Citrus Sinensis ID: 037906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
ASATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILEKELEFYIKNIQRKKGRGAGAA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
ASATDEAKKRNHVLRKLEKrkkdrtldphieeQFASGrllaclssppshcgradgyILEKELEFYIKNIQRkkgrgagaa
Flexible Loop (DISEMBL)
asatdeakkrnhvlrklekrkkdrtldphIEEQFASGRLLACLSSPPSHCGRADGYILEKELEFYIKNiqrkkgrgagaa
Low Complexity Region (SEG)
ASATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILEKELEFYIKNIQRKKGRGAGAA
Disordered region (IsUnstruct)
***********************************SGRLLACLSSPPSHCGRADGYILEKELEFYIKNI***********
Disordered Region (DISOPRED)
******************************EEQFASGRLLACLSSPPSHCGRADGYILEKELEFYIKNI***********
Disordered Region (DISEMBL)
***********HVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILEKELEFYIKNIQR*********
Disordered Region (DISPRO)
*************LRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILEKELEFYIKNIQRKK*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ASATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILEKELEFYIKNIQRKKGRGAGAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
P49199	220	40S ribosomal protein S8	yes	no	0.975	0.354	0.746	2e-28
Q08069	221	40S ribosomal protein S8	N/A	no	0.975	0.352	0.746	1e-27
Q9FIF3	210	40S ribosomal protein S8-	yes	no	1.0	0.380	0.679	1e-21
Q93VG5	222	40S ribosomal protein S8-	no	no	0.737	0.265	0.716	3e-19
O81361	221	40S ribosomal protein S8	N/A	no	0.8	0.289	0.692	5e-19
Q90YR6	208	40S ribosomal protein S8	N/A	no	0.737	0.283	0.566	7e-14
Q7SYU0	208	40S ribosomal protein S8	N/A	no	0.725	0.278	0.593	1e-13
Q8MLY8	208	40S ribosomal protein S8	yes	no	0.825	0.317	0.537	2e-13
P62247	208	40S ribosomal protein S8	yes	no	0.7	0.269	0.596	3e-13
O76756	208	40S ribosomal protein S8	yes	no	0.75	0.288	0.557	4e-13

>sp|P49199|RS8_ORYSJ 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 68/79 (86%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           + T+EAKK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 142 ATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 201

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+GA A
Sbjct: 202 ELEFYMKKLQRKKGKGASA 220

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           +A +E KK NHV RKLEKRK+ RTLDPHIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 143 AAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+ A A
Sbjct: 203 ELEFYMKKLQRKKGKSAVA 221

Zea mays (taxid: 4577)

>sp|Q9FIF3|RS82_ARATH 40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 66/81 (81%), Gaps = 1/81 (1%)

Query: 1   ASATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE- 59
           A  T+E KK NHV RKLE R++ R LD H+EEQF+SGRLLAC++S P  CGRADGYILE 
Sbjct: 130 AVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEG 189

Query: 60  KELEFYIKNIQRKKGRGAGAA 80
           KELEFY+K +Q+KKG+ AGAA
Sbjct: 190 KELEFYMKKLQKKKGKNAGAA 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 1/60 (1%)

Query: 8   KKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYI 66
           KK NH+LRK+  R++ R+LD HIE+QFASGRLLAC+SS P  CGRADGYILE KELEFY+
Sbjct: 151 KKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYM 210

Arabidopsis thaliana (taxid: 3702)

>sp|O81361|RS8_PRUAR 40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 52/65 (80%), Gaps = 1/65 (1%)

Query: 8   KKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYI 66
           KK NHV  KLEKR++ RTLD HIEEQF  G+LLAC+SS P  CG+ADG ILE KELEFY+
Sbjct: 147 KKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYM 206

Query: 67  KNIQR 71
           K +QR
Sbjct: 207 KKLQR 211

Prunus armeniaca (taxid: 36596)

>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 47/60 (78%), Gaps = 1/60 (1%)

Query: 17  LEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKGR 75
            +KR+K+  + P ++EQF  G+LLAC+SS P  CGRADGY+LE KELEFY++ I+ KKG+
Sbjct: 149 FDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Ictalurus punctatus (taxid: 7998)

>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 18  EKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKGR 75
           E+RKK   + P +EEQF  G+LLAC++S P  CGRADGY+LE KELEFY++ I+ KKG+
Sbjct: 150 EERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Xenopus laevis (taxid: 8355)

>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 8   KKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYI 66
           K+   V++K  +R+K   ++  +E+QF SGR+LAC+SS P  CGR+DGYILE KELEFY+
Sbjct: 142 KRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYL 201

Query: 67  KNIQRKK 73
           K I+ KK
Sbjct: 202 KKIKSKK 208

Drosophila melanogaster (taxid: 7227)

>sp|P62247|RS8_DANRE 40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 20  RKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKGR 75
           R+K   + P +EEQF  G+LLAC+SS P  CGRADGY+LE KELEFY++ I+ KKG+
Sbjct: 152 RRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Danio rerio (taxid: 7955)

>sp|O76756|RS8_APIME 40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 16  KLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKG 74
           K + R++   ++P +EEQFA+GR+LAC+SS P  CGR DGYILE KELEFY++ I+ KK 
Sbjct: 148 KYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKKA 207

Query: 75  R 75
           +
Sbjct: 208 K 208

Apis mellifera (taxid: 7460)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
449461203	219	PREDICTED: 40S ribosomal protein S8-like	0.987	0.360	0.737	8e-28
115457852	221	Os04g0349500 [Oryza sativa Japonica Grou	0.975	0.352	0.759	2e-27
125547847	221	hypothetical protein OsI_15456 [Oryza sa	0.975	0.352	0.759	2e-27
224127352	220	predicted protein [Populus trichocarpa]	0.987	0.359	0.75	5e-27
115446173	220	Os02g0489400 [Oryza sativa Japonica Grou	0.975	0.354	0.746	7e-27
224056425	218	predicted protein [Populus trichocarpa]	0.975	0.357	0.759	1e-26
149391819	168	40S ribosomal protein S8 [Oryza sativa I	0.975	0.464	0.746	1e-26
968902	220	ribosomal protein S8 [Oryza sativa Japon	0.975	0.354	0.746	2e-26
255587656	221	40S ribosomal protein S8, putative [Rici	0.925	0.334	0.773	3e-26
162464180	221	40S ribosomal protein S8 [Zea mays] gi|6	0.975	0.352	0.746	5e-26

>gi|449461203|ref|XP_004148331.1| PREDICTED: 40S ribosomal protein S8-like [Cucumis sativus] gi|449507060|ref|XP_004162922.1| PREDICTED: 40S ribosomal protein S8-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 70/80 (87%), Gaps = 1/80 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           + T+E KK NHV RK+EKR++DR LDPHIEEQF+SGRL+AC+SS P  CGRADGYILE K
Sbjct: 140 AGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGK 199

Query: 61  ELEFYIKNIQRKKGRGAGAA 80
           ELEFY+K +QRKKG+GAGAA
Sbjct: 200 ELEFYMKKLQRKKGKGAGAA 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115457852|ref|NP_001052526.1| Os04g0349500 [Oryza sativa Japonica Group] gi|32489919|emb|CAE05511.1| OSJNBa0038P21.4 [Oryza sativa Japonica Group] gi|113564097|dbj|BAF14440.1| Os04g0349500 [Oryza sativa Japonica Group] gi|125589973|gb|EAZ30323.1| hypothetical protein OsJ_14370 [Oryza sativa Japonica Group] gi|215686988|dbj|BAG90858.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 69/79 (87%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           +AT+EAKK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 143 AATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+GA A
Sbjct: 203 ELEFYMKKLQRKKGKGAAA 221

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125547847|gb|EAY93669.1| hypothetical protein OsI_15456 [Oryza sativa Indica Group]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 69/79 (87%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           +AT+EAKK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 143 AATEEAKKSNHVVRKLEKRQQTRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+GA A
Sbjct: 203 ELEFYMKKLQRKKGKGAAA 221

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127352|ref|XP_002329256.1| predicted protein [Populus trichocarpa] gi|222870710|gb|EEF07841.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 1/80 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           + T+E KK NHV+RKLEKR++ R LDPHIEEQF SGRLLA +SS P  CGRADGYILE K
Sbjct: 141 ATTEETKKSNHVIRKLEKRQQVRKLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGK 200

Query: 61  ELEFYIKNIQRKKGRGAGAA 80
           ELEFY+K IQRKKG+GAGAA
Sbjct: 201 ELEFYMKKIQRKKGKGAGAA 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115446173|ref|NP_001046866.1| Os02g0489400 [Oryza sativa Japonica Group] gi|109940162|sp|P49199.2|RS8_ORYSJ RecName: Full=40S ribosomal protein S8 gi|47848087|dbj|BAD21871.1| putative 40S ribosomal protein S8 [Oryza sativa Japonica Group] gi|47848093|dbj|BAD21876.1| putative 40S ribosomal protein S8 [Oryza sativa Japonica Group] gi|113536397|dbj|BAF08780.1| Os02g0489400 [Oryza sativa Japonica Group] gi|215734981|dbj|BAG95703.1| unnamed protein product [Oryza sativa Japonica Group] gi|218190769|gb|EEC73196.1| hypothetical protein OsI_07259 [Oryza sativa Indica Group] gi|222622880|gb|EEE57012.1| hypothetical protein OsJ_06781 [Oryza sativa Japonica Group]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 68/79 (86%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           + T+EAKK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 142 ATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 201

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+GA A
Sbjct: 202 ELEFYMKKLQRKKGKGASA 220

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056425|ref|XP_002298850.1| predicted protein [Populus trichocarpa] gi|222846108|gb|EEE83655.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 67/79 (84%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           + T+E KK NHVLRKLEKR++ R LDPHIEEQF SGRLLA +SS P  CGRADGYILE K
Sbjct: 140 AVTEEVKKSNHVLRKLEKRQQIRKLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGK 199

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K IQRKKG+GAGA
Sbjct: 200 ELEFYLKKIQRKKGKGAGA 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149391819|gb|ABR25841.1| 40S ribosomal protein S8 [Oryza sativa Indica Group]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 68/79 (86%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           +AT+E KK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 90  AATEEEKKSNHVVRKLEKRQQTRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 149

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+GA A
Sbjct: 150 ELEFYMKKLQRKKGKGAAA 168

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|968902|dbj|BAA07207.1| ribosomal protein S8 [Oryza sativa Japonica Group]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 68/79 (86%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           + T+EAKK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 142 ATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 201

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+GA A
Sbjct: 202 ELEFYMKKLQRKKGKGASA 220

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587656|ref|XP_002534344.1| 40S ribosomal protein S8, putative [Ricinus communis] gi|223525453|gb|EEF28038.1| 40S ribosomal protein S8, putative [Ricinus communis]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 65/75 (86%), Gaps = 1/75 (1%)

Query: 7   AKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFY 65
           +KK NHV+RKLEKR+KDR LD HIEEQF  GRLLAC+SS P  CGRADGYILE KELEFY
Sbjct: 147 SKKSNHVIRKLEKRQKDRKLDAHIEEQFWGGRLLACISSRPGQCGRADGYILEGKELEFY 206

Query: 66  IKNIQRKKGRGAGAA 80
           +K +QRKKG+GAGAA
Sbjct: 207 MKKLQRKKGKGAGAA 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162464180|ref|NP_001105391.1| 40S ribosomal protein S8 [Zea mays] gi|6226702|sp|Q08069.2|RS8_MAIZE RecName: Full=40S ribosomal protein S8 gi|1498053|gb|AAB06330.1| ribosomal protein S8 [Zea mays] gi|194692698|gb|ACF80433.1| unknown [Zea mays] gi|195605614|gb|ACG24637.1| 40S ribosomal protein S8 [Zea mays] gi|413926193|gb|AFW66125.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926197|gb|AFW66129.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926198|gb|AFW66130.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926206|gb|AFW66138.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926210|gb|AFW66142.1| putative ribosomal protein S8e family protein [Zea mays]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
           +A +E KK NHV RKLEKRK+ RTLDPHIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct: 143 AAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202

Query: 61  ELEFYIKNIQRKKGRGAGA 79
           ELEFY+K +QRKKG+ A A
Sbjct: 203 ELEFYMKKLQRKKGKSAVA 221

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
UNIPROTKB|Q0JDZ7	221	OSJNBa0038P21.4 "40S ribosomal	0.975	0.352	0.759	8.2e-28
UNIPROTKB|P49199	220	RPS8 "40S ribosomal protein S8	0.975	0.354	0.746	2.2e-27
TAIR|locus:2168479	210	AT5G59240 "AT5G59240" [Arabido	1.0	0.380	0.679	2.9e-25
TAIR|locus:2149194	222	AT5G20290 "AT5G20290" [Arabido	0.95	0.342	0.688	1.6e-24
UNIPROTKB|A8HVQ1	208	RPS8 "40S ribosomal protein S8	0.912	0.350	0.581	2.5e-19
UNIPROTKB|Q17016	135	Q17016 "Anopheles gambiae puta	0.862	0.511	0.605	1.1e-16
ZFIN|ZDB-GENE-030131-8626	208	rps8a "ribosomal protein S8a"	0.85	0.326	0.557	9.8e-16
ZFIN|ZDB-GENE-050522-202	208	rps8b "ribosomal protein S8b"	0.85	0.326	0.557	1.6e-15
UNIPROTKB|G8JKY0	207	RPS8 "40S ribosomal protein S8	0.85	0.328	0.514	3.3e-15
UNIPROTKB|Q5E958	208	RPS8 "40S ribosomal protein S8	0.85	0.326	0.514	3.3e-15

UNIPROTKB|Q0JDZ7 OSJNBa0038P21.4 "40S ribosomal protein S8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 60/79 (75%), Positives = 69/79 (87%)

Query:     2 SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
             +AT+EAKK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct:   143 AATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202

Query:    61 ELEFYIKNIQRKKGRGAGA 79
             ELEFY+K +QRKKG+GA A
Sbjct:   203 ELEFYMKKLQRKKGKGAAA 221

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|P49199 RPS8 "40S ribosomal protein S8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 59/79 (74%), Positives = 68/79 (86%)

Query:     2 SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
             + T+EAKK NHV+RKLEKR++ RTLD HIEEQF SGRLLAC+SS P  CGRADGYILE K
Sbjct:   142 ATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 201

Query:    61 ELEFYIKNIQRKKGRGAGA 79
             ELEFY+K +QRKKG+GA A
Sbjct:   202 ELEFYMKKLQRKKGKGASA 220

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

TAIR|locus:2168479 AT5G59240 "AT5G59240" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 55/81 (67%), Positives = 66/81 (81%)

Query:     1 ASATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE- 59
             A  T+E KK NHV RKLE R++ R LD H+EEQF+SGRLLAC++S P  CGRADGYILE 
Sbjct:   130 AVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEG 189

Query:    60 KELEFYIKNIQRKKGRGAGAA 80
             KELEFY+K +Q+KKG+ AGAA
Sbjct:   190 KELEFYMKKLQKKKGKNAGAA 210

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2149194 AT5G20290 "AT5G20290" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 53/77 (68%), Positives = 65/77 (84%)

Query:     2 SATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-K 60
             +A +E KK NH+LRK+  R++ R+LD HIE+QFASGRLLAC+SS P  CGRADGYILE K
Sbjct:   145 AAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGK 204

Query:    61 ELEFYIKNIQRKKGRGA 77
             ELEFY+K IQ+KKG+GA
Sbjct:   205 ELEFYMKKIQKKKGKGA 221

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|A8HVQ1 RPS8 "40S ribosomal protein S8" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/74 (58%), Positives = 56/74 (75%)

Query:     5 DEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELE 63
             +E K  NHV RK+++R + R LD H+ EQF++GRL AC+SS P  CGR DGYILE KELE
Sbjct:   135 EEIKGSNHVKRKIKERLQKRKLDSHLAEQFSTGRLFACISSRPGQCGRCDGYILEGKELE 194

Query:    64 FYIKNIQRKKGRGA 77
             FY+K +Q+KK + A
Sbjct:   195 FYVKKMQKKKSKAA 208

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|Q17016 Q17016 "Anopheles gambiae putative ribosomal protein S8" [Anopheles gambiae (taxid:7165)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 43/71 (60%), Positives = 53/71 (74%)

Query:     7 AKKRNHV-LRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEF 64
             +KKR    LRK  KR+K+  +DP +EEQF +GRLLAC+SS P   GRADGYILE KELEF
Sbjct:    65 SKKRTKSNLRKYVKRQKNAKIDPAVEEQFNAGRLLACISSRPGQVGRADGYILEGKELEF 124

Query:    65 YIKNIQRKKGR 75
             Y+K I+ KK +
Sbjct:   125 YLKKIKNKKSK 135

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-030131-8626 rps8a "ribosomal protein S8a" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 39/70 (55%), Positives = 51/70 (72%)

Query:     8 KKRNH-VLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFY 65
             KKR+  V +K   R+K   + P +EEQF  G+LLAC+SS P  CGRADGY+LE KELEFY
Sbjct:   139 KKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFY 198

Query:    66 IKNIQRKKGR 75
             ++ I+ KKG+
Sbjct:   199 LRKIKAKKGK 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006414 "translational elongation" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

ZFIN|ZDB-GENE-050522-202 rps8b "ribosomal protein S8b" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query:     8 KKRNH-VLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFY 65
             KKR+  V +K+E R+K   +   +EEQF  G+LLAC++S P  CGRADGYILE KELEFY
Sbjct:   139 KKRSKKVQKKIEGRRKKSKISSLLEEQFLQGKLLACIASRPGQCGRADGYILEGKELEFY 198

Query:    66 IKNIQRKKGR 75
             ++ I+ KKG+
Sbjct:   199 LRKIKAKKGK 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|G8JKY0 RPS8 "40S ribosomal protein S8" [Bos taurus (taxid:9913)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 36/70 (51%), Positives = 53/70 (75%)

Query:     8 KKRNH-VLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFY 65
             KKR+  + +K ++RKK+  +   +EEQF  G+LLAC++S P  CGRADGY+LE KELEFY
Sbjct:   138 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 197

Query:    66 IKNIQRKKGR 75
             ++ I+ +KG+
Sbjct:   198 LRKIKARKGK 207

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5E958 RPS8 "40S ribosomal protein S8" [Bos taurus (taxid:9913)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 36/70 (51%), Positives = 53/70 (75%)

Query:     8 KKRNH-VLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFY 65
             KKR+  + +K ++RKK+  +   +EEQF  G+LLAC++S P  CGRADGY+LE KELEFY
Sbjct:   139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198

Query:    66 IKNIQRKKGR 75
             ++ I+ +KG+
Sbjct:   199 LRKIKARKGK 208

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49199	RS8_ORYSJ	No assigned EC number	0.7468	0.975	0.3545	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4335547	ribosomal protein, putative, expressed (221 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4333148	40S ribosomal protein S19, putative (146 aa)				•	•	•	•		0.960
	4332773	60S ribosomal protein L19-3, putative, expressed (208 aa)				•		•	•		0.931
	4333016	40S ribosomal protein S6, putative, expressed (245 aa)			•	•	•	•	•		0.925
	4343945	40S ribosomal protein S6, putative, expressed (250 aa)			•	•	•	•	•		0.921
	OsI_13894	ribosomal protein L4, putative, expressed (404 aa)			•	•	•	•	•		0.921
	4333317	60S ribosomal protein L19-3, putative, expressed (206 aa)				•		•	•		0.919
	4342563	ribosomal protein L4, putative, expressed (405 aa)			•	•	•	•	•		0.916
	4333308	40S ribosomal protein S3-1, putative, expressed (228 aa)				•	•	•	•		0.915
	4331742	40S ribosomal protein S28, putative, expressed (65 aa)			•	•	•	•	•		0.915
	4343869	40S ribosomal protein S3-1, putative, expressed (233 aa)				•	•	•	•		0.906

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
PTZ00148	205	PTZ00148, PTZ00148, 40S ribosomal protein S8; Prov	5e-27
cd11380	138	cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal r	5e-04

>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional

 Score = 96.6 bits (241), Expect = 5e-27
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 1   ASATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE- 59
                  KK   ++ KLE RKK+  +D  + EQF SGRLLA +SS P   GRADGYILE 
Sbjct: 131 EENKKAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYILEG 190

Query: 60  KELEFYIKNIQRKK 73
           KELEFY+K +++KK
Sbjct: 191 KELEFYLKKLEKKK 204

Length = 205

>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein S8e and similar proteins

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 31  EEQFASGRLLACLSSPPSHCGRADGYIL 58
           EE        A ++S P   G  +  +L
Sbjct: 111 EEGKVVWGGYAQVTSRPGQDGCVNAVLL 138

This family contains the eukaryotic/archaeal ribosomal protein S8, a component of the small ribosomal subunits, as well as the NSA2 gene product. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
PTZ00148	205	40S ribosomal protein S8; Provisional	100.0
KOG3283	200	consensus 40S ribosomal protein S8 [Translation, r	100.0
PF01201	132	Ribosomal_S8e: Ribosomal protein S8e; InterPro: IP	98.37
COG2007	127	RPS8A Ribosomal protein S8E [Translation, ribosoma	97.96
TIGR00307	127	S8e ribosomal protein S8.e. Archaeal and eukaryoti	97.74
PRK04049	127	30S ribosomal protein S8e; Validated	97.26
PTZ00388	223	40S ribosomal protein S8-like; Provisional	95.66

>PTZ00148 40S ribosomal protein S8; Provisional

Probab=100.00  E-value=1.5e-36  Score=226.11  Aligned_cols=70  Identities=56%  Similarity=0.869  Sum_probs=67.4

Q ss_pred             hhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhhc
Q 037906            5 DEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKG   74 (80)
Q Consensus         5 ~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK~   74 (80)
                      .++++|+++++||+.|+++++||++|+|||.+||||||||||||||||||||||| +||+||+++|++||+
T Consensus       135 ~~~k~s~~~~kk~~~r~~~~~~~~~leeqf~~GrllA~IsSRPGQ~Gr~dGyILEGkEL~FY~kk~~~kK~  205 (205)
T PTZ00148        135 KAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYILEGKELEFYLKKLEKKKK  205 (205)
T ss_pred             hhhhhhHHHHHHHHHhhhhccccHHHHHHHhhCeEEEEEeCCCCCccceeEEEEecHHHHHHHHHHHhccC
Confidence            4679999999999999999999999999999999999999999999999999999 999999999999873

>KOG3283 consensus 40S ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-36  Score=224.26  Aligned_cols=72  Identities=58%  Similarity=1.006  Sum_probs=69.0

Q ss_pred             hhhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhhcc
Q 037906            4 TDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKGR   75 (80)
Q Consensus         4 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK~k   75 (80)
                      .+++++|+++++||++|+++++||+.|+|||++|||||||+|||||||+||||||| +||+||+++|++||+|
T Consensus       128 ~~~~k~sk~~~rk~~~r~~~a~vds~l~eqF~~GrL~A~isSrpGQ~GradgyileGkEl~FYlrki~~kk~k  200 (200)
T KOG3283|consen  128 ILNKKKSKHVQRKYAERQKNAKVDSSLEEQFAAGRLYACISSRPGQCGRADGYILEGKELEFYLRKIKAKKGK  200 (200)
T ss_pred             cccchhhHHHHHHHHHhhccccccHHHHHHHhcCcEEEEEeCCCCcccccceeeeccchhHHHHHHhhhhcCC
Confidence            45688999999999999999999999999999999999999999999999999999 9999999999999864

>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []

Probab=98.37  E-value=4.2e-08  Score=68.97  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=18.5

Q ss_pred             eEEeecCCCccccccchhh
Q 037906           40 LACLSSPPSHCGRADGYIL   58 (80)
Q Consensus        40 lA~IsSRPGQ~GraDGyIL   58 (80)
                      ||+|+|||||+|.+|||||
T Consensus       114 ~A~vtSRPGQdG~vnavLl  132 (132)
T PF01201_consen  114 YARVTSRPGQDGVVNAVLL  132 (132)
T ss_dssp             EEEEESEHHHHSCEEEEEE
T ss_pred             eEEEEeCCCCcceeeEEEC
Confidence            9999999999999999997

One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.

>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=2.6e-06  Score=60.51  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=20.1

Q ss_pred             CceeEEeecCCCccccccchhhh
Q 037906           37 GRLLACLSSPPSHCGRADGYILE   59 (80)
Q Consensus        37 GrllA~IsSRPGQ~GraDGyILE   59 (80)
                      |  ||+|+|||||.|.++|++||
T Consensus       107 G--~A~VTsRPgQdG~vNavLl~  127 (127)
T COG2007         107 G--YAVVTSRPGQDGVVNAVLLE  127 (127)
T ss_pred             e--EEEEecCCCccceeEEEEeC
Confidence            7  99999999999999999986

>TIGR00307 S8e ribosomal protein S8

Probab=97.74  E-value=1e-05  Score=57.18  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=19.0

Q ss_pred             eEEeecCCCccccccchhhh
Q 037906           40 LACLSSPPSHCGRADGYILE   59 (80)
Q Consensus        40 lA~IsSRPGQ~GraDGyILE   59 (80)
                      +|+|+|||||.|.++|++||
T Consensus       107 ~A~VTsrPgQdG~vNavll~  126 (127)
T TIGR00307       107 YARVTSRPGQDGVVNGVLIE  126 (127)
T ss_pred             EEEEecCCCcCceEeEEEec
Confidence            59999999999999999997

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.

>PRK04049 30S ribosomal protein S8e; Validated

Probab=97.26  E-value=0.0001  Score=52.14  Aligned_cols=19  Identities=26%  Similarity=0.452  Sum_probs=18.4

Q ss_pred             EEeecCCCccccccchhhh
Q 037906           41 ACLSSPPSHCGRADGYILE   59 (80)
Q Consensus        41 A~IsSRPGQ~GraDGyILE   59 (80)
                      |.|+|||||.|-.+|++||
T Consensus       108 A~VTSRPGQdG~vNavLi~  126 (127)
T PRK04049        108 AKVTSRPGQDGVVNAVLIE  126 (127)
T ss_pred             EEEecCCCcCceEEEEEec
Confidence            9999999999999999987

>PTZ00388 40S ribosomal protein S8-like; Provisional

Probab=95.66  E-value=0.0046  Score=47.49  Aligned_cols=19  Identities=21%  Similarity=0.371  Sum_probs=17.9

Q ss_pred             eEEeecCCCccccccchhh
Q 037906           40 LACLSSPPSHCGRADGYIL   58 (80)
Q Consensus        40 lA~IsSRPGQ~GraDGyIL   58 (80)
                      ||.|+|||||.|-.+|++|
T Consensus       204 yAqVTsrPgQDG~VNAVLL  222 (223)
T PTZ00388        204 YAQVTNNPENDGCINAVLL  222 (223)
T ss_pred             eEEEecCCCcCceeeEEEe
Confidence            6999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
2xzm_2	208	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-14
3u5c_I	200	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-10
3zey_5	220	High-resolution Cryo-electron Microscopy Structure		3e-08

>pdb|2XZM|2 Chain 2, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 208

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 9   KRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIK 67
           K  HV +++ KR K + L+ +IEEQF S R+LAC++S P   GRADGYILE KELEFYI+
Sbjct: 143 KSRHVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIR 201
Query: 68  NIQRKK 73
            +Q KK
Sbjct: 202 KLQSKK 207

>pdb|3U5C|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 200

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 15  RKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKK 73
           RK   R     ++  +E QF++GRL AC+SS P   GR DGYILE +EL FY++ +  KK
Sbjct: 141 RKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 200

>pdb|3ZEY|5 Chain 5, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 220

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 5   DEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELE 63
           D  K  + + RK E R+K   ++  + +Q   GRLLA ++S P   GRADG +LE  EL+
Sbjct: 150 DVKKASSKLKRKWEYRRKHHKIEKALADQLREGRLLARITSRPGQTGRADGALLEGAELQ 209
Query: 64  FYIKNIQRKK 73
           FY+K + +KK
Sbjct: 210 FYLKKLDKKK 219
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	2e-19
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	8e-19

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2 Length = 208

 Score = 77.1 bits (189), Expect = 2e-19
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 1   ASATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE- 59
                  K+++  ++K  KR K + L+ +IEEQF S R+LAC++S P   GRADGYILE 
Sbjct: 134 DRTVLGNKEKSRHVQKRVKRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEG 193

Query: 60  KELEFYIKNIQRKK 73
           KELEFYI+ +Q KK
Sbjct: 194 KELEFYIRKLQSKK 207

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I Length = 200

 Score = 75.1 bits (184), Expect = 8e-19
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 3   ATDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KE 61
             +   K  +  RK   R     ++  +E QF++GRL AC+SS P   GR DGYILE +E
Sbjct: 129 EEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEE 188

Query: 62  LEFYIKNIQRKK 73
           L FY++ +  KK
Sbjct: 189 LAFYLRRLTAKK 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	100.0
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	100.0
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	99.11
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	99.03
3j20_J	127	30S ribosomal protein S8E; archaea, archaeal, KINK	96.89

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I

Probab=100.00  E-value=2.6e-38  Score=233.65  Aligned_cols=70  Identities=41%  Similarity=0.786  Sum_probs=62.9

Q ss_pred             hhhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhh
Q 037906            4 TDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKK   73 (80)
Q Consensus         4 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK   73 (80)
                      ++++++|+++++||++|+++++||++|+|||++||||||||||||||||||||||| +||+||+++|++||
T Consensus       130 ~~~~k~s~~~~~k~~~r~~~~~i~~~leeqf~~GrllA~isSRPGQ~GradGyiLEGkELeFy~kk~~~kk  200 (200)
T 3u5c_I          130 EETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK  200 (200)
T ss_dssp             ------CSHHHHHHHHSCSSCCCCHHHHHHHHTTCCEEEECSCHHHHSCCCEEECCHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhHHHHHHHHHHHhhCCcCHHHHHHHhhCcEEEEEecCCCCccccceeEEccHHHHHHHHHHhccC
Confidence            45678999999999999999999999999999999999999999999999999999 99999999999875

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2

Probab=100.00  E-value=1.5e-37  Score=230.85  Aligned_cols=69  Identities=55%  Similarity=0.938  Sum_probs=66.2

Q ss_pred             hhhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhh
Q 037906            4 TDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKK   73 (80)
Q Consensus         4 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK   73 (80)
                      ..++++|+++++|| +|++++++||+|+|||++|||||||+||||||||||||||| +||+||+++|++||
T Consensus       138 ~~~~k~s~~~~kk~-~r~~~~~~~~~l~eqf~~GrllA~isSRPGQ~GradGyiLEGkELeFY~~k~~~kk  207 (208)
T 2xzm_2          138 LGNKEKSRHVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKK  207 (208)
T ss_dssp             CCSCCSSTTHHHHH-HHTTTCCCCHHHHHHHHHSEEEEEECSCHHHHSCCEEEECCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHH-HHhhhccccHHHHHHHhhCcEEEEEecCCCCcccccEEEEechhHHHHHHHHHhcc
Confidence            34678999999999 99999999999999999999999999999999999999999 99999999999987

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A

Probab=99.11  E-value=8.4e-12  Score=83.91  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=22.9

Q ss_pred             cCceeEEeecCCCccccccchhhh-HH
Q 037906           36 SGRLLACLSSPPSHCGRADGYILE-KE   61 (80)
Q Consensus        36 ~GrllA~IsSRPGQ~GraDGyILE-kE   61 (80)
                      .|+  |||+|||||+|++|||||| +|
T Consensus        68 ~Gk--A~VTSRPGQdG~vnavlL~g~e   92 (98)
T 2kcp_A           68 LGN--VRVTSRPGQDGVINGVLIRELE   92 (98)
T ss_dssp             SSE--EEECSCTTGGGSCEEEEECCSC
T ss_pred             CcE--EEEecCCCCccEEEEEEEeccc
Confidence            788  9999999999999999999 76

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}

Probab=99.03  E-value=1.2e-11  Score=86.68  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=23.0

Q ss_pred             eEEeecCCCccccccchhhh-HHHH
Q 037906           40 LACLSSPPSHCGRADGYILE-KELE   63 (80)
Q Consensus        40 lA~IsSRPGQ~GraDGyILE-kELe   63 (80)
                      ||||+|||||+|++|||||| +||+
T Consensus       108 ~A~VtSRPGQdG~vnavlleg~el~  132 (133)
T 2kco_A          108 LAVVTSRPGQDGVINAVLLKNESQR  132 (133)
T ss_dssp             EEEEEEEECTTSBEEEEECSSCCCC
T ss_pred             eEEEecCCCCcceEEEEEEeccccc
Confidence            79999999999999999999 9985

>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=96.89  E-value=0.00024  Score=49.08  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             HhcCceeEEeecCCCccccccchhhh
Q 037906           34 FASGRLLACLSSPPSHCGRADGYILE   59 (80)
Q Consensus        34 f~~GrllA~IsSRPGQ~GraDGyILE   59 (80)
                      ..-|  .|+|+|||||.|..++++||
T Consensus       103 te~G--~a~vtsrPgqdG~vNavll~  126 (127)
T 3j20_J          103 TEIG--KAKVTSRPGQDGVVNAILLE  126 (127)
T ss_dssp             BSSS--EEEECSCSSSSCCCCEEECC
T ss_pred             EcCc--eEEEecCCccCceEEEEEec
Confidence            3445  39999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00