Citrus Sinensis ID: 037899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MGSKLMSLLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccccccHHHccccHHHHHHHHcccEEEHHHHccccccccccccccccccccccccccccccccHHHHHccccc
Coil and Loop (DISEMBL)
MGSKLMSLLFLTTAVVVVAMAAEsrafdgsnwgrinnvgrineydenemlmpteesRRQLwgggfisygalransvpcnrrgtsyyncnhgggpvnpyrrgcsaitncervtn
Flexible Loop (DISEMBL)
MGSKLMSLLFLTTAVVVVAMAAesrafdgsnwgrinnVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNcnhgggpvnpyrrgcsaitncervtn
Low Complexity Region (SEG)
MGSKLMSLLFLTTavvvvamaaESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN
Disordered region (IsUnstruct)
*****MSLLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDE***********RQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNC*****
Disordered Region (DISOPRED)
****LMSLLFLTTAVVVVAMAAESRAF*GSNWGRINNVGR******************QLWGGGFISYGALRANSVPCN*********************GCSAITNCE****
Disordered Region (DISEMBL)
MGSKLMSLLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN
Disordered Region (DISPRO)
*GSKLMSLLFLTTAVVVVAMAAESRAFD*SNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSKLMSLLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q9FZA0	110	Protein RALF-like 4 OS=Ar	yes	no	0.929	0.954	0.482	2e-15
Q8L9P8	116	Protein RALF-like 33 OS=A	no	no	0.566	0.551	0.6	7e-15
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.690	0.709	0.537	1e-14
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.522	0.495	0.583	3e-13
Q945T0	115	Rapid alkalinization fact	N/A	no	0.929	0.913	0.419	1e-12
Q9LUS7	138	Rapid alkalinization fact	no	no	0.504	0.413	0.603	2e-12
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.876	0.825	0.398	2e-11
Q2HIM9	113	Protein RALF-like 31 OS=A	no	no	0.911	0.911	0.387	3e-11
Q9FHA6	129	Protein RALF-like 34 OS=A	no	no	0.725	0.635	0.457	2e-10
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.530	0.508	0.492	1e-08

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 7/112 (6%)

Query: 1   MGSKLMSLLFLTTAVVVVAMAAES-RAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQ 59
           MG K++ L+F    ++++AM A+S  A        IN  G I E DE E LM +E +RRQ
Sbjct: 1   MGVKML-LIF---GLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLMDSETNRRQ 56

Query: 60  LWGGG-FISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER 110
           L  G  +I Y AL+ N+VPC+RRG SYY+C       NPYRRGCSAIT+C R
Sbjct: 57  LARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRN-NPYRRGCSAITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 46  ENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAI 105
           E E  M +E +RR L    +ISYGALR N+VPC+RRG SYYNC   G   NPY RGCSAI
Sbjct: 53  EEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRR-GAQANPYSRGCSAI 111

Query: 106 TNCER 110
           T C R
Sbjct: 112 TRCRR 116

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 35  INNVGRINEYDENEMLMPTEESRRQLWGG-GFISYGALRANSVPCNRRGTSYYNCNHGGG 93
           +N  G I E  E + LM +E +RRQL     +ISYGALR N+VPC+RRG SYY+C     
Sbjct: 32  VNGQGCIGEDGELDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKK-RK 90

Query: 94  PVNPYRRGCSAITNCERVTN 113
             NPYRRGCS IT+C R T+
Sbjct: 91  RANPYRRGCSVITHCYRQTS 110

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 51  MPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER 110
             ++ SRR L    +ISYGA+R NSVPC+RRG SYYNC   G   NPY RGCS IT C R
Sbjct: 61  FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQR-GAQANPYSRGCSTITRCRR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 3   SKLMSLLFLTTAVVVVAMAAESRAFD-----GSNWGRINNVGRINEYDENEMLMPTEESR 57
           S L+  + +    + +A A +S A+D      S  G   ++G     +E   L  +E +R
Sbjct: 5   SGLILCVLIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGECIAEEEEFEL-DSESNR 63

Query: 58  RQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCE 109
           R L    +ISYGAL+ NSVPC+RRG SYYNC   G   NPY RGCSAIT C 
Sbjct: 64  RILATKKYISYGALQKNSVPCSRRGASYYNCKP-GAQANPYSRGCSAITRCR 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 53  TEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER 110
           +E +RR L    +ISYGALR N++PC+RRG SYYNC   G   NPY RGCSAIT C R
Sbjct: 81  SEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR-GAQANPYSRGCSAITRCRR 137

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 9   LFLTTAVVVV-------AMAAESRAFDGSNWGRINN-----VGRINE-YDENEMLMPTEE 55
           LFLT  ++VV         A  +    G  W    +      G I E     E  M +E 
Sbjct: 7   LFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAEEEEMDSEI 66

Query: 56  SRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNC 108
           +RR L    +ISY +L+ NSVPC+RRG SYYNC + G   NPY RGCS I  C
Sbjct: 67  NRRILATTKYISYQSLKRNSVPCSRRGASYYNCQN-GAQANPYSRGCSKIARC 118

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 9   LFLTTAVVVVAM-----AAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGG 63
           +F +TA+V+ A+     +A++      N      + R +   E+E LMPTE SRR L   
Sbjct: 1   MFNSTALVIFAILFLLISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQ 60

Query: 64  G-FISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN 113
             +I Y  LR + VPC + G SYY+C  G    N Y RGC  IT C R TN
Sbjct: 61  KRYIGYETLRRDMVPCQKPGASYYDCRSGQA--NSYSRGCDTITRCARDTN 109

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 28  DGSNWGRINNVGRINEYDENEMLMPTEES-----RRQLW---GGGFISYGALRANSVPCN 79
           DG +W  I++    +  D  E    TEE      RR L+      +ISYGAL AN VPC 
Sbjct: 37  DGFDWP-ISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCP 95

Query: 80  -RRGTSYY--NCNHGGGPVNPYRRGCSAITNCER 110
            R G SYY  NC    GPV+PY RGCS+IT C R
Sbjct: 96  PRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 52  PTEESRR-QLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER 110
           P+E SRR  +    +ISY  LR + VPC + G SYY C  G    N Y RGCS IT C R
Sbjct: 54  PSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQA--NAYNRGCSVITRCAR 111

Query: 111 VTN 113
            TN
Sbjct: 112 DTN 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
358346090	111	RALF [Medicago truncatula] gi|355503040|	0.867	0.882	0.420	3e-16
356521855	118	PREDICTED: uncharacterized protein LOC10	0.964	0.923	0.445	5e-16
357498665	105	Rapid alkalinization factor [Medicago tr	0.858	0.923	0.442	2e-15
359493652	195	PREDICTED: uncharacterized protein LOC10	0.575	0.333	0.656	2e-15
356564045	120	PREDICTED: uncharacterized protein LOC10	0.575	0.541	0.621	3e-15
388490514	126	unknown [Medicago truncatula]	0.592	0.531	0.588	4e-15
225443652	128	PREDICTED: uncharacterized protein LOC10	0.619	0.546	0.608	5e-15
388516439	110	unknown [Lotus japonicus]	0.955	0.981	0.456	3e-14
116782892	122	unknown [Picea sitchensis]	0.973	0.901	0.412	3e-14
224285313	121	unknown [Picea sitchensis]	0.946	0.884	0.451	3e-14

>gi|358346090|ref|XP_003637105.1| RALF [Medicago truncatula] gi|355503040|gb|AES84243.1| RALF [Medicago truncatula]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 9/107 (8%)

Query: 8   LLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEY--DENEMLMPTEESRRQLWGGG- 64
           ++F   A+++  ++AE+       +  +    R+ +   D+NEMLM +E +RR L G   
Sbjct: 8   IMFFFLAMLIAMVSAEASKVHDFTFASV----RVGDLIGDDNEMLMDSESNRRTLAGRKR 63

Query: 65  -FISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER 110
            +ISYGAL+AN++PC ++G SYY+CN   G  NPYRRGC+AIT+C R
Sbjct: 64  RYISYGALKANNIPCGQKGQSYYDCN-ARGQANPYRRGCTAITHCAR 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521855|ref|XP_003529566.1| PREDICTED: uncharacterized protein LOC100780330 [Glycine max]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 65/119 (54%), Gaps = 10/119 (8%)

Query: 1   MGSKLMSLLFLTTAVVVVAMAAESRA-------FDGSNWGRINNVGRINEY--DENEMLM 51
           MGS      FL  A++ V +A  S +       F     G   +V   +    D+ E LM
Sbjct: 1   MGSSTFCAFFLLCAILAVHVAQSSSSTLDLDAFFLPLKSGCRGSVAECSLLAGDDAEFLM 60

Query: 52  PTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER 110
            +E +RR L G  +ISYGALR N+VPC+RRG SYYNC   G   NPY RGCSAIT C R
Sbjct: 61  ESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNC-RPGAQANPYSRGCSAITRCRR 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498665|ref|XP_003619621.1| Rapid alkalinization factor [Medicago truncatula] gi|355494636|gb|AES75839.1| Rapid alkalinization factor [Medicago truncatula]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 7/104 (6%)

Query: 8   LLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFIS 67
           L+F   A+V+  ++A++      ++     VG +   +ENEMLM +E +RR+     +IS
Sbjct: 8   LMFFFLAMVIAMVSAKASKVHDFSFPSPVLVGDLIR-EENEMLMDSESNRRR-----YIS 61

Query: 68  YGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERV 111
           Y AL A+S+PC  +G SYY+CNH    VNPYRRGC+AIT+C RV
Sbjct: 62  YDALLADSIPCGLKGQSYYDCNHRDQ-VNPYRRGCTAITHCARV 104

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493652|ref|XP_003634644.1| PREDICTED: uncharacterized protein LOC100853046 [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 50/67 (74%), Gaps = 2/67 (2%)

Query: 48  EMLMPTEESRRQL-WGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAIT 106
           E +M +E SRR L  GG FISYGAL+ N+VPCNRRG SYYNC   GG  NPY+RGCS IT
Sbjct: 130 ETMMDSEVSRRTLAQGGKFISYGALKKNNVPCNRRGRSYYNCRK-GGRANPYQRGCSTIT 188

Query: 107 NCERVTN 113
           +C R TN
Sbjct: 189 HCARYTN 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564045|ref|XP_003550267.1| PREDICTED: uncharacterized protein LOC100775931 [Glycine max]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 45  DENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSA 104
           D+ E LM +E +RR L G  +ISYGALR N+VPC+RRG SYYNC   G   NPY RGCSA
Sbjct: 56  DDTEFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNC-RPGAQANPYSRGCSA 114

Query: 105 ITNCER 110
           IT C R
Sbjct: 115 ITRCRR 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490514|gb|AFK33323.1| unknown [Medicago truncatula]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 43  EYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGC 102
           + D++E +M +E +RR L    +ISYGALR N+VPC+RRG SYYNC   G   NPYRRGC
Sbjct: 60  DEDDSEFMMDSESNRRILAARRYISYGALRRNTVPCSRRGASYYNC-RPGAQANPYRRGC 118

Query: 103 SAITNCER 110
           SAIT C R
Sbjct: 119 SAITRCRR 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443652|ref|XP_002280202.1| PREDICTED: uncharacterized protein LOC100267454 [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 52/74 (70%), Gaps = 4/74 (5%)

Query: 41  INEYDENEMLMPTEESRRQL-WGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYR 99
           INE  ++EM+M +E +RR L     +ISYGALR N VPCNRRG SYYNC   GG  NPYR
Sbjct: 58  INE--DDEMMMDSETNRRSLAQRRRYISYGALRRNQVPCNRRGRSYYNCRR-GGRANPYR 114

Query: 100 RGCSAITNCERVTN 113
           RGCS IT C R T+
Sbjct: 115 RGCSVITKCHRFTD 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516439|gb|AFK46281.1| unknown [Lotus japonicus]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 6/114 (5%)

Query: 1   MGSKLMSLLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQL 60
           M  K    L +   + +   A  S+  D   +G + +V  I E  +NEML+ +E SRR L
Sbjct: 1   MNFKPRLALLILATMALAMAAEASKVHDFGYYGVVGDV--IGE--DNEMLLDSEASRRTL 56

Query: 61  WGG-GFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN 113
            G  G+ISYGAL+A  VPC RRG SYYNC    G  NPYRRGC+A T+C R  N
Sbjct: 57  RGRRGYISYGALKAGQVPCGRRGRSYYNCQQ-RGRANPYRRGCTAATHCARNLN 109

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782892|gb|ABK22709.1| unknown [Picea sitchensis]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 3   SKLMSLLFLTTAVVVVAMAAESRAFDG--SNWGRINNVGRINE-YDENEMLMPTEESRRQ 59
           S ++ +  L+T ++     +E  AF+    +  R    G I E +++ EM M +E +RR 
Sbjct: 10  SGVLLVCVLSTVLIEPVAGSEMDAFEALWVSKPRPRCEGSIGECFEDEEMQMDSEINRRF 69

Query: 60  LWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN 113
           L G  ++SYGALR+NSVPC+RRG+SYYNC       NPY+R C+ IT C R T+
Sbjct: 70  LAGRTYVSYGALRSNSVPCSRRGSSYYNCG-STSQANPYKRSCTQITRCARSTS 122

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224285313|gb|ACN40381.1| unknown [Picea sitchensis]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 6/113 (5%)

Query: 5   LMSLLFLTTAVVVVAMAAESRAFDGSNWG---RINNVGRINE-YDENEMLMPTEESRRQL 60
           L+ L  L+  ++  A  +E  A+ G  W    R    G I E ++E+EM M +E +RR L
Sbjct: 11  LLLLSVLSADLIGSAAGSEMDAW-GVLWDSKPRPRCEGLIGECFEEDEMQMDSEINRRFL 69

Query: 61  WGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN 113
            G  +ISY ALRANSVPC+RRG+SYYNC       NPY+R C+ IT C R T+
Sbjct: 70  AGRTYISYAALRANSVPCSRRGSSYYNC-RSTSQANPYQRSCTTITRCARSTS 121

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.964	0.990	0.438	8.6e-17
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.663	0.681	0.571	2.9e-16
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.566	0.551	0.6	1.3e-15
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.575	0.546	0.575	1.6e-15
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.610	0.6	0.555	4.2e-15
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.548	0.449	0.587	5.4e-15
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.672	0.644	0.475	7.1e-13
TAIR|locus:2155553	129	RALFL34 "ralf-like 34" [Arabid	0.725	0.635	0.468	1.9e-12
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.539	0.508	0.531	2.4e-12
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.584	0.584	0.507	5e-12

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 50/114 (43%), Positives = 64/114 (56%)

Query:     1 MGSKLMSLLFLTTXXXXXXXXXESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQL 60
             MG K++ +L L T          +     S    +N  G I E  E + LM +E +RRQL
Sbjct:     1 MGIKILLILGLLTLAVVAESANATWTLTKSC---VNGQGCIGEDGELDYLMDSETNRRQL 57

Query:    61 WGG-GFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERVTN 113
                  +ISYGALR N+VPC+RRG SYY+C       NPYRRGCS IT+C R T+
Sbjct:    58 AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKR-ANPYRRGCSVITHCYRQTS 110

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 44/77 (57%), Positives = 52/77 (67%)

Query:    35 INNVGRINEYDENEMLMPTEESRRQLWGGG-FISYGALRANSVPCNRRGTSYYNCNHGGG 93
             IN  G I E DE E LM +E +RRQL  G  +I Y AL+ N+VPC+RRG SYY+C     
Sbjct:    32 INGQGCIGEDDELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRR 91

Query:    94 PVNPYRRGCSAITNCER 110
               NPYRRGCSAIT+C R
Sbjct:    92 N-NPYRRGCSAITHCYR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/65 (60%), Positives = 44/65 (67%)

Query:    46 ENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAI 105
             E E  M +E +RR L    +ISYGALR N+VPC+RRG SYYNC  G    NPY RGCSAI
Sbjct:    53 EEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGA-QANPYSRGCSAI 111

Query:   106 TNCER 110
             T C R
Sbjct:   112 TRCRR 116

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/66 (57%), Positives = 44/66 (66%)

Query:    45 DENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSA 104
             +E EM   ++ SRR L    +ISYGA+R NSVPC+RRG SYYNC  G    NPY RGCS 
Sbjct:    55 EEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGA-QANPYSRGCST 113

Query:   105 ITNCER 110
             IT C R
Sbjct:   114 ITRCRR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/72 (55%), Positives = 47/72 (65%)

Query:    39 GRINEY--DENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVN 96
             G I E   +E E  + +E +RR L    +ISYGAL+ NSVPC+RRG SYYNC  G    N
Sbjct:    43 GSIGECIAEEEEFELDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGA-QAN 101

Query:    97 PYRRGCSAITNC 108
             PY RGCSAIT C
Sbjct:   102 PYSRGCSAITRC 113

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/63 (58%), Positives = 43/63 (68%)

Query:    48 EMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITN 107
             E  M +E +RR L    +ISYGALR N++PC+RRG SYYNC  G    NPY RGCSAIT 
Sbjct:    76 EFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGA-QANPYSRGCSAITR 134

Query:   108 CER 110
             C R
Sbjct:   135 CRR 137

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/80 (47%), Positives = 46/80 (57%)

Query:    35 INNVGRINEYDENEMLMPTEESRR-QLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGG 93
             +N  G I E +E E +MP+E SRR  +    +ISY  LR + VPC + G SYY C    G
Sbjct:    38 LNRNGVIGE-EEGEEMMPSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACR--SG 94

Query:    94 PVNPYRRGCSAITNCERVTN 113
               N Y RGCS IT C R TN
Sbjct:    95 QANAYNRGCSVITRCARDTN 114

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2155553 RALFL34 "ralf-like 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 44/94 (46%), Positives = 51/94 (54%)

Query:    28 DGSNWGRINNVGRINEYDENEMLMPTEES-----RRQL-WGGG--FISYGALRANSVPCN 79
             DG +W  I++    +  D  E    TEE      RR L W     +ISYGAL AN VPC 
Sbjct:    37 DGFDWP-ISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCP 95

Query:    80 -RRGTSYY--NCNHGGGPVNPYRRGCSAITNCER 110
              R G SYY  NC    GPV+PY RGCS+IT C R
Sbjct:    96 PRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0006949 "syncytium formation" evidence=RCA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 34/64 (53%), Positives = 42/64 (65%)

Query:    45 DENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSA 104
             +E EM   +E +RR L    +ISY +L+ NSVPC+RRG SYYNC +G    NPY RGCS 
Sbjct:    58 EEEEM--DSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGA-QANPYSRGCSK 114

Query:   105 ITNC 108
             I  C
Sbjct:   115 IARC 118

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 35/69 (50%), Positives = 40/69 (57%)

Query:    46 ENEMLMPTEESRRQLWGGG-FISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSA 104
             E+E LMPTE SRR L     +I Y  LR + VPC + G SYY+C    G  N Y RGC  
Sbjct:    43 EDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCR--SGQANSYSRGCDT 100

Query:   105 ITNCERVTN 113
             IT C R TN
Sbjct:   101 ITRCARDTN 109

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZA0	RLF4_ARATH	No assigned EC number	0.4821	0.9292	0.9545	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003079001 SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (150 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	1e-24
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	2e-19
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	1e-17

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 88.2 bits (219), Expect = 1e-24
 Identities = 39/65 (60%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 46  ENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAI 105
           E  ++M +   RR L    +ISYGALR NSVPC+RRG SYYNC   G P NPY RGCSAI
Sbjct: 3   EALVVMDSPAGRRVLAARRYISYGALRRNSVPCSRRGASYYNC-KPGAPANPYSRGCSAI 61

Query: 106 TNCER 110
           T C R
Sbjct: 62  TRCRR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score = 76.7 bits (188), Expect = 2e-19
 Identities = 39/65 (60%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 46  ENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAI 105
           E E  M +E +RR L    +ISYGALR N+VPC+RRG SYYNC   G   NPY RGCSAI
Sbjct: 56  EEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRR-GAQANPYSRGCSAI 114

Query: 106 TNCER 110
           T C R
Sbjct: 115 TRCRR 119

Length = 119

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score = 72.8 bits (178), Expect = 1e-17
 Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 48  EMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITN 107
           E  M +E +RR L    +ISYGALR N++PC+RRG SYYNC   G   NPY RGCSAIT 
Sbjct: 76  EFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR-GAQANPYSRGCSAITR 134

Query: 108 CER 110
           C R
Sbjct: 135 CRR 137

Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PLN03221	137	rapid alkalinization factor 23; Provisional	100.0
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.95
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	93.8

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=223.68  Aligned_cols=96  Identities=47%  Similarity=0.796  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhhh----c-ccCCCC--CCCCCCcc-cccc---ccccccCCCccccccccCCCccccccccCCCCCCCCC
Q 037899           13 TAVVVVAMAAESR----A-FDGSNW--GRINNVGR-INEY---DENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRR   81 (113)
Q Consensus        13 ~~~~~~~~~~~~~----~-~~~~~~--~~~C~~G~-~~~~---~eeE~~m~se~~RR~L~~~~yIsYgaL~~~~~pC~~~   81 (113)
                      ++||.|+++.+.+    + +++|+-  .+.|+ |+ +||.   +|+||+||||++||+|++++||||+||++|++||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrr   91 (119)
T PLN03222         13 IAILTVHFLFAAVTSQSTGFSGDFMPIDSKCN-GTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRR   91 (119)
T ss_pred             ehhhHHHHHHHHhhcccccccccccCCCCcCC-CCHHHhhcccccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCC
Confidence            4444444443333    2 455542  34699 99 7773   4779999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCCCCCCCCCCcccccccC
Q 037899           82 GTSYYNCNHGGGPVNPYRRGCSAITNCER  110 (113)
Q Consensus        82 g~sy~nC~~~~~~aNpYtRGCs~i~rCrr  110 (113)
                      |++||||++ ++|+|||+|||++||||||
T Consensus        92 G~SYynC~~-~~~ANPY~RGCs~ITrCrR  119 (119)
T PLN03222         92 GASYYNCRR-GAQANPYSRGCSAITRCRR  119 (119)
T ss_pred             CCCccccCC-CCCCCCCCCCchhhccccC
Confidence            999999999 9999999999999999997

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=100.00  E-value=5e-36  Score=220.61  Aligned_cols=102  Identities=40%  Similarity=0.708  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhc-cc----CCC--CCCCCCCcc-ccc--------------cccc---cccCCCcccccccc
Q 037899            7 SLLFLTTAVVVVAMAAESRA-FD----GSN--WGRINNVGR-INE--------------YDEN---EMLMPTEESRRQLW   61 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~-~~----~~~--~~~~C~~G~-~~~--------------~~ee---E~~m~se~~RR~L~   61 (113)
                      -.+|.||.||+|++....++ .+    +++  ....|+ || +||              |++|   |++||||++||+|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~   89 (137)
T PLN03221         11 AAIFAILLILAVHFWSVAVSSQSIEFAGDFPPFETECR-GTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILA   89 (137)
T ss_pred             HHHHHHHHHHHHHHHhheeecccccccccccCCCCccc-CCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHh
Confidence            35677777777777654443 11    122  244699 99 766              2233   78999999999999


Q ss_pred             CCCccccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCcccccccC
Q 037899           62 GGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER  110 (113)
Q Consensus        62 ~~~yIsYgaL~~~~~pC~~~g~sy~nC~~~~~~aNpYtRGCs~i~rCrr  110 (113)
                      +++||||+||++|++||+++|++||||++ ++|+|||+|||++||||||
T Consensus        90 ~~rYISYgALrrd~vPCsrrG~SYynC~~-~~pANPY~RGCs~ITRCrR  137 (137)
T PLN03221         90 TRRYISYGALRRNTIPCSRRGASYYNCRR-GAQANPYSRGCSAITRCRR  137 (137)
T ss_pred             cCCccCHHHhccCCCCCCCCCCCccccCC-CCCCCCCCCCcccccccCC
Confidence            99999999999999999999999999999 9999999999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.95  E-value=6.6e-29  Score=163.96  Aligned_cols=65  Identities=57%  Similarity=1.056  Sum_probs=62.2

Q ss_pred             ccccccCCCccccccccCCCccccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCcccccccC
Q 037899           45 DENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCER  110 (113)
Q Consensus        45 ~eeE~~m~se~~RR~L~~~~yIsYgaL~~~~~pC~~~g~sy~nC~~~~~~aNpYtRGCs~i~rCrr  110 (113)
                      +|+|+.|++|++||+|++++||+|+||++|.+||.++|.+|++|.+ ++|+|||+|||++||||||
T Consensus         2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~-~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCP-RQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCC-CCCCCCCCCCCCccccCCC
Confidence            5788999999999999999999999999999999999999999988 8999999999999999997

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=93.80  E-value=0.075  Score=37.20  Aligned_cols=15  Identities=47%  Similarity=0.339  Sum_probs=9.4

Q ss_pred             CCchhHHHHHHHHHH
Q 037899            1 MGSKLMSLLFLTTAV   15 (113)
Q Consensus         1 m~~k~~~~~~~~~~~   15 (113)
                      |.+|.|+++.|+||+
T Consensus         1 MaSK~~llL~l~LA~   15 (95)
T PF07172_consen    1 MASKAFLLLGLLLAA   15 (95)
T ss_pred             CchhHHHHHHHHHHH
Confidence            889995555555443

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00