67 Aligned_cols=209 Identities=15% Similarity=0.192 Sum_probs=122.4
Q ss_pred CeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEe-CCCceEEEEeCEEEEcCCcccccccccCCCCC
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKH-SNGECEVMEFDKIIISGAFPVKNGKFYRSPTS 257 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t-~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~ 257 (2280)
..++.++||++.|++++++.+|++|++|++|++|+.+++++.|..++ .+| ++++||+||+|+|.....
T Consensus 228 ~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g--~~~~ad~vV~a~~~~~~~--------- 296 (478)
T 2ivd_A 228 GALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRR--AELSVAQVVLAAPAHATA--------- 296 (478)
T ss_dssp CCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEE--EEEECSEEEECSCHHHHH---------
T ss_pred ccEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEecCCeEEEEEeecCCC--ceEEcCEEEECCCHHHHH---------
Confidence 57889999999999999999988999999999999888876444322 456 578999999996655332
Q ss_pred hhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC--cccCCceeEEEecCCCCCCCCCCcceeEEe--ecCCCcE--
Q 037878 258 KPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG--LEHLPVGFYYFGEYMDDPATIGHPVAMQKF--FADTDIF-- 331 (2280)
Q Consensus 258 ~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~--l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 331 (2280)
.+.. ++.......+.++.+.......+..+. ++ .+.+++++.+..++.......+....+ ..+.+..
T Consensus 297 -----~ll~-~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l 369 (478)
T 2ivd_A 297 -----KLLR-PLDDALAALVAGIAYAPIAVVHLGFDAGTLP-APDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLY 369 (478)
T ss_dssp -----HHHT-TTCHHHHHHHHTCCBCCEEEEEEEECTTSSC-CCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEE
T ss_pred -----HHhh-ccCHHHHHHHhcCCCCcEEEEEEEEccccCC-CCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEE
Confidence 2211 233333444555555555554444432 11 113455554332211111111100000 0122222
Q ss_pred EEEecCCC----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCCCCcccchhhhcchhhHHHHHHhcCcCCceecc
Q 037878 332 LFWSYGNS----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVG 404 (2280)
Q Consensus 332 ~~~~~g~~----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~~~G 404 (2280)
..+..+.. .+.+++++.+.+++.|+++.+ .|....+.+|...+|.+++..... ..++...+...+++|++|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~--~~~~~~~~~~~~~l~~aG 447 (478)
T 2ivd_A 370 SCMVGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLER--VAAIDAALQRLPGLHLIG 447 (478)
T ss_dssp EEEEECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHH--HHHHHHHHHTSTTEEECS
T ss_pred EEEeCCcCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHH--HHHHHHHHhhCCCEEEEc
Confidence 22222222 246889999999999999732 355566778877778888776431 233322232257899999
Q ss_pred ccc
Q 037878 405 GLM 407 (2280)
Q Consensus 405 ~~~ 407 (2280)
.++
T Consensus 448 ~~~ 450 (478)
T 2ivd_A 448 NAY 450 (478)
T ss_dssp TTT
T ss_pred cCC
Confidence 885
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=200.66 Aligned_cols=207 Identities=15% Similarity=0.223 Sum_probs=126.0
Q ss_pred CeEEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCC
Q 037878 179 GKIRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTS 257 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~ 257 (2280)
+.++.+++|++.+++++++.++ ++|++|++|++|+++++++ .|++.+| ++++||+||+|+|..+...+.+.|+
T Consensus 225 ~~~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~--~v~~~~g--~~~~ad~vi~a~p~~~~~~l~~~~~-- 298 (470)
T 3i6d_A 225 GQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCY--SLELDNG--VTLDADSVIVTAPHKAAAGMLSELP-- 298 (470)
T ss_dssp --EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEECSSSE--EEEESSS--CEEEESEEEECSCHHHHHHHTTTST--
T ss_pred ceEEEeCChHHHHHHHHHHhcCCCEEEeCCceEEEEEcCCeE--EEEECCC--CEEECCEEEECCCHHHHHHHcCCch--
Confidence 4677899999999999999986 6899999999999988865 6777888 4789999999977775444332221
Q ss_pred hhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC--cccCCceeEEEecCCCCCCCCCCcceeEEe--ecCCCcE-E
Q 037878 258 KPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG--LEHLPVGFYYFGEYMDDPATIGHPVAMQKF--FADTDIF-L 332 (2280)
Q Consensus 258 ~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~--l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~ 332 (2280)
....+..+.+.......+..+. ++....+++++.+..+.....+..+....+ ..+.+.. +
T Consensus 299 ---------------~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l 363 (470)
T 3i6d_A 299 ---------------AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLL 363 (470)
T ss_dssp ---------------THHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEE
T ss_pred ---------------hhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEE
Confidence 1223344555555554444332 112234566666554322111111111001 1122222 2
Q ss_pred EEecCCC-----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCCCCcccchhhhcchhhHHHHHHh-cCcCCceec
Q 037878 333 FWSYGNS-----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYEL-QGQRNTYYV 403 (2280)
Q Consensus 333 ~~~~g~~-----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~l-qg~~~~~~~ 403 (2280)
..+++.. .+++++++.+.++++|+++.+ .|......+|....|++++..... ..++...+ +...++|++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~--~~~~~~~l~~~~~~l~~a 441 (470)
T 3i6d_A 364 RAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQR--IKELREALASAYPGVYMT 441 (470)
T ss_dssp EEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHH--HHHHHHHHHHHSTTEEEC
T ss_pred EEEECCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHH--HHHHHHHHHhhCCCEEEE
Confidence 2222332 257899999999999999842 366677888887788887776531 22222223 234689999
Q ss_pred ccccc
Q 037878 404 GGLMA 408 (2280)
Q Consensus 404 G~~~~ 408 (2280)
|.++.
T Consensus 442 G~~~~ 446 (470)
T 3i6d_A 442 GASFE 446 (470)
T ss_dssp STTTS
T ss_pred eecCC
Confidence 98653
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=207.08 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=75.3
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
..||+++.+++.+.+. .++||++|.|+.++.+.+.. +..-.+++||++||||++++|++|++||+||+||++|
T Consensus 356 ~~i~~~~~i~~~~~i~---~~~Ig~~~~ig~~~~i~~~~----~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igags 428 (459)
T 4fce_A 356 ARLGKGSKAGHLSYLG---DAEIGAGVNIGAGTITCNYD----GANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGT 428 (459)
T ss_dssp EEECTTCEEEEEEEEE---EEEECTTCEECTTCEEECBC----SSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTC
T ss_pred eEEcCCCEECCceEEC---CeEECCCCEECCCCEEeccc----cccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCC
Confidence 4566666665543332 37999999999999886432 2222468999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCceee
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVMI 1676 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~~ 1676 (2280)
+|+++ +|++++|.|+||.+..
T Consensus 429 vV~~~--v~~~~~~~G~p~~~~~ 449 (459)
T 4fce_A 429 TVTRD--VAENELVISRVKQVHI 449 (459)
T ss_dssp EECSC--BCTTCEECCCCCCCCC
T ss_pred EEccc--cCCCCEEEecccccch
Confidence 99999 9999999999964443
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-16 Score=202.13 Aligned_cols=207 Identities=16% Similarity=0.125 Sum_probs=127.8
Q ss_pred CeEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCC
Q 037878 179 GKIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSP 255 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~ 255 (2280)
...+.++||++.++++|++.+ |++|++|++|++|++++++. +.|+++++ +++||+||+|+|...
T Consensus 224 ~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~-~~v~~~~~---~~~ad~vv~a~p~~~--------- 290 (477)
T 3nks_A 224 WSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGR-WKVSLRDS---SLEADHVISAIPASV--------- 290 (477)
T ss_dssp CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGC-EEEECSSC---EEEESEEEECSCHHH---------
T ss_pred ccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCce-EEEEECCe---EEEcCEEEECCCHHH---------
Confidence 457889999999999998776 78999999999999887762 25566444 689999999965552
Q ss_pred CChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCC-ceeEEEecCCCCCCCCCCcceeEEeec---CCCcE
Q 037878 256 TSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLP-VGFYYFGEYMDDPATIGHPVAMQKFFA---DTDIF 331 (2280)
Q Consensus 256 ~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 331 (2280)
...+.. +..+.....+.++.+.......+..+. +..| .+++++.+..++....+..+....+.. .++..
T Consensus 291 -----~~~ll~-~~~~~~~~~l~~~~~~~~~~v~l~~~~-~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 363 (477)
T 3nks_A 291 -----LSELLP-AEAAPLARALSAITAVSVAVVNLQYQG-AHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGL 363 (477)
T ss_dssp -----HHHHSC-GGGHHHHHHHHTCCEEEEEEEEEEETT-CCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCE
T ss_pred -----HHHhcc-ccCHHHHHHHhcCCCCcEEEEEEEECC-CCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCce
Confidence 222211 111223334455555555444444332 1122 567777766544333332222222211 11222
Q ss_pred E-EEecCCC---------CCCChHHHHHHHHHHHHhhc---CccceEEEeecCCCCcccchhhhcchhhHHHHHHhcC-c
Q 037878 332 L-FWSYGNS---------VDITGPTVTEVAIKTVENMG---GVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQG-Q 397 (2280)
Q Consensus 332 ~-~~~~g~~---------~~~s~~e~~~~i~~~L~~~~---~~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg-~ 397 (2280)
. ..+.+.. .+++++++.+.++++|+++. ..|....+.+|...+|+|++...+. ..++...+.. .
T Consensus 364 ~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~--~~~~~~~l~~~~ 441 (477)
T 3nks_A 364 RVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQK--LESARQFLTAHR 441 (477)
T ss_dssp EEEEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHH--HHHHHHHHHHTT
T ss_pred EEEEEECCccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHH--HHHHHHHHHhcC
Confidence 2 2222321 24689999999999999963 3477788889999999999887642 3344222322 3
Q ss_pred CCceeccccc
Q 037878 398 RNTYYVGGLM 407 (2280)
Q Consensus 398 ~~~~~~G~~~ 407 (2280)
.+++++|.++
T Consensus 442 ~~l~l~G~~~ 451 (477)
T 3nks_A 442 LPLTLAGASY 451 (477)
T ss_dssp CSEEECSTTT
T ss_pred CCEEEEccCC
Confidence 5799999874
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=197.53 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=135.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeeccc--------------ceEEec
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSH--------------KLALID 85 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~--------------~~~~~~ 85 (2280)
.++||+|||||++||+||++|+++|+ +|+|+|+++++||++++.+.+++.++.+..... ...+..
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~ 82 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFER 82 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEEC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCccccc
Confidence 35799999999999999999999998 699999999999999998764432222211100 000000
Q ss_pred CCCCc-e-eec-ccccchhhhhcccccc------c------hhhhh-c--c-ccchhhHHHhhhhhhhHHHHHcCCCCcc
Q 037878 86 GSTGE-F-QDI-KVADDYVSVISLTLEL------Q------DKAKE-S--G-RIGVHAVSDLASDLTPTYLEDRGFKSVP 146 (2280)
Q Consensus 86 ~~~~~-~-~~~-~~~~~~~~~~~~~~~~------~------~~~~~-~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 146 (2280)
..... . ... +....+..... .... . ..... . . .........+......+|+.+...+...
T Consensus 83 ~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 161 (453)
T 2yg5_A 83 YREGESVYISSAGERTRYTGDSF-PTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEA 161 (453)
T ss_dssp CCCSEEEEECTTSCEEEECSSSC-SCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHHCSCHHH
T ss_pred ccCCCEEEEeCCCceeeccCCCC-CCChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHhhcCCHHH
Confidence 00000 0 000 00000000000 0000 0 00000 0 0 0000001112223344566555433322
Q ss_pred hhhhhhhhcccc-cccc-cccHHHHHHHHhhcc---------CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEc
Q 037878 147 KSVAYGYTASGY-GFVQ-DMPYAYIHEFTRTSM---------AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRD 215 (2280)
Q Consensus 147 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~ 215 (2280)
......+....+ .... +.+..+...++.... ....+.++||++.+++++++.+|.+|++|++|++|+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~ 241 (453)
T 2yg5_A 162 RDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWN 241 (453)
T ss_dssp HHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHHGGGEECSCCEEEEEEE
T ss_pred HHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhcCCcEEcCCceEEEEEe
Confidence 111111111111 1233 555555443332211 12357899999999999999999999999999999988
Q ss_pred CCc-cEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCChhhHhhhccC
Q 037878 216 STT-VGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVM 267 (2280)
Q Consensus 216 ~~~-v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~~ 267 (2280)
+++ + .|++ +| ++++||+||+|+|+.+...+.|.|+.+......+..+
T Consensus 242 ~~~~v--~v~~-~~--~~~~ad~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~ 289 (453)
T 2yg5_A 242 ESGAT--VLAD-GD--IRVEASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQ 289 (453)
T ss_dssp TTEEE--EEET-TT--EEEEEEEEEECSCGGGGGGSEEESCCCHHHHHHGGGE
T ss_pred CCceE--EEEE-CC--eEEEcCEEEEcCCHHHHhcCEeCCCCCHHHHHHHhcC
Confidence 886 5 5666 56 4789999999999999888888888877765555433
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=203.60 Aligned_cols=211 Identities=17% Similarity=0.209 Sum_probs=124.5
Q ss_pred eEEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCc------cEEEEEeCCCce-EEEEeCEEEEcCCcccccccc
Q 037878 180 KIRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTT------VGVDVKHSNGEC-EVMEFDKIIISGAFPVKNGKF 251 (2280)
Q Consensus 180 ~~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~------v~V~v~t~~G~~-~~i~aD~VI~A~p~~v~~~i~ 251 (2280)
..+.++||+++|+++|++.++ .+|++|++|++|+.++++ +.|.+.+.+|+. ++++||+||+|+|+.+...+.
T Consensus 234 ~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll 313 (504)
T 1sez_A 234 GSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMK 313 (504)
T ss_dssp SCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSE
T ss_pred ceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHh
Confidence 467899999999999999997 799999999999988776 666665555632 367999999998888665554
Q ss_pred cCC---CCChhhHhhhccCCCChhhHhhhccceeeeeEEEEEee--cCcccCCceeEEEecCCCCC---CCCCCcceeEE
Q 037878 252 YRS---PTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKI--TGLEHLPVGFYYFGEYMDDP---ATIGHPVAMQK 323 (2280)
Q Consensus 252 f~p---~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~--~~l~~~p~~~~~~~~~~~~~---~~~~~~~~~~~ 323 (2280)
+.+ +.++. .+..+.+.......+.. ..++....+++++.+..+.. ...+..+....
T Consensus 314 ~~~~~~~~~~~----------------~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~ 377 (504)
T 1sez_A 314 IAKRGNPFLLN----------------FIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMM 377 (504)
T ss_dssp EESSSSBCCCT----------------TSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHH
T ss_pred hcccCCcccHH----------------HHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccc
Confidence 321 11111 12223333322222222 21222234466665544321 11111111111
Q ss_pred ee--cCCCcEEEEec--CCC----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCCCCcccchhhhcchhhHHHHH
Q 037878 324 FF--ADTDIFLFWSY--GNS----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEY 392 (2280)
Q Consensus 324 ~~--~~~~~~~~~~~--g~~----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~ 392 (2280)
+. .+.+...+..| +.. ..++++++.+.++++|+++.+ .|......+|...+|++++...+ ....+..
T Consensus 378 ~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~--~~~~~~~ 455 (504)
T 1sez_A 378 FPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDS--VLDAIDK 455 (504)
T ss_dssp CGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHH--HHHHHHH
T ss_pred cCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHH--HHHHHHH
Confidence 11 12233322222 221 346899999999999999843 36667777777777887776432 1233322
Q ss_pred HhcCcCCceecccccc
Q 037878 393 ELQGQRNTYYVGGLMA 408 (2280)
Q Consensus 393 ~lqg~~~~~~~G~~~~ 408 (2280)
.++...++|++|.++.
T Consensus 456 ~~~~~~~l~~aG~~~~ 471 (504)
T 1sez_A 456 MEKNLPGLFYAGNHRG 471 (504)
T ss_dssp HHHHSTTEEECCSSSS
T ss_pred HHHhCCCEEEEeecCC
Confidence 2445678999998764
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-15 Score=194.66 Aligned_cols=358 Identities=12% Similarity=0.093 Sum_probs=183.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeecccc-----e----------EEecC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHK-----L----------ALIDG 86 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~-----~----------~~~~~ 86 (2280)
+||+|||||++||+||++|+++|+ +|+|+|+++++|||++|.+.+++.++.+....+. . .+...
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~~~ 118 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGF-KTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPS 118 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEEES
T ss_pred CCEEEECCcHHHHHHHHHHHHCCC-CEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcceeecc
Confidence 799999999999999999999998 6999999999999999998765444433321110 0 00000
Q ss_pred -----CCCce-eec--ccccchhh-hhccccc-cchhhhh-----cc--------ccchhhHHHhhhhhhhHHHHHcC--
Q 037878 87 -----STGEF-QDI--KVADDYVS-VISLTLE-LQDKAKE-----SG--------RIGVHAVSDLASDLTPTYLEDRG-- 141 (2280)
Q Consensus 87 -----~~~~~-~~~--~~~~~~~~-~~~~~~~-~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~l~~~~-- 141 (2280)
....+ ... +....+.. .....+. ....... .. .........+......+|+.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 198 (495)
T 2vvm_A 119 FNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDE 198 (495)
T ss_dssp CCCSSSCCEEEEESSTTCCEEECHHHHHHHHHHHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHHHHHHHHGGG
T ss_pred cccCCCceEEEecCCCCceeecCHHHHHHHHHHHHHHHHccchhhhhhcCCCCCCcccCcchhhhhhhhHHHHHHHhhcc
Confidence 00000 000 00000000 0000000 0000000 00 00000111222233345555443
Q ss_pred CCCcchhhhhhhhc-ccccccccccHHHHHHHHhhc--------cCCeEEEEcCCHHHHHHHHHhHC---C-CceEeCcc
Q 037878 142 FKSVPKSVAYGYTA-SGYGFVQDMPYAYIHEFTRTS--------MAGKIRRFKGGYTSLWQKLSKYL---P-TEVHCNSE 208 (2280)
Q Consensus 142 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~gG~~~l~~~la~~l---g-~~I~l~t~ 208 (2280)
++.........+.. .......+.+...+..++... .....+.++||++.+++++++.+ | ++|++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~ 278 (495)
T 2vvm_A 199 LSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCP 278 (495)
T ss_dssp CCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCC
T ss_pred CCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCE
Confidence 33211111111111 111223444444443333211 12345679999999999999876 3 56999999
Q ss_pred eEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCChhhHhhhccCCCChhhHhhhccceeeeeEEE
Q 037878 209 VLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTT 288 (2280)
Q Consensus 209 V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~ 288 (2280)
|++|+.+++++ .|++.+| ++++||+||+|+|+.+...+.|.|+.++.....+..+.+....|.
T Consensus 279 V~~i~~~~~~v--~v~~~~g--~~~~ad~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~kv------------- 341 (495)
T 2vvm_A 279 VRSVVNERDAA--RVTARDG--REFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKV------------- 341 (495)
T ss_dssp EEEEEECSSSE--EEEETTC--CEEEEEEEEECCCGGGGGGSEEESCCCHHHHHHHHHCCCCCCEEE-------------
T ss_pred EEEEEEcCCEE--EEEECCC--CEEEcCEEEECCCHHHHhheeeCCCCCHHHHHHHHhcCCCceeEE-------------
Confidence 99999887765 6677788 478999999999999998899999988877766654444332221
Q ss_pred EEeecCcccCCceeEEEecCCCCCCCCCCcceeEEeecCCC-cEEEEecCCCCCCChHHHHHHHHHHHHhhcCc---cce
Q 037878 289 VLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTD-IFLFWSYGNSVDITGPTVTEVAIKTVENMGGV---IEN 364 (2280)
Q Consensus 289 i~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~s~~e~~~~i~~~L~~~~~~---p~~ 364 (2280)
.+..+. +.. .++...... + ..+. ........+.+ ..+..+.+....+++++..+.+++.|+++.+. |..
T Consensus 342 ~l~~~~-~~~-~~~~g~~~~-~--~~~~--~~~~~~~~~~~~~vl~~~~~~~~~~~~~e~~~~~~~~L~~~~~~~~~~~~ 414 (495)
T 2vvm_A 342 HAEVDN-KDM-RSWTGIAYP-F--NKLC--YAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKR 414 (495)
T ss_dssp EEEESC-GGG-GGEEEEECS-S--CSSC--EEEEEEECTTSCEEEEEEECSTTCCCTTTCHHHHHHHHHTTSTTSCCEEE
T ss_pred EEEECC-ccC-CCceeEecC-C--CCcE--EEecCCCCCCCCeEEEEEeCccccCCCHHHHHHHHHHHHHhcCCCCCceE
Confidence 111111 000 112221111 1 0111 11111111111 12222223322356677788899999998543 344
Q ss_pred EEEeecC------CCCcccchhhhcchhhHHHHHHhcCcCCceecccccc
Q 037878 365 VVLQRRF------KYFPHVNSKDMKDGFYDRLEYELQGQRNTYYVGGLMA 408 (2280)
Q Consensus 365 ~~~~~~~------~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~~~G~~~~ 408 (2280)
....+|. ..++.+.+....+ +...+ .+...++|++|.++.
T Consensus 415 ~~~~~W~~dp~~~g~y~~~~~g~~~~-~~~~l---~~p~~~l~fAGe~t~ 460 (495)
T 2vvm_A 415 LVFHNWVKDEFAKGAWFFSRPGMVSE-CLQGL---REKHGGVVFANSDWA 460 (495)
T ss_dssp EEECCTTTCTTTSSSSCCCCTTHHHH-HHHHH---HCCBTTEEECCGGGC
T ss_pred EEEeEcCCCCCCCCCccCcCCCcchh-hHHHH---hCcCCCEEEechhhh
Confidence 4444553 1233444444321 12222 355678999998765
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=171.04 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=63.4
Q ss_pred eEECCCcEeCCCcEEeecccCC----CceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEec
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSS----IGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIG 1669 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~----~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G 1669 (2280)
++||++++|++++.+.+..... .....++++||++|+||.+++|++|++||++++||++|+|+++ +|++++|.|
T Consensus 70 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~--vp~~~v~~G 147 (192)
T 3mqg_A 70 VFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKD--VPDFALVVG 147 (192)
T ss_dssp EEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEET
T ss_pred CEECCCCEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcc--cCCCCEEEc
Confidence 5666666666666654322211 1124478999999999999999999999999999999999999 999999999
Q ss_pred CCCcee
Q 037878 1670 SQSPVM 1675 (2280)
Q Consensus 1670 ~Pa~~~ 1675 (2280)
+||+.+
T Consensus 148 ~PAk~i 153 (192)
T 3mqg_A 148 VPARQI 153 (192)
T ss_dssp TTTEEE
T ss_pred cCCEEE
Confidence 996544
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=201.71 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=53.3
Q ss_pred CeEEEEcCCHHHHHHHHHhH---CCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcc
Q 037878 179 GKIRRFKGGYTSLWQKLSKY---LPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFP 245 (2280)
Q Consensus 179 ~~~~~~~gG~~~l~~~la~~---lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~ 245 (2280)
.+.+.++||++.|+++|++. .|++|++|++|++|..+++++ +.|++.+| ++++||.||+++++.
T Consensus 211 ~G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~-~gV~~~~g--~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 211 WGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKI-EAVHLEDG--RRFLTQAVASNADVV 277 (501)
T ss_dssp CCEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEE-EEEEETTS--CEEECSCEEECCC--
T ss_pred CCeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEeeCCeE-EEEEecCC--cEEEcCEEEECCCHH
Confidence 45667999999999999864 589999999999999998876 46888899 589999999985444
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=199.22 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=114.9
Q ss_pred eEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCC
Q 037878 180 KIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPT 256 (2280)
Q Consensus 180 ~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~ 256 (2280)
..+.++||++.+++++++.+ |++|++|++|++|..++++ +++.+| ++++||+||+|+|+..
T Consensus 213 ~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~----v~~~~G--~~~~ad~vI~t~P~~~---------- 276 (513)
T 4gde_A 213 FRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT----VTLQDG--TTIGYKKLVSTMAVDF---------- 276 (513)
T ss_dssp EEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE----EEETTS--CEEEEEEEEECSCHHH----------
T ss_pred eeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCE----EEEcCC--CEEECCEEEECCCHHH----------
Confidence 34566899999999999887 5689999999999987763 335678 5899999999976652
Q ss_pred ChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC--cccCCceeEEEecCCCCCC------------CCCC----c
Q 037878 257 SKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG--LEHLPVGFYYFGEYMDDPA------------TIGH----P 318 (2280)
Q Consensus 257 ~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~--l~~~p~~~~~~~~~~~~~~------------~~~~----~ 318 (2280)
...+ +. +.........+.|.......+.... .........++.+..+-+. ..+. .
T Consensus 277 ----l~~~--l~-~~~~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~ 349 (513)
T 4gde_A 277 ----LAEA--MN-DQELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAAL 349 (513)
T ss_dssp ----HHHH--TT-CHHHHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCE
T ss_pred ----HHHh--cC-chhhHhhhhcccCCceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceE
Confidence 2222 11 1222334445555554444333221 1112222333333222110 0000 0
Q ss_pred ceeEEe----e----cCCC-cEEEE---ecCCCCCCChHHHHHHHHHHHHhhcCc-----cceEEEeecCCCCcccchhh
Q 037878 319 VAMQKF----F----ADTD-IFLFW---SYGNSVDITGPTVTEVAIKTVENMGGV-----IENVVLQRRFKYFPHVNSKD 381 (2280)
Q Consensus 319 ~~~~~~----~----~~~~-~~~~~---~~g~~~~~s~~e~~~~i~~~L~~~~~~-----p~~~~~~~~~~~~p~~s~~~ 381 (2280)
.....+ . .... ++.+. .......++++++.+.++++|.+++.. +....+.++...+|+++...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~ 429 (513)
T 4gde_A 350 PTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLER 429 (513)
T ss_dssp ECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTH
T ss_pred EEEEeccCCCcccccCCcceEEEEEecccchhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhH
Confidence 000000 0 0000 11111 011225689999999999999998533 33456667777899998877
Q ss_pred hcchhhHHHHHHhcCcCCceeccc
Q 037878 382 MKDGFYDRLEYELQGQRNTYYVGG 405 (2280)
Q Consensus 382 ~~~g~~~~l~~~lqg~~~~~~~G~ 405 (2280)
.+. .+++...++. .++|++|=
T Consensus 430 ~~~--~~~~~~~l~~-~~l~~~GR 450 (513)
T 4gde_A 430 EGT--LTQILPKLQD-KDIWSRGR 450 (513)
T ss_dssp HHH--HHHHHHHHHH-TTEEECST
T ss_pred HHH--HHHHHHHHhh-cCcEEecC
Confidence 653 5666555654 68999983
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-15 Score=193.40 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=125.6
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPT 256 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~ 256 (2280)
.+.++.+++|++.+++++++.++ .+|++|++|++|+++++++ .|++.+| +++||+||+|+|..+...+.+.++.
T Consensus 225 ~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~--~v~~~~g---~~~ad~vV~a~p~~~~~~ll~~~~~ 299 (475)
T 3lov_A 225 TGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISREDGRY--RLKTDHG---PEYADYVLLTIPHPQVVQLLPDAHL 299 (475)
T ss_dssp CCSEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEEETTEE--EEECTTC---CEEESEEEECSCHHHHHHHCTTSCC
T ss_pred CCcEEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEEeCCEE--EEEECCC---eEECCEEEECCCHHHHHHHcCccCH
Confidence 45678999999999999999997 6899999999999988865 6778888 5899999999777654444333211
Q ss_pred ChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC-cccCCceeEEEecCCCCCCCCCCcceeEEee--cCCCcEEE
Q 037878 257 SKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG-LEHLPVGFYYFGEYMDDPATIGHPVAMQKFF--ADTDIFLF 333 (2280)
Q Consensus 257 ~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~-l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 333 (2280)
..+.++.+.......+..+. ++....+++++.+..+.....+..+....+. .+......
T Consensus 300 ------------------~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~ 361 (475)
T 3lov_A 300 ------------------PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLR 361 (475)
T ss_dssp ------------------HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEE
T ss_pred ------------------HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEE
Confidence 22334444444444433322 2111245666665543222111111111111 11111111
Q ss_pred EecCCC-----CCCChHHHHHHHHHHHHhhcC---ccceEEEeecCCCCcccchhhhcchhhHHHHHHh-cCcCCceecc
Q 037878 334 WSYGNS-----VDITGPTVTEVAIKTVENMGG---VIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYEL-QGQRNTYYVG 404 (2280)
Q Consensus 334 ~~~g~~-----~~~s~~e~~~~i~~~L~~~~~---~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~l-qg~~~~~~~G 404 (2280)
.+.+.. .+++++++++.+++.|+++.+ .|....+.+|....|++++..... ..++...+ +...++|++|
T Consensus 362 ~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~--~~~~~~~l~~~~~~l~~aG 439 (475)
T 3lov_A 362 AFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADR--IQRVREEVLAQYPGIYLAG 439 (475)
T ss_dssp EEECBTTBCGGGGSCHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHH--HHHHHHHHHHHSTTEEECS
T ss_pred EEeCCCCCCcccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHH--HHHHHHHHHhhCCCEEEEc
Confidence 222322 347899999999999999832 367777888887788888776431 22231222 2346899999
Q ss_pred cccc
Q 037878 405 GLMA 408 (2280)
Q Consensus 405 ~~~~ 408 (2280)
.++.
T Consensus 440 ~~~~ 443 (475)
T 3lov_A 440 LAYD 443 (475)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 7654
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=187.89 Aligned_cols=349 Identities=14% Similarity=0.086 Sum_probs=164.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeecccceEEecC-CCC----ceeeccc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALIDG-STG----EFQDIKV 96 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 96 (2280)
+||+|||||++||+||++|+++|+ +|+|+||++++||++++.+.+++.++.++.. +... ... .+..++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~-----~~~~~~~~~~~~l~~~lg~ 74 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGH-EIIVLEKSAMIGGRFTNLPYKGFQLSTGALH-----MIPHGEDGPLAHLLRILGA 74 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSSEEEETTEEEESSSCS-----EETTTTSSHHHHHHHHHTC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCCCceeEEeccCCEEEecCCeE-----EEccCCChHHHHHHHHhCC
Confidence 589999999999999999999998 6999999999999999988776554433210 0000 000 0000000
Q ss_pred ------------------ccchhhhhccccccchhhhhccccchhhHH-Hh--hhhhhhHHHHHcCCCCcc-hhhhhhhh
Q 037878 97 ------------------ADDYVSVISLTLELQDKAKESGRIGVHAVS-DL--ASDLTPTYLEDRGFKSVP-KSVAYGYT 154 (2280)
Q Consensus 97 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~l~-~~~~~~~~ 154 (2280)
..++..... .+. ................ .. ......+++.+.++..-. ......+.
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~ 152 (421)
T 3nrn_A 75 KVEIVNSNPKGKILWEGKIFHYRESWK-FLS-VKEKAKALKLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFA 152 (421)
T ss_dssp CCCEEECSSSCEEEETTEEEEGGGGGG-GCC---------CCHHHHHTTCCCCCCSBHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cceEEECCCCeEEEECCEEEEcCCchh-hCC-HhHHHHHHHHHHHHHhccCCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 000000000 000 0000000000000000 00 002223455444332211 00010000
Q ss_pred cc-cccccccccHHHHHHHHhh-ccCCeEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEEeCCCc
Q 037878 155 AS-GYGFVQDMPYAYIHEFTRT-SMAGKIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKHSNGE 229 (2280)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~ 229 (2280)
.. ........+.......+.. ...+.++.+++|++.+.++|++.+ |++|++|++|++|..+++++ +.+ +|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v---V~~-~g- 227 (421)
T 3nrn_A 153 GWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKKV---YTR-DN- 227 (421)
T ss_dssp HHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE---EET-TC-
T ss_pred HHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE---EEe-CC-
Confidence 00 1122334444333222211 112345678999999999998754 78999999999999888765 443 56
Q ss_pred eEEEEeCEEEEcCCcccccccccCCCCChhhHhhhcc-CCCChhhHhhhccceeeeeEEEEEeecCcccCCceeEEEecC
Q 037878 230 CEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQV-MDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEY 308 (2280)
Q Consensus 230 ~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~-~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~~~~ 308 (2280)
++++||+||+|++.. ....+.. -.+.......+.++.+...+...+..+.-+ ++....++.+.
T Consensus 228 -~~~~ad~Vv~a~~~~--------------~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~-~~~~~~~~~~~ 291 (421)
T 3nrn_A 228 -EEYSFDVAISNVGVR--------------ETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEP-RIGNTIVFTPG 291 (421)
T ss_dssp -CEEECSEEEECSCHH--------------HHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSC-SSCSSEEECTT
T ss_pred -cEEEeCEEEECCCHH--------------HHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCc-ccCCeEEEcCC
Confidence 478999999995444 3323322 112222222334444443222222222211 22222233322
Q ss_pred CCCCCCCCCcceeEEeecCCCcEEEEecCCCCCCChHHHHHHHHHHHHhhcCccceEEEeecCCCCcccchhhhcchhhH
Q 037878 309 MDDPATIGHPVAMQKFFADTDIFLFWSYGNSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVNSKDMKDGFYD 388 (2280)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~e~~~~i~~~L~~~~~~p~~~~~~~~~~~~p~~s~~~~~~g~~~ 388 (2280)
.+ ......+........+.+...++.+......++++..+.++++|+++-+..+...+.++...+|++....-.
T Consensus 292 ~~-~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~~p~~~~~~~~----- 365 (421)
T 3nrn_A 292 LM-INGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEELLEIFPEGEPLLAQVYRDGNPVNRTRAGL----- 365 (421)
T ss_dssp SS-SCEEECGGGTCGGGSCTTEEEEEEEEECTTCCHHHHHHHHHHHHHHHCTTCEEEEEEEC------------------
T ss_pred cc-eeeEeccCCCCCCcCCCCceEEEEEEeeccccHHHHHHHHHHHHHHHcCCCeEEEeeeccCCCCcccccCCC-----
Confidence 21 000000111111112334333333322122334566899999999986666667777777777777332211
Q ss_pred HHHHHhcCcCCceecccccc
Q 037878 389 RLEYELQGQRNTYYVGGLMA 408 (2280)
Q Consensus 389 ~l~~~lqg~~~~~~~G~~~~ 408 (2280)
++ . ... +++|+||.+..
T Consensus 366 ~~-~-~~~-~gl~laGd~~~ 382 (421)
T 3nrn_A 366 HI-E-WPL-NEVLVVGDGYR 382 (421)
T ss_dssp CC-C-CCC-SSEEECSTTCC
T ss_pred CC-C-CCC-CcEEEECCccc
Confidence 23 2 344 88999998764
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=197.00 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=75.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.++....+ ..++||++|+||.++.+.++.. ...+.++||++|+||++++|.+|++||+||+||++|
T Consensus 353 ~~i~~~~~i~~~~~~---~~~~Ig~~v~Ig~~~~i~~~~~----~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s 425 (456)
T 2v0h_A 353 STVGKGSKVNHLTYV---GDSEIGSNCNIGAGVITCNYDG----ANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGT 425 (456)
T ss_dssp CEECTTCEEEEEEEE---ESEEECTTCEECTTCEEEECSS----SSCCCEEECSSCEECTTCEEEESEEECTTCEECTTC
T ss_pred cEECCCCEeccceee---cCcEECCCcEECCceEEecccc----ccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCC
Confidence 456666666554322 2489999999999999865321 222478999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCceee
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVMI 1676 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~~ 1676 (2280)
+|+++ +|++++|.|+||....
T Consensus 426 ~v~~~--v~~~~~~~G~pa~~~~ 446 (456)
T 2v0h_A 426 TITRD--VGENELVITRVAQRHI 446 (456)
T ss_dssp EECSC--BCTTCEECCCCCCCCC
T ss_pred EECCC--cCCCCEEEccCceehh
Confidence 99999 9999999999965443
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=194.15 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=77.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.|+..+.+ ..++||++|.||.++.+.++.. ....+++||++|+||++++|.+|++||++++||++|
T Consensus 361 ~~Ig~~~~i~~~~~i---~~~~Ig~~~~Ig~~~~i~~~~~----~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s 433 (468)
T 1hm9_A 361 SSIGENTKAGHLTYI---GNCEVGSNVNFGAGTITVNYDG----KNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGS 433 (468)
T ss_dssp CEECTTCEEEEEEEE---ESEEECTTCEECTTCEEECBCS----SCBCCEEECTTCEECTTCEEESSCEECTTCEECTTC
T ss_pred eEEcCCcEeCCceEE---ccccccCCcEECCCcEEecCcC----ccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCC
Confidence 568888888765433 2489999999999998865422 222479999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|+++ +|++++|.|+||..
T Consensus 434 ~v~~~--v~~~~~~~G~pa~~ 452 (468)
T 1hm9_A 434 TITKD--VPADAIAIGRGRQI 452 (468)
T ss_dssp EECSC--BCTTCEECCSCCCC
T ss_pred EECCC--CCCCCEEEcCccee
Confidence 99999 99999999999644
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=191.97 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=75.7
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCc--eEEEEeCEEEEcCCcccccccccCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGE--CEVMEFDKIIISGAFPVKNGKFYRSP 255 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~--~~~i~aD~VI~A~p~~v~~~i~f~p~ 255 (2280)
...++.++||+++|+++|++.++.+|++|++|++|+.+++++.|. +.+|+ .++++||+||+|+|+.+...+.|.|+
T Consensus 230 ~~~~~~~~gG~~~l~~~l~~~l~~~i~~~~~V~~I~~~~~~v~v~--~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~ 307 (498)
T 2iid_A 230 EKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVV--YETLSKETPSVTADYVIVCTTSRAVRLIKFNPP 307 (498)
T ss_dssp CCCEEEETTCTTHHHHHHHHHTGGGEESSCEEEEEEECSSCEEEE--EECSSSCCCEEEESEEEECSCHHHHTTSEEESC
T ss_pred CcceEEeCCcHHHHHHHHHHhcccccccCCEEEEEEECCCeEEEE--EecCCcccceEEeCEEEECCChHHHhheecCCC
Confidence 456778999999999999999977999999999999988876444 43442 12589999999999999889999999
Q ss_pred CChhhHhhhccCCCChh
Q 037878 256 TSKPTESETQVMDMDEL 272 (2280)
Q Consensus 256 ~~~~~~~~l~~~~l~~~ 272 (2280)
+++.+...+..+.++..
T Consensus 308 Lp~~~~~ai~~l~~~~~ 324 (498)
T 2iid_A 308 LLPKKAHALRSVHYRSG 324 (498)
T ss_dssp CCHHHHHHHHHCCEECE
T ss_pred CCHHHHHHHHhCCCcce
Confidence 98888777765555443
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=191.45 Aligned_cols=359 Identities=12% Similarity=0.086 Sum_probs=169.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCccceeeeecccceEEecCCCCceeecccccchh
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVADDYV 101 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (2280)
+||+|||||++||+||++|+++|+ +|+||||++++||+++++..+++.++.++...............+..++......
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 79 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGH-EVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIV 79 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-ceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEE
Confidence 589999999999999999999998 7999999999999999987766544433211000000000000000000000000
Q ss_pred ----hhhc----------------cccccchhhh---hccccchhhH----HHhhhhhhhHHHHHcCCCCcchhhhhhhh
Q 037878 102 ----SVIS----------------LTLELQDKAK---ESGRIGVHAV----SDLASDLTPTYLEDRGFKSVPKSVAYGYT 154 (2280)
Q Consensus 102 ----~~~~----------------~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 154 (2280)
.... .......... ...+...... .........+|+.+..-..........+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 159 (425)
T 3ka7_A 80 RSEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKIALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFC 159 (425)
T ss_dssp ECCCCEEEEESSTTCCSSTTCEEEEEGGGGGGGSCHHHHHHHHHHHHHTTTSCCCSSBHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ecCCceEEeecCCCcccccccccceehhhhhhhCCHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHhcCCHHHHHHHHHHH
Confidence 0000 0000000000 0000000000 00001122344443311111111110111
Q ss_pred cc-cccccccccHHHHHHHHhh-ccCCeEEEEcCCHHHHHHHHHhHC---CCceEeCcceEEEEEcCCccEEEEEeCCCc
Q 037878 155 AS-GYGFVQDMPYAYIHEFTRT-SMAGKIRRFKGGYTSLWQKLSKYL---PTEVHCNSEVLAIRRDSTTVGVDVKHSNGE 229 (2280)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gG~~~l~~~la~~l---g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~ 229 (2280)
.. ........+.......+.. ...+..+.++||++.+.++|++.+ |++|++|++|++|..+++++ ..|+++ |
T Consensus 160 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~-~gv~~~-g- 236 (425)
T 3ka7_A 160 GWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIENGKA-AGIIAD-D- 236 (425)
T ss_dssp HHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEE-EEEEET-T-
T ss_pred HHHhCCCcccchHHHHHHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEE-EEEEEC-C-
Confidence 00 1122334444333222221 122455678999999999998654 88999999999999988865 235554 6
Q ss_pred eEEEEeCEEEEcCCcccccccccCCCCChhhHhhhcc-C-CC--ChhhHhhhccceeeeeEEEEEeecCcccCCceeEEE
Q 037878 230 CEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQV-M-DM--DELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYF 305 (2280)
Q Consensus 230 ~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~-~-~l--~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~ 305 (2280)
++++||+||+|+|.. ....+.. . .+ .......+.++.+.......+..+.-+ .+....++
T Consensus 237 -~~~~ad~VV~a~~~~--------------~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~-~~~~~~~~ 300 (425)
T 3ka7_A 237 -RIHDADLVISNLGHA--------------ATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPL-VGHTGVLL 300 (425)
T ss_dssp -EEEECSEEEECSCHH--------------HHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCS-SCSSSEEE
T ss_pred -EEEECCEEEECCCHH--------------HHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCc-cCcCEEEE
Confidence 579999999996554 2222211 1 01 121222223333333222222222211 11111112
Q ss_pred ecCCCCCCCCC--CcceeEEeecCCCcEEEEec--CCCCCC-ChHHHHHHHHHHHHhhc--CccceEEEeecCCCCcccc
Q 037878 306 GEYMDDPATIG--HPVAMQKFFADTDIFLFWSY--GNSVDI-TGPTVTEVAIKTVENMG--GVIENVVLQRRFKYFPHVN 378 (2280)
Q Consensus 306 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--g~~~~~-s~~e~~~~i~~~L~~~~--~~p~~~~~~~~~~~~p~~s 378 (2280)
..... ...+ .+.....-..+.+..+++.+ ....+. .+++..+.++++|+++- ..++...+.+|....|++.
T Consensus 301 ~~~~~--~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~v~~~~~~~P~~~ 378 (425)
T 3ka7_A 301 TPYTR--RINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKEIFPGKRYEVLLIQSYHDEWPVNR 378 (425)
T ss_dssp CCSSS--SEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHHHSTTCCEEEEEEEEEBTTBCSBS
T ss_pred CCChh--hcceEEeccCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHHhCCCCceEEEEEEEECCCccccc
Confidence 11111 0100 00001111123333332222 111111 12455789999999985 3467788888888889888
Q ss_pred hhhhcchhhHHHHHHhcCcCCceecccccc
Q 037878 379 SKDMKDGFYDRLEYELQGQRNTYYVGGLMA 408 (2280)
Q Consensus 379 ~~~~~~g~~~~l~~~lqg~~~~~~~G~~~~ 408 (2280)
+..-. .. ...-+.+++|.||.++.
T Consensus 379 ~~~~~-----~~-~~~~p~~gL~laG~~~~ 402 (425)
T 3ka7_A 379 AASGT-----DP-GNETPFSGLYVVGDGAK 402 (425)
T ss_dssp SCTTC-----CC-CSBCSSBTEEECSTTSC
T ss_pred cccCC-----CC-CCCCCcCCeEEeCCccC
Confidence 76432 12 12334468999998753
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=189.61 Aligned_cols=88 Identities=24% Similarity=0.319 Sum_probs=72.7
Q ss_pred EEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEc-CCccEEEEEeCCCceEEEEeCEEEEcCCccccc-----------
Q 037878 182 RRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRD-STTVGVDVKHSNGECEVMEFDKIIISGAFPVKN----------- 248 (2280)
Q Consensus 182 ~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~-~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~----------- 248 (2280)
....+ ++.++++|++.++ .+|++|++|++|+.+ +++ +.|++.+| ++++||+||+|+|+.+.+
T Consensus 196 ~~~~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~--v~v~~~~g--~~~~ad~VI~t~p~~~l~~~~~~~~~~~~ 270 (516)
T 1rsg_A 196 AFALN-YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKN--VTVNCEDG--TVYNADYVIITVPQSVLNLSVQPEKNLRG 270 (516)
T ss_dssp EEESC-HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSC--EEEEETTS--CEEEEEEEEECCCHHHHHGGGSSCSCSTT
T ss_pred hhhhC-HHHHHHHHHHhCCCCEEEECCEEEEEEEcCCCe--EEEEECCC--cEEECCEEEECCCHHHhhhcccccccccc
Confidence 34566 9999999999885 579999999999986 444 47778888 478999999999999875
Q ss_pred ccccCCCCChhhHhhhccCCCChhhH
Q 037878 249 GKFYRSPTSKPTESETQVMDMDELEK 274 (2280)
Q Consensus 249 ~i~f~p~~~~~~~~~l~~~~l~~~~k 274 (2280)
.+.|.|++|+.+...+..+.++...|
T Consensus 271 ~i~f~P~Lp~~~~~ai~~~~~~~~~K 296 (516)
T 1rsg_A 271 RIEFQPPLKPVIQDAFDKIHFGALGK 296 (516)
T ss_dssp CCEEESCCCHHHHHHTTSSCCCCCEE
T ss_pred ceEecCCCCHHHHHHHHhCCCCcceE
Confidence 48999999999988887777765554
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-14 Score=182.16 Aligned_cols=206 Identities=18% Similarity=0.163 Sum_probs=128.0
Q ss_pred EEEEcCCHHHHHHHHHhHCCC-ceEeC--cceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCC
Q 037878 181 IRRFKGGYTSLWQKLSKYLPT-EVHCN--SEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTS 257 (2280)
Q Consensus 181 ~~~~~gG~~~l~~~la~~lg~-~I~l~--t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~ 257 (2280)
.|++.||++++++++++.++. +|++| ++|++|+++++++ . ..+| ++++||+||+|+|..
T Consensus 208 ~yp~~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~v--~--~~~G--~~~~ad~VI~a~p~~------------ 269 (484)
T 4dsg_A 208 RFPQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTI--T--FSNG--EVVSYDYLISTVPFD------------ 269 (484)
T ss_dssp EEESSSCTHHHHHHHHHHSCGGGEEECGGGCEEEEETTTTEE--E--ETTS--CEEECSEEEECSCHH------------
T ss_pred EeecCCCHHHHHHHHHhhhhhCeEEECCCceeEEEEecCCEE--E--ECCC--CEEECCEEEECCCHH------------
Confidence 445679999999999999975 89999 5699999887744 3 3577 478999999996554
Q ss_pred hhhHhhhcc---CCCChhhHhhhccceeeeeEEEEEeecC--cccCCceeEEEecCCCCCCCCCCcce-eEEeecCCCcE
Q 037878 258 KPTESETQV---MDMDELEKELFSKVQTIDYYTTVLKITG--LEHLPVGFYYFGEYMDDPATIGHPVA-MQKFFADTDIF 331 (2280)
Q Consensus 258 ~~~~~~l~~---~~l~~~~k~~~~~~~~~~~~~~i~~~~~--l~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 331 (2280)
....+.. .++.+..+..+..+.+.......+..+. ...++.++.++.+..+.+......+. ......+.+.+
T Consensus 270 --~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~ 347 (484)
T 4dsg_A 270 --NLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHW 347 (484)
T ss_dssp --HHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEE
T ss_pred --HHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeE
Confidence 3333221 1234444555666666655444433322 11234567777666543211111111 11111233433
Q ss_pred EE---EecCCCCCCChHHHHHHHHHHHHhhcCc-cc----eEEEeecCCCCcccchhhhcchhhHHHHHHhcCcCCceec
Q 037878 332 LF---WSYGNSVDITGPTVTEVAIKTVENMGGV-IE----NVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTYYV 403 (2280)
Q Consensus 332 ~~---~~~g~~~~~s~~e~~~~i~~~L~~~~~~-p~----~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~~~ 403 (2280)
.+ ...+...+.+|+++.+.++++|.+++.. ++ ...+.++.+++|++++.+.+. ++++...++.. +++++
T Consensus 348 ~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~--~~~~~~~l~~~-~l~~~ 424 (484)
T 4dsg_A 348 SLMLEVSESKYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNL--LEKAQPELMSR-CIYSR 424 (484)
T ss_dssp EEEEEEEEBTTBCCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHH--HHHHHHHHHHT-TEEEC
T ss_pred EEEEEEecCcCCcCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHH--HHHHHHHHHhC-CcEee
Confidence 22 2223335679999999999999998632 22 235778899999999987653 66665556655 89999
Q ss_pred cccccc
Q 037878 404 GGLMAF 409 (2280)
Q Consensus 404 G~~~~~ 409 (2280)
|.+-.+
T Consensus 425 Gr~g~~ 430 (484)
T 4dsg_A 425 GRFGAW 430 (484)
T ss_dssp STTTTC
T ss_pred cCCccc
Confidence 975333
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-14 Score=181.31 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=71.9
Q ss_pred EEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCChhhHh
Q 037878 183 RFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTES 262 (2280)
Q Consensus 183 ~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~ 262 (2280)
.+.+|+..+++++++.+| +|++|++|++|+.+++++ .|++.+| ++++||+||+|+|+++.+.+.|.|+++..+..
T Consensus 201 ~~~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v--~v~~~~g--~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~ 275 (431)
T 3k7m_X 201 VFSNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVV--NVTVKDG--HAFQAHSVIVATPMNTWRRIVFTPALPERRRS 275 (431)
T ss_dssp EETTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSE--EEEETTS--CCEEEEEEEECSCGGGGGGSEEESCCCHHHHH
T ss_pred hcCCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeE--EEEECCC--CEEEeCEEEEecCcchHhheeeCCCCCHHHHH
Confidence 789999999999999999 999999999999888765 5777788 46899999999999999999999999988887
Q ss_pred hhccCCC
Q 037878 263 ETQVMDM 269 (2280)
Q Consensus 263 ~l~~~~l 269 (2280)
.+....+
T Consensus 276 ~~~~~~~ 282 (431)
T 3k7m_X 276 VIEEGHG 282 (431)
T ss_dssp HHHHCCC
T ss_pred HHHhCCC
Confidence 7755443
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.6e-14 Score=158.33 Aligned_cols=101 Identities=23% Similarity=0.372 Sum_probs=85.1
Q ss_pred ceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1593 ~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
.+.||++|.|++++.| ..++||++|+||.+++|.+|++||++|+||++|+|+++..+|++++|.|+||
T Consensus 83 ~~~Ig~~~~Ig~~~~i------------~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa 150 (187)
T 3r3r_A 83 PLIIGEDVTVGHKVML------------HGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPV 150 (187)
T ss_dssp CEEECSSCEECTTCEE------------ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTT
T ss_pred CeEECCCCEECCCCEE------------eCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCC
Confidence 4788888889888888 5689999999999999999999999999999999996666999999999994
Q ss_pred ceeeecccchhhHHHHHhHHHHHHHHHhhhhhhh
Q 037878 1673 PVMIKNTMHALDDRIEEMDMKYKKIVGNLSANLA 1706 (2280)
Q Consensus 1673 ~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~~ 1706 (2280)
+..++......+.++.....|.++.+++...+.
T Consensus 151 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (187)
T 3r3r_A 151 -KQIRPLSDAERSGLQYSANNYVKWKDDYLSQDN 183 (187)
T ss_dssp -EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -eEcCcCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 555665555566677777888888888776664
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=159.67 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=65.2
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
+.||+++.|++++.+ ..++||++|+||+++.|++|++||+||+||++|+|+++..+|+++++.|+|+.
T Consensus 86 ~~Ig~~~~i~~~~~i------------~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~ 153 (194)
T 3tv0_A 86 MIIGTNNVFEVGCYS------------QAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCL 153 (194)
T ss_dssp EEECSSCEECTTCEE------------CCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCC
T ss_pred eEECCcceEecceeE------------eeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcE
Confidence 677888888888877 56799999999999999999999999999999999999889999999999975
Q ss_pred eeeecccch----hhHHHHHhHHHHHHHHHhhhh
Q 037878 1674 VMIKNTMHA----LDDRIEEMDMKYKKIVGNLSA 1703 (2280)
Q Consensus 1674 ~~~~~~~~~----~~~~le~~~p~~~~~v~~l~~ 1703 (2280)
.+....... ..+.+++.-|.|.++.+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~l~k~~p~y~~l~k~~k~ 187 (194)
T 3tv0_A 154 RRVQTERPQPQTLQLDFLMKILPNYHHLKKTMKG 187 (194)
T ss_dssp EEEECCCCCC------------------------
T ss_pred EeecccCcccchHHHHHHHHHhHHHHHHHHHhhc
Confidence 443222111 112334445566655555543
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=159.23 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=85.3
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+.+.||++|.|+++|.| ..++||++|+||++++|.+|++||++|+||++|+|+++..+|+++++.|+|
T Consensus 86 ~~~~Ig~~~~Ig~~~~i------------~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~p 153 (189)
T 3r1w_A 86 YPLIIGDDVTIGHQAML------------HGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTP 153 (189)
T ss_dssp BCEEECSSEEECTTCEE------------ESCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTT
T ss_pred CCeEECCCCEECCCCEE------------eCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCc
Confidence 45888999999999988 457999999999999999999999999999999999766699999999999
Q ss_pred CceeeecccchhhHHHHHhHHHHHHHHHhhhhh
Q 037878 1672 SPVMIKNTMHALDDRIEEMDMKYKKIVGNLSAN 1704 (2280)
Q Consensus 1672 a~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~ 1704 (2280)
++.+++......+.++...+.|.++.+++..+
T Consensus 154 -a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (189)
T 3r1w_A 154 -AKKVRPITEKERSFFTYGAGNYVRLKDKHLAE 185 (189)
T ss_dssp -TEEEEECCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -cccccCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556666666677777788888888877643
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=191.21 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=112.5
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEe-C-CCceEEEEeCEEEEcCCcccccc----cc
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKH-S-NGECEVMEFDKIIISGAFPVKNG----KF 251 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t-~-~G~~~~i~aD~VI~A~p~~v~~~----i~ 251 (2280)
.+.++.++||++.|+++|++.+ +|++|++|++|+.+++++.|+..+ . ++..++++||+||+|+|+++++. +.
T Consensus 561 ~g~~~~~~gG~~~L~~aLa~~l--~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~ 638 (852)
T 2xag_A 561 TGSHLTVRNGYSCVPVALAEGL--DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQ 638 (852)
T ss_dssp BSCCEEETTCTTHHHHHHTTTC--CEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSE
T ss_pred CCceEEecCcHHHHHHHHHhCC--CEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccc
Confidence 3567899999999999999876 799999999999998877555443 1 12126799999999999999765 78
Q ss_pred cCCCCChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCCceeEEEecCCCCCCCCCCcceeEEeecCCCcE
Q 037878 252 YRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTDIF 331 (2280)
Q Consensus 252 f~p~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (2280)
|.|++|..+...+..+.++...|..+ .|... -++.....+++..+..+.....+..+. .. ..+..
T Consensus 639 F~P~LP~~k~~AI~~l~~g~v~KV~L-~F~~~----------fW~~~~~~fG~l~~~~~~~~~l~~~~~---~~-~~pvL 703 (852)
T 2xag_A 639 FVPPLPEWKTSAVQRMGFGNLNKVVL-CFDRV----------FWDPSVNLFGHVGSTTASRGELFLFWN---LY-KAPIL 703 (852)
T ss_dssp EESCCCHHHHHHHHHSEECCCEEEEE-ECSSC----------CSCTTCCEEEECCSSSTTTTTTCEEEE---CS-SSSEE
T ss_pred cCCCCCHHHHHHHHcCCccceEEEEE-EcCCc----------ccCCCCCeeeeeccccCCCCceEEEec---CC-CCCEE
Confidence 99999998887776665554444222 11111 111112334544443332222221111 11 22333
Q ss_pred EEEecCCC----CCCChHHHHHHHHHHHHhhcC-----ccceEEEeecC
Q 037878 332 LFWSYGNS----VDITGPTVTEVAIKTVENMGG-----VIENVVLQRRF 371 (2280)
Q Consensus 332 ~~~~~g~~----~~~s~~e~~~~i~~~L~~~~~-----~p~~~~~~~~~ 371 (2280)
..++.|.. ..++++++++.+++.|+++.+ .|....+.+|.
T Consensus 704 l~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~ 752 (852)
T 2xag_A 704 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWR 752 (852)
T ss_dssp EEEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTT
T ss_pred EEEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecC
Confidence 33333322 457999999999999999742 25566666665
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-13 Score=177.16 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCC-CceEeCcceEEEEEcCCccEEEEEeCCC-ceEEEEeCEEEEcCCccccccccc
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLP-TEVHCNSEVLAIRRDSTTVGVDVKHSNG-ECEVMEFDKIIISGAFPVKNGKFY 252 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg-~~I~l~t~V~~I~~~~~~v~V~v~t~~G-~~~~i~aD~VI~A~p~~v~~~i~f 252 (2280)
...+++++||++.|+++|++.++ .+|++|++|++|+++++++. |++.+| +.++++||+||+|+|+.+...+.+
T Consensus 228 ~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~--v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~ 302 (489)
T 2jae_A 228 AMMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVT--VEYTAGGSKKSITADYAICTIPPHLVGRLQN 302 (489)
T ss_dssp SSSEEEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTEEE--EEEEETTEEEEEEESEEEECSCHHHHTTSEE
T ss_pred CccEEeecCCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEE--EEEecCCeEEEEECCEEEECCCHHHHHhCcc
Confidence 35688999999999999999998 88999999999999888764 444343 224789999999988776665554
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=172.78 Aligned_cols=300 Identities=14% Similarity=0.060 Sum_probs=169.1
Q ss_pred CeEEEECccHHHHHHHHHHHh---CCCCceEEEecCCCCCceEEEEeecCccceeeeecccceEEecCCCCceeeccccc
Q 037878 22 TRIGIVGGGPSGLSTAYALAK---LGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHKLALIDGSTGEFQDIKVAD 98 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~---~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (2280)
+||+|||||++||+||+.|++ +|+ +|+||||++.+||++.+.+.+..... ..+.....+... .
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~-~V~v~Ek~~~~gg~~~~~~~~~~~~~----------~~d~g~~~~~~~---~ 67 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPL-YLAVWDKADDSGGRMTTACSPHNPQC----------TADLGAQYITCT---P 67 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCE-EEEEECSSSSSCGGGCEEECSSCTTC----------EEESSCCCEEEC---S
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCc-eEEEEECCCCCccceeeeecCCCCCc----------eEecCCceEEcC---c
Confidence 589999999999999999999 998 79999999999999887654221000 000000000000 0
Q ss_pred chhhhhccccccchhhhhccccchhhHHHhhhhhhhHHHHHcCCC-CcchhhhhhhhcccccccccccHHHHHHHHhhcc
Q 037878 99 DYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDRGFK-SVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSM 177 (2280)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (2280)
.+ ...+ ......+.. .+.. .... ..... ....
T Consensus 68 ~~------------------------~~~~-~~~~~~~~~-~g~~~~~~~------------~~~~~---------~~~~ 100 (342)
T 3qj4_A 68 HY------------------------AKKH-QRFYDELLA-YGVLRPLSS------------PIEGM---------VMKE 100 (342)
T ss_dssp SH------------------------HHHT-HHHHHHHHH-TTSCEECCS------------CEETC---------CC--
T ss_pred hH------------------------HHHH-HHHHHHHHh-CCCeecCch------------hhcce---------eccC
Confidence 00 0000 000011111 1110 0000 00000 0011
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccccccc--CCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFY--RSP 255 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f--~p~ 255 (2280)
....+...+|+..+.+++++.+|.+|++|++|++|++++++| .+++.+| ++++||+||+|+|.+....+.. .|+
T Consensus 101 ~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~--~v~~~~g--~~~~ad~vV~A~p~~~~~~ll~~~~~~ 176 (342)
T 3qj4_A 101 GDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKW--EVSKQTG--SPEQFDLIVLTMPVPEILQLQGDITTL 176 (342)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSE--EEEESSS--CCEEESEEEECSCHHHHTTCBSTHHHH
T ss_pred CccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEE--EEEECCC--CEEEcCEEEECCCHHHHHHHhcccccc
Confidence 234677899999999999998899999999999999988876 5667777 3579999999976553322211 011
Q ss_pred CChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecC-ccc-CCceeEEEecCCCCCCCCCCcce-eEEee-c-C-CC
Q 037878 256 TSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITG-LEH-LPVGFYYFGEYMDDPATIGHPVA-MQKFF-A-D-TD 329 (2280)
Q Consensus 256 ~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~-l~~-~p~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-~-~~ 329 (2280)
+.+.....+..+.+.......+..+. +.. .| ..+++.+... .+..... ..+.. . . .+
T Consensus 177 -------------l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~-~~g~~~~~~~---~~~~~~~~~~k~~r~~~~~~ 239 (342)
T 3qj4_A 177 -------------ISECQRQQLEAVSYSSRYALGLFYEAGTKIDVP-WAGQYITSNP---CIRFVSIDNKKRNIESSEIG 239 (342)
T ss_dssp -------------SCHHHHHHHHTCCBCCEEEEEEECSSCC--CCS-CSEEECSSCS---SEEEEEEHHHHTTCCCC-CC
T ss_pred -------------cCHHHHHHHhcCCccccEEEEEEECCCCccCCc-eeeEEccCCc---ceEEEEccccCCCCCCCCCC
Confidence 22233455666777766665655442 111 12 1233332111 0100000 00100 0 0 11
Q ss_pred -cEEEEecC----CCCCCChHHHHHHHHHHHHhhc---CccceEEEeecCCCCcccchhhhcchhhHHHHHHhcCcCCce
Q 037878 330 -IFLFWSYG----NSVDITGPTVTEVAIKTVENMG---GVIENVVLQRRFKYFPHVNSKDMKDGFYDRLEYELQGQRNTY 401 (2280)
Q Consensus 330 -~~~~~~~g----~~~~~s~~e~~~~i~~~L~~~~---~~p~~~~~~~~~~~~p~~s~~~~~~g~~~~l~~~lqg~~~~~ 401 (2280)
.+.....+ ...+.+++++.+.++++|+++. ..|....+.||.+.+|++...+- ...+ .+....+++
T Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~~----~~~~--~~~~~~~l~ 313 (342)
T 3qj4_A 240 PSLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANC----PGQM--TLHHKPFLA 313 (342)
T ss_dssp CEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSSS----CSCE--EEETTTEEE
T ss_pred ceEEEECCHHHHHHhhcCCHHHHHHHHHHHHHHhccCCCCCceeeeccccccccccccCCC----ccee--EecCCccEE
Confidence 22222111 1256889999999999999984 34888999999999998866221 1111 124557899
Q ss_pred eccccccc
Q 037878 402 YVGGLMAF 409 (2280)
Q Consensus 402 ~~G~~~~~ 409 (2280)
+||.++.-
T Consensus 314 laGd~~~g 321 (342)
T 3qj4_A 314 CGGDGFTQ 321 (342)
T ss_dssp ECSGGGSC
T ss_pred EEccccCC
Confidence 99998753
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-14 Score=190.29 Aligned_cols=177 Identities=15% Similarity=0.176 Sum_probs=111.1
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeC--CCceEEEEeCEEEEcCCcccccc----cc
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHS--NGECEVMEFDKIIISGAFPVKNG----KF 251 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~--~G~~~~i~aD~VI~A~p~~v~~~----i~ 251 (2280)
.+.++.++||++.|+++|++.+ +|++|++|++|+.+++++.|+..+. ++..++++||+||+|+|+++++. +.
T Consensus 390 ~g~~~~~~gG~~~l~~~La~~l--~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~ 467 (662)
T 2z3y_A 390 TGSHLTVRNGYSCVPVALAEGL--DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQ 467 (662)
T ss_dssp BSCCEEETTCTTHHHHHHTTTC--EEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSE
T ss_pred CCceeeecCcHHHHHHHHHhcC--ceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceE
Confidence 3567899999999999999865 8999999999999988775554431 12225799999999999999765 78
Q ss_pred cCCCCChhhHhhhccCCCChhhHhhhccceeeeeEEEEEeecCcccCCceeEEEecCCCCCCCCCCcceeEEeecCCCcE
Q 037878 252 YRSPTSKPTESETQVMDMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFADTDIF 331 (2280)
Q Consensus 252 f~p~~~~~~~~~l~~~~l~~~~k~~~~~~~~~~~~~~i~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (2280)
|.|++|+.+...+..+.++...|..+ .|+... ++.....+++..+..++..... ..... ...+..
T Consensus 468 f~P~LP~~k~~Ai~~l~~g~~~KV~l-~f~~~f----------W~~~~~~~G~l~~~~~~~~~~~---~~~~~-~~~~vL 532 (662)
T 2z3y_A 468 FVPPLPEWKTSAVQRMGFGNLNKVVL-CFDRVF----------WDPSVNLFGHVGSTTASRGELF---LFWNL-YKAPIL 532 (662)
T ss_dssp EESCCCHHHHHHHHHSEECCCEEEEE-ECSSCC----------SCTTCSEEEECCSSSTTTTEEE---EEECC-SSSSEE
T ss_pred EcCCCCHHHHHHHHhCCccceeEEEE-EcCccc----------ccCCCCceeeecCCCCCCCcee---EEEeC-CCCCEE
Confidence 99999998888876666555444222 111111 1111123444333222111100 00000 122333
Q ss_pred EEEecCCC----CCCChHHHHHHHHHHHHhhcC-----ccceEEEeecC
Q 037878 332 LFWSYGNS----VDITGPTVTEVAIKTVENMGG-----VIENVVLQRRF 371 (2280)
Q Consensus 332 ~~~~~g~~----~~~s~~e~~~~i~~~L~~~~~-----~p~~~~~~~~~ 371 (2280)
..++.|.. ..++++++++.+++.|+++.+ .|....+.+|.
T Consensus 533 ~~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~ 581 (662)
T 2z3y_A 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWR 581 (662)
T ss_dssp EEEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTT
T ss_pred EEEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEEC
Confidence 33333332 468999999999999999832 25556666664
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=156.85 Aligned_cols=95 Identities=15% Similarity=0.262 Sum_probs=78.5
Q ss_pred ceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1593 ~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
.+.||++|.|++++.| ..++||++|+||.+++|.+|++||++|+||++|+|.++..+|+++++.|+|
T Consensus 95 ~~~Ig~~~~Ig~~~~i------------~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~p- 161 (191)
T 3ixc_A 95 DTVIGKFVTIGHSCIL------------HACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRP- 161 (191)
T ss_dssp CEEECTTCEECTTCEE------------CSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETT-
T ss_pred CeEECCCCEECCCCEE------------ECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcC-
Confidence 4778888888888877 457999999999999999999999999999999999666699999999999
Q ss_pred ceeeecccchhhHHHHHhHHHHHHHHHh
Q 037878 1673 PVMIKNTMHALDDRIEEMDMKYKKIVGN 1700 (2280)
Q Consensus 1673 ~~~~~~~~~~~~~~le~~~p~~~~~v~~ 1700 (2280)
++.+|+........++.....|.++.+.
T Consensus 162 a~~i~~~~~~~~~~~~~~~~~~~~l~~~ 189 (191)
T 3ixc_A 162 AKFLRMMTEEEILYLQKSAENYIALSRG 189 (191)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceecccCCHHHHHHHHHHHHHHHHHHHh
Confidence 5566666655556666666666666554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=152.14 Aligned_cols=98 Identities=14% Similarity=0.245 Sum_probs=82.3
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+.+.||++|.|++++.| ..++||++|+||.+++|.+|++||++++||++|+|+++..+|+++++.|+|
T Consensus 72 ~~~~Ig~~~~Ig~~~~i------------~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~p 139 (173)
T 1xhd_A 72 YPLILEDDVTVGHQVIL------------HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRP 139 (173)
T ss_dssp CCEEECTTCEECTTCEE------------ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETT
T ss_pred CCeEECCCCEECCCCEE------------eCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCC
Confidence 45888999999999888 457999999999999999999999999999999999766699999999999
Q ss_pred CceeeecccchhhHHHHHhHHHHHHHHHhhh
Q 037878 1672 SPVMIKNTMHALDDRIEEMDMKYKKIVGNLS 1702 (2280)
Q Consensus 1672 a~~~~~~~~~~~~~~le~~~p~~~~~v~~l~ 1702 (2280)
++..++......+.+++....|.++.+.+.
T Consensus 140 -a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (173)
T 1xhd_A 140 -AKVIRELTAEDRKDMERIRTQYVEKGQYYK 169 (173)
T ss_dssp -EEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666566667777777777776653
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-14 Score=160.33 Aligned_cols=55 Identities=31% Similarity=0.529 Sum_probs=51.4
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCcee
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVM 1675 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~ 1675 (2280)
..++++||++|+||++++|++|++||++|+||++|+|+++ +|+++++.|+||..+
T Consensus 131 ~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~--v~~~~v~~G~Pa~~i 185 (205)
T 3vbi_A 131 KTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES--LDDWYIYVGVPVRKI 185 (205)
T ss_dssp EECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC--BCTTEEEETTTTEEE
T ss_pred ccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc--cCCCeEEEccCCEEe
Confidence 4688999999999999999999999999999999999999 999999999995444
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-13 Score=177.17 Aligned_cols=173 Identities=15% Similarity=0.252 Sum_probs=136.4
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCce----eecCEEECCCcEECCCCEECCCCEECCCCEE
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVL----SFQPIKIARKVSVGPYAVIQKGSVIGEEAEV 1392 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~----~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~i 1392 (2280)
.++||++|.|+.... ..+.+.||++|.|++++.+....+.++.. .+....||+++.||.++.+.||++|++++.|
T Consensus 283 dv~IG~dv~I~~~v~-i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~I 361 (501)
T 3st8_A 283 DVTIGRDTVIHPGTQ-LLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKL 361 (501)
T ss_dssp TCEECTTCEECSSEE-EETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEE
T ss_pred ceEECCcceecceee-ecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEcccccc
Confidence 578999999976544 34678899999999999998887766544 3445678999999999999999999999999
Q ss_pred CcCCccCCCCccccCCCceeeccCCCccccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCchhhHHH
Q 037878 1393 APLQKSEGGKPILKSTNANYVQKGGAVSKISTHRTQDEAIHQFIGIYIVSFLSTLSAAITYFLYIWLSQKPASPRHFAFL 1472 (2280)
Q Consensus 1393 g~~s~v~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1472 (2280)
|+.+.+..
T Consensus 362 G~~v~ik~------------------------------------------------------------------------ 369 (501)
T 3st8_A 362 GAFVEVKN------------------------------------------------------------------------ 369 (501)
T ss_dssp EETEEEES------------------------------------------------------------------------
T ss_pred CCeEEEcc------------------------------------------------------------------------
Confidence 98664321
Q ss_pred HhhccccchhHHHhhhhhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhHHHHHHHHHhhh
Q 037878 1473 CISGAFHWLPFTIIAYATMFASVPANPAYFAISTAVAYLFHGLVLSYLTCILTHFLAGKKEEKQTHLKAWLCHRITIACH 1552 (2280)
Q Consensus 1473 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~w~~~~~~~~~~ 1552 (2280)
T Consensus 370 -------------------------------------------------------------------------------- 369 (501)
T 3st8_A 370 -------------------------------------------------------------------------------- 369 (501)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhccCCchHHHHHHHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEc
Q 037878 1553 LRFAKLLSGTEAFCIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIG 1632 (2280)
Q Consensus 1553 ~~~~~~l~gt~~~~~~lR~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG 1632 (2280)
+.||+++.|+..+.+.+ +.||++|.||.+|.+.+.. +....+++|||+|+||
T Consensus 370 ---------------------s~Ig~gskI~~~~~i~d---~~Ig~~v~IG~g~i~~n~d----g~~~~~t~IGd~~~iG 421 (501)
T 3st8_A 370 ---------------------STIGTGTKVPHLTYVGD---ADIGEYSNIGASSVFVNYD----GTSKRRTTVGSHVRTG 421 (501)
T ss_dssp ---------------------CEECTTCEEEESCEEES---EEECSSCEECTTCEEECBC----SSSBCCEEECTTCEEC
T ss_pred ---------------------ceecCCcEEeccceecC---ceEcCCCEECCCEEEEccc----CCcccCCEECCCcEEC
Confidence 23555555544332322 7899999999999885432 2233568999999999
Q ss_pred cCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEe-cCCC
Q 037878 1633 SQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYI-GSQS 1672 (2280)
Q Consensus 1633 ~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~-G~Pa 1672 (2280)
.++.+.+|++||+||+||+||+|++| ||+|++.+ |+|+
T Consensus 422 ~~~~l~~~v~Ig~~~~i~ags~v~~d--vp~~~l~~~~~~~ 460 (501)
T 3st8_A 422 SDTMFVAPVTIGDGAYTGAGTVVRED--VPPGALAVSAGPQ 460 (501)
T ss_dssp TTCEEESSEEECTTCEECTTCEECSC--BCTTCEECCCCCC
T ss_pred CCCEEcCCcEECCCCEECCCCEECcc--cCCCCeEEeccCc
Confidence 99999999999999999999999999 99999755 5785
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=163.93 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=49.9
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
..+.++||++|+|++++.|..+++||++|+||+++.|.++-.|++++++.|.+.
T Consensus 259 I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~ 312 (372)
T 3pmo_A 259 IAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTM 312 (372)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCE
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCE
Confidence 346789999999999999999999999999999999999888999999999874
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=150.74 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=84.0
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+.+.||++|.|++++.| ..++||++|+||.++.|.+|++||++++||++|+|+++..+|+++++.|+|
T Consensus 70 ~~~~Ig~~~~I~~~~~i------------~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~p 137 (173)
T 1v3w_A 70 YPTEIGEYVTIGHNAMV------------HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVP 137 (173)
T ss_dssp BCEEECSSCEECTTCEE------------ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETT
T ss_pred CCeEECCCCEECCCCEE------------CCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcC
Confidence 35889999999999888 458999999999999999999999999999999999766699999999999
Q ss_pred CceeeecccchhhHHHHHhHHHHHHHHHhhhhh
Q 037878 1672 SPVMIKNTMHALDDRIEEMDMKYKKIVGNLSAN 1704 (2280)
Q Consensus 1672 a~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~ 1704 (2280)
.+..+.......+.+++..+.|.++.+++...
T Consensus 138 -a~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 169 (173)
T 1v3w_A 138 -GKVVRQLTEEEIEWTKKNAEIYVELAEKHIKG 169 (173)
T ss_dssp -EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CEEeccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666555666767777888877776543
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-14 Score=138.49 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHHHHhC-CCCccccCCCChhhcccchHHHHHHHHHHHHHhC-CccCcccccCcccHHHHHHHHHhh
Q 037878 1076 KMSNKDIVEFLKGLVSEQTG-IPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLG-VPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1076 ~~~~~~~e~~l~~iw~~vLg-~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g-~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
..+.+++|++|+++|+++|+ .+ .|+.+||||++|||||+|++|+.+|++.++ +++++.+||++||+++||+.+...
T Consensus 20 t~~~~~~E~~La~iW~~vL~~~~--~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~~ 97 (110)
T 2cq8_A 20 TEAELVTAEAVRSVWQRILPKVL--EVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRK 97 (110)
T ss_dssp CTTHHHHHHHHHHHHHHHCSSCS--CCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhCCCC--CCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 34567899999999999999 65 799999999999999999999999999999 999999999999999999999754
Q ss_pred h
Q 037878 1154 V 1154 (2280)
Q Consensus 1154 ~ 1154 (2280)
.
T Consensus 98 ~ 98 (110)
T 2cq8_A 98 L 98 (110)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=153.35 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=87.3
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccC-------CCceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYS-------SIGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~-------~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||++++|+.++.+.....++||++|+|+++|.|.++.+. .+....++++||++||||.+++|++|++||+
T Consensus 75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 154 (203)
T 1krr_A 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred CeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECC
Confidence 578999999988766666678999999999999999654321 1223567899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
||+||++|+|+++ +|+++++.|+||. .+|+.
T Consensus 155 ~~vIgagsvV~~d--vp~~~vv~G~PAr-vik~~ 185 (203)
T 1krr_A 155 NSVIGAGSIVTKD--IPPNVVAAGVPCR-VIREI 185 (203)
T ss_dssp TCEECTTCEECSC--BCTTEEEETTTTE-EEEEC
T ss_pred CCEECCCCEECCC--cCCCcEEEccCcE-EeccC
Confidence 9999999999999 9999999999954 44443
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=156.61 Aligned_cols=87 Identities=13% Similarity=0.264 Sum_probs=73.2
Q ss_pred eeCCCceeccCCcccC-----CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1575 KIGRYCSIRAINPVSC-----PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~-----~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.||++|.|+..+.+.. ...+.||++|.|+.++.|. ..++||++|+||+++.+.++++||++++|
T Consensus 85 ~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~-----------~~~~IG~~~~i~~~~~i~~~v~Igd~~~I 153 (266)
T 3r0s_A 85 VIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIA-----------HDCLLGNNIILANNATLAGHVELGDFTVV 153 (266)
T ss_dssp EECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred EECCCCEECCceEecCCcccCCccEEECCCceeCCcceEc-----------cccccCCCeEECCCceecCCeEECCCcEE
Confidence 4666666655544332 2459999999999999985 66899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCCC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
|++|+|.++-.|++++.+.|.+.
T Consensus 154 g~~a~V~~~v~Ig~~a~Vg~~s~ 176 (266)
T 3r0s_A 154 GGLTPIHQFVKVGEGCMIAGASA 176 (266)
T ss_dssp CTTCEECTTCEECTTCEECSSCB
T ss_pred ccCCEECCCcEECCCCEEccCCe
Confidence 99999999977799999988874
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=186.78 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=71.8
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccc--ccccCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKN--GKFYRSP 255 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~--~i~f~p~ 255 (2280)
.+....+.+|++.+.+++++.+ +|++|++|++|+.+++++ .|++.+| ++++||+||+|+|+++++ .+.|.|+
T Consensus 523 ~G~~~~~~~G~~~l~~aLa~gl--~I~l~t~V~~I~~~~~~v--~V~~~~G--~~i~Ad~VIvA~P~~vL~~~~i~f~P~ 596 (776)
T 4gut_A 523 AGDHTLLTPGYSVIIEKLAEGL--DIQLKSPVQCIDYSGDEV--QVTTTDG--TGYSAQKVLVTVPLALLQKGAIQFNPP 596 (776)
T ss_dssp CSCEEECTTCTHHHHHHHHTTS--CEESSCCEEEEECSSSSE--EEEETTC--CEEEESEEEECCCHHHHHTTCSEEESC
T ss_pred CCCeEEECChHHHHHHHHHhCC--cEEcCCeeEEEEEcCCEE--EEEECCC--cEEEcCEEEECCCHHHHhhcccccCCC
Confidence 4556778999999999999755 899999999999988865 6777788 479999999999999874 5789999
Q ss_pred CChhhHhhhccCCCC
Q 037878 256 TSKPTESETQVMDMD 270 (2280)
Q Consensus 256 ~~~~~~~~l~~~~l~ 270 (2280)
+++.+...+..+.++
T Consensus 597 Lp~~~~~ai~~l~~g 611 (776)
T 4gut_A 597 LSEKKMKAINSLGAG 611 (776)
T ss_dssp CCHHHHHHHHHEEEE
T ss_pred CCHHHHHHHHhCCCe
Confidence 998887776554433
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=168.37 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=43.9
Q ss_pred eCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEe
Q 037878 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYI 1668 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~ 1668 (2280)
++++||++|+||++++|.+|++||++|+||++|+|+++ +|++++|.
T Consensus 355 ~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~--vp~~~~v~ 400 (401)
T 2ggo_A 355 LGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD--VGYGEFFK 400 (401)
T ss_dssp CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEEC
T ss_pred cCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc--cCCCcEEe
Confidence 47999999999999999999999999999999999999 99999874
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-13 Score=162.54 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=78.1
Q ss_pred eeCCCceeccCCccc-CCcceEECCCcEeCCCcEEeeccc--------CCCceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1575 KIGRYCSIRAINPVS-CPQQVTLGAGVHLGDFSRIIPGFY--------SSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~-~~~~~~iG~~~~i~~~~~i~~~~~--------~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
.||++|.|+..+.+. ....++||++|.|+++|.|.++.. .......++++||++|+||++++|.+|++||+
T Consensus 107 ~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~ 186 (252)
T 3jqy_B 107 IIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGS 186 (252)
T ss_dssp EECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECT
T ss_pred EECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECC
Confidence 355555555544332 133699999999999999965421 11123557799999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceee
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMI 1676 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~ 1676 (2280)
||+||++|+|+++ +|+++++.|+||..+.
T Consensus 187 ~~~IgagsvV~~~--vp~~~~~~G~Pa~~i~ 215 (252)
T 3jqy_B 187 GSVIGYGSIVTKD--VPSMCAAAGNPAKIIK 215 (252)
T ss_dssp TCEECTTCEECSC--BCTTEEEEETTEEEEE
T ss_pred CCEECCCCEECcc--cCCCCEEEccCCEEEc
Confidence 9999999999999 9999999999964443
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=156.54 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=71.2
Q ss_pred eeCCCceeccCCccc-----CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1575 KIGRYCSIRAINPVS-----CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~-----~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.||+++.|+.++.+. ..+.+.||++|.|+.++.|. ..++||++|+||+++.+.++++||++++|
T Consensus 102 ~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~-----------~~~~IG~~v~i~~~~~i~~~v~Igd~~~I 170 (283)
T 4eqy_A 102 VIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIG-----------HDCRVGSHVVLSSNAQMAGHVEIGDWAIV 170 (283)
T ss_dssp EECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred EECCCcccCcceeEccceecCCCceEECCCcEECceeEEc-----------CCcEECCCcEECCCceEcCCcEECCCeEE
Confidence 455555555443332 23469999999999999995 56899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
|++|+|.++-.|++++++.|..
T Consensus 171 g~~a~V~~~v~Ig~~~vvg~~s 192 (283)
T 4eqy_A 171 GGMSGVHQYVRIGAHSMLGGAS 192 (283)
T ss_dssp CTTCEECTTCEECTTCEECTTC
T ss_pred ecCCEEcCCeEECCCcEECCCC
Confidence 9999999997789999998775
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-13 Score=152.95 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=89.6
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||++|+|+.++.+.....++||++|+|+++|.|.++.+.. +....++++||++||||.+++|++|++||+
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 153 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGE 153 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECT
T ss_pred CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECC
Confidence 6899999999988777667789999999999999996554321 223578999999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeeccc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~ 1680 (2280)
||+||++|+|+++ +|+++++.|+|| +.+|+..
T Consensus 154 ~~vIgagsvV~~d--vp~~~v~~G~Pa-k~i~~~~ 185 (199)
T 3ftt_A 154 GSVIGAGSVVTKD--IPPHSLAVGNPC-KVVRKID 185 (199)
T ss_dssp TCEECTTCEECSC--BCTTEEEETTTT-EEEEECC
T ss_pred CCEECCCCEECcc--cCCCCEEEEECC-EEEeeCC
Confidence 9999999999999 999999999995 4444443
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=153.44 Aligned_cols=86 Identities=9% Similarity=0.095 Sum_probs=71.7
Q ss_pred CeeCCCceeccCCccc----CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1574 AKIGRYCSIRAINPVS----CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~----~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
..||++|.|+.++.+. ..+.+.||++|.|+.++.|+ +.++||++++|++++.+..+++||++++|
T Consensus 80 v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~-----------~~~~IG~~~~i~~~~~i~~~v~Igd~~~I 148 (259)
T 3hsq_A 80 TVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVG-----------HDCILGNNNILTHGAVLAGHVTLGNFAFI 148 (259)
T ss_dssp EEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECSSCEE
T ss_pred EEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEEC-----------CCcEECCccEEcCCceECCccEECCCcEE
Confidence 3456666665544433 34579999999999999995 66899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
|++|+|.++-.+++++++.|.
T Consensus 149 g~~a~V~~~v~Ig~~~~Vg~~ 169 (259)
T 3hsq_A 149 SGLVAVHQFCFVGDYSMVAGL 169 (259)
T ss_dssp CSSEEECTTCEECTTCEECSS
T ss_pred eCCCEECCCCEECCCCEECCC
Confidence 999999999777999988765
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-12 Score=167.93 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred EcCCHHHHHHHHHhHC-----------CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccc--c
Q 037878 184 FKGGYTSLWQKLSKYL-----------PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNG--K 250 (2280)
Q Consensus 184 ~~gG~~~l~~~la~~l-----------g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~--i 250 (2280)
++||++.++++|++.+ +.+|++|++|++|+.+++++ .|++.+| ++++||+||+|+|+.+... +
T Consensus 201 ~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v--~v~~~~g--~~~~ad~vI~a~~~~~l~~~~~ 276 (472)
T 1b37_A 201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGV--TVKTEDN--SVYSADYVMVSASLGVLQSDLI 276 (472)
T ss_dssp CTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCE--EEEETTS--CEEEESEEEECSCHHHHHTTSS
T ss_pred cCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcE--EEEECCC--CEEEcCEEEEecCHHHhccCCe
Confidence 4799999999999876 46899999999999988865 5778888 4789999999999988655 5
Q ss_pred ccCCCCChhhHhhhccC
Q 037878 251 FYRSPTSKPTESETQVM 267 (2280)
Q Consensus 251 ~f~p~~~~~~~~~l~~~ 267 (2280)
.|.|++++.+...+..+
T Consensus 277 ~~~p~Lp~~~~~ai~~~ 293 (472)
T 1b37_A 277 QFKPKLPTWKVRAIYQF 293 (472)
T ss_dssp EEESCCCHHHHHHHHHS
T ss_pred eECCCCCHHHHHHHHhc
Confidence 68888887776665433
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-12 Score=155.52 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=49.5
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
..+.++||++|+|++++.+.++++||++|+||++|+|..+..|++++++.|.|.
T Consensus 242 I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~ 295 (357)
T 4e79_A 242 IAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM 295 (357)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred cCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence 346799999999999999999999999999999999998777999999999763
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-13 Score=150.00 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=87.7
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||++++|+.++.+.....++||++|.|+++|.|.++.+.. +....++++||++||||.+++|++|++||+
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 155 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGA 155 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECT
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECC
Confidence 5788889999887666666778999999999999997654321 223668899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
||+||++|+|+++ +|+++++.|+|| +.+|+.
T Consensus 156 ~~vIgagsvV~~d--vp~~~v~~G~Pa-~~i~~~ 186 (195)
T 3nz2_A 156 RSVVAANSVVNQD--VPPDTLVGGTPA-RILRSL 186 (195)
T ss_dssp TCEECTTCEECSC--BCSSEEEETTTT-EEEEEC
T ss_pred CCEECCCCEEccc--cCCCcEEEccCC-EEeccc
Confidence 9999999999999 999999999995 444544
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=148.34 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=88.4
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||++++|+.++.+.....++||++|.|+++|.|.++.+.. +....++++||++||||.+++|.+|++||+
T Consensus 78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 157 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGD 157 (190)
T ss_dssp TEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECT
T ss_pred ceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECC
Confidence 5789999999988777666789999999999999996654322 223467899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
||+||++|+|+++ +|+++++.|+|| +.+|+.
T Consensus 158 ~~vIgagsvV~~d--vp~~~v~~G~Pa-~~i~~~ 188 (190)
T 3hjj_A 158 NAVIASGAVVTKD--VPNNVVVGGNPA-KVIKTI 188 (190)
T ss_dssp TCEECTTCEECSC--BCTTEEEETTTT-EEEEEC
T ss_pred CCEECCCCEECcc--cCCCCEEEccCC-EEeccC
Confidence 9999999999999 999999999995 444543
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-12 Score=151.40 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=70.1
Q ss_pred eeCCCceeccCCcccCC-----cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1575 KIGRYCSIRAINPVSCP-----QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~-----~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.||+++.|+.++.+... +.+.||++|.|++++.|. ..++||++++|++++.+..+++||++++|
T Consensus 85 ~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~-----------~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~I 153 (262)
T 2qia_A 85 EIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIA-----------HDCTVGNRCILANNATLAGHVSVDDFAII 153 (262)
T ss_dssp EECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred EECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEEC-----------CCCEECCCeEECCcccccCCcEECCCcEE
Confidence 45555555554433221 469999999999999885 56799999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
|++++|.++-.+.++++..+.
T Consensus 154 g~~~~I~~~v~Ig~~~~ig~~ 174 (262)
T 2qia_A 154 GGMTAVHQFCIIGAHVMVGGC 174 (262)
T ss_dssp CTTCEECTTCEECTTCEECSS
T ss_pred ccCCEECCCCEECCCCEEccC
Confidence 999999999888999988764
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-12 Score=150.88 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=70.1
Q ss_pred eeCCCceeccCCcccCC-----cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1575 KIGRYCSIRAINPVSCP-----QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~-----~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.||+++.|+..+.+... ..+.||+++.|++++.|. +.++||++|+|++++.+..+++||++++|
T Consensus 81 ~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~-----------~~~~IG~~~~I~~~~~i~~~v~Igd~~~I 149 (270)
T 1j2z_A 81 IIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVA-----------HDCVIGSHCILANGVTLAGHIEIGDYVNI 149 (270)
T ss_dssp EECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECSSCEE
T ss_pred EECCCCEECCCeEEcCCeecCCccEEECCCcEECcccccC-----------CCcEECCCcEEcCCccccCccEECCCeEE
Confidence 45666666554443321 369999999999999884 56899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
|++++|.++-.|.+++++.+.
T Consensus 150 g~~a~V~~~v~IG~~a~Ig~~ 170 (270)
T 1j2z_A 150 GGLTAIHQFVRIAKGCMIAGK 170 (270)
T ss_dssp CTTCEECTTCEECTTCEECTT
T ss_pred ecCCEECCCcEeCCceEEecC
Confidence 999999999888899988665
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=132.86 Aligned_cols=75 Identities=9% Similarity=0.238 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
+.+++|+.|+++|+++||++ .|+.++|||++|||||.+++++.+|++.+|+.+++.++|++||+++||+++.+..
T Consensus 13 ~~~~~e~~l~~i~~~vL~~~--~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~ 87 (93)
T 4i4d_A 13 RRRALERDIAAIWAETLGRD--SVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATL 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTCS--CCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHc
Confidence 46789999999999999996 7999999999999999999999999999999999999999999999999998754
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=151.60 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=80.1
Q ss_pred HHHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCc---eEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1569 LRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIG---FIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1569 lR~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~---~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
....|+.||+++.|+.++.+.....+.||++|.||++|.|..+...++. ....+++||++|+||.+++|++|++||+
T Consensus 160 ~~~~gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~ 239 (287)
T 3mc4_A 160 SSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQ 239 (287)
T ss_dssp HHHTCCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECT
T ss_pred eeccCeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECC
Confidence 3455788888888877665554455666666666666666543322221 1234689999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceee
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMI 1676 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~ 1676 (2280)
||+||++|+|.++ +|+++++.|+||..+.
T Consensus 240 ~a~IGagsvV~kd--Vp~~svvvG~PAkii~ 268 (287)
T 3mc4_A 240 CSKIAAGSVVLKS--VPHNVTVAGVPARIIG 268 (287)
T ss_dssp TCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred CCEECCCCEEccc--cCCCCEEEccCCEEeC
Confidence 9999999999999 9999999999954443
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=147.12 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=87.9
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||++++|+..+.+.....++||++|.|+++|.|.++.+.. +....++++||++||||.+++|++|++||+
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 155 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD 155 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECS
T ss_pred CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECC
Confidence 5789999999987767666788999999999999996544321 222457899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
||+||++|+|+++ +|+++++.|+|| +.+|+.
T Consensus 156 ~~vIgagsvV~~d--vp~~~v~~G~Pa-~vi~~i 186 (188)
T 3srt_A 156 NVVIGAGSVVTKD--IPPNTVAVGNPC-RVIKKI 186 (188)
T ss_dssp SEEECTTCEECSC--BCSSEEEETTTT-EEEEEC
T ss_pred CCEECCCCEECcc--cCCCCEEEccCC-EEeccC
Confidence 9999999999999 999999999995 444543
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=146.44 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=85.5
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||++++|+.++.+.+...++|||+|.|+++|.|.++.+.- +....++++||++||||.+++|++|++||+
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~ 151 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEECC
Confidence 5789999999987767667789999999999999996543211 112357899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
||+||++|+|+++ +|+++++.|+||.
T Consensus 152 ~~vIgagsvV~~d--ip~~~vv~G~Pa~ 177 (182)
T 1ocx_A 152 NVVVASGAVVTKD--VPDNVVVGGNPAR 177 (182)
T ss_dssp TCEECTTCEECSC--BCSSEEEETTTTE
T ss_pred CCEECCCCEECCc--CCCCcEEEccccE
Confidence 9999999999999 9999999999954
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=152.70 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=49.4
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
..+.++||++|+|+.++.+.++++||++|+||++|+|.++-.|++++++.|.+.
T Consensus 237 I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~ 290 (341)
T 3eh0_A 237 IAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGM 290 (341)
T ss_dssp ECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCE
T ss_pred EeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCE
Confidence 346789999999999999999999999999999999999767999999999873
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=144.78 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=86.4
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+++||++++|+.++.+.+...++||++|+|+++|.|.+..+.- +....++++||++||||.+++|++|++||+
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~ 153 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGD 153 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEECT
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEECC
Confidence 5789999999887666666789999999999999996543211 112357899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeec
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKN 1678 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~ 1678 (2280)
||+||++|+|+++ +|+++++.|+|| +.+|+
T Consensus 154 ~~vIgagsvV~~~--vp~~~vv~G~Pa-~vi~~ 183 (185)
T 2p2o_A 154 NAVIASGAVVTKD--VPANAVVGGNPA-KVIKW 183 (185)
T ss_dssp TCEECTTCEECSC--BCTTEEEEETTE-EEEEE
T ss_pred CCEECCCCEECCC--CCCCcEEEcccC-EEeee
Confidence 9999999999999 999999999995 44443
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=99.33 E-value=9.1e-13 Score=129.21 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=70.1
Q ss_pred CChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1077 MSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1077 ~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.+.+++|+.|+++|+++||++ .|+.++|||++|||||.+++++.++++.+|+++++.++|++||+++||+++.+.
T Consensus 10 ~p~~~~e~~l~~i~~~vL~~~--~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~~ 84 (91)
T 1dny_A 10 APTNAVESKLAEIWERVLGVS--GIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATR 84 (91)
T ss_dssp CCSSHHHHHHHHHHHHHHTCS--SCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHh
Confidence 356889999999999999996 899999999999999999999999999999999999999999999999998753
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=148.60 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=73.0
Q ss_pred CeeCCCceeccCCccc----CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1574 AKIGRYCSIRAINPVS----CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~----~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.+||+++.|+..+.+. ..+.+.||+++.|+.++.|. +.++||++|+|++++.+..+++|||+++|
T Consensus 109 i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~-----------~~~~IG~~~~i~~~~~i~g~v~Igd~~~I 177 (305)
T 3t57_A 109 LCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIA-----------HDCKIGDRNIFANNTLLAGHVVVEDNTHT 177 (305)
T ss_dssp EEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECSSCEE
T ss_pred EEECCCcccCceEEEeecccccCccEEccCccccceEEEe-----------CceEeCCceEECCCcccCCCCEECCceEE
Confidence 3577777777665543 24679999999999999985 67899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
|+++.|.++-.|.+++++.+.
T Consensus 178 g~~~~V~~~v~IG~~a~ig~g 198 (305)
T 3t57_A 178 AGASVVHQFCHIGSFAFIGGG 198 (305)
T ss_dssp CTTCEECTTCEECTTCEECTT
T ss_pred cCCCEEcCCeEECCCCEEcCC
Confidence 999999998888888888765
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=146.08 Aligned_cols=113 Identities=9% Similarity=0.073 Sum_probs=84.4
Q ss_pred CCeeCCCceeccCC---cc-----------cCCcceEECCCcEeCCCcEEeec-----ccC-------------------
Q 037878 1573 GAKIGRYCSIRAIN---PV-----------SCPQQVTLGAGVHLGDFSRIIPG-----FYS------------------- 1614 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~---~~-----------~~~~~~~iG~~~~i~~~~~i~~~-----~~~------------------- 1614 (2280)
++.||++++|+... .+ .+...++||++|.|+++|.|.+. ...
T Consensus 24 ~v~IG~~t~I~~~~~~~~~~~~~~~i~~~~~i~~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~ 103 (212)
T 3eev_A 24 NIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADAR 103 (212)
T ss_dssp TEEECSSCEECCGGGCSCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCC
T ss_pred CeEECCCeEEccccCccccccceeEECCCccccCCcEECCCCEECCCCEEEeCCCCcccccceeeccceeeccccccccc
Confidence 57788888876311 00 12357899999999999987432 111
Q ss_pred CCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeecccchhhHHH
Q 037878 1615 SIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRI 1687 (2280)
Q Consensus 1615 ~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~l 1687 (2280)
.+....++++||++|+||++|+|++|++||++|+||++|+|+++ +|++++|.|+||..+.+|...+..+++
T Consensus 104 ~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d--Vp~~~vv~G~PAk~i~~~~~~~~~~~l 174 (212)
T 3eev_A 104 DGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD--VAPYEVVGSNPAKHIKFRFSDVEIAML 174 (212)
T ss_dssp CCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHH
T ss_pred CCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEEeccCCHHHHHHH
Confidence 11124578999999999999999999999999999999999999 999999999996555445444333333
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=145.05 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=62.0
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
+.||++|+|++++.+.+..... ..++++||++|+||.+++|.+|++||++|+|+++|+|+++ +|+++++.|+||.
T Consensus 140 ~~IG~~~~I~~~~~i~~~~~~~---~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~--vp~~~v~~G~Pak 214 (240)
T 3r8y_A 140 ATVGKNCHVGAGAVLAGVIEPP---SAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVVAGTPAR 214 (240)
T ss_dssp CEECTTCEECTTCEECCCCSCT---TSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEE
T ss_pred CEECCCcEECCCcEECCCccCC---CCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCcEEEccCCE
Confidence 4555556666666653322111 2267899999999999999999999999999999999999 9999999999954
Q ss_pred eeeecc
Q 037878 1674 VMIKNT 1679 (2280)
Q Consensus 1674 ~~~~~~ 1679 (2280)
.+++.
T Consensus 215 -~i~~~ 219 (240)
T 3r8y_A 215 -VIKEI 219 (240)
T ss_dssp -EEEEC
T ss_pred -EEecC
Confidence 44443
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=143.77 Aligned_cols=67 Identities=31% Similarity=0.477 Sum_probs=61.3
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
++|||+|+|++++.|. +.++||++|+||.+++|.+|++||++++||++|+|+++ +|+++++.|+||+
T Consensus 148 ~~Ig~~~~i~~~~~i~-----------~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~--v~~~~~~~G~Pa~ 214 (220)
T 4ea9_A 148 CRLGAACHLGPASALA-----------GGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLAIGVPAK 214 (220)
T ss_dssp CEECTTCEECTTCEEC-----------SSCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEEETTTTE
T ss_pred CEECCCCEECCCCEEc-----------CCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEccc--cCCCcEEEEeCCE
Confidence 6777788888888874 56899999999999999999999999999999999999 9999999999965
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=142.59 Aligned_cols=113 Identities=14% Similarity=0.187 Sum_probs=82.1
Q ss_pred CCeeCCCceec-------cCCcc----cCCcceEECCCcEeCCCcEEe----ecccCCCc--------------------
Q 037878 1573 GAKIGRYCSIR-------AINPV----SCPQQVTLGAGVHLGDFSRII----PGFYSSIG-------------------- 1617 (2280)
Q Consensus 1573 G~~IG~~~~i~-------~~~~~----~~~~~~~iG~~~~i~~~~~i~----~~~~~~~~-------------------- 1617 (2280)
+++||++++|+ ..+.+ ...+.++||++|.|++++.|. +|......
T Consensus 35 ~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (220)
T 4hur_A 35 NILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDL 114 (220)
T ss_dssp TEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGS
T ss_pred CEEECCCeEECCcCCcccCCeEEeCCCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecccccccccccccc
Confidence 57888888772 01111 123568888888888888863 11111111
Q ss_pred eEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeecccchhhHHH
Q 037878 1618 FIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRI 1687 (2280)
Q Consensus 1618 ~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~l 1687 (2280)
...++++||++|+||.+|+|++|++||+||+||++|+|+++ +|+++++.|+||..+.+|...+..+++
T Consensus 115 ~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d--Vp~~~vv~G~PAk~ir~r~~~~~i~~l 182 (220)
T 4hur_A 115 PLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKFIRKRFSDGVIEEW 182 (220)
T ss_dssp CCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHH
T ss_pred cccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc--CCCCcEEeCCCCEeehhcCCHHHHHHH
Confidence 13578999999999999999999999999999999999999 999999999996555555544433333
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=145.06 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=71.4
Q ss_pred HHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCc---eEeeCeEECCCcEEccCCeeCCCcEeCCC
Q 037878 1570 RLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIG---FIFGKVEVQDNSVIGSQSLVLPNSVVSRD 1646 (2280)
Q Consensus 1570 R~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~---~~~~~~~IG~~~~iG~~~~v~~g~~ig~~ 1646 (2280)
...|+.|+.++.|+..+.+.....+.||++|.||++|.|..+...++. ...++++||++|+||.+++|++|++||+|
T Consensus 134 ~~~g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~ 213 (267)
T 1ssq_A 134 VAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKY 213 (267)
T ss_dssp HHHSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTT
T ss_pred eccceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCC
Confidence 345666666555555443333334445555555555444332222211 01356899999999999999999999999
Q ss_pred cEEccCccccCCCccCCCcEEecCCCce
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
|+||++|+|.++ ||+++++.|+||..
T Consensus 214 a~IGagsvV~~d--Vp~~~~v~G~PAr~ 239 (267)
T 1ssq_A 214 AKIGANSVVLNP--VPEYATAAGVPARI 239 (267)
T ss_dssp CEECTTCEECSC--BCTTCEEETTTTEE
T ss_pred CEECCCCEEccC--CCCCCEEEecCcEE
Confidence 999999999999 99999999999543
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=144.27 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=74.0
Q ss_pred HHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCc---eEeeCeEECCCcEEccCCeeCCCcEeCCC
Q 037878 1570 RLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIG---FIFGKVEVQDNSVIGSQSLVLPNSVVSRD 1646 (2280)
Q Consensus 1570 R~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~---~~~~~~~IG~~~~iG~~~~v~~g~~ig~~ 1646 (2280)
...|+.|+.++.|+..+.+.....+.||++|.||++|.|..+...++. ....+++||++|+||++++|++|++||+|
T Consensus 154 ~~~g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~ 233 (289)
T 1t3d_A 154 VTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRG 233 (289)
T ss_dssp HHHSCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTT
T ss_pred eccceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCC
Confidence 345666666666655544433334555555555555555333222211 01356899999999999999999999999
Q ss_pred cEEccCccccCCCccCCCcEEecCCCceeeecc
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIGSQSPVMIKNT 1679 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~ 1679 (2280)
|+||++|+|+++ ||+++++.|+||. .+++.
T Consensus 234 a~IGagsvV~~d--Vp~~s~v~G~PAr-~i~~~ 263 (289)
T 1t3d_A 234 AKIGAGSVVLQP--VPPHTTAAGVPAR-IVGKP 263 (289)
T ss_dssp CEECTTCEECSC--BCTTCEEETTTTE-EEECC
T ss_pred CEECCCCEEccC--CCCCCEEEecCCE-EeCcC
Confidence 999999999999 9999999999954 44443
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=141.70 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=75.4
Q ss_pred eeCCCceeccCCcc-cCCcceEECCCcEeCCCcEEeecccC--------CCceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1575 KIGRYCSIRAINPV-SCPQQVTLGAGVHLGDFSRIIPGFYS--------SIGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~-~~~~~~~iG~~~~i~~~~~i~~~~~~--------~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+||++|.|+....+ .....++||++|.|+++|.|.++... ......++++||++|+||.+++|++|++||+
T Consensus 81 ~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~ 160 (215)
T 2wlg_A 81 QIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPN 160 (215)
T ss_dssp EECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECS
T ss_pred EEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECC
Confidence 46666666653221 11246788888888888888653211 0112346799999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEe-cCCCceee
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYI-GSQSPVMI 1676 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~-G~Pa~~~~ 1676 (2280)
+|+||++|+|+++ +|+++++. |+||..+.
T Consensus 161 ~~vIgagsvV~~~--vp~~~i~~aG~Pa~~i~ 190 (215)
T 2wlg_A 161 NVVVGSHTVLYKS--FKEPNCVIAGSPAKIVK 190 (215)
T ss_dssp SCEECTTCEECSC--CCCCSCEEETTTTEEEE
T ss_pred CCEECCCCEEcCc--cCCCeEEEcccCCEEEC
Confidence 9999999999999 99999999 99965443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=141.76 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=52.6
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccc-----cCCCccCCCcEEe
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVA-----PMHSVLQRGGIYI 1668 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v-----~~~~~v~~~~~~~ 1668 (2280)
+.||++|.|++++.|. ++++||++|+||++++|.. ++||++|+||++|+| +.+..+|+|+++.
T Consensus 112 ~~IG~~v~Ig~~~~I~-----------~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv~ 179 (213)
T 3kwd_A 112 VWIGDNVSITHMALIH-----------GPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVIT 179 (213)
T ss_dssp EEECTTCEECTTCEEE-----------EEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEECTTCEEC
T ss_pred eEECCCcEECCCcEEc-----------CCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEECCCcEEc
Confidence 6777777777777774 4577888888888888775 778888888888877 4444588888888
Q ss_pred -cCCCceeeecc
Q 037878 1669 -GSQSPVMIKNT 1679 (2280)
Q Consensus 1669 -G~Pa~~~~~~~ 1679 (2280)
|+||. .+++.
T Consensus 180 ~g~pa~-~i~~~ 190 (213)
T 3kwd_A 180 TQQQAD-RLPNV 190 (213)
T ss_dssp SHHHHT-TCCBC
T ss_pred CCCCcc-ccccC
Confidence 88853 33443
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=139.81 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=85.2
Q ss_pred HHcCCeeCCCceecc---CCccc-----------CCcceEECCCcEeCCCcEEee-----cccC----------------
Q 037878 1570 RLLGAKIGRYCSIRA---INPVS-----------CPQQVTLGAGVHLGDFSRIIP-----GFYS---------------- 1614 (2280)
Q Consensus 1570 R~lG~~IG~~~~i~~---~~~~~-----------~~~~~~iG~~~~i~~~~~i~~-----~~~~---------------- 1614 (2280)
+.-+.+||++++|+. .+.+. +...++||++|.|+++|.|.+ |...
T Consensus 19 ~~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~ 98 (212)
T 1xat_A 19 SNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAF 98 (212)
T ss_dssp CCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGG
T ss_pred ccCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccc
Confidence 445789999999985 11110 236899999999999999842 3210
Q ss_pred ----CCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeeccc
Q 037878 1615 ----SIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680 (2280)
Q Consensus 1615 ----~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~ 1680 (2280)
.+....++++||++|+||.+++|++|++||++|+||++|+|+++ +|++++|.|+||..+.+|..
T Consensus 99 ~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~~G~Pa~~i~~~~~ 166 (212)
T 1xat_A 99 AGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIRKRFS 166 (212)
T ss_dssp GGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSC
T ss_pred cccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEEEccCCEEEcccCC
Confidence 01124568999999999999999999999999999999999999 99999999999655544443
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=157.90 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=45.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~ 68 (2280)
|+.++||+|||||++||+||++|+++|+ +|+|+||++++||+++|++.++
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~g 57 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVTLSQ 57 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHHH
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCccccceeccc
Confidence 4456899999999999999999999998 6999999999999999987554
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=145.66 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=70.3
Q ss_pred cCCeeCCCceeccCCcc------cCCcceEECCCcEeCCCcEEeecccCCCc------eEeeCeEECCCcEEccCCeeCC
Q 037878 1572 LGAKIGRYCSIRAINPV------SCPQQVTLGAGVHLGDFSRIIPGFYSSIG------FIFGKVEVQDNSVIGSQSLVLP 1639 (2280)
Q Consensus 1572 lG~~IG~~~~i~~~~~~------~~~~~~~iG~~~~i~~~~~i~~~~~~~~~------~~~~~~~IG~~~~iG~~~~v~~ 1639 (2280)
.|+.|+.++.|+..+.+ .+.+.++||++|.|+++|.|++..+..+. ...++++||++|+||.+++|++
T Consensus 189 ~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~ 268 (310)
T 3f1x_A 189 TGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILG 268 (310)
T ss_dssp HSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEES
T ss_pred CCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECC
Confidence 35555555555444333 23445566666666666666544321100 1345679999999999999999
Q ss_pred CcEeCCCcEEccCccccCCCccCCCcEEecCCCcee
Q 037878 1640 NSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVM 1675 (2280)
Q Consensus 1640 g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~ 1675 (2280)
|++||+||+||++|+|.++ +|+++++.|+||...
T Consensus 269 gv~IGd~a~IGagsvV~~d--Vp~~svv~GnPAk~~ 302 (310)
T 3f1x_A 269 RVTIGKGATVGGNIWVTEN--VPAGSRIVQRKNKDE 302 (310)
T ss_dssp SCEECTTCEECSSCEECSC--BCTTCEECCCCCC--
T ss_pred CcEECCCCEECCCCEECCc--cCCCcEEECCCcccC
Confidence 9999999999999999999 999999999996433
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7e-11 Score=141.56 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=71.7
Q ss_pred eeCCCceeccCCccc-----CCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE
Q 037878 1575 KIGRYCSIRAINPVS-----CPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL 1649 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~-----~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v 1649 (2280)
.||+++.|+..+.+. ..+.+.||++|.|+.++.|. +.++||++|+|++++.+.++++||++++|
T Consensus 87 ~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~-----------~~~~Ig~~~~i~~~~~i~~~v~Igd~~~I 155 (265)
T 4e6u_A 87 EIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIA-----------HDCIVGDHNIFANNVGVAGHVHIGDHVIV 155 (265)
T ss_dssp EECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECSSCEE
T ss_pred EECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEc-----------ccEEECCCcEEcCCcEECCCcEECCCeEE
Confidence 466666665554433 23469999999999999985 56899999999999999999999999999
Q ss_pred ccCccccCCCccCCCcEEecCC
Q 037878 1650 GALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1650 g~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
|++|+|.++-.|++++++.+.-
T Consensus 156 g~~a~V~~~v~Ig~~~~i~~~s 177 (265)
T 4e6u_A 156 GGNSGIHQFCKIDSYSMIGGAS 177 (265)
T ss_dssp CTTCEECTTCEECTTCEECTTC
T ss_pred cCCCEECCCcEECCCCEEcCCC
Confidence 9999999997779999987754
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=146.95 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=73.1
Q ss_pred CeeCCCceeccCCcccC--CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEcc
Q 037878 1574 AKIGRYCSIRAINPVSC--PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGA 1651 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~--~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~ 1651 (2280)
++||++|+|+.++.+.. ...+.||+++.|+..+.|+ ..++||++|+|++++.+..+++||++|+||.
T Consensus 229 v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~-----------~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~ 297 (374)
T 2iu8_A 229 VIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIA-----------HQVEVGQHSMIVAQAGIAGSTKIGNHVIIGG 297 (374)
T ss_dssp EEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECSSCEECT
T ss_pred EEECCCCEECCCcEEccCcccceeECCCcEECCccccC-----------CccEECCCCEEccCcccCCCcEECCCeEEec
Confidence 68999999988766532 4568999999999998885 6679999999999999999999999999999
Q ss_pred CccccCCCccCCCcEEecC
Q 037878 1652 LSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1652 ~s~v~~~~~v~~~~~~~G~ 1670 (2280)
++.|..+-.|.+++...+.
T Consensus 298 ~~~i~~~v~Ig~~~~I~a~ 316 (374)
T 2iu8_A 298 QAGITGHICIADHVIMMAQ 316 (374)
T ss_dssp TCEECSSCEECTTEEECTT
T ss_pred CcEECCCcccCCCcEEccC
Confidence 9999888777777776543
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-11 Score=135.49 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=69.1
Q ss_pred eeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCcc
Q 037878 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~ 1654 (2280)
+||++|.|++.+.+ .+.+.||++|+|+.++.|. +.++||++|+||+++.|.++++||++++||++|+
T Consensus 109 ~IG~~~~I~~~~~i--~~~~~Ig~~~~I~~~~~i~-----------~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsv 175 (194)
T 3bfp_A 109 KIEKGVILNTSSVI--EHECVIGEFSHVSVGAKCA-----------GNVKIGKNCFLGINSCVLPNLSLADDSILGGGAT 175 (194)
T ss_dssp EECTTCEECTTCEE--CTTCEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EECCCCEECCCCEE--cCCCEECCCCEECCCCEEC-----------CCcEECCCCEEcCCCEECCCCEECCCCEECCCCE
Confidence 45555555544222 2347888888888888884 5689999999999999999999999999999999
Q ss_pred ccCCCccCCCcEEecCCCc
Q 037878 1655 APMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1655 v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
|.++ +|++++|.|+||+
T Consensus 176 v~~~--v~~~~~~~G~Pa~ 192 (194)
T 3bfp_A 176 LVKN--QDEKGVFVGVPAK 192 (194)
T ss_dssp ECSC--BCSCCEECCCCCC
T ss_pred Eccc--cCCCCEEEeeccE
Confidence 9999 9999999999964
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=137.60 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=83.6
Q ss_pred CCeeCCCceeccCC-------cc----cCCcceEECCCcEeCCCcEEee----cccCC--------------------Cc
Q 037878 1573 GAKIGRYCSIRAIN-------PV----SCPQQVTLGAGVHLGDFSRIIP----GFYSS--------------------IG 1617 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~-------~~----~~~~~~~iG~~~~i~~~~~i~~----~~~~~--------------------~~ 1617 (2280)
++.||++++|+... .+ ...+.++||++|.|+++|.|.+ |...+ +.
T Consensus 34 ~i~IG~~t~i~~~~~~~~~~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~ 113 (219)
T 4e8l_A 34 NILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDL 113 (219)
T ss_dssp SEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTS
T ss_pred CEEECCccEEcCCcCceecceEEeecceeCCCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccc
Confidence 57899999997631 01 1245799999999999999853 32221 11
Q ss_pred eEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeeccc
Q 037878 1618 FIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680 (2280)
Q Consensus 1618 ~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~ 1680 (2280)
...++++||++|+||++++|++|++||++|+||++|+|+++ +|+++++.|+||..+.+|..
T Consensus 114 ~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~d--v~~~~~~~G~Pa~~i~~r~~ 174 (219)
T 4e8l_A 114 PLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKFIRKRFS 174 (219)
T ss_dssp CCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSC
T ss_pred cccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCeEEEecCCEeecccCC
Confidence 23578999999999999999999999999999999999999 99999999999655544443
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-11 Score=122.02 Aligned_cols=97 Identities=24% Similarity=0.300 Sum_probs=68.8
Q ss_pred ecCCCeEEECCeeechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC----HH
Q 037878 910 GRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD----KD 985 (2280)
Q Consensus 910 GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~----~~ 985 (2280)
.|.|||||++|+||+|.|||++|.+||+|.+ +++++++++..+ +. ..++++..++...+ ++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~---~~vv~v~~~~~~----------~~--~~~~V~~~~~~~~~~~~~~~ 65 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGS---DYLITLETAESN----------DE--MTVEVELSQLFTDDYGRLQA 65 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEE---EEEEEEEEETTE----------EE--EEEEEEECTTCCCCHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCccc---ceEEEEeccccc----------ee--EEEEEEEeeccccccchhhh
Confidence 4999999999999999999999999999865 777777665322 12 22233333343333 45
Q ss_pred HHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcccch
Q 037878 986 VIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023 (2280)
Q Consensus 986 l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGKvdR 1023 (2280)
+.+.+++++..++.++. .+.++.+++||+| +||++|
T Consensus 66 l~~~i~~~l~~~~gv~~-~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 66 LTREITRQLKDEILVTP-RVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHSSCC-EEEEECTTCSCCC----CCC
T ss_pred hHHHHHHHHHHHhCCcc-ceEEEcCCeecCC-CCCcch
Confidence 66778888888877764 5677888899998 799988
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=142.37 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=65.3
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||.++.|.+.. .. .++||++|.|+.++.|++.... ...++++||++||||.+++| |++||+||+||+||
T Consensus 192 a~Ig~g~~In~~i--~i--Gv~IGd~v~IgpGa~IgG~~~~---~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGS 262 (332)
T 3fsy_A 192 AGTLGASMVEGRI--SA--GVVVGDGSDVGGGASIMGTLSG---GGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGL 262 (332)
T ss_dssp EEESSCCEECSEE--CT--TCEECTTCEECTTCEECSBCC------CCBCEECTTCEECTTCEE--CSCBCSSCEECTTC
T ss_pred CeECcCCEECCce--ec--ceEECCCCEECCCCEEcCCCCC---CCccceEECCCCEECCCCEE--eeEECCCCEECCCC
Confidence 3455555555431 11 1788888888888888644321 23468999999999999999 99999999999999
Q ss_pred cccCCCc--------cCCCcEEecCC
Q 037878 1654 VAPMHSV--------LQRGGIYIGSQ 1671 (2280)
Q Consensus 1654 ~v~~~~~--------v~~~~~~~G~P 1671 (2280)
+|++|.. +|++.+|.++|
T Consensus 263 VVtkdt~I~~~~g~~v~a~el~g~~~ 288 (332)
T 3fsy_A 263 YVTAGTRVTMPDSNSVKARELSGSSN 288 (332)
T ss_dssp EECTTCEEECTTSCEEEGGGGTTCSS
T ss_pred EECCCCEEEeCCCCEEEhHHhcCCCC
Confidence 9998843 45666666776
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=148.41 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=49.0
Q ss_pred CCeEEEEcCCHHHHHHHHHh---HCCCceEeCcceEEEEE-cCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 178 AGKIRRFKGGYTSLWQKLSK---YLPTEVHCNSEVLAIRR-DSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~---~lg~~I~l~t~V~~I~~-~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
...+..++||+++|++++++ ..|++|+++++|++|.. +++++ ..|++.+| ++++||+||++
T Consensus 245 ~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v-~gV~~~~G--~~i~Ad~VI~a 309 (475)
T 3p1w_A 245 KSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKV-CGIKSSDG--EIAYCDKVICD 309 (475)
T ss_dssp SCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCE-EEEEETTS--CEEEEEEEEEC
T ss_pred CCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeE-EEEEECCC--cEEECCEEEEC
Confidence 45666799999999999975 45899999999999998 55554 57888888 47999999998
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=142.42 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=68.2
Q ss_pred HHcCCeeCCCceeccCCcccC------CcceEECCCcEeCCCcEEeecccCCCce-----EeeCeEECCCcEEccCCeeC
Q 037878 1570 RLLGAKIGRYCSIRAINPVSC------PQQVTLGAGVHLGDFSRIIPGFYSSIGF-----IFGKVEVQDNSVIGSQSLVL 1638 (2280)
Q Consensus 1570 R~lG~~IG~~~~i~~~~~~~~------~~~~~iG~~~~i~~~~~i~~~~~~~~~~-----~~~~~~IG~~~~iG~~~~v~ 1638 (2280)
...|+.||.++.|+..+.+.. .+.+.||++|.|++++.|++....+... ...+++||++|+||++|+|+
T Consensus 160 ~~~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Il 239 (313)
T 3q1x_A 160 SYTSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVL 239 (313)
T ss_dssp HHHCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEE
T ss_pred ecCCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEEC
Confidence 345677766666666544433 3345555555555555554433322111 12357999999999999999
Q ss_pred CCcEeCCCcEEccCccccCCCccCCCcEEe--cCCCce
Q 037878 1639 PNSVVSRDVILGALSVAPMHSVLQRGGIYI--GSQSPV 1674 (2280)
Q Consensus 1639 ~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~--G~Pa~~ 1674 (2280)
+|++||+||+||++|+|+++ +|+|+++. |+||..
T Consensus 240 ggv~IG~~a~IGagsvV~~d--Vp~gs~vvi~G~PAkv 275 (313)
T 3q1x_A 240 GNIIVGSHVRIGANCWIDRD--VDSNQTVYISEHPTHF 275 (313)
T ss_dssp SSCEECSSEEECTTCEECSC--BCSSEEC---------
T ss_pred CCcEECCCCEECCCCEECCC--cCCCCEEEEcCCCcEE
Confidence 99999999999999999999 99999998 999543
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-11 Score=138.83 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=45.7
Q ss_pred ceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCC----EECCCCEECcCCccCC
Q 037878 1336 LVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGS----VIGEEAEVAPLQKSEG 1400 (2280)
Q Consensus 1336 ~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~----~ig~~a~ig~~s~v~~ 1400 (2280)
...|++++.|++++.|. +.+.||++|+|+++++|..++ +||+++.|++++.|..
T Consensus 59 ~~~I~~~~~I~~~a~I~-----------g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~ 116 (247)
T 1qre_A 59 APVIDPTAYIDPQASVI-----------GEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHA 116 (247)
T ss_dssp CCEECTTCEECTTCEEE-----------ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEE
T ss_pred CcEECCCcEECCCCEEe-----------CCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEe
Confidence 46788889888888885 567899999999999998765 8999999999888744
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-11 Score=153.57 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=43.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~ 67 (2280)
++||+|||||++||+||++|+++|+ +|+|+|+++++||+++|.+.+
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~ 48 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDS 48 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSSGGGCEEECT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEEecCCcCCcccccccc
Confidence 5799999999999999999999998 799999999999999998763
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-11 Score=136.92 Aligned_cols=90 Identities=21% Similarity=0.332 Sum_probs=76.7
Q ss_pred cCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccC---CCcceEeeeEEEccCeEEccceeEcCCcE
Q 037878 2184 GAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEG---DGGKVKFGKIRIGEGGFVGSRAAAMPGVR 2258 (2280)
Q Consensus 2184 g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 2258 (2280)
|.+|-||++++++.++.+.+...|+|| |+|.|+++|.|.+ |.... ..+.....+++||++||||++|+|+||++
T Consensus 73 g~~i~IG~~~~I~~~~~i~~~~~i~IG-~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~ 151 (203)
T 1krr_A 73 GSNIHIGRNFYANFNLTIVDDYTVTIG-DNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVT 151 (203)
T ss_dssp STTEEECSSCEECSCEEEECSSCEEEC-SSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCE
T ss_pred CCCeEECCeeEECCccEEecccceEEC-CCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeE
Confidence 333336799999999889988999999 9999999999987 54432 12345678999999999999999999999
Q ss_pred eCCCceecccceeecc
Q 037878 2259 IENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2259 ~~~~~~~~~~s~~~~~ 2274 (2280)
||++++||++|+|+|.
T Consensus 152 IG~~~vIgagsvV~~d 167 (203)
T 1krr_A 152 IGDNSVIGAGSIVTKD 167 (203)
T ss_dssp ECTTCEECTTCEECSC
T ss_pred ECCCCEECCCCEECCC
Confidence 9999999999999985
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=133.32 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=83.7
Q ss_pred cCCeeCCCceeccCC--cc---------cCCcceEECCCcEeCCCcEEee----cccCC--------------------C
Q 037878 1572 LGAKIGRYCSIRAIN--PV---------SCPQQVTLGAGVHLGDFSRIIP----GFYSS--------------------I 1616 (2280)
Q Consensus 1572 lG~~IG~~~~i~~~~--~~---------~~~~~~~iG~~~~i~~~~~i~~----~~~~~--------------------~ 1616 (2280)
-++.||++++|+... .+ .....++||++|.|+++|.|.+ |...+ .
T Consensus 28 ~~i~IG~~~~I~~~~~~~i~~~~i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~ 107 (209)
T 1mr7_A 28 ENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQ 107 (209)
T ss_dssp TTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGG
T ss_pred CCeEECCCcEEcCCCceEEeceEEeeccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCccccccccccc
Confidence 478999999998641 11 1245699999999999998743 22211 0
Q ss_pred ceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeeccc
Q 037878 1617 GFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680 (2280)
Q Consensus 1617 ~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~ 1680 (2280)
....++++||++|+||++++|++|++||++++||++|+|+++ +|+++++.|+||..+.++..
T Consensus 108 ~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~~G~Pa~~i~~~~~ 169 (209)
T 1mr7_A 108 LPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFD 169 (209)
T ss_dssp SCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEESSC
T ss_pred ccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEEEeeCCEEeeccCC
Confidence 124567999999999999999999999999999999999999 99999999999655433443
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=144.02 Aligned_cols=48 Identities=35% Similarity=0.477 Sum_probs=44.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC-CCCCceEEEEee
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY-HTVGGMCESVEI 66 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~-~riGG~~~t~~~ 66 (2280)
++.++||+|||||+|||+||+.|+++|+ +|+|||++ +++||+++|++.
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~~~~vGGr~~t~~~ 89 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEANANRVGGRIKTFHA 89 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSCSSCCBTTCCEECC
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCC-cEEEEeccccccCCceeeecc
Confidence 4456899999999999999999999998 79999999 999999999873
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=136.00 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=34.3
Q ss_pred HHHHcCCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCE
Q 037878 1312 WFEMLGAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAE 1391 (2280)
Q Consensus 1312 ~~R~lGa~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ 1391 (2280)
.++..|++|++++.|.. .+.||++|.|+++ .+. ..+.||++|.|+.+++|+.++.||+++.
T Consensus 124 ~~~~~g~~I~p~a~I~~-------~v~Ig~g~~I~~~-~I~-----------~~~~IG~~~~I~~~~~Ig~~~~IG~~v~ 184 (304)
T 3eg4_A 124 EFEKAGFRAVPNCIVRH-------SAYIAPNAILMPS-FVN-----------LGAYVDKGAMIDTWATVGSCAQIGKNVH 184 (304)
T ss_dssp HHHHHCCEECTTCEEBT-------TCEECTTCEECSE-EEC-----------TTCEECTTCEECTTEEECTTCEECTTCE
T ss_pred HhccCCcEEcCCEEECC-------CcEECCCCEEeCC-EEC-----------CCCEECCCcEEcCCcEECCCCccCCCcE
Confidence 45667888887776653 2346666666553 221 2233555555554444444444444444
Q ss_pred ECcCC
Q 037878 1392 VAPLQ 1396 (2280)
Q Consensus 1392 ig~~s 1396 (2280)
|++++
T Consensus 185 I~~~~ 189 (304)
T 3eg4_A 185 LSGGV 189 (304)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 44433
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=137.62 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=51.1
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCC-------------c
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHS-------------V 1660 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~-------------~ 1660 (2280)
++||++|+|+.++.|.+... ....++++||++|+||.+++|.+|++||++|+||++|+|+++. .
T Consensus 152 ~~IG~~v~I~~~~~i~g~~~---~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~ 228 (276)
T 3gos_A 152 AQIGKNVHLSGGVGIGGVLE---PLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGR 228 (276)
T ss_dssp CEECTTCEECTTCEECCCCS---STTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSE
T ss_pred CEECCCCEECCCCEECCccc---cCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccc
Confidence 45555566665555532110 1122567888888888888888888888888888888888711 3
Q ss_pred cCCCcEE-ecC-C
Q 037878 1661 LQRGGIY-IGS-Q 1671 (2280)
Q Consensus 1661 v~~~~~~-~G~-P 1671 (2280)
||+++++ .|+ |
T Consensus 229 Vp~~svvv~G~~P 241 (276)
T 3gos_A 229 VPAGSVVVSGNLP 241 (276)
T ss_dssp ECTTEEEEEEEEE
T ss_pred cCCCcEEECCCcc
Confidence 9999999 497 7
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.9e-11 Score=155.71 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=73.1
Q ss_pred CCeEEEEcCCHHHHHHHHHhHC--CCceEeCcceE--EEEEcCCc-----cEEEE-EeCCCceEEEEeCEEEEcCCcccc
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYL--PTEVHCNSEVL--AIRRDSTT-----VGVDV-KHSNGECEVMEFDKIIISGAFPVK 247 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~l--g~~I~l~t~V~--~I~~~~~~-----v~V~v-~t~~G~~~~i~aD~VI~A~p~~v~ 247 (2280)
...++.+.||+++|+++|++++ |..|++|++|+ +|.+++++ ..|.| .+.+|+.++++||+||+|+|++++
T Consensus 336 ~~~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L 415 (721)
T 3ayj_A 336 SNEYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQL 415 (721)
T ss_dssp TCEECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHH
T ss_pred ccceeEECCcHHHHHHHHHHhcccCCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHH
Confidence 4567889999999999999998 78899999999 99886544 12455 456675457899999999999987
Q ss_pred c------ccc-------c--------------CCC-C-C-------hhhHhhhccCCCChhhH
Q 037878 248 N------GKF-------Y--------------RSP-T-S-------KPTESETQVMDMDELEK 274 (2280)
Q Consensus 248 ~------~i~-------f--------------~p~-~-~-------~~~~~~l~~~~l~~~~k 274 (2280)
. .|. + .|+ . + ..+...+..+.++...|
T Consensus 416 ~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~K 478 (721)
T 3ayj_A 416 TPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSK 478 (721)
T ss_dssp HHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEE
T ss_pred hhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceE
Confidence 3 355 3 344 4 6 66777777776666555
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-10 Score=134.78 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=67.3
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC----------CcE
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP----------NSV 1642 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~----------g~~ 1642 (2280)
+++||+++.|+..+. ..+.+.||++|.|++++.|+ ..++||++++++.++.+.. +++
T Consensus 106 ~~~Ig~~~~Ig~~~~--i~~~~~IG~~~~I~~~~~I~-----------~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~ 172 (273)
T 3fs8_A 106 NTKIGNNVKIGTLSD--IQHHVYIGNYVNIHSNVFVG-----------EKSIIKDFVWLFPHVVLTNDPTPPSNELLGVT 172 (273)
T ss_dssp SCEECSSCEECTTCE--ECSSCEECSSCEECTTCEEC-----------TTCEECTTCEECTTCEECCCSSSSCSCCCCCE
T ss_pred CCEECCCCEECccce--eCCceEECCceEECCCCEEC-----------CCceeCCceeecCceEecCCCCCcccccCCcE
Confidence 367777777776532 23458888888888888885 4568899999988888876 799
Q ss_pred eCCCcEEccCccccCCCccCCCcEEecC
Q 037878 1643 VSRDVILGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1643 ig~~~~vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
||+++.||++++|.++-.|.++++....
T Consensus 173 Ig~~~~IG~~~~I~~g~~IG~~~~Igag 200 (273)
T 3fs8_A 173 IELFAVIAARSVVLPGIHINEDALVGAG 200 (273)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ECCCeEEcCCCEEcCCCEECCCCEECCC
Confidence 9999999999999988888888877443
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=140.14 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=64.5
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|.|... ..+.+.+.||++|+|+.++.|.+..+. ...++++||++|+||.+++|++|++||+||+||++|
T Consensus 175 ~~IG~~~~I~~~--~~Ig~~~~IG~~v~I~~~~~I~~~~~~---~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgags 249 (316)
T 3tk8_A 175 AYVDEGTMVDTW--ATVGSCAQIGKNVHLSGGVGIGGVLEP---LQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGV 249 (316)
T ss_dssp CEECTTCEECTT--EEECTTCEECTTCEECTTCEECCCCSS---TTSCCCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CEECCCCEEccc--eEECCCCEECCCCEEcCCCEECCCccc---ccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCC
Confidence 345555555443 111223456666666666666432111 134678999999999999999999999999999999
Q ss_pred cccCCC-------------ccCCCcEE-ecC-C
Q 037878 1654 VAPMHS-------------VLQRGGIY-IGS-Q 1671 (2280)
Q Consensus 1654 ~v~~~~-------------~v~~~~~~-~G~-P 1671 (2280)
+|.++. .||+|+++ .|+ |
T Consensus 250 vV~~~t~I~d~~~~~v~~g~Vp~gsvVvaGsvP 282 (316)
T 3tk8_A 250 YLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLP 282 (316)
T ss_dssp EECTTCCEEETTTCCEECSEECTTEEEEEEEEE
T ss_pred EEcCCeeecccccccccccEeCCCCEEECCCCc
Confidence 999821 39999999 597 7
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.2e-12 Score=158.86 Aligned_cols=48 Identities=27% Similarity=0.307 Sum_probs=44.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCCCCCceEEEEee
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYHTVGGMCESVEI 66 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~riGG~~~t~~~ 66 (2280)
|..++||+|||||++||+||++|+++ |+ +|+|+|+++++||+++|.+.
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~-~v~v~E~~~~~GG~~~~~~~ 52 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDK-RVLVLERRPHIGGNAYSEAE 52 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCC-CEEEECSSSSSSGGGCEEEC
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCC-CEEEEeCCCCCCCeeeeccc
Confidence 44568999999999999999999999 98 69999999999999999886
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.11 E-value=7.5e-11 Score=137.77 Aligned_cols=77 Identities=16% Similarity=0.048 Sum_probs=56.7
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|.|.+...+ . ++||++|+|+.+|.|++.... ...++++||++|+||++++| |++||+||+||++|
T Consensus 215 a~IGdg~iI~~~a~i--g--v~IGdnv~IgpGa~IgG~~~~---~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGS 285 (347)
T 3r5d_A 215 AGTEGPGMIEGRVSA--G--VFVGKGSDLGGGCSTMGTLSG---GGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGL 285 (347)
T ss_dssp EEESSSEEECSEECT--T--CEECTTEEECTTCEECC---------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTC
T ss_pred CEECCCcEEcCCceE--e--EEECCCCEECCCCEEccccCC---CCccceEECCCCEECCCCEE--eeEECCCCEECCCC
Confidence 455666666554211 1 778888888888888543211 13468999999999999999 99999999999999
Q ss_pred cccCCC
Q 037878 1654 VAPMHS 1659 (2280)
Q Consensus 1654 ~v~~~~ 1659 (2280)
+|++|.
T Consensus 286 VVtkdt 291 (347)
T 3r5d_A 286 YITAGT 291 (347)
T ss_dssp EECTTC
T ss_pred EECCCC
Confidence 999994
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-10 Score=146.53 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEe
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE 65 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~ 65 (2280)
|+.++||+|||||++||+||++|+++|+ +|+|+|+++++||+++|++
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~-~v~~~e~~~~~gg~~~s~~ 49 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGK-KVLHMDRNPYYGGESSSIT 49 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTSCEEC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCccccccccc
Confidence 5567899999999999999999999998 6999999999999999987
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=132.23 Aligned_cols=85 Identities=25% Similarity=0.452 Sum_probs=75.3
Q ss_pred ccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccC---CCcceEeeeEEEccCeEEccceeEcCCcEeCCCc
Q 037878 2189 LGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEG---DGGKVKFGKIRIGEGGFVGSRAAAMPGVRIENGG 2263 (2280)
Q Consensus 2189 ~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 2263 (2280)
||++++|+.++.+.+...|+|| |+|.|+++|.|.+ |.... ..+....++|+||++||||++|+|+||++||+++
T Consensus 77 IG~~~~I~~~~~i~~~~~v~IG-~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~ 155 (199)
T 3ftt_A 77 LGKNVYVNTNCYFMDGGQITIG-DNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGS 155 (199)
T ss_dssp ECSSEEECTTEEEECSSCEEEC-SSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECTTC
T ss_pred ECCCeEECCCeEEecCCEEEEC-CCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECCCC
Confidence 5599999999999999999999 9999999999988 43332 2345668999999999999999999999999999
Q ss_pred eecccceeecc
Q 037878 2264 SLSSLSLAMKE 2274 (2280)
Q Consensus 2264 ~~~~~s~~~~~ 2274 (2280)
+||++|+|+|.
T Consensus 156 vIgagsvV~~d 166 (199)
T 3ftt_A 156 VIGAGSVVTKD 166 (199)
T ss_dssp EECTTCEECSC
T ss_pred EECCCCEECcc
Confidence 99999999984
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=146.58 Aligned_cols=46 Identities=33% Similarity=0.377 Sum_probs=42.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~ 68 (2280)
+||+|||||++||+||++|+++|+ +|+|+|+++++||++++...++
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g 47 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEG 47 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSSSSGGGCEEEETT
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCcceEeeccCC
Confidence 589999999999999999999998 6999999999999999977543
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=129.95 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||++|.|+..+.+. ..++|||+|+||.++.|. + ++||++|+||++++| .+++|++++.|++++
T Consensus 112 ~~IG~~v~Ig~~~~I~--~~v~Ig~~v~IG~~a~I~-----------~-~~Ig~~~~Igags~V-~~~~i~~~~~v~~~~ 176 (213)
T 3kwd_A 112 VWIGDNVSITHMALIH--GPAYIGDGCFIGFRSTVF-----------N-ARVGAGCVVMMHVLI-QDVEIPPGKYVPSGM 176 (213)
T ss_dssp EEECTTCEECTTCEEE--EEEEECTTCEECTTCEEE-----------E-EEECTTCEECSSCEE-ESCEECTTBEECTTC
T ss_pred eEECCCcEECCCcEEc--CCCEECCCCEECCCCEEe-----------C-cEECCCCEEcCCCEE-CCcEeCCCCEECCCc
Confidence 5688888887764332 348999999999999983 3 899999999999999 689999999999999
Q ss_pred cccCCCccCCCc
Q 037878 1654 VAPMHSVLQRGG 1665 (2280)
Q Consensus 1654 ~v~~~~~v~~~~ 1665 (2280)
++.++ .|+..
T Consensus 177 vv~~g--~pa~~ 186 (213)
T 3kwd_A 177 VITTQ--QQADR 186 (213)
T ss_dssp EECSH--HHHTT
T ss_pred EEcCC--CCccc
Confidence 99876 55544
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=130.02 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=76.7
Q ss_pred hcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccCC---CcceEeeeEEEccCeEEccceeEcCCc
Q 037878 2183 MGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEGD---GGKVKFGKIRIGEGGFVGSRAAAMPGV 2257 (2280)
Q Consensus 2183 ~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~g~ 2257 (2280)
+|.+|-+|++++++.++.+.+...|+|| |+|.|+++|.|.+ |..... .+....++++||++||||++|+|++|+
T Consensus 69 ~g~~v~IG~~~~I~~~~~i~~~~~i~IG-~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv 147 (182)
T 1ocx_A 69 YGYNIFLGNNFFANFDCVMLDVCPIRIG-DNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGV 147 (182)
T ss_dssp SSTTEEECSSEEECSSEEEECSSCEEEC-TTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTC
T ss_pred eCCCEEECCCcEEeCCeEEEeccceEEc-CCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCc
Confidence 3444445699999999899989999999 9999999999998 544311 123346789999999999999999999
Q ss_pred EeCCCceecccceeecc
Q 037878 2258 RIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2258 ~~~~~~~~~~~s~~~~~ 2274 (2280)
+||++++||++|+|+|.
T Consensus 148 ~IG~~~vIgagsvV~~d 164 (182)
T 1ocx_A 148 TIGDNVVVASGAVVTKD 164 (182)
T ss_dssp EECTTCEECTTCEECSC
T ss_pred EECCCCEECCCCEECCc
Confidence 99999999999999986
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9e-11 Score=132.30 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=81.9
Q ss_pred CCcchHHHHHHHhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccC---CCcceEeeeEEEccCe
Q 037878 2171 SGSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEG---DGGKVKFGKIRIGEGG 2245 (2280)
Q Consensus 2171 ~~~~~~~~~~r~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~---~~~~~~~~~~~~~~~~ 2245 (2280)
.++.+...+...+|.++-+|++++|+.++.+.+...|+|| |+|.|+++|.+.+ |.... ..+....++++||++|
T Consensus 61 ~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~i~IG-~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v 139 (188)
T 3srt_A 61 KQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCKIEIG-DNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNV 139 (188)
T ss_dssp SCEEECSCEEESSSTTEEECTTEEECTTEEEECSSCEEEC-SSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSC
T ss_pred CCCEEcCCEEEEeCCCeEECCcccccCceEEecCCceEEC-CeeEECCCcEEeeCCccCchhhccccceECCCcEECCCc
Confidence 3344444333344533335599999999999988999999 9999999999998 44331 1344557899999999
Q ss_pred EEccceeEcCCcEeCCCceecccceeecc
Q 037878 2246 FVGSRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2246 ~~g~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
|||++|+|+||++||++++||++|+|+|.
T Consensus 140 ~IG~~~~I~~gv~IG~~~vIgagsvV~~d 168 (188)
T 3srt_A 140 WIGGGVIITPGITIGDNVVIGAGSVVTKD 168 (188)
T ss_dssp EECTTCEECTTCEECSSEEECTTCEECSC
T ss_pred EEcCCCEECCCcEECCCCEECCCCEECcc
Confidence 99999999999999999999999999985
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-11 Score=162.45 Aligned_cols=75 Identities=11% Similarity=0.203 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1077 MSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1077 ~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
.+.+++|+.|+++|+++||++ +|+.+||||++|||||+|++++++|++ +|+++++.+||++|||++||+++++..
T Consensus 41 ~p~~~~e~~l~~~w~~~l~~~--~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~~ 115 (508)
T 4f6l_B 41 EPSNEIEQTFVDVFGEVLKQN--DVGVDDDFFELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQNQ 115 (508)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCCChHHcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhhc
Confidence 467889999999999999997 899999999999999999999999986 899999999999999999999997643
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-10 Score=110.76 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=71.6
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
+.++++++++++|+++|+++.+.++.+++||++|+|||.+++++..+++.+|++++..++|++||+++|++++.+.
T Consensus 11 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~~l~~~ 86 (88)
T 2afd_A 11 SVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGEL 86 (88)
T ss_dssp SHHHHHHHHHHHHHHHHTSCGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 4678899999999999999878899999999999999999999999999999999999999999999999998753
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=131.40 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=85.8
Q ss_pred HhhhcCCcchHHHHHHHhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccC---CCcceEeeeEE
Q 037878 2166 FVEMTSGSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEG---DGGKVKFGKIR 2240 (2280)
Q Consensus 2166 ~~~~~~~~~~~~~~~r~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~---~~~~~~~~~~~ 2240 (2280)
|.....++.+...+...+|.++-||++++|+.++.+.+...|+|| |+|.|+++|.|.+ |.... ..+....++++
T Consensus 56 ~~~ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~~i~IG-~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~ 134 (195)
T 3nz2_A 56 FGHLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAPITIG-DHVLIGPSTQFYTASHSLDYRRRQAWETICKPIV 134 (195)
T ss_dssp SSEECTTCEECSSEEESCSTTEEECTTCEECTTEEEECSSCEEEC-TTCEECTTCEEECEECCSSGGGTTTCCCEECCEE
T ss_pred HHhcCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCceEEEC-CCCEECCCCEEecCCCCcccccccccceecCCeE
Confidence 334444455554444445544445699999999889889999999 9999999999998 44332 23455678999
Q ss_pred EccCeEEccceeEcCCcEeCCCceecccceeecc
Q 037878 2241 IGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2241 ~~~~~~~g~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
||++||||++|+|+||++||++++||++|+|+|.
T Consensus 135 IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d 168 (195)
T 3nz2_A 135 IEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD 168 (195)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred ECCCCEEcCCCEECCCCEECCCCEECCCCEEccc
Confidence 9999999999999999999999999999999974
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-10 Score=129.99 Aligned_cols=92 Identities=22% Similarity=0.369 Sum_probs=77.1
Q ss_pred HhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccCC---CcceEeeeEEEccCeEEccceeEcCC
Q 037878 2182 LMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEGD---GGKVKFGKIRIGEGGFVGSRAAAMPG 2256 (2280)
Q Consensus 2182 ~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~g 2256 (2280)
.+|.++-+|++++++.++.+.+...|+|| |+|.|+++|.|.+ |..... .+....++++||++||||++|+|+||
T Consensus 70 ~~g~~v~IG~~~~i~~~~~i~~~~~i~IG-~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~g 148 (185)
T 2p2o_A 70 DYGYNIHVGENFFMNFDGVILDVCEVRIG-DHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPG 148 (185)
T ss_dssp SCSTTEEECTTEEECSSEEEECSSCEEEC-TTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTT
T ss_pred EecCCEEECCeeEEcCCeEEEeccceEEC-CCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCC
Confidence 34444446699999998888888999999 9999999999987 554321 12334678999999999999999999
Q ss_pred cEeCCCceecccceeecc
Q 037878 2257 VRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2257 ~~~~~~~~~~~~s~~~~~ 2274 (2280)
++||++++||++|+|+|+
T Consensus 149 v~IG~~~vIgagsvV~~~ 166 (185)
T 2p2o_A 149 VTIGDNAVIASGAVVTKD 166 (185)
T ss_dssp CEECTTCEECTTCEECSC
T ss_pred CEECCCCEECCCCEECCC
Confidence 999999999999999986
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=130.31 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=85.9
Q ss_pred HhhhcC-CcchHHHHHHHhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccC---CCcceEeeeE
Q 037878 2166 FVEMTS-GSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEG---DGGKVKFGKI 2239 (2280)
Q Consensus 2166 ~~~~~~-~~~~~~~~~r~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~---~~~~~~~~~~ 2239 (2280)
|.+... ++.+...+...+|.++-+|++++|+.++.+.+...|+|| |+|.|+++|.|.+ |.... ..+....+++
T Consensus 57 ~~~~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~~v~IG-~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v 135 (190)
T 3hjj_A 57 LGSSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIG-DHCMFAPGVHIYTATHPLHPVERNSGKEYGKPV 135 (190)
T ss_dssp SSEESSSCCEECSSCEESSSTTEEECTTCEECTTCEEECSSCEEEC-TTCEECTTCEEECEECCSSHHHHTSSEEEECCE
T ss_pred hhhcCCCCcEECCCEEEEeCCceEECCceeeCCCeEEEeCCCeEEC-CceEEcCCcEEecCCccCchhhccccccccCCe
Confidence 334444 455555544445544445599999999899888899999 9999999999988 44332 2455667899
Q ss_pred EEccCeEEccceeEcCCcEeCCCceecccceeecc
Q 037878 2240 RIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2240 ~~~~~~~~g~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
+||++||||++|+|+||++||++++||++|+|+|.
T Consensus 136 ~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d 170 (190)
T 3hjj_A 136 KIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD 170 (190)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECcc
Confidence 99999999999999999999999999999999985
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-10 Score=148.63 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=45.9
Q ss_pred eCeEECCCcEEccCCeeCC-------CcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1621 GKVEVQDNSVIGSQSLVLP-------NSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~~-------g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
+.++||++|+||.++++.. +++||+||.||++++|.++-.|++++++.+.-
T Consensus 368 ~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s 425 (456)
T 2v0h_A 368 GDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGT 425 (456)
T ss_dssp ESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTC
T ss_pred cCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCC
Confidence 6789999999999999987 89999999999999999887788988886653
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.8e-10 Score=123.24 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=57.3
Q ss_pred eeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE-ccCc
Q 037878 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL-GALS 1653 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v-g~~s 1653 (2280)
.||+++.|+..+.+. .+.||++|+|+.++.|. +.++||++|+||++++|.+|..|++++++ |..+
T Consensus 73 ~Ig~~~~I~~~~~i~---~~~Ig~~~~Ig~~~~i~-----------~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa 138 (173)
T 1v3w_A 73 EIGEYVTIGHNAMVH---GAKVGNYVIIGISSVIL-----------DGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPG 138 (173)
T ss_dssp EECSSCEECTTCEEE---SCEECSSEEECTTCEEC-----------TTCEECSSEEECTTCEECTTCEECTTEEEEETTE
T ss_pred EECCCCEECCCCEEC---CCEECCCCEECCCCEEe-----------CCCEECCCCEECCCCEECCCcEeCCCcEEECcCC
Confidence 466666666554442 37899999999999885 56899999999999999999999999999 7777
Q ss_pred cccCC
Q 037878 1654 VAPMH 1658 (2280)
Q Consensus 1654 ~v~~~ 1658 (2280)
.+.++
T Consensus 139 ~~~~~ 143 (173)
T 1v3w_A 139 KVVRQ 143 (173)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 77766
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7e-10 Score=134.72 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=42.9
Q ss_pred eCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccC--C--CccCCCcEEecCC
Q 037878 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPM--H--SVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~--~--~~v~~~~~~~G~P 1671 (2280)
++++||+++.||.++.|.++++||++++|+++|.|.. + ..++.+.++.|.|
T Consensus 261 g~~~i~~~~vIGg~a~I~g~v~Ig~~~~I~~~s~v~~~~g~~~~~~g~~~~~g~~ 315 (334)
T 2pig_A 261 GPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGED 315 (334)
T ss_dssp SCEEEESSEEECTTCEEESSEEEESSEEECTTCEEECCTTCCEEEESSEEECTTC
T ss_pred CCeEECCeEEEcCCcEECcCcEECCCcEECCCcEEEEecCCcccccCCcEEcCce
Confidence 4789999999999999999999999999999999862 1 1255667788887
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-10 Score=150.53 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhc
Q 037878 1077 MSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMK 1156 (2280)
Q Consensus 1077 ~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~ 1156 (2280)
.|.+++|+.|+++|+++||++ +|+.+||||+||||||.||++++++++.+|+.+++.+||++||+++||+.++.....
T Consensus 6 ~p~~~~e~~l~~iw~~vL~~~--~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~~~~~~~~~ 83 (520)
T 2jgp_A 6 APRSVWEARLAQVWEQVLNVP--QVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEETAKG 83 (520)
T ss_dssp CCCSHHHHHHHHHHHHHHTCS--CCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHCCTT
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhccc
Confidence 456889999999999999997 899999999999999999999999999999999999999999999999999764321
Q ss_pred cCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhHHHHHHHH
Q 037878 1157 SQPQLMTDSSFTPEPETDFDEFDMEVSKARQCGIWIFQLL 1196 (2280)
Q Consensus 1157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q~~~~~~~~l 1196 (2280)
... ...+. ......|++..|.++|++++.
T Consensus 84 ~~~------~~~~~-----~~~~~~pls~~Q~~~~~~~~~ 112 (520)
T 2jgp_A 84 NVF------SIEPV-----QKQAYYPVSSAQKRMYILDQF 112 (520)
T ss_dssp BTT------CCCCC-----CCCSSEECCHHHHHHHHHHHH
T ss_pred ccC------CCCCC-----CCCCCCCCCHHHHHHHHHHhc
Confidence 111 01111 112235678889999877654
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.00 E-value=9.3e-10 Score=130.03 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGS 1384 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~ 1384 (2280)
..+|++++.|++.... .+.++||++|.|+++|.|.+... .+|+||++|.||++++|.++.
T Consensus 59 ~~~I~~~~~I~~~a~I-~g~v~IG~~~~I~~~~~I~~~~~-------~~i~IG~~~~Ig~~~~I~~~~ 118 (247)
T 1qre_A 59 APVIDPTAYIDPQASV-IGEVTIGANVMVSPMASIRSDEG-------MPIFVGDRSNVQDGVVLHALE 118 (247)
T ss_dssp CCEECTTCEECTTCEE-EESEEECTTCEECTTCEEEESSS-------CCEEECTTCEECTTCEEEECC
T ss_pred CcEECCCcEECCCCEE-eCCcEECCCCEECCCcEEecCCC-------CCEEECCCCEECCCeEEEecc
Confidence 3678888888754331 25688999999999988875531 356777777777777776543
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.7e-10 Score=108.83 Aligned_cols=75 Identities=20% Similarity=0.401 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCc--ccccCcccHHHHHHHHHh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGA--VDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~--~di~~~pti~~LA~~l~~ 1152 (2280)
+.+++++.++++|+++||++++.|+.+++||++|+|||.+++++.++++.+|++++. .++|++||+++|++++.+
T Consensus 8 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~l~~ 84 (89)
T 2kr5_A 8 VSNEKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLG 84 (89)
T ss_dssp CCHHHHHHHHHHHHHHHCCCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHCcCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHHHHH
Confidence 457889999999999999988899999999999999999999999999999999999 999999999999999975
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=141.85 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=54.9
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCCCcEEccCccccCCCccCCCcE
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSRDVILGALSVAPMHSVLQRGGI 1666 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~~~~vg~~s~v~~~~~v~~~~~ 1666 (2280)
+.||+++.+++.+.+ +.+.||++|+||+++++.. +++||++|+||++++|.++-.|.+|++
T Consensus 356 ~~i~~~~~i~~~~~i------------~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~ 423 (459)
T 4fce_A 356 ARLGKGSKAGHLSYL------------GDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGAT 423 (459)
T ss_dssp EEECTTCEEEEEEEE------------EEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCE
T ss_pred eEEcCCCEECCceEE------------CCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCE
Confidence 567777777666666 6689999999999999976 799999999999999999988899888
Q ss_pred EecC
Q 037878 1667 YIGS 1670 (2280)
Q Consensus 1667 ~~G~ 1670 (2280)
..+.
T Consensus 424 igag 427 (459)
T 4fce_A 424 IGAG 427 (459)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 8554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=121.11 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=57.1
Q ss_pred eeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE-ccCc
Q 037878 1575 KIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL-GALS 1653 (2280)
Q Consensus 1575 ~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v-g~~s 1653 (2280)
.||++|.|+..+.+. .+.|||+|+|+.++.|. +.++||++|+||++++|.++..|++++++ |..+
T Consensus 75 ~Ig~~~~Ig~~~~i~---~~~Ig~~~~Ig~~~~i~-----------~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa 140 (173)
T 1xhd_A 75 ILEDDVTVGHQVILH---SCHIKKDALIGMGSIIL-----------DGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPA 140 (173)
T ss_dssp EECTTCEECTTCEEE---SCEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTEEEEETTE
T ss_pred EECCCCEECCCCEEe---CCEECCCCEEcCCCEEc-----------CCCEECCCCEECCCCEECCCcEeCCCCEEECCCC
Confidence 466666666554333 27899999999999884 56899999999999999999999999999 7667
Q ss_pred cccCC
Q 037878 1654 VAPMH 1658 (2280)
Q Consensus 1654 ~v~~~ 1658 (2280)
.+.++
T Consensus 141 ~~~~~ 145 (173)
T 1xhd_A 141 KVIRE 145 (173)
T ss_dssp EEEEE
T ss_pred EECCC
Confidence 77766
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-09 Score=122.21 Aligned_cols=72 Identities=10% Similarity=0.054 Sum_probs=61.2
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~ 1652 (2280)
++.||+++.|+..+.+. .++||++|+|+.++.|. ..++||++|+||++++|.++++|+++++|+..
T Consensus 85 ~~~Ig~~~~i~~~~~i~---~~~Ig~~~~Ig~~~~I~-----------~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~ 150 (194)
T 3tv0_A 85 PMIIGTNNVFEVGCYSQ---AMKMGDNNVIESKAYVG-----------RNVILTSGCIIGACCNLNTFEVIPENTVIYGA 150 (194)
T ss_dssp CEEECSSCEECTTCEEC---CSEECSSCEECTTCEEC-----------TTEEECSSCEECTTCEECCCEEECTTEEEEST
T ss_pred ceEECCcceEecceeEe---eeeecccceecceeeEC-----------CeEEECCCCEECCCCEECCCcEECCCCEEECC
Confidence 36799999998765444 38999999999999995 67899999999999999999999999999877
Q ss_pred ccccCC
Q 037878 1653 SVAPMH 1658 (2280)
Q Consensus 1653 s~v~~~ 1658 (2280)
....+.
T Consensus 151 pa~~~~ 156 (194)
T 3tv0_A 151 DCLRRV 156 (194)
T ss_dssp TCCEEE
T ss_pred CcEEee
Confidence 765443
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=127.26 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=69.6
Q ss_pred HHHcCCEECCCcEECccccCC-CCceEECCCCEeCCCCEEeeccccCCc---eeecCEEECCCcEECCCCEECCCCEECC
Q 037878 1313 FEMLGAKLGSSVLLDTVDITD-PSLVLIGDGAVISEGALIQSHEVKNGV---LSFQPIKIARKVSVGPYAVIQKGSVIGE 1388 (2280)
Q Consensus 1313 ~R~lGa~Ig~~v~i~~~~~~~-~~~~~IG~~~~I~~~~~l~~~~~~~~~---~~~~~i~Ig~~~~iG~~~~i~pg~~ig~ 1388 (2280)
....|+.||+++.|+.....+ ...+.||++|.||++|.|......++. -..++++||+||+||++|+|.+|++||+
T Consensus 160 ~~~~gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~ 239 (287)
T 3mc4_A 160 SSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQ 239 (287)
T ss_dssp HHHTCCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECT
T ss_pred eeccCeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECC
Confidence 344576666666665432211 234555665555555555433322111 1124689999999999999999999999
Q ss_pred CCEECcCCcc----CCCCccccCCCceeecc
Q 037878 1389 EAEVAPLQKS----EGGKPILKSTNANYVQK 1415 (2280)
Q Consensus 1389 ~a~ig~~s~v----~~~~~~~~g~p~~~~~~ 1415 (2280)
||+||++|+| ++++.+ .|+|++....
T Consensus 240 ~a~IGagsvV~kdVp~~svv-vG~PAkii~~ 269 (287)
T 3mc4_A 240 CSKIAAGSVVLKSVPHNVTV-AGVPARIIGE 269 (287)
T ss_dssp TCEECTTCEECSCBCTTEEE-ETTTTEEEEE
T ss_pred CCEECCCCEEccccCCCCEE-EccCCEEeCc
Confidence 9999999988 677777 8999998743
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-10 Score=110.76 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHhC-CCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1079 NKDIVEFLKGLVSEQTG-IPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg-~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.+.+++.++++|+++|| .+++.|+.+++||++|+|||.++++.+.+++.+|++++..++|++||+++|++++.+.
T Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~ 93 (95)
T 2ju1_A 18 TAELVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAE 93 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHH
Confidence 46678999999999999 6777899999999999999999999999999999999999999999999999998753
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=121.85 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=54.7
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEE-ccC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVIL-GAL 1652 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~v-g~~ 1652 (2280)
+.||++|.|+.++.+.. ++||++|+|+.++.|. ..++||++|+||++++|.+|..|++++++ |..
T Consensus 96 ~~Ig~~~~Ig~~~~i~~---~~Ig~~~~Ig~~~~I~-----------~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~p 161 (191)
T 3ixc_A 96 TVIGKFVTIGHSCILHA---CTLGNNAFVGMGSIVM-----------DRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRP 161 (191)
T ss_dssp EEECTTCEECTTCEECS---CEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTEEEEETT
T ss_pred eEECCCCEECCCCEEEC---CEECCCCEECCCCEEe-----------CCeEECCCCEECCCCEECCCcCcCCCeEEECcC
Confidence 35666666666543332 7899999999999885 45799999999999999999999999985 444
Q ss_pred ccccCC
Q 037878 1653 SVAPMH 1658 (2280)
Q Consensus 1653 s~v~~~ 1658 (2280)
+.+.++
T Consensus 162 a~~i~~ 167 (191)
T 3ixc_A 162 AKFLRM 167 (191)
T ss_dssp EEEEEE
T ss_pred ceeccc
Confidence 444444
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.1e-09 Score=118.73 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=55.4
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
+.||++|.|+..+.+.. ++||++|+|+.++.|. +.++||++|+||++++|.+|..|+++++++
T Consensus 88 ~~Ig~~~~Ig~~~~i~~---~~Ig~~~~Ig~~~~i~-----------~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~ 150 (189)
T 3r1w_A 88 LIIGDDVTIGHQAMLHG---CTIGNRVLIGMKSMIM-----------DGAIVEDEVIVAAGATVSPGKVLESGFVYM 150 (189)
T ss_dssp EEECSSEEECTTCEEES---CEECSSEEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECTTEEEE
T ss_pred eEECCCCEECCCCEEeC---cEECCCcEECCCCEEc-----------CCCEECCCCEEccCCEECCCCEeCCCCEEE
Confidence 57999999988765543 8999999999999985 678999999999999999999999999984
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-09 Score=136.72 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=52.4
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCCCcEEccCccccCCCccCCCcE
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSRDVILGALSVAPMHSVLQRGGI 1666 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~~~~vg~~s~v~~~~~v~~~~~ 1666 (2280)
+.||+++.|++.+.+ +.+.||++|+||.++++.. +++||++|.||++++|..+-.|.+|++
T Consensus 361 ~~Ig~~~~i~~~~~i------------~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~ 428 (468)
T 1hm9_A 361 SSIGENTKAGHLTYI------------GNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSL 428 (468)
T ss_dssp CEECTTCEEEEEEEE------------ESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCE
T ss_pred eEEcCCcEeCCceEE------------ccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCE
Confidence 566777666666555 6789999999999999977 799999999999999988877888888
Q ss_pred Eec
Q 037878 1667 YIG 1669 (2280)
Q Consensus 1667 ~~G 1669 (2280)
+.+
T Consensus 429 i~~ 431 (468)
T 1hm9_A 429 VGA 431 (468)
T ss_dssp ECT
T ss_pred ECC
Confidence 644
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-09 Score=120.41 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=75.3
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceee----------------------cCEEECCCcEE
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF----------------------QPIKIARKVSV 1374 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~----------------------~~i~Ig~~~~i 1374 (2280)
+++||+++.|+..... ...++||++|.|++++.|.++...++...+ ++++||++|+|
T Consensus 33 ~~~IG~~~~Ig~~~~I-~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~I 111 (192)
T 3mqg_A 33 GAEIGEGCSLGQNVFV-GNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATL 111 (192)
T ss_dssp TCEECTTCEECTTCEE-CSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEE
T ss_pred CcEECCCCEECCCEEE-CCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEE
Confidence 5778888888654432 244778888888888887655544433332 67999999999
Q ss_pred CCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1375 GPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1375 G~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
|++++|.+|++||++++||++|+| ++++.+ .|+||+...
T Consensus 112 G~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~-~G~PAk~i~ 154 (192)
T 3mqg_A 112 GANCTVVCGATIGRYAFVGAGAVVNKDVPDFALV-VGVPARQIG 154 (192)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-ETTTTEEEE
T ss_pred CCCCEECCCCEECCCCEEcCCCEECcccCCCCEE-EccCCEEEE
Confidence 999999999999999999999998 677777 899999864
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=107.73 Aligned_cols=77 Identities=16% Similarity=0.287 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
..++++++++++|+++|+++.+.|+.+++||++|+|||.++++...+++.+|+.++..++|++||+++|++++.+..
T Consensus 18 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~~ 94 (99)
T 2liu_A 18 NLSEIKQVLKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQIL 94 (99)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence 56788999999999999998889999999999999999999999999999999999999999999999999987654
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=122.64 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=77.0
Q ss_pred CCEECCCcEECccc---------------cCCCCceEECCCCEeCCCCEEee-----cccc-------------------
Q 037878 1317 GAKLGSSVLLDTVD---------------ITDPSLVLIGDGAVISEGALIQS-----HEVK------------------- 1357 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~---------------~~~~~~~~IG~~~~I~~~~~l~~-----~~~~------------------- 1357 (2280)
++.||+++.|+... ....+.++||++|.|+++|.|.. |..+
T Consensus 24 ~v~IG~~t~I~~~~~~~~~~~~~~~i~~~~~i~~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~ 103 (212)
T 3eev_A 24 NIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADAR 103 (212)
T ss_dssp TEEECSSCEECCGGGCSCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCC
T ss_pred CeEECCCeEEccccCccccccceeEECCCccccCCcEECCCCEECCCCEEEeCCCCcccccceeeccceeeccccccccc
Confidence 78899999986211 01225789999999999998832 3322
Q ss_pred CCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1358 NGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1358 ~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
.+....++++||++|+||++|+|.+|++||+||+||++|+| ++++.+ .|+||+...
T Consensus 104 ~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~vv-~G~PAk~i~ 163 (212)
T 3eev_A 104 DGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVV-GSNPAKHIK 163 (212)
T ss_dssp CCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-ETTTTEEEE
T ss_pred CCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEE-EecCCEEEe
Confidence 22234578999999999999999999999999999999998 778877 899999763
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-09 Score=135.21 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=56.1
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeC--CCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVL--PNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~--~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
++||++|+||++|.|.... ..+++||++|+||++++|. +|..|+++++++ ++ +.....++.++.+.|.|
T Consensus 343 v~IGd~v~IG~~a~I~~~~-------~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~-G~-v~~~~~l~~~~~~~~~~ 413 (496)
T 3c8v_A 343 AHLGDMIFTGFNSFLQGSE-------SSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVW-GY-IRNKADLAAHSISFEEF 413 (496)
T ss_dssp EEEEETCEECTTCEEECCS-------SSCEEECTTCEECTTCEEECSSCEEECSSEEEC-SE-ESSHHHHHHSEEEHHHH
T ss_pred ceECCCcEECCCCEEeCCC-------CcceEECCCCEECCCCEEecCCCcEeCCCCEEE-EE-eccCccccccccccccH
Confidence 7888889998888884221 1348999999999999999 999999999998 55 44443478889999999
Q ss_pred Cc
Q 037878 1672 SP 1673 (2280)
Q Consensus 1672 a~ 1673 (2280)
+.
T Consensus 414 ~~ 415 (496)
T 3c8v_A 414 AK 415 (496)
T ss_dssp TT
T ss_pred HH
Confidence 63
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=124.91 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=65.5
Q ss_pred CCEECCCcEECc-cccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcC
Q 037878 1317 GAKLGSSVLLDT-VDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPL 1395 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~-~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~ 1395 (2280)
+|+||+++.|+. ..+.....++||+||.|+++|.|++..... ..++++||++|+||++|+|.+|++||+||+||++
T Consensus 163 ~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~---~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGag 239 (289)
T 1t3d_A 163 AAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSG---GDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAG 239 (289)
T ss_dssp TCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSC---SSCSCEECTTCEECTTCEEESSCEECTTCEECTT
T ss_pred CCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCcccc---CCCCeEECCCeEECCCCEEecCcEECCCCEECCC
Confidence 456666666642 111122344555555555555555432211 1356899999999999999999999999999999
Q ss_pred Ccc----CCCCccccCCCceeec
Q 037878 1396 QKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1396 s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
|+| ++++.+ .|+|++...
T Consensus 240 svV~~dVp~~s~v-~G~PAr~i~ 261 (289)
T 1t3d_A 240 SVVLQPVPPHTTA-AGVPARIVG 261 (289)
T ss_dssp CEECSCBCTTCEE-ETTTTEEEE
T ss_pred CEEccCCCCCCEE-EecCCEEeC
Confidence 988 778887 899999764
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-09 Score=124.08 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCEECCCcEECc-cccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcC
Q 037878 1317 GAKLGSSVLLDT-VDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPL 1395 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~-~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~ 1395 (2280)
+|+||+++.|+. ..+.....++||++|.|+++|+|++..... ..++++||++|+||++|+|.+|++||+||+||++
T Consensus 143 ~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~---~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGag 219 (267)
T 1ssq_A 143 AAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKES---GDRHPKVREGVMIGAGAKILGNIEVGKYAKIGAN 219 (267)
T ss_dssp TCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSC---SSCSCEECTTCEECTTCEEESSCEECTTCEECTT
T ss_pred CCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccC---CCCCeEECCCeEEcCCCEEeCCcEECCCCEECCC
Confidence 466666666642 111122345566666666666665543221 1356899999999999999999999999999999
Q ss_pred Ccc----CCCCccccCCCceeec
Q 037878 1396 QKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1396 s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
|+| ++++.+ .|+|++...
T Consensus 220 svV~~dVp~~~~v-~G~PAr~i~ 241 (267)
T 1ssq_A 220 SVVLNPVPEYATA-AGVPARIVS 241 (267)
T ss_dssp CEECSCBCTTCEE-ETTTTEECC
T ss_pred CEEccCCCCCCEE-EecCcEEec
Confidence 988 778887 799999764
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=120.99 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=53.8
Q ss_pred ceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCc-------EEccCcccc-CCCccCCC
Q 037878 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDV-------ILGALSVAP-MHSVLQRG 1664 (2280)
Q Consensus 1593 ~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~-------~vg~~s~v~-~~~~v~~~ 1664 (2280)
.++|||+|+||.+|.|. ..++||++|+||++++|.++++|++++ .|.++|+|. .+-+.|.|
T Consensus 177 ~v~IGd~v~IG~~a~I~-----------~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P~~~g 245 (276)
T 3gos_A 177 PTIIEDNCFVGARSEVV-----------EGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDG 245 (276)
T ss_dssp CCEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTS
T ss_pred CeEECCCCEECCCCEEC-----------CCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCccCCCC
Confidence 46777777778787774 567899999999999999999888888 888888884 43122344
Q ss_pred cEEecCCCceeeecccc
Q 037878 1665 GIYIGSQSPVMIKNTMH 1681 (2280)
Q Consensus 1665 ~~~~G~Pa~~~~~~~~~ 1681 (2280)
. +.+.+ +++.++...
T Consensus 246 ~-~~~~~-A~iik~~~~ 260 (276)
T 3gos_A 246 S-YSLYC-AVIVKKVDA 260 (276)
T ss_dssp S-CEEEE-EEEEEECCC
T ss_pred c-ccccc-cEEEEEcCh
Confidence 3 44444 555555543
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-09 Score=116.75 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=57.8
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc-cC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG-AL 1652 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg-~~ 1652 (2280)
+.||++|.|+..+.+.. ++||++|+|+.++.|. +.++||++|+||++++|.+|..|+++++++ .-
T Consensus 84 ~~Ig~~~~Ig~~~~i~~---~~Ig~~~~Ig~~~~I~-----------~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~p 149 (187)
T 3r3r_A 84 LIIGEDVTVGHKVMLHG---CTIGNRVLVGMGSIVL-----------DGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSP 149 (187)
T ss_dssp EEECSSCEECTTCEEES---CEECSSEEECTTCEEC-----------TTCEECSSEEECTTCEECTTCEECTTEEEETTT
T ss_pred eEECCCCEECCCCEEeC---cEECCCCEECCCCEEC-----------CCCEECCCCEECCCCEECCCcCcCCCcEEEecC
Confidence 57899999988765533 8999999999999984 568999999999999999999999999854 44
Q ss_pred ccccCC
Q 037878 1653 SVAPMH 1658 (2280)
Q Consensus 1653 s~v~~~ 1658 (2280)
+.+.++
T Consensus 150 a~~i~~ 155 (187)
T 3r3r_A 150 VKQIRP 155 (187)
T ss_dssp TEEEEE
T ss_pred CeEcCc
Confidence 444433
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-09 Score=134.50 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=69.7
Q ss_pred CChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1077 MSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1077 ~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.+.+++|+.|+++|+++||++ .|+.++|||++|||||+|++++++|++.+|+++++.++|++||+++||+++++.
T Consensus 7 ~p~~~~e~~l~~~~~~~l~~~--~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~~~~~~ 81 (329)
T 3tej_A 7 APKAGSETIIAAAFSSLLGCD--VQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAE 81 (329)
T ss_dssp CCCTTHHHHHHHHHHHHHTC---CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHhh
Confidence 356789999999999999997 699999999999999999999999999999999999999999999999999753
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-09 Score=134.82 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=60.2
Q ss_pred ceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCC----cEeCCCcEEccCcccc--CCCccCCCcE
Q 037878 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPN----SVVSRDVILGALSVAP--MHSVLQRGGI 1666 (2280)
Q Consensus 1593 ~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g----~~ig~~~~vg~~s~v~--~~~~v~~~~~ 1666 (2280)
.++||++|.|++++.| ..++||++|+||.+|+|.++ ++||++|+||++|+|. .+..||+++.
T Consensus 325 ~~vIG~~~~Ig~~a~I------------~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~ 392 (496)
T 3c8v_A 325 NSRLERNCVTAHGGKI------------INAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHL 392 (496)
T ss_dssp EEEEEESCEECTTCEE------------ESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred ceEeCCCCEECCCcEE------------cCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence 3788888999988888 34899999999999999999 9999999999999999 5555999999
Q ss_pred EecCC
Q 037878 1667 YIGSQ 1671 (2280)
Q Consensus 1667 ~~G~P 1671 (2280)
+.|+.
T Consensus 393 v~G~v 397 (496)
T 3c8v_A 393 VWGYI 397 (496)
T ss_dssp ECSEE
T ss_pred EEEEe
Confidence 99985
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-09 Score=120.35 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=76.1
Q ss_pred cCCEECCCcEEC-------------ccccCCCCceEECCCCEeCCCCEE----eeccccCCc------------------
Q 037878 1316 LGAKLGSSVLLD-------------TVDITDPSLVLIGDGAVISEGALI----QSHEVKNGV------------------ 1360 (2280)
Q Consensus 1316 lGa~Ig~~v~i~-------------~~~~~~~~~~~IG~~~~I~~~~~l----~~~~~~~~~------------------ 1360 (2280)
-+++||++++|+ .... ..+.++||++|.|+++|.| .+|.+++..
T Consensus 34 ~~v~IG~~t~i~~~~~~~~~~~vI~~~~~-Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (220)
T 4hur_A 34 ENILVGEYSYYDSKRGESFEDQVLYHYEV-IGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLK 112 (220)
T ss_dssp TTEEECTTCEEECSSSCCGGGGEESCCTT-TCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGG
T ss_pred CCEEECCCeEECCcCCcccCCeEEeCCCE-ECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecccccccccccc
Confidence 467888888762 1111 2357899999999999997 344444321
Q ss_pred --eeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1361 --LSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1361 --~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
...++++||++|+||++|+|.+|++||+||+||++|+| ++++.+ .|+||+..+
T Consensus 113 ~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv-~G~PAk~ir 171 (220)
T 4hur_A 113 DLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIV-GGNPLKFIR 171 (220)
T ss_dssp GSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-ETTTTEEEE
T ss_pred cccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEE-eCCCCEeeh
Confidence 14578999999999999999999999999999999999 677777 899999764
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=123.00 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=41.1
Q ss_pred cceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEe
Q 037878 1592 QQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYI 1668 (2280)
Q Consensus 1592 ~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~ 1668 (2280)
+.+.|||+|+||.+|.|. ..++||++|+||++++|.+|++|+++++ ++.+.++ ||+++++.
T Consensus 201 ~~v~IGd~v~IG~~a~I~-----------~gv~IG~~avIgagsvV~~g~~Igd~~~---g~~~~~~--Ip~~svV~ 261 (304)
T 3eg4_A 201 GPTIIEDNCFIGARSEVV-----------EGCIVREGSVLGMGVFIGKSTKIVDRAT---GEVFYGE--VPPYSVVV 261 (304)
T ss_dssp CCCEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCCEEETTT---CCEECSE--ECTTEEEE
T ss_pred CCeEEcCCCEECCCCEEc-----------CCcEECCCcEECCCCEEcCCeEECccce---eeeccCE--eCCCCEEe
Confidence 357888888888888774 5678888888888888888775555442 2233334 56666655
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-08 Score=128.58 Aligned_cols=63 Identities=19% Similarity=0.392 Sum_probs=52.5
Q ss_pred CEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCc
Q 037878 1318 AKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQK 1397 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~ 1397 (2280)
..|+.++.+.. .+.||++|.|++++.|. +++.||++|.||++++|.++++||+++.||+++.
T Consensus 233 ~~i~~~~~i~~-------~~~ig~~~~I~~~~~i~-----------~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~ 294 (401)
T 2ggo_A 233 GNVEDNVKIKG-------KVIIEEDAEIKSGTYIE-----------GPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVE 294 (401)
T ss_dssp SEECSSCEEES-------CEEECTTCEECTTCEEE-----------SSEEECTTCEECSSCEECTTEEECSSCEEEETCE
T ss_pred ceeCCCCEEcC-------CeEEcCCCEECCCCEEe-----------CCeEECCCCEECCCCEEcCCcEECCCCEECCCCE
Confidence 45666666543 46799999999999887 4678999999999999999999999999999776
Q ss_pred c
Q 037878 1398 S 1398 (2280)
Q Consensus 1398 v 1398 (2280)
|
T Consensus 295 i 295 (401)
T 2ggo_A 295 V 295 (401)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=98.29 Aligned_cols=75 Identities=11% Similarity=0.183 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.+++++.++++|+++|+++++.|+.+++|| ++|+|||.++++...++++||++++..++++++|+++|++++.+.
T Consensus 4 ~~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 79 (81)
T 2lol_A 4 TDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKER 79 (81)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 467889999999999999888999999997 999999999999999999999999999999999999999998753
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=116.03 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=79.7
Q ss_pred HHHcCCEECCCcEECcc----c-----c------CCCCceEECCCCEeCCCCEEe--e---cccc---------------
Q 037878 1313 FEMLGAKLGSSVLLDTV----D-----I------TDPSLVLIGDGAVISEGALIQ--S---HEVK--------------- 1357 (2280)
Q Consensus 1313 ~R~lGa~Ig~~v~i~~~----~-----~------~~~~~~~IG~~~~I~~~~~l~--~---~~~~--------------- 1357 (2280)
.+.-+.+||++++|+.. . . .+.+.++||++|.|+++|.|. + |..+
T Consensus 18 ~~~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~ 97 (212)
T 1xat_A 18 VSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPA 97 (212)
T ss_dssp CCCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGG
T ss_pred cccCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeeccccc
Confidence 35568899999999741 1 0 024789999999999999983 2 4321
Q ss_pred -----CCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1358 -----NGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1358 -----~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
.+....++++||++|+||.+|+|.+|++||+||+||++|+| ++++.+ .|+|++..+
T Consensus 98 ~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~~-~G~Pa~~i~ 162 (212)
T 1xat_A 98 FAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIV-GGNPARTIR 162 (212)
T ss_dssp GGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-ETTTTEEEE
T ss_pred ccccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcEE-EccCCEEEc
Confidence 11234578999999999999999999999999999999998 677777 799999764
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=120.77 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=62.0
Q ss_pred CEECCCcEEC-ccccCCCCceEECCCCEeCCCCEEeeccccCC----c--eeecCEEECCCcEECCCCEECCCCEECCCC
Q 037878 1318 AKLGSSVLLD-TVDITDPSLVLIGDGAVISEGALIQSHEVKNG----V--LSFQPIKIARKVSVGPYAVIQKGSVIGEEA 1390 (2280)
Q Consensus 1318 a~Ig~~v~i~-~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~----~--~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a 1390 (2280)
|+||+++.|+ .......+.++||++|.|+++|.|++....-+ . -..++++||++|+||++|+|.+|++||+||
T Consensus 197 a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~gv~IGd~a 276 (310)
T 3f1x_A 197 AQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGA 276 (310)
T ss_dssp CEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred CEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECCCcEECCCC
Confidence 4455555551 11111223456666666666666655442110 0 123566999999999999999999999999
Q ss_pred EECcCCcc----CCCCccccCCCceee
Q 037878 1391 EVAPLQKS----EGGKPILKSTNANYV 1413 (2280)
Q Consensus 1391 ~ig~~s~v----~~~~~~~~g~p~~~~ 1413 (2280)
+||++|+| ++++.+ .|+|++..
T Consensus 277 ~IGagsvV~~dVp~~svv-~GnPAk~~ 302 (310)
T 3f1x_A 277 TVGGNIWVTENVPAGSRI-VQRKNKDE 302 (310)
T ss_dssp EECSSCEECSCBCTTCEE-CCCCCC--
T ss_pred EECCCCEECCccCCCcEE-ECCCcccC
Confidence 99999998 778888 88998865
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.8e-10 Score=139.32 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=42.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEe
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE 65 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~ 65 (2280)
..+.||+|||||++||+||++|+++|. +|+|+|+++++||++++..
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~ 72 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQ-RVLIVDRRPHIGGNAYDCY 72 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSGGGCCEE
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC-ceEEEeccCCCCCccceee
Confidence 456799999999999999999999998 6999999999999999876
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=7.1e-09 Score=119.11 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=46.2
Q ss_pred ecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1363 FQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1363 ~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
.++++||++|+||++|+|.+|++||++|+||++|+| ++++.+ .|+||+...
T Consensus 132 ~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v~-~G~Pa~~i~ 186 (205)
T 3vbi_A 132 TGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIY-VGVPVRKIK 186 (205)
T ss_dssp ECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSCBCTTEEE-ETTTTEEEE
T ss_pred cCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeEE-EccCCEEee
Confidence 578999999999999999999999999999999999 667777 799998763
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.1e-09 Score=98.26 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
+++++++++|+++++++++.++.+++|| ++|+|||.++++...+++.||++++..++++++|+++|++++.+
T Consensus 3 ~i~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~ 75 (78)
T 1l0i_A 3 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYING 75 (78)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999888999999998 99999999999999999999999999999999999999999875
|
| >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-08 Score=96.91 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
..+++++++.++|+++++++++.++.+++|| ++|+|||.++++...+++.||+.++..++++++|+++|++++.+
T Consensus 4 ~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 79 (82)
T 2cnr_A 4 TQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILD 79 (82)
T ss_dssp CHHHHHHHHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHH
Confidence 4577889999999999999888999999997 99999999999999999999999999999999999999999875
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=115.44 Aligned_cols=77 Identities=10% Similarity=0.217 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVM 1155 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~ 1155 (2280)
.++++++|+++|+++|++++++|+.+++||+||+|||.+++++.+|++.+|++++..++|++||+++|++++.....
T Consensus 24 ~~~i~~~l~~~~a~~l~~~~~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~l~~~~~~~~~Ti~~la~~l~~~~~ 100 (212)
T 2l22_A 24 DDECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQLQ 100 (212)
T ss_dssp TTHHHHHHHHHHHHHTTCCTTSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCCCCTTHHHHCCBHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHhcc
Confidence 56789999999999999988899999999999999999999999999999999999999999999999999986543
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=115.45 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=77.2
Q ss_pred CCEECCCcEECccc------------cCCCCceEECCCCEeCCCCEEe----eccccC--------------------Cc
Q 037878 1317 GAKLGSSVLLDTVD------------ITDPSLVLIGDGAVISEGALIQ----SHEVKN--------------------GV 1360 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~------------~~~~~~~~IG~~~~I~~~~~l~----~~~~~~--------------------~~ 1360 (2280)
++.||++++|+... ....+.++||++|.|+++|.|. +|.+.+ +.
T Consensus 34 ~i~IG~~t~i~~~~~~~~~~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~ 113 (219)
T 4e8l_A 34 NILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDL 113 (219)
T ss_dssp SEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTS
T ss_pred CEEECCccEEcCCcCceecceEEeecceeCCCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccc
Confidence 67889998886420 1124679999999999999995 344332 12
Q ss_pred eeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1361 LSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1361 ~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
...++++||++|+||++|+|.+|++||++|+||++|+| ++++.+ .|+||+...
T Consensus 114 ~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~-~G~Pa~~i~ 170 (219)
T 4e8l_A 114 PLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIV-GGNPLKFIR 170 (219)
T ss_dssp CCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-ETTTTEEEE
T ss_pred cccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEE-EecCCEeec
Confidence 33578999999999999999999999999999999998 677777 799998763
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-09 Score=97.55 Aligned_cols=72 Identities=19% Similarity=0.352 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1082 IVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
+++.++++|+++++++++.++.+++| +++|+|||.++++...+++.+|++++..++++++|+++|++++.+.
T Consensus 2 i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~~i~~~ 74 (77)
T 2ehs_A 2 LEERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEK 74 (77)
T ss_dssp HHHHHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHHHHHHH
Confidence 56789999999999988889999999 9999999999999999999999999999999999999999999764
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=98.38 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHhCCCCc-cccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1080 KDIVEFLKGLVSEQTGIPIT-KVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1080 ~~~e~~l~~iw~~vLg~~~~-~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
+++++.++++|+++|+++++ .|+++++|+++|+|||.++++...+++.||+.++..++++++|+++|++++.+..
T Consensus 3 ~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 78 (82)
T 2ava_A 3 KETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLL 78 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHH
Confidence 57889999999999999876 8999999999999999999999999999999999999999999999999997654
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-08 Score=119.33 Aligned_cols=101 Identities=9% Similarity=0.124 Sum_probs=59.8
Q ss_pred HcCCEECCCcEECccc-c------CCCCceEECCCCEeCCCCEEeeccccCCceee-----cCEEECCCcEECCCCEECC
Q 037878 1315 MLGAKLGSSVLLDTVD-I------TDPSLVLIGDGAVISEGALIQSHEVKNGVLSF-----QPIKIARKVSVGPYAVIQK 1382 (2280)
Q Consensus 1315 ~lGa~Ig~~v~i~~~~-~------~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~-----~~i~Ig~~~~iG~~~~i~p 1382 (2280)
..|+.||+++.|+... + ..-+.++||++|.|+++|.|++....+....+ +.++||++|+||++|+|.+
T Consensus 161 ~~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilg 240 (313)
T 3q1x_A 161 YTSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLG 240 (313)
T ss_dssp HHCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEES
T ss_pred cCCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECC
Confidence 3555555555554322 1 12234555555555555555554433322222 3569999999999999999
Q ss_pred CCEECCCCEECcCCcc----CCCCccc-cCCCceeecc
Q 037878 1383 GSVIGEEAEVAPLQKS----EGGKPIL-KSTNANYVQK 1415 (2280)
Q Consensus 1383 g~~ig~~a~ig~~s~v----~~~~~~~-~g~p~~~~~~ 1415 (2280)
|++||+||+||++|+| ++++.+. +|+|++...+
T Consensus 241 gv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~ 278 (313)
T 3q1x_A 241 NIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKP 278 (313)
T ss_dssp SCEECSSEEECTTCEECSCBCSSEEC------------
T ss_pred CcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEee
Confidence 9999999999999999 6777774 3899987643
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=116.25 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=73.3
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeec-------CEEECCCcEECCCCEECCCCEECCC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQ-------PIKIARKVSVGPYAVIQKGSVIGEE 1389 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~-------~i~Ig~~~~iG~~~~i~pg~~ig~~ 1389 (2280)
+++||+++.|....... ..++||++|.|++++.|......++..+++ +++||++|+||++|+|.+|++||++
T Consensus 111 ~v~IG~g~~I~~~~~i~-~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~ 189 (220)
T 4ea9_A 111 SVRLGEGVAVMAGVAIN-ADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGAD 189 (220)
T ss_dssp TCEECSSCEECTTCEEC-TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred CCEECCCCEEcCCCEEC-CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCC
Confidence 46788888886544322 347788888888888776555555444444 4999999999999999999999999
Q ss_pred CEECcCCcc----CCCCccccCCCce
Q 037878 1390 AEVAPLQKS----EGGKPILKSTNAN 1411 (2280)
Q Consensus 1390 a~ig~~s~v----~~~~~~~~g~p~~ 1411 (2280)
++||++|+| ++++.+ .|+||+
T Consensus 190 ~~igagsvv~~~v~~~~~~-~G~Pa~ 214 (220)
T 4ea9_A 190 TIVGAGGVVVRDLPDSVLA-IGVPAK 214 (220)
T ss_dssp CEECTTCEECSCBCTTCEE-ETTTTE
T ss_pred CEECCCCEEccccCCCcEE-EEeCCE
Confidence 999999998 677777 799998
|
| >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=96.13 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.++++++++++|+++++++++.++.+++| +++|+|||.++++...+++.||+.++..++++++|+++|++++.+.
T Consensus 3 ~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 78 (80)
T 1x3o_A 3 EQEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAK 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999999988889999999 9999999999999999999999999999999999999999998763
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.9e-08 Score=115.81 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=30.6
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCc-------EEccCccc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDV-------ILGALSVA 1655 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~-------~vg~~s~v 1655 (2280)
++|||+|+||.+|.|. ..++||++|+||++++|..+++|++.+ .|+++|+|
T Consensus 219 v~IGd~v~IG~~a~I~-----------~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvV 276 (316)
T 3tk8_A 219 VIIEDNCFIGARSEVV-----------EGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVV 276 (316)
T ss_dssp CEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEE
T ss_pred cEECCCCEECCCCEEc-----------CCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEE
Confidence 4555555555555553 345667777777777777766555555 55555555
|
| >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-08 Score=97.90 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1077 MSNKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1077 ~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
...++++++|.++|+++++++++.|+.+++|| ++|+|||.++++...|+++||++++..++++++|+++|++++.+..
T Consensus 11 m~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 89 (99)
T 2dnw_A 11 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKK 89 (99)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHHh
Confidence 34678999999999999999888999999997 9999999999999999999999999999999999999999998754
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-08 Score=114.02 Aligned_cols=98 Identities=16% Similarity=0.252 Sum_probs=74.0
Q ss_pred CEECCCcEECccccC--CCCceEECCCCEeCCCCEEeecc---cc-----CCceeecCEEECCCcEECCCCEECCCCEEC
Q 037878 1318 AKLGSSVLLDTVDIT--DPSLVLIGDGAVISEGALIQSHE---VK-----NGVLSFQPIKIARKVSVGPYAVIQKGSVIG 1387 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~~~--~~~~~~IG~~~~I~~~~~l~~~~---~~-----~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig 1387 (2280)
.+||++|.|+...+. +...++||++|.|+++|.|.+.. +. ......++++||++|+||++++|.+|++||
T Consensus 80 ~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig 159 (215)
T 2wlg_A 80 LQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIP 159 (215)
T ss_dssp EEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEEC
T ss_pred EEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEEC
Confidence 667777777653321 22567889999999888887542 11 012234689999999999999999999999
Q ss_pred CCCEECcCCcc----CCCCccccCCCceeecc
Q 037878 1388 EEAEVAPLQKS----EGGKPILKSTNANYVQK 1415 (2280)
Q Consensus 1388 ~~a~ig~~s~v----~~~~~~~~g~p~~~~~~ 1415 (2280)
++|+||++|+| ++++.+.+|+||+....
T Consensus 160 ~~~vIgagsvV~~~vp~~~i~~aG~Pa~~i~~ 191 (215)
T 2wlg_A 160 NNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKE 191 (215)
T ss_dssp SSCEECTTCEECSCCCCCSCEEETTTTEEEEC
T ss_pred CCCEECCCCEEcCccCCCeEEEcccCCEEECC
Confidence 99999999998 66777733999997643
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=121.28 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.++||+|||||++||+||+.|+++|. +|+|+|+++.+||++
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~~~g~~~ 66 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHARAPGEKI 66 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCcee
Confidence 346799999999999999999999998 699999999997744
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-08 Score=112.32 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=77.7
Q ss_pred HcCCEECCCcEECcc---cc---------CCCCceEECCCCEeCCCCEEe----eccccC----------C---------
Q 037878 1315 MLGAKLGSSVLLDTV---DI---------TDPSLVLIGDGAVISEGALIQ----SHEVKN----------G--------- 1359 (2280)
Q Consensus 1315 ~lGa~Ig~~v~i~~~---~~---------~~~~~~~IG~~~~I~~~~~l~----~~~~~~----------~--------- 1359 (2280)
.-+++||++++|+.. .+ ...+.++||++|.|+++|.|. .|.+.+ +
T Consensus 27 ~~~i~IG~~~~I~~~~~~~i~~~~i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~ 106 (209)
T 1mr7_A 27 LENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLD 106 (209)
T ss_dssp STTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGG
T ss_pred CCCeEECCCcEEcCCCceEEeceEEeeccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccc
Confidence 357899999999652 11 123569999999999999883 333322 1
Q ss_pred -ceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1360 -VLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1360 -~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
....++++||++|+||++|+|.+|++||++++||++|+| ++++.+ .|+||+...
T Consensus 107 ~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~-~G~Pa~~i~ 165 (209)
T 1mr7_A 107 QLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLA-GGNPANEIK 165 (209)
T ss_dssp GSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-EETTEEEEE
T ss_pred cccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEE-EeeCCEEee
Confidence 124578999999999999999999999999999999998 677777 789998763
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-08 Score=117.99 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=73.1
Q ss_pred CEECCCcEECccccC--CCCceEECCCCEeCCCCEEeeccc--------cCCceeecCEEECCCcEECCCCEECCCCEEC
Q 037878 1318 AKLGSSVLLDTVDIT--DPSLVLIGDGAVISEGALIQSHEV--------KNGVLSFQPIKIARKVSVGPYAVIQKGSVIG 1387 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~~~--~~~~~~IG~~~~I~~~~~l~~~~~--------~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig 1387 (2280)
..||++|.|+..... +...++||++|.||++|.|.++.- .......++++||++|+||++|+|.+|++||
T Consensus 106 v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG 185 (252)
T 3jqy_B 106 VIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVG 185 (252)
T ss_dssp EEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEEC
T ss_pred EEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEEC
Confidence 356777777543221 122678888888888888865421 1123455789999999999999999999999
Q ss_pred CCCEECcCCcc----CCCCccccCCCceeecc
Q 037878 1388 EEAEVAPLQKS----EGGKPILKSTNANYVQK 1415 (2280)
Q Consensus 1388 ~~a~ig~~s~v----~~~~~~~~g~p~~~~~~ 1415 (2280)
+||+||++|+| ++++.+ .|+|++....
T Consensus 186 ~~~~IgagsvV~~~vp~~~~~-~G~Pa~~i~~ 216 (252)
T 3jqy_B 186 SGSVIGYGSIVTKDVPSMCAA-AGNPAKIIKR 216 (252)
T ss_dssp TTCEECTTCEECSCBCTTEEE-EETTEEEEEE
T ss_pred CCCEECCCCEECcccCCCCEE-EccCCEEEcc
Confidence 99999999999 677777 7899998744
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-08 Score=110.68 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=72.6
Q ss_pred CCEEC--CCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceee-------cCEEECCCcEECCCCEECCCCEEC
Q 037878 1317 GAKLG--SSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF-------QPIKIARKVSVGPYAVIQKGSVIG 1387 (2280)
Q Consensus 1317 Ga~Ig--~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~-------~~i~Ig~~~~iG~~~~i~pg~~ig 1387 (2280)
+++|| +++.|...... ...++||++|.|++++.+......++..++ +.++||++|+||++++|.+|++||
T Consensus 87 ~~~Ig~~~g~~I~~~~~I-~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig 165 (194)
T 3bfp_A 87 SAIVEENAGILIMPYVVI-NAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLA 165 (194)
T ss_dssp TCEECTTSCCEECTTCEE-CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CceeCCCCCcEEcCCCEE-CCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEEC
Confidence 57888 88888654332 245778888888888877654444444333 449999999999999999999999
Q ss_pred CCCEECcCCcc----CCCCccccCCCcee
Q 037878 1388 EEAEVAPLQKS----EGGKPILKSTNANY 1412 (2280)
Q Consensus 1388 ~~a~ig~~s~v----~~~~~~~~g~p~~~ 1412 (2280)
++++||++|+| ++++.+ .|+||+.
T Consensus 166 ~~~~Igagsvv~~~v~~~~~~-~G~Pa~~ 193 (194)
T 3bfp_A 166 DDSILGGGATLVKNQDEKGVF-VGVPAKR 193 (194)
T ss_dssp TTCEECTTCEECSCBCSCCEE-CCCCCCC
T ss_pred CCCEECCCCEEccccCCCCEE-EeeccEE
Confidence 99999999988 667777 7888863
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.62 E-value=4e-08 Score=119.23 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=49.6
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEec
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIG 1669 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G 1669 (2280)
++||++|.|+.++.|++.. .++ ..++++||++|+||.+++ +|++||+||+||++|+|+++ ++.... .|
T Consensus 265 vvIGdnv~Ig~ga~I~g~l-~g~--~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~d--v~i~~~-~G 332 (387)
T 2rij_A 265 AIVGEGSDVGGGASILGVL-SGT--SGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEG--TKFLLK-DA 332 (387)
T ss_dssp CEECTTCEECTTCEECCBC-SST--TCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTT--CEEEEC-CH
T ss_pred CEECCCCEECCCceEccee-cCC--CccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCC--ceeeec-CC
Confidence 4455556666666553211 111 125689999999999999 99999999999999999999 666554 55
|
| >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.2e-08 Score=92.72 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.+++++.+++++++++++++++|+++++|+ ++|.|||.+++++..+.+.||++++..++++.+|+++|++++.+.
T Consensus 3 ~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 78 (81)
T 3gzm_A 3 LKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKN 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHH
Confidence 567889999999999999988999999997 999999999999999999999999999999999999999999764
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-07 Score=117.50 Aligned_cols=41 Identities=29% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
++++||+|||||++|++||++|+++|+ +|+|+||++.+|+.
T Consensus 2 ~~~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~~~~~~~ 42 (369)
T 3dme_A 2 STDIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAAEGIGTG 42 (369)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSCS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCc
Confidence 456799999999999999999999999 69999999877753
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.3e-08 Score=113.08 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=62.9
Q ss_pred cCCEECCCcEECccccCCC---------------CceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEE
Q 037878 1316 LGAKLGSSVLLDTVDITDP---------------SLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVI 1380 (2280)
Q Consensus 1316 lGa~Ig~~v~i~~~~~~~~---------------~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i 1380 (2280)
.||+||+++.|.+..+... ..++||++|.|+++|.|.+..- + -..++++||++|+||++|+|
T Consensus 172 ~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~-~--~~~~~V~IGDnv~IGanAtI 248 (332)
T 3fsy_A 172 LGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLS-G--GGTHVISIGKRCLLGANSGL 248 (332)
T ss_dssp TTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC------CCBCEECTTCEECTTCEE
T ss_pred CCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCC-C--CCccceEECCCCEECCCCEE
Confidence 4677777777764221111 1278999999999998876421 1 23468999999999999999
Q ss_pred CCCCEECCCCEECcCCccCCCCcc
Q 037878 1381 QKGSVIGEEAEVAPLQKSEGGKPI 1404 (2280)
Q Consensus 1381 ~pg~~ig~~a~ig~~s~v~~~~~~ 1404 (2280)
|++||+||+||++|+|..++++
T Consensus 249 --gVtIGd~~iIGAGSVVtkdt~I 270 (332)
T 3fsy_A 249 --GISLGDDCVVEAGLYVTAGTRV 270 (332)
T ss_dssp --CSCBCSSCEECTTCEECTTCEE
T ss_pred --eeEECCCCEECCCCEECCCCEE
Confidence 9999999999999999777666
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.4e-08 Score=110.98 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
.+.++++|+++|+++|+++++.|+.+++||++|+|||.+++++..|++.+|++++..++|++||+++|++++.+..
T Consensus 128 ~~~i~~~l~~~~~~~l~~~~~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~l~~~~ 203 (212)
T 2l22_A 128 RESIQDYLKQSLGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRRV 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 4678899999999999998889999999999999999999999999999999999999999999999999997654
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=7.9e-08 Score=113.16 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=68.2
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceee---------------cCEEECCCcEECCCCEEC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF---------------QPIKIARKVSVGPYAVIQ 1381 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~---------------~~i~Ig~~~~iG~~~~i~ 1381 (2280)
+++||++|.|...... ...+.||++|.|+.++.|.++...+...++ ++++||++|+||++|+|.
T Consensus 103 ~v~Ig~~~~I~~~s~I-~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~ 181 (240)
T 3r8y_A 103 HVEIGDNAVIMMNATI-NIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVL 181 (240)
T ss_dssp SCEECTTCEECTTCEE-CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEEC
T ss_pred CcEECCCCEECCCCEE-CCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEEC
Confidence 3566666666432221 123556666666666655544444433333 358999999999999999
Q ss_pred CCCEECCCCEECcCCcc----CCCCccccCCCceeecc
Q 037878 1382 KGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQK 1415 (2280)
Q Consensus 1382 pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~~ 1415 (2280)
+|++||++|+|+++++| ++++.+ .|+||+....
T Consensus 182 ~~~~Ig~~~~I~~gsvV~~~vp~~~v~-~G~Pak~i~~ 218 (240)
T 3r8y_A 182 EGVTVGKGAVVAAGAVVTEDVPPYTVV-AGTPARVIKE 218 (240)
T ss_dssp TTCEECTTCEECTTCEECSCBCTTEEE-EETTEEEEEE
T ss_pred CCcEECCCCEECCCCEECCCcCCCcEE-EccCCEEEec
Confidence 99999999999999988 677777 8999997643
|
| >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=95.90 Aligned_cols=79 Identities=23% Similarity=0.401 Sum_probs=73.2
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhc
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMK 1156 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~ 1156 (2280)
..++++++++++|+++||++++.|+.+++|| ++|+|||.++++...|++.||+.++..++++++|+++|++++.+....
T Consensus 4 ~~~~i~~~l~~il~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~~ 83 (115)
T 1klp_A 4 TQEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEEE 83 (115)
T ss_dssp CHHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHHcc
Confidence 3577899999999999999988999999997 999999999999999999999999999999999999999999876543
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-08 Score=94.14 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
.++++++++++|+++++++++.|+.+++| +++|+|||.++++...++++||++++..++++.+|+++|++++.+
T Consensus 5 ~~~i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 79 (81)
T 1f80_D 5 SADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQN 79 (81)
T ss_dssp CCHHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHHHh
Confidence 46788999999999999998899999999 899999999999999999999999999999999999999998753
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-08 Score=113.63 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=51.7
Q ss_pred eEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCccCCCCccc
Q 037878 1337 VLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSEGGKPIL 1405 (2280)
Q Consensus 1337 ~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v~~~~~~~ 1405 (2280)
++||++|.|+++|.|.+.. ++ ...++|+||++|+||++|+| |++||+||+||++|+|..+++++
T Consensus 231 v~IGdnv~IgpGa~IgG~~-~~--~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I~ 294 (347)
T 3r5d_A 231 VFVGKGSDLGGGCSTMGTL-SG--GGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKVA 294 (347)
T ss_dssp CEECTTEEECTTCEECC---------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTCEEE
T ss_pred EEECCCCEECCCCEEcccc-CC--CCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEE
Confidence 6788888888888886542 11 23468999999999999999 99999999999999998888874
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-07 Score=109.12 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=27.5
Q ss_pred eCeEECCCcEEccCCeeCC-CcEeCCCcEEccCccccCCCccCCCcEEec
Q 037878 1621 GKVEVQDNSVIGSQSLVLP-NSVVSRDVILGALSVAPMHSVLQRGGIYIG 1669 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~~v~~-g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G 1669 (2280)
..+.||++|.||+++.+.+ .+.|+++++||.++.+...-.+..+....|
T Consensus 242 ~nv~Ig~nv~Ig~~~~ia~g~~~i~~~~vIGg~a~I~g~v~Ig~~~~I~~ 291 (334)
T 2pig_A 242 GNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISG 291 (334)
T ss_dssp SSEEECTTEEECTTCEEESSCEEEESSEEECTTCEEESSEEEESSEEECT
T ss_pred CCCEEcCCCEEeCCcEEcCCCeEECCeEEEcCCcEECcCcEECCCcEECC
Confidence 3455666666666555554 455666666666666665433444444433
|
| >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=91.26 Aligned_cols=75 Identities=17% Similarity=0.361 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.++++++++++++++++++++.|+.+++|| ++|.|||.++++...+++.||++++..++++.+|+++|++++.+.
T Consensus 5 ~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2qnw_A 5 DRPLLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKA 80 (82)
T ss_dssp SHHHHHHHHHHHHHHHCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHHHHHHh
Confidence 467889999999999999888999999995 999999999999999999999999999999999999999998763
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-08 Score=118.35 Aligned_cols=48 Identities=35% Similarity=0.495 Sum_probs=43.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEA 69 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~ 69 (2280)
+.||+|||||+|||+||+.|+++|+ +|+||||++++||++++.+.++.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~~~~GG~~~~~~~~~~ 49 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSRGSGGRMSSKRSDAG 49 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEEEETTE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcccccccCCc
Confidence 4799999999999999999999999 69999999999999998776543
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-07 Score=120.03 Aligned_cols=40 Identities=40% Similarity=0.618 Sum_probs=36.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+++||+|||||++||+||+.|+++|. +|+|+||++.+|++
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~-~V~llEk~~~~g~~ 64 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNKLGRK 64 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCC-CEEEEECCCCCCce
Confidence 34799999999999999999999998 69999999988864
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5e-07 Score=117.13 Aligned_cols=43 Identities=40% Similarity=0.600 Sum_probs=37.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
|+.++||+|||||++||+||++|+++|+++|+||||++..||.
T Consensus 3 ~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~ 45 (438)
T 3dje_A 3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAI 45 (438)
T ss_dssp CCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTT
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCC
Confidence 3456899999999999999999999998249999999988874
|
| >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-08 Score=96.98 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
++++.++++|+++|+++++.|+.+++| +++|+|||.++++...+++.||++++..++++++|+++|++++.+
T Consensus 4 ~i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 76 (79)
T 2l3v_A 4 DTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDK 76 (79)
T ss_dssp HHHHHHHHHHHHHTCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHH
Confidence 578899999999999988899999999 899999999999999999999999999999999999999999875
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=8.1e-08 Score=92.46 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhCCCCc-ccc--CCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1082 IVEFLKGLVSEQTGIPIT-KVS--ATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~~~~-~i~--~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
+++.++++|+++|+++.+ .++ .+++|+++|+|||.++++...++++||++++..++++++|+++|++++.+
T Consensus 5 ~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 78 (83)
T 1or5_A 5 TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNT 78 (83)
T ss_dssp CHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHHHH
Confidence 457899999999999876 788 89999999999999999999999999999999999999999999999864
|
| >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-07 Score=88.72 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
..++++++++++++++++++++.|+.+++| .++|.|||.++++...++++||++++..++++.+|+++|++++.+.
T Consensus 6 ~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 82 (84)
T 2kwl_A 6 DNDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82 (84)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHH
Confidence 457888999999999999988899999999 8999999999999999999999999999999999999999998764
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-07 Score=91.93 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhCCCCc----cccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhh
Q 037878 1083 VEFLKGLVSEQTGIPIT----KVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVM 1155 (2280)
Q Consensus 1083 e~~l~~iw~~vLg~~~~----~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~ 1155 (2280)
.+.++++|+++|+.+.. .|+.+++|+++|+|||.+++++.+|++.||++++..++++++|+++|++++.+...
T Consensus 6 ~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~ 82 (95)
T 1nq4_A 6 LSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLT 82 (95)
T ss_dssp HHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHHHHHHHHh
Confidence 45788999999998643 68999999999999999999999999999999999999999999999999987553
|
| >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=93.13 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
..+++++.|++++++++++++++|+.+++|+ +||.|||.++.+...|++.||++++..+++..+|+++|++++.+
T Consensus 19 t~~~i~~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~ 94 (97)
T 3ejb_A 19 HMSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYING 94 (97)
T ss_dssp CCCCHHHHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHH
Confidence 4567889999999999999999999999997 99999999999999999999999999999999999999999976
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-07 Score=114.80 Aligned_cols=43 Identities=33% Similarity=0.462 Sum_probs=38.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
||+++||+|||||++|++||+.|+++|. +|+|+||++.+|++.
T Consensus 1 MM~~~dViIIGgG~aGl~aA~~la~~G~-~V~vlEk~~~~g~~~ 43 (401)
T 2gqf_A 1 MSQYSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKKIGRKI 43 (401)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHH
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhCCC-CEEEEeCCCCCchhc
Confidence 3456899999999999999999999998 699999999987643
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-07 Score=120.68 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=49.7
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.|+. ++||++|.||++|.|.+..... ++.+||++|+||+++ ++||++++||++|
T Consensus 389 ~~Ig~~~~i~~---------~~Ig~~~~IG~~~~i~~~~~~~-----~~~~ig~~~~ig~~~-----v~Ig~~a~i~ags 449 (451)
T 1yp2_A 389 IGIGKNCHIKR---------AIIDKNARIGDNVKIINKDNVQ-----EAARETDGYFIKSGI-----VTVIKDALIPSGI 449 (451)
T ss_dssp SEECTTCEEES---------EEECTTCEECTTCEECCSSCCS-----CEEEGGGTEEEETTE-----EEECTTCEECTTC
T ss_pred EEECCCCEEec---------cEeCCCcEECCCCEEeCCcccc-----cCceeCCCEEEcCCE-----EEECCCcEECCCc
Confidence 57888888743 7899999999999986432221 223899999999888 8999999999999
Q ss_pred cc
Q 037878 1654 VA 1655 (2280)
Q Consensus 1654 ~v 1655 (2280)
+|
T Consensus 450 vv 451 (451)
T 1yp2_A 450 II 451 (451)
T ss_dssp BC
T ss_pred cC
Confidence 86
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-07 Score=116.24 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+++||+|||||++||+||++|+ +|+ +|+||||++++|+.
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~-~V~vlE~~~~~g~~ 46 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHG-RVVVLEREAQPGYH 46 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTS-CEEEECSSSSTTSS
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCC-CEEEEECCCCcccc
Confidence 3689999999999999999999 698 69999999888753
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=114.81 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=36.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
|+++||+|||||++||+||+.|+++|+ +|+||||++.+|.
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G~-~V~v~Er~~~~~~ 41 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSTTC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC
Confidence 446899999999999999999999999 6999999988765
|
| >1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-07 Score=90.24 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCCCCc----cccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1082 IVEFLKGLVSEQTGIPIT----KVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~~~~----~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
+++.++++++++++++.+ .|+++++|.++|.|||.++++...++++||++++..++++.+|+++|++++.+..
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 467899999999999876 6789999999999999999999999999999999999999999999999998654
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-07 Score=114.72 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=39.3
Q ss_pred HHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 195 LSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 195 la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
.+++.|++|+++++|++|+.+++++.+.+++.+|+..+++||.||.|
T Consensus 115 ~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A 161 (421)
T 3nix_A 115 EAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDA 161 (421)
T ss_dssp HHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEEC
T ss_pred HHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 33445899999999999999888777788888885457999999998
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-07 Score=114.60 Aligned_cols=39 Identities=33% Similarity=0.650 Sum_probs=36.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
++||+|||||++||+||+.|+++|+ +|+|+|+++.+||.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~gg~ 41 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGL-SYVILDAEASPGGA 41 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSC-CEEEECCSSSSSGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCc
Confidence 5799999999999999999999999 69999999999984
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-06 Score=117.27 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=35.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
..+||+|||||++||+||+.|+++|. +|+|+||++.+|+
T Consensus 271 ~~~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~~~~g~ 309 (676)
T 3ps9_A 271 SKREAAIIGGGIASALLSLALLRRGW-QVTLYCADEAPAL 309 (676)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCcccc
Confidence 34799999999999999999999998 6999999988875
|
| >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.7e-07 Score=90.68 Aligned_cols=78 Identities=8% Similarity=0.162 Sum_probs=67.6
Q ss_pred ChhHHHHHHHHHHHHHhCC--CCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCccccc--CcccHHHHHHHHHhh
Q 037878 1078 SNKDIVEFLKGLVSEQTGI--PITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIF--TATCIADLASFSENL 1153 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~--~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~--~~pti~~LA~~l~~~ 1153 (2280)
+.++++++|+++|+++++. +.++|+.+++|+++|.|||.+++|+..|.+.||++++..+++ ..+|++.|+++++..
T Consensus 19 ~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~~v~~~ 98 (105)
T 2jq4_A 19 FQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLI 98 (105)
T ss_dssp ----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHHHHHHH
Confidence 4567889999999999874 467899999999999999999999999999999999999998 789999999999875
Q ss_pred hh
Q 037878 1154 VM 1155 (2280)
Q Consensus 1154 ~~ 1155 (2280)
..
T Consensus 99 ~~ 100 (105)
T 2jq4_A 99 LD 100 (105)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=119.86 Aligned_cols=40 Identities=33% Similarity=0.266 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
.++||+|||||++|++||++|+++|. +|+||||++.+|+.
T Consensus 263 ~~~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~~~~g~g 302 (689)
T 3pvc_A 263 RCDDIAIIGGGIVSALTALALQRRGA-VVTLYCADAQPAQG 302 (689)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHTTTC-CEEEEESSSSTTCS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCC-cEEEEeCCCccccc
Confidence 35799999999999999999999998 69999999888753
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7e-07 Score=117.73 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=37.6
Q ss_pred CCCeEEEECccHHHHHHHHHHH-hCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALA-KLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La-~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||++||+||+.|+ +.|+ +|+|+|+++.+||.+
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~-~v~viE~~~~~GGtw 48 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELGL-TTVGFDKADGPGGTW 48 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSSSCTHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCC-CEEEEECCCCCCCcc
Confidence 3579999999999999999999 9998 699999999999954
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=109.01 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=34.0
Q ss_pred cCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 14 LHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 14 ~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.+++.++++||+|||||++||++|+.|+++|+ +|+||||++..+
T Consensus 16 ~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~~~~ 59 (407)
T 3rp8_A 16 ENLYFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVKEIK 59 (407)
T ss_dssp -------CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSCC-
T ss_pred CcccCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCC
Confidence 34445567899999999999999999999999 699999987653
|
| >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-06 Score=86.33 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhc
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMK 1156 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~ 1156 (2280)
..++.++++++.+++++++++.|.++.+|.+||.|||.++.++..|.+.||+.++..++...+|+++|++++.+....
T Consensus 15 ~~~i~~~l~~ila~~l~v~~~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~~I~~~~~~ 92 (100)
T 1vku_A 15 RKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKLEE 92 (100)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHhhh
Confidence 567889999999999999989999999999999999999999999999999999999999999999999999876543
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=115.48 Aligned_cols=41 Identities=34% Similarity=0.526 Sum_probs=37.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
..+.||+|||||++||+||+.|+++|. +|+||||.+.+||.
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~-~V~vlEk~~~~gg~ 159 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGGN 159 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSCTT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence 345799999999999999999999998 69999999999884
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=111.43 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=35.9
Q ss_pred CCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 15 ~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
+.++++++||+|||||++||++|+.|+++|+ +|+||||++..+
T Consensus 5 ~~~~~~~~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~~~~ 47 (500)
T 2qa1_A 5 HHHHRSDAAVIVVGAGPAGMMLAGELRLAGV-EVVVLERLVERT 47 (500)
T ss_dssp ---CCSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCCC-C
T ss_pred cCCccCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCC
Confidence 4455677899999999999999999999999 699999987764
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=114.17 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=37.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||++||+||+.|++.|+ +|+|+|+++.+||.+
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~v~iiE~~~~~GGtw 48 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGM-KVLGIEAGEDVGGTW 48 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcc
Confidence 45799999999999999999999999 699999999999953
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=109.93 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=34.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.+.||+|||||++||+||+.|+++|. +|+|+||++..+
T Consensus 3 ~~~DVvIIGaG~~Gl~~A~~La~~G~-~V~vlE~~~~~~ 40 (397)
T 2oln_A 3 ESYDVVVVGGGPVGLATAWQVAERGH-RVLVLERHTFFN 40 (397)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCCC
Confidence 35799999999999999999999998 699999987654
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.4e-06 Score=108.10 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~ 67 (2280)
.|++++||+|||+|+.|...|..|++.|. +|+++||+++.||.+.+..++
T Consensus 4 ~~~~~~D~~i~GtGl~~~~~a~~~~~~g~-~vl~id~~~~~gg~~~~~~l~ 53 (650)
T 1vg0_A 4 NLPSDFDVIVIGTGLPESIIAAACSRSGQ-RVLHVDSRSYYGGNWASFSFS 53 (650)
T ss_dssp CCCSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHH
T ss_pred cCCCcCCEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCcccCccccccHH
Confidence 45567999999999999999999999998 699999999999999998733
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-06 Score=114.29 Aligned_cols=42 Identities=31% Similarity=0.477 Sum_probs=38.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
..+.||+|||||++||+||+.|+++|. +|+|+||.+.+||..
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~-~V~vlEk~~~~gg~s 165 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIGGNA 165 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTG
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCch
Confidence 345799999999999999999999998 699999999998853
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=111.98 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=56.4
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCC-------CcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLP-------NSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~-------g~~ig~ 1645 (2280)
|+.||++|.|+..+.+.. +.||+++.|++.+.+ +.+.||++|.||+++++.. +++|||
T Consensus 352 ~~~i~~~v~IG~~v~ik~---s~Ig~gskI~~~~~i------------~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd 416 (501)
T 3st8_A 352 GTALGADGKLGAFVEVKN---STIGTGTKVPHLTYV------------GDADIGEYSNIGASSVFVNYDGTSKRRTTVGS 416 (501)
T ss_dssp TCEECTTCEEEETEEEES---CEECTTCEEEESCEE------------ESEEECSSCEECTTCEEECBCSSSBCCEEECT
T ss_pred CcEEccccccCCeEEEcc---ceecCCcEEecccee------------cCceEcCCCEECCCEEEEcccCCcccCCEECC
Confidence 467777777777644433 778888888777777 6678999999999887743 477888
Q ss_pred CcEEccCccccCCCccCCCcEE
Q 037878 1646 DVILGALSVAPMHSVLQRGGIY 1667 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~ 1667 (2280)
||.||.+|.+...-.|-+|+..
T Consensus 417 ~~~iG~~~~l~~~v~Ig~~~~i 438 (501)
T 3st8_A 417 HVRTGSDTMFVAPVTIGDGAYT 438 (501)
T ss_dssp TCEECTTCEEESSEEECTTCEE
T ss_pred CcEECCCCEEcCCcEECCCCEE
Confidence 8888888877644333444433
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=109.14 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=34.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||++|+++|++|+++|. +|+|+||++..+|
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~~~~ 39 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMPPHQ 39 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCC
Confidence 4699999999999999999999998 6999999887765
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=106.79 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=61.0
Q ss_pred cCCEECCCcEECcc-ccCCCCce---------EECCCCEeCCCCEEeeccccCCce---eecCEEECCCcEECCCCEECC
Q 037878 1316 LGAKLGSSVLLDTV-DITDPSLV---------LIGDGAVISEGALIQSHEVKNGVL---SFQPIKIARKVSVGPYAVIQK 1382 (2280)
Q Consensus 1316 lGa~Ig~~v~i~~~-~~~~~~~~---------~IG~~~~I~~~~~l~~~~~~~~~~---~~~~i~Ig~~~~iG~~~~i~p 1382 (2280)
.+++||+++.|... ....++-. +||++|.||++|.|+.+....+.+ ..++++||++|+||++|+ +
T Consensus 228 ~~a~IG~gv~Ig~g~a~Ig~nv~vIG~~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~ 305 (387)
T 2rij_A 228 MGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--T 305 (387)
T ss_dssp TTCBCCTTCEECSSSCEECTTCEESSCCEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--E
T ss_pred CCeEEcCCCEEeCCeeEECCCcEEECCEEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--C
Confidence 45777777777542 21122222 556666666666666554322211 234699999999999999 9
Q ss_pred CCEECCCCEECcCCccCCCCcccc
Q 037878 1383 GSVIGEEAEVAPLQKSEGGKPILK 1406 (2280)
Q Consensus 1383 g~~ig~~a~ig~~s~v~~~~~~~~ 1406 (2280)
|++||+||+||++|+|..+..++.
T Consensus 306 GV~IGdgavIGAGsVVt~dv~i~~ 329 (387)
T 2rij_A 306 GIPLGDNCIVDAGIAVLEGTKFLL 329 (387)
T ss_dssp CSCBCTTCEECTTCEECTTCEEEE
T ss_pred CcEECCCCEECCCCEECCCceeee
Confidence 999999999999999988877754
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.1e-07 Score=113.54 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 189 TSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 189 ~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
..|.+.|.+.++.+|+++++|++++..+++. ++++..+| ++++||.||-|
T Consensus 112 ~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~-v~v~~~dG--~~~~adlvVgA 161 (412)
T 4hb9_A 112 TELKEILNKGLANTIQWNKTFVRYEHIENGG-IKIFFADG--SHENVDVLVGA 161 (412)
T ss_dssp HHHHHHHHTTCTTTEECSCCEEEEEECTTSC-EEEEETTS--CEEEESEEEEC
T ss_pred HHHHHHHHhhccceEEEEEEEEeeeEcCCCe-EEEEECCC--CEEEeeEEEEC
Confidence 3456667777888899999999998865542 57788899 57899999998
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.6e-06 Score=112.61 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++|++||+.|++.|+ +|+|+|+++.+||.+
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~~GGtw 60 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGL-TVRAFEAASGVGGVW 60 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHH
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcc
Confidence 35699999999999999999999999 699999999999954
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-06 Score=105.32 Aligned_cols=38 Identities=39% Similarity=0.624 Sum_probs=34.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
.++||+|||||++|+++|++|+++|+ +|+|+||++ +|+
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G~-~V~lle~~~-~~~ 41 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRGE-EVTVIEKRF-IGS 41 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS-TTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC-CCC
Confidence 46799999999999999999999998 699999984 554
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-06 Score=106.64 Aligned_cols=38 Identities=53% Similarity=0.637 Sum_probs=33.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-CC-CCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK-LG-YRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~-~G-~~~VtVlEk~~riG 58 (2280)
.++||+|||||++|+++|++|++ +| . +|+|+||++..+
T Consensus 20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~-~V~vlE~~~~~~ 59 (405)
T 2gag_B 20 KSYDAIIVGGGGHGLATAYFLAKNHGIT-NVAVLEKGWLAG 59 (405)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHCCC-CEEEECSSSTTC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHhcCCC-cEEEEeCCCCCC
Confidence 35799999999999999999999 99 8 699999988433
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=108.94 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=35.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.++||+|||||++|+++|++|+++|. +|+|+|+++..+|
T Consensus 15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~~g 54 (382)
T 1ryi_A 15 KRHYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMGGR 54 (382)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTTTT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCCcc
Confidence 345799999999999999999999998 6999999876555
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-06 Score=112.70 Aligned_cols=38 Identities=34% Similarity=0.477 Sum_probs=34.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.+.||+|||||++||++|+.|+++|+ +|+||||++..+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~-~v~viEr~~~~~ 41 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGV-RVLVVERRPGLS 41 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSSSCC
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCC
Confidence 35799999999999999999999999 699999987654
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.4e-06 Score=111.04 Aligned_cols=43 Identities=30% Similarity=0.528 Sum_probs=35.7
Q ss_pred CCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 15 ~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
+..||+++||+|||||++|++||+.|+++|+ +|+|+|+.+..+
T Consensus 17 ~~~~M~~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~~~~ 59 (591)
T 3i3l_A 17 RGSHMTRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAFPR 59 (591)
T ss_dssp ---CCCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCSSC
T ss_pred CcCcCCCCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCCCCC
Confidence 3445567899999999999999999999999 699999986544
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=110.69 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=34.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
++||+|||||++|+++|++|+++|+ +|+|+|+++..+
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCC
Confidence 5799999999999999999999998 699999987665
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.8e-06 Score=107.58 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 187 GYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 187 G~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
-+..+....+++.|.+|+++++|++++.+++++.+.+.+.+| .++++||.||.|
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g-~~~~~a~~vVgA 161 (499)
T 2qa2_A 108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDG-PRSLTTRYVVGC 161 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSC-EEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCC-cEEEEeCEEEEc
Confidence 344445454556789999999999999988887666665555 357999999998
|
| >4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-06 Score=85.32 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHhCCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHh
Q 037878 1080 KDIVEFLKGLVSEQTGIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSEN 1152 (2280)
Q Consensus 1080 ~~~e~~l~~iw~~vLg~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~ 1152 (2280)
.++.+.|++++++++++++++|.++.+| .+||.|||.++.++..|++.||++++..++...+|+++|++++.+
T Consensus 25 mei~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~I~~ 98 (101)
T 4dxe_H 25 MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINS 98 (101)
T ss_dssp TTHHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHH
Confidence 4678899999999999999999999999 799999999999999999999999999999999999999999864
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=106.33 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=37.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+.||+|||||++||+||+.|+++|. +|+|+||.+..||.+
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~-~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGA-DVLVLERTSGWGGAT 80 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTG
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCcc
Confidence 45799999999999999999999998 699999999999854
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=81.95 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCCC-CccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1084 EFLKGLVSEQTGIP-ITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1084 ~~l~~iw~~vLg~~-~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
+.+++..+++||++ ++.|.++.+|.+||.|||.++.+.++|++.||+.++..+++. +|+.+|++.+...
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~-~Ti~~La~~v~~~ 78 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQELSSKA 78 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHHHHh-CCHHHHHHHHhcc
Confidence 36788899999996 478999999999999999999999999999999999999988 6999999998753
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-06 Score=108.87 Aligned_cols=43 Identities=44% Similarity=0.617 Sum_probs=38.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~riGG~~ 61 (2280)
++.+||+|||||++||+||..|++.|.. +|+|||+++.+||.+
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~ 47 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW 47 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCee
Confidence 4468999999999999999999999971 499999999999854
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.7e-06 Score=103.63 Aligned_cols=40 Identities=35% Similarity=0.529 Sum_probs=35.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
|+++||+|||||++||++|+.|+++|+ +|+|+|+++..++
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~~ 48 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSELRA 48 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSCCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCC
Confidence 446899999999999999999999998 6999999887764
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=103.04 Aligned_cols=37 Identities=35% Similarity=0.549 Sum_probs=33.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+++||+|||||++||++|+.|+++|+ +|+|+||++..
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 40 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQP 40 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCC
Confidence 45799999999999999999999999 69999998764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-05 Score=103.58 Aligned_cols=41 Identities=39% Similarity=0.468 Sum_probs=35.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCc-eEEEecCCCCCc
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRN-VTLLEKYHTVGG 59 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~-VtVlEk~~riGG 59 (2280)
|++++||+|||||++||++|+.|+++|+ + |+|+||++.++.
T Consensus 1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~-~~v~v~E~~~~~~~ 42 (410)
T 3c96_A 1 MSEPIDILIAGAGIGGLSCALALHQAGI-GKVTLLESSSEIRP 42 (410)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSSSCCC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCCccc
Confidence 4556899999999999999999999998 8 999999887653
|
| >2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.41 E-value=3.4e-07 Score=91.25 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1082 IVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
+++.|+++++++|++++++|+++++|.+||.|||.+++++..|++.||++++..++++.+|+++|++++.+.
T Consensus 27 i~~~l~~ila~~l~i~~~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I~~~ 98 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKH 98 (103)
Confidence 788999999999999888999999999999999999999999999999999999999999999999998764
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.12 E-value=4e-06 Score=105.49 Aligned_cols=43 Identities=23% Similarity=0.459 Sum_probs=37.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
|++++||+|||||++||+||++|+++|+ +|+|+|+++.+||.+
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~ 53 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNI-SCRIIESMPQLGGQL 53 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCCCcc
Confidence 4556899999999999999999999999 699999999999844
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-06 Score=105.24 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=34.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
++||+|||||++||+||+.|+++|+ +|+|+|++ +||.
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~--~gg~ 51 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYML-KTLVIGET--PGGQ 51 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS--TTGG
T ss_pred ccCEEEECccHHHHHHHHHHHHCCC-cEEEEecc--CCCe
Confidence 5799999999999999999999998 69999998 8884
|
| >2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-06 Score=85.97 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCccc------c-----cCcccHHHHHH
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVD------I-----FTATCIADLAS 1148 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~d------i-----~~~pti~~LA~ 1148 (2280)
++.+++++++++++++++++|..+++|+ +||.|||.++.++..|.+.||+.++..+ + |++||+++|++
T Consensus 3 ~i~~~v~~ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~ 82 (101)
T 2kw2_A 3 STFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAA 82 (101)
T ss_dssp CHHHHHHHHHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHH
Confidence 4567899999999999988999999995 9999999999999999999999998876 4 66666999999
Q ss_pred HHHhhhh
Q 037878 1149 FSENLVM 1155 (2280)
Q Consensus 1149 ~l~~~~~ 1155 (2280)
++.+...
T Consensus 83 ~i~~~~~ 89 (101)
T 2kw2_A 83 RIDELVA 89 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9987553
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.1e-06 Score=110.42 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=39.1
Q ss_pred HHHHHHhHCCCceEeCcceEEEEEcCCccE-EEEEeCCCceEEEEeCEEEEc
Q 037878 191 LWQKLSKYLPTEVHCNSEVLAIRRDSTTVG-VDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 191 l~~~la~~lg~~I~l~t~V~~I~~~~~~v~-V~v~t~~G~~~~i~aD~VI~A 241 (2280)
.+...+++.|++|+++++|++|..+++++. +.+.+.+|+.++++||.||.|
T Consensus 116 ~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~A 167 (512)
T 3e1t_A 116 MLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDA 167 (512)
T ss_dssp HHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEEC
Confidence 333334456899999999999999877653 566677785558999999998
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=9.3e-06 Score=107.70 Aligned_cols=42 Identities=38% Similarity=0.621 Sum_probs=38.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.+.||+|||||++||+||+.|+++|+ +|+|+|+++.+||.+
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~~GG~w 55 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGGVW 55 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHH
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcc
Confidence 345799999999999999999999999 699999999999954
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-05 Score=106.38 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=37.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++||+||+.|+++|+ +|+|+||++.+||..
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~-~v~~~e~~~~~~~~~ 165 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNT 165 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSC-CEEEECSSSSSCTTG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCcch
Confidence 35699999999999999999999998 699999999999853
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.2e-06 Score=101.00 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=37.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+++||+|||||++||+||+.|+++|+ +|+|+|+++.+||.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~ 44 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGL-SFRFVDPLPEPGGQL 44 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSCHHH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCCCee
Confidence 45799999999999999999999998 699999999999844
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-06 Score=109.80 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 194 KLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 194 ~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
..+++.|++|+++++|++|+.+++++.+.+++.+|+ ++++||.||.|
T Consensus 156 ~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~-~~~~a~~vV~A 202 (570)
T 3fmw_A 156 EHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGP-YPVRARYGVGC 202 (570)
T ss_dssp HHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEE-EEEEESEEEEC
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCc-EEEEeCEEEEc
Confidence 333445889999999999999888887666657773 57999999998
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.9e-06 Score=105.88 Aligned_cols=40 Identities=30% Similarity=0.497 Sum_probs=36.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++||+||+.|+++|+ +|+|+|+.+.++++.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~-kV~VlEr~~~~~~R~ 146 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERT 146 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTC-CCEEECSSCCHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-eEEEEEccCcccccc
Confidence 4799999999999999999999999 699999999887744
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.04 E-value=8.1e-06 Score=103.01 Aligned_cols=40 Identities=33% Similarity=0.606 Sum_probs=35.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+++||+|||||++||+||+.|++.|+++|+|+|+++ +||.
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~ 42 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHS 42 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHH
T ss_pred ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCc
Confidence 357999999999999999999999972399999998 9983
|
| >2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.7e-06 Score=81.74 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHh---CCCCccccCCCCh-hhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSEQT---GIPITKVSATDSL-VSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vL---g~~~~~i~~~~~F-f~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
..++.+++++++++++ ++++++|+.+++| -++|.|||.++.++..+.++||++++..++.+.+|+++|++++.+..
T Consensus 6 ~~~i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 85 (88)
T 2l4b_A 6 SEEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYIASKS 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHhh
Confidence 4678899999999999 7777789999999 59999999999999999999999999999999999999999997643
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-06 Score=105.09 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=35.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC----CCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY----HTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~----~riGG~ 60 (2280)
.+++||+|||||++||+||+.|+++|+ +|+|+|++ .++||.
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~~~~~~~~gg~ 64 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAEI-KPILYEGMMANGIAAGGQ 64 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSBTTBCTTCG
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCCCCCCcCcc
Confidence 346799999999999999999999999 69999994 477773
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.4e-06 Score=108.20 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=36.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
.+.||+|||||++|+++|+.|+++|+ +|+|+||++..||.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~-~V~LlEk~d~~~Gt 56 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGI-QTGLVEMNDFASGT 56 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSSTTCSG
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCCCCCc
Confidence 45899999999999999999999999 69999999877764
|
| >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A | Back alignment and structure |
|---|
Probab=98.02 E-value=8.6e-06 Score=77.38 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHhCCCCccccCCCChhhcc-cchHHHHHHHHHHHHHhCCccCccccc--CcccHHHHHHHHHh
Q 037878 1080 KDIVEFLKGLVSEQTGIPITKVSATDSLVSYG-IDSIGVVRAAQKLSDFLGVPVGAVDIF--TATCIADLASFSEN 1152 (2280)
Q Consensus 1080 ~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lG-GdSL~a~~l~~~l~~~~g~~l~~~di~--~~pti~~LA~~l~~ 1152 (2280)
+++.+++++++++.++.++..+..+++|+++| .|||.+++++..|.++||++++..++. ..+|++++++++.+
T Consensus 3 ~~i~~~i~~il~~~~~~~~~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~ 78 (80)
T 1dv5_A 3 EAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQ 78 (80)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHH
Confidence 56788999999999998877889999999999 999999999999999999999999988 89999999999875
|
| >2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=77.00 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcc-cccCcccHHHHHHHHHhhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAV-DIFTATCIADLASFSENLVM 1155 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~-di~~~pti~~LA~~l~~~~~ 1155 (2280)
.+++++.++++.++.|+++++.|.++.+|+ +||.|||.++.|+..+.+.||++++.. .-|...|+++++.++++...
T Consensus 12 ~~~I~~~V~~ilaE~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~~e~~~~~TV~d~vdyI~~~~~ 90 (102)
T 2l9f_A 12 ATGALELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAMPTNFATATVREMAEALEARER 90 (102)
T ss_dssp SCCHHHHHHHHHHHHTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSSCSCCTTCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCccHHHHHHccHHHHHHHHHHhhc
Confidence 367889999999999999999999999998 999999999999999999999997643 33566999999999998664
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=110.65 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=33.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+++.||+|||||++|+++|++|+++|..+|+|+||++..
T Consensus 2 ~~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~ 40 (830)
T 1pj5_A 2 ASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN 40 (830)
T ss_dssp --CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence 456899999999999999999999997249999998763
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.7e-05 Score=99.72 Aligned_cols=62 Identities=27% Similarity=0.427 Sum_probs=53.0
Q ss_pred CCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE---C--CeEEEEecCCCeEEECCeeec
Q 037878 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII---D--GKFFITGRIKDLIIVAGRNVY 924 (2280)
Q Consensus 850 ~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~---d--G~l~~~GR~dd~IKi~G~rI~ 924 (2280)
++.|+.+||+|... .|+|. ||+||++++. + ..+.|+||.|++++++|++|.
T Consensus 393 Ve~G~~YelViTt~---~GL~R---------------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~ 448 (609)
T 4b2g_A 393 VEVGKEYELVITTY---AGLYR---------------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTD 448 (609)
T ss_dssp CCTTCEEEEEEECT---TSCCS---------------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred cCCCCeEEEehhhh---hhhhh---------------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCC
Confidence 36899999999754 35552 8999999995 3 579999999999999999999
Q ss_pred hHHHHHHHHhc
Q 037878 925 SADVEKTVESS 935 (2280)
Q Consensus 925 ~~EIE~~L~~~ 935 (2280)
..|||++|.+.
T Consensus 449 ~~~v~~av~~a 459 (609)
T 4b2g_A 449 EAELQKAVDNA 459 (609)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999854
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=104.09 Aligned_cols=37 Identities=30% Similarity=0.497 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+++||+|||||++||+||+.|+++|+ +|+|+||++..
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~-~V~vlE~~~~~ 41 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGL-KILLVDSKPWN 41 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSC-CEEEECSSCGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCC
Confidence 35799999999999999999999999 69999998764
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=104.72 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=36.8
Q ss_pred CeEEEECccHHHHHHHHHHHh---CCCCc---eEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAK---LGYRN---VTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~---~G~~~---VtVlEk~~riGG~~ 61 (2280)
+||+|||||++||+||..|++ .|. + |+|||+++.+||.+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~-~~~~V~v~E~~~~~GG~w 47 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGA-EIPELVCFEKQADWGGQW 47 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTC-CCCEEEEECSSSSSCGGG
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCC-CCCcEEEEEcCCCCCCEe
Confidence 699999999999999999999 998 7 99999999999954
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=7.6e-06 Score=101.51 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=37.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++||+||+.|+++|+ +|+|+|+++.+||..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gG~~ 46 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQA-SVKIIESLPQLGGQL 46 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCCCcee
Confidence 4699999999999999999999998 699999999999844
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=6.9e-06 Score=109.08 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=34.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||++||++|+.|+++|+ +|+|+||++..+.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~~~~~ 63 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQV-GHLVVEQTDGTIT 63 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSCCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCC
Confidence 4699999999999999999999999 6999999887654
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=5.3e-06 Score=108.23 Aligned_cols=38 Identities=29% Similarity=0.250 Sum_probs=35.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC-----CCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLG-----YRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G-----~~~VtVlEk~~riGG 59 (2280)
.+||+|||||++||+||..|++.| . +|+|||+++.+|.
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~-~v~liE~~~~~g~ 72 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGAL-EVLFLDKQGDYRW 72 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCC-CEEEEESCSSCCS
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcc-cEEEEecCCCCCC
Confidence 359999999999999999999999 8 6999999998874
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.9e-06 Score=106.31 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++||+|||||++||++|+.|+++|+ +|+|+||++..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~-~V~viE~~~~~ 41 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGH-RVVVVEQARRE 41 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence 4699999999999999999999999 69999998665
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=103.44 Aligned_cols=40 Identities=43% Similarity=0.544 Sum_probs=36.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
...+||+|||||++||++|..|++.|+ +|+|+|+++.+|+
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~~~g~ 129 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRIKFSR 129 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCSSCCC
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEeccccCC
Confidence 456899999999999999999999998 6999999998875
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=9.8e-05 Score=95.75 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=52.1
Q ss_pred CCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-----CCeEEEEecCCCeEEECCeeech
Q 037878 851 EPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-----DGKFFITGRIKDLIIVAGRNVYS 925 (2280)
Q Consensus 851 p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-----dG~l~~~GR~dd~IKi~G~rI~~ 925 (2280)
..|+.+||+|...+ |.|. ||+||++++. ...+.|+||.|+++++.|+++..
T Consensus 382 e~G~~YelViTt~~---GL~R---------------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~ 437 (581)
T 4eql_A 382 KLGCTYEPVVTNFA---GLYR---------------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNE 437 (581)
T ss_dssp CTTCEEEEEEECSS---SCCS---------------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEH
T ss_pred CCCceEEEEEeecc---ceee---------------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCH
Confidence 58999999998652 3331 7999999994 35799999999999999999999
Q ss_pred HHHHHHHHhcc
Q 037878 926 ADVEKTVESST 936 (2280)
Q Consensus 926 ~EIE~~L~~~p 936 (2280)
.|||++|.+..
T Consensus 438 ~~v~~al~~a~ 448 (581)
T 4eql_A 438 EDLFKAVSQAK 448 (581)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999998653
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00047 Score=89.13 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=52.3
Q ss_pred CCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEEC-----CeEEEEecCCCeEEECCeeec
Q 037878 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID-----GKFFITGRIKDLIIVAGRNVY 924 (2280)
Q Consensus 850 ~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~d-----G~l~~~GR~dd~IKi~G~rI~ 924 (2280)
++.|+.+||+|...+ |.| =||+||++++.+ ..+.|+||.|+++++.|+++.
T Consensus 388 ve~G~~YelviTt~~---GL~---------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~ 443 (581)
T 4epl_A 388 VKIGEEYEVVITNYA---GLY---------------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNT 443 (581)
T ss_dssp CCTTCEEEEEEESTT---SCS---------------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred cCCCCeEEEEEeecc---cee---------------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECC
Confidence 368999999998642 333 179999999952 479999999999999999999
Q ss_pred hHHHHHHHHhc
Q 037878 925 SADVEKTVESS 935 (2280)
Q Consensus 925 ~~EIE~~L~~~ 935 (2280)
..+||++|.+.
T Consensus 444 ~~~v~~al~~a 454 (581)
T 4epl_A 444 ERDLQLSVESA 454 (581)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999863
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.5e-05 Score=98.05 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=34.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
++.||+|||||++|+++|+.|+++|. +|+|+||++..+|
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G~-~V~llE~~~~~~g 40 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRGL-SVLMLEAQDLACA 40 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTTCS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-CEEEEECCCCCCC
Confidence 45799999999999999999999999 6999999875444
|
| >2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.8e-06 Score=98.51 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHH
Q 037878 1083 VEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSE 1151 (2280)
Q Consensus 1083 e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~ 1151 (2280)
.+|+++.|+++| .+++.|+.+++|+++|+||+.+|+|+.++++. |+++++.++|++||++++++++.
T Consensus 217 ~dwlr~~va~~L-~~~~~i~~~~nL~~lGlDSi~~m~l~~~~~~~-g~~~~~~~l~~~ptl~~~~~~l~ 283 (287)
T 2fq1_A 217 KAALREVILPLL-DESDEPFDDDNLIDYGLDSVRMMALAARWRKV-HGDIDFVMLAKNPTIDAWWKLLS 283 (287)
T ss_dssp HHHHHHHHGGGC-CCSSCCCTTSCSGGGTCCTTHHHHHHHHHTTT-CTTCCHHHHHTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHhhcCCCCCHHHhCccHHHHHHHHHHHHHc-CCCCCHHHHHhCccHHHHHHHHH
Confidence 468999999999 88888999999999999999999999999998 99999999999999999999986
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=103.94 Aligned_cols=40 Identities=33% Similarity=0.569 Sum_probs=35.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+++||+|||||++||+||++|+++|+ +|+|+||++..||+
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~~gG~ 41 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYKGKEGK 41 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCBCTTSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-EEEEEeCCCccCCC
Confidence 46899999999999999999999998 69999999754443
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=99.48 Aligned_cols=35 Identities=37% Similarity=0.630 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
++||+|||||++||++|+.|+++|+ +|+|+||++.
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 36 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP 36 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred CccEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 4699999999999999999999999 6999999764
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.1e-05 Score=100.44 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCC-CCceEEEecCCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLG-YRNVTLLEKYHTVG 58 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G-~~~VtVlEk~~riG 58 (2280)
|+++||+|||||++|+++|++|+++| . +|+|+||++.+|
T Consensus 21 m~~~dVvIIGgGiaGls~A~~La~~G~~-~V~vlE~~~~~~ 60 (448)
T 3axb_A 21 MPRFDYVVVGAGVVGLAAAYYLKVWSGG-SVLVVDAGHAPG 60 (448)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHCS-CEEEEESSSSTT
T ss_pred CCcCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEccCCCCC
Confidence 35679999999999999999999999 8 699999955554
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.8e-06 Score=101.69 Aligned_cols=41 Identities=39% Similarity=0.526 Sum_probs=36.7
Q ss_pred CCeEEEECccHHHHHHHHHHHh--CCCCceEEEecCCCCCceEE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAK--LGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~--~G~~~VtVlEk~~riGG~~~ 62 (2280)
.+||+|||||++||+||++|++ +|+ +|+||||++++||.+.
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~-~V~viEk~~~~GG~~~ 107 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGGGSW 107 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEECCCCCCceEE
Confidence 4799999999999999999975 598 6999999999999653
|
| >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.3e-05 Score=75.95 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChh------hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHH
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLV------SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSE 1151 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff------~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~ 1151 (2280)
...++.++|+++.++.++ +.+.|..+++|+ +||.|||.++.++..|.++||+.++..++....|+++|++++.
T Consensus 16 ~~~~i~~~i~~il~e~l~-~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~ 94 (107)
T 3ce7_A 16 DINAVTNYIVGMCQKFLQ-KGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVV 94 (107)
T ss_dssp CHHHHHHHHHHHHHTTBC-TTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC-CccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHHHHH
Confidence 467889999999999999 888999999996 8899999999999999999999999999999999999999998
Q ss_pred hhhh
Q 037878 1152 NLVM 1155 (2280)
Q Consensus 1152 ~~~~ 1155 (2280)
+...
T Consensus 95 ~~~~ 98 (107)
T 3ce7_A 95 SERA 98 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6e-05 Score=100.48 Aligned_cols=39 Identities=41% Similarity=0.639 Sum_probs=36.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhC------CCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL------GYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~------G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||++||+||+.|+++ |+ +|+|+||.+.+|++
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~-~V~vlEk~~~~g~~ 79 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAHIGAH 79 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSSTTTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCC-cEEEEeCCCCCCCc
Confidence 47999999999999999999999 98 69999999998875
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=2.6e-05 Score=95.71 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=33.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCC-CceEEEecCCCCCce
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKYHTVGGM 60 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~-~~VtVlEk~~riGG~ 60 (2280)
+||+|||||++||+||+.|+++|+ + |+|+|+ +.+||.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~-v~lie~-~~~gg~ 39 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKN-AVLFEK-GMPGGQ 39 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSS-EEEECS-SSTTCG
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCc-EEEEcC-CCCCcc
Confidence 589999999999999999999997 6 999999 467773
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.3e-05 Score=98.97 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=40.0
Q ss_pred HHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcC
Q 037878 189 TSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISG 242 (2280)
Q Consensus 189 ~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~ 242 (2280)
...+.+..++.|++++++++|++|+.+++++ ..+++.+| +++.||.||+|+
T Consensus 197 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v-~~v~l~dG--~~i~aD~Vv~a~ 247 (415)
T 3lxd_A 197 SEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV-TGVRMQDG--SVIPADIVIVGI 247 (415)
T ss_dssp HHHHHHHHHHTTCEEEETCCEEEEEESSSBE-EEEEESSS--CEEECSEEEECS
T ss_pred HHHHHHHHHhCCCEEEECCEEEEEEecCCcE-EEEEeCCC--CEEEcCEEEECC
Confidence 4445555567799999999999999876654 36777788 578999999984
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.4e-05 Score=103.15 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=34.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-CCCCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlEk~~riG 58 (2280)
.+.||+|||||++||++|+.|++ .|+ +|+|+||++..+
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~-~V~viEr~~~~~ 69 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDI-RTCIVEQKEGPM 69 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTS-CEEEECSSSSCC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCC-CEEEEeCCCCCC
Confidence 35699999999999999999999 999 699999987653
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=97.69 E-value=3.2e-05 Score=94.93 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=32.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+||+|||||++||+||+.|+++|+ +|+|+|+ ++||.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~li~~--~~gG~ 37 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGI-RTGLMGE--RFGGQ 37 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTC-CEEEECS--STTGG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeC--CCCce
Confidence 699999999999999999999998 6999985 57774
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=88.04 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=32.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
++||+|||||++||+||+.|+++|+ +|+|+|+++.
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~ 36 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARK-NILLVDAGER 36 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCc
Confidence 3799999999999999999999998 6999999763
|
| >2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.67 E-value=7.4e-05 Score=74.51 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCC--CccccCCCChh-hccc-chHHHHHHHHHHHHHhCCccCccccc--CcccHHHHHHHHHhh
Q 037878 1081 DIVEFLKGLVSEQTGIP--ITKVSATDSLV-SYGI-DSIGVVRAAQKLSDFLGVPVGAVDIF--TATCIADLASFSENL 1153 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~--~~~i~~~~~Ff-~lGG-dSL~a~~l~~~l~~~~g~~l~~~di~--~~pti~~LA~~l~~~ 1153 (2280)
++.+.++++.++.++++ ++.|.++++|+ ++|. |||.+++++..|.+.||+.++..++. ...|+++|++++.+.
T Consensus 24 ~i~~~i~~il~e~l~~~~~~~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~~I~~~ 102 (105)
T 2lki_A 24 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHK 102 (105)
T ss_dssp CTHHHHHHHHHHHTTCTTGGGTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHHHHHHH
Confidence 45678999999999998 67899999999 5999 99999999999999999999999964 689999999999864
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.66 E-value=6.4e-05 Score=98.06 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=30.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
++||+|||||++||+||+.|+++ |+ +|+|+|+++.++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~-~Vtvie~~~~~~ 41 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEA-HVTMIDQASRIS 41 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTS-EEEEECCC----
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCccc
Confidence 57999999999999999999998 87 799999988764
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.4e-05 Score=97.55 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=33.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.||+|||||++||+||+.|++ |. +|+|+||.+..||..
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~-~V~vlEk~~~~~g~s 46 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QH-QVIVLSKGPVTEGST 46 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TS-CEEEECSSCTTC---
T ss_pred CCCEEEECccHHHHHHHHHHhc-CC-cEEEEECCCCCCCCh
Confidence 5799999999999999999999 98 699999999887643
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.65 E-value=9.9e-05 Score=98.33 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=35.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
.+.||+|||||++||+||+.|+++|. +|+|+||....||+
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~-~V~vlEK~~~~~g~ 56 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGF-NTACVTKLFPTRSH 56 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCGGGSG
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCCC
Confidence 35799999999999999999999998 69999998876663
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.4e-05 Score=96.11 Aligned_cols=39 Identities=26% Similarity=0.567 Sum_probs=35.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++||+||++|+++|+ +|+|+|| +.+||.|
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~g~-~V~liE~-~~~gG~~ 44 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRANL-KTVMIER-GIPGGQM 44 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SCTTGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEec-CCCCCee
Confidence 6899999999999999999999998 6999998 5788854
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=9.9e-05 Score=82.49 Aligned_cols=33 Identities=45% Similarity=0.665 Sum_probs=31.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
+||+|||||++|+.+|..|++.|. +|+|+|+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 589999999999999999999998 699999976
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=92.90 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcC
Q 037878 189 TSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISG 242 (2280)
Q Consensus 189 ~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~ 242 (2280)
...+.+..++.|++++++++|++|+.+++++ ..+++.+| +++.||.||+|+
T Consensus 187 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v-~~V~~~dG--~~i~aD~Vv~a~ 237 (404)
T 3fg2_P 187 SSYFHDRHSGAGIRMHYGVRATEIAAEGDRV-TGVVLSDG--NTLPCDLVVVGV 237 (404)
T ss_dssp HHHHHHHHHHTTCEEECSCCEEEEEEETTEE-EEEEETTS--CEEECSEEEECC
T ss_pred HHHHHHHHHhCCcEEEECCEEEEEEecCCcE-EEEEeCCC--CEEEcCEEEECc
Confidence 3344455566799999999999999876654 45777888 578999999984
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.60 E-value=3e-05 Score=94.86 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=33.8
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.|+++||+|||||++||+||++|+++|+ +|+|+|++ ..||
T Consensus 2 n~M~~yDVvIIGaGpAGlsAA~~lar~g~-~v~lie~~-~~gg 42 (304)
T 4fk1_A 2 NAMKYIDCAVIGAGPAGLNASLVLGRARK-QIALFDNN-TNRN 42 (304)
T ss_dssp ----CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECS-CCGG
T ss_pred CCCCCcCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC-CCCC
Confidence 35678999999999999999999999998 69999996 4555
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.59 E-value=2.7e-05 Score=102.14 Aligned_cols=45 Identities=33% Similarity=0.539 Sum_probs=37.0
Q ss_pred CCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 16 ~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++|+++||+|||||++||+||++|+++|+ +|+|+||++.+||.|
T Consensus 20 ~~~m~~~dVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~~GG~~ 64 (491)
T 3urh_A 20 FQSMMAYDLIVIGSGPGGYVCAIKAAQLGM-KVAVVEKRSTYGGTC 64 (491)
T ss_dssp ------CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred hhhcccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcc
Confidence 344556899999999999999999999998 699999999999954
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00021 Score=95.15 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||++||+||+.|+++|. +|+|+||....||
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~-~V~vlEK~~~~~g 44 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFPTRS 44 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCGGGS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCC
Confidence 4699999999999999999999998 6999999987765
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=4.1e-05 Score=94.08 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=32.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
|.+.+||+|||||+|||+||++|+++|+ +|+|+|++.
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~-~v~liE~~~ 37 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSL-KPVMYEGFM 37 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence 4455899999999999999999999999 699999964
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=96.33 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHh---CCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK---LGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~---~G~~~VtVlEk~~r 56 (2280)
..+||+|||||++|+++|+.|++ .|+ +|+|+|+.+.
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~ 42 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI 42 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence 35799999999999999999999 998 6999999653
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00021 Score=95.83 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
++++||+|||||++||+||++|+++ |. +|+|+|+++.+|
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~~~ 74 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEED-EIIMVERGEYIS 74 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSCSS
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCC-CEEEEECCCCcc
Confidence 4467999999999999999999998 77 799999988764
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00031 Score=88.56 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 16 ~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
+...++.+|+|||||+||++||..|++.+. +|+|+|+++..+
T Consensus 4 ~~~~~~~~~vIvGgG~AGl~aA~~L~~~~~-~itlie~~~~~~ 45 (385)
T 3klj_A 4 HHHHKSTKILILGAGPAGFSAAKAALGKCD-DITMINSEKYLP 45 (385)
T ss_dssp ----CBCSEEEECCSHHHHHHHHHHTTTCS-CEEEECSSSSCC
T ss_pred ccccCCCCEEEEcCcHHHHHHHHHHhCCCC-EEEEEECCCCCC
Confidence 334456799999999999999999987787 699999987754
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00012 Score=94.72 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCC------------------------ceeecCEEECCCc
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNG------------------------VLSFQPIKIARKV 1372 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~------------------------~~~~~~i~Ig~~~ 1372 (2280)
++.||++|.|+...+ ..++||++|.||++|.|.+..+.++ ...++.++||++|
T Consensus 330 ~~~Ig~~~~I~~~~i---~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~ 406 (451)
T 1yp2_A 330 DSVIGEGCVIKNCKI---HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNA 406 (451)
T ss_dssp EEEECTTCEEEEEEE---ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTC
T ss_pred CeEECCCCEEcceEE---eccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCc
Confidence 578888888875333 2688999999999999976654443 1234567888888
Q ss_pred EECCCCEECCCC------EECCCCEECcCC-ccCCCCccc
Q 037878 1373 SVGPYAVIQKGS------VIGEEAEVAPLQ-KSEGGKPIL 1405 (2280)
Q Consensus 1373 ~iG~~~~i~pg~------~ig~~a~ig~~s-~v~~~~~~~ 1405 (2280)
+||++++|.+++ +||+++.||+++ .|.+++.+.
T Consensus 407 ~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~ 446 (451)
T 1yp2_A 407 RIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIP 446 (451)
T ss_dssp EECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEEC
T ss_pred EECCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEEC
Confidence 888888888763 556666666664 235555553
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=95.31 Aligned_cols=38 Identities=21% Similarity=0.050 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+||+|||+|++||++|..|+++|. +.+++|+.+..|+.
T Consensus 40 ~Dvi~IGaGp~gLa~A~~L~~~~~-~~~~~~~~~~~~~~ 77 (501)
T 4b63_A 40 HDLLCVGFGPASLAIAIALHDALD-PRLNKSASNIHAQP 77 (501)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHC-TTTCTTC----CCC
T ss_pred CcEEEEcccHHHHHHHHHHHhcCC-CceEEeccccCCCc
Confidence 699999999999999999999997 58888888887763
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.45 E-value=6e-05 Score=93.17 Aligned_cols=43 Identities=30% Similarity=0.459 Sum_probs=37.6
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+|+.++||+|||||++||+||+.|+++|+ +|+|+|++ .+||.+
T Consensus 4 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~-~~gg~~ 46 (325)
T 2q7v_A 4 PTAHDYDVVIIGGGPAGLTAAIYTGRAQL-STLILEKG-MPGGQI 46 (325)
T ss_dssp CCCEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTGGG
T ss_pred CccccCCEEEECCCHHHHHHHHHHHHcCC-cEEEEeCC-CCCccc
Confidence 34456799999999999999999999998 69999998 788844
|
| >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=1.2e-05 Score=78.60 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCC--------CccccCCCChhhcccchHHHHHHHHHHHHHhCCccC---cccccCcccHHHHHHHH
Q 037878 1082 IVEFLKGLVSEQTGIP--------ITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVG---AVDIFTATCIADLASFS 1150 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~~--------~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~---~~di~~~pti~~LA~~l 1150 (2280)
+.+.+.++++++++.+ ++.|+.+++|.++|.|||.++.++..|.+.||+.++ ..++...+|+++|++++
T Consensus 5 i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~~i 84 (92)
T 1fh1_A 5 LTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAV 84 (92)
T ss_dssp CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC-----------------CTTTSTHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHHHH
Confidence 4567888999998854 347899999999999999999999999999999998 77899999999999999
Q ss_pred Hhh
Q 037878 1151 ENL 1153 (2280)
Q Consensus 1151 ~~~ 1153 (2280)
.+.
T Consensus 85 ~~~ 87 (92)
T 1fh1_A 85 RGL 87 (92)
T ss_dssp HC-
T ss_pred HHH
Confidence 764
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.42 E-value=4.7e-05 Score=99.07 Aligned_cols=41 Identities=32% Similarity=0.628 Sum_probs=38.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+++||+|||||++||+||+.|++.|+ +|+|+||++.+||.|
T Consensus 3 ~~~DVvVIGgG~aGl~aA~~l~~~G~-~V~liEk~~~~GG~~ 43 (466)
T 3l8k_A 3 LKYDVVVIGAGGAGYHGAFRLAKAKY-NVLMADPKGELGGNC 43 (466)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECTTSSSSHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCCCCcc
Confidence 45799999999999999999999998 699999999999955
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00038 Score=91.82 Aligned_cols=51 Identities=8% Similarity=-0.027 Sum_probs=37.7
Q ss_pred HHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 188 YTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 188 ~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
+.....+.+++.|++++.+ +|++|+.++++..+.+++.+| +++++|.||.|
T Consensus 175 l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g--~~~~ad~vV~A 225 (511)
T 2weu_A 175 VARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQH--GEISGDLFVDC 225 (511)
T ss_dssp HHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSS--CEEECSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCC--CEEEcCEEEEC
Confidence 3333333444578999999 999999866654456777788 47999999998
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.41 E-value=7e-05 Score=92.27 Aligned_cols=44 Identities=32% Similarity=0.533 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 16 ~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
..|+.++||+|||||++|++||+.|+++|+ +|+|+|+ +.+||.+
T Consensus 11 ~~m~~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~-~~~gg~~ 54 (319)
T 3cty_A 11 EEKERDFDVVIVGAGAAGFSAAVYAARSGF-SVAILDK-AVAGGLT 54 (319)
T ss_dssp ---CCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SSTTGGG
T ss_pred ccccCCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeC-CCCCccc
Confidence 344556899999999999999999999998 6999999 5788843
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=8.6e-05 Score=97.97 Aligned_cols=47 Identities=21% Similarity=0.421 Sum_probs=41.2
Q ss_pred cCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 14 LHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 14 ~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.+.++.++||+|||||++|++||++|++.|+ +|+|+|+++.+||.|
T Consensus 36 ~~~~~~~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~ 82 (523)
T 1mo9_A 36 VDENDPREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPFLGGSC 82 (523)
T ss_dssp CCTTCCSCBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSCHH
T ss_pred cCCCCCCcCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCcc
Confidence 34455667899999999999999999999998 699999999899854
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00023 Score=93.63 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=34.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
.++||+|||||++|++||++|+++|+ +|+|+|+ +.||.
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~-~v~lie~--~~GG~ 248 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGI-RTGLMGE--RFGGQ 248 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS--STTGG
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCC-eEEEEEC--CCCCc
Confidence 46799999999999999999999998 6999986 57874
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00019 Score=97.08 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHh-----CCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAK-----LGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~-----~G~~~VtVlEk~~ri 57 (2280)
+.||+|||||++||++|..|++ .|+ +|+||||++..
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi-~v~viE~~~~~ 48 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRSTK 48 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCC-CEEEEeCCCCC
Confidence 4699999999999999999999 999 69999997643
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.38 E-value=6.8e-05 Score=98.08 Aligned_cols=39 Identities=28% Similarity=0.590 Sum_probs=36.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++||+||++|+++|+ +|+|+|| +.+||.|
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~-~V~liEk-~~~GG~~ 64 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGK-RVAIAEE-YRIGGTC 64 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SCTTHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcC-EEEEEeC-CCCCCce
Confidence 5799999999999999999999998 6999999 7899955
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=92.07 Aligned_cols=39 Identities=33% Similarity=0.535 Sum_probs=34.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.+++||+|||||++|+++|++|+++|. +|+|+||+...+
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~~ 42 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPED 42 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCCC
Confidence 356899999999999999999999998 699999987443
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=93.52 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=36.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+++++||+|||||++||++|+.|+++|+ +|+||||++.++.
T Consensus 23 ~~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~ 63 (398)
T 2xdo_A 23 LLSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDNDREA 63 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSSSTTC
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCccc
Confidence 3456899999999999999999999999 6999999887654
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=94.39 Aligned_cols=41 Identities=34% Similarity=0.826 Sum_probs=38.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
..+||+|||||++||+||++|+++|+ +|+|||+++++||..
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~~~GG~l 161 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYDRMGGLL 161 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSCSTHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCCee
Confidence 46799999999999999999999999 699999999999964
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=88.21 Aligned_cols=36 Identities=50% Similarity=0.605 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHH---h-CCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALA---K-LGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La---~-~G~~~VtVlEk~~ri 57 (2280)
+.||+|||||++||+||+.|+ + +|. +|+|+||....
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~-~V~vlEK~~~~ 61 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAVE 61 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCTT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCC-eEEEEeCcCCC
Confidence 479999999999999999999 6 898 69999998753
|
| >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00019 Score=72.26 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
.+++.++|++++++.++ |..+++|+ ++|.|||..+.++..|.++||++++..++....|+++|++++.+..
T Consensus 28 ~~ei~~~v~~il~e~l~-----I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~~I~~~l 99 (113)
T 2cgq_A 28 EEAINATIQRILRTDRG-----ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWF 99 (113)
T ss_dssp HHHHHHHHHHHHTCCSC-----CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC-----CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 45678889999999988 67889995 9999999999999999999999999999999999999999998754
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00011 Score=95.54 Aligned_cols=39 Identities=31% Similarity=0.640 Sum_probs=36.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++||+||++|+++|+ +|+|+|| +.+||.|
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~-~V~liEk-~~~GG~~ 43 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGK-KVAIAEE-FRYGGTC 43 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTC-CEEEEES-SCTTHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCC-EEEEEeC-CCCCCcc
Confidence 5799999999999999999999998 6999999 8899954
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00092 Score=87.15 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
++||+|||||++|++||.+|++. |. +|+|+|+++..|
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~~~ 74 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENA-NVVTLEKGEIYS 74 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSSSCCS
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCC
Confidence 46999999999999999999996 87 699999987664
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=87.43 Aligned_cols=40 Identities=35% Similarity=0.605 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~riGG~ 60 (2280)
.++||+|||||++||+||+.|+++ |. +|+|+||++.+||.
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~~~gg~ 78 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVSPGGG 78 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSSCCTT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCCCCCCc
Confidence 357999999999999999999997 98 69999999999873
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00099 Score=89.01 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=32.5
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
+||+|||||++||+||++|+++ |+ +|+|+|+++..|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~-~V~lie~~~~~~ 39 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETA-EIIMFERGEYVS 39 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSS-EEEEECSSSCSS
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCCcc
Confidence 5899999999999999999998 67 799999987654
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.001 Score=84.73 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~r 56 (2280)
.|+|+|||||++|++||.+|++.|.+ +|+|+|+++.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~ 38 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET 38 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence 36899999999999999999988742 6999999886
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00011 Score=95.96 Aligned_cols=43 Identities=40% Similarity=0.844 Sum_probs=38.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
|+.++||+|||||++|++||++|++.|+ +|+|+|+++.+||.|
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~ 45 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTLGGVC 45 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSCSSHHH
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCce
Confidence 4446899999999999999999999998 699999999999854
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00033 Score=89.66 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=60.2
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGAL 1652 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~ 1652 (2280)
++.||++|.| ..+.+. .+.||++|+|+++|.| +.++||++|+||.++.|.. +.||+++.||++
T Consensus 324 ~~~ig~~~~I-~~~~i~---~~~ig~~~~I~~~~~i------------~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~ 386 (420)
T 3brk_X 324 SSVVSGDCII-SGAALN---RSLLFTGVRANSYSRL------------ENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEG 386 (420)
T ss_dssp SCEECSSCEE-ESCEEE---SCEECTTCEECTTCEE------------EEEEECTTCEECTTCEEEE-EEECTTCEECTT
T ss_pred CCEECCCCEE-cCCEEe---CcEEcCCCEECCCCEE------------cceEEcCCCEECCCCEEec-eEECCCCEECCC
Confidence 5889999999 554442 4899999999999988 4679999999999999985 999999999999
Q ss_pred ccccCCCc
Q 037878 1653 SVAPMHSV 1660 (2280)
Q Consensus 1653 s~v~~~~~ 1660 (2280)
++|.++..
T Consensus 387 ~~i~~~~~ 394 (420)
T 3brk_X 387 LIVGEDPE 394 (420)
T ss_dssp CEESSCHH
T ss_pred CEEeCCCC
Confidence 99987743
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00015 Score=94.36 Aligned_cols=40 Identities=33% Similarity=0.682 Sum_probs=37.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++|++||++|++.|+ +|+|+|+++.+||.|
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~ 41 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGM-KTACVEKRGALGGTC 41 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCcC
Confidence 4799999999999999999999998 699999999999954
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=87.34 Aligned_cols=38 Identities=45% Similarity=0.685 Sum_probs=35.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG 59 (2280)
++||+|||||++||+||+.|+++ |. +|+|+|+++.+||
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~-~V~LiEk~~~~GG 118 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDL-RITIVEAGVAPGG 118 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTS-CEEEEESSSSCCT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCC-EEEEEeCCCccCC
Confidence 57999999999999999999997 98 6999999999887
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=93.65 Aligned_cols=42 Identities=29% Similarity=0.630 Sum_probs=37.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
|+.++||+|||||++|++||++|++.|+ +|+|+|++ .+||.|
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~-~~GG~~ 42 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGA-QVTLIERG-TIGGTC 42 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS-STTHHH
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC-CCCccc
Confidence 3456899999999999999999999998 69999998 789854
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=88.70 Aligned_cols=40 Identities=33% Similarity=0.567 Sum_probs=36.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEE-EecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTL-LEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtV-lEk~~riGG~~ 61 (2280)
.++||+|||||++||+||+.|+++|+ +|+| +|| +.+||.+
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~li~e~-~~~gG~~ 43 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGL-KNVVMFEK-GMPGGQI 43 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTC-SCEEEECS-SSTTGGG
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC-CeEEEEeC-CCCCcee
Confidence 35799999999999999999999998 6999 999 7889864
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00017 Score=93.59 Aligned_cols=41 Identities=34% Similarity=0.618 Sum_probs=36.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.++||+|||||++|++||.+|++.|+ +|+|+|++ .+||.|
T Consensus 2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~-~~GG~~ 42 (463)
T 2r9z_A 2 TQHFDLIAIGGGSGGLAVAEKAAAFGK-RVALIESK-ALGGTC 42 (463)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTHHH
T ss_pred CccCcEEEECCCHHHHHHHHHHHhCCC-cEEEEcCC-CCCCcC
Confidence 346899999999999999999999998 69999997 789854
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00019 Score=93.55 Aligned_cols=42 Identities=38% Similarity=0.745 Sum_probs=38.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.++||+|||||++|++||.+|++.|+ +|+|+|+++.+||.+
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~-~V~liE~~~~~GG~~ 45 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGALGGTC 45 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSCCSH
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCccccc
Confidence 346899999999999999999999998 699999999999954
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=97.17 Aligned_cols=45 Identities=40% Similarity=0.620 Sum_probs=40.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
...++||+|||||++||+||+.|+++|+ +|+|+|+++++||.+..
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~~~GG~~~~ 432 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGGRVTQ 432 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTHHHH
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCEeee
Confidence 3456899999999999999999999998 69999999999997643
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00025 Score=82.86 Aligned_cols=35 Identities=40% Similarity=0.469 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
+++||+|||||++|++||+.|++.|. +|+|+|++.
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~~ 36 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQSL 36 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCG
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence 45899999999999999999999998 699999983
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=94.10 Aligned_cols=42 Identities=33% Similarity=0.614 Sum_probs=36.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC--------CCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH--------TVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~--------riGG~~ 61 (2280)
+.++||+|||||++|++||.+|++.|. +|+|+||++ .+||.|
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~-~V~liEk~~~~~~~~~~~~GGtc 79 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDFVTPTPLGTRWGLGGTC 79 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCCCCCTTCCCCCTTCHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeccCccccccCCCccccc
Confidence 346799999999999999999999998 699999965 788844
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=88.74 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 16 PCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 16 ~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
..+++++||+|||||++||+||+.|+++|+ +|+|+|++ .+||.
T Consensus 9 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~-~~gg~ 51 (335)
T 2a87_A 9 RAHHPVRDVIVIGSGPAGYTAALYAARAQL-APLVFEGT-SFGGA 51 (335)
T ss_dssp -CCCCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEECCS-SCSCG
T ss_pred cccCCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCc
Confidence 344556899999999999999999999998 69999975 67774
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00012 Score=95.85 Aligned_cols=42 Identities=38% Similarity=0.740 Sum_probs=38.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.++||+|||||++|++||+.|++.|+ +|+|+|+++.+||.|
T Consensus 3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~ 44 (478)
T 1v59_A 3 NKSHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTC 44 (478)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCcCCcc
Confidence 345799999999999999999999998 699999999999854
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00016 Score=93.60 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=36.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.++||+|||||++|++||++|++.|+ +|+|+|++ .+||.|
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~-~~GG~~ 42 (450)
T 1ges_A 2 TKHYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAK-ELGGTC 42 (450)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESS-CTTHHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-eEEEEcCC-CCCCcc
Confidence 346899999999999999999999998 69999997 789855
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00022 Score=91.59 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
+++||+|||||++||++|+.|+++|+ +|+|+||++
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence 45799999999999999999999999 699999976
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00015 Score=89.88 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=35.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEec----CCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK----YHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk----~~riGG~ 60 (2280)
+++||+|||||++|++||+.|+++|+ +|+|+|+ ...+||.
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~ 50 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGWMANDIAPGGQ 50 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSBTTBCTTCG
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccCccccCCCce
Confidence 35799999999999999999999998 6999999 5667764
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00018 Score=93.90 Aligned_cols=41 Identities=34% Similarity=0.793 Sum_probs=37.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++|++||..|++.|+ +|+|+|+++.+||.|
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~~GG~~ 45 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGF-KTVCIEKNETLGGTC 45 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSSHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCcCCcc
Confidence 45799999999999999999999998 699999999999954
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00016 Score=94.73 Aligned_cols=44 Identities=25% Similarity=0.606 Sum_probs=37.9
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHh-CCCCceEEEe--------cCCCCCceE
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLE--------KYHTVGGMC 61 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlE--------k~~riGG~~ 61 (2280)
+|..++||+|||||++|++||++|++ .|+ +|+|+| +++.+||.|
T Consensus 3 ~M~~~~dvvVIGgG~aGl~aA~~la~~~G~-~V~liE~~~~~~~~~~~~~GG~~ 55 (495)
T 2wpf_A 3 HMSKAFDLVVIGAGSGGLEAGWNAATLYGK-RVAVVDVQTSHGPPFYAALGGTC 55 (495)
T ss_dssp CCCEEEEEEEECCSHHHHHHHHHHHHHHCC-CEEEEESCSSSBTTTBCBTTHHH
T ss_pred CcccccCEEEECCChhHHHHHHHHHHhcCC-eEEEEecccccccccCCCCCCee
Confidence 34446899999999999999999999 998 699999 467889854
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00017 Score=88.75 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=35.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
|+++||+|||||++||+||+.|+++|+ +|+|+|+ +.+||.
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~-~~~gg~ 42 (320)
T 1trb_A 3 TKHSKLLILGSGPAGYTAAVYAARANL-QPVLITG-MEKGGQ 42 (320)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECC-SSTTGG
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEcc-CCCCce
Confidence 346799999999999999999999998 6999997 478884
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00019 Score=93.64 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=36.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.++||+|||||++|++||++|++.|. +|+|+|++ .+||.|
T Consensus 9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~-~V~liE~~-~~GG~~ 49 (479)
T 2hqm_A 9 TKHYDYLVIGGGSGGVASARRAASYGA-KTLLVEAK-ALGGTC 49 (479)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTSC-CEEEEESS-CTTHHH
T ss_pred cccCCEEEEcCCHHHHHHHHHHHHCCC-cEEEEeCC-CcCCcC
Confidence 346899999999999999999999998 69999997 788855
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00024 Score=86.04 Aligned_cols=37 Identities=43% Similarity=0.665 Sum_probs=34.9
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG 59 (2280)
.||+|||||++||+||+.|+++ |+ +|+|+|+++.+||
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~-~V~v~e~~~~~gg 104 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGG 104 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCccccc
Confidence 4999999999999999999998 98 6999999999987
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00018 Score=93.87 Aligned_cols=40 Identities=33% Similarity=0.639 Sum_probs=36.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++||+||++|++.|+ +|+|+|++ .+||.|
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~-~V~liE~~-~~GG~~ 58 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGA-RAAVVESH-KLGGTC 58 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCcc
Confidence 46899999999999999999999998 69999975 889854
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0002 Score=89.58 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=32.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCC------CCceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLG------YRNVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G------~~~VtVlEk~~riGG 59 (2280)
+||+|||||++||++|++|+++| . +|+|+|++...+|
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~-~V~vlE~~~~~~~ 43 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPL-DIKVYADRFTPLT 43 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSC-EEEEEESSCGGGS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCc-eEEEEECCCCCCC
Confidence 59999999999999999999998 7 6999999875443
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00027 Score=91.72 Aligned_cols=39 Identities=36% Similarity=0.704 Sum_probs=36.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+||+|||||++|++||.+|++.|+ +|+|+|+++.+||.|
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~ 40 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGM-KVGVVEKEKALGGTC 40 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCC-eEEEEeCCCCCCCcc
Confidence 699999999999999999999998 699999999999954
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00035 Score=95.69 Aligned_cols=44 Identities=34% Similarity=0.548 Sum_probs=39.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t 63 (2280)
..++||+|||||++||+||+.|+++|+ +|+|+|+++++||.+..
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~-~Vtlie~~~~~GG~~~~ 430 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIGGHLNQ 430 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCeeee
Confidence 346799999999999999999999998 69999999999997643
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00023 Score=93.12 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=35.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++||+||.+|++.|. +|+|+|++ .+||.|
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~-~V~liE~~-~~GGtc 46 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGG-AYGTTC 46 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCS-CEEEEESS-CSSCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCC-CCCCcc
Confidence 4799999999999999999999998 69999996 599865
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=91.69 Aligned_cols=40 Identities=38% Similarity=0.771 Sum_probs=36.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++|++||.+|++.|+ +|+|+|+ +.+||.|
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~-~~~GG~~ 43 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEG-QALGGTC 43 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECS-SCTTHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEcc-CCCCCcC
Confidence 45799999999999999999999998 6999999 8899965
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00048 Score=87.06 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.8
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~ri 57 (2280)
+||+|||||++||++|+.|+++ |+ +|+|+||++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~-~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLW-AIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC-CEEEEECCCCC
Confidence 4899999999999999999999 98 69999998876
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00038 Score=91.11 Aligned_cols=41 Identities=32% Similarity=0.592 Sum_probs=36.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEec--------CCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK--------YHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk--------~~riGG~~ 61 (2280)
.++||+|||||++||+||.+|++.|. +|+|+|| +..+||.|
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~-~V~liEk~~~~~~~~~~~~GGtc 53 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGK-KVAVADYVEPSPRGTKWGLGGTC 53 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCCCCCTTSCCCCTTCHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEEecccccccccCCcCCee
Confidence 45799999999999999999999998 6999998 56788854
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00036 Score=91.24 Aligned_cols=40 Identities=25% Similarity=0.628 Sum_probs=36.1
Q ss_pred CCeEEEECccHHHHHHHHHHHh-CCCCceEEEe--------cCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLE--------KYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlE--------k~~riGG~~ 61 (2280)
++||+|||||++|++||++|++ .|+ +|+|+| +++.+||.|
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~-~V~liE~~~~~~~~~~~~~GG~c 51 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKK-RVAVIDLQKHHGPPHYAALGGTC 51 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCC-CEEEEESCSSSBTTTBSCTTCHH
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCC-EEEEEecccccccccCCCcCccc
Confidence 5799999999999999999999 998 699999 467889854
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0003 Score=91.41 Aligned_cols=39 Identities=31% Similarity=0.640 Sum_probs=35.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++|++||..|++.|+ +|+|+|++ .+||.+
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~-~V~liE~~-~~gG~~ 41 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGL-STAIVEPK-YWGGVC 41 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS-CTTHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC-CCCCcc
Confidence 4799999999999999999999998 69999998 788844
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00033 Score=90.99 Aligned_cols=39 Identities=36% Similarity=0.659 Sum_probs=35.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++|++||..|++.|+ +|+|+|+++ +||.|
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~-~V~lie~~~-~GG~~ 44 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGL-KVLAVEAGE-VGGVC 44 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC-TTHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC-CCCCC
Confidence 5799999999999999999999998 699999987 89854
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00046 Score=88.00 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=33.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG 59 (2280)
++||+|||||++|+++|+.|+++ |. +|+|+|+++..+|
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~-~V~vlE~~~~~~~ 75 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGR-SLLLVEEGGLPNE 75 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSCSSCT
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCc
Confidence 37999999999999999999999 98 6999999865554
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00033 Score=91.92 Aligned_cols=39 Identities=38% Similarity=0.591 Sum_probs=35.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhC---CCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL---GYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~---G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++|++||++|++. |+ +|+|+|+++ +||.|
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~-~V~liE~~~-~GG~~ 43 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETT-QVTVIDCDG-IGGAA 43 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTE-EEEEEESSC-TTHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcC-EEEEEeCCC-cCCcc
Confidence 47999999999999999999999 98 699999988 99954
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00054 Score=89.52 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=31.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEec
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk 53 (2280)
+.++||+|||||++|++||++|+++|+ +|+|+||
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~-~V~liEk 40 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGA-RVACLDF 40 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC-EEEEEEe
Confidence 346899999999999999999999998 6999995
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00063 Score=90.38 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=34.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||++|+++|+.|+++|. +|+|+||++..+|
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~-~V~LlE~~~~~~G 69 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGI-KTGLIEMQDFAEG 69 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTTCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC
Confidence 5799999999999999999999999 6999999876665
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=91.16 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=37.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+.++||+|||||++|++||+.|+++|+ +|+|+||.+..||.+
T Consensus 44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~-~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 44 DIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEIDSGLK 85 (623)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCSSSS
T ss_pred cccCCEEEECCcHHHHHHHHHHHhCCC-cEEEEeccCCCCCcc
Confidence 345799999999999999999999999 699999999999843
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00052 Score=89.97 Aligned_cols=39 Identities=33% Similarity=0.626 Sum_probs=35.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++|++||.+|++.|. +|+|+|++ .+||.|
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~-~~GG~c 40 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNA-KVALVEKS-RLGGTC 40 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-STTHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC-CcCccc
Confidence 4799999999999999999999998 69999998 588854
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=89.29 Aligned_cols=39 Identities=44% Similarity=0.757 Sum_probs=35.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++|++||.+|++.|+ +|+|+|++ .+||.+
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~-~~gG~~ 41 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG-NLGGVC 41 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECC-CCCCcC
Confidence 4799999999999999999999998 69999998 889854
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0037 Score=81.02 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+.+|..|++.|. +|+|+|+.+++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 204 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGA-EVTLIEYMPEI 204 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEEcCCcc
Confidence 3689999999999999999999998 69999998765
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00087 Score=91.17 Aligned_cols=42 Identities=33% Similarity=0.585 Sum_probs=38.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
.++||+|||||++||+||..|+++|+ +|+|+|+++++||.+.
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~gg~~~ 413 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFN 413 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCeee
Confidence 45799999999999999999999998 6999999999999753
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0014 Score=83.94 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=49.8
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQ 1396 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s 1396 (2280)
++.||++|.|....+ ...+||++|.|+++|.|. ..+||++|+||++|+|.. ++||+|+.||+++
T Consensus 324 ~~~ig~~~~I~~~~i---~~~~ig~~~~I~~~~~i~------------~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~ 387 (420)
T 3brk_X 324 SSVVSGDCIISGAAL---NRSLLFTGVRANSYSRLE------------NAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGL 387 (420)
T ss_dssp SCEECSSCEEESCEE---ESCEECTTCEECTTCEEE------------EEEECTTCEECTTCEEEE-EEECTTCEECTTC
T ss_pred CCEECCCCEEcCCEE---eCcEEcCCCEECCCCEEc------------ceEEcCCCEECCCCEEec-eEECCCCEECCCC
Confidence 567777777733233 246777777777777775 345899999999998884 8888888888888
Q ss_pred ccCC
Q 037878 1397 KSEG 1400 (2280)
Q Consensus 1397 ~v~~ 1400 (2280)
+|..
T Consensus 388 ~i~~ 391 (420)
T 3brk_X 388 IVGE 391 (420)
T ss_dssp EESS
T ss_pred EEeC
Confidence 7754
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00087 Score=86.69 Aligned_cols=39 Identities=28% Similarity=0.518 Sum_probs=34.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG 59 (2280)
+++||+|||||++||+||+.|++. |. +|+|+|+++.+++
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~V~vie~~~~~~~ 42 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKPEW-DVKVFEATEWVSH 42 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSSCCC-
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCcCC-CEEEEECCCcccc
Confidence 357999999999999999999998 66 7999999987764
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00063 Score=87.75 Aligned_cols=41 Identities=37% Similarity=0.425 Sum_probs=37.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-C------CCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK-L------GYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~-~------G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++|++||.+|++ . |+ +|+|||+++.+||.+
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~-~V~lie~~~~~gg~~ 49 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLV 49 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSSCSTHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC-eEEEEecCCCCCCcc
Confidence 35799999999999999999999 7 88 699999999999865
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0013 Score=79.92 Aligned_cols=37 Identities=32% Similarity=0.502 Sum_probs=34.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+||+|||||++|+.||+.|+++|+ +|+|+|++...+.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~-~V~liE~~~~~~t 38 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGV-PVRLFEMRPKRMT 38 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTTSCC
T ss_pred CCEEEECchHHHHHHHHHHHHCCC-cEEEEeccCCcCC
Confidence 689999999999999999999999 6999999886654
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00093 Score=86.47 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=33.9
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
+||+|||||++||+||++|+++ |. +|+|+|+++.+|
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~~g 40 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQA-EISLIDKQATVG 40 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSCCS
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCc
Confidence 6999999999999999999998 87 799999999887
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00086 Score=89.98 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=34.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||++||+||+.|+++|. +|+|+||....+|
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~-~V~vlEK~~~~~g 42 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPVKRS 42 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCGGGS
T ss_pred cccEEEECchHHHHHHHHHHHHCCC-cEEEEeccCCCCC
Confidence 5799999999999999999999998 6999999887655
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0049 Score=77.78 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 180 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGY-QLDVVAPCEQV 180 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCcch
Confidence 5789999999999999999999998 69999997764
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00037 Score=106.49 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC-CccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1082 IVEFLKGLVSEQTGIP-ITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~~-~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
.++.|.++|+++|+++ .++|+.+++||+||||||+|++|.+.+++.+|+.+++.+|++ +|+..|++.+...
T Consensus 2124 ~~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~~~~~ 2195 (2512)
T 2vz8_A 2124 SQKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQELSSKT 2195 (2512)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHHHhhc
Confidence 4567999999999986 467999999999999999999999999999999999999988 8999999987653
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=86.54 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC-CCCc
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH-TVGG 59 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~-riGG 59 (2280)
...++||+|||||++|++||+.|++.|. +|+|+|++. .+|+
T Consensus 18 ~~~~yDVIVIGgG~AGl~AAlaLAr~G~-kVlLIEk~~~~iG~ 59 (641)
T 3cp8_A 18 GSHMYDVIVVGAGHAGCEAALAVARGGL-HCLLITSDLSAVAR 59 (641)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGGTTC
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCC-cEEEEEecccccCC
Confidence 3446899999999999999999999998 699999975 4654
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=85.00 Aligned_cols=36 Identities=44% Similarity=0.607 Sum_probs=32.9
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
||+|||||++||+||+.|+++|. +|+|+||. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~-~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGK-KVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC-CCCch
Confidence 79999999999999999999998 69999998 66663
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=85.23 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=34.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC---CCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLG---YRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G---~~~VtVlEk~~riG 58 (2280)
+++||+|||||++|++||..|++.| . +|+|+|+++.+|
T Consensus 34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~-~V~lie~~~~~~ 74 (490)
T 2bc0_A 34 WGSKIVVVGANHAGTACIKTMLTNYGDAN-EIVVFDQNSNIS 74 (490)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHHGGGS-EEEEECSSSCCS
T ss_pred cCCcEEEECCCHHHHHHHHHHHhcCCCCC-eEEEEECCCCCC
Confidence 3589999999999999999999988 7 699999988764
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=86.54 Aligned_cols=35 Identities=37% Similarity=0.420 Sum_probs=32.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHh---CCCCceEEEecCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK---LGYRNVTLLEKYH 55 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~---~G~~~VtVlEk~~ 55 (2280)
..+||+|||||++|++||+.|++ .|. +|+|+|+.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCC
Confidence 35799999999999999999999 998 799999965
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=93.24 Aligned_cols=41 Identities=41% Similarity=0.827 Sum_probs=37.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.+||+|||||++||+||++|+++|+++|+|||+++++||..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~ 227 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 227 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence 57999999999999999999999982399999999999964
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0007 Score=88.45 Aligned_cols=40 Identities=33% Similarity=0.592 Sum_probs=36.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
++||+|||||++||+||++|+++ + +|+|+|+++++||.+.
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~-~V~vie~~~~~GG~~~ 147 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-L-TVALIEERGWLGGDMW 147 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-C-CEEEECTTSSSSCSGG
T ss_pred cCCEEEECccHHHHHHHHHHHhc-C-CEEEEeCCCCCCCeee
Confidence 45899999999999999999999 7 6999999999999653
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=93.03 Aligned_cols=41 Identities=34% Similarity=0.566 Sum_probs=38.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~ 62 (2280)
++||+|||||++||+||.+|++.|+ +|+|+|+++++||.+.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~-~V~lie~~~~~GG~~~ 168 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGA-RVMLLDERAEAGGTLL 168 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSGGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCCceec
Confidence 4689999999999999999999998 6999999999999876
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=82.54 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~ri 57 (2280)
+++||+|||||++|++||..|+++|++ +|+|+|+++.+
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~ 41 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI 41 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCC
Confidence 458999999999999999999999973 59999998654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0018 Score=85.45 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHHhH-CCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 188 YTSLWQKLSKY-LPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 188 ~~~l~~~la~~-lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
+.......+++ .|++++.+ +|++|+.+++++.+.+++.+|+ +++||.||.|
T Consensus 177 l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~--~i~ad~vV~A 228 (526)
T 2pyx_A 177 FSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNG--EISGQLFIDC 228 (526)
T ss_dssp HHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSC--EEECSEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCC--EEEcCEEEEC
Confidence 33444444455 78999999 6999998766654577777773 5999999998
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=83.49 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=37.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC--CCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G--~~~VtVlEk~~riGG~~ 61 (2280)
.+||+|||||++|++||..|++.| . +|+|||+++++||.+
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~-~V~vie~~~~~gg~~ 47 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGLV 47 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTHH
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCC-CEEEEeCCCcCCcee
Confidence 579999999999999999999998 7 699999999999865
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=84.29 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=34.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC-CCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH-TVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~-riGG 59 (2280)
.++||+|||||++|++||+.|++.|. +|+|+|++. .+|+
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~-kVlLIEk~~~~iG~ 65 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGA-KTAMFVLNADTIGQ 65 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGGTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-CEEEEEecccccCC
Confidence 35899999999999999999999998 699999984 5653
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0014 Score=83.69 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=33.5
Q ss_pred CeEEEECccHHHHHHHHHHHh---CCCCceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAK---LGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~---~G~~~VtVlEk~~riGG 59 (2280)
+||+|||||++||+||++|++ .|+ +|+|+|+++..++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~-~V~vie~~~~~~~ 41 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRFSYF 41 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGS-EEEEEESSSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEeCCCCcee
Confidence 589999999999999999999 898 7999999986543
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=85.29 Aligned_cols=40 Identities=33% Similarity=0.657 Sum_probs=34.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC--------CCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY--------HTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~--------~riGG~~ 61 (2280)
++||+|||||++|++||.++++.|. +|+|+|+. ..+||-|
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~-kValIE~~~~~~~~~k~~lGGtC 89 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGA-RVLLFDYVKPSSQGTKWGIGGTC 89 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTC-CEEEECCCCCCTTCCCCCSSHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccccccccccCCCCCcc
Confidence 3799999999999999999999998 69999974 4578844
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=84.83 Aligned_cols=38 Identities=34% Similarity=0.498 Sum_probs=33.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC-CCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH-TVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~-riG 58 (2280)
.++||+|||||++|++||+.|++.|. +|+|+|++. .+|
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~-kVlLIEk~~~~iG 65 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQ-QTLLLTHNIDTLG 65 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGGTT
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCC-CEEEEeecccccc
Confidence 45799999999999999999999998 699999974 454
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0025 Score=81.15 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=34.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCCCc
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVGG 59 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~riGG 59 (2280)
+||+|||||++||+||..|+++|++ +|+|+|+++..+.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y 41 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY 41 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCc
Confidence 5899999999999999999999972 3999999988764
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=86.89 Aligned_cols=38 Identities=29% Similarity=0.459 Sum_probs=34.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC--CCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G--~~~VtVlEk~~riGG 59 (2280)
+.||+|||||++||+||+.|+++| . +|+|+||....+|
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~-~V~vlEk~~~~~~ 44 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNA-KIALISKVYPMRS 44 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTC-CEEEEESSCGGGS
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCC-cEEEEeCCCCCCC
Confidence 469999999999999999999999 8 6999999877655
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0086 Score=77.24 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 202 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDAP 202 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC-EEEEEEeCCch
Confidence 4689999999999999999999998 69999997654
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=84.27 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 16 PCLPVNTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 16 ~~~~~~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
++++.++||+|||||++|++||..|+++ |. +|+|+|+++.++
T Consensus 6 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~-~V~lie~~~~~~ 49 (493)
T 1m6i_A 6 DKAPSHVPFLLIGGGTAAFAAARSIRARDPGA-RVLIVSEDPELP 49 (493)
T ss_dssp --CCSEEEEEEESCSHHHHHHHHHHHHHSTTC-EEEEEESSSSCC
T ss_pred CCCCCcCCEEEECChHHHHHHHHHHHhcCCCC-eEEEEeCCCCCC
Confidence 4456678999999999999999999887 76 699999998765
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=80.36 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYH 55 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~ 55 (2280)
+.++||+|||||++|++||..|++.|.+ +|+|+|+++
T Consensus 2 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~ 39 (384)
T 2v3a_A 2 SERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD 39 (384)
T ss_dssp --CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred CCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 3468999999999999999999999952 589999976
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0027 Score=80.82 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=34.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~riG 58 (2280)
+++||+|||||++|++||..|++.|++ +|+|+|+++.++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~ 45 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP 45 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence 457999999999999999999999973 499999987653
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.011 Score=77.05 Aligned_cols=37 Identities=35% Similarity=0.604 Sum_probs=33.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.++|+|||||.+|+-+|..|++.|. +|+|+|+++++.
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l 219 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQIG 219 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCCccc
Confidence 4789999999999999999999998 699999987763
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=85.55 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhC------CCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL------GYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~------G~~~VtVlEk~~riGG 59 (2280)
+.||+|||||++||+||+.|+++ |. +|+|+||....++
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~-~V~vleK~~~~~s 65 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEA-KILLVDKASLERS 65 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTC-CEEEECSSCTTTC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCC-cEEEEEecCCCCC
Confidence 47999999999999999999997 98 6999999876544
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0029 Score=84.91 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
..++||+|||||++||+||.+|+++|+ +|+|+|+.
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~-~v~liE~~ 139 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDYV 139 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCC-eEEEEecc
Confidence 346899999999999999999999998 69999983
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.012 Score=76.03 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
..++|+|||||.+|+.+|..|++.|. +|+|+|+++++.
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~l 185 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRPL 185 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCcccc
Confidence 35799999999999999999999998 699999987653
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.013 Score=75.83 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~-~V~lv~~~~~~ 202 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGA-EVIVLEYMDRI 202 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecCCcc
Confidence 4689999999999999999999998 69999997764
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=81.63 Aligned_cols=35 Identities=29% Similarity=0.562 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHh---CCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAK---LGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~---~G~~~VtVlEk~~r 56 (2280)
++||+|||||++|++||+.|++ .|+ +|+|+|++++
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~-~Vtlie~~~~ 41 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDY 41 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGS-EEEEECSSSE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcC-EEEEEeCCCC
Confidence 4799999999999999999999 888 6999999874
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0031 Score=81.43 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=32.9
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
+||+|||||++|++||..|++. |. +|+|+|+++.+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDA-EIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTS-EEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCC-eEEEEECCCccC
Confidence 5899999999999999999998 87 699999988765
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0033 Score=81.33 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=32.9
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riG 58 (2280)
+||+|||||++|++||.+|++. |. +|+|+|+++.+|
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~V~lie~~~~~~ 38 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDA-DVTAYEMNDNIS 38 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTC-EEEEEESSSCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCC
Confidence 5899999999999999999998 88 699999988764
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.02 Score=74.22 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+|+|+.+++
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 209 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGA-EVTVVEFAPRC 209 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHhCC-EEEEEecCCcc
Confidence 4789999999999999999999998 69999997765
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.021 Score=74.53 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=33.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 209 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGV-IVKVFGRSGSV 209 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTC-EEEEECCTTCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEECCcc
Confidence 4789999999999999999999998 69999998775
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.016 Score=74.77 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 205 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEI 205 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCcc
Confidence 4789999999999999999999998 69999997765
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.028 Score=73.05 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+++|+++++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 213 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGA-DVTAVEFLGHV 213 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC-EEEEEeccCcc
Confidence 4789999999999999999999998 69999998765
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.038 Score=71.42 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~-~Vtlv~~~~~~ 201 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGS-EVTVVALEDRL 201 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCcc
Confidence 4689999999999999999999998 69999987654
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.017 Score=73.58 Aligned_cols=37 Identities=43% Similarity=0.548 Sum_probs=33.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~ 178 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGL-SVTILEAGDEL 178 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCcc
Confidence 35789999999999999999999998 69999997664
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0051 Score=80.18 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=35.8
Q ss_pred CCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 15 ~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.+...++++|+|||||.+|++||..|+++++ +|+|+|++++
T Consensus 36 ~p~~~~KprVVIIGgG~AGl~~A~~L~~~~~-~VtLId~~~~ 76 (502)
T 4g6h_A 36 DPQHSDKPNVLILGSGWGAISFLKHIDTKKY-NVSIISPRSY 76 (502)
T ss_dssp CCCSCSSCEEEEECSSHHHHHHHHHSCTTTC-EEEEEESSSE
T ss_pred CCCCCCCCCEEEECCcHHHHHHHHHhhhCCC-cEEEECCCCC
Confidence 3445567799999999999999999999998 7999999874
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0055 Score=78.63 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=32.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVG 58 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~riG 58 (2280)
.+|+|||||++|++||.+|++.|.+ +|+|+|+++..+
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~ 38 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 38 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence 3699999999999999999999852 599999987654
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.031 Score=72.91 Aligned_cols=36 Identities=36% Similarity=0.536 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.+++
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 233 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGA-KVTVVEFLDTI 233 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeccccc
Confidence 4689999999999999999999998 69999987654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0058 Score=76.47 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=31.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..||+|||||++|++||..|++.| +|+|+|+++..
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g--~V~lie~~~~~ 42 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY--EVTVIDKEPVP 42 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS--EEEEECSSSSC
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC--CEEEEECCCCC
Confidence 369999999999999999999999 59999997753
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.032 Score=72.20 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=35.6
Q ss_pred CCCceEeCcceEEEEEcCCccEEEEEeC-CCceEEEEeCEEEEcC
Q 037878 199 LPTEVHCNSEVLAIRRDSTTVGVDVKHS-NGECEVMEFDKIIISG 242 (2280)
Q Consensus 199 lg~~I~l~t~V~~I~~~~~~v~V~v~t~-~G~~~~i~aD~VI~A~ 242 (2280)
.+.+|+++++|++|+.+++++.+.+... +|+.+++.+|.||+|+
T Consensus 329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~At 373 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILAT 373 (463)
T ss_dssp CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECC
T ss_pred CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEee
Confidence 5789999999999998888776666543 6755679999999983
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.049 Score=66.18 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||+|.+|+-.|..|++.|. +|+++++++++
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 178 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICK-KVYLIHRRDGF 178 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSS-EEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeeCCcc
Confidence 4789999999999999999999998 69999986543
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0059 Score=78.24 Aligned_cols=34 Identities=32% Similarity=0.606 Sum_probs=30.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCC--CCceEEEecCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLG--YRNVTLLEKYHT 56 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G--~~~VtVlEk~~r 56 (2280)
++|+|||||.+|++||.+|++.+ + +|||+|++++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~-~VtlI~~~~~ 38 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDL-KITLISDRPY 38 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTC-EEEEECSSSE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCC-eEEEEcCCCC
Confidence 58999999999999999999876 5 6999999875
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0079 Score=79.66 Aligned_cols=36 Identities=36% Similarity=0.459 Sum_probs=33.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|++|||||++|+++|.+|+++|. +|+|||+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~-~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence 45799999999999999999999998 6999999864
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.023 Score=73.72 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~ 212 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEI 212 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCcc
Confidence 4789999999999999999999998 69999997765
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.041 Score=71.50 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-.|..|++.|. +|+++|+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 220 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGS-ETHLVIRGETV 220 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-ceEEEEeCCcc
Confidence 4689999999999999999999998 69999997664
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.044 Score=71.31 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhC---CCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL---GYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~---G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-.|..|++. |. +|+++|+.+++
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~ 225 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDMI 225 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcC-eEEEEEcCCCc
Confidence 46899999999999999999999 98 69999997764
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.048 Score=71.25 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-.|..|++.|. +|+++|+.+++
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 217 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGV-PVTVVASQDHV 217 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCcc
Confidence 4689999999999999999999998 69999997764
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.049 Score=70.49 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+|+|+.+++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 206 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGV-DVTIVEFLPRA 206 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcCCcc
Confidence 4789999999999999999999998 69999997664
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.037 Score=70.79 Aligned_cols=37 Identities=35% Similarity=0.523 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~G~-~Vtlv~~~~~~ 184 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARV 184 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSST
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCCcc
Confidence 35789999999999999999999998 69999986553
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.02 Score=73.91 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 206 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARERI 206 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCCcc
Confidence 4689999999999999999999998 69999997765
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.058 Score=70.44 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.+++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 211 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRI 211 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSS
T ss_pred CCeEEEECChHHHHHHHHHHHHcCC-eEEEEecCCcc
Confidence 4689999999999999999999998 69999997764
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.067 Score=65.73 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
..++|+|||+|.+|+-+|..|++.|. +|+++++.++
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~~g~-~v~~v~~~~~ 207 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTKYGS-KVFMLVRKDH 207 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCc
Confidence 35789999999999999999999998 6999998654
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.055 Score=68.69 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||||.+|+-+|..|++.|. +|+++|+++++
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 180 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRL 180 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCCcc
Confidence 35799999999999999999999998 69999997654
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.053 Score=70.31 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++. |. +|+++|+.+++
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~-~Vtlv~~~~~~ 195 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGI-DTTVVELADQI 195 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCC-EEEEECSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCC-cEEEEEccCcc
Confidence 46899999999999999999999 98 69999987543
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.053 Score=70.57 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.+++
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~ 226 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGV-KTTLLHRGDLI 226 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCcc
Confidence 4689999999999999999999998 69999987654
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=77.52 Aligned_cols=37 Identities=30% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
..+|+||||||.||+++|.+|++.|..+|+||||...
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 3589999999999999999999998326999999765
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.089 Score=64.14 Aligned_cols=35 Identities=23% Similarity=0.553 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~ 179 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRDG 179 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCCc
Confidence 4689999999999999999999998 6999998654
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.063 Score=69.93 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhC---CCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL---GYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~---G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-.|..|++. |. +|+|+|+.+++
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~ 229 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGG-KVTLCYRNNLI 229 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTC-EEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEEcCCcc
Confidence 46899999999999999999999 98 69999987654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.079 Score=64.35 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||+|.+|+-+|..|++.|. +|+++++++++
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~-~v~~~~~~~~~ 182 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICS-KIYLIHRRDEF 182 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSS-EEEEECSSSSC
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEeCCCC
Confidence 4789999999999999999999997 69999986543
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0074 Score=79.41 Aligned_cols=37 Identities=35% Similarity=0.411 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.++|++|||||.+|+.+|.+|++ |. +|+|||+....+
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~-~VlvLEaG~~~~ 61 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KY-KVLVLERGSLPT 61 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TS-CEEEECSSBCGG
T ss_pred CcccEEEECccHHHHHHHHHHhc-CC-cEEEEecCCCcC
Confidence 45799999999999999999999 98 699999987654
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=76.17 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=34.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.++|++|||||++|+++|++|++.|. +|+|+|+..+.+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCC
Confidence 35799999999999999999999998 699999988665
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.059 Score=70.02 Aligned_cols=37 Identities=30% Similarity=0.569 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 221 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGK-KVRMIERNDHI 221 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTC-EEEEECCGGGT
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCCch
Confidence 35789999999999999999999998 69999986654
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.072 Score=68.59 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 182 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKK-TVHVFESLENL 182 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCcc
Confidence 4689999999999999999999998 69999997654
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=77.42 Aligned_cols=36 Identities=36% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-CCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlEk~~r 56 (2280)
.++|+||||||.+|+..|.+|++ .|+ +|+|||+...
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~~~~-~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSEDPDS-RVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhCCCC-eEEEEcCCCC
Confidence 36899999999999999999998 577 6999999643
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.09 Score=63.77 Aligned_cols=35 Identities=40% Similarity=0.580 Sum_probs=31.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||+|.+|+-+|..|++.|. +|+++|+.++
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~ 178 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE 178 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBS-EEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCC-EEEEEEeCcc
Confidence 4689999999999999999999997 6999998654
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.067 Score=70.23 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=32.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++|+|||||.+|+-.|..|++.|. +|+++|+.+++
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~-~Vtlv~~~~~~ 249 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEPL 249 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC-eEEEEEecCcc
Confidence 789999999999999999999998 69999997664
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.12 Score=66.43 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.+++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 184 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNY-NVNLIDGHERV 184 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSST
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCC-EEEEEEcCCch
Confidence 4689999999999999999999998 69999987654
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.092 Score=67.89 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.+++
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 207 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGV-QTHIIEMLDRA 207 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCCcC
Confidence 4689999999999999999999998 69999997654
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.079 Score=68.97 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=33.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||||.+|+-.|..|++.|. +|+|+|+++++
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 229 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGK-EVVLIDVVDTC 229 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC-eEEEEEcccch
Confidence 35789999999999999999999998 69999997664
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=94.56 E-value=0.12 Score=67.21 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 222 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHDKV 222 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CccEEEECCCHHHHHHHHHHHHcCC-eEEEEEeCCcc
Confidence 4689999999999999999999998 69999987654
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.077 Score=66.01 Aligned_cols=35 Identities=40% Similarity=0.520 Sum_probs=31.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~ 197 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAA-SVTLVHRGHE 197 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCC
Confidence 4689999999999999999999997 6999998654
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.13 Score=62.77 Aligned_cols=35 Identities=23% Similarity=0.505 Sum_probs=31.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~ 186 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFAD-EVTVIHRRDT 186 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeCCCc
Confidence 4789999999999999999999998 6999998654
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.023 Score=74.27 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|++|||||.+|+++|++|++.|. +|+|+|+....
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~~~ 46 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAGI-PTQIVEMGRSW 46 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCCS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCCCC
Confidence 446899999999999999999999998 69999997653
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.15 Score=62.45 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=32.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
..++|+|||+|.+|+-.|..|++.|. +|+++|++++
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~ 193 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDA 193 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHhcCC-eEEEEecCCc
Confidence 35789999999999999999999998 6999998654
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.12 Score=66.61 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.++
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vt~v~~~~~ 204 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGV-KTTLIYRGKE 204 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCc
Confidence 5689999999999999999999998 6999998764
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.14 Score=68.04 Aligned_cols=36 Identities=39% Similarity=0.493 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 186 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGI-KTTLLELADQV 186 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCCcc
Confidence 3689999999999999999999998 69999997654
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.057 Score=70.17 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-.|..|++.|. +|+|+|+++++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~-~Vtlv~~~~~~ 220 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMDGL 220 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEECCcc
Confidence 4789999999999999999999998 69999987664
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.19 Score=65.76 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=30.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.++++|||||..|+-.|..+++.|. +|||++++.
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~-~VTii~~~~ 256 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGY-DVTVAVRSI 256 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTC-CEEEEESSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC-eEEEecccc
Confidence 3689999999999999999999998 699998743
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.2 Score=64.80 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+++|+++++
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 211 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGS-KVTVLARNTLF 211 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEECCcc
Confidence 4689999999999999999999998 69999987654
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.032 Score=73.56 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=31.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYH 55 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~ 55 (2280)
..+|+||||||.||+++|.+|++. |. +|+|||+..
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~-~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNI-SVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTC-CEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCC-cEEEEecCC
Confidence 358999999999999999999975 66 699999976
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.004 Score=76.36 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHH
Q 037878 1076 KMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASF 1149 (2280)
Q Consensus 1076 ~~~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~ 1149 (2280)
..|.+++|+.|+++|+++||++ + +||||+| +++++++++. |++||+++||..
T Consensus 23 ~~P~~~~E~~la~iw~~vL~~~--~---~d~Ff~l-------~~l~~~~~~~----------f~~pt~~~la~~ 74 (319)
T 2hfk_A 23 GADTGAGAGMFRALFRQAVEDD--R---YGEFLDV-------LAEASAFRPQ----------FASPEACSERLD 74 (319)
T ss_dssp -------CCHHHHHHHHHHHTT--C---HHHHHHH-------HHHHHTTSCE----------ECSGGGCCSCCC
T ss_pred CCCCCchHHHHHHHHHHHHcCC--c---hHHHHHH-------HHHHHHHHHh----------cCCcchhhcccc
Confidence 3467889999999999999996 3 9999999 7888888654 899999988853
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.006 Score=74.69 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=10.8
Q ss_pred ccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHH
Q 037878 1111 GIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLA 1147 (2280)
Q Consensus 1111 GGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA 1147 (2280)
|||||+|+||+++|++.+|+++++.++|++||++.|+
T Consensus 1 GGdSL~a~~l~~rl~~~~g~~l~~~~lf~~pt~~~l~ 37 (316)
T 2px6_A 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLM 37 (316)
T ss_dssp -------------------------CCCCCTTSCSEE
T ss_pred CCchHHHHHHHHHHHHHHhhccchhhhhcCCCcCeeE
Confidence 8999999999999999999999999999999988775
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.037 Score=73.51 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-CCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlEk~~ri 57 (2280)
.++|++|||||.+|+++|.+|++ .|. +|+|+|+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~-~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKI-KVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTC-CEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEecCCcc
Confidence 35799999999999999999999 798 69999997654
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.036 Score=73.03 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC-CCCceEEEecCCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL-GYRNVTLLEKYHTVG 58 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~-G~~~VtVlEk~~riG 58 (2280)
.+.|++|||||.+|+++|++|++. |. +|+|+|+.....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~-~v~~~e~g~~~~ 50 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAV-SVALVEAGPDDR 50 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSCCCT
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCC-CEEEEecCCcCC
Confidence 357999999999999999999998 87 699999987653
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.33 Score=62.91 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~ 219 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGY-EPTVMVRS 219 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4689999999999999999999998 69999873
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.03 Score=73.68 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHh-CCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlEk~~ri 57 (2280)
.+|++|||||.+|+.+|.+|++ .|. +|+|||+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~-~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDV-SVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTC-CEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCC-cEEEEecCCcc
Confidence 4799999999999999999998 687 69999997655
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.34 Score=62.93 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|+.
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~ 217 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGL-DTTVMMRS 217 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-ceEEEEcC
Confidence 3579999999999999999999998 69999974
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.2 Score=65.15 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=34.4
Q ss_pred HhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcC
Q 037878 196 SKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISG 242 (2280)
Q Consensus 196 a~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~ 242 (2280)
.++.|++++++++|++|+.++++ +.++..+| +++.||.||+|+
T Consensus 236 l~~~GV~v~~~~~V~~i~~~~~~--~~v~l~dG--~~i~aD~Vv~a~ 278 (493)
T 1m6i_A 236 VRREGVKVMPNAIVQSVGVSSGK--LLIKLKDG--RKVETDHIVAAV 278 (493)
T ss_dssp HHTTTCEEECSCCEEEEEEETTE--EEEEETTS--CEEEESEEEECC
T ss_pred HHhcCCEEEeCCEEEEEEecCCe--EEEEECCC--CEEECCEEEECC
Confidence 34568899999999999876664 36667788 579999999984
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.19 Score=66.95 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 222 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGI-EVTLVEMANQV 222 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCcc
Confidence 4689999999999999999999998 69999987654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.36 Score=58.70 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=31.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||||.+|+-.|..|++.|. +|++++++++
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~-~V~~i~~~~~ 189 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVK-NVTIIEYMPK 189 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBS-EEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCC-cEEEEEcCCc
Confidence 4689999999999999999999997 6999998653
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.39 Score=58.30 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||+|.+|+-+|..|++.|. +|+++++++++
T Consensus 153 ~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~~~~~~ 189 (323)
T 3f8d_A 153 KNRVVAVIGGGDSALEGAEILSSYST-KVYLIHRRDTF 189 (323)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHSS-EEEEECSSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCC-eEEEEEeCCCC
Confidence 34789999999999999999999997 69999986543
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.42 Score=58.49 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=31.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~-~V~~v~~~~~ 186 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTAR-RITLIHRRPQ 186 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEcCCc
Confidence 5789999999999999999999997 6999998654
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.42 Score=62.49 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
.++|+|||||.+|+-.|..|++.|. +|+++|++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~ 242 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS 242 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecc
Confidence 3569999999999999999999998 69999973
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.75 Score=61.38 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
.++|+|||||.+|+-+|..|++.|. +|+|+|++
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~ 318 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGG-DVTVMVRS 318 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence 3579999999999999999999998 69999975
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.87 Score=55.42 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||+|.+|+-+|..|++.|. +|+++++.++
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~-~v~~~~~~~~ 188 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAK-EVSIIHRRDK 188 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBS-EEEEECSSSS
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCC-eEEEEEecCc
Confidence 4689999999999999999999997 6999998654
|
| >2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.059 Score=55.44 Aligned_cols=45 Identities=16% Similarity=0.021 Sum_probs=39.3
Q ss_pred EEEEeCEEEEcCCcccccccccCCCCChhhHhhhccCCCChhhHh
Q 037878 231 EVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVMDMDELEKE 275 (2280)
Q Consensus 231 ~~i~aD~VI~A~p~~v~~~i~f~p~~~~~~~~~l~~~~l~~~~k~ 275 (2280)
++++||+||+|+|+++++.|.|.|++|+.+...+..+.++...|.
T Consensus 4 ~~~~Ad~VIvTvP~~vL~~I~F~P~LP~~k~~Ai~~l~~g~~~Kv 48 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSLRFVKVTPPFSYKKRRAVIETHYDQATKV 48 (130)
T ss_dssp EEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEE
T ss_pred eEEEcCEEEEcCCHHHHhcCcCCCCCCHHHHHHHHhCCCcceeEE
Confidence 478999999999999999999999999999999887777665553
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.19 Score=61.03 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-+|..|++.|. +|+|+|+.+++
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 180 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFAD-KVTIVHRRDEL 180 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeccccc
Confidence 4689999999999999999999998 69999998765
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.31 Score=51.27 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.+.+|+|||+|-.|...|..|.+.|+ +|+++|++.
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~ 40 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR 40 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH
Confidence 35689999999999999999999999 699999964
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.19 Score=62.92 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=33.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.++|+|||||.+|+-+|..|++.|. +|+|+|+++++.
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~l 182 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIILEYPL 182 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCCccc
Confidence 3689999999999999999999998 699999988764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.18 E-value=0.32 Score=50.91 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.++|+|||+|..|...|..|.+.|+ +|+++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 4689999999999999999999998 699999853
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.67 Score=62.90 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCCCCeEEEEC--ccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 18 LPVNTRIGIVG--GGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 18 ~~~~~dV~IIG--aGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
....++|+||| ||.+|+-+|..|++.|. +|+++|+.+++.
T Consensus 520 ~~~g~~VvViG~ggG~~g~e~A~~L~~~g~-~Vtlv~~~~~l~ 561 (690)
T 3k30_A 520 LPDGKKVVVYDDDHYYLGGVVAELLAQKGY-EVSIVTPGAQVS 561 (690)
T ss_dssp CCSSSEEEEEECSCSSHHHHHHHHHHHTTC-EEEEEESSSSTT
T ss_pred CCCCCEEEEEcCCCCccHHHHHHHHHhCCC-eeEEEecccccc
Confidence 34456899999 99999999999999998 699999876653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=0.36 Score=51.84 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.++|+|||+|..|...|..|++.|+ +|++++++.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 4689999999999999999999998 699999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2280 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 7e-75 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 4e-66 | |
| d1u5ua_ | 366 | e.5.1.2 (A:) Allene oxide synthase-lipoxygenase pr | 2e-65 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 3e-53 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-49 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-44 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-39 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 7e-36 | |
| d1dgfa_ | 497 | e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [Tax | 1e-34 | |
| d1e93a_ | 476 | e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: | 3e-33 | |
| d1p80a2 | 571 | e.5.1.1 (A:27-597) Catalase II {Escherichia coli, | 5e-33 | |
| d1gwea_ | 498 | e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus | 1e-32 | |
| d1m7sa_ | 484 | e.5.1.1 (A:) Catalase I {Pseudomonas syringae [Tax | 4e-31 | |
| d1si8a_ | 474 | e.5.1.1 (A:) Catalase I {Enterococcus faecalis [Ta | 1e-30 | |
| d1qwla_ | 491 | e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxI | 6e-30 | |
| d1a4ea_ | 488 | e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomy | 9e-30 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 1e-14 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 7e-12 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 3e-11 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 8e-11 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 8e-11 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 2e-10 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 5e-09 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 2e-08 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 3e-08 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 3e-08 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 6e-08 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 8e-08 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 1e-07 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 2e-07 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 3e-07 | |
| d1pj5a2 | 305 | c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox | 3e-07 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 5e-07 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 2e-06 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 5e-06 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 8e-06 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 1e-05 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 1e-05 | |
| d1vkua_ | 85 | a.28.1.1 (A:) Acyl carrier protein {Thermotoga mar | 1e-05 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 1e-05 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 1e-05 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 1e-05 | |
| d1nq4a_ | 95 | a.28.1.1 (A:) Oxytetracycline polyketide synthase | 1e-05 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 2e-05 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 2e-05 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 3e-05 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 3e-05 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 3e-05 | |
| d1klpa_ | 115 | a.28.1.1 (A:) Acyl carrier protein {Mycobacterium | 4e-05 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 4e-05 | |
| d1kifa1 | 246 | c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N | 4e-05 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 5e-05 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 6e-05 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 8e-05 | |
| d2gmha1 | 380 | c.3.1.2 (A:4-236,A:336-482) Electron transfer flav | 8e-05 | |
| d2af8a_ | 86 | a.28.1.1 (A:) Actinorhodin polyketide synthase acy | 1e-04 | |
| d1f80d_ | 74 | a.28.1.1 (D:) Acyl carrier protein {Bacillus subti | 1e-04 | |
| d1dv5a_ | 80 | a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactob | 3e-04 | |
| d2gdwa1 | 76 | a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), | 4e-04 | |
| d1t8ka_ | 77 | a.28.1.1 (A:) Acyl carrier protein {Escherichia co | 5e-04 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 6e-04 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 7e-04 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 8e-04 | |
| d2cula1 | 230 | c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T | 0.001 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 0.002 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 0.002 | |
| d1chua2 | 305 | c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E | 0.002 | |
| d1pn0a1 | 360 | c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So | 0.003 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 0.003 | |
| d1jnra2 | 356 | c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct | 0.003 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 0.004 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 261 bits (669), Expect = 7e-75
Identities = 96/585 (16%), Positives = 187/585 (31%), Gaps = 77/585 (13%)
Query: 487 KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546
+T W ++ +Y EL + R A+ L IK GD V + + A
Sbjct: 88 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTL---LDLGIKKGDVVAIYMPMVPEAAVA 144
Query: 547 FFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSW--- 603
C R + + + + + +++ A R
Sbjct: 145 MLACARIGAVHSVIFGGFSPEA-------VAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197
Query: 604 -----------------------PNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFL 640
++ W A +D F+
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 257
Query: 641 QFTSGSTGDAKGVMITHGGLIHNV-KLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699
+TSGSTG KGV+ T GG + + + + G L+ +
Sbjct: 258 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPL 317
Query: 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLS 759
G+T ++F + P + + K++ A ++ + + + D S
Sbjct: 318 ACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEG---TDRS 374
Query: 760 SMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILD 819
S++ L EP+ + + + G + + + E F+ +
Sbjct: 375 SLRILGSVGEPINPEAWEWYWKK---IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAG 431
Query: 820 WQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI--GYWGREELSQ 877
R V +V+ E E EG + I+ G +G E +
Sbjct: 432 SATRPF--------FGVQPALVDNEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFE 481
Query: 878 ITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESST 936
T+ + + +GD R DG ++ITGR+ D++ V+G + +A++E +
Sbjct: 482 QTYF-----STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV--- 533
Query: 937 EHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVE 996
H + AV+G+P + + G+ ++ ++ V +
Sbjct: 534 AHPKIAEAAVVGIP------------HAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRK 581
Query: 997 EHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTVPEP 1041
E G L ++ KT SGKI R L++ G + + +
Sbjct: 582 EIGPLATPDVLHWTDSLPKTRSGKIMRRI-LRKIAAGDTSNLGDT 625
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 235 bits (600), Expect = 4e-66
Identities = 105/584 (17%), Positives = 198/584 (33%), Gaps = 65/584 (11%)
Query: 487 KTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDA 546
K + +E TY+EL ++A L S ++ GD V + + +
Sbjct: 75 KKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMG--VRKGDTVAVYMPMVPEAIIT 132
Query: 547 FFGCMRAKVLPVPVLPPDPLQR------------------GGQALLKIENISKSCGAVAI 588
R + V + IE A+
Sbjct: 133 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRE 192
Query: 589 LSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTG 648
+ + R + P++ + ++ + T +D FL +TSGSTG
Sbjct: 193 TPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTG 252
Query: 649 DAKGVMITHGGLIHNVKL-MRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAIL 707
KGV + G + L MR + + + V + G ++ ++ G ++
Sbjct: 253 APKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 312
Query: 708 FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVA 767
F N + + + +++ T A L+ R +S + L S++ L
Sbjct: 313 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIEN---HSLKSLRCLGSV 369
Query: 768 AEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE-NCVFVSCAYGQGKPIILDWQGRVCC 826
EP+ + + E G ++ + Y E V+ G P+
Sbjct: 370 GEPIAAEVWEWYSEK---IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF- 425
Query: 827 GYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI--SSPSAGIGYWGREELSQITFRNEL 884
+D +++P T EE+ EG + + + PS W + T+
Sbjct: 426 -------FGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYL--- 475
Query: 885 QNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC 943
N Y TGD DG +I GR+ D++ V+G + +A++E +
Sbjct: 476 --NPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAE--- 530
Query: 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVA 1003
CAV+G +++ G VV+ D +++IK +V +
Sbjct: 531 CAVVGFNDDLT---------GQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIG 581
Query: 1004 SVKLIKPR------TMSKTTSGKIKRFECLKQFVDGTLNTVPEP 1041
P+ + KT SGKI R L++ + G + + +
Sbjct: 582 PFAA--PKLIILVDDLPKTRSGKIMRRI-LRKILAGESDQLGDV 622
|
| >d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein, N-terminal domain {Black sea rod (Plexaura homomalla) [TaxId: 47982]} Length = 366 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Allene oxide synthase domain: Allene oxide synthase-lipoxygenase protein, N-terminal domain species: Black sea rod (Plexaura homomalla) [TaxId: 47982]
Score = 224 bits (573), Expect = 2e-65
Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 10/313 (3%)
Query: 1707 ATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDAR 1766
TTLK R H +G G G++TI ++ + P+H+ F G+ +P +RH+N DDA
Sbjct: 54 GTTLKGFRRATHTVGTGGIGEITIVNDPK-FPEHEFFTAGRTFPARLRHANL-KYPDDAG 111
Query: 1767 IDARGAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWL-VCGLAAREEHVKRVP 1825
DAR +I+ + ++ LD+ + TG A ++ V A EE+V + P
Sbjct: 112 ADARSFSIKFA---DSDSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAAEEYVYKNP 168
Query: 1826 HIRDAVWKSLR-LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEP 1884
+ + ++LR D++A ++YYS + F+ DG+ Y +++ P D I E+
Sbjct: 169 YYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRL 228
Query: 1885 RGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIAL 1944
+ R +N+ RP +L E+ R+ V Y Q+QI D+ I
Sbjct: 229 TEEEQRKIWIFSRHENEKRPDDYLRKEYVERLQKGP-VNYRLQIQIHEASPDDTA-TI-F 285
Query: 1945 DCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDH 2004
WD+ +P+ D+ ++SI LS + EK FN + + ++ A + SI
Sbjct: 286 HAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGE 345
Query: 2005 GRSLIYEICQHLR 2017
R +Y QHLR
Sbjct: 346 LRVAVYTWVQHLR 358
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 195 bits (495), Expect = 3e-53
Identities = 99/536 (18%), Positives = 192/536 (35%), Gaps = 55/536 (10%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY E+ A R+ L R + GDRV + ++A+F + P
Sbjct: 42 TYAEVYQRARRLMGGL---RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPR 98
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
+ + I N ++ + + + A+R ++ D
Sbjct: 99 LSPKE----IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 154
Query: 624 ENVVCFTES---QPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL--MRKRYKSTSKTV 678
E + + C + +T+G+TG KGV+ +H L+ + + + K V
Sbjct: 155 EALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV 214
Query: 679 LVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFA 738
++ +P +H +VG +P +E T +AG
Sbjct: 215 VLPVVPMFHVNAWCLPYAATLVGAKQV----LPGPRLDPASLVELFDGEGVTFTAGVPTV 270
Query: 739 FELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYG 798
+ + LES+ L +++ L+V ++ + RF + + GYG
Sbjct: 271 WLALADYLESTG-----HRLKTLRRLVVGGSAAPRSLIARFERMGVE-------VRQGYG 318
Query: 799 LAENCVFVSCAYGQGKPIILDWQGRVCC-GYVDQNDPDVDIRIVNPETSEEIGEPGKEGE 857
L E V + + L + ++ P V +R+ + E + GE
Sbjct: 319 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGE 378
Query: 858 VWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLI 916
V + P GY+G EE ++ + + RTGD+ +G I R+KDLI
Sbjct: 379 VQLKGPWITGGYYGNEEATRSALTPD-------GFFRTGDIAVWDEEGYVEIKDRLKDLI 431
Query: 917 IVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEV 976
G + S D+E + ++ AV+ +P ++ VV+
Sbjct: 432 KSGGEWISSVDLENALMGH-PKVKE--AAVVAIPHP----------KWQERPLAVVVP-- 476
Query: 977 RDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032
R KP +++ E++ + + A V + +T++GK + +Q+ +
Sbjct: 477 RGEKPTPEELNEHLLKAGFAKWQLPDAYVFA---EEIPRTSAGKFLKRALREQYKN 529
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 184 bits (467), Expect = 1e-49
Identities = 89/555 (16%), Positives = 184/555 (33%), Gaps = 89/555 (16%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY E + R+A + ++ + R+++ L F G + V P
Sbjct: 49 TYAEYFEMSVRLAEAM---KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR-----------------VGSWPNL 606
+ + N + + + +
Sbjct: 106 YNERE-------LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 158
Query: 607 PWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL 666
++T + V + + + + +SGSTG KGV + H
Sbjct: 159 QSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 218
Query: 667 MRKRYKS---TSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLET 723
R T ++S +P +H G+ L + G ++ + L+L +
Sbjct: 219 ARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-----YRFEEELFLRS 273
Query: 724 MSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELT 783
+ Y+ + F + + +DLS++ + P+ + + +
Sbjct: 274 LQDYKIQSALLVPTLFSFFAKSTL-----IDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 328
Query: 784 RPFGLSQGVMAPGYGLAENCVFVSCAY-GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVN 842
G+ Q GYGL E + G KP G+V P + ++V+
Sbjct: 329 HLPGIRQ-----GYGLTETTSAILITPEGDDKP---GAVGKVV--------PFFEAKVVD 372
Query: 843 PETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII 902
+T + +G + GE+ + P GY E + + + +GD+
Sbjct: 373 LDTGKTLG-VNQRGELCVRGPMIMSGYVNNPEATNALIDKD-------GWLHSGDIAYWD 424
Query: 903 DGK-FFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGI 959
+ + FFI R+K LI G V A++E + P V G+P++
Sbjct: 425 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH-----PNIFDAGVAGLPDD------- 472
Query: 960 SVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTS 1018
D + VV+ + GK + K++++ + ++V + V + + K +
Sbjct: 473 ---DAGELPAAVVV--LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV---DEVPKGLT 524
Query: 1019 GKIKRFECLKQFVDG 1033
GK+ + + +
Sbjct: 525 GKLDARKIREILIKA 539
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 168 bits (426), Expect = 2e-44
Identities = 94/523 (17%), Positives = 180/523 (34%), Gaps = 67/523 (12%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
TY EL+ A+++A + I V ++ +D ++A VP+
Sbjct: 50 TYHELNVKANQLARIF---IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIE 106
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
P +R I+ I A +L+ + + + + +K +
Sbjct: 107 YPKER-------IQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIK-----IR 154
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWL 683
E S+ DL ++ +TSG+TG+ KG M+ H G+ + T K + +
Sbjct: 155 EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFA 214
Query: 684 PQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMV 743
D + + G S I+ I + + + + +++ T P +
Sbjct: 215 SISFDASVWEMFMALLTGASLYIILKD--TINDFVKFEQYINQKEITVITLPPTYVVHL- 271
Query: 744 RRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENC 803
+ S++ L+ A + V ++ E YG E
Sbjct: 272 ----------DPERILSIQTLITAGSATSPSLVNKWKEKVT--------YINAYGPTETT 313
Query: 804 VFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSP 863
+ + + I V G P + +I + + ++ G+ GE+ I
Sbjct: 314 ICATTWVATKETI----GHSVPIGA-----PIQNTQIYIVDENLQLKSVGEAGELCIGGE 364
Query: 864 SAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRN 922
GYW R EL+ F + G K +TGD R + DG GRI + + + G
Sbjct: 365 GLARGYWKRPELTSQKFVDNPFVP-GEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHR 423
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
V +VE + +H+ AV + Q + A K +
Sbjct: 424 VELEEVESILL---KHMYISETAVSVHKDH--------------QEQPYLCAYFVSEKHI 466
Query: 983 DKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFE 1025
+ + + + + + ++L M T++GKI R +
Sbjct: 467 PLEQLRQFSSEELPTYMIPSYFIQL---DKMPLTSNGKIDRKQ 506
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 153 bits (387), Expect = 2e-39
Identities = 105/540 (19%), Positives = 192/540 (35%), Gaps = 71/540 (13%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
+Y ELD A R+A +K I+ DRV++ +F + F R LPV LP
Sbjct: 52 SYRELDTRADRLAAGF---QKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPS 108
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSW----PNLPWLHTDSWVKNSK 619
I + A A + Y LP L ++
Sbjct: 109 HRSSE-------ITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE 161
Query: 620 NLLAENVVCFT-----ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST 674
L + E + D+ FLQ + GSTG +K + TH I+++K +
Sbjct: 162 EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD 221
Query: 675 SKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG 734
TV ++ LP H+ L ++ ++ SP +P + + + T +A
Sbjct: 222 HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP---SPSPDDAFPLIEREKVTITAL 278
Query: 735 PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA 794
+ + S +D + SS++ L V +R + +
Sbjct: 279 VPPLAMVWMDAASSRRDDL-----SSLQVLQVGGAKFSAEAARRVKAVFGC------TLQ 327
Query: 795 PGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
+G+AE V + II++ QG+ Y + R+ + + +PG+
Sbjct: 328 QVFGMAEGLVNYTRLDDPE-EIIVNTQGKPMSPY-------DESRVWDDHDRDV--KPGE 377
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKD 914
G + P GY+ EE + +F + G T DG + GR KD
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR------DGYIVVEGRAKD 431
Query: 915 LIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEEVLSTKGISVSDGSDQVGLVV 972
I G V + +VE + + P A++ +P++ L + V
Sbjct: 432 QINRGGEKVAAEEVENHLLAH-----PAVHDAAMVSMPDQFLGER------------SCV 474
Query: 973 IAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032
RD P ++ ++ R + + + V+ ++ + +T GK+ + + +
Sbjct: 475 FIIPRDEAPKAAELKAFLRERGLAAYKI-PDRVEFVE--SFPQTGVGKVSKKALREAISE 531
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 142 bits (358), Expect = 7e-36
Identities = 85/532 (15%), Positives = 177/532 (33%), Gaps = 65/532 (12%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKVLPVPVLPP 563
T+ EL A +A +L ++P RV +V D V A R +P + P
Sbjct: 31 THAELRARVEAVAARL---HADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR 87
Query: 564 DPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRV-GSWPNLPWLHTDSWVKNSKNLL 622
+ + K A + +G A + S + V++ +
Sbjct: 88 LKSAE-------LAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYS 140
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST--SKTVLV 680
+ + +P F+ +TSG+TG K +I V M + V++
Sbjct: 141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 681 SWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE 740
+P YH +G L A+ T ++ P+ L+ + + + T +
Sbjct: 201 GLMPLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLD 256
Query: 741 LMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLA 800
+ S L S++ + A + ++ + YG
Sbjct: 257 ALAAAAA---HAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG------EKVNIYGTT 307
Query: 801 ENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860
E + + + +V I + E + + +
Sbjct: 308 EAMNSLYMRQPKTGTEMAPGFF-----------SEVRIVRIGGGVDEIVANGEEGELIVA 356
Query: 861 SSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVA 919
+S SA +GY + + + ++ + RT D+ +G I GR+ D+II
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQD--------GWYRTSDVAVWTPEGTVRILGRVDDMIISG 408
Query: 920 GRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDG 979
G N++ +++E+ + ++ VIG+ ++ V V+ R G
Sbjct: 409 GENIHPSEIERVLGTAPGVTE---VVVIGLADQ----------RWGQSVTACVVP--RLG 453
Query: 980 KPVDKDVIEN-IKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQF 1030
+ + D ++ ++ + + L + K K+ R + ++Q
Sbjct: 454 ETLSADALDTFCRSSELADFKRPKRYFIL---DQLPKNALNKVLRRQLVQQV 502
|
| >d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 138 bits (349), Expect = 1e-34
Identities = 65/321 (20%), Positives = 117/321 (36%), Gaps = 47/321 (14%)
Query: 1718 HRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN---SLSADDDARIDARGAA 1773
H G G + +I K+F H GK P+ VR S + D R D RG A
Sbjct: 71 HAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVR-DPRGFA 129
Query: 1774 IRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRD---- 1829
++ +++ +GN DL F+ R F +++ + H+K + D
Sbjct: 130 VKFYTE-DGNW----DLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSL 184
Query: 1830 ---------AVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSG 1880
++ + D + M+ Y + +G+ +Y KF + D G
Sbjct: 185 RPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKT-------DQG 237
Query: 1881 EVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQ 1940
+ + + + ++D D + + +++ + F +Q+ Q E
Sbjct: 238 ---IKNLSVEDAARLSQEDPD-----YGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFP 289
Query: 1941 DIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQ 1998
D TK W +YP I VG++ +++N E E++ F+P I+ P
Sbjct: 290 FNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKML-- 347
Query: 1999 SASIDHGRSLIYEICQHLRNG 2019
GR Y R G
Sbjct: 348 -----QGRLFAYPDTHRHRLG 363
|
| >d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]} Length = 476 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Proteus mirabilis [TaxId: 584]
Score = 133 bits (337), Expect = 3e-33
Identities = 66/323 (20%), Positives = 105/323 (32%), Gaps = 45/323 (13%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSNSLSA--DDDARIDARG 1771
R H G G T+ +I KIF GK + R S DA D RG
Sbjct: 48 RRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRG 107
Query: 1772 AAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRD-- 1829
A++ +++ GN D+ FY R F +++ + + D
Sbjct: 108 FALKFYTE-EGNW----DMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFF 162
Query: 1830 -----------AVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGED 1878
L SY +H + + F D + +VKF R
Sbjct: 163 SHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRC-------- 214
Query: 1879 SGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEA 1938
+ + ++ E A+ D + + + R+ Q+QI P +
Sbjct: 215 --QQGIKNLMDDEAEALVGKDRE-----SSQRDLFEAIKRGDYPRWKLQIQIMPEKEAST 267
Query: 1939 MQDIALDCTKPWDEAEYPYIDVGEISIDQNL--STEESEKLEFNPYLKCNEIDVIPATTS 1996
+ D TK W A+YP +DVG +++N + E+ F+P I P
Sbjct: 268 VPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKML 327
Query: 1997 SQSASIDHGRSLIYEICQHLRNG 2019
GR Y R G
Sbjct: 328 -------QGRLFSYGDAHRYRLG 343
|
| >d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII [TaxId: 562]} Length = 571 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase II species: Escherichia coli, HPII [TaxId: 562]
Score = 134 bits (339), Expect = 5e-33
Identities = 61/330 (18%), Positives = 99/330 (30%), Gaps = 51/330 (15%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN---SLSADDDARIDAR 1770
R H G + G Y ++ + P K PV VR S + D R R
Sbjct: 99 RIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVR-QIR 157
Query: 1771 GAAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRDA 1830
G A + +++ G DL F+ + F ++ + + D
Sbjct: 158 GFATKFYTE-EGIF----DLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDT 212
Query: 1831 VWKSLRLS-----------------DSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDE 1873
W + L SY M + +G+ +V+F +P
Sbjct: 213 FWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAG 272
Query: 1874 SIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933
++ E + D D F E + + Y Q+ P
Sbjct: 273 ----------KASLVWDEAQKLTGRDPD-----FHRRELWEAIEAGDFPEYELGFQLIPE 317
Query: 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNL--STEESEKLEFNPYLKCNEIDVI 1991
+ LD TK E P VG++ +++N E+E+ F+P +D
Sbjct: 318 EDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFT 377
Query: 1992 PATTSSQSASIDHGRSLIYEICQHLRNGEP 2021
GR Y Q R G P
Sbjct: 378 NDPLL-------QGRLFSYTDTQISRLGGP 400
|
| >d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId: 1270]} Length = 498 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Micrococcus lysodeikticus [TaxId: 1270]
Score = 132 bits (333), Expect = 1e-32
Identities = 58/322 (18%), Positives = 109/322 (33%), Gaps = 44/322 (13%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNS--LSADDDARIDARGA 1772
R H G G+ + +++ +F PG ++R S D D RG
Sbjct: 53 RRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGF 112
Query: 1773 AIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRD--- 1829
A+R +++ GN DL F+ R F ++ + ++ D
Sbjct: 113 ALRFYTE-EGNY----DLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWT 167
Query: 1830 ----------AVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDS 1879
+ L ++ EM+ Y + L+ G++ +VK+
Sbjct: 168 NNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFIS-------QQ 220
Query: 1880 GEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAM 1939
G + E I ++ D F + ++ ++ +Q P + +
Sbjct: 221 G---VHNLSNDEATKIAGENAD-----FHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTY 272
Query: 1940 QDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSS 1997
+ D TK + +YP I VG +++++N + E F+P I + P
Sbjct: 273 RFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRML- 331
Query: 1998 QSASIDHGRSLIYEICQHLRNG 2019
GR+ Y Q R G
Sbjct: 332 ------LGRAFAYHDAQLYRVG 347
|
| >d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]} Length = 484 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Pseudomonas syringae [TaxId: 317]
Score = 127 bits (321), Expect = 4e-31
Identities = 56/323 (17%), Positives = 101/323 (31%), Gaps = 48/323 (14%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSN---SLSADDDARIDARG 1771
R H G +G+ T +I L +F G+ PV VR S+ + + R D G
Sbjct: 49 RVVHARGTGVKGEFTASADISDLSKATVFKSGEKTPVFVRFSSVVHGNHSPETLR-DPHG 107
Query: 1772 AAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK--------- 1822
A + ++ +GN DL F+ R F + ++
Sbjct: 108 FATKFYTA-DGNW----DLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFDFF 162
Query: 1823 ----RVPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGED 1878
++ + Y M G+ YVKF +
Sbjct: 163 SHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKLVNAKGEVHYVKFHWKS-------L 215
Query: 1879 SGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEA 1938
G + + P E + D L ++ + ++ +Q+ +
Sbjct: 216 QG---IKNLDPKEVAQVQSKDYS-----HLTNDLVGAIKKGDFPKWDLYVQVLKPEELAK 267
Query: 1939 MQDIALDCTKPWDEAEYPYIDVGEISIDQNL--STEESEKLEFNPYLKCNEIDVIPATTS 1996
LD TK W + P +G++ +++N+ +E+E++ P I+
Sbjct: 268 FDFDPLDATKIWP--DVPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSEDRLL 325
Query: 1997 SQSASIDHGRSLIYEICQHLRNG 2019
GR Y Q R G
Sbjct: 326 -------QGRVFSYADTQMYRLG 341
|
| >d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId: 1351]} Length = 474 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Enterococcus faecalis [TaxId: 1351]
Score = 125 bits (316), Expect = 1e-30
Identities = 60/323 (18%), Positives = 105/323 (32%), Gaps = 45/323 (13%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLS--ADDDARIDARG 1771
R H G G + ++ GK P+ R S D D RG
Sbjct: 48 RVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRG 107
Query: 1772 AAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK--------- 1822
A++ ++D GN DL F+ R F ++ H+K
Sbjct: 108 FALKFYTD-EGNY----DLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFW 162
Query: 1823 ----RVPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGED 1878
H + + S+ MH + + + G+ +VK+ + +
Sbjct: 163 SHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKT-------N 215
Query: 1879 SGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEA 1938
G + + I + D F ++ + + + +QI P
Sbjct: 216 QG---IKNLESQLAEEIAGKNPD-----FHIEDLHNAIENQEFPSWTLSVQIIPYADALT 267
Query: 1939 MQDIALDCTKPWDEAEYPYIDVGEISIDQNL--STEESEKLEFNPYLKCNEIDVIPATTS 1996
M++ D TK + EYP I+VG +++++N E E++ F+P I+ P
Sbjct: 268 MKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLL 327
Query: 1997 SQSASIDHGRSLIYEICQHLRNG 2019
GR Y R G
Sbjct: 328 -------QGRLFAYGDAHRHRVG 343
|
| >d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]} Length = 491 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Helicobacter pylori [TaxId: 210]
Score = 124 bits (312), Expect = 6e-30
Identities = 59/327 (18%), Positives = 100/327 (30%), Gaps = 48/327 (14%)
Query: 1718 HRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSNSLSA--DDDARIDARGAAI 1774
H G G T+ +I KIF GK R S DA D RG A+
Sbjct: 56 HAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAM 115
Query: 1775 RIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK------------ 1822
+ +++ GN DL F+ R F ++ + ++
Sbjct: 116 KYYTE-EGNW----DLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNV 170
Query: 1823 -RVPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGE 1881
+ V + S+ M + + G+ +VKF
Sbjct: 171 PESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQG-------- 222
Query: 1882 VEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQD 1941
+ + E I + D D + ++ ++ +Q+ P + +
Sbjct: 223 --VKHLTNEEAAEIRKHDPD-----SNQRDLFDAIARGDYPKWKLSIQVMPEEDAKKYRF 275
Query: 1942 IALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQS 1999
D TK W +YP ++VG + +++N E E+ F P I P
Sbjct: 276 HPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRML--- 332
Query: 2000 ASIDHGRSLIYEICQHLR---NGEPLP 2023
GR Y R N +P
Sbjct: 333 ----QGRLFSYGDTHRYRLGVNYPQIP 355
|
| >d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 488 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 123 bits (310), Expect = 9e-30
Identities = 51/325 (15%), Positives = 97/325 (29%), Gaps = 47/325 (14%)
Query: 1715 RYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSNSLS--ADDDARIDARG 1771
R H G G + D+I + +F GK + R S D D RG
Sbjct: 53 RNPHAHGSGAFGYFEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTVRDPRG 112
Query: 1772 AAIRIFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIRD-- 1829
A + +++ GN D F+ R F ++ + +++ D
Sbjct: 113 FATKFYTE-EGNL----DWVYNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDADMFWDFL 167
Query: 1830 -------------AVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIG 1876
++ +Y MH YS + +G YV+ ++
Sbjct: 168 TTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIKTDQG--- 224
Query: 1877 EDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQD 1936
+ + E I + D + + + + + + +Q
Sbjct: 225 -------IKNLTIEEATKIAGSNPD-----YCQQDLFEAIQNGNYPSWTVYIQTMTERDA 272
Query: 1937 EAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPAT 1994
+ + D TK W + ++P VG+I +++N + E+ F P +
Sbjct: 273 KKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPSTTVPYQEASADP 332
Query: 1995 TSSQSASIDHGRSLIYEICQHLRNG 2019
R Y R G
Sbjct: 333 VL-------QARLFSYADAHRYRLG 350
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 75.9 bits (185), Expect = 1e-14
Identities = 42/265 (15%), Positives = 82/265 (30%), Gaps = 42/265 (15%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE----------------- 65
+ IVG G +GLS AY LA G++ VT+LE GG +
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQ-VTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE 90
Query: 66 --------IEEAGAELEEMDSHKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKES 117
I + L E + + ++ ++ + K +
Sbjct: 91 KHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSA 150
Query: 118 GRIGVHAVSDLASDLTPT----------------YLEDRGFKSVPKSVAYGYTASGYGFV 161
G++ ++ + +L T YL G S G +
Sbjct: 151 GQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGY 210
Query: 162 QDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGV 221
+ + + G L + + + +VH N++V+ I+++ V V
Sbjct: 211 YVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTV 270
Query: 222 DVKHSNGECEVMEFDKIIISGAFPV 246
+ + E + D +I+
Sbjct: 271 VYETLSKETPSVTADYVIVCTTSRA 295
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 66.9 bits (161), Expect = 7e-12
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAEL 73
R+ +VG G SG+S A L++ G ++ +LE +GG EL
Sbjct: 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL 52
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (157), Expect = 3e-11
Identities = 40/267 (14%), Positives = 74/267 (27%), Gaps = 49/267 (18%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE-----EAGAE------ 72
+ +VGGG SG++ A L G V +LE VGG ++ + + G
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGLN-VVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQ 60
Query: 73 ---LEEMDSHKLALI-------------------DGSTGEFQDIKVADDYVSVISLTLEL 110
L L G + D+ + ++
Sbjct: 61 NRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM 120
Query: 111 QDKAKESGRIGVHAVSDLASDLTPTYLEDRGFKSVPKSVAYGYTASGYGFVQDMPYA--- 167
+ + + L+ + K +A + A
Sbjct: 121 GREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWF 180
Query: 168 --------YIHEFTRTSMAGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTV 219
T+ G+ R+F GG + +++ L V V+ I + V
Sbjct: 181 LWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENV 240
Query: 220 GVDVKHSNGECEVMEFDKIIISGAFPV 246
V+ N E E +I + +
Sbjct: 241 L--VETLNHEM--YEAKYVISAIPPTL 263
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 63.3 bits (153), Expect = 8e-11
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSH 79
+ +I IVG G SG LA+ G+ V ++++ +GG E + H
Sbjct: 2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDSETNVMVHVYGPH 59
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 64.1 bits (154), Expect = 8e-11
Identities = 34/196 (17%), Positives = 56/196 (28%), Gaps = 5/196 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE----EAGAELEEMDS 78
R+ ++G G SGL+ AY L G VT+ E GG SV + + GA
Sbjct: 3 RVAVIGAGVSGLAAAYKLKIHGLN-VTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESE 61
Query: 79 HKLALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLE 138
+ + S G + + + + + LE
Sbjct: 62 GDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLE 121
Query: 139 DRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQKLSKY 198
+K+ S S GF Q + ++ S+ +
Sbjct: 122 PILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPEL 181
Query: 199 LPTEVHCNSEVLAIRR 214
E S +L R
Sbjct: 182 WNLEKRFGSVILGAIR 197
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 62.5 bits (150), Expect = 2e-10
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67
+ +VGGG SGL+ A+ L G LLE +GG + +
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTD-AVLLESSARLGGAVGTHALA 45
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (140), Expect = 5e-09
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAEL 73
++ I+G G SGL+ A L G VTLLE VGG + A+L
Sbjct: 5 TGKVIIIGSGVSGLAAARQLQSFGMD-VTLLEARDRVGGRVATFRKGNYVADL 56
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 2e-08
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68
++G G + + ++ G + V +++ GG S+ E
Sbjct: 11 VLGTGLTECILSGIMSVNGKK-VLHMDRNPYYGGESSSITPLE 52
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 3e-08
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHK 80
++G G + + L+ G + V ++K GG SV + + + ++ K
Sbjct: 10 VLGTGITECILSGLLSVDGKK-VLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 55.2 bits (132), Expect = 3e-08
Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 15/230 (6%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVE-----IEEAGAELEEMDSHK 80
IVG G G A L KL V ++EK + +GG + + I + GA + +
Sbjct: 6 IVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKY 64
Query: 81 LALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRIGVHAVSDLASDLTPTYLEDR 140
+ EF L ++ A ++ +
Sbjct: 65 IWDYVNDLVEFNRFTN-SPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKY 123
Query: 141 GFKSVPKSVAYGYTASGYGFVQDMPYAYIH-------EFTRTSMAGKIRRFKGGYTSLWQ 193
G K + G Q + Y + + +I + +
Sbjct: 124 GDKVPENLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFS 183
Query: 194 KLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGA 243
+ +P + + +G+D + +II +G
Sbjct: 184 DRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLKDKDSLAS-KAHRIIYTGP 232
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 54.1 bits (129), Expect = 6e-08
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHK 80
T + +VG G +GLS AY ++K V ++E+ + GG + + +
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLF 92
Query: 81 LALIDGSTGEFQDIKVADDYVSVISLTLELQDKAKESG 118
L I + E V + + + +
Sbjct: 93 LDEIGVAYDEQDTYVVVKH--AALFTSTIMSKLLARPN 128
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.4 bits (127), Expect = 8e-08
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVGGM 60
+I +VG GP+G TA L K R +V + EK G+
Sbjct: 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL 41
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 52.8 bits (125), Expect = 1e-07
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYR------NVTLLEKYHTVGGM 60
I IVG GPS A +L K V +LE T G+
Sbjct: 4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL 47
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 52.4 bits (124), Expect = 2e-07
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
P RI +VGG SGL+ A L G V + E+
Sbjct: 2 PTTDRIAVVGGSISGLTAALMLRDAGVD-VDVYERSPQPLS 41
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCE 62
+ +I ++G GP+ +S A LA+LGY ++T+ EK VGG+
Sbjct: 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST 45
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Score = 52.1 bits (123), Expect = 3e-07
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
RI I+G G G + A L G+ N+T+L++
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQ 33
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.7 bits (122), Expect = 5e-07
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58
I I G G GLS A AL + G VTLLE +
Sbjct: 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 38
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 49.7 bits (117), Expect = 2e-06
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++GGGPSGL A A+ G V LL+K + +G
Sbjct: 7 VIGGGPSGLMAAIGAAEEGAN-VLLLDKGNKLGRKL 41
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.4 bits (114), Expect = 5e-06
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
T++ I+G GPSGL L K G +LE+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGID-NVILER 33
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 48.1 bits (113), Expect = 8e-06
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 18 LPVNTRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKYHTVGG 59
LP +I I+G GPSGL TA AL VTL E+ + GG
Sbjct: 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 43
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 47.7 bits (112), Expect = 1e-05
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG------MCESVEIEEAGAELEEMDSH 79
I+G G +GL+ A + G + V LLEK GG + + A+L D
Sbjct: 28 IIGSGGAGLAAAVSARDAGAK-VILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKK 86
Query: 80 KLALID 85
++ + D
Sbjct: 87 QIMIDD 92
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 47.4 bits (111), Expect = 1e-05
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ ++GGG G + AY LAK L E G
Sbjct: 4 HYEAVVIGGGIIGSAIAYYLAKENKN-TALFESGTMGGR 41
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Score = 43.5 bits (102), Expect = 1e-05
Identities = 15/78 (19%), Positives = 28/78 (35%)
Query: 1077 MSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVD 1136
M K ++ + SE+ G + V ++ G DSI V+ D + + +
Sbjct: 4 MERKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEE 63
Query: 1137 IFTATCIADLASFSENLV 1154
I + DL +
Sbjct: 64 ISKIRKVKDLIDIVIKKL 81
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 47.0 bits (110), Expect = 1e-05
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
R+ ++G G GLS+A LA+ GY V +L +
Sbjct: 6 QKRVVVLGSGVIGLSSALILARKGYS-VHILARDLPEDV 43
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 47.3 bits (111), Expect = 1e-05
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+VG G +G S A + G + V L+EK +GG
Sbjct: 21 VVGSGGAGFSAAISATDSGAK-VILIEKEPVIGG 53
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 46.8 bits (110), Expect = 1e-05
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
I+G G +GL A LAKLG VT+ + +G
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKS-VTVFDNGKKIGR 41
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Score = 43.5 bits (102), Expect = 1e-05
Identities = 14/85 (16%), Positives = 33/85 (38%)
Query: 1076 KMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAV 1135
++ D++ L+ E+ I + + + G DS+ ++ ++ GV +G
Sbjct: 3 LLTLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDD 62
Query: 1136 DIFTATCIADLASFSENLVMKSQPQ 1160
+ AT L + + + P
Sbjct: 63 AVEKATTPRALIEMTNASLTGASPS 87
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 46.6 bits (109), Expect = 2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+VG G G++ Y LAK G + L++ +
Sbjct: 8 VVGAGSMGMAAGYQLAKQGVK-TLLVDAFDPPHT 40
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 45.7 bits (107), Expect = 2e-05
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++GGGP G S A+A A G + V ++E+Y T+GG+C
Sbjct: 11 VLGGGPGGYSAAFAAADEGLK-VAIVERYKTLGGVC 45
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 46.4 bits (109), Expect = 3e-05
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
P + +VG G SGL Y L +LG R+V ++E VGG
Sbjct: 5 PEEVDVLVVGAGFSGLYALYRLRELG-RSVHVIETAGDVGG 44
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 46.1 bits (108), Expect = 3e-05
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+VG G +G + + A K G V L++K GG
Sbjct: 24 VVGAGSAGFNASLAAKKAGAN-VILVDKAPFSGG 56
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 45.2 bits (106), Expect = 3e-05
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
I+GGGP G A A+LG++ T +EK +GG C
Sbjct: 8 IIGGGPGGYVAAIKAAQLGFK-TTCIEKRGALGGTC 42
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} Length = 115 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.9 bits (100), Expect = 4e-05
Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 1077 MSNKDIVEFLKGLVSEQTGIPITKVSATDSLVS-YGIDSIGVVRAAQKLSDFLGVPVGAV 1135
++ ++I+ + ++ E TGI ++++ S V IDS+ +V A + D GV +
Sbjct: 3 VTQEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDE 62
Query: 1136 DIFTATCIADLASFSENLVMKSQPQ 1160
D+ + D+ ++ + L ++
Sbjct: 63 DLAGLRTVGDVVAYIQKLEEENPEA 87
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (107), Expect = 4e-05
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTVGGMCESVEIEEAGAELEEMDSH 79
+ + IVG G SGLS AY +AK V ++E GG + + +
Sbjct: 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHL 109
Query: 80 KL 81
L
Sbjct: 110 FL 111
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 44.9 bits (105), Expect = 4e-05
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58
R+ ++G G GLSTA + + + V
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHS-VLQPLDVKVYA 36
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (104), Expect = 5e-05
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
I+GGGP+G A A+LG+ +EK +GG C
Sbjct: 10 IIGGGPAGYVAAIKAAQLGFN-TACVEKRGKLGGTC 44
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (103), Expect = 6e-05
Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEMDSHK 80
++++ I+G GP+G + A A+ L+ G + + E+E + ++
Sbjct: 5 HSKLLILGSGPAGYTAAVYAARAN-LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63
Query: 81 LALIDGSTGEFQDIKVADDYVSVISLT 107
L + ++ D+++ + L
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQ 90
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.3 bits (103), Expect = 8e-05
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYR--NVTLLEKYHTVGGMC 61
TRI I+GGGP+G A A VT+++ +GG
Sbjct: 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAA 42
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Score = 44.8 bits (105), Expect = 8e-05
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 26 IVGGGPSGLSTAYALAKLGYR-----NVTLLEK-----YHTVGG 59
IVG GP+GLS A L +L + V L+EK HT+ G
Sbjct: 37 IVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG 80
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} Length = 86 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Score = 40.7 bits (95), Expect = 1e-04
Identities = 12/76 (15%), Positives = 24/76 (31%)
Query: 1074 SKKMSNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVG 1133
+ ++ D+ L E G ++ G DS+ ++ A +L GV +
Sbjct: 2 ATLLTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIP 61
Query: 1134 AVDIFTATCIADLASF 1149
+L
Sbjct: 62 DDVAGRVDTPRELLDL 77
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} Length = 74 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Score = 40.2 bits (94), Expect = 1e-04
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 1081 DIVEFLKGLVSEQTGIPITKVSATDSLVS-YGIDSIGVVRAAQKLSDFLGVPVGAVDIFT 1139
D +E + ++ ++ G+ V S G D + VV +L D + + D
Sbjct: 3 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEK 62
Query: 1140 ATCIADLASFSE 1151
+ D ++ +
Sbjct: 63 IATVGDAVNYIQ 74
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} Length = 80 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Score = 39.1 bits (91), Expect = 3e-04
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVD 1136
+++ I + ++++ TG K + +L + +DS+G V+ +L GV +
Sbjct: 1 ADEAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSE 60
Query: 1137 IFTATC--IADLASFSENL 1153
+ + E
Sbjct: 61 FDRKEWDTPNKIIAKVEQA 79
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Score = 38.7 bits (90), Expect = 4e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 1081 DIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTA 1140
+ L + G+ + D+ G S+ + A ++ V + +F
Sbjct: 7 AVESKLAEIWERVLGVS--GIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQ 64
Query: 1141 TCIADLASF 1149
I LA +
Sbjct: 65 PTIKALAQY 73
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Score = 38.6 bits (90), Expect = 5e-04
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 1081 DIVEFLKGLVSEQTGIPITKVSATDSLVS-YGIDSIGVVRAAQKLSDFLGVPVGAVDIFT 1139
I E +K ++ EQ G+ +V+ S V G DS+ V L + + +
Sbjct: 2 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEK 61
Query: 1140 ATCIADLASF 1149
T + +
Sbjct: 62 ITTVQAAIDY 71
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 6e-04
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++GGG GL++A A+LG R ++E H +GG C
Sbjct: 8 VIGGGSGGLASARRAAELGAR-AAVVES-HKLGGTC 41
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 41.7 bits (96), Expect = 7e-04
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
++GGG +GL A A + G +L
Sbjct: 10 VIGGGLAGLRAAVATQQKGLS-TIVLSLIPVKRS 42
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 41.2 bits (95), Expect = 8e-04
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++GGG G++ A A+ + V L+EK +GG C
Sbjct: 6 VIGGGSGGMAAARRAARHNAK-VALVEK-SRLGGTC 39
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Score = 40.4 bits (94), Expect = 0.001
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAELEEM 76
IVG G SG TA+ LA+ G R L + V + L E
Sbjct: 7 IVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLER 57
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 0.002
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
+GGG G+++ A G + L+E +GG C
Sbjct: 7 AIGGGSGGIASINRAAMYGQK-CALIEA-KELGGTC 40
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.8 bits (92), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
+VG GP G A A+LG + VT++EK + +GG+C
Sbjct: 8 VVGAGPGGYVAAIRAAQLG-QKVTIVEKGN-LGGVC 41
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 0.002
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
I+G G +GLS A LA V +L K G
Sbjct: 12 IIGSGAAGLSLALRLADQH--QVIVLSKGPVTEG 43
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Score = 40.1 bits (92), Expect = 0.003
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 22 TRIGIVGGGPSGLSTAYALAKLGYR----NVTLLEK 53
+ IVG GP+GL A L++ + V +++K
Sbjct: 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 43
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 39.2 bits (90), Expect = 0.003
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
I+GGGP G A +LG L+E +GG C
Sbjct: 10 IIGGGPGGYVAAIRAGQLGIP-TVLVEG-QALGGTC 43
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.0 bits (92), Expect = 0.003
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 20 VNTRIGIVGGGPSGLSTAYALAKLGYR---NVTLLEKYHTVGG 59
V T I I+GGG SG AY A VTL+EK
Sbjct: 20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 0.004
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
++G G +G+ A +++ G LL K
Sbjct: 12 VIGAGGAGMRAALQISQSGQ-TCALLSKVFPTRS 44
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2280 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1p80a2 | 571 | Catalase II {Escherichia coli, HPII [TaxId: 562]} | 100.0 | |
| d1qwla_ | 491 | Catalase I {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d1a4ea_ | 488 | Catalase I {Baker's yeast (Saccharomyces cerevisia | 100.0 | |
| d1dgfa_ | 497 | Catalase I {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1si8a_ | 474 | Catalase I {Enterococcus faecalis [TaxId: 1351]} | 100.0 | |
| d1e93a_ | 476 | Catalase I {Proteus mirabilis [TaxId: 584]} | 100.0 | |
| d1gwea_ | 498 | Catalase I {Micrococcus lysodeikticus [TaxId: 1270 | 100.0 | |
| d1m7sa_ | 484 | Catalase I {Pseudomonas syringae [TaxId: 317]} | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1u5ua_ | 366 | Allene oxide synthase-lipoxygenase protein, N-term | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.76 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.73 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.69 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.63 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.59 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 99.56 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.56 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.54 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.5 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.49 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 99.49 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.46 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.43 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.4 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 99.38 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.36 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 99.35 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 99.32 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.31 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.29 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.26 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.25 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.21 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.11 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.03 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.0 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.97 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 98.96 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.94 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.92 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 98.91 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 98.91 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.91 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 98.89 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.88 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 98.88 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 98.87 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 98.85 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.84 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.78 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.78 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.75 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.74 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.74 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.74 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.73 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.71 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 98.66 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.66 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 98.63 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.61 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.56 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.53 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.48 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.47 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.42 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.4 | |
| d1t8ka_ | 77 | Acyl carrier protein {Escherichia coli [TaxId: 562 | 98.37 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.36 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.34 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.3 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.29 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.26 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.23 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.23 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.22 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.19 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.19 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.17 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.15 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.08 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.08 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.08 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.06 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.04 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.98 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.97 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.96 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 97.95 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.94 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 97.93 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 97.91 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.91 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 97.88 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 97.86 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.86 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.85 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.83 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.82 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.8 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.78 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 97.77 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.75 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 97.74 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 97.73 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.72 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.71 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.7 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.67 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.66 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.59 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.59 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.57 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.56 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 97.55 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.5 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.49 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.47 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.46 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.45 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.42 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.38 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.38 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.36 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.31 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.29 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 97.21 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.16 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.12 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 96.95 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.95 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 96.93 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 96.86 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.83 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.36 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 96.3 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 96.28 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 96.07 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.03 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 95.97 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 95.62 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 95.46 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.96 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.69 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.51 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.47 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.26 | |
| d2ivda2 | 108 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.94 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.77 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 93.24 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 92.35 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.21 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.02 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.97 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.82 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 90.53 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 90.31 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 90.08 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 89.81 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.22 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 89.2 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 88.72 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.3 | |
| d1seza2 | 112 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 87.65 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 87.5 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 84.66 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.19 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 83.75 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 83.62 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 83.07 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 82.58 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 81.95 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 81.93 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 81.76 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 81.6 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 81.39 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 80.45 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 80.02 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.9e-64 Score=684.10 Aligned_cols=514 Identities=18% Similarity=0.216 Sum_probs=407.2
Q ss_pred HHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHHHHH
Q 037878 472 DGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCM 551 (2280)
Q Consensus 472 ~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~l 551 (2280)
..+|+++++. +||++|+++..+++...+++||+||.++++++|+.|+++ ||++||+|+++++|++++++++|||+
T Consensus 75 ~n~ldrh~~~--~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~---Gv~~Gd~V~i~~~n~~e~iv~~lA~~ 149 (643)
T d1pg4a_ 75 ANCLDRHLQE--NGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDL---GIKKGDVVAIYMPMVPEAAVAMLACA 149 (643)
T ss_dssp HHHTGGGHHH--HTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHH---TCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEecccchHHHHHHHHHH
Confidence 3456666654 489999999876666668999999999999999999999 99999999999999999999999999
Q ss_pred HcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchh-------------hccCCCCCCCccc-ccc----
Q 037878 552 RAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSA-------------VRVGSWPNLPWLH-TDS---- 613 (2280)
Q Consensus 552 ~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~-------------~~~~~~~~~~~~~-~~~---- 613 (2280)
++|++++|+++..+.++ +.+++++++++++|+++..... +.....+.+..+. ...
T Consensus 150 ~~Gav~v~l~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~ 222 (643)
T d1pg4a_ 150 RIGAVHSVIFGGFSPEA-------VAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD 222 (643)
T ss_dssp HHTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC
T ss_pred HhCeEEEecCCCCCHHH-------HHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcc
Confidence 99999999999999888 8899999999999987643211 0000111111000 000
Q ss_pred --------ccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHH-HHHHHHHcCCCCCcEEEEEcC
Q 037878 614 --------WVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHN-VKLMRKRYKSTSKTVLVSWLP 684 (2280)
Q Consensus 614 --------~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~-~~~~~~~~~~~~~d~~l~~~p 684 (2280)
...................+++|+++|+|||||||+||||+++|++++.. .......+++.++|++++.+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p 302 (643)
T d1pg4a_ 223 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 302 (643)
T ss_dssp CCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred cccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCC
Confidence 00000000111122334457899999999999999999999999996654 445566788999999999999
Q ss_pred chhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEE
Q 037878 685 QYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764 (2280)
Q Consensus 685 l~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l 764 (2280)
++|++++...++.+|+.|++++++++.....+|..+++.++++++|++.++|++++.+++..... ....++++||.+
T Consensus 303 ~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~---~~~~dl~sLr~i 379 (643)
T d1pg4a_ 303 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---IEGTDRSSLRIL 379 (643)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG---TTTCCCTTCCEE
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh---ccccCCCceEEE
Confidence 99999988888999999999999876555568999999999999999999999999887654322 234679999999
Q ss_pred EEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCC
Q 037878 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPE 844 (2280)
Q Consensus 765 ~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~ 844 (2280)
++|||++++++.+++.+.++ .+++.++|.||+||++.+++....... ....|++|+|+||++++|+|++
T Consensus 380 ~~~G~pl~~~~~~~~~~~~g---~~~~~i~~~yG~TE~g~~~~~~~~~~~--------~~~~gs~G~p~~g~~v~ivd~~ 448 (643)
T d1pg4a_ 380 GSVGEPINPEAWEWYWKKIG---KEKCPVVDTWWQTETGGFMITPLPGAI--------ELKAGSATRPFFGVQPALVDNE 448 (643)
T ss_dssp EEESSCCCHHHHHHHHHHTT---TTCSCEEEEBCCGGGSSCSBCCCTTTC--------CBCTTCCBSBCTTCCEEEECTT
T ss_pred EEEeCCCCHHHHHHHHHHhC---CCCceEEEeechhhccceEEecCCCcc--------CCCCCccccccCCCEEEEECCC
Confidence 99999999999999998864 346789999999999876654322111 2235789999999999999988
Q ss_pred CCcccCCCCCeeEEEEcC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCe
Q 037878 845 TSEEIGEPGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGR 921 (2280)
Q Consensus 845 ~~~~~~p~G~~GEL~i~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~ 921 (2280)
+ ..++.|+.|||+|+| |+++.|||++++.+.+.|.. ..+|||+|||+|+++ ||+|+|+||+||+||++|+
T Consensus 449 g--~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~-----~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ 521 (643)
T d1pg4a_ 449 G--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS-----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 521 (643)
T ss_dssp C--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS-----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTE
T ss_pred C--CCCCCCceEEEEEecCCCcccccccCChhhchhhhcc-----cCCCeEEcCCEEEECCCceEEEecccccEEEECCE
Confidence 6 345789999999999 57899999999999888754 245899999999997 9999999999999999999
Q ss_pred eechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcc
Q 037878 922 NVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVT 1001 (2280)
Q Consensus 922 rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 1001 (2280)
||+|.|||++|.+||+|.+ |+|++++++..++ ..++++...++...+.++.+.+++.+.++++.+
T Consensus 522 ri~p~eIE~~l~~~p~V~e---aaVvg~~d~~~ge------------~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~ 586 (643)
T d1pg4a_ 522 RLGTAEIESALVAHPKIAE---AAVVGIPHAIKGQ------------AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPL 586 (643)
T ss_dssp EEEHHHHHHHHHHSTTEEE---EEEEEEEETTTEE------------EEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred EECHHHHHHHHHhCCCcce---EEEEEEECCCCCe------------EEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcc
Confidence 9999999999999999975 9999988865431 223333445666666666666777777666655
Q ss_pred eeEEEEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 1002 VASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1002 ~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
+.|..++.+++||+|+||||+|++|++++..+
T Consensus 587 ~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 587 ATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp GCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred cCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence 66666777799999999999999999987553
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-62 Score=670.54 Aligned_cols=519 Identities=19% Similarity=0.217 Sum_probs=398.6
Q ss_pred HHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHH-hcCCCCCCCCCEEEEEeCCCHhHHHHHHHH
Q 037878 472 DGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLL-TSRKPVIKPGDRVLLVYVPGLDFVDAFFGC 550 (2280)
Q Consensus 472 ~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~-~~~~~Gv~~Gd~V~i~~~~s~e~~va~LA~ 550 (2280)
...+++++++ +||++|++|.+++....+++||+||.++++++|++|+ ++ ||++||+|+++++|++++++++|||
T Consensus 62 ~n~ldr~a~~--~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~---Gv~~Gd~V~i~~~n~~e~~~~~lA~ 136 (640)
T d1ry2a_ 62 YNCVDRHALK--TPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSM---GVRKGDTVAVYMPMVPEAIITLLAI 136 (640)
T ss_dssp HHHTHHHHTT--CTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTS---CCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHhh--CCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeCCCHHHHHHHHHh
Confidence 5677777776 4899999988654444589999999999999999997 66 9999999999999999999999999
Q ss_pred HHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-----------CCCCCCccccc-------
Q 037878 551 MRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-----------SWPNLPWLHTD------- 612 (2280)
Q Consensus 551 l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-----------~~~~~~~~~~~------- 612 (2280)
+++|++++|+++.++.++ +.++++++++++++++.......... ...........
T Consensus 137 ~~~Gav~vpi~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (640)
T d1ry2a_ 137 SRIGAIHSVVFAGFSSNS-------LRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS 209 (640)
T ss_dssp HHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS
T ss_pred ccCceEeecCCCCCCHHH-------HHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc
Confidence 999999999999999988 88999999999999876433211100 00000000000
Q ss_pred -------cccccccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHH-HHHHcCCCCCcEEEEEcC
Q 037878 613 -------SWVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKL-MRKRYKSTSKTVLVSWLP 684 (2280)
Q Consensus 613 -------~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~-~~~~~~~~~~d~~l~~~p 684 (2280)
..................+..++|+++|+|||||||.||||+++|++++..... ....+...++|++++++|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~p 289 (640)
T d1ry2a_ 210 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 289 (640)
T ss_dssp CCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred ccccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccc
Confidence 000000000111112233456789999999999999999999999997766544 445678899999999999
Q ss_pred chhhhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEE
Q 037878 685 QYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764 (2280)
Q Consensus 685 l~h~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l 764 (2280)
++|+++....++.+|..|++++++++.....++..+++.++++++|++.++|++++.+.+.... .....++++||.+
T Consensus 290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~~~~~~l~sLr~v 366 (640)
T d1ry2a_ 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---YIENHSLKSLRCL 366 (640)
T ss_dssp TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT---SSSSCCCTTCCEE
T ss_pred hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccc---ccccCCCCceEEE
Confidence 9999998888999999999999988766667899999999999999999999998887643222 2234689999999
Q ss_pred EEecCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCC
Q 037878 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPE 844 (2280)
Q Consensus 765 ~~gGe~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~ 844 (2280)
++|||++++++.++|.+.++ ...+.+++.||+||++..++....... .....+++|+|+||++++|+|++
T Consensus 367 ~~gG~~l~~~~~~~~~~~~g---~~~~~i~~~yg~te~~~~~~~~~~~~~-------~~~~~gs~G~p~~g~~~~i~d~~ 436 (640)
T d1ry2a_ 367 GSVGEPIAAEVWEWYSEKIG---KNEIPIVDTYWQTESGSHLVTPLAGGV-------TPMKPGSASFPFFGIDAVVLDPN 436 (640)
T ss_dssp EECSSCCCHHHHHHHHHTTS---CSSSCEEECBCCTTTCSCSEECCTTTC-------CCCCTTCCCEECTTCCEEEECSS
T ss_pred EEecccCcHHHHHHHHHhcC---CCcceEEeeecccccccccccccCCCc-------CCCCCcccccccCCceEEEEeCC
Confidence 99999999999999998763 345679999999999876654332211 12235789999999999999998
Q ss_pred CCcccCCCCCeeEEEEcC--CCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCe
Q 037878 845 TSEEIGEPGKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGR 921 (2280)
Q Consensus 845 ~~~~~~p~G~~GEL~i~G--p~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~ 921 (2280)
++..+.+.++.|||+++| |+++.|||+||+.|.++|.. +.+|||||||+|+++ ||+|+|+||+||+||++|+
T Consensus 437 ~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~-----~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~ 511 (640)
T d1ry2a_ 437 TGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN-----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGH 511 (640)
T ss_dssp STTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS-----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSC
T ss_pred CCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhcc-----CCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCE
Confidence 877766778889999998 68999999999999999864 245899999999997 9999999999999999999
Q ss_pred eechHHHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCC----CCHHHHHHHHHHHHHh
Q 037878 922 NVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKP----VDKDVIENIKTRVVEE 997 (2280)
Q Consensus 922 rI~~~EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~----~~~~l~~~l~~~l~~~ 997 (2280)
||+|.|||++|.+||+|.+ |+|++++++..++ ..+++++..+...... ...++.+.+++.+.++
T Consensus 512 ~I~p~eIE~~l~~~p~V~~---a~Vvg~~d~~~ge---------~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 579 (640)
T d1ry2a_ 512 RLSTAEIEAAIIEDPIVAE---CAVVGFNDDLTGQ---------AVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKD 579 (640)
T ss_dssp CBCHHHHHHHHHSSTTEEE---EEEECCCCCTTSC---------CCEEEEEEC------------CCSHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHhCCCccE---EEEEEEECCCCCe---------EEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999975 8999998875432 2334443321111000 0023444555555554
Q ss_pred cCcceeEEEEecCCCccCCCCcccchHHHHHHhhc
Q 037878 998 HGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 998 ~~~~~~~~~lv~~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
++.++.|..++.+++||+|+||||+|++|++++..
T Consensus 580 L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 614 (640)
T d1ry2a_ 580 IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 614 (640)
T ss_dssp TCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhC
Confidence 44444444556679999999999999999887643
|
| >d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase II species: Escherichia coli, HPII [TaxId: 562]
Probab=100.00 E-value=6.3e-62 Score=604.51 Aligned_cols=298 Identities=19% Similarity=0.275 Sum_probs=270.1
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||++||||+||+|+|++++++++++++++|+ +|++|||++||||++|+++ |+.+|+|||||||+++ +|
T Consensus 94 ErIPERvvHAKG~gA~G~F~vt~dis~~t~A~~F~~~Gk~tPV~vRFStv~G~~gs~Dt~rD~RGfAvKFyt~-eG---- 168 (571)
T d1p80a2 94 ERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRQIRGFATKFYTE-EG---- 168 (571)
T ss_dssp CCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSCTTCCEEEEEEEEESSSCTTSCTTSSSCEEEEEEEEET-TE----
T ss_pred ccCccccccCCccceEEEEEECCcchhhhhhhhccCCCceeEEEEEeecCCCCCCCCcccCCCceEEEEEEcC-CC----
Confidence 78999999999999999999999999999999996 6899999999999999864 9999999999999997 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhccC--------------c---chhhhhhhcccCCCccccceeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRV--------------P---HIRDAVWKSLRLSDSYAEMHYYSN 1849 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~p~s~~~~~y~s~ 1849 (2280)
+|||||||+||||+||+++|++|+++.+++|.+.+++. | +....+++.+++|.||++|+|||+
T Consensus 169 n~DlVgnN~PVFFirD~~kFpdfi~a~k~~p~t~~p~~~~~~~~~~dF~s~~Pes~h~~~~l~sdrg~P~Syr~m~gfgv 248 (571)
T d1p80a2 169 IFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGI 248 (571)
T ss_dssp EEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTCCCSSCCCSHHHHHHHHHCGGGHHHHHHHHSGGGSBSCGGGSCEECC
T ss_pred ccceeeccCCccccCCHHHHHHHHHHhccCccccCCcccccHHHHHHHHhcChhHHHHHHHHhccCCCCCcccccCcccc
Confidence 59999999999999999999999999999886655443 2 334445566789999999999999
Q ss_pred eeEEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEE
Q 037878 1850 ICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQ 1929 (2280)
Q Consensus 1850 ~~~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ 1929 (2280)
|+|+|+|++|+.+||||+|+|.+|+++++.+|+.+.... ++|||++||+++|++|++++|+|+||
T Consensus 249 htF~fvn~~G~~~~VKfh~~P~~Gv~~Lt~eEA~~l~g~---------------dpDfl~~DL~~aI~~G~~p~w~L~vQ 313 (571)
T d1p80a2 249 HTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGR---------------DPDFHRRELWEAIEAGDFPEYELGFQ 313 (571)
T ss_dssp SCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHH---------------CTTHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred cceEEEccCCCEEEEEEEEEcCCCcccCCHHHHHHhhCC---------------CccHHHHHHHHHHHcCCCCeEEEEEE
Confidence 999999999999999999999999999999988765322 35699999999999999999999999
Q ss_pred EeeCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchh
Q 037878 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRS 2007 (2280)
Q Consensus 1930 ~~~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~ 2007 (2280)
+++++|.+.++|+++|+||+|||+++|+++||+|+||+++++ ++|||++|+|+|+++||+||+ |||||+|.
T Consensus 314 l~~~~Da~~~~~~i~D~TK~WPe~~~P~~~VG~LtLnrnp~n~fae~Eq~aF~P~~lvpGI~~S~-------DpmLq~R~ 386 (571)
T d1p80a2 314 LIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTN-------DPLLQGRL 386 (571)
T ss_dssp EEEGGGTTCSSSCTTCTTCCCCTTTSCEEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCC-------CHHHHHHH
T ss_pred ecCHhHHhcCCCCcCCCceeCCcccCceEeeeEEEecCCCCchhhhhhhhccccccccCCcccCC-------Cchhhhhh
Confidence 999999999999999999999999999999999999999998 899999999999999999999 99999999
Q ss_pred hHHHhhhHhhcCC-CCchhHHHhhhcccccccCCCCCc
Q 037878 2008 LIYEICQHLRNGE-PLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2008 ~~Y~~s~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
++|.+||++|+|. + ++|++|| .|.|++
T Consensus 387 faY~dtqr~RlGg~N--------~~qlPvN--~p~~~~ 414 (571)
T d1p80a2 387 FSYTDTQISRLGGPN--------FHEIPIN--RPTCPY 414 (571)
T ss_dssp HHHHHHHHHHTSSTT--------GGGSGGG--CCSSCC
T ss_pred hhhHHHHHhhcCCCc--------hhhcccc--CCcCcc
Confidence 9999999999955 6 5666666 455553
|
| >d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=2.9e-61 Score=600.45 Aligned_cols=298 Identities=20% Similarity=0.305 Sum_probs=272.0
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||++||||+||+|+|++++|+++++++++|+ +|++|||++||||++|+++ |+.+|+|||||||+++ +|
T Consensus 48 eripER~vHAKG~gA~G~F~vt~d~~~~t~a~~f~~~Gk~~Pv~vRFSt~~G~~gs~D~~rd~RGfAiKf~t~-eG---- 122 (491)
T d1qwla_ 48 ERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTE-EG---- 122 (491)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTSCSSSSSCCEEEEEEEET-TE----
T ss_pred ccCccccccCCccceEEEEEECCCchHhHhhhhhccCCcccceEEecccCCCCCCCCcccCCccceEEEEEcC-CC----
Confidence 68999999999999999999999999999999996 5899999999999999864 9999999999999987 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+|+||+||+++|++|+++.+++|++..+ .+| +....+.+.+++|.||++++|||.|+|+
T Consensus 123 n~DlV~nN~PvFfirdp~~F~~~i~a~k~~P~t~~~d~~~~~~f~~~~Pes~~~~~~l~s~r~~p~S~~~~~~~g~htf~ 202 (491)
T d1qwla_ 123 NWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFS 202 (491)
T ss_dssp EEEEEEESSSCCSCSSGGGHHHHHHHHSCCTTTCSCCHHHHHHHHHHCGGGHHHHHHHHSGGGSBSSGGGSCEECCSCEE
T ss_pred ceeeeecccceeecCCHHHHHHHHHHhccCccccccchHHHHHHHhhCHhHHHHHHHHhccCCCCCcccCCCccccceEE
Confidence 499999999999999999999999999998865443 333 4455566777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||+++|.+|+++++.+|+.+.... .+||+.+||+++|++|++++|+|+||++++
T Consensus 203 ~vn~~G~~~~vK~~~~P~~G~~~lt~eea~~l~g~---------------dpd~~~~dl~~ai~~g~~~~w~l~vQl~~~ 267 (491)
T d1qwla_ 203 LINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKH---------------DPDSNQRDLFDAIARGDYPKWKLSIQVMPE 267 (491)
T ss_dssp EECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHTT---------------CTTHHHHHHHHHHHTTCCCEEEEEEEEEEG
T ss_pred eEcccCCEEEEEEEEEcCCccccCCHHHHHHhccC---------------CchHHHHhHHHHHHcCCCceeEEEEEecCH
Confidence 99999999999999999999999999988766432 356999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.++.+|+++|+||+|||+++|+++||+|+||+++++ ++|||++|+|+|+++||+||+ |||||+|.++|.
T Consensus 268 ~d~~~~~~d~~D~TkvWpe~~~P~i~VG~Ltlnr~~~n~f~e~eq~aF~P~~lvpGI~~S~-------Dp~Lq~R~faY~ 340 (491)
T d1qwla_ 268 EDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSP-------DRMLQGRLFSYG 340 (491)
T ss_dssp GGTTTCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCC-------CHHHHHHHHHHH
T ss_pred hHHhcCCCCCCCCCeecccCCCceEEeeEEEecCCCccchhhhhccccccccccCCcCCCC-------CchhhhhhhhhH
Confidence 99999999999999999999999999999999999998 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
+||++|+|.+ |+|++|| .|.|++
T Consensus 341 dt~r~RlG~N--------y~qlPvN--~p~~~v 363 (491)
T d1qwla_ 341 DTHRYRLGVN--------YPQIPVN--KPRCPF 363 (491)
T ss_dssp HHHHHHHCTT--------GGGSGGG--SCSSCC
T ss_pred HHHhhccCCC--------HhhCcCC--CCCCcc
Confidence 9999999998 6777666 444443
|
| >d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-61 Score=602.74 Aligned_cols=292 Identities=17% Similarity=0.257 Sum_probs=268.7
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||++||||+||+|+|++++|+++++++++|+ +|+++||++|||+++|+++ |+.+|+|||||||+++ +|
T Consensus 48 eripER~vHAKG~gA~G~F~~t~d~s~~t~a~~f~~~Gk~~PV~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~-eG---- 122 (488)
T d1a4ea_ 48 ENIPQRNPHAHGSGAFGYFEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGFATKFYTE-EG---- 122 (488)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTCCSSSSSCCEEEEEEEET-TE----
T ss_pred ccCccccccCCccceEEEEEECCCchHHHhhHhhccCCcccceEEeeecCCCCCCCccccCCCCceEEEEEcC-CC----
Confidence 78999999999999999999999999999999995 6999999999999999864 9999999999999987 55
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhccCc---------------chhhhhhhcccCCCccccceeeeeee
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVP---------------HIRDAVWKSLRLSDSYAEMHYYSNIC 1851 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~p~s~~~~~y~s~~~ 1851 (2280)
+|||||||+||||+||+++|++|+++.+++|++..++.. +....+.+.+++|.||++++|||+|+
T Consensus 123 n~DlV~nn~PvFfird~~~F~~fl~a~k~~p~t~~~d~~~~~df~s~p~~~es~~~~~~l~s~~~~P~sy~~~~~~g~ht 202 (488)
T d1a4ea_ 123 NLDWVYNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDADMFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHT 202 (488)
T ss_dssp EEEEEEESSSSCSCSCTTHHHHHHHHHSCCTTTCSCCHHHHHHHHTSGGGGGGHHHHHHHHSGGGSBSCGGGCCEECCSC
T ss_pred ccceeecccCceecCCHHHHHHHHHhcCCCCCCCCCChHHHHHHHhCCCchhhHHHHHHHhccCCCCCCcccccccccce
Confidence 499999999999999999999999999998865443222 33344567779999999999999999
Q ss_pred EEEEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEe
Q 037878 1852 RLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIR 1931 (2280)
Q Consensus 1852 ~~~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~ 1931 (2280)
|+|+|++|+.+||||+|+|.+|+.+++.+|+.+.... .+|||++||+++|++|++++|+|+||++
T Consensus 203 f~~vn~~G~~~~vK~~~~P~~G~~~L~~eEA~~l~g~---------------dpd~l~~DL~~~i~~g~~p~w~l~vQl~ 267 (488)
T d1a4ea_ 203 YKWSNKNGDWHYVQVHIKTDQGIKNLTIEEATKIAGS---------------NPDYCQQDLFEAIQNGNYPSWTVYIQTM 267 (488)
T ss_dssp EEEECTTSCEEEEEEEEEESSCCCBCCHHHHHHHHHH---------------CTTHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred EEEEccCCCEEEEEEEEEcCCCCCCCCHHHHHHhccC---------------CccHHHHHHHHHHHcCCCceEEEEEEee
Confidence 9999999999999999999999999999988865322 3569999999999999999999999999
Q ss_pred eCCCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhH
Q 037878 1932 PIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLI 2009 (2280)
Q Consensus 1932 ~~~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~ 2009 (2280)
+++|.+.++|+++|+||+|||+++|+++||+|+||+++++ ++|||++|+|+|+++||++|+ |||||+|.++
T Consensus 268 ~~~d~~~~~~~i~D~Tk~WPe~~~P~i~vG~l~ln~~~~n~f~e~Eq~aF~P~~lvpGI~~S~-------Dp~Lq~R~fa 340 (488)
T d1a4ea_ 268 TERDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPSTTVPYQEASA-------DPVLQARLFS 340 (488)
T ss_dssp CHHHHHTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEEECS-------CHHHHHHHHH
T ss_pred CHhHhhcCCCCCcCCceeeccccCcceeeeEEEeccCccccchhhhcccccccccCCcccCCC-------Cccccccccc
Confidence 9999999999999999999999999999999999999998 899999999999999999999 9999999999
Q ss_pred HHhhhHhhcCCCCchhHHHhhhccccc
Q 037878 2010 YEICQHLRNGEPLPESWRIFLEQSDVK 2036 (2280)
Q Consensus 2010 Y~~s~~~R~~~~~~~~~~~~~~~~~~~ 2036 (2280)
|.+||++|+|.+ |+|++||
T Consensus 341 Y~dt~r~RlG~N--------~~qlPvN 359 (488)
T d1a4ea_ 341 YADAHRYRLGPN--------FHQIPVN 359 (488)
T ss_dssp HHHHHHHHTCTT--------GGGSGGG
T ss_pred hHHHhhcccCcC--------hhhcccC
Confidence 999999999998 6777776
|
| >d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-61 Score=601.18 Aligned_cols=297 Identities=21% Similarity=0.337 Sum_probs=272.4
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||++||||+|++|+|++++|+++++++++|+ +|+++||++||||++|+++ |+.+|+|||||||+++ + +
T Consensus 63 eripER~vHAKG~ga~G~F~vt~d~s~~t~a~~f~~~G~~tpV~vRFSt~~G~~~s~D~~rd~RG~AiKF~t~-e----g 137 (497)
T d1dgfa_ 63 ERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTE-D----G 137 (497)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTSCSSSSSCCEEEEEEEET-T----E
T ss_pred cccccccccCCccceEEEEEECcchHHHHhhhhhhcCCCCceEEEeeecCCCCCCCCccCCCCCeeEEEEecC-C----C
Confidence 68999999999999999999999999999999996 6999999999999999864 9999999999999986 3 4
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||+|||+||||+||+++|++|+++.+++|++..+ .+| +....+++.+++|.||++++|||+|+|+
T Consensus 138 n~DlV~nN~PvFfird~~~F~~fi~a~k~~p~t~~~d~~~~~dF~~~~Pes~~~~~~l~s~r~~P~Sy~~~~~~g~htf~ 217 (497)
T d1dgfa_ 138 NWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFK 217 (497)
T ss_dssp EEEEEEESSSSCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHHCGGGHHHHHHHTSGGGSBSSSTTSCEECCSCEE
T ss_pred ccccceecCCccccCCHHHHHHHHHHhccCCccCCCChHHHHHHHhcCHhHHHHHHHHhccCCCCCCcccCcccccceEE
Confidence 599999999999999999999999999998865443 344 3444556777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||+|+|.+|+++++.+|+.+.... ++||+++||+++|++|++++|+|+||++++
T Consensus 218 ~vn~~G~~~~VK~~~~P~~G~~~l~~eea~~l~g~---------------dpd~l~~DL~~~i~~G~~p~w~l~vQl~~~ 282 (497)
T d1dgfa_ 218 LVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQE---------------DPDYGIRDLFNAIATGKYPSWTFYIQVMTF 282 (497)
T ss_dssp EECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHHH---------------CTTHHHHHHHHHHHTTCCCEEEEEEEEECH
T ss_pred EEecCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCC---------------CccHHHHHHHHHHHcCCCCceEEEEEecCh
Confidence 99999999999999999999999999988766322 356999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.++.+++++|+||+|||+++|+++||+|+|++++++ ++|||++|||+|+++||+||+ |||||+|.++|.
T Consensus 283 ~d~~~~~~~i~D~TkvWpe~~~P~i~VG~LtLn~~~~n~~~e~eq~aF~P~~l~pGI~~S~-------Dp~Lq~R~~aY~ 355 (497)
T d1dgfa_ 283 NQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASP-------DKMLQGRLFAYP 355 (497)
T ss_dssp HHHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSSHHHHTTTCCCCTTCCCTTEEECS-------CHHHHHHHHHHH
T ss_pred hhhhcCCCCCccCceeccccCCccEEeeeEEeccCCccchhhcccceeccccccCcccCCC-------CchhhhhhhhhH
Confidence 99999999999999999999999999999999999988 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhcccccccCCCCCccc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVKVDLSGCPMAA 2046 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2280)
+||++|+|.+ ++|++|| ||..+
T Consensus 356 dsqr~RlG~N--------~~qlPvN-----~P~~~ 377 (497)
T d1dgfa_ 356 DTHRHRLGPN--------YLHIPVN-----CPYRA 377 (497)
T ss_dssp HHHHHHTCTT--------GGGSGGG-----SCTTS
T ss_pred HHHhhccCCC--------hhhCCcC-----CCCcC
Confidence 9999999999 6888888 77533
|
| >d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=3.1e-61 Score=599.13 Aligned_cols=292 Identities=21% Similarity=0.329 Sum_probs=269.8
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||++||||+||+|+|++++++++++++++|+ +|+++||++|||+++|++. |+.+|+|||||||+++ +|
T Consensus 43 eripeR~vHAKG~ga~G~F~~t~d~s~~t~a~~f~~~Gk~tPV~vRFSt~~G~~~s~D~~rd~RG~AlKf~~~-eG---- 117 (474)
T d1si8a_ 43 ERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTD-EG---- 117 (474)
T ss_dssp CCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTCCSSSSSCCEEEEEEEET-TE----
T ss_pred ccCccccccCCccceEEEEEECCcchhhhhhHhhccCCceeEEEEeeecCCCCCCCCCccccCcceEEEEEcC-CC----
Confidence 78999999999999999999999999999999996 6999999999999999864 9999999999999987 45
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhh----------hccCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEH----------VKRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||||||+||||++|+++|++|+++.+++|++. +..+| +....+.+.+++|.||++++|||+|+|+
T Consensus 118 ~~DlV~nn~PvFfird~~~F~~fi~a~k~~P~t~~~d~~~~~~f~~~~Pes~~~~~~l~s~r~~P~sy~~~~~~g~htf~ 197 (474)
T d1si8a_ 118 NYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFK 197 (474)
T ss_dssp EEEEEEESSSSCSCSCGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEE
T ss_pred ceeeeeccCCceecCCHHHHHHHHHhccCCCCcCCCChHHHHHHHhcCHHHHHHHHHHhccCCCCCccCCCcccccceEE
Confidence 4999999999999999999999999999887544 34555 4444566778999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||+|+|.+|+++++.+|+.+... +.+|||++||.++|++|++++|+|+||++++
T Consensus 198 ~vn~~G~~~~vK~~~~P~~Gv~~l~~~ea~~l~g---------------~dpD~l~~dL~~~i~~g~~~~w~l~vQl~~~ 262 (474)
T d1si8a_ 198 WVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAG---------------KNPDFHIEDLHNAIENQEFPSWTLSVQIIPY 262 (474)
T ss_dssp EECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCTTHHHHHHHHHHHTTCCCEEEEEEEEEEH
T ss_pred EEccCCCEEEEEEEEEeCCCcCCCCHHHHHHhhc---------------CCCcHHHHHHHHHHHcCCCCceEEEEEecCh
Confidence 9999999999999999999999999988776532 2457999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.++++|+++|+||+|||+++|+++||+|+|++++++ ++|||++|+|+++++||+||+ |||||+|.++|.
T Consensus 263 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~LtL~~~~~n~~~e~eq~~F~P~~l~~GI~~S~-------Dp~Lq~R~~aY~ 335 (474)
T d1si8a_ 263 ADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASP-------DKLLQGRLFAYG 335 (474)
T ss_dssp HHHTTCHHHHTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCS-------CHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCccccCccCCceEEeeeEeeccCCcccchhhhhhccccccCCCCccCCC-------CchhhhhhhhhH
Confidence 99999999999999999999999999999999999998 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhccccc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVK 2036 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~ 2036 (2280)
+|+++|+|.+ ++|++||
T Consensus 336 ds~~~Rlg~n--------~~qlPvN 352 (474)
T d1si8a_ 336 DAHRHRVGAN--------SHQLPIN 352 (474)
T ss_dssp HHHHHHTCTT--------GGGSGGG
T ss_pred HHHhccCCCC--------hhhcccc
Confidence 9999999998 6787777
|
| >d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Proteus mirabilis [TaxId: 584]
Probab=100.00 E-value=5.2e-61 Score=598.72 Aligned_cols=292 Identities=23% Similarity=0.296 Sum_probs=269.6
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccC-CCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFH-PGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSS 1786 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~-~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~ 1786 (2280)
+|++||.+||||+||+|+|++++|+++++++++|+ +|++|||++||||++|++. |+.+|+|||||||+++ +|
T Consensus 43 eripeR~vHAKG~gA~G~Fevt~d~s~~t~a~~f~~~Gk~tPv~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~-eG---- 117 (476)
T d1e93a_ 43 EVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTE-EG---- 117 (476)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTSCSSSSSCCEEEEEEEET-TE----
T ss_pred ccCccccccCCccceEEEEEECCCchHHHhhhhhccCCccceEEEecccCCCCCCCCccCCCCceEEEEEEcC-CC----
Confidence 78999999999999999999999999999999995 6899999999999999864 9999999999999987 44
Q ss_pred ceeeecccccccccCChhhHHHHHhhccchhhhhhc----------cCc---chhhhhhhcccCCCccccceeeeeeeEE
Q 037878 1787 LLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVK----------RVP---HIRDAVWKSLRLSDSYAEMHYYSNICRL 1853 (2280)
Q Consensus 1787 ~~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~ 1853 (2280)
+|||+|||+|+||++|+++|++|+++.+++|++..+ .+| +....+.+.+++|.||++++|||.|+|+
T Consensus 118 n~D~v~nn~PvFfirdp~~F~~~i~a~k~~p~t~~~d~~~~~~F~~~~Pes~~~~~~l~s~~~~p~s~~~~~~~g~htf~ 197 (476)
T d1e93a_ 118 NWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYS 197 (476)
T ss_dssp EEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGCCEECCSCEE
T ss_pred ceeeeecccceeecCCHHHHHHHHHHhccCCCCCCCChHHHHHHHhcCHhHHHHHHHhcccCCCCCccCCCcccccceEE
Confidence 599999999999999999999999999998865543 334 4444566777999999999999999999
Q ss_pred EEEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeC
Q 037878 1854 FRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPI 1933 (2280)
Q Consensus 1854 ~~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~ 1933 (2280)
|+|++|+.+||||+++|.+|+++++.+|+.+.... ++|||++||.++|++|++++|+|+||++++
T Consensus 198 ~~n~~G~~~~vK~~~~P~~G~~~l~~eea~~l~g~---------------d~d~l~~dL~~~i~~g~~~~w~l~vQl~~~ 262 (476)
T d1e93a_ 198 FINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGK---------------DRESSQRDLFEAIKRGDYPRWKLQIQIMPE 262 (476)
T ss_dssp EECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHH---------------CTTHHHHHHHHHHHTTCCCEEEEEEEEEEG
T ss_pred eEccCCCEEEEEEEEEcCCCcccCCHHHHHHhcCC---------------CccHHHHHHHHHHHcCCCceEEEEEeccCh
Confidence 99999999999999999999999999988765322 356999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHH
Q 037878 1934 PQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYE 2011 (2280)
Q Consensus 1934 ~d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~ 2011 (2280)
+|.++.+|+++|+||+|||+++|+++||+|+|++++++ ++|||++|||+|+++||+||+ |||||+|.++|.
T Consensus 263 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~LtL~~~~~n~~~e~eq~aF~P~~lv~Gi~~S~-------Dp~Lq~R~faY~ 335 (476)
T d1e93a_ 263 KEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSP-------DKMLQGRLFSYG 335 (476)
T ss_dssp GGGGTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCS-------CHHHHHHHHHHH
T ss_pred hhhhcCCCCCccCceecccCCCceEEeeEEeeccCCccchhhhhccccccccccCCcccCC-------CchhhhhhhhhH
Confidence 99999999999999999999999999999999999988 899999999999999999999 999999999999
Q ss_pred hhhHhhcCCCCchhHHHhhhccccc
Q 037878 2012 ICQHLRNGEPLPESWRIFLEQSDVK 2036 (2280)
Q Consensus 2012 ~s~~~R~~~~~~~~~~~~~~~~~~~ 2036 (2280)
+|+++|+|.+ ++|++||
T Consensus 336 dt~r~RlG~N--------~~qlPvN 352 (476)
T d1e93a_ 336 DAHRYRLGVN--------HHQIPVN 352 (476)
T ss_dssp HHHHHHHCTT--------GGGSTTT
T ss_pred HHhhcccCCC--------cccCCCC
Confidence 9999999999 6888777
|
| >d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId: 1270]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Micrococcus lysodeikticus [TaxId: 1270]
Probab=100.00 E-value=7.1e-61 Score=599.35 Aligned_cols=298 Identities=19% Similarity=0.302 Sum_probs=272.4
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCcc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSSL 1787 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~~ 1787 (2280)
+|++||++||||+||+|+|++++|+++++++++|++|++|||++|||+++|++. |+.+|+|||||||+++ +| +
T Consensus 48 eripeR~vHAKG~ga~G~F~v~~d~s~~t~a~lf~~Gk~~pV~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~-eG----~ 122 (498)
T d1gwea_ 48 MNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTE-EG----N 122 (498)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSTTCEEEEEEEEECSSSCTTSCTTSSCCCEEEEEEEET-TE----E
T ss_pred ccCccccccCCccceEEEEEECCchhHhhhhhhccCCCeeeEEEEeecCCCCCCCCccCCCCCceEEEEEcC-CC----C
Confidence 789999999999999999999999999999999999999999999999999864 9999999999999987 44 4
Q ss_pred eeeecccccccccCChhhHHHHHhhccchhhh----------hhccCc---chhhhhhhcccCCCccccceeeeeeeEEE
Q 037878 1788 LDLTLKTGNAFYARTIGDFATWLVCGLAAREE----------HVKRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRLF 1854 (2280)
Q Consensus 1788 ~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~~ 1854 (2280)
|||+|||+||||++|+++|++|+++.+++|+. ++..+| +....+.+.+++|.||++++|||.|+|+|
T Consensus 123 ~DlV~nn~PVFfirdp~~F~~fi~a~k~~p~t~~~d~~~~~df~~~~Pes~~~~~~l~s~r~~P~Sy~~~~~~g~htf~~ 202 (498)
T d1gwea_ 123 YDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLW 202 (498)
T ss_dssp EEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCCBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEE
T ss_pred ccEEeccCCCCCcCCHHHHHHHHHHhccCCccCCCChhHHHHHHHcCHHHHHHHHHHhccCCCCCCcccccccceeeEEE
Confidence 99999999999999999999999999888754 344555 44455667789999999999999999999
Q ss_pred EEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCC
Q 037878 1855 RFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIP 1934 (2280)
Q Consensus 1855 ~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~ 1934 (2280)
+|++|+.+||||+++|.+|+++++.+|+.+.... .+|||++||+++|++|++++|+|+||+++++
T Consensus 203 vn~~G~~~~vK~~~~P~~G~~~l~~eEa~~l~~~---------------dpd~l~~DL~~~i~~g~~~~w~L~vQl~~~~ 267 (498)
T d1gwea_ 203 VNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGE---------------NADFHRQDLFESIAKGDHPKWDLYIQAIPYE 267 (498)
T ss_dssp ECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHH---------------CTTHHHHHHHHHHHTTCCCEEEEEEEEEETT
T ss_pred EccCCCEEEEEEEEEeCCCccCCCHHHHHHhcCC---------------CchhhhhhHHHHHHcCCCceEEEEEEeeccc
Confidence 9999999999999999999999999988765322 3579999999999999999999999999999
Q ss_pred CccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHHh
Q 037878 1935 QDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEI 2012 (2280)
Q Consensus 1935 d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~ 2012 (2280)
|.++++|+++|+||.|||+++|+++||+|+||+++++ ++|||++|+|+|+++||+||+ |||||+|.++|.+
T Consensus 268 d~~~~~~d~~D~TkvWpe~~~P~i~VG~LtLnr~~~n~f~e~eq~aF~P~~lvpGI~~S~-------Dp~Lq~R~faY~d 340 (498)
T d1gwea_ 268 EGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSP-------DRMLLGRAFAYHD 340 (498)
T ss_dssp HHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCS-------CHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCccCccccCceEEeEEEEeccCCccccccccccccCcccccCcccCCC-------CchhccccchhHH
Confidence 9999999999999999999999999999999999998 999999999999999999999 9999999999999
Q ss_pred hhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2013 CQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2013 s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
||++|+|.+ ++|++|| .|-|++
T Consensus 341 t~~~Rlg~N--------~~qlPvN--~P~~~~ 362 (498)
T d1gwea_ 341 AQLYRVGAH--------VNQLPVN--RPKNAV 362 (498)
T ss_dssp HHHHHTCTT--------GGGSGGG--CCSSCC
T ss_pred HHhhccCCC--------Hhhcccc--CCCCcc
Confidence 999999999 5677666 444443
|
| >d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Pseudomonas syringae [TaxId: 317]
Probab=100.00 E-value=3e-60 Score=591.69 Aligned_cols=296 Identities=19% Similarity=0.263 Sum_probs=269.2
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCC--cccccccccEEEeeccCCCCCCcc
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADD--DARIDARGAAIRIFSDLNGNTSSL 1787 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~--D~~~~~rG~Aik~~~~~~~~~~~~ 1787 (2280)
+|++||++||||+||+|+|++++++++++++++|++|++|||++||||++|++. |+.+|+|||||||+++ + ++
T Consensus 44 eripeR~vHAKG~ga~G~F~v~~d~~~~t~a~~f~~G~~~Pv~vRFSt~~G~~~s~D~~rd~RG~AiKf~~~-e----g~ 118 (484)
T d1m7sa_ 44 ERIPERVVHARGTGVKGEFTASADISDLSKATVFKSGEKTPVFVRFSSVVHGNHSPETLRDPHGFATKFYTA-D----GN 118 (484)
T ss_dssp CCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSTTCEEEEEEEEECSSSCTTCCTTSCSCCEEEEEEEET-T----EE
T ss_pred ccCccccccCCccceEEEEEECCchhhhhhhhhcCCCCEeEEEEecccCCCCCCCCcccccCceeEEEEEcC-C----Cc
Confidence 789999999999999999999999999999999998999999999999999864 9999999999999987 3 45
Q ss_pred eeeecccccccccCChhhHHHHHhhccchhhhhh----------ccCc---chhhhhhhcccCCCccccceeeeeeeEEE
Q 037878 1788 LDLTLKTGNAFYARTIGDFATWLVCGLAAREEHV----------KRVP---HIRDAVWKSLRLSDSYAEMHYYSNICRLF 1854 (2280)
Q Consensus 1788 ~D~~~~n~p~f~~~~~~~f~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~p~s~~~~~y~s~~~~~~ 1854 (2280)
|||||||+||||++|+++|++|+++.+++|+... ..+| +....+++..++|.||++++|||+|+|+|
T Consensus 119 ~DlV~nn~PvFfird~~~F~~fi~a~k~~p~t~~~d~~~~~~f~~~~Pes~~~~~~l~s~~~~P~Sy~~~~~~g~htf~~ 198 (484)
T d1m7sa_ 119 WDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKL 198 (484)
T ss_dssp EEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTSSCCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEE
T ss_pred cceeeccCCccccCCHHHHHHHHHHhCcCCccCCCChHHHHHHHhcChhHHHHHHHHhccCCCCCCccccCcccceeEEE
Confidence 9999999999999999999999999998875443 3444 55556677789999999999999999999
Q ss_pred EEeCCcEEEEEEEeecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCC
Q 037878 1855 RFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIP 1934 (2280)
Q Consensus 1855 ~~~~g~~~~vk~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~ 1934 (2280)
+|++|+.+||||+|+|.+|+++++.+|+.+... +.+|||++||.++|++|++++|+|+||+++++
T Consensus 199 ~n~~G~~~~vK~~~~P~~g~~~l~~eea~~l~g---------------~dpd~l~~dL~~~i~~g~~~~w~l~vQl~~~~ 263 (484)
T d1m7sa_ 199 VNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQS---------------KDYSHLTNDLVGAIKKGDFPKWDLYVQVLKPE 263 (484)
T ss_dssp ECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHH---------------HCSCHHHHHHHHHHHTTCCCEEEEEEEEECGG
T ss_pred EccCCCEEEEEEEEEeCCCCCCCCHHHHHHhcC---------------CCccHHHHHHHHHHHcCCCceeEEEEEEecHh
Confidence 999999999999999999999999988776532 23579999999999999999999999999999
Q ss_pred CccccccccccCCCCCCCCCCCceeeEEEEecCCCCh--hhhccccccCCcCCCccccccCCCcccccccccchhhHHHh
Q 037878 1935 QDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEI 2012 (2280)
Q Consensus 1935 d~~~~~~~~~D~t~~W~~~~~p~~~vg~l~i~~~~~~--~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~ 2012 (2280)
|.+..+++++|+||+||| +|+++||+|+|++++++ ++|||++|||+|+++||+||+ |||||+|.++|.+
T Consensus 264 d~~~~~~~i~D~Tk~Wpe--~P~~~vG~LtL~~~~~n~fae~Eq~aF~P~~lv~GI~~S~-------Dp~Lq~R~faY~d 334 (484)
T d1m7sa_ 264 ELAKFDFDPLDATKIWPD--VPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSE-------DRLLQGRVFSYAD 334 (484)
T ss_dssp GGGGSSSCTTCTTCCCSS--SCEEEEEEEEEEEECSCHHHHTTTCCCCTTCCCTTEEECS-------CHHHHHHHHHHHH
T ss_pred HhhcCCCCCcCCCeEccC--CceEEEEEEEEecCCcchhhHhHHHHhhcccCcCcccCCC-------CchhhccchhhHH
Confidence 999999999999999994 89999999999999988 899999999999999999999 9999999999999
Q ss_pred hhHhhcCCCCchhHHHhhhcccccccCCCCCc
Q 037878 2013 CQHLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044 (2280)
Q Consensus 2013 s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2280)
|+++|+|.+ ++|++|| .|.|++
T Consensus 335 t~r~R~g~n--------~~qlPvN--~P~~~~ 356 (484)
T d1m7sa_ 335 TQMYRLGAN--------GLSLPVN--QPKVAV 356 (484)
T ss_dssp HHHHHTCTT--------GGGSGGG--CCSSCC
T ss_pred HhhccCCCc--------cccCCCC--CCCCcc
Confidence 999999999 5777666 444443
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-58 Score=619.52 Aligned_cols=516 Identities=20% Similarity=0.266 Sum_probs=362.4
Q ss_pred CCCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCC
Q 037878 461 PGVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPG 540 (2280)
Q Consensus 461 ~~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s 540 (2280)
|..-+....||.++|++++++. ||++|+.+.+. | +.+++||+||+++++++|++|.++ |+++||+|+++++|+
T Consensus 3 p~~~~~~~~~l~~~l~~~a~~~--pd~~av~~~~~-g-~~~~~Ty~el~~~~~~~A~~L~~~---Gv~~gd~V~i~~~n~ 75 (534)
T d1v25a_ 3 PSTMMDEELNLWDFLERAAALF--GRKEVVSRLHT-G-EVHRTTYAEVYQRARRLMGGLRAL---GVGVGDRVATLGFNH 75 (534)
T ss_dssp BCCBCCCCCCTHHHHHHHHHHS--TTCEEEEECTT-S-CEEEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSS
T ss_pred CCccCCCCCCHHHHHHHHHHHc--CCCeEEEEecC-C-ceEEEcHHHHHHHHHHHHHHHHHC---CcCCCCEEEEEeCCC
Confidence 3333444558999999999884 89999987653 3 347899999999999999999999 999999999999999
Q ss_pred HhHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCccc--cccccc
Q 037878 541 LDFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLH--TDSWVK 616 (2280)
Q Consensus 541 ~e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 616 (2280)
+++++++|||+++|++++|+++..+.++ +.+++++++++.++++.......... ..+...... ......
T Consensus 76 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~-------l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (534)
T d1v25a_ 76 FRHLEAYFAVPGMGAVLHTANPRLSPKE-------IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE 148 (534)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT
T ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHH-------HHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccc
Confidence 9999999999999999999999999888 88999999999999987655432211 011111100 000000
Q ss_pred c--ccccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHH--HHcCCCCCcEEEEEcCchhhhhHH
Q 037878 617 N--SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMR--KRYKSTSKTVLVSWLPQYHDMGLI 692 (2280)
Q Consensus 617 ~--~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~h~~gl~ 692 (2280)
. ................++++++|+|||||||.||||+++|++++....... ..+....++++++++|++|..++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 228 (534)
T d1v25a_ 149 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 228 (534)
T ss_dssp TCEEHHHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT
T ss_pred ccccccccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhcccc
Confidence 0 000111112233456788999999999999999999999999987654433 334567899999999999999886
Q ss_pred HHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCC
Q 037878 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVR 772 (2280)
Q Consensus 693 ~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~ 772 (2280)
.. +..+..|+++++..+ ..++..+...+.++++|++.++|.++..+.+...... .++++||.+++||++++
T Consensus 229 ~~-~~~~~~g~~~v~~~~---~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-----~~~~~lr~~~~gG~~~~ 299 (534)
T d1v25a_ 229 LP-YAATLVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-----HRLKTLRRLVVGGSAAP 299 (534)
T ss_dssp HH-HHHHHHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----CCCSSCCEEEECSSCCC
T ss_pred cc-ceeeeecceeeeccc---cccccccchhhhhccccccccCchhhhhhhhhhcccc-----ccccceeEEEEecCCCC
Confidence 54 455556666666554 2388999999999999999999999998887655443 57899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceee-cCCCceeeccccCCCCCceEEEEcCCCCcccCC
Q 037878 773 QTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIIL-DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGE 851 (2280)
Q Consensus 773 ~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~-~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p 851 (2280)
++..+++.+. +.++++.||+||++..++........... ........+++|+|+||++++|+|+++......
T Consensus 300 ~~~~~~~~~~-------~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~ 372 (534)
T d1v25a_ 300 RSLIARFERM-------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 372 (534)
T ss_dssp HHHHHHHHHT-------TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred HHHHHHHHHh-------CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCC
Confidence 9999988764 45799999999999887754322211100 000112357899999999999999887543333
Q ss_pred CCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHH
Q 037878 852 PGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEK 930 (2280)
Q Consensus 852 ~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~ 930 (2280)
.|+.|||+|+|++++.||+|+|+.|++.|.. +|||+|||+|+++ ||.++++||+||+||++|+||+|.|||+
T Consensus 373 ~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~-------dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~ 445 (534)
T d1v25a_ 373 GKALGEVQLKGPWITGGYYGNEEATRSALTP-------DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 445 (534)
T ss_dssp SCCCEEEEEESTTSBSSCBTCHHHHHTTBCT-------TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHC
T ss_pred CCeeEEEEEcCCcccceecCChhhhhhhccc-------CCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHH
Confidence 4789999999999999999999999988854 5899999999997 9999999999999999999999999999
Q ss_pred HHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHH-HHHHHHHhcCcceeEEEEec
Q 037878 931 TVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIEN-IKTRVVEEHGVTVASVKLIK 1009 (2280)
Q Consensus 931 ~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~-l~~~l~~~~~~~~~~~~lv~ 1009 (2280)
+|.+||+|.+ |+|++++++..+ ..+.++++ ...+....+++++. +++.|+. +++|.. ++.
T Consensus 446 ~l~~~~~V~~---a~v~~~~~~~~~----------~~l~a~vv--~~~~~~~~~~~~~~~~~~~l~~-~~~P~~---i~~ 506 (534)
T d1v25a_ 446 ALMGHPKVKE---AAVVAIPHPKWQ----------ERPLAVVV--PRGEKPTPEELNEHLLKAGFAK-WQLPDA---YVF 506 (534)
T ss_dssp C-------------CEEEEECSSSS----------EEEEECC---------------------CCCT-TTSCSB---C--
T ss_pred HHHhCCCcce---EEEEEEECCCCC----------eEEEEEEE--eCCCCCCHHHHHHHHHHhcCCc-CCCccE---EEE
Confidence 9999999976 888888765432 12222222 22222233344444 3444433 455443 344
Q ss_pred CCCccCCCCcccchHHHHHHhhc
Q 037878 1010 PRTMSKTTSGKIKRFECLKQFVD 1032 (2280)
Q Consensus 1010 ~~~lP~t~sGKvdR~~L~~~~~~ 1032 (2280)
+++||+|+||||||++|+++|.+
T Consensus 507 ~~~lP~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 507 AEEIPRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp ------------CCTTHHHHSTT
T ss_pred ECCCCCCCCccccHHHHHHHHHh
Confidence 58999999999999999998754
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.7e-57 Score=609.52 Aligned_cols=500 Identities=17% Similarity=0.216 Sum_probs=369.1
Q ss_pred CCHHHHHHhhccccc-cCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHH
Q 037878 469 SSLDGYLKHWGTHRI-TQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAF 547 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~-~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~ 547 (2280)
.++.+++.+++++.+ .|+++|+... ... +++||+||.++++++|+.|+++ |+++||+|+++++|++++++++
T Consensus 17 ~t~~~~l~~~~~~~~~~P~~~a~~d~--~~~--~~lTy~el~~~~~~lA~~L~~~---Gi~~Gd~Vai~~~ns~e~~v~~ 89 (541)
T d1lcia_ 17 GTAGEQLHKAMKRYALVPGTIAFTDA--HIE--VNITYAEYFEMSVRLAEAMKRY---GLNTNHRIVVCSENSLQFFMPV 89 (541)
T ss_dssp SCHHHHHHHHHHHHHTSTTCEEEEET--TTC--CEEEHHHHHHHHHHHHHHHHHH---TCCTTCEEEEECSSCSSTHHHH
T ss_pred CCHHHHHHHHHHhhCCCCCeEEEEeC--CCC--eEeeHHHHHHHHHHHHHHHHHc---CcCCCCEEEEEeCCCHHHHHHH
Confidence 478888877765431 2567776532 221 5799999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC--CCCCCCcccc----------cccc
Q 037878 548 FGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG--SWPNLPWLHT----------DSWV 615 (2280)
Q Consensus 548 LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~~~~~~~~----------~~~~ 615 (2280)
|||+++|+++||+++.++.++ +.+++++++++.+|++.+..+.+... ..+....+.. ..+.
T Consensus 90 lA~~~~G~i~vpl~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (541)
T d1lcia_ 90 LGALFIGVAVAPANDIYNERE-------LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMY 162 (541)
T ss_dssp HHHHHHTCEEEECCTTCCHHH-------HHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHH
T ss_pred HHHHHhCeEEEecCCCCCHHH-------HHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhh
Confidence 999999999999999999887 88999999999999987654322110 0111111100 0000
Q ss_pred cccc-----ccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHc---CCCCCcEEEEEcCchh
Q 037878 616 KNSK-----NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY---KSTSKTVLVSWLPQYH 687 (2280)
Q Consensus 616 ~~~~-----~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~h 687 (2280)
.... ........+.....++++|||+|||||||.||||+++|++++.......... ...+++++++++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 242 (541)
T d1lcia_ 163 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242 (541)
T ss_dssp HHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred hhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccc
Confidence 0000 0001111123345678999999999999999999999999988777665443 4678999999999999
Q ss_pred hhhHHHHHHHHHHccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEe
Q 037878 688 DMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVA 767 (2280)
Q Consensus 688 ~~gl~~~i~~~L~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~g 767 (2280)
..++.. .+..+..|+..+... ..++......+.++++|.+..+|..+..+....... ..+++++|.+++|
T Consensus 243 ~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-----~~~~~~l~~v~~g 312 (541)
T d1lcia_ 243 GFGMFT-TLGYLICGFRVVLMY----RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID-----KYDLSNLHEIASG 312 (541)
T ss_dssp HHHHHH-HHHHHHHTCEEEECS----SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG-----GSCCTTCCEEECT
T ss_pred cccccc-ccccccccccccccc----ccccchhHHHHhhhhccccccCcccccccccccccc-----ccccccceEEEec
Confidence 998754 455555666655543 237788889999999999999999888876543322 3568899999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCc
Q 037878 768 AEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSE 847 (2280)
Q Consensus 768 Ge~l~~~l~~~~~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~ 847 (2280)
|++++++..+++.+.+. ...+.++||+||++..++..... ....+++|+|+||++++|+|+|++.
T Consensus 313 G~~~~~~~~~~~~~~~~-----~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~svG~p~~~~~~~i~d~d~~~ 377 (541)
T d1lcia_ 313 GAPLSKEVGEAVAKRFH-----LPGIRQGYGLTETTSAILITPEG----------DDKPGAVGKVVPFFEAKVVDLDTGK 377 (541)
T ss_dssp TCCCCHHHHHHHHHHTT-----CSCCBCEECCGGGSSCSEECCCC-------------CCCCBEECTTCEEEEECTTTCC
T ss_pred ccccccccccccccccC-----CceeeecCCccccCceEEecCcc----------cCCCCccccccCCCEEEEEECCCCc
Confidence 99999999999998863 45689999999999877654321 2235789999999999999988664
Q ss_pred ccCCCCCeeEEEEcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechH
Q 037878 848 EIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSA 926 (2280)
Q Consensus 848 ~~~p~G~~GEL~i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~ 926 (2280)
.++.|++|||+|+|++++.||+++++.+...|.. ++||+|||+|+++ ||.++++||+||+||++|+||+|.
T Consensus 378 -~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~-------~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~ 449 (541)
T d1lcia_ 378 -TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDK-------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA 449 (541)
T ss_dssp -BCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCT-------TSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHH
T ss_pred -CCCCCCeEEEEEccCccCCeeCCChhhhhhcccC-------CccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHH
Confidence 4579999999999999999999999988877653 5899999999997 999999999999999999999999
Q ss_pred HHHHHHHhccCCcCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHHHHHHhcCcceeEE
Q 037878 927 DVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKTRVVEEHGVTVASV 1005 (2280)
Q Consensus 927 EIE~~L~~~p~v~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~ 1005 (2280)
|||++|.+||+|.+ |+|++++++..+ +.+ +++++..++...+ +++.+.+++++.+.+++|...+
T Consensus 450 ~IE~~l~~~p~V~~---~~v~~~~~~~~g----------~~~--~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~ 514 (541)
T d1lcia_ 450 ELESILLQHPNIFD---AGVAGLPDDDAG----------ELP--AAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVV 514 (541)
T ss_dssp HHHHHHHTSTTEEE---EEEEEEEETTTE----------EEE--EEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEE
T ss_pred HHHHHHHhCCCccE---EEEEEEECCCCC----------EEE--EEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEE
Confidence 99999999999975 889988775432 122 2233334444333 6788888888877666664333
Q ss_pred EEecCCCccCCCCcccchHHHHHHhhcC
Q 037878 1006 KLIKPRTMSKTTSGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1006 ~lv~~~~lP~t~sGKvdR~~L~~~~~~~ 1033 (2280)
.+++||+|++|||||++|++++.++
T Consensus 515 ---~v~~lP~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 515 ---FVDEVPKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp ---EESSCCC-----CCHHHHHHHHHHH
T ss_pred ---EeCCCCcCCCcCccHHHHHHHHHHh
Confidence 3489999999999999999998653
|
| >d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein, N-terminal domain {Black sea rod (Plexaura homomalla) [TaxId: 47982]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Allene oxide synthase domain: Allene oxide synthase-lipoxygenase protein, N-terminal domain species: Black sea rod (Plexaura homomalla) [TaxId: 47982]
Probab=100.00 E-value=8.7e-59 Score=567.71 Aligned_cols=303 Identities=27% Similarity=0.417 Sum_probs=265.2
Q ss_pred heecccccccccccceeEEEEecCCCCCCcCcccCCCceeeEEEEecCCCCCCCcccccccccEEEeeccCCCCCCccee
Q 037878 1710 LKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSADDDARIDARGAAIRIFSDLNGNTSSLLD 1789 (2280)
Q Consensus 1710 ~~~~~R~~Hakg~~~~G~f~v~~~~~~~~~~~~f~~g~~~p~~~RfS~~~~~~~D~~~~~rG~Aik~~~~~~~~~~~~~D 1789 (2280)
.++++|.+||||+||+|+|+|++| ++++++++|++|++|||++||||+.|. +|+.+|+|||||||++. +| .++||
T Consensus 57 ~~~~~R~~HakG~ga~G~f~v~~d-~~~~~~~~f~~G~~~Pv~vRfS~~~G~-~D~~~d~RG~AiKf~~~-~g--e~~~D 131 (366)
T d1u5ua_ 57 LKGFRRATHTVGTGGIGEITIVND-PKFPEHEFFTAGRTFPARLRHANLKYP-DDAGADARSFSIKFADS-DS--DGPLD 131 (366)
T ss_dssp HTTTSCSSSCSEEEEEEEEEECSS-CCSCCCSSSCTTCEEEEEEEEEBSSCS-CTTSEECBEEEEESSSS-SS--CCSCE
T ss_pred ccCCcccccCCccceEEEEEEeCC-chhhhHHhcCCCCeeEEEEEecCCCCC-ccccCCCCeeEEEEecC-CC--CceeE
Confidence 467899999999999999999999 479999999999999999999998774 69999999999999854 11 25699
Q ss_pred eecccccccccCChhhHHHHHhhccchh-hhhhccCcchhh-hhhhcccCCCccccceeeeeeeEEEEEeCCcEEEEEEE
Q 037878 1790 LTLKTGNAFYARTIGDFATWLVCGLAAR-EEHVKRVPHIRD-AVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFK 1867 (2280)
Q Consensus 1790 ~~~~n~p~f~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~p~s~~~~~y~s~~~~~~~~~~g~~~~vk~~ 1867 (2280)
|||||+|+||++|+++|++|+++.++++ ..++..+|.... .++..+++|+||++++|||+|||+|+|++|+.+|||||
T Consensus 132 ~v~~n~pvF~~rd~~~F~~~~~a~k~~p~~~f~~~~Pe~~~~~~~~~r~~P~s~~~~~y~s~~tf~fvn~~G~~~yvK~~ 211 (366)
T d1u5ua_ 132 IVMNTGEANIFWNSPSLEDFVPVEEGDAAEEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYR 211 (366)
T ss_dssp EEEEESSSCSCCSHHHHHHHTTCCTTHHHHHHHTTCHHHHHHHHHHCEESCSCGGGCCEECCSCEEEECTTCCEEEEEEE
T ss_pred EeecCCCccccCCHHHhHHHHhhcCCchHHHHHHcCHHHHHHHHHhcCCCCCCcccCceeccccEEEEcCCCCEEEEEEE
Confidence 9999999999999999999999999877 466788885543 34556689999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCCCCceEEEEEEEeeCCCccccccccccCC
Q 037878 1868 LRPYDESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCT 1947 (2280)
Q Consensus 1868 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~l~vQ~~~~~d~~~~~~~~~D~t 1947 (2280)
++|.++..+.+.++..............++.+.+.+++|||++||.++|+++ +++|+|+||++++.|.++ ++++|+|
T Consensus 212 ~~P~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~d~Lr~dl~~~l~~g-~~~~~l~vQl~~~~d~d~--~~i~D~T 288 (366)
T d1u5ua_ 212 ALPGDVDIKEEDESGRLTEEEQRKIWIFSRHENEKRPDDYLRKEYVERLQKG-PVNYRLQIQIHEASPDDT--ATIFHAG 288 (366)
T ss_dssp EEESSSCCCGGGCTTCCCHHHHTTTTCCSCCTTCCSCTTHHHHHHHHHHHHS-CEEEEEEEEEEECCTTCC--GGGGCTT
T ss_pred EEecCCCcccchhhhhcCchhhhhhhcccccccccCccCHHHHHHHHHHhCC-CceEEEEEEecccccCCC--CCCCCCc
Confidence 9999888777665433222222233455667788899999999999999996 599999999999766544 4577999
Q ss_pred CCCCCCCCCceeeEEEEecCCCChhhhccccccCCcCCCccccccCCCcccccccccchhhHHHhhhHhhcCC
Q 037878 1948 KPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGE 2020 (2280)
Q Consensus 1948 ~~W~~~~~p~~~vg~l~i~~~~~~~~~e~l~F~P~~~~~g~~~~~~~~~~~~d~i~~~R~~~Y~~s~~~R~~~ 2020 (2280)
|+|||+++|+++||+|+||++++++++||++|||||+++||+.+++++++||+|||++|+.+|++|+++|+..
T Consensus 289 k~Wpe~~~P~~~vG~ltl~~~~~~~e~EqlaF~P~~~~pgi~~~~~~~~~d~~si~~~R~~vY~~s~~~R~~~ 361 (366)
T d1u5ua_ 289 ILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLRKLK 361 (366)
T ss_dssp SCCCTTTSCCEEEEEEEEEEECCHHHHHHCCCCTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcccCccEEEEEEEECCCCChhHhHhhccCCcccCCCcCCCCcccccccccHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999743
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1e-55 Score=588.19 Aligned_cols=492 Identities=19% Similarity=0.225 Sum_probs=384.8
Q ss_pred CCCCCCCCCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCH
Q 037878 462 GVEFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGL 541 (2280)
Q Consensus 462 ~~~~~~~~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~ 541 (2280)
..++|+..||.++++++|++. ||++|+++.+ +++||+||+++++++|+.|+++ |+++||+|+++++|+.
T Consensus 16 ~~~~~~~~tl~~l~~~~a~~~--Pd~~Al~~~~------~~~Ty~eL~~~v~~lA~~L~~~---Gv~~gd~Vai~~~n~~ 84 (514)
T d1amua_ 16 KAEYPRDKTIHQLFEEQVSKR--PNNVAIVCEN------EQLTYHELNVKANQLARIFIEK---GIGKDTLVGIMMEKSI 84 (514)
T ss_dssp CCCCCTTCCHHHHHHHHHHHC--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSSH
T ss_pred CCCCCCCCcHHHHHHHHHHhC--CCCeEEEECC------eeEcHHHHHHHHHHHHHHHHHc---CcCCcCEEEEEeCCCH
Confidence 345888999999999999874 9999998642 5899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccCCCCCCCcccccccccccccc
Q 037878 542 DFVDAFFGCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNL 621 (2280)
Q Consensus 542 e~~va~LA~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (2280)
++++++|||+++|++++|+++..+.++ +.++++++++++++++......+.... ........... ...
T Consensus 85 ~~v~~~la~~~~G~v~v~l~~~~~~~~-------l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~----~~~ 152 (514)
T d1amua_ 85 DLFIGILAVLKAGGAYVPIDIEYPKER-------IQYILDDSQARMLLTQKHLVHLIHNIQ-FNGQVEIFEED----TIK 152 (514)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHH-------HHHHHHHHTCSEEEECGGGHHHHTTSC-CCSEEEECCCS----TTT
T ss_pred HHHHHHHHHHHhCcEEEEeCCCCCHHH-------HHHHHhccCCcEEEEehhhhhhhhhhc-ccccccccccc----ccc
Confidence 999999999999999999999999887 889999999999999877655443221 11111111100 011
Q ss_pred ccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHHHc
Q 037878 622 LAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVG 701 (2280)
Q Consensus 622 ~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L~~ 701 (2280)
.........+..++|+|+|+|||||||.||+|++||+++..........+....++++++++|++|..++. .++.++..
T Consensus 153 ~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~ 231 (514)
T d1amua_ 153 IREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLT 231 (514)
T ss_dssp TSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTT
T ss_pred ccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccc-cccccccc
Confidence 11111223345689999999999999999999999999999999999999999999999999999999975 56777778
Q ss_pred cceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHH
Q 037878 702 GSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVE 781 (2280)
Q Consensus 702 G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~ 781 (2280)
|+++++..+.. ..+...+++.+..+.++.+..+|..... ....+++++|.+++||+++++++.+++.+
T Consensus 232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~ 299 (514)
T d1amua_ 232 GASLYIILKDT-INDFVKFEQYINQKEITVITLPPTYVVH-----------LDPERILSIQTLITAGSATSPSLVNKWKE 299 (514)
T ss_dssp TCEEEECCHHH-HTCHHHHHHHHHHTTCCEEEECHHHHTT-----------SCTTTCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred ccccccccccc-ccchhhhhhhhhhhhcccccceeeeccc-----------ccccccccccEEEEecccCCHHHhhhhcc
Confidence 88887765433 4477788999999999999888865332 12356889999999999999999887754
Q ss_pred HhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEc
Q 037878 782 LTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS 861 (2280)
Q Consensus 782 ~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~ 861 (2280)
+..+++.||+||++.+++........ ....++.|.+.++..+.+.|+++ ..++.|+.|||+|+
T Consensus 300 --------~~~~~~~yG~tE~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~d~~~--~~~~~g~~GEl~v~ 362 (514)
T d1amua_ 300 --------KVTYINAYGPTETTICATTWVATKET-------IGHSVPIGAPIQNTQIYIVDENL--QLKSVGEAGELCIG 362 (514)
T ss_dssp --------TSEEEEEECCGGGSSCSEEEECCSSC-------CCSSCCCBEECTTEEEEEECTTS--CBCCTTCEEEEEEE
T ss_pred --------ceeEEEeeccccCceeeeeccccccc-------cCcccccccceeeeeEeeecccc--eecCCCCeeEEEEc
Confidence 45799999999999887655432211 11234567888999999999775 45679999999999
Q ss_pred CCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcC
Q 037878 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIR 940 (2280)
Q Consensus 862 Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~ 940 (2280)
||.+++||+++|+.+.++|..++. .++++||+|||+|+++ ||+|+|+||+||+||++|++|+|.|||++|.+||+|.+
T Consensus 363 ~~~~~~gY~~~~~~~~~~~~~~~~-~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~ 441 (514)
T d1amua_ 363 GEGLARGYWKRPELTSQKFVDNPF-VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 441 (514)
T ss_dssp ETTCCCEETTCHHHHHHHEEECSS-STTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred cCcccccccccccccceeeEeccc-cCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccE
Confidence 999999999999999999976432 3567999999999997 99999999999999999999999999999999999975
Q ss_pred CceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhcCcceeEEEEecCCCccCCCCcc
Q 037878 941 PGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020 (2280)
Q Consensus 941 ~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~lv~~~~lP~t~sGK 1020 (2280)
|+|++.+++..+ ..+++++...++ ...+++++.++++|+. +++| ..++.+++||+|++||
T Consensus 442 ---~~V~~~~~~~~g------------~~~~a~v~~~~~-~~~~~l~~~~~~~l~~-~~~p---~~i~~v~~lP~t~~GK 501 (514)
T d1amua_ 442 ---TAVSVHKDHQEQ------------PYLCAYFVSEKH-IPLEQLRQFSSEELPT-YMIP---SYFIQLDKMPLTSNGK 501 (514)
T ss_dssp ---EEEEEEECTTSC------------EEEEEEEEESSC-CCHHHHHHHHHHHSCG-GGSC---SEEEECSSCCBCTTSS
T ss_pred ---EEEEEEECCCCC------------EEEEEEEEcCCC-CCHHHHHHHHHhhCCc-ccCc---eEEEEeCCCCCCCCcC
Confidence 888988765322 122233333333 2335666777666654 4444 3455569999999999
Q ss_pred cchHHHH
Q 037878 1021 IKRFECL 1027 (2280)
Q Consensus 1021 vdR~~L~ 1027 (2280)
|+|++|+
T Consensus 502 i~R~~L~ 508 (514)
T d1amua_ 502 IDRKQLP 508 (514)
T ss_dssp BCGGGSC
T ss_pred hhHHhcC
Confidence 9998643
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.7e-54 Score=577.67 Aligned_cols=497 Identities=21% Similarity=0.257 Sum_probs=382.9
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.|+.++|+++|++. ||++|+.+.+ +++||+||+++++++|+.|+++ |+++||+|+++++|++++++++|
T Consensus 25 ~tl~~~l~~~a~~~--pd~~Al~~~~------~~~Ty~el~~~v~~~A~~L~~~---Gv~~gd~V~i~~~n~~~~~v~~l 93 (536)
T d1mdba_ 25 ETFGDLLRDRAAKY--GDRIAITCGN------THWSYRELDTRADRLAAGFQKL---GIQQKDRVVVQLPNIKEFFEVIF 93 (536)
T ss_dssp CCHHHHHHHHHHHH--TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHH---TCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHC--CCCeEEEECC------EeEcHHHHHHHHHHHHHHHHHc---CcCCcCEEEEEeCCCHHHHHHHH
Confidence 58999999999874 8999998632 5899999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhccC-------CCCCCCccccccccc--ccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVG-------SWPNLPWLHTDSWVK--NSK 619 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~ 619 (2280)
||+++|+++||+++..+.++ +.+++++++++.++++.......... ..+............ ...
T Consensus 94 A~~~~G~i~vpl~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (536)
T d1mdba_ 94 ALFRLGALPVFALPSHRSSE-------ITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPL 166 (536)
T ss_dssp HHHHHTCEEEECCTTCCHHH-------HHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEG
T ss_pred HHHHhCcEEEecCCCCCHHH-------HHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccch
Confidence 99999999999999999888 88999999999999875433211000 001111000000000 001
Q ss_pred ccccccccccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCcEEEEEcCchhhhhHHHHHHHHH
Q 037878 620 NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAM 699 (2280)
Q Consensus 620 ~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~i~~~L 699 (2280)
...........+..++|+++|+|||||||.||||++||+++.+.+......++..+++++++++|++|.+++...++..+
T Consensus 167 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~ 246 (536)
T d1mdba_ 167 EDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV 246 (536)
T ss_dssp GGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHH
T ss_pred hhcccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccc
Confidence 11112222344567899999999999999999999999999999999999999999999999999999999865555555
Q ss_pred HccceEEEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHH
Q 037878 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF 779 (2280)
Q Consensus 700 ~~G~~~vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~ 779 (2280)
..++..++..+ ..++..+...+++++++.+..+|..+..+........ .+++++|.+++||+++++++.+++
T Consensus 247 ~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~gG~~~~~~~~~~~ 318 (536)
T d1mdba_ 247 LYAGGRVVLSP---SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-----DDLSSLQVLQVGGAKFSAEAARRV 318 (536)
T ss_dssp HHTTCEEEECS---SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-----CCCTTCCEEEEESSCCCHHHHTTH
T ss_pred ccccccccccC---CCCHHHHHHHHhhhccccccccchhhhhhhhhccccc-----cccCcceeEEEeccccccccccch
Confidence 55444444443 2389999999999999999999998888776655443 457899999999999999999999
Q ss_pred HHHhcCCCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEE
Q 037878 780 VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859 (2280)
Q Consensus 780 ~~~~~~~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~ 859 (2280)
.+.+ +......||.+|.+..++..... .....+++|.|+++....+++.+.+ ..++.|+.|||+
T Consensus 319 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~p~~~~~~~~v~~~~g-~~~~~~~~Gel~ 382 (536)
T d1mdba_ 319 KAVF------GCTLQQVFGMAEGLVNYTRLDDP---------EEIIVNTQGKPMSPYDESRVWDDHD-RDVKPGETGHLL 382 (536)
T ss_dssp HHHT------CSEEEEEEECTTSCEEECCTTSC---------HHHHHHCCCEESSTTCEEEEECTTS-CBCCTTCCEEEE
T ss_pred hhcc------Cceeeeccccccccccccccccc---------cccccCCcccCCCCcceEEEEcCCC-Ceecccccceee
Confidence 9875 45678888888877655433211 1223467888886555555444444 345799999999
Q ss_pred EcCCCcccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCC
Q 037878 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEH 938 (2280)
Q Consensus 860 i~Gp~v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v 938 (2280)
++|+.+++||+++++.+...+.. ++||+|||+++++ ||.|+|+||+||+||++|+||+|.|||++|.+||+|
T Consensus 383 v~g~~~~~gY~~~~~~~~~~~~~-------~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V 455 (536)
T d1mdba_ 383 TRGPYTIRGYYKAEEHNAASFTE-------DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAV 455 (536)
T ss_dssp EECTTSCSSCTTCHHHHHHHBCT-------TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTE
T ss_pred cCCCccccccccccccccccccc-------cCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCc
Confidence 99999999999999988887754 5899999999997 999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccccccccccccccCCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhcCcceeEEEEecCCCccCCC
Q 037878 939 IRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTR-VVEEHGVTVASVKLIKPRTMSKTT 1017 (2280)
Q Consensus 939 ~~~~~aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~~~~~lv~~~~lP~t~ 1017 (2280)
.+ |+|++.+++..+ + ..++++...++....+++++.++++ |+ .+++| ..++.+++||+|+
T Consensus 456 ~~---a~vvg~~~~~~g----------~--~~~a~v~~~~~~~~~~~l~~~l~~~~l~-~~~~P---~~i~~v~~lP~t~ 516 (536)
T d1mdba_ 456 HD---AAMVSMPDQFLG----------E--RSCVFIIPRDEAPKAAELKAFLRERGLA-AYKIP---DRVEFVESFPQTG 516 (536)
T ss_dssp EE---EEEEEEEETTTE----------E--EEEEEEEESSSCCCHHHHHHHHHHTTCC-GGGSC---SEEEECSSCCBCT
T ss_pred cE---EEEEEEEcCCCC----------e--EEEEEEEECCCCCCHHHHHHHHHhcCCC-cCcCc---cEEEEECCCCcCC
Confidence 75 888887765322 1 1223333444444446677777664 33 24444 3445569999999
Q ss_pred CcccchHHHHHHhhcC
Q 037878 1018 SGKIKRFECLKQFVDG 1033 (2280)
Q Consensus 1018 sGKvdR~~L~~~~~~~ 1033 (2280)
||||||++|++++.++
T Consensus 517 ~GKi~r~~L~~~~~~~ 532 (536)
T d1mdba_ 517 VGKVSKKALREAISEK 532 (536)
T ss_dssp TSCBCHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHH
Confidence 9999999999998653
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=6.9e-51 Score=539.36 Aligned_cols=494 Identities=18% Similarity=0.237 Sum_probs=374.1
Q ss_pred CCHHHHHHhhccccccCCceEEEEEcCCCceeeeccHHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCHhHHHHHH
Q 037878 469 SSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFF 548 (2280)
Q Consensus 469 ~tl~~~l~~~a~~~~~~d~~A~~~~~~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~Gv~~Gd~V~i~~~~s~e~~va~L 548 (2280)
.|++++|+++|++. ||++|+.+.+. + +++||+||.++++++|++|++. |+++||+|+++++|++++++++|
T Consensus 2 ~ti~~~l~~~a~~~--pd~~al~~~~~-~---~~~Ty~el~~~~~~~a~~L~~~---Gv~~gd~V~i~~~n~~~~~~~~l 72 (503)
T d3cw9a1 2 QTVNEMLRRAATRA--PDHCALAVPAR-G---LRLTHAELRARVEAVAARLHAD---GLRPQQRVAVVAPNSADVVIAIL 72 (503)
T ss_dssp CCHHHHHHHHHHHS--TTSEEEEEGGG-T---EEEEHHHHHHHHHHHHHHHHHT---TCCTTCEEEEECCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhC--CCCeEEEECCC-C---cEEeHHHHHHHHHHHHHHHHHc---CcCCCCEEEEEeCCCHHHHHHHH
Confidence 58999999999874 89999987543 2 5899999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCeEEeCCCCCccccchhhHHHHHHHHhhcCCeEEEEccccchhhc-cCCCCCCCcccccccccccccccccccc
Q 037878 549 GCMRAKVLPVPVLPPDPLQRGGQALLKIENISKSCGAVAILSTIGYHSAVR-VGSWPNLPWLHTDSWVKNSKNLLAENVV 627 (2280)
Q Consensus 549 A~l~aGa~~vpld~~~p~~r~~~~l~~l~~il~~~~~~~vl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (2280)
||+++|++++|+++..+.++ ++++++++++++++++........ .........+...+..............
T Consensus 73 A~~~~G~v~vpi~~~~~~~~-------i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 145 (503)
T d3cw9a1 73 ALHRLGAVPALLNPRLKSAE-------LAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPI 145 (503)
T ss_dssp HHHHHTCEEEEECTTSCHHH-------HHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETTEECCCSCCC
T ss_pred HHHHhCcEEEEeCCCCCHHH-------HHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhhhcccccCCcc
Confidence 99999999999999999888 889999999999998765321111 0011122222222221111111112222
Q ss_pred ccCCCCCCCeEEEEeccCCCCCceEEEEchHHHHHHHHHHHHHcC--CCCCcEEEEEcCchhhhhHHHHHHHHHHccceE
Q 037878 628 CFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYK--STSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTA 705 (2280)
Q Consensus 628 ~~~~~~~~d~a~IiyTSGSTG~PKgV~~tH~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~gl~~~i~~~L~~G~~~ 705 (2280)
.....+++++++|+|||||||.||+|+++|+++..++......+. ....+++++++|+.|..+.....+.+...++++
T Consensus 146 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (503)
T d3cw9a1 146 EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (503)
T ss_dssp CCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEE
T ss_pred ccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccc
Confidence 334567899999999999999999999999999999888776654 356689999999999998877778888888888
Q ss_pred EEeCccccccCHHHHHHHHhhcceeeecCcHHHHHHHHHHHhcccccccccCCCCccEEEEecCCCCHHHHHHHHHHhcC
Q 037878 706 ILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRP 785 (2280)
Q Consensus 706 vl~~~~~~~~~p~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~Lr~l~~gGe~l~~~l~~~~~~~~~~ 785 (2280)
++.++ .+|..+...+.++++++...+|..+..+........ ...++++||.+++|||+++++...++...+
T Consensus 226 ~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-- 296 (503)
T d3cw9a1 226 VVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---SSLKLDSLRHVTFAGATMPDAVLETVHQHL-- 296 (503)
T ss_dssp EECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC---TTCCCTTCCEEEECSSCCCHHHHHHHHHHC--
T ss_pred ccccc----cChHHhhhhhhhceeecccccccccccccccccccc---ccccccceEEEEeccccccccccccccccc--
Confidence 87653 289999999999999999999998887765544333 225678999999999999999999988874
Q ss_pred CCCCCcccccccCccccccceecccCCCCceeecCCCceeeccccCCCCCceEEEEcCCCCcccCCCCCeeEEEEcC-CC
Q 037878 786 FGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS-PS 864 (2280)
Q Consensus 786 ~g~~~~~v~n~YG~TE~~~~~~~~~~~~~~~~~~~~g~~~~g~vG~p~pg~~v~Ivd~~~~~~~~p~G~~GEL~i~G-p~ 864 (2280)
+..+.+.||.||++..++........ ....+.+.+.....+.+.. + +.++.|+.||+++.+ +.
T Consensus 297 ----~~~~~~~yg~~e~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~g~~~~~~~~~ 360 (503)
T d3cw9a1 297 ----PGEKVNIYGTTEAMNSLYMRQPKTGT----------EMAPGFFSEVRIVRIGGGV-D-EIVANGEEGELIVAASDS 360 (503)
T ss_dssp ----CSEEEEEEEETTTEEEEEEESCSSSS----------EEBCCTTCCEEEECTTSCT-T-CBCCTTCCEEEEEECCTT
T ss_pred ----cccccccccccccceeeeeccccccc----------cccccccccceeeeeeccc-C-cccCCCcccccccccccc
Confidence 45789999999998776654332211 1122233333444333433 2 455799999887765 45
Q ss_pred cccccCCCchhhHHHHhhhccCCCCCceeecCcEEEEE-CCeEEEEecCCCeEEECCeeechHHHHHHHHhccCCcCCce
Q 037878 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGC 943 (2280)
Q Consensus 865 v~~GY~~~p~~t~~~f~~~~~~~~~~~~yrTGDlgr~~-dG~l~~~GR~dd~IKi~G~rI~~~EIE~~L~~~p~v~~~~~ 943 (2280)
...||+++++.|+++|. +|||+|||+|+++ ||.|+++||+||+||++|+||+|.|||++|.+||+|.+
T Consensus 361 ~~~~~~~~~~~t~~~~~--------~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~--- 429 (503)
T d3cw9a1 361 AFVGYLNQPQATAEKLQ--------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTE--- 429 (503)
T ss_dssp SCCCBTTCHHHHHHHEE--------TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEE---
T ss_pred ccccccCChhhhHHHhc--------CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccE---
Confidence 67789999999999884 3899999999997 99999999999999999999999999999999999975
Q ss_pred eEEEeccccccccccccccCCCCceEEEEEEEecCCCCCC-HHHHHHHHH-HHHHhcCcceeEEEEecCCCccCCCCccc
Q 037878 944 CAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD-KDVIENIKT-RVVEEHGVTVASVKLIKPRTMSKTTSGKI 1021 (2280)
Q Consensus 944 aaVv~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~-~~l~~~l~~-~l~~~~~~~~~~~~lv~~~~lP~t~sGKv 1021 (2280)
|+|++.+++..+ +. +++++...++...+ +++.+.+++ +|+ .+++| ..++.+++||+|+||||
T Consensus 430 ~~v~~~~~~~~g----------~~--~~a~v~~~~~~~~~~~~l~~~~~~~~l~-~~~~P---~~i~~v~~~P~t~~GKi 493 (503)
T d3cw9a1 430 VVVIGLADQRWG----------QS--VTACVVPRLGETLSADALDTFCRSSELA-DFKRP---KRYFILDQLPKNALNKV 493 (503)
T ss_dssp EEEEEEEETTTE----------EE--EEEEEEECTTCCCCHHHHHHHHHHSSSC-GGGSC---SEEEECSCCCBCTTSCB
T ss_pred EEEEEEECCCCC----------eE--EEEEEEeCCCCCCCHHHHHHHHHhcCCC-CCCCc---cEEEEECCCCcCCCcCc
Confidence 889988775432 11 22223334444333 455555543 232 24444 34555689999999999
Q ss_pred chHHHHHHh
Q 037878 1022 KRFECLKQF 1030 (2280)
Q Consensus 1022 dR~~L~~~~ 1030 (2280)
||++|++++
T Consensus 494 ~R~~L~~~~ 502 (503)
T d3cw9a1 494 LRRQLVQQV 502 (503)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHhc
Confidence 999999875
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.76 E-value=5.7e-18 Score=198.50 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=50.7
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCce
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
..++++||++|+||.++.+.++++||++|+||++|+|++| +|++++|.|+||..
T Consensus 141 i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~Vtkd--vp~~~~~~G~PA~~ 194 (262)
T d2jf2a1 141 LAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQGNHATP 194 (262)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEEBTEEE
T ss_pred cccceeeCceEEeccCceeccccEeehhceeeccceEeec--CCcccccCCCCcee
Confidence 4477999999999999999999999999999999999999 99999999999743
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.73 E-value=1.6e-17 Score=195.16 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=76.3
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||+++.|... ....+.+.||+++.++.++.+ .++++||++||||.++.|++|++||++|+||++|
T Consensus 104 t~iG~~~~i~~~--~~i~~~~~ig~~~~i~~~~~i-----------~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagS 170 (259)
T d1j2za_ 104 TLIGDKNLLMAY--VHVAHDCVIGSHCILANGVTL-----------AGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKS 170 (259)
T ss_dssp EEECSSCEECTT--CEECTTCEECSSCEECTTCEE-----------CTTCEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred ccccCceEEecc--ccccceecccceeeeeccccc-----------cccccccccceecceeeeecccEeccceeeeeee
Confidence 456777776665 222333444444444444444 3789999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCcee------eecccchhhHHHHHhHHHHHHHH
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVM------IKNTMHALDDRIEEMDMKYKKIV 1698 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~------~~~~~~~~~~~le~~~p~~~~~v 1698 (2280)
+|++| +|+++++.|+||... +||. ...+++..+...|+++.
T Consensus 171 vV~kd--Vp~~~i~~G~PA~~~g~n~~~lr~~--~~~~~~~~~~~~~~~l~ 217 (259)
T d1j2za_ 171 ALGKD--VPPYCTVEGNRAFIRGLNRHRMRQL--LESKDIDFIYALYKRLF 217 (259)
T ss_dssp EECSB--BCTTEEEETTBTEEEEECHHHHHHH--SCHHHHHHHHHHHHHHT
T ss_pred eeccc--cccceeEEecccccccchhhhhccc--cchHHHHHHHHHHHHHH
Confidence 99999 999999999997432 2332 22334555555666554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.69 E-value=1.6e-16 Score=197.42 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=78.7
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTS 257 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~ 257 (2280)
...+..+.+|+..+++++++..|.+|++|++|++|+.+++++.+.+.+.+|+.++++||+||+|+|+.+++.+.|.|+.+
T Consensus 227 ~~~~~~~~~~~~~l~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~ 306 (370)
T d2iida1 227 EKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLL 306 (370)
T ss_dssp CCCEEEETTCTTHHHHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCC
T ss_pred ccccccchhhHHHHHHHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCC
Confidence 45677899999999999999999999999999999999998877777766655789999999999999999999999998
Q ss_pred hhhHhhhccC
Q 037878 258 KPTESETQVM 267 (2280)
Q Consensus 258 ~~~~~~l~~~ 267 (2280)
+.+...+...
T Consensus 307 ~~~~~ai~~~ 316 (370)
T d2iida1 307 PKKAHALRSV 316 (370)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 8877665443
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6.9e-16 Score=192.91 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=75.4
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcccccccccCCCCC
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTS 257 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~~i~f~p~~~ 257 (2280)
....+.+.+|+..+++++++..|.+|++|++|++|..+++++ .+++.+| ++++||+||+|+|+.+...+.|.|+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v--~v~~~~g--~~~~ad~vI~a~p~~~~~~~~~~p~l~ 274 (383)
T d2v5za1 199 GGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENV--LVETLNH--EMYEAKYVISAIPPTLGMKIHFNPPLP 274 (383)
T ss_dssp STTSEEETTCTHHHHHHHHHHHGGGEEESCCEEEEECSSSSE--EEEETTS--CEEEESEEEECSCGGGGGGSEEESCCC
T ss_pred CcceeeeccchhHHHHHHHHHcCCeEEecCcceEEEecCCeE--EEEECCC--CEEECCEEEECCCHHHHhhCccCCCCC
Confidence 456678999999999999999999999999999999988876 6778889 578999999999999999999999998
Q ss_pred hhhHhhhccC
Q 037878 258 KPTESETQVM 267 (2280)
Q Consensus 258 ~~~~~~l~~~ 267 (2280)
......+...
T Consensus 275 ~~~~~~~~~~ 284 (383)
T d2v5za1 275 MMRNQMITRV 284 (383)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHHHh
Confidence 8877666543
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.59 E-value=6.1e-15 Score=161.86 Aligned_cols=115 Identities=15% Similarity=0.243 Sum_probs=90.7
Q ss_pred eCCCceeccCCcc--cCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1576 IGRYCSIRAINPV--SCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1576 IG~~~~i~~~~~~--~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
||+++.++..+.. ...+.+.||+++.+++.+.+ ++++||++++||.+++|++|++||++|+||++|
T Consensus 54 IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~------------~~~~i~~~~~ig~~~~i~~gv~IG~~~~Igags 121 (172)
T d1xhda_ 54 IGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL------------HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGS 121 (172)
T ss_dssp ECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE------------ESCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred ccceeeeeeeceeccCCcCCeeeeeeeeeeeeecc------------cccccccceEEecccEeeCCcEEcCcccccceE
Confidence 4444444443222 12345888999999888887 788999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCceeeecccchhhHHHHHhHHHHHHHHHhhhh
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEMDMKYKKIVGNLSA 1703 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~le~~~p~~~~~v~~l~~ 1703 (2280)
+|+++..+|++++|.|+| ++.+|+...+..+.+++....|.+..++++.
T Consensus 122 vV~~~~~i~~~~v~~G~P-ak~i~~~~~~~~~~~~~~~~~y~~~~k~y~~ 170 (172)
T d1xhda_ 122 LVSQGKKIPPNTLAFGRP-AKVIRELTAEDRKDMERIRTQYVEKGQYYKS 170 (172)
T ss_dssp EECTTCEECTTEEEEETT-EEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCeEECCCeEEEecC-cEEECCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999877799999999999 5555666666666677778888888776653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=4e-15 Score=176.46 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=46.1
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeec
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIE 67 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~ 67 (2280)
+|.+++||+|||||++||+||++|+++|+ +|+||||++++||+++|...+
T Consensus 1 ~m~~~yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~~~~GG~~~t~~~~ 50 (297)
T d2bcgg1 1 TIDTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVTLS 50 (297)
T ss_dssp CCCCBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHH
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCCCCcceEEeecc
Confidence 47788999999999999999999999998 699999999999999998643
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.56 E-value=1.8e-14 Score=162.40 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCC
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQS 1672 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa 1672 (2280)
..+++++.++.++....+. ....+++.||++||||.++.|++|++||++++||++|+|+|| +|+++++.|+||
T Consensus 118 ~~~~~~~~~~~~~v~~~~~----~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkd--vp~~~i~~G~Pa 190 (196)
T d1g97a1 118 CEVGSNVNFGAGTITVNYD----GKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIAIGRGR 190 (196)
T ss_dssp EEECSSCEECTTCEEECBS----SSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEECCCCC
T ss_pred eeecceeecCCCeEEeecc----eeeeeeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcC--cCCCCEEEecCC
Confidence 4555556666555543222 123478899999999999999999999999999999999999 999999999995
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.54 E-value=7.7e-15 Score=179.14 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=54.9
Q ss_pred CCeEEEEcCCHHHHHHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCcc
Q 037878 178 AGKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFP 245 (2280)
Q Consensus 178 ~~~~~~~~gG~~~l~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~ 245 (2280)
....+.+++|++.+++++++.+|++|++|++|++|+.+++++.+.+.+ +|+.++++||+||+|+|..
T Consensus 211 ~~~~~~~~~g~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~-~~~~~~~~ad~VV~a~p~~ 277 (347)
T d2ivda1 211 SGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEE-HGRRAELSVAQVVLAAPAH 277 (347)
T ss_dssp CCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEE-TTEEEEEECSEEEECSCHH
T ss_pred cCcccccCCchHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEc-CCeEEEEECCEEEECCCHH
Confidence 456678999999999999999999999999999999998888766654 4444679999999996655
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=2.7e-14 Score=156.11 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=89.3
Q ss_pred CCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCC-------CceEeeCeEECCCcEEccCCeeCCCcEeCC
Q 037878 1573 GAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSS-------IGFIFGKVEVQDNSVIGSQSLVLPNSVVSR 1645 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~-------~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~ 1645 (2280)
+.+||++|+|+.++.+.+...++||++|+|+++|.|.++.+.. +....++++||++||||.+++|+||++||+
T Consensus 72 ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~ 151 (182)
T d1ocxa_ 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEECC
Confidence 4689999999988777777789999999999999998765432 233667899999999999999999999999
Q ss_pred CcEEccCccccCCCccCCCcEEecCCCceeeec
Q 037878 1646 DVILGALSVAPMHSVLQRGGIYIGSQSPVMIKN 1678 (2280)
Q Consensus 1646 ~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~ 1678 (2280)
||+||++|+|++| +|+++++.|+|| +.+|+
T Consensus 152 ~~vIgagsvV~kd--vp~~~i~~G~PA-k~ir~ 181 (182)
T d1ocxa_ 152 NVVVASGAVVTKD--VPDNVVVGGNPA-RIIKK 181 (182)
T ss_dssp TCEECTTCEECSC--BCSSEEEETTTT-EEEEE
T ss_pred CCEECCCCEEccC--CCCCeEEEeeCC-EEEee
Confidence 9999999999999 999999999995 44443
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.2e-14 Score=157.78 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=84.0
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccC-------CCceEeeCeEECCCcEEccCCeeCCCcEeCCC
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYS-------SIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRD 1646 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~-------~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~ 1646 (2280)
++||++|+|+.++.+.+...++|||+|.|+++|.|.++... .+....++++||++||||.+++|+||++||+|
T Consensus 75 v~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~ 154 (200)
T d1krra_ 75 IHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDN 154 (200)
T ss_dssp EEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTT
T ss_pred cEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCCC
Confidence 47777777777666666677888888888888888654332 12236688999999999999999999999999
Q ss_pred cEEccCccccCCCccCCCcEEecCCCceeeeccc
Q 037878 1647 VILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTM 1680 (2280)
Q Consensus 1647 ~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~ 1680 (2280)
|+||++|+|++| +|++++|.|+|| +.+|+..
T Consensus 155 ~vIgagSvV~kd--vp~~~iv~G~PA-rvik~~~ 185 (200)
T d1krra_ 155 SVIGAGSIVTKD--IPPNVVAAGVPC-RVIREIN 185 (200)
T ss_dssp CEECTTCEECSC--BCTTEEEETTTT-EEEEECC
T ss_pred cEEeCCCEEeeE--cCCCcEEEEeCC-EEEEeCC
Confidence 999999999999 999999999995 4455543
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=99.49 E-value=8.2e-15 Score=135.11 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=68.8
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHH
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSE 1151 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~ 1151 (2280)
|.+++|+.|+++|+++||++ .|+.++|||++|||||.+++++++|++++++++++.++|+|||+++||++|+
T Consensus 4 P~~~~E~~l~~i~~~vL~~~--~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~LA~~i~ 75 (76)
T d2gdwa1 4 PTNAVESKLAEIWERVLGVS--GIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVA 75 (76)
T ss_dssp CCSHHHHHHHHHHHHHTTSS--CCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcCCC--CCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHhc
Confidence 56789999999999999996 7899999999999999999999999999999999999999999999999985
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=1.7e-13 Score=150.35 Aligned_cols=99 Identities=16% Similarity=0.252 Sum_probs=78.7
Q ss_pred eEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1594 VTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1594 ~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
+.+|+++.+...... +.+.||++|+||.+++|++|++||++|+||++|+|+++..+|++++|.|+| +
T Consensus 72 ~~~~~~~~~~~~~~~------------~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~P-a 138 (173)
T d1v3wa_ 72 TEIGEYVTIGHNAMV------------HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVP-G 138 (173)
T ss_dssp EEECSSCEECTTCEE------------ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETT-E
T ss_pred cccCcceeeeeeeee------------eeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCC-c
Confidence 455665555554433 788999999999999999999999999999999999887799999999999 4
Q ss_pred eeeecccchhhHHHHHhHHHHHHHHHhhhhhh
Q 037878 1674 VMIKNTMHALDDRIEEMDMKYKKIVGNLSANL 1705 (2280)
Q Consensus 1674 ~~~~~~~~~~~~~le~~~p~~~~~v~~l~~~~ 1705 (2280)
+.+|+......+.+++....|.++.+++..+.
T Consensus 139 k~i~~~~~~~~~~~~~~~~~y~~~~~~~~k~~ 170 (173)
T d1v3wa_ 139 KVVRQLTEEEIEWTKKNAEIYVELAEKHIKGR 170 (173)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEecCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666665556666666777877777765543
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=5.7e-13 Score=150.46 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=72.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
..||+++.++...... .+.+|+++.++.++..... .+...+++.||++|+||.++.|+++++||++|+||++|
T Consensus 102 ~~ig~~~~i~~~~~~~---~~~~~~~~~i~~~~~~~~~----~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~Igags 174 (201)
T d2oi6a1 102 ARLGKGSKAGHLTYLG---DAEIGDNVNIGAGTITCNY----DGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGT 174 (201)
T ss_dssp EEECTTCEEEEEEEEE---EEEECTTCEECTTCEEECB----SSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTC
T ss_pred eeeCCCeEEceeeeec---ccCcCccccccCceeEeec----ccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCC
Confidence 4688888887653332 3788888888888765322 22234678999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCC
Q 037878 1654 VAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~P 1671 (2280)
+|++| +|+++++.|.+
T Consensus 175 vV~kd--Vp~~si~vg~~ 190 (201)
T d2oi6a1 175 TVTRN--VGENALAISRV 190 (201)
T ss_dssp EECSC--BCTTCEECCCC
T ss_pred EEeee--cCCCCEEEecc
Confidence 99999 99999988744
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.38 E-value=5.4e-13 Score=152.15 Aligned_cols=106 Identities=15% Similarity=0.046 Sum_probs=89.1
Q ss_pred HHHHHHcCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCce---EeeCeEECCCcEEccCCeeCCCcE
Q 037878 1566 CIYLRLLGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGF---IFGKVEVQDNSVIGSQSLVLPNSV 1642 (2280)
Q Consensus 1566 ~~~lR~lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~---~~~~~~IG~~~~iG~~~~v~~g~~ 1642 (2280)
...-+..|+.|+.++.|+....+..+..+.||+++.|+++|.|..+...++.. ..++++|||+|+||++++|++|++
T Consensus 130 ~~~~~~~g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~ 209 (241)
T d1ssqa_ 130 NQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIE 209 (241)
T ss_dssp HHHHHHHSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCE
T ss_pred HHHhhheeeccccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCCcE
Confidence 34457788999999999988777777788888888888888886554433221 346799999999999999999999
Q ss_pred eCCCcEEccCccccCCCccCCCcEEecCCCc
Q 037878 1643 VSRDVILGALSVAPMHSVLQRGGIYIGSQSP 1673 (2280)
Q Consensus 1643 ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~ 1673 (2280)
||+||+||++|+|++| +|+++++.|+||+
T Consensus 210 IG~~a~IgAgsvV~kd--Vp~~~vv~G~PAr 238 (241)
T d1ssqa_ 210 VGKYAKIGANSVVLNP--VPEYATAAGVPAR 238 (241)
T ss_dssp ECTTCEECTTCEECSC--BCTTCEEETTTTE
T ss_pred ECCCCEECCCCEECCC--CCCCCEEEecCcE
Confidence 9999999999999999 9999999999964
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.36 E-value=1.9e-12 Score=143.60 Aligned_cols=86 Identities=23% Similarity=0.360 Sum_probs=69.9
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|.|++.+ ...+.+.||++|+|+.++.+. ++++||++||||.+++|.+|++||++|+||++|
T Consensus 107 ~~Ig~~~~I~~~~--~I~~~~~Ig~~~~i~~~~~i~-----------g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~Igags 173 (193)
T d3bswa1 107 AKIEKGVILNTSS--VIEHECVIGEFSHVSVGAKCA-----------GNVKIGKNCFLGINSCVLPNLSLADDSILGGGA 173 (193)
T ss_dssp CEECTTCEECTTC--EECTTCEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred ceeeecccccccc--ccceeeecccccccccccccc-----------ccceeeccccCCceeeEcCCeEECCCCEECCCC
Confidence 4566666666542 223346677777777777664 788999999999999999999999999999999
Q ss_pred cccCCCccCCCcEEecCCCce
Q 037878 1654 VAPMHSVLQRGGIYIGSQSPV 1674 (2280)
Q Consensus 1654 ~v~~~~~v~~~~~~~G~Pa~~ 1674 (2280)
+|++| +|++++|.|+||+.
T Consensus 174 vV~~d--v~~~~~~~G~PAk~ 192 (193)
T d3bswa1 174 TLVKN--QDEKGVFVGVPAKR 192 (193)
T ss_dssp EECSC--BCSCCEECCCCCCC
T ss_pred EECcC--CCCCcEEEEeCCEE
Confidence 99999 99999999999643
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.35 E-value=1.6e-12 Score=145.39 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCeeCCCceeccCCcc--------------cCCcceEECCCcEeCCCcEEeecccC------------------------
Q 037878 1573 GAKIGRYCSIRAINPV--------------SCPQQVTLGAGVHLGDFSRIIPGFYS------------------------ 1614 (2280)
Q Consensus 1573 G~~IG~~~~i~~~~~~--------------~~~~~~~iG~~~~i~~~~~i~~~~~~------------------------ 1614 (2280)
.+.||++++++..... ..-+.++||++|.|+++|.|.+....
T Consensus 20 Ni~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (208)
T d1xata_ 20 NIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGA 99 (208)
T ss_dssp TEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGC
T ss_pred CcEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeeccccccccccccccc
Confidence 3578888877643211 12356899999999999988431100
Q ss_pred -CCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeecccchhhHHHHHh
Q 037878 1615 -SIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRIEEM 1690 (2280)
Q Consensus 1615 -~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~le~~ 1690 (2280)
.+....++++||++|+||.+|+|++|++||+||+||++|+|++| +|++++|.|+||..+.+|..++..+++.++
T Consensus 100 ~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkd--vp~~si~~G~PAk~ik~R~~~~~i~~l~~~ 174 (208)
T d1xata_ 100 VNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIRKRFSDGDIQNLLEM 174 (208)
T ss_dssp CCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHHH
T ss_pred ccCccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeec--CCcCcEEEecCCEEEeccCCHHHHHHHHHh
Confidence 01114578999999999999999999999999999999999999 999999999997666666655444544443
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=99.32 E-value=2.6e-12 Score=143.83 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=86.2
Q ss_pred HcCCeeCCCceeccCCcc-----------cCCcceEECCCcEeCCCcEEeeccc--CC----------------------
Q 037878 1571 LLGAKIGRYCSIRAINPV-----------SCPQQVTLGAGVHLGDFSRIIPGFY--SS---------------------- 1615 (2280)
Q Consensus 1571 ~lG~~IG~~~~i~~~~~~-----------~~~~~~~iG~~~~i~~~~~i~~~~~--~~---------------------- 1615 (2280)
.-+++||++++|...+.. ...+.++||++|.|+++|.|..... ..
T Consensus 27 ~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~ 106 (203)
T d1mr7a_ 27 LENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLD 106 (203)
T ss_dssp STTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGG
T ss_pred CCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccc
Confidence 336789998888653211 1234689999999999998742211 00
Q ss_pred CceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCCCceeeecccchhhHHH
Q 037878 1616 IGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQSPVMIKNTMHALDDRI 1687 (2280)
Q Consensus 1616 ~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~l 1687 (2280)
.....++++||++|+||++|+|++|++||++|+||++|+|+++ +|++++|.|+||+.+.+|..++...++
T Consensus 107 ~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kd--v~~~~i~~G~PAk~ik~r~~~e~i~~l 176 (203)
T d1mr7a_ 107 QLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQDTINQL 176 (203)
T ss_dssp GSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEESSCHHHHHHH
T ss_pred cccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeee--CCCCEEEEEeCCEEEeccCCHHHHHHH
Confidence 0113468999999999999999999999999999999999999 999999999997666666544443333
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.31 E-value=1.7e-12 Score=158.67 Aligned_cols=51 Identities=35% Similarity=0.503 Sum_probs=46.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCcccee
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAEL 73 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~ 73 (2280)
|+|+|||||+|||+||++|+++|+ +|+||||++++||+++|++.+++.++.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~g~~~d~ 52 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAGGKLRSVSQDGLIWDE 52 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSSCSSCCEEEETTEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCCCCcCceEEeccCCEEEec
Confidence 689999999999999999999999 699999999999999999877655443
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.29 E-value=5.5e-12 Score=142.00 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=54.0
Q ss_pred ceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccc-----cCCCccCCCcEE
Q 037878 1593 QVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVA-----PMHSVLQRGGIY 1667 (2280)
Q Consensus 1593 ~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v-----~~~~~v~~~~~~ 1667 (2280)
.+.||++|+|++++.|. +.++||++|+||++++|+.+ +||++|+|+++|++ +++..+|+|++|
T Consensus 103 ~~~IG~~v~IG~~~~i~-----------g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v 170 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVH-----------GPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAAIGVTIPDGRYIPAGMVV 170 (210)
T ss_dssp SEEECTTCEECTTCEEE-----------EEEEECTTCEECTTCEEEEE-EECTTCEECTTCEEESCEECTTBEECTTCEE
T ss_pred ceeeccccccccccccc-----------cCCcccCCcEeeCCcccccc-ccccCcEEecCcEecCcEeCCCcEECCCcEE
Confidence 37778888888888774 56788888888888888864 78888888755554 455668999999
Q ss_pred ecC-CCceeeecc
Q 037878 1668 IGS-QSPVMIKNT 1679 (2280)
Q Consensus 1668 ~G~-Pa~~~~~~~ 1679 (2280)
.|+ | ...+|..
T Consensus 171 ~g~~~-~~~i~~~ 182 (210)
T d1qrea_ 171 TSQAE-ADKLPEV 182 (210)
T ss_dssp CSHHH-HHTCCBC
T ss_pred eCCCc-ccccccC
Confidence 996 5 3333443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.26 E-value=1.1e-11 Score=148.15 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=51.6
Q ss_pred CCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcCCccccc--ccccCCCCChhhHhhhccC
Q 037878 200 PTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKN--GKFYRSPTSKPTESETQVM 267 (2280)
Q Consensus 200 g~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~p~~v~~--~i~f~p~~~~~~~~~l~~~ 267 (2280)
+..++++++|..|...++++ .+++.+| +.+++|++++++|..+.. .+.|.|+.+..+...+...
T Consensus 224 ~~~i~~~~~v~~i~~~~~~v--~v~~~~g--~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~ 289 (347)
T d1b5qa1 224 DPRLQLNKVVREIKYSPGGV--TVKTEDN--SVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQF 289 (347)
T ss_dssp CTTEESSCCEEEEEECSSCE--EEEETTS--CEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHS
T ss_pred ccccccccccccccccCccE--EEEECCC--CEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhc
Confidence 56799999999999988865 6778888 578999999998887644 4678999888877665433
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=4.6e-12 Score=138.13 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=85.8
Q ss_pred chHHHHHHHhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEeeec--ccC---CCcceEeeeEEEccCeEEc
Q 037878 2174 FLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFGHI--YEG---DGGKVKFGKIRIGEGGFVG 2248 (2280)
Q Consensus 2174 ~~~~~~~r~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~h~--~~~---~~~~~~~~~~~~~~~~~~g 2248 (2280)
.+..++..-+|.+|-||++|||+.++.|.+...|+|| |+|.|+++|.+.+|. ... ........+|+||++||||
T Consensus 60 ~i~~p~~~~~G~ni~IG~~~~I~~~~~I~d~~~I~IG-~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG 138 (182)
T d1ocxa_ 60 YIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIG-DNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIG 138 (182)
T ss_dssp EECSCEEESSSTTEEECSSEEECSSEEEECSSCEEEC-TTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEEC
T ss_pred EEECCEEEEeccceeECCccEECCCcEEecCCeEEEC-CCeEECcCceEeecccccceeeeeccceEcceeEECceEeeC
Confidence 3445555667777668899999999999999999999 999999999999943 321 3456678899999999999
Q ss_pred cceeEcCCcEeCCCceecccceeecc
Q 037878 2249 SRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2249 ~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
.+|+|+||++||++++||++|+|+|.
T Consensus 139 ~~~~I~~Gv~IG~~~vIgagsvV~kd 164 (182)
T d1ocxa_ 139 GRAVINPGVTIGDNVVVASGAVVTKD 164 (182)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSC
T ss_pred ceeeccCcEEECCCCEECCCCEEccC
Confidence 99999999999999999999999984
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=4.7e-12 Score=140.16 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=89.3
Q ss_pred HhhhcCCcchHHHHHHHhcCeeeccCcEEEccceeeecCceeEEecCceEECCCceEee--ecccC---CCcceEeeeEE
Q 037878 2166 FVEMTSGSFLFVAWMKLMGAEIELGQGAYVDSMGAVLNPEMVEMEGNGGCVGKEALLFG--HIYEG---DGGKVKFGKIR 2240 (2280)
Q Consensus 2166 ~~~~~~~~~~~~~~~r~~g~~ig~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~--h~~~~---~~~~~~~~~~~ 2240 (2280)
|.+...++.+.+.+...+|.+|-||++++|+.++.+.+...|+|| |+|.|+++|.|.+ |.... ........+|+
T Consensus 54 ~~~iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~~i~IG-~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~ 132 (200)
T d1krra_ 54 FATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIG-DNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT 132 (200)
T ss_dssp SSBCCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEEC-SSCEECSSCEEESEECCSSTTTCTTCCBEECCEE
T ss_pred cCcCCCCCEEcCCEEEecCCccEECCccEECceEEEecCCCcEeC-CCccccceeEEecccccceecccccceeecceEE
Confidence 445555566666555566665557799999999999999999999 9999999999998 44332 24566778999
Q ss_pred EccCeEEccceeEcCCcEeCCCceecccceeecc
Q 037878 2241 IGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKE 2274 (2280)
Q Consensus 2241 ~~~~~~~g~~~~~~~g~~~~~~~~~~~~s~~~~~ 2274 (2280)
||++||||++|+|+||++||++++||++|+|+|.
T Consensus 133 Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kd 166 (200)
T d1krra_ 133 IGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD 166 (200)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred EccCcccceeeecccccccCCCcEEeCCCEEeeE
Confidence 9999999999999999999999999999999974
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.11 E-value=4.6e-11 Score=134.30 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=56.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
+.||++|.|+.++.+ -..++|||+|+||.++.| ...+||++|+||.++++ .|++|++|+.|.+++
T Consensus 104 ~~IG~~v~IG~~~~i--~g~~~IGd~~~IG~gs~i------------~~~~IG~~~vIg~~svv-~g~~i~~g~~I~~g~ 168 (210)
T d1qrea_ 104 VYIGNNVSLAHQSQV--HGPAAVGDDTFIGMQAFV------------FKSKVGNNCVLEPRSAA-IGVTIPDGRYIPAGM 168 (210)
T ss_dssp EEECTTCEECTTCEE--EEEEEECTTCEECTTCEE------------EEEEECTTCEECTTCEE-ESCEECTTBEECTTC
T ss_pred eeecccccccccccc--ccCCcccCCcEeeCCccc------------cccccccCcEEecCcEe-cCcEeCCCcEECCCc
Confidence 579999999987544 235899999999999988 33579999999998877 467888888888888
Q ss_pred cccCC
Q 037878 1654 VAPMH 1658 (2280)
Q Consensus 1654 ~v~~~ 1658 (2280)
++..+
T Consensus 169 ~v~g~ 173 (210)
T d1qrea_ 169 VVTSQ 173 (210)
T ss_dssp EECSH
T ss_pred EEeCC
Confidence 87665
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.03 E-value=1.1e-09 Score=127.25 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=72.5
Q ss_pred CeeCCCceeccCCcccC-----CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcE
Q 037878 1574 AKIGRYCSIRAINPVSC-----PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVI 1648 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~-----~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~ 1648 (2280)
+.||++++|+.++.+.. ...+.||+++.|..++.|+ ..+.||+++++++++.+..+++||++|+
T Consensus 84 v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~-----------h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ 152 (262)
T d2jf2a1 84 VEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIA-----------HDCTVGNRCILANNATLAGHVSVDDFAI 152 (262)
T ss_dssp EEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECTTCE
T ss_pred EEECCeeeecceEeccCccccCccceEECCCCEEecccccc-----------cccccCCCeeecCccccccceeeCceEE
Confidence 46788888877665532 3458999999999999996 6789999999999999999999999999
Q ss_pred EccCccccCCCccCCCcEEecC
Q 037878 1649 LGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1649 vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
||.++.+...-.+.+++...+.
T Consensus 153 ig~~~~i~~~v~IG~~a~igag 174 (262)
T d2jf2a1 153 IGGMTAVHQFCIIGAHVMVGGC 174 (262)
T ss_dssp ECTTCEECTTCEECTTCEECSS
T ss_pred eccCceeccccEeehhceeecc
Confidence 9999999888777888887664
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.00 E-value=4.8e-10 Score=130.86 Aligned_cols=41 Identities=39% Similarity=0.591 Sum_probs=37.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+++||+|||||++||+||+.|+++|+ +|+||||++.+||+.
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~~g~~~ 41 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNKLGRKL 41 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCcce
Confidence 36899999999999999999999999 699999999999854
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.97 E-value=1.7e-09 Score=117.69 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=53.6
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILG 1650 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg 1650 (2280)
+.||+++.+....... .++||++++|+.++.|. ..++||++|+||++|+|.++..|+++++++
T Consensus 74 ~~ig~~~~~~~~~~~~---~~~i~~~~~ig~~~~i~-----------~gv~IG~~~~IgagsvV~~~~~i~~~~v~~ 136 (172)
T d1xhda_ 74 LILEDDVTVGHQVILH---SCHIKKDALIGMGSIIL-----------DGAEIGEGAFIGAGSLVSQGKKIPPNTLAF 136 (172)
T ss_dssp EEECTTCEECTTCEEE---SCEECTTCEECTTCEEC-----------TTCEECTTCEECTTCEECTTCEECTTEEEE
T ss_pred eeeeeeeeeeeeeccc---ccccccceEEecccEee-----------CCcEEcCcccccceEEEeeCeEECCCeEEE
Confidence 4688888887764333 37899999999999985 678999999999999999999999999884
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=3.9e-11 Score=110.01 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCC-CCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHH
Q 037878 1082 IVEFLKGLVSEQTGI-PITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFS 1150 (2280)
Q Consensus 1082 ~e~~l~~iw~~vLg~-~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l 1150 (2280)
+|+.|.++|+++||+ ++++|+++++||++|+|||+++++.++|++.+|+++++.+|+ ++|+++|++..
T Consensus 5 ~e~~l~~~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l~~~~l~-~~Ti~~L~el~ 73 (76)
T d2pnga1 5 AQRDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVR-QLTLRKLQEMS 73 (76)
T ss_dssp CCCCGGGTHHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCCCCHHHHT-TCCSHHHHHTS
T ss_pred HHHHHHHHHHHHhccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCCCCHHHHH-HhhHHHHHHHH
Confidence 456788999999998 478999999999999999999999999999999999999998 59999999754
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.94 E-value=5.7e-10 Score=130.25 Aligned_cols=43 Identities=33% Similarity=0.462 Sum_probs=38.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
|.+++||+|||||+|||.||+.|+++|+ +|+||||++++|+++
T Consensus 1 M~~~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~~G~k~ 43 (253)
T d2gqfa1 1 MSQYSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKKIGRKI 43 (253)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHH
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCCce
Confidence 4567899999999999999999999998 699999999998643
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.92 E-value=1.6e-09 Score=132.16 Aligned_cols=44 Identities=45% Similarity=0.655 Sum_probs=38.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCC-CceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~-~~VtVlEk~~riGG~~ 61 (2280)
|+..++|+|||||+|||+||+.|+++|. .+|+||||++.+||.-
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W 45 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW 45 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcc
Confidence 5566899999999999999999988763 2699999999999954
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=98.91 E-value=5.5e-10 Score=105.14 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=71.6
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhh
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVM 1155 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~ 1155 (2280)
..++++++|++.+.+.+|++++.|..|.+|+++|+|||.++++..++++.+|++++..++|++||+++|++++.+...
T Consensus 6 t~d~l~~~l~e~~~~~~g~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~~l~ 83 (86)
T d2af8a_ 6 TTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALA 83 (86)
T ss_dssp CHHHHHHHHHHTTCCCSCCCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHccccCCCccccccCCCHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHHHHHHhh
Confidence 356778888888888899999999999999999999999999999999999999999999999999999999987543
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=98.91 E-value=8.6e-10 Score=105.87 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=74.2
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhcc
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMKS 1157 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~~ 1157 (2280)
..+++.++|+++..+.+|++++.|..|.+|+++|+|||.+++++.+|++.+|++++..++|++||+++|++++.+.....
T Consensus 5 t~d~l~~~lre~~~~~~~~~~~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~l~~~l~~~l~~~ 84 (95)
T d1nq4a_ 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLTGA 84 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhHHhCCChhhcccCCCHHHcCCcHHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHHHHHhccCC
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999998765444
Q ss_pred C
Q 037878 1158 Q 1158 (2280)
Q Consensus 1158 ~ 1158 (2280)
.
T Consensus 85 ~ 85 (95)
T d1nq4a_ 85 S 85 (95)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.91 E-value=1.4e-09 Score=123.64 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=78.8
Q ss_pred HHHHHHcCCEECCCcEECcc-ccCCCCceEECCCCEeCCCCEEeeccccCCc---eeecCEEECCCcEECCCCEECCCCE
Q 037878 1310 NWWFEMLGAKLGSSVLLDTV-DITDPSLVLIGDGAVISEGALIQSHEVKNGV---LSFQPIKIARKVSVGPYAVIQKGSV 1385 (2280)
Q Consensus 1310 ~~~~R~lGa~Ig~~v~i~~~-~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~---~~~~~i~Ig~~~~iG~~~~i~pg~~ 1385 (2280)
...-+..|+.|+.++.|+.. .+..+..+.||+++.||++|.|..+...++. ..-++++||+||+||++|+|.+|++
T Consensus 130 ~~~~~~~g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~ 209 (241)
T d1ssqa_ 130 NQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIE 209 (241)
T ss_dssp HHHHHHHSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCE
T ss_pred HHHhhheeeccccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCCcE
Confidence 34556678888888888643 3334557778888888887777544433321 2236799999999999999999999
Q ss_pred ECCCCEECcCCcc----CCCCccccCCCceee
Q 037878 1386 IGEEAEVAPLQKS----EGGKPILKSTNANYV 1413 (2280)
Q Consensus 1386 ig~~a~ig~~s~v----~~~~~~~~g~p~~~~ 1413 (2280)
||+||+||++|+| |+++.+ .|+||+..
T Consensus 210 IG~~a~IgAgsvV~kdVp~~~vv-~G~PAr~I 240 (241)
T d1ssqa_ 210 VGKYAKIGANSVVLNPVPEYATA-AGVPARIV 240 (241)
T ss_dssp ECTTCEECTTCEECSCBCTTCEE-ETTTTEEC
T ss_pred ECCCCEECCCCEECCCCCCCCEE-EecCcEEe
Confidence 9999999999999 888888 89999864
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.89 E-value=8.2e-10 Score=103.56 Aligned_cols=73 Identities=8% Similarity=0.160 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhC--CCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCc--ccHHHHHHHHHhhhh
Q 037878 1083 VEFLKGLVSEQTG--IPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTA--TCIADLASFSENLVM 1155 (2280)
Q Consensus 1083 e~~l~~iw~~vLg--~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~--pti~~LA~~l~~~~~ 1155 (2280)
++.++++++++++ ++++.|+.+++||++|+|||.++++...|+++||++++..+++.+ ||+++|+++++....
T Consensus 2 ~e~i~~il~~~~~l~~~~~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~i~~~~l~~~~~~Ti~~la~~i~~~~~ 78 (83)
T d2jq4a1 2 NATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLILD 78 (83)
T ss_dssp HHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHcCCCCCHHHHhCccHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 5678999999865 467789999999999999999999999999999999999999965 999999999987654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.88 E-value=1.4e-09 Score=129.28 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=35.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+++||+|||||++|+++|++|+++|+ +|+|+||++..++
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~~G~-~V~viE~~~~~~~ 40 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDPPHT 40 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSSCS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCc
Confidence 57899999999999999999999998 6999999887654
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=1.2e-09 Score=103.34 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCccccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhh
Q 037878 1079 NKDIVEFLKGLVSEQTGIPITKVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLV 1154 (2280)
Q Consensus 1079 ~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~ 1154 (2280)
.+++.++|+++|+++||++++.|+.+++|+++|+|||.+++++.++++.||++++..+++++||+++|++++.+..
T Consensus 6 ~~~i~~~l~~iv~~~l~~~~~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (85)
T d1vkua_ 6 RKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKL 81 (85)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHhcCcchHHHHHHHHHHHHccCCCCHHHHHHcCCHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999999999999999999999999999999998654
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=98.87 E-value=1.3e-09 Score=101.11 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHhCCCCccccCCCChhhccc-chHHHHHHHHHHHHHhCCccCccccc--CcccHHHHHHHHHhh
Q 037878 1080 KDIVEFLKGLVSEQTGIPITKVSATDSLVSYGI-DSIGVVRAAQKLSDFLGVPVGAVDIF--TATCIADLASFSENL 1153 (2280)
Q Consensus 1080 ~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff~lGG-dSL~a~~l~~~l~~~~g~~l~~~di~--~~pti~~LA~~l~~~ 1153 (2280)
+++++.++++|++++|.++..+++|++||++|| |||.++++...+++.||++++..+++ +++|+++|++++++.
T Consensus 3 e~I~~~v~~il~~~l~~~~~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~~~~l~~~~~~Tv~~l~~~v~~l 79 (80)
T d1dv5a_ 3 EAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA 79 (80)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCccccccCCCCHHHHHHHHHHHHHHHCCCCCHHHhhHHhCCCHHHHHHHHHHc
Confidence 578899999999999999889999999999886 99999999999999999999999999 789999999999764
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=3.9e-09 Score=105.82 Aligned_cols=79 Identities=23% Similarity=0.401 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhhhhc
Q 037878 1078 SNKDIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLVMK 1156 (2280)
Q Consensus 1078 ~~~~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~~~~ 1156 (2280)
...++.+.|+++|+++||+++++|+.+.+|+ +||+|||.+++++.+|+++||+.++..++|++||+++|++++......
T Consensus 4 t~~~i~~~l~~iv~~~l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~i~~~~~~~~~Tv~~l~~~l~~~~~~ 83 (115)
T d1klpa_ 4 TQEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEEE 83 (115)
T ss_dssp CHHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHCCCccccCcccchhhhcccchhHHHHHHHHHHHHHCCCCCHHHHHhCccHHHHHHHHHHHhcc
Confidence 3678899999999999999999999999998 699999999999999999999999999999999999999999876543
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.84 E-value=8e-09 Score=122.09 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=35.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
|.++.||+|||||++||++|++|+++|. +|+||||++..+|
T Consensus 1 m~~~~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~~g 41 (276)
T d1ryia1 1 MKRHYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMGGR 41 (276)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTTTT
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC
Confidence 4456899999999999999999999998 6999999764444
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.78 E-value=6.3e-09 Score=114.92 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=74.2
Q ss_pred cCCeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEcc
Q 037878 1572 LGAKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGA 1651 (2280)
Q Consensus 1572 lG~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~ 1651 (2280)
.||.||+++.|.+.. ...+-++||++|+|+.++.|++-..- ....++.|||+||||++|.|..|+.||++|+||+
T Consensus 130 igA~ig~~~midt~a--~vgs~aqIG~~vhis~g~~igGvlep---~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~ 204 (274)
T d3tdta_ 130 IGAYVDEGTMVDTWA--TVGSCAQIGKNVHLSGGVGIGGVLEP---LQANPTIIEDNCFIGARSEVVEGVIVEEGSVISM 204 (274)
T ss_dssp TTCEECTTCEECTTE--EECTTCEECTTCEECTTCEECCSBTT---BCSSCCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred cccEEcCCcEEcccc--eecceeEECCCeEECCCcEEEecccc---CCCCCcEEecCcEeccCceEecCEEecCceEecc
Confidence 489999999999863 33445778888888777777533322 2347999999999999999999999999999999
Q ss_pred CccccCC-------------CccCCCcEEe
Q 037878 1652 LSVAPMH-------------SVLQRGGIYI 1668 (2280)
Q Consensus 1652 ~s~v~~~-------------~~v~~~~~~~ 1668 (2280)
|+++.++ ++||+++++.
T Consensus 205 gv~i~~~t~i~d~~~g~~~~g~vP~~svvv 234 (274)
T d3tdta_ 205 GVYLGQSTRIYDRETGEIHYGRVPAGSVVV 234 (274)
T ss_dssp TCEECTTCCEEETTTCCEESSEECTTEEEE
T ss_pred ceEEeccccceeccCCcEeccccCCCCEEe
Confidence 9999984 1399999886
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.5e-09 Score=134.39 Aligned_cols=53 Identities=36% Similarity=0.512 Sum_probs=47.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCcccee
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAGAEL 73 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g~~~ 73 (2280)
++.||+|||||+|||+||++|+++|+ +|+|||+++++|||++|++.+++.+++
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~r~GGr~~t~~~~g~~~d~ 56 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADL 56 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSBTTCCEEEETTEEEES
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCcccEEEEEeCCEEEEC
Confidence 46789999999999999999999999 799999999999999999887655443
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.75 E-value=4.1e-08 Score=113.91 Aligned_cols=69 Identities=10% Similarity=0.195 Sum_probs=58.6
Q ss_pred CcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecC
Q 037878 1591 PQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGS 1670 (2280)
Q Consensus 1591 ~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~ 1670 (2280)
...+.||+++.|..++.++ ..+.||+++.+++++.+..+++||++|.||.++.+..+-.|.+++...+.
T Consensus 101 ~~~t~iG~~~~i~~~~~i~-----------~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~Igag 169 (259)
T d1j2za_ 101 IKKTLIGDKNLLMAYVHVA-----------HDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGK 169 (259)
T ss_dssp TSEEEECSSCEECTTCEEC-----------TTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred cccccccCceEEecccccc-----------ceecccceeeeeccccccccccccccceecceeeeecccEeccceeeeee
Confidence 3568999999999999986 56789999999999999999999999999999999888777888777654
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.74 E-value=1.1e-08 Score=113.65 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=73.4
Q ss_pred CEECCCcEECccc---------------cCCCCceEECCCCEeCCCCEEee--ccc-----------------------c
Q 037878 1318 AKLGSSVLLDTVD---------------ITDPSLVLIGDGAVISEGALIQS--HEV-----------------------K 1357 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~---------------~~~~~~~~IG~~~~I~~~~~l~~--~~~-----------------------~ 1357 (2280)
..||++++|+... ...-+.++||++|.|+++|.|.. +.. .
T Consensus 21 i~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (208)
T d1xata_ 21 IRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAV 100 (208)
T ss_dssp EEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCC
T ss_pred cEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeecccccccccccccccc
Confidence 5677777775321 11235689999999999999832 110 0
Q ss_pred CCceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeec
Q 037878 1358 NGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1358 ~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~ 1414 (2280)
.+....++++||++|+||.+|+|.||++||+||+||++|+| ++++.+ .|+||+...
T Consensus 101 ~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si~-~G~PAk~ik 160 (208)
T d1xata_ 101 NGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIV-GGNPARTIR 160 (208)
T ss_dssp CCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-ETTTTEEEE
T ss_pred cCccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcEE-EecCCEEEe
Confidence 01224568999999999999999999999999999999999 677777 899999864
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.74 E-value=8.3e-09 Score=113.80 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=45.1
Q ss_pred eecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCcee
Q 037878 1362 SFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANY 1412 (2280)
Q Consensus 1362 ~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~ 1412 (2280)
.-++++||++|+||++|+|.||++||++|+||++|+| ++++.+ .|+||+.
T Consensus 139 i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~~-~G~PAk~ 192 (193)
T d3bswa1 139 CAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVF-VGVPAKR 192 (193)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEE-CCCCCCC
T ss_pred ccccceeeccccCCceeeEcCCeEECCCCEECCCCEECcCCCCCcEE-EEeCCEE
Confidence 3467999999999999999999999999999999998 777777 7899874
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.74 E-value=2e-08 Score=120.49 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=36.4
Q ss_pred HhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 196 SKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 196 a~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
+++.|++|+.+++|++|+.+++++ ..|+|++| +++||+||+|
T Consensus 158 a~~~gv~i~~~~~V~~i~~~~~~v-~~V~T~~g---~i~a~~VV~a 199 (305)
T d1pj5a2 158 TESAGVTYRGSTTVTGIEQSGGRV-TGVQTADG---VIPADIVVSC 199 (305)
T ss_dssp HHHTTCEEECSCCEEEEEEETTEE-EEEEETTE---EEECSEEEEC
T ss_pred hhcccccccCCceEEEEEEeCCEE-EEEeccce---eEECCEEEEe
Confidence 456699999999999999998876 46788888 6999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.73 E-value=1.2e-08 Score=120.75 Aligned_cols=42 Identities=38% Similarity=0.611 Sum_probs=38.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
++.+.||+|||||+|||++|++|+++|+ +|+||||++.+||.
T Consensus 4 p~~~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~iGGt 45 (298)
T d1w4xa1 4 PPEEVDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGGV 45 (298)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTH
T ss_pred CCCCCCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCCcccc
Confidence 4567899999999999999999999999 69999999999994
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.71 E-value=9.8e-09 Score=114.25 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=77.3
Q ss_pred HHHHcCCEECCCcEECcccc------------CCCCceEECCCCEeCCCCEEeec--c--ccC-----------------
Q 037878 1312 WFEMLGAKLGSSVLLDTVDI------------TDPSLVLIGDGAVISEGALIQSH--E--VKN----------------- 1358 (2280)
Q Consensus 1312 ~~R~lGa~Ig~~v~i~~~~~------------~~~~~~~IG~~~~I~~~~~l~~~--~--~~~----------------- 1358 (2280)
....-+++||++++|.+... ...+.++||++|.|+++|.|... . .++
T Consensus 24 v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~ 103 (203)
T d1mr7a_ 24 LEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMP 103 (203)
T ss_dssp HTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCC
T ss_pred eEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCccc
Confidence 33444688999888853211 02356999999999999998411 1 111
Q ss_pred ---CceeecCEEECCCcEECCCCEECCCCEECCCCEECcCCcc----CCCCccccCCCceeecc
Q 037878 1359 ---GVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAPLQKS----EGGKPILKSTNANYVQK 1415 (2280)
Q Consensus 1359 ---~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v----~~~~~~~~g~p~~~~~~ 1415 (2280)
+....++++||++|+||.+|+|+||++||++|.||++|+| ++++.+ .|+||+....
T Consensus 104 ~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~-~G~PAk~ik~ 166 (203)
T d1mr7a_ 104 KLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLA-GGNPANEIKQ 166 (203)
T ss_dssp CGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE-EETTEEEEEE
T ss_pred ccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEE-EEeCCEEEec
Confidence 0112368999999999999999999999999999999998 778877 8999998743
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=98.66 E-value=8.7e-09 Score=93.92 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHH
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFS 1150 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l 1150 (2280)
++.++++++++++||++++.|..+.+|+ +||.|||.++.+..++++.||++++..+++.++|+++|++++
T Consensus 3 dv~~~v~~iia~~l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~i 73 (74)
T d1f80d_ 3 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI 73 (74)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCcCHHHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHH
Confidence 5678999999999999999999999998 599999999999999999999999999999999999999886
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.66 E-value=1.2e-08 Score=110.99 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=72.7
Q ss_pred CEECCCcEECccccCCCCceEECCCCEeCCCCEEeecc----c---------------------------cCCceeecCE
Q 037878 1318 AKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHE----V---------------------------KNGVLSFQPI 1366 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~----~---------------------------~~~~~~~~~i 1366 (2280)
.+||+++.|++... ..+.++||++|.|+++|.|.+.. + .......+++
T Consensus 11 ~~I~~~~~I~~~a~-I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
T d1v3wa_ 11 PRIHPSAFVDENAV-VIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGA 89 (173)
T ss_dssp CEECTTCEECTTSE-EEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESC
T ss_pred CEECcCcEECCCCE-EeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeee
Confidence 46888888876544 23578899999999999885321 0 0122234579
Q ss_pred EECCCcEECCCCEECCCCEECCCCEECcCCccC------CCCccccCCCceeec
Q 037878 1367 KIARKVSVGPYAVIQKGSVIGEEAEVAPLQKSE------GGKPILKSTNANYVQ 1414 (2280)
Q Consensus 1367 ~Ig~~~~iG~~~~i~pg~~ig~~a~ig~~s~v~------~~~~~~~g~p~~~~~ 1414 (2280)
.||++|+||.+|+|.+|++||++|+||++|+|. +++.+ .|+||+..+
T Consensus 90 ~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv-~G~Pak~i~ 142 (173)
T d1v3wa_ 90 KVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV-LGVPGKVVR 142 (173)
T ss_dssp EECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE-EETTEEEEE
T ss_pred ecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEE-cCCCceEec
Confidence 999999999999999999999999999999885 45555 689998763
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=98.63 E-value=7.4e-09 Score=95.92 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCc---cccCCCChhhcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1084 EFLKGLVSEQTGIPIT---KVSATDSLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1084 ~~l~~iw~~vLg~~~~---~i~~~~~Ff~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
+.|++++++.+|.... .+..|.+|+++|+|||.+++++.+|+++||+.++..++|++||+++|++++.+.
T Consensus 6 e~l~~il~e~~g~~~~~~~~~d~d~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~v~~~ 78 (82)
T d1or5a_ 6 DDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTT 78 (82)
T ss_dssp HHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCcccccCCCcCcCHHHcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHHHHHHhc
Confidence 4567777777776432 346678899999999999999999999999999999999999999999999753
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.61 E-value=1.2e-08 Score=122.28 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=44.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecCcc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEEAG 70 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~~g 70 (2280)
+++|+|||||+|||+||++|+++|+ +|+|+||++++||+|+|.+.++.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~~iGG~~~t~~~~~~g 50 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDSETN 50 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSSGGGCEEECTTTC
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCCCCcCeeeEEEecCCC
Confidence 5799999999999999999999998 799999999999999998754433
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.56 E-value=1.2e-07 Score=113.63 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=37.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
.++.||+|||||++||+||+.|+++|. +|+|+||.+..||.
T Consensus 14 ~e~~DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~~~gG~ 54 (308)
T d1y0pa2 14 HDTVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIGGN 54 (308)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTT
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCCc
Confidence 356899999999999999999999998 69999999999884
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.7e-08 Score=120.11 Aligned_cols=46 Identities=33% Similarity=0.377 Sum_probs=42.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEeecC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEIEE 68 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~~~ 68 (2280)
.||+|||||+|||+||++|+++|+ +|+|+||++++||+|+|.+..+
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~~iGG~~~t~~~~g 47 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEG 47 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSSSSGGGCEEEETT
T ss_pred ccEEEECCcHHHHHHHHHHHhCCC-cEEEEECCCCcccceEEeCcCC
Confidence 699999999999999999999998 6999999999999999986544
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.48 E-value=1.3e-07 Score=104.29 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=64.5
Q ss_pred HHcCCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEEC
Q 037878 1314 EMLGAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVA 1393 (2280)
Q Consensus 1314 R~lGa~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig 1393 (2280)
-=.||.||+++.|++.... -....||++|.|+.++.|+|-. ..+.-.|++||++|+||++|.|..|+.||++|+||
T Consensus 128 VNigA~ig~~~midt~a~v-gs~aqIG~~vhis~g~~igGvl---ep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~ 203 (274)
T d3tdta_ 128 VNIGAYVDEGTMVDTWATV-GSCAQIGKNVHLSGGVGIGGVL---EPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVIS 203 (274)
T ss_dssp ECTTCEECTTCEECTTEEE-CTTCEECTTCEECTTCEECCSB---TTBCSSCCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eccccEEcCCcEEccccee-cceeEECCCeEECCCcEEEecc---ccCCCCCcEEecCcEeccCceEecCEEecCceEec
Confidence 3468999999999874431 2234566666666655555432 12334799999999999999999999999999999
Q ss_pred cCCccCCCCcc
Q 037878 1394 PLQKSEGGKPI 1404 (2280)
Q Consensus 1394 ~~s~v~~~~~~ 1404 (2280)
+|+.+.+.+++
T Consensus 204 ~gv~i~~~t~i 214 (274)
T d3tdta_ 204 MGVYLGQSTRI 214 (274)
T ss_dssp TTCEECTTCCE
T ss_pred cceEEeccccc
Confidence 99999665555
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.47 E-value=3.3e-07 Score=110.46 Aligned_cols=42 Identities=36% Similarity=0.473 Sum_probs=38.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++.||+|||||++||+||+.|+++|. +|+|+||.+..||.+
T Consensus 21 ~et~DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~~~gG~s 62 (322)
T d1d4ca2 21 KETTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNT 62 (322)
T ss_dssp CEECSEEEECSSHHHHHHHHHHHTTTC-CEEEECSSSSSCTTG
T ss_pred CCcceEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCcc
Confidence 446799999999999999999999998 699999999999843
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.42 E-value=5.3e-07 Score=108.24 Aligned_cols=42 Identities=33% Similarity=0.495 Sum_probs=38.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
+.++.||+|||||++||+||+.|+++|. +|+|+||.+..||.
T Consensus 16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~~~gG~ 57 (317)
T d1qo8a2 16 PSETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGGN 57 (317)
T ss_dssp CSEEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSCTT
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence 3456899999999999999999999998 69999999999884
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=1.2e-07 Score=101.89 Aligned_cols=42 Identities=33% Similarity=0.560 Sum_probs=38.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
..+.++|+|||||+|||+||++|+++|+ +|+|||+++++||.
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG~ 81 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQ 81 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTT
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCce
Confidence 3456899999999999999999999999 79999999999993
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=2.3e-07 Score=84.88 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCChh-hcccchHHHHHHHHHHHHHhCCccCcccccCcccHHHHHHHHHhh
Q 037878 1081 DIVEFLKGLVSEQTGIPITKVSATDSLV-SYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENL 1153 (2280)
Q Consensus 1081 ~~e~~l~~iw~~vLg~~~~~i~~~~~Ff-~lGGdSL~a~~l~~~l~~~~g~~l~~~di~~~pti~~LA~~l~~~ 1153 (2280)
++++.++++.++.+|++++.|.++++|. +||.|||..+.+...+.+.||++++..++...+|+++|.+++++.
T Consensus 2 ~I~~~v~~iia~~l~i~~~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~ 75 (77)
T d1t8ka_ 2 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 75 (77)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHcCCCCcchhccccchhHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHc
Confidence 4678999999999999999999999998 599999999999999999999999999999999999999999864
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.36 E-value=1.4e-06 Score=96.43 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=29.5
Q ss_pred ceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECc
Q 037878 1336 LVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAP 1394 (2280)
Q Consensus 1336 ~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~ 1394 (2280)
.++||++|.|+++|.|. ++++||++|.||++++|. ++.||+++.|.+
T Consensus 14 ~v~Ig~~~~I~~~vvI~-----------~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~ 60 (196)
T d1g97a1 14 DVEIASEVQIEANVTLK-----------GQTKIGAETVLTNGTYVV-DSTIGAGAVITN 60 (196)
T ss_dssp TCEECTTCEECTTCEEE-----------SSCEECTTCEECTTCEEE-SCEECTTCEECS
T ss_pred CcEECCCCEECCCCEEC-----------CCcEECCCceEcCceEee-eeecccCccccc
Confidence 45566666666666665 345577777777777664 466666666643
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.34 E-value=4.6e-07 Score=105.69 Aligned_cols=39 Identities=36% Similarity=0.549 Sum_probs=35.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
+...+|+|||||++||+||..|+++|+ +|+||||++..+
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~~~~ 40 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQPL 40 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSC
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCC
Confidence 456789999999999999999999999 799999987654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.30 E-value=1.5e-06 Score=102.32 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=37.7
Q ss_pred HCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 198 YLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 198 ~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
..+..+.++++|+.+..+++++.+.+.+.+++.+++++|.||.|
T Consensus 118 ~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~A 161 (288)
T d3c96a1 118 LGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGA 161 (288)
T ss_dssp HCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEEC
T ss_pred ccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeecc
Confidence 34678999999999999999887777777777678999999998
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=8.5e-07 Score=98.70 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=8.2
Q ss_pred ceEECCCCEeCCCCEEe
Q 037878 1336 LVLIGDGAVISEGALIQ 1352 (2280)
Q Consensus 1336 ~~~IG~~~~I~~~~~l~ 1352 (2280)
.++||++|.|+++|.|.
T Consensus 14 ~v~IG~~v~Ig~~vvI~ 30 (201)
T d2oi6a1 14 TLTHGRDVEIDTNVIIE 30 (201)
T ss_dssp EEEECSSCEECTTEEEE
T ss_pred eEEECCCCEECCCCEEC
Confidence 34455555555544444
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=4.7e-07 Score=82.69 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=32.6
Q ss_pred CEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceeecCEEECCCcEECCCCEECCCCEECCCCEECc
Q 037878 1318 AKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKVSVGPYAVIQKGSVIGEEAEVAP 1394 (2280)
Q Consensus 1318 a~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~~~i~Ig~~~~iG~~~~i~pg~~ig~~a~ig~ 1394 (2280)
++||++|.|++... ..+.++||+||.||++|.|. ..+||+++.|+++|+|. ++.||+|+.|||
T Consensus 15 v~IG~~~~I~~~~~-i~g~~~IG~~v~Ig~~~~i~------------~~~Ig~~~~I~~~s~i~-~~~Ig~~~~IGP 77 (78)
T d1fxja1 15 LTHGRDVEIDTNVI-IEGNVTLGHRVKIGTGCVIK------------NSVIGDDCEISPYTVVE-DANLAAACTIGP 77 (78)
T ss_dssp EEECSSCEECTTEE-EEEEEEECTTCEECTTCEEE------------SCEECTTCEECTTCEEE-SEEECTTCEESC
T ss_pred EEECCCCEECCccE-EeCCcEECCCCEECCCeEEe------------cCEECCCCEEcCCcEEE-CCEECCCCEECc
Confidence 45555555544332 12345555555555555553 13355555555555553 455555555555
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.23 E-value=2.7e-06 Score=85.31 Aligned_cols=52 Identities=29% Similarity=0.478 Sum_probs=40.1
Q ss_pred CCCccccc-cccccCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 2 DPGKSIDD-QFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
|..+++++ ++..+.. ..++++|||||..|+-.|..|++.|. +|+|+|+++++
T Consensus 5 d~~~v~~s~~~l~l~~---~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~~l 57 (119)
T d3lada2 5 DQDVIVDSTGALDFQN---VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMDKF 57 (119)
T ss_dssp CSSSEEEHHHHTSCSS---CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred CCCEEEchhHhhCccc---CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeeccc
Confidence 55556654 3333332 23689999999999999999999998 69999998775
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.23 E-value=2.7e-06 Score=85.25 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=33.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++|+|||||..|+-+|..|++.|. +|||+|+++++
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEI 57 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred CeEEEECCCccceeeeeeeccccc-EEEEEEeccee
Confidence 689999999999999999999998 69999998876
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.22 E-value=3.4e-07 Score=94.47 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=40.1
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALS 1653 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s 1653 (2280)
++||++|+|.. +.||++|.|+++|.+.+..... ..++++++++++++. ++||+|++|+++|
T Consensus 73 v~Ig~~~~I~~---------~iIg~~~~IG~g~~i~~~~~~~-----~~~~~~~~~~i~~g~-----vvIg~~~~I~~g~ 133 (135)
T d1yp2a1 73 IGIGKNCHIKR---------AIIDKNARIGDNVKIINKDNVQ-----EAARETDGYFIKSGI-----VTVIKDALIPSGI 133 (135)
T ss_dssp SEECTTCEEES---------EEECTTCEECTTCEECCSSCCS-----CEEEGGGTEEEETTE-----EEECTTCEECTTC
T ss_pred CEECcceEecc---------ceecCCCEECCCcEECCCcccc-----cceeeCCCEEECCCe-----EEECCCCEECcCc
Confidence 56777777752 6788888888888885332111 224555666555543 4578888888887
Q ss_pred cc
Q 037878 1654 VA 1655 (2280)
Q Consensus 1654 ~v 1655 (2280)
++
T Consensus 134 vI 135 (135)
T d1yp2a1 134 II 135 (135)
T ss_dssp BC
T ss_pred CC
Confidence 64
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=4.6e-06 Score=83.91 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=39.9
Q ss_pred CCCccccc-cccccCCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 2 DPGKSIDD-QFCKLHPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
|.+++++. ++..+.. ..++++|||||..|+-.|..|++.|. +|+|+|+++++
T Consensus 6 d~~~v~ts~~~~~l~~---~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~~~ 58 (122)
T d1v59a2 6 DEEKIVSSTGALSLKE---IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQI 58 (122)
T ss_dssp CSSSEECHHHHTTCSS---CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCCEEEehHHhhCccc---CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecccc
Confidence 44455543 3333332 23689999999999999999999998 69999998876
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=8.1e-07 Score=81.06 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=49.6
Q ss_pred CeeCCCceeccCCcccCCcceEECCCcEeCCCcEEeecccCCCceEeeCeEECCCcEEccCCeeCCCcEeCCCcEEcc
Q 037878 1574 AKIGRYCSIRAINPVSCPQQVTLGAGVHLGDFSRIIPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGA 1651 (2280)
Q Consensus 1574 ~~IG~~~~i~~~~~~~~~~~~~iG~~~~i~~~~~i~~~~~~~~~~~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~ 1651 (2280)
++||++|.|+.++.+ ...++||+||.|+++|.| ..++||+++.|+.++.+. ++.||++|.||+
T Consensus 15 v~IG~~~~I~~~~~i--~g~~~IG~~v~Ig~~~~i------------~~~~Ig~~~~I~~~s~i~-~~~Ig~~~~IGP 77 (78)
T d1fxja1 15 LTHGRDVEIDTNVII--EGNVTLGHRVKIGTGCVI------------KNSVIGDDCEISPYTVVE-DANLAAACTIGP 77 (78)
T ss_dssp EEECSSCEECTTEEE--EEEEEECTTCEECTTCEE------------ESCEECTTCEECTTCEEE-SEEECTTCEESC
T ss_pred EEECCCCEECCccEE--eCCcEECCCCEECCCeEE------------ecCEECCCCEEcCCcEEE-CCEECCCCEECc
Confidence 678888888877433 345788888888888888 557888888888888774 688888888886
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=3.4e-06 Score=84.18 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~~ 56 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDAP 56 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecchh
Confidence 3689999999999999999999998 69999998775
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.15 E-value=7.7e-06 Score=97.55 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=47.1
Q ss_pred EeeCeEECCCcEEccCCeeCCCcEeCCCcEEccCccccCCCccCCCcEEecCC
Q 037878 1619 IFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGSQ 1671 (2280)
Q Consensus 1619 ~~~~~~IG~~~~iG~~~~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G~P 1671 (2280)
..+.++|+++++|+.++.|.++++|++++.|++.+....+ ++..++..|++
T Consensus 263 i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~~~~~~--l~g~~~i~G~~ 313 (320)
T d2f9ca1 263 LDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIH--LRGPKVINGED 313 (320)
T ss_dssp ECSEEEECSSCEEESSEEECSEEEECSSCEEECCSSCCEE--ECSSEEECSSC
T ss_pred ECCceEECCCcEEcccCEEeCCCEECCCeEEEEecCCeEE--ccCCcEEcCcc
Confidence 3456899999999999999999999999999999999888 99999999988
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=4.4e-07 Score=103.72 Aligned_cols=43 Identities=37% Similarity=0.745 Sum_probs=39.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
|.+++||+|||||++||+||.+|++.|. +|+|+|+++.+||.|
T Consensus 2 m~~~yDviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~~~GG~~ 44 (233)
T d1v59a1 2 INKSHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTC 44 (233)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred CCcccCEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCcceEe
Confidence 5567999999999999999999999998 699999999999965
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.08 E-value=9.7e-07 Score=97.75 Aligned_cols=41 Identities=41% Similarity=0.827 Sum_probs=37.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++|+|||||++||+||++|+++|+++|+||||++++||..
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~ 44 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 44 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchh
Confidence 57899999999999999999999985599999999999944
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.08 E-value=9.9e-06 Score=80.64 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~i 57 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRI 57 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccc-cceeeehhccc
Confidence 4689999999999999999999998 69999998775
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.06 E-value=5.5e-06 Score=83.54 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=37.3
Q ss_pred HhHCCCceEeCcceEEEEEcCCccEEEEEe-CCCceEEEEeCEEEEc
Q 037878 196 SKYLPTEVHCNSEVLAIRRDSTTVGVDVKH-SNGECEVMEFDKIIIS 241 (2280)
Q Consensus 196 a~~lg~~I~l~t~V~~I~~~~~~v~V~v~t-~~G~~~~i~aD~VI~A 241 (2280)
.++.|.+|++|++|++|+.+++++.+.+.. ++|+.+++++|.|++|
T Consensus 76 l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA 122 (123)
T d1dxla2 76 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS 122 (123)
T ss_dssp HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred hhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence 345588999999999999988888777776 4455567899999986
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.04 E-value=6.2e-06 Score=84.34 Aligned_cols=39 Identities=33% Similarity=0.437 Sum_probs=35.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
...++|+|||||..|+-+|..|++.|. +|+|+|+++++.
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~~l 71 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARVL 71 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTT
T ss_pred ccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccccc
Confidence 345799999999999999999999998 699999988763
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.98 E-value=2.2e-06 Score=99.56 Aligned_cols=41 Identities=32% Similarity=0.505 Sum_probs=35.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
|..++||+|||||++||+||++|+++|+ +|+|+||+...+|
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~~~~ 43 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPEDV 43 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTTCT
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCCCCC
Confidence 3456799999999999999999999999 7999999764444
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.97 E-value=1.7e-06 Score=97.84 Aligned_cols=41 Identities=39% Similarity=0.760 Sum_probs=38.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++||+||+++++.|. +|+|+|+++++||.|
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~~~GG~~ 42 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGALGGTC 42 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSCCSH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCCCCee
Confidence 46899999999999999999999998 699999999999955
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=1.2e-06 Score=100.31 Aligned_cols=40 Identities=38% Similarity=0.439 Sum_probs=36.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCC------ceEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYR------NVTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~------~VtVlEk~~riGG~~ 61 (2280)
++|+|||||+|||+||++|+++|+. +|+||||.+++||.+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~ 48 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV 48 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee
Confidence 5899999999999999999999841 599999999999954
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.95 E-value=2.1e-06 Score=105.11 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=44.8
Q ss_pred ccccccccCCCCC-CCCeEEEECccHHHHHHHHHHHh------CCCCceEEEecCCCCCceEEE
Q 037878 7 IDDQFCKLHPCLP-VNTRIGIVGGGPSGLSTAYALAK------LGYRNVTLLEKYHTVGGMCES 63 (2280)
Q Consensus 7 ~~~~~~~~~~~~~-~~~dV~IIGaGisGLsAA~~La~------~G~~~VtVlEk~~riGG~~~t 63 (2280)
+++.+..+.+..+ +++||+|||||+|||+||+.|+| +|+ +|+||||...+|.++.+
T Consensus 17 ~~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~~pG~k~~~ 79 (380)
T d2gmha1 17 QDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAHIGAHTLS 79 (380)
T ss_dssp SCGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSSTTTTCCC
T ss_pred cCccccccCcccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCCCCCCCccc
Confidence 5555555554332 35899999999999999999998 899 69999999999886543
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.94 E-value=3e-06 Score=96.54 Aligned_cols=43 Identities=35% Similarity=0.542 Sum_probs=39.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
....++|+|||||++||+||..|+++|+ +|+|+|+++++||..
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~~GG~~ 88 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIGGHL 88 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTH
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccccCCcc
Confidence 3456899999999999999999999999 799999999999954
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=97.93 E-value=8e-06 Score=98.62 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=35.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
..||+|||||+|||+||++|+++|. +|+|+||....||
T Consensus 5 ~~DVvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~~~~g 42 (336)
T d2bs2a2 5 YCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPVKRS 42 (336)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCGGGS
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCCCCC
Confidence 4799999999999999999999999 6999999877766
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=97.91 E-value=2e-06 Score=100.95 Aligned_cols=42 Identities=33% Similarity=0.552 Sum_probs=37.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-CCCCceEEEecCCCCCceEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAK-LGYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~-~G~~~VtVlEk~~riGG~~~ 62 (2280)
.++||+|||||++||+||++|++ .|+ +|+|+||++++||.+.
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~~~GG~~~ 74 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVSPGGGAW 74 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSSCCTTTT
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCCCCCCcee
Confidence 35799999999999999999987 599 6999999999999653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.91 E-value=1e-05 Score=95.41 Aligned_cols=35 Identities=37% Similarity=0.630 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
+.||+|||||++||++|..|+++|+ +|+||||++.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~ 36 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP 36 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 4689999999999999999999999 6999999864
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=97.88 E-value=1.1e-05 Score=81.33 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=37.6
Q ss_pred hHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 197 KYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 197 ~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
++.|.++++|++|++++.+++++.+.+++.+|+.++++||.|++|
T Consensus 78 ~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A 122 (125)
T d1ojta2 78 EYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVA 122 (125)
T ss_dssp GGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEEC
T ss_pred HHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEe
Confidence 345778999999999999888877777777775567999999997
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=97.86 E-value=2.5e-06 Score=97.00 Aligned_cols=41 Identities=41% Similarity=0.900 Sum_probs=37.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
.++||+|||||++||+||.+|+++|. +|+|+|+++.+||.|
T Consensus 5 ~dyDviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~~~GG~~ 45 (229)
T d1ojta1 5 AEYDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTLGGVC 45 (229)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSCSSHHH
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccCCCCCee
Confidence 35899999999999999999999998 699999999999954
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.86 E-value=8.6e-06 Score=99.70 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.||+|||+|++|+.+|++|+++|+ +|+|||+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcC-eEEEEecCC
Confidence 489999999999999999999998 699999953
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.85 E-value=3.5e-05 Score=76.74 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 192 WQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 192 ~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
+++..++.|.++++|++|++|+.++++. +.+++++| ++++||.||+|
T Consensus 70 l~~~l~~~GV~v~~~~~v~~ie~~~~~~-~~v~~~~G--~~i~~D~Vi~A 116 (117)
T d1aoga2 70 LTKQLTANGIQILTKENPAKVELNADGS-KSVTFESG--KKMDFDLVMMA 116 (117)
T ss_dssp HHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEETTS--CEEEESEEEEC
T ss_pred HHHHHHhcCcEEEcCCEEEEEEEcCCCe-EEEEECCC--cEEEeCEEEEe
Confidence 3334455689999999999999766653 46788899 57899999997
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=4.2e-06 Score=95.15 Aligned_cols=38 Identities=37% Similarity=0.487 Sum_probs=34.8
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCce
Q 037878 22 TRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~ 60 (2280)
++|+|||||+|||+||.+|+++ |+ +|+|||+.+++||.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~~gG~ 41 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGL 41 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCce
Confidence 5899999999999999999876 66 69999999999994
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=1.3e-05 Score=95.10 Aligned_cols=40 Identities=33% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++.||+|||||+|||+||+.+++.| + |+|+||.+..||.+
T Consensus 6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~-V~llEK~~~~gG~s 45 (305)
T d1chua2 6 HSCDVLIIGSGAAGLSLALRLADQH-Q-VIVLSKGPVTEGST 45 (305)
T ss_dssp EECSEEEECCSHHHHHHHHHHTTTS-C-EEEECSSCTTC---
T ss_pred ccCCEEEECccHHHHHHHHHhhcCC-C-EEEEECCCCCCCch
Confidence 3589999999999999999999887 4 99999999988853
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=9.1e-06 Score=96.66 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=34.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||+|+|||+||+.++++ |. +|+|+||....||.
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~-~V~lleK~~~~~g~ 45 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNA-KIALISKVYPMRSH 45 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTC-CEEEEESSCGGGSG
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCC-EEEEEECCCCCCCc
Confidence 57999999999999999999987 55 59999999887774
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.78 E-value=2.6e-05 Score=86.16 Aligned_cols=38 Identities=39% Similarity=0.425 Sum_probs=33.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC-CCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY-HTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~-~riGG 59 (2280)
.+||+|||||+||+.||++++++|. ++.|+|++ +.+|+
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~-ktllit~~~~~ig~ 40 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQSLDAVMM 40 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGGTTC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEEeccchhcc
Confidence 4899999999999999999999999 59999997 45554
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=97.77 E-value=2.5e-05 Score=78.21 Aligned_cols=38 Identities=34% Similarity=0.470 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
...++|+|||||..|+-+|..|+++|. +|+++|+++++
T Consensus 28 ~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~~ 65 (121)
T d1d7ya2 28 RPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRL 65 (121)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST
T ss_pred hcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecccc
Confidence 345799999999999999999999998 69999998765
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=5e-06 Score=93.50 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=36.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+++||+|||||++|++||.+|++.|. +|+|+|+ +.+||.|
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~-~~~GGtc 40 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQ-KCALIEA-KELGGTC 40 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTC-CEEEEES-SCTTHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEec-cCcCCeE
Confidence 36899999999999999999999998 6999999 5699954
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=97.74 E-value=7.1e-05 Score=75.11 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~~ 65 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRP 65 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST
T ss_pred CCEEEEECChHHHHHHHHHhhccce-EEEEEEecCcc
Confidence 4689999999999999999999998 69999998765
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=97.73 E-value=8e-06 Score=92.44 Aligned_cols=39 Identities=33% Similarity=0.595 Sum_probs=35.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+++||+|||||+|||+||.+|+++|. +|+|+|+....||
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~-~V~viE~~~~~~~ 40 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYKGKEG 40 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCBCTTS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecccCCCc
Confidence 57999999999999999999999998 6999999876665
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.72 E-value=0.00014 Score=86.37 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=28.8
Q ss_pred eCeEECCCcEEccCC-eeCCCcEeCCCcEEccCccccCCCccCCCcEEec
Q 037878 1621 GKVEVQDNSVIGSQS-LVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIG 1669 (2280)
Q Consensus 1621 ~~~~IG~~~~iG~~~-~v~~g~~ig~~~~vg~~s~v~~~~~v~~~~~~~G 1669 (2280)
+.+.||+++.|+.++ .+..+++|++++.|+.++.|..+-.+..++...+
T Consensus 246 ~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a 295 (320)
T d2f9ca1 246 HHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIA 295 (320)
T ss_dssp TEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEEC
T ss_pred CceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEE
Confidence 445666666664443 4444566777777777777766644555555543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.71 E-value=4e-05 Score=76.08 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=32.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++++|||||+.|+-+|..|++.|. +|+|+|+.+++
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~~i 56 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARERI 56 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhccc-ceEEEeeeccc
Confidence 689999999999999999999998 69999998776
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.70 E-value=6.7e-05 Score=74.71 Aligned_cols=47 Identities=9% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHHHHhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEc
Q 037878 192 WQKLSKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIIS 241 (2280)
Q Consensus 192 ~~~la~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A 241 (2280)
+++..++.|.++++|++|++|+.++++. ..+...+| +++.||.||+|
T Consensus 68 ~~~~l~~~GI~v~~~~~v~~i~~~~~g~-~~v~~~~g--~~i~~D~Vi~a 114 (117)
T d1feca2 68 LTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESG--AEADYDVVMLA 114 (117)
T ss_dssp HHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTS--CEEEESEEEEC
T ss_pred HHHHHhhCcEEEEcCCEEEEEEECCCCE-EEEEECCC--CEEEcCEEEEe
Confidence 3344456688999999999999877765 46778888 57899999997
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.67 E-value=0.00016 Score=88.04 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
.+.||||||+|++|+.+|++|+++|+ +|+|||+.
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG 39 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGI-PTQIVEMG 39 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 46799999999999999999999998 69999995
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00011 Score=73.92 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=32.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~~ 57 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHDKV 57 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecccc
Confidence 689999999999999999999998 69999998775
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=7.6e-06 Score=89.86 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=34.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
+++||+|||||++||+||.+|++.|. +|+|+|++++.|.
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~~~g~ 42 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKGGQ 42 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSSTTGG
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeeccccc
Confidence 45799999999999999999999999 6999999777554
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.59 E-value=0.00015 Score=72.57 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
.++|+|||||..|+-.|..|++.|. +|+++|+++++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~~ 57 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEPL 57 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhcch-hheEeeccchh
Confidence 4789999999999999999999998 69999997765
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.57 E-value=0.00021 Score=86.40 Aligned_cols=39 Identities=44% Similarity=0.479 Sum_probs=34.5
Q ss_pred CCeEEEECccHHHHHHHHHHHh----CCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAK----LGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~----~G~~~VtVlEk~~riGG~ 60 (2280)
+.||+|||||+|||+||+.|++ +|. +|+|+||....||.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~-~V~vieK~~~~gg~ 63 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAVERSG 63 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCTTTCS
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcC-EEEEEeCCCCCCCh
Confidence 5799999999999999999975 688 69999998887764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=1.2e-05 Score=95.78 Aligned_cols=42 Identities=38% Similarity=0.509 Sum_probs=37.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCCceEEEecCCCCCceEE
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKL--GYRNVTLLEKYHTVGGMCE 62 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~--G~~~VtVlEk~~riGG~~~ 62 (2280)
.++||+|||||++||+||++|+++ |+ +|+|+|+++.+||+++
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGGGSW 92 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCTTTT
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEEcCCCCcceeE
Confidence 357999999999999999999964 88 6999999999999653
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00014 Score=74.37 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=36.0
Q ss_pred HhHCCCceEeCcceEEEEEcCCccEEEEEeCCCceEEEEeCEEEEcC
Q 037878 196 SKYLPTEVHCNSEVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISG 242 (2280)
Q Consensus 196 a~~lg~~I~l~t~V~~I~~~~~~v~V~v~t~~G~~~~i~aD~VI~A~ 242 (2280)
.++.|.++++|+.|++|+.+++++ .+++++| +++.||.||+|+
T Consensus 93 l~~~GV~~~~~~~V~~i~~~~~~~--~v~l~~G--~~i~aD~Vi~A~ 135 (137)
T d1m6ia2 93 VRREGVKVMPNAIVQSVGVSSGKL--LIKLKDG--RKVETDHIVAAV 135 (137)
T ss_dssp HHTTTCEEECSCCEEEEEEETTEE--EEEETTS--CEEEESEEEECC
T ss_pred HHhCCcEEEeCCEEEEEEecCCEE--EEEECCC--CEEECCEEEEee
Confidence 345689999999999999887754 6778899 589999999983
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.50 E-value=1.7e-05 Score=89.28 Aligned_cols=41 Identities=37% Similarity=0.729 Sum_probs=36.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
..++|++|||||++|++||.++++.|. +|+|+|++ .+||.|
T Consensus 3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~-~~GG~c 43 (220)
T d1lvla1 3 TIQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ-ALGGTC 43 (220)
T ss_dssp CEECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS-CTTHHH
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC-CCCCcc
Confidence 346899999999999999999999998 69999985 689854
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.49 E-value=2.1e-05 Score=88.62 Aligned_cols=39 Identities=44% Similarity=0.779 Sum_probs=34.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
++||+|||||++||+||.++++.|. +|+|+|+ +.+||.|
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk-~~~GG~~ 41 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEK-GNLGGVC 41 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SCTTHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEec-CCCCcce
Confidence 5899999999999999999999998 6999999 4567744
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.47 E-value=2.9e-05 Score=88.36 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
+.+||+|||||++||+||.++++.|.++|+|+|+..
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~ 37 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM 37 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence 468999999999999999999999876799999853
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.46 E-value=3.5e-05 Score=89.00 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=40.9
Q ss_pred CCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 15 ~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
....+.++||+|||||++|+.||..|++.|. +|+|+|+.+.+||.|
T Consensus 36 ~~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~~lGG~c 81 (261)
T d1mo9a1 36 DENDPREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPFLGGSC 81 (261)
T ss_dssp CTTCCSCBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSCHH
T ss_pred CCCCCccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCcccccc
Confidence 3445567899999999999999999999998 699999999999955
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.45 E-value=2.9e-05 Score=88.28 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=34.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
++||+|||||++||+||.++++.|. +|+|+|+....|.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~-kV~viE~~~~~~~ 40 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDK-KVMVLDFVTPTPL 40 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCC-CEEEECCCCCCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCc
Confidence 5899999999999999999999998 5999999776554
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=3.2e-05 Score=84.11 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=33.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+||+|||||++||+||.++++.|. +|+|+|+ +.||++
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~-~v~iie~--~~gg~~ 38 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGI-RTGLMGE--RFGGQI 38 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTC-CEEEECS--STTGGG
T ss_pred CcEEEECcCHHHHHHHHHHHHcCC-eEEEEEE--ecCCcc
Confidence 699999999999999999999998 6999997 468754
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=3.5e-05 Score=86.58 Aligned_cols=38 Identities=34% Similarity=0.642 Sum_probs=34.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
++||+|||||++|++||.++++.|. +|+|+|+ +.+||-
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~-kV~vIEk-~~~GG~ 40 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGA-RAAVVES-HKLGGT 40 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SCTTHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC-EEEEEec-cCCCCc
Confidence 5899999999999999999999998 6999998 667773
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.38 E-value=3.5e-05 Score=88.96 Aligned_cols=38 Identities=34% Similarity=0.677 Sum_probs=35.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~ 61 (2280)
+||+|||||++|++||.++++.|. +|+|+|+ +.+||.|
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~-~V~liE~-~~~GGtc 39 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNA-KVALVEK-SRLGGTC 39 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SSTTHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCC-eEEEEec-CCCCCeE
Confidence 699999999999999999999998 6999998 5689965
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.36 E-value=3.4e-05 Score=87.94 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=34.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+++||+|||||+||++||.++++.|.++|+|+|+....
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~ 39 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH 39 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence 57899999999999999999999986569999997753
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.31 E-value=0.00057 Score=68.06 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=29.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
++++|||||..|+-.|..|++.|. +|+|+|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence 579999999999999999999998 69999974
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.29 E-value=5.9e-05 Score=92.21 Aligned_cols=41 Identities=29% Similarity=0.505 Sum_probs=35.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
|..++||||||+|++|+++|.+|+++|+ +|+|||+....++
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~-kVlvLEaG~~~~~ 41 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEIDSG 41 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCSS
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCC-eEEEEecCCCCCC
Confidence 4567899999999999999999999998 6999999655443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.21 E-value=0.00016 Score=73.86 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=52.1
Q ss_pred CCEECCCcEECccccCCCCceEECCCCEeCCCCEEeeccccCCceee-------------cCEEECCCcEECCCCEECCC
Q 037878 1317 GAKLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSF-------------QPIKIARKVSVGPYAVIQKG 1383 (2280)
Q Consensus 1317 Ga~Ig~~v~i~~~~~~~~~~~~IG~~~~I~~~~~l~~~~~~~~~~~~-------------~~i~Ig~~~~iG~~~~i~pg 1383 (2280)
.+.||++|.|....+ ....||++|.|++++.|....+-++.... ..++||++|+|+ +++|..+
T Consensus 14 ~s~Ig~g~~I~~~~i---~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~-~~iIg~~ 89 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKI---HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK-RAIIDKN 89 (135)
T ss_dssp EEEECTTCEEEEEEE---ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE-SEEECTT
T ss_pred eCEECCCCEEeCCEE---eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEec-cceecCC
Confidence 356899999964333 23568999999999988766654443221 235677777775 6666667
Q ss_pred CEECCCCEECcCCccCC
Q 037878 1384 SVIGEEAEVAPLQKSEG 1400 (2280)
Q Consensus 1384 ~~ig~~a~ig~~s~v~~ 1400 (2280)
++||+|+.++.+..+.+
T Consensus 90 ~~IG~g~~i~~~~~~~~ 106 (135)
T d1yp2a1 90 ARIGDNVKIINKDNVQE 106 (135)
T ss_dssp CEECTTCEECCSSCCSC
T ss_pred CEECCCcEECCCccccc
Confidence 77777766666555443
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.16 E-value=8.8e-05 Score=81.14 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
++||+|||||++||+||.+|+++|. +|+|+|+....
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~~~~ 40 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGWMAN 40 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSBT
T ss_pred cceEEEECCCHHHHHHHHHHHHcCC-cEEEEEeeccc
Confidence 5799999999999999999999999 59999986654
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=6e-05 Score=90.30 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=36.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCce
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~ 60 (2280)
++.||+|||||+|||+||+.++++|. +|+|+||.+..||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~-~V~lleK~~~~gg~ 45 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFPTRSH 45 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTC-CCEEECSSCGGGSG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCC-eEEEEeCCCCCCCc
Confidence 35799999999999999999999998 69999999988874
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=96.95 E-value=0.0002 Score=86.65 Aligned_cols=37 Identities=35% Similarity=0.507 Sum_probs=32.6
Q ss_pred CCCeEEEECccHHHHHHHHHHH-----hCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALA-----KLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La-----~~G~~~VtVlEk~~ri 57 (2280)
+.+||+|||||++||++|..|+ ++|+ +|+||||++.+
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~~~ 47 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCCCC
Confidence 3589999999999999999996 5799 69999998755
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.95 E-value=0.0013 Score=71.90 Aligned_cols=43 Identities=37% Similarity=0.476 Sum_probs=33.7
Q ss_pred HCCCceEeCcceEEEEEcCCccEEEEEe-CCCceEEEEeCEEEEcC
Q 037878 198 YLPTEVHCNSEVLAIRRDSTTVGVDVKH-SNGECEVMEFDKIIISG 242 (2280)
Q Consensus 198 ~lg~~I~l~t~V~~I~~~~~~v~V~v~t-~~G~~~~i~aD~VI~A~ 242 (2280)
+.|.+++++++|++|+.++++ +++++ .+|+..++.+|.+|+|+
T Consensus 68 ~~gi~v~~~~~V~~i~~~~~~--v~~~~~~~g~~~~~~~D~li~a~ 111 (198)
T d1nhpa1 68 SRGVNVFSNTEITAIQPKEHQ--VTVKDLVSGEERVENYDKLIISP 111 (198)
T ss_dssp HTTCEEEETEEEEEEETTTTE--EEEEETTTCCEEEEECSEEEECC
T ss_pred HCCcEEEEeeceeeEeecccc--ceeeecccccccccccceeeEee
Confidence 457899999999999988774 45553 56655678999999983
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00019 Score=79.65 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=32.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTV 57 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~ri 57 (2280)
+.+.+++|||||++|+.+|..|++.|.. +|++++++.+.
T Consensus 2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~ 41 (213)
T d1m6ia1 2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL 41 (213)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence 4567899999999999999999998762 59999886543
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.86 E-value=0.00021 Score=80.64 Aligned_cols=39 Identities=38% Similarity=0.630 Sum_probs=33.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCC--ceEEEecCCCCCceE
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYR--NVTLLEKYHTVGGMC 61 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~--~VtVlEk~~riGG~~ 61 (2280)
.||+|||||++|++||+++++.|.+ +|+|+|+ +.+||.|
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~c 42 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAA 42 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCcee
Confidence 4899999999999999998877642 6999998 6789854
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.83 E-value=9.6e-05 Score=84.13 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=29.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
++|+|||||++||++|++|+++|+ +|+|+|+..
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~-~v~v~e~~~ 33 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYH-SVLQPLDVK 33 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHT-TTSSSCEEE
T ss_pred CEEEEECchHHHHHHHHHHHHCCC-CceEEeeee
Confidence 579999999999999999999998 588888743
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.36 E-value=0.0013 Score=65.53 Aligned_cols=37 Identities=35% Similarity=0.447 Sum_probs=33.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVG 58 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riG 58 (2280)
.++|+|||||.+|+-+|..|++.|. +|+|+|+++++-
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~l~ 68 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAMFL 68 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSCCT
T ss_pred CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecccccc
Confidence 3689999999999999999999998 699999988763
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.30 E-value=0.035 Score=67.14 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=43.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCCCceEEEEee
Q 037878 18 LPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCESVEI 66 (2280)
Q Consensus 18 ~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~riGG~~~t~~~ 66 (2280)
.+...||+|+|-|+.=--.|..|++.|. +|+-+|+++.-||...|..+
T Consensus 3 lP~e~DVII~GTGL~ESILAaAlSr~Gk-kVLHiD~N~yYGg~~aSl~~ 50 (491)
T d1vg0a1 3 LPSDFDVIVIGTGLPESIIAAACSRSGQ-RVLHVDSRSYYGGNWASFSF 50 (491)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECH
T ss_pred CCCccCEEEECCChHHHHHHHHHHhcCC-EEEEecCCCcCCCcccceeH
Confidence 4668999999999999999999999998 69999999999998888763
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=96.28 E-value=0.0011 Score=79.71 Aligned_cols=33 Identities=39% Similarity=0.514 Sum_probs=31.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
++|+||||||.+|+.+|.+|+++|+ +|+|||+.
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~-~VlvLEaG 34 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERG 34 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC-eEEEEEcc
Confidence 5899999999999999999999998 69999995
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=96.07 E-value=0.0017 Score=69.50 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=31.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCC-ceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYR-NVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~-~VtVlEk~~ri 57 (2280)
++|+|||||.+|+.+|.+|++.|.+ +|+|+|++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~ 39 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY 39 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence 6899999999999999999998852 69999997653
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0026 Score=59.77 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
+.++|+|||.|.+|+++|.+|+++|. +|+++|.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC
Confidence 35789999999999999999999998 6999998654
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=95.97 E-value=0.0024 Score=77.68 Aligned_cols=36 Identities=31% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
++|+||||||.||+..|.+|++.|..+|+|||+...
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 589999999999999999999998326999999754
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=95.62 E-value=0.0019 Score=77.29 Aligned_cols=40 Identities=35% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCCCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 15 HPCLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 15 ~~~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.+.+...+|+||||||.+|+..|.+|+++ + +|+|||+.+.
T Consensus 20 ~~~~~~~YD~IIVGsG~aG~vlA~rLae~-~-kVLvLEaG~~ 59 (351)
T d1ju2a1 20 DLELEGSYDYVIVGGGTSGCPLAATLSEK-Y-KVLVLERGSL 59 (351)
T ss_dssp GSCSEEEEEEEEECCSTTHHHHHHHHTTT-S-CEEEECSSBC
T ss_pred CccccCCccEEEECccHHHHHHHHHhcCC-C-CEEEEecCCC
Confidence 34444568999999999999999999987 6 6999999753
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=95.46 E-value=0.0035 Score=76.06 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC-CCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLG-YRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G-~~~VtVlEk~~ 55 (2280)
++|+||||||.+|+..|.+|++.| + +|+|||+..
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~-~VLvLEaG~ 51 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNI-SVLVIESGS 51 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTC-CEEEEESSC
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCC-eEEEECCCC
Confidence 479999999999999999999986 6 699999964
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.96 E-value=0.0083 Score=64.13 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+.||+|||||.+|+.+|..|++.|. +|+|+|..++.
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~ 38 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDAT 38 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCcc
Confidence 5689999999999999999999998 69999987654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.69 E-value=0.011 Score=63.26 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
+++|+|||||..|++.|..|+++|+ +|+++++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 3689999999999999999999999 799999864
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.51 E-value=0.008 Score=64.30 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+.+|+|||||.+|+.+|..|++.|. +|+|++.+++.
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~ 38 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEA 38 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSC
T ss_pred CCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEeccc
Confidence 4569999999999999999999998 58888876554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.47 E-value=0.012 Score=62.61 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
.++|+|||||..|.++|.+|.++|+ +|+|++++..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLE 36 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChH
Confidence 4789999999999999999999999 6999998753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.26 E-value=0.014 Score=61.22 Aligned_cols=33 Identities=36% Similarity=0.648 Sum_probs=29.0
Q ss_pred eEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 23 dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
+|+|||||.+|+.+|..|++ +. +|+|+|++++.
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~~~~ 34 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEPVP 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TS-EEEEECSSSSC
T ss_pred eEEEECCcHHHHHHHHHHHc-CC-CEEEEeccccc
Confidence 79999999999999999976 55 69999987654
|
| >d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FAD-linked reductases, C-terminal domain superfamily: FAD-linked reductases, C-terminal domain family: L-aminoacid/polyamine oxidase domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.94 E-value=0.042 Score=52.54 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=63.6
Q ss_pred cCcccCCceeEEEecCCCCCCCCCCcceeEEee--cCCCcEEEEec-CCC-----CCCChHHHHHHHHHHHHhh---cCc
Q 037878 293 TGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFF--ADTDIFLFWSY-GNS-----VDITGPTVTEVAIKTVENM---GGV 361 (2280)
Q Consensus 293 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-g~~-----~~~s~~e~~~~i~~~L~~~---~~~ 361 (2280)
..++. |.+|+|+.|..++...+|..+.+.+|. .+.+..+++.+ |+. .+++|+++.+.++++|+++ ...
T Consensus 15 ~~~~~-~~GfG~LVP~~e~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a~~dL~~~lgi~~~ 93 (108)
T d2ivda2 15 GTLPA-PDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTAR 93 (108)
T ss_dssp TSSCC-CCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHCCC-CCceEEEccCCCCCeEEEEEEEccccccccCCCCEEEEEEeCCCCCcccccCCHHHHHHHHHHHHHHHhCCCCC
Confidence 44543 689999999999888988888777765 34454444433 433 4578999999999999997 345
Q ss_pred cceEEEeecCCCCcc
Q 037878 362 IENVVLQRRFKYFPH 376 (2280)
Q Consensus 362 p~~~~~~~~~~~~p~ 376 (2280)
|....+.+|...+||
T Consensus 94 P~~~~v~rw~~aiPQ 108 (108)
T d2ivda2 94 PSFTRVFRWPLGIPQ 108 (108)
T ss_dssp CSEEEEEEESSCCBC
T ss_pred CcEEEeeECCCCcCc
Confidence 999999999998886
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.023 Score=59.43 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=32.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
|+|+|||+|..|...|.+|++.|+ +|+++.++++-
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHH
Confidence 589999999999999999999999 79999998763
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.24 E-value=0.048 Score=55.85 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=35.5
Q ss_pred ccccCCCCC-CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCC
Q 037878 11 FCKLHPCLP-VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHT 56 (2280)
Q Consensus 11 ~~~~~~~~~-~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~r 56 (2280)
++......+ ..++|+|||||-+|+=+|..|.+.|.++|+++++++.
T Consensus 34 ~~~~~~~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~ 80 (153)
T d1gtea3 34 MCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF 80 (153)
T ss_dssp TBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred CCcccCccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence 343333333 3568999999999999999999999767999987653
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=92.35 E-value=0.045 Score=55.49 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=34.2
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCC-CceEEEecCC
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKYH 55 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~-~~VtVlEk~~ 55 (2280)
+|+++++|+|||+|--|.+.|+.|+.+|. .++.++|.+.
T Consensus 1 sm~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 1 SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp CBTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 47788899999999999999999999985 3699999754
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.21 E-value=0.054 Score=55.82 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=34.2
Q ss_pred CCCCeEEEE--CccHHHHHHHHHHHhCCCCceEEEecCCCCCc
Q 037878 19 PVNTRIGIV--GGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59 (2280)
Q Consensus 19 ~~~~dV~II--GaGisGLsAA~~La~~G~~~VtVlEk~~riGG 59 (2280)
...+.|+|| |||..|+.+|-.|+++|. +|+|+|+.++++-
T Consensus 37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~~~~~ 78 (156)
T d1djqa2 37 KIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVHLANY 78 (156)
T ss_dssp CCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSCTTTH
T ss_pred ccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCcccc
Confidence 345567776 999999999999999998 6999999988753
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.02 E-value=0.04 Score=58.72 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 17 CLPVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 17 ~~~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.++..++|+|||||.-|.+.|..|++.|+ +|+++.++.
T Consensus 3 ~~~~m~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~ 40 (189)
T d1n1ea2 3 ELLYLNKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNE 40 (189)
T ss_dssp CCCCEEEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCH
T ss_pred ccceeceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecH
Confidence 34555689999999999999999999998 699998753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.97 E-value=0.09 Score=52.37 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
|+|+|+|+|--|...|..|.++|+ +|+++|++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK 33 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CcceecCCh
Confidence 589999999999999999999998 799999964
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.82 E-value=0.11 Score=53.14 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
...+|+|||||.+|+.|+..+++.|- +|+++|.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~ 64 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN 64 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCc
Confidence 35799999999999999999999998 69999985
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.53 E-value=0.078 Score=57.18 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=30.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
|+|+|||.|.-||..|..|+++|+ +|+.+|.+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS 33 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCH
Confidence 579999999999999999999999 699999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.11 Score=55.22 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
++|+|||||..|..-|+.++++|+ +|+++|.+.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 689999999999999999999999 699999854
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=90.08 E-value=0.14 Score=52.35 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=32.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.++++|+|||+|--|.+.|+.|+..++.++++++.+.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 3467999999999999999999999976799998654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=89.81 E-value=0.11 Score=55.13 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=30.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
++|+|||||..|..-|..++.+|+ +|+++|.+.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINE 37 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 579999999999999999999999 699999853
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.22 E-value=0.14 Score=50.95 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=30.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
++++|||+|-.|...|..|.+.|+ +|+++|++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcH
Confidence 479999999999999999999999 699999863
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=89.20 E-value=0.18 Score=51.46 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=30.5
Q ss_pred CCeEEEEC-ccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVG-GGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIG-aGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
.++|+||| .|.-|.+-|..|+++|+ +|++++++.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGY-PISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccc
Confidence 35899999 69999999999999999 699999854
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.72 E-value=0.18 Score=52.05 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=31.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
..+|+|||||.+|+.||......|- +|+++|.+.
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRA 62 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccH
Confidence 4699999999999999999999998 699999864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=88.30 E-value=0.17 Score=52.31 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=30.3
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
|+|.|||.|.-|.+-|..|+++|+ +|++++++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 579999999999999999999999 699999863
|
| >d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FAD-linked reductases, C-terminal domain superfamily: FAD-linked reductases, C-terminal domain family: L-aminoacid/polyamine oxidase domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=87.65 E-value=0.28 Score=46.83 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=59.2
Q ss_pred EeecCcccCCceeEEEecCCCCC---CCCCCcceeEEee--cCCCcEEEEec-CCC-----CCCChHHHHHHHHHHHHhh
Q 037878 290 LKITGLEHLPVGFYYFGEYMDDP---ATIGHPVAMQKFF--ADTDIFLFWSY-GNS-----VDITGPTVTEVAIKTVENM 358 (2280)
Q Consensus 290 ~~~~~l~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~-g~~-----~~~s~~e~~~~i~~~L~~~ 358 (2280)
+..+.++..+.+|+|+.|..+++ ..+|..+.+.+|. .+.+..+++.+ |+. .+.+|+++.+.++++|+++
T Consensus 12 ~~~~~~~~~~~GfG~LVP~~e~~~g~~~lg~~f~S~~fp~r~p~~~~ll~~~~Gg~~~~~~~~~~d~~l~~~a~~dl~~~ 91 (112)
T d1seza2 12 FKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQL 91 (112)
T ss_dssp EEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred EchHHcCCCCCceEEEeCCcccCCCceEEEEEEecccCCCcCCCCcEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHH
Confidence 33445555678999999988643 4667666666665 23444433333 333 4578999999999999997
Q ss_pred c---CccceEEEeecCCCCc
Q 037878 359 G---GVIENVVLQRRFKYFP 375 (2280)
Q Consensus 359 ~---~~p~~~~~~~~~~~~p 375 (2280)
. ..|....+.+|...+|
T Consensus 92 lgi~~~P~~~~v~rw~~aiP 111 (112)
T d1seza2 92 LGAEGEPTYVNHLYWSKAFP 111 (112)
T ss_dssp HCBCSCCSSEEEEEEEEEEE
T ss_pred hCCCCCccEEEEEECCcccC
Confidence 3 4588888888876655
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.50 E-value=0.17 Score=53.24 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=28.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEec
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk 53 (2280)
|+|+|||||.-|.+-|..|++.|+ +|+++.+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEe
Confidence 589999999999999999999998 7999865
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=84.66 E-value=0.35 Score=48.44 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=30.3
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
++|+|||+|--|.++|+.|+.++..++.+++.+.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~ 35 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence 6899999999999999999999876799998644
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.19 E-value=0.41 Score=45.37 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=30.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
..++|+|||+|.||+-.|..|++.+. +|++.-+++
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~r~ 65 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLLG 65 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEecC
Confidence 46899999999999999999999886 577776654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.75 E-value=0.59 Score=47.48 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCC-CceEEEecC
Q 037878 19 PVNTRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKY 54 (2280)
Q Consensus 19 ~~~~dV~IIGaGisGLsAA~~La~~G~-~~VtVlEk~ 54 (2280)
+++.+|+|||+|--|-+.|+.|..+|. +++.+++.+
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~ 53 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDAD 53 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 455689999999999999999999986 369999875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=83.62 E-value=0.46 Score=49.04 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
.+++|+|||+|-++-++++.|++.|.++|+|+-|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence 46789999999999999999999998679999875
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=83.07 E-value=0.5 Score=46.18 Aligned_cols=37 Identities=22% Similarity=0.506 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||||-+.+-.|.+|++-.. +|+++-+++..
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~-~V~li~r~~~~ 62 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRDGF 62 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-cEEEEeecccc
Confidence 46899999999999999999999886 69999887643
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.58 E-value=0.55 Score=47.29 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=30.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-CceEEEecC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKY 54 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~-~~VtVlEk~ 54 (2280)
..++|+|||||-.|.+.|+.|..+|. +++.+++.+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 45689999999999999999999886 359999864
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=81.95 E-value=0.57 Score=45.73 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecCCCC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTV 57 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ri 57 (2280)
..++|+|||||-+.+-+|.+|++-.. +|+++-+++..
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~-~V~li~r~~~~ 65 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPEM 65 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBS-EEEEECSSSSC
T ss_pred CCceEEEEeCCHHHHHHHHhhhccCC-ceEEEeccccc
Confidence 46899999999999999999999876 69999987654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.93 E-value=0.47 Score=48.00 Aligned_cols=32 Identities=38% Similarity=0.686 Sum_probs=29.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEe
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLE 52 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlE 52 (2280)
+.++|+|||||..|+.-|..|.+.|. +|+|+-
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVva 43 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVS 43 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 46899999999999999999999998 699993
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=81.76 E-value=0.78 Score=46.60 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-CceEEEecC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGY-RNVTLLEKY 54 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~-~~VtVlEk~ 54 (2280)
++++|+|||+|--|-++|+.|..+|. .++.+++.+
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 35799999999999999999999997 469999875
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.60 E-value=0.69 Score=46.55 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 21 ~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
+.+|+|||+|--|-+.|+.|.+.+..++.+++.+.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 46899999999999999999999987899999754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=81.39 E-value=0.6 Score=44.58 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCceEEEecC
Q 037878 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKY 54 (2280)
Q Consensus 20 ~~~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~ 54 (2280)
..++|+|||||-.|..-|..|.+.|. +|+|+...
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~ 44 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT 44 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 35799999999999999999999998 69998653
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=80.45 E-value=0.56 Score=48.04 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=30.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
++|.|||-|..|...|..|.++|+ +|.+++++.
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNP 33 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCc
Confidence 479999999999999999999999 699998853
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.02 E-value=0.56 Score=49.81 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=28.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCCceEEEecCC
Q 037878 22 TRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYH 55 (2280)
Q Consensus 22 ~dV~IIGaGisGLsAA~~La~~G~~~VtVlEk~~ 55 (2280)
|+|+|||.|-.||..|..|+ +|+ +|+.+|-+.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILP 32 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTS-EEEEECSCH
T ss_pred CEEEEECCChhHHHHHHHHH-CCC-cEEEEECCH
Confidence 57999999999999999887 598 699999764
|