Citrus Sinensis ID: 037920

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
Protein Sequence
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRYKRTTNVLTEK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccEEEcccccEEEEcHHHHHHHHHHHcccccEEEEccccccccccccccccEEEEEEEEEccccccccccccccccHHHHHHHcccccccccccHHHHHccccccEEEccccccccccccccccccccEEEcccccccccHHHHccccccEEcccccccccccccccccccccEEcccccccccccccccccccccccEEEcccccccccHHcccccccccccccccccEEEEEEEcccccccccccccccccEEEEccEEEcccccccccccccccccccccHHccccccEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHcccccccccccccccccEEEEcccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccccccEEEHHHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHcEEEEEcccccHHHccccccccccEEEEEEcccccccccccHHHHHHccccEEEEcccccccccccHHHHHHHHHEEcccccccccccHHHHHHHccEEEcccccHHHccHHHHHHHccEEEEccccccHccccHHHHHHHHccEEEEEEcccccccEEccccccHHHHHHHHcccEEEEEEccHHHccccccHHHHHHHEEEEccccccccccccHHHHHHHcccHcEEEEcccccHHHEEEccccccccHHHHHHHHHccHHHHHHccccccccccccccccccEEEEcccHHHEEEEccccccccccccccccEEEEccccHHccccccccccccHHccccccccEEEEcccHHHHHHEcccccccccccccccccccEEEEcccHHHHHHcccccccccccccEEEEEEccHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDirtnllpevvespqlKLLFICAdqesssltipnKFFERMMQVRVINLTNinlmslpsslgllsnlrtlsldncklldiTVVRDLKKLEILCLrgsnikmlpIEVSELARLRLLglrdcrelevipaNVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLElhikdvntlprglffpklqryKIHIGGYYYAGVWRRelkicpdskirlkdGLIVQLQGIedlglsklpeqdVDYFVNELakvgpsqlkhlhiwnhppnpaeskrreestdvMQSHEIILKVNVNALFVekvtlpklenleldsinVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENqeerknsivifpqlqylkmddleklrnfctgdvdilefpslkELIINRCPEFLMRYKRTTNVLTEK
Flexible Loop (DISEMBL)
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIAsteqnvfsatNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILClrgsnikmlpieVSELARLRLLGLRDCRELEVIPanvlsnlshLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIvvenqeerknsivifpqlqYLKMDDLEKLRNFCTGdvdilefpslkeliinrcpeflmrykrttnvltek
Low Complexity Region (SEG)
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINlmslpsslgllsnlrtlslDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRYKRTTNVLTEK
Disordered region (IsUnstruct)
******RVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWN********************HEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRYKRTTN*****
Disordered Region (DISOPRED)
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVV**********VIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRY***TN*****
Disordered Region (DISEMBL)
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN**************QSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRYKRTTNVLTEK
Disordered Region (DISPRO)
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRYKRT*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRYKRTTNVLTEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	505	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.528	0.271	0.291	2e-17
O81825	919	Probable disease resistan	no	no	0.479	0.263	0.307	6e-17
Q42484	909	Disease resistance protei	no	no	0.477	0.265	0.292	2e-15
Q8MVR1	2631	Cyclic GMP-binding protei	no	no	0.203	0.039	0.311	5e-06
Q80U72	1612	Protein scribble homolog	yes	no	0.310	0.097	0.3	2e-05
Q14160	1630	Protein scribble homolog	yes	no	0.310	0.096	0.293	5e-05
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.213	0.105	0.341	5e-05
Q39214	926	Disease resistance protei	no	no	0.360	0.196	0.239	0.0001
A6NIV6	560	Leucine-rich repeat and I	no	no	0.245	0.221	0.359	0.0002
F1MCA7	1536	Leucine-rich repeat-conta	no	no	0.178	0.058	0.333	0.0002

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 11/278 (3%)

Query: 12  VHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESA 71
           V  LK  C+L +    +++   MHDVVRD AI I S+ Q+   +      G ++   +  
Sbjct: 442 VESLKDYCLLED--GDRRDTVKMHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKL 499

Query: 72  IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN 131
                 + L + +   LP++VE   +K   +          +P  F +    +R++NL+ 
Sbjct: 500 APSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSG 559

Query: 132 INLMSLPS-SLGLLSNLRTLSLDNC-KLLDITVVRDLKKLEILCLRGSNIKMLPIEVSEL 189
             + S PS SL  L +L +L L +C KL+ +  +  L KLE+L L G++I   P  + EL
Sbjct: 560 TRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEEL 619

Query: 190 ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN-ASLHELKHL 248
            R R L L     LE IPA V+S LS LE L +  + + +W V+ E  K  A++ E+  L
Sbjct: 620 KRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHY-RWSVQGETQKGQATVEEIGCL 678

Query: 249 TSLELHIKDVNTLP-----RGLFFPKLQRYKIHIGGYY 281
             L++    +++ P     R  +  +L+++++ +G  Y
Sbjct: 679 QRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRY 716

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 15/257 (5%)

Query: 10  ALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDE 69
            LV +LK SC+L +  S   +   MHDVVRD AI   S++   F +      G  E+  +
Sbjct: 409 TLVERLKDSCLLEDGDSC--DTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQD 466

Query: 70  SAIKLYTSIVLHDIRTNLLPE-VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVIN 128
             +     + L   +   LP  V+E  +  +L +  +  S    +PN F +    +R+++
Sbjct: 467 KFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGN--SHVKEVPNGFLQAFPNLRILD 524

Query: 129 LTNINLMSLPSSLGLLSNLRTLSLDNC-KLLDITVVRDLKKLEILCLRGSNIKMLPIEVS 187
           L+ + + +LP S   L +LR+L L NC KL ++  +  L KL+ L L  S I+ LP  + 
Sbjct: 525 LSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLE 584

Query: 188 ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV---EMEGVKNASLHE 244
            L+ LR + + +  +L+ IPA  +  LS LE L +  +++  W +   E EG   A+L E
Sbjct: 585 ALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAY-SWGIKGEEREG--QATLDE 641

Query: 245 ---LKHLTSLELHIKDV 258
              L HL  L + + DV
Sbjct: 642 VTCLPHLQFLAIKLLDV 658

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 127/277 (45%), Gaps = 36/277 (12%)

Query: 9   HALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSAT--NEQVEGYREW 66
           + L+  LKA+C+L      +K    MH+VVR  A+ +AS EQ  +      E   G+ E 
Sbjct: 448 YFLIGDLKAACLL--ETGDEKTQVKMHNVVRSFALWMAS-EQGTYKELILVEPSMGHTEA 504

Query: 67  SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRV 126
                 +    I L D R   LPE +  P+L  L +   Q SS   IP  FF  M  +RV
Sbjct: 505 PKAENWRQALVISLLDNRIQTLPEKLICPKLTTLML--QQNSSLKKIPTGFFMHMPVLRV 562

Query: 127 INLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEV 186
           ++L+  ++  +P S+  L  L  LS+                       G+ I +LP E+
Sbjct: 563 LDLSFTSITEIPLSIKYLVELYHLSMS----------------------GTKISVLPQEL 600

Query: 187 SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV------EMEGVKNA 240
             L +L+ L L+  + L+ IP + +  LS LE L + Y S+  WE+      E E +  A
Sbjct: 601 GNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNL-YYSYAGWELQSFGEDEAEELGFA 659

Query: 241 SLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHI 277
            L  L++LT+L + +  + TL     F  L ++  H+
Sbjct: 660 DLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHL 696

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8MVR1|GBPC_DICDI Cyclic GMP-binding protein C OS=Dictyostelium discoideum GN=gbpC PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 120 RMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNI 179
           ++ Q++V+ L N  L++LP S+G L NL+ L +DN  L+ +  +  L KLE+L +  + +
Sbjct: 216 KLQQLQVLVLENNRLINLPQSIGDLVNLKRLEVDNNHLVSLCSLERLSKLEVLSVNNNKL 275

Query: 180 KMLPIEVSELARLRLLGLRDCRELEVIPANVLSN-----LSHLEELYIG 223
            +LP  ++ L+ L+ L ++    +   P+ V+S      +S L EL  G
Sbjct: 276 TLLPTSIASLSSLKTLNIK-SNPIITPPSTVVSKGLKDIVSFLRELETG 323

Promotes the exchange of Ras-bound GDP by GTP (By similarity). Required for cyclic GMP-mediated chemotaxis, polarity. Plays a key role in cyclic AMP-induced myosin II translocation to the cortex. Also involved in the phosphorylation of mlkA and mlcR, either directly or via an intermediate kinase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q80U72|SCRIB_MOUSE Protein scribble homolog OS=Mus musculus GN=Scrib PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%)

Query: 75  YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINL 134
           +  +V  D+  N +PE+ ES +       AD   + L+     F ++  +  + L +++L
Sbjct: 81  FMQLVELDVSRNDIPEIPESIKFCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSL 140

Query: 135 MSLPSSLGLLSNLRTLSLDNCKLLDITV-VRDLKKLEILCLRGSNIKMLPIEVSELARLR 193
            +LP  +G L+NL TL L    L  +   +  L KLE L L G+++++LP  +  L  LR
Sbjct: 141 QALPGDVGNLANLVTLELRENLLKSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLR 200

Query: 194 LLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVE 233
            L L D  +L  +P   L NL  L  L +  N   +  VE
Sbjct: 201 ELWL-DRNQLSALPPE-LGNLRRLVCLDVSENRLEELPVE 238

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q14160|SCRIB_HUMAN Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4

 Score = 50.1 bits (118), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 75  YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINL 134
           +  +V  D+  N +PE+ ES +       AD   + L+     F ++  +  + L +++L
Sbjct: 81  FMQLVELDVSRNDIPEIPESIKFCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSL 140

Query: 135 MSLPSSLGLLSNLRTLSLDNCKLLDITV-VRDLKKLEILCLRGSNIKMLPIEVSELARLR 193
            +LP  +G L+NL TL L    L  +   +  L KLE L L G+++++LP  +  L  LR
Sbjct: 141 QALPGDVGNLANLVTLELRENLLKSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLR 200

Query: 194 LLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVE 233
            L L D  +L  +P   L NL  L  L +  N   +   E
Sbjct: 201 ELWL-DRNQLSALPPE-LGNLRRLVCLDVSENRLEELPAE 238

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 21/129 (16%)

Query: 88  LPEVVESPQLKLLFICADQESSSLT-IPNKFF---ERMMQVRVINLTNINLMSLPSSLGL 143
           LP +     LK L +    E+S LT IP       ER+ Q   ++L+N  L +LPSS+G 
Sbjct: 559 LPPMGPGSALKTLTV----ENSPLTSIPADIGIQCERLTQ---LSLSNTQLRALPSSIGK 611

Query: 144 LSNLRTLSLDNCKLLDITVVRDLKKLEIL-------CLRGSNIKMLPIEVSELARLRLLG 196
           LSNL+ L+L N   L++     ++KLE +       C+R   +  LP  + +L +LR L 
Sbjct: 612 LSNLKGLTLKNNARLELLSESGVRKLESVRKIDLSGCVR---LTGLPSSIGKLPKLRTLD 668

Query: 197 LRDCRELEV 205
           L  C  L +
Sbjct: 669 LSGCTGLSM 677

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 96/196 (48%), Gaps = 14/196 (7%)

Query: 2   EVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVE 61
           EVA + ++ LV++     +L N   + K  F MHDV+ ++A+ ++  E+      N+  +
Sbjct: 472 EVADSYLNELVYRNMLQVILWNPFGRPKA-FKMHDVIWEIALSVSKLER-FCDVYNDDSD 529

Query: 62  GYREWSDESAIKLYTSIVLH-DIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
           G     D++A  +      H  I+  + P+ + +  L  L +C+  +     +P+     
Sbjct: 530 G-----DDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPS----- 579

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITV-VRDLKKLEILCLRGSNI 179
           +  +R ++L + ++  LP  L  + NL+ L+L   ++ ++      L  LE L  + S I
Sbjct: 580 LNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKI 639

Query: 180 KMLPIEVSELARLRLL 195
           + LP+ + +L +LR L
Sbjct: 640 EELPLGMWKLKKLRYL 655

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|A6NIV6|LRIQ4_HUMAN Leucine-rich repeat and IQ domain-containing protein 4 OS=Homo sapiens GN=LRRIQ4 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 120 RMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITV-VRDLKKLEILCLRGSN 178
           R   + ++ L N  L  L  S   L NLR L L    L    + +  LK LE+L L  + 
Sbjct: 278 RWTSLHLLYLGNTGLHRLRGSFRCLVNLRFLDLSQNHLHHCPLQICALKNLEVLGLDDNK 337

Query: 179 IKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVK 238
           I  LP E+  L++L++LGL    E    P  VLS L+ LE+LYIG +   K     E ++
Sbjct: 338 IGQLPSELGSLSKLKILGLTG-NEFLSFPEEVLS-LASLEKLYIGQDQGFKLTYVPEHIR 395

Query: 239 N-ASLHEL 245
              SL EL
Sbjct: 396 KLQSLKEL 403

Homo sapiens (taxid: 9606)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 134 LMSLPSSLGLLSNLRTLSLDNCKLLDITV-VRDLKKLEILCLRGSNIKMLPIEVSELARL 192
           L SLPS++G L +LRTL++D   L ++   +   K + ++ LR + ++ LP E+ ++ +L
Sbjct: 310 LESLPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKL 369

Query: 193 RLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           R+L L D R L+ +P +  + L  L  L++  N
Sbjct: 370 RVLNLSDNR-LKNLPFS-FTKLKELAALWLSDN 400

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
359487926	2087	PREDICTED: uncharacterized protein LOC10	0.924	0.223	0.353	9e-59
298204947	774	unnamed protein product [Vitis vinifera]	0.891	0.581	0.366	2e-58
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.897	0.344	0.347	2e-57
359488101	1677	PREDICTED: disease resistance protein At	0.900	0.271	0.357	2e-57
296087872	1152	unnamed protein product [Vitis vinifera]	0.853	0.374	0.357	4e-57
359488027	1520	PREDICTED: disease resistance protein At	0.853	0.283	0.357	4e-57
359488025	1781	PREDICTED: uncharacterized protein LOC10	0.869	0.246	0.35	5e-57
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.786	0.161	0.378	8e-57
302143590	948	unnamed protein product [Vitis vinifera]	0.867	0.462	0.343	1e-56
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.861	0.380	0.377	1e-56

>gi|359487926|ref|XP_002270338.2| PREDICTED: uncharacterized protein LOC100248775 [Vitis vinifera]

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 193/546 (35%), Positives = 290/546 (53%), Gaps = 79/546 (14%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQV 60
           +E A  R+H L+  LKAS +LL   S   E   MHD+VRDVA  IAS + + F    +  
Sbjct: 433 LEEAWDRLHTLIDNLKASSLLLE--SDDDECVRMHDIVRDVARGIASKDPHRFVVRED-- 488

Query: 61  EGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
           +   EWS     K  T I L+    + LP+ +  PQLK  F   D  + SL IPN FFE 
Sbjct: 489 DRLEEWSKTDESKSCTFISLNCRAAHELPKCLVCPQLK--FCLLDSNNPSLNIPNTFFEG 546

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M  ++V++L+ +   +LPSSL  L+NL+TL LD C L+DI ++  L KL++L LR S I+
Sbjct: 547 MKGLKVLDLSYMCFTTLPSSLDSLANLQTLCLDGCTLVDIALIGKLTKLQVLSLRRSTIQ 606

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
            LP E+ +L  LRLL L  C ELEVIP N+LS+LS LE LY+  N F +W +  EG  NA
Sbjct: 607 QLPNEMVQLTNLRLLDLNYCWELEVIPRNILSSLSRLECLYM--NRFTQWAI--EGESNA 662

Query: 241 SLHELKHLT-----SLELHIKDVNTLPRGL-FFPKLQRYKIHIG--GYYYAGVWRRELKI 292
            L EL HL+      L+LHI D+  LP+   F  KL RY I IG  G Y      R LK+
Sbjct: 663 CLSELNHLSRLTILDLDLHIPDIKLLPKEYTFLEKLTRYSIFIGDWGSYQYCKTSRTLKL 722

Query: 293 CP-DSKIRLKDGLIVQLQGIEDLGLSKL-PEQDVDYFVNELAKVGPSQLKHLHIWNHPPN 350
              D  + + DG+   L+  E+L L KL   + + Y ++E    G  +LKHLH+   P  
Sbjct: 723 NEVDRSLYVGDGIGKLLKKTEELVLRKLIGTKSIPYELDE----GFCELKHLHVSASP-- 776

Query: 351 PAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLE--------------LDSI 396
                   E   V+ S +  ++ +     +E + L +L NLE              L ++
Sbjct: 777 --------EIQYVIDSKDQRVQQHGAFPLLESLILDELINLEEVCCGPIPVKFFDNLKTL 828

Query: 397 NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERK------NSIVIF 450
           +VE+        +  ++    ++L++IEIK+C V+++++V E++ E K       ++  F
Sbjct: 829 DVEKCHGLKFLFLLSMARG-LLQLEKIEIKSCNVIQQIVVCESESEIKEDDHVETNLQPF 887

Query: 451 PQLQYLKMDDLEKLRNF--------------CT-GDVDI--------LEFP-SLKELIIN 486
           P+L+ LK++DL +L NF              C+ G++DI        + FP +L+EL++ 
Sbjct: 888 PKLRSLKLEDLPELMNFGYFDSKLEMTSQGTCSQGNLDIHMPFFRYKVSFPLNLEELVLK 947

Query: 487 RCPEFL 492
           + P+ +
Sbjct: 948 QLPKLM 953

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204947|emb|CBI34254.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 179/489 (36%), Positives = 270/489 (55%), Gaps = 39/489 (7%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQV 60
           +E A  R+H L+  LKAS +LL   S   E   MHD+VRDVA  IAS + + F    +  
Sbjct: 271 LEEAWDRLHTLIDNLKASSLLLE--SDDDECVRMHDIVRDVARGIASKDPHRFVVRED-- 326

Query: 61  EGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
           +   EWS     K  T I L+    + LP+ +  PQLK  F   D  + SL IPN FFE 
Sbjct: 327 DRLEEWSKTDESKSCTFISLNCRAAHELPKCLVCPQLK--FCLLDSNNPSLNIPNTFFEG 384

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M  ++V++L+ +   +LPSSL  L+NL+TL LD C L+DI ++  L KL++L LR S I+
Sbjct: 385 MKGLKVLDLSYMCFTTLPSSLDSLANLQTLCLDGCTLVDIALIGKLTKLQVLSLRRSTIQ 444

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
            LP E+ +L  LRLL L  C ELEVIP N+LS+LS LE LY+  N F +W +  EG  NA
Sbjct: 445 QLPNEMVQLTNLRLLDLNYCWELEVIPRNILSSLSRLECLYM--NRFTQWAI--EGESNA 500

Query: 241 SLHELKHLT-----SLELHIKDVNTLPRGL-FFPKLQRYKIHIG--GYYYAGVWRRELKI 292
            L EL HL+      L+LHI D+  LP+   F  KL RY I IG  G Y      R LK+
Sbjct: 501 CLSELNHLSRLTILDLDLHIPDIKLLPKEYTFLEKLTRYSIFIGDWGSYQYCKTSRTLKL 560

Query: 293 CP-DSKIRLKDGLIVQLQGIEDLGLSKL-PEQDVDYFVNELAKVGPSQLKHLHIWNHPP- 349
              D  + + DG+   L+  E+L L KL   + + Y ++E    G  +LKHLH+   P  
Sbjct: 561 NEVDRSLYVGDGIGKLLKKTEELVLRKLIGTKSIPYELDE----GFCELKHLHVSASPEI 616

Query: 350 ---NPAESKRREESTDVMQSHEIILK--VNVNALFVEKVTLPKLENLELDSINVERIWQS 404
                ++ +R ++         +IL   +N+  +    + +   +NL+  +++VE+    
Sbjct: 617 QYVIDSKDQRVQQHGAFPLLESLILDELINLEEVCCGPIPVKFFDNLK--TLDVEKCHGL 674

Query: 405 HVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERK------NSIVIFPQLQYLKM 458
               +  ++    ++L++IEIK+C V+++++V E++ E K       ++  FP+L+ LK+
Sbjct: 675 KFLFLLSMARG-LLQLEKIEIKSCNVIQQIVVCESESEIKEDDHVETNLQPFPKLRSLKL 733

Query: 459 DDLEKLRNF 467
           +DL +L NF
Sbjct: 734 EDLPELMNF 742

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 168/483 (34%), Positives = 268/483 (55%), Gaps = 30/483 (6%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQV 60
           +E  R  +  LV +LKASC+LL     K     MHDVV   AI +A  + +V +  +E  
Sbjct: 429 LEETRNSLLTLVDELKASCLLLE--GDKDGSVKMHDVVHSFAISVALRDHHVLTVADE-- 484

Query: 61  EGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
             ++EW     ++ YT+I L   +   LP ++E P L    +    +  SL IP+ FF  
Sbjct: 485 --FKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLL--NKDPSLQIPDSFFRE 540

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M ++++++LT +NL  LPSSL  L NL+TL LD+C L DI+++ +L KL++L L  SNI 
Sbjct: 541 MKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIGELNKLKVLSLMSSNIV 600

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVK-- 238
            LP E+ ++ RL+LL L +C  LEVI  N LS+L+ LE+LY+G NSF KWE E    +  
Sbjct: 601 RLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMG-NSFVKWETEGSSSQRN 659

Query: 239 NASLHELKH---LTSLELHIKDVNTLPRGLF--FPKLQRYKIHIG-GYYYA--GVWRREL 290
           NA L ELKH   L++L + I D + +P+ LF  F  L+R++I IG G+ ++      R L
Sbjct: 660 NACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDGWDWSVKDATSRTL 719

Query: 291 KICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN 350
           K+  ++ I+L++G+   L+  E+L L +L    V   +N+L   G  QL+HLH+ N P  
Sbjct: 720 KLKLNTVIQLEEGVNTLLKITEELHLQEL--NGVKSILNDLDGEGFPQLRHLHVQNCPGV 777

Query: 351 P--AESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSH--V 406
                S R    T  +    + L+ N++ L  EK+   +L    L ++ + ++   H   
Sbjct: 778 QYIINSIRMGPRTAFLNLDSLFLE-NLDNL--EKICHGQLMAESLGNLRILKVESCHRLK 834

Query: 407 AVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNS--IVIFPQLQYLKMDDLEKL 464
            + S       VRL+ I I +C+++EE++  E++ +  +   I+ F QL+ L +  L + 
Sbjct: 835 NLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPIIEFTQLRRLTLQCLPQF 894

Query: 465 RNF 467
            +F
Sbjct: 895 TSF 897

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 181/506 (35%), Positives = 283/506 (55%), Gaps = 51/506 (10%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNE-- 58
           +E A+ R+  LV  LK+S +LL   +    +  MHD+VR  A  IAS + +VF+  N   
Sbjct: 434 LEEAKNRIDTLVETLKSSNLLLE--TGHNAVVRMHDLVRSTARKIASDQHHVFTLQNTTV 491

Query: 59  QVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESS-SLTIPNKF 117
           +VEG   W     ++  TS+ LHD     LPE +  P+L+L F C D  ++ ++ IPNKF
Sbjct: 492 RVEG---WPRIDELQKVTSVSLHDCDIRELPEGLVCPKLEL-FGCYDVNTNLAVQIPNKF 547

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
           FE M Q++V++L+ + L SLP SL  L+NLRTL L+ CK+ DI ++  LKKLEIL L  S
Sbjct: 548 FEEMKQLKVLDLSRMQLPSLPLSLHCLTNLRTLCLNGCKVGDIVIIAKLKKLEILSLIDS 607

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
           +++ LP E+++L  LRLL L    +L+VIP+ V+S+LS LE L +  NSF +W  E EG 
Sbjct: 608 DMEQLPREIAQLTHLRLLDLSGSSKLKVIPSGVISSLSQLENLCMA-NSFTQW--EGEGK 664

Query: 238 KNASLHELK---HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWR------R 288
            NA L ELK   HLTSL++ I+D   LP+ + F  L RY+I +G  +    WR      +
Sbjct: 665 SNACLAELKHLSHLTSLDIQIRDAKLLPKDIVFDNLVRYRIFVGDVWS---WREIFETNK 721

Query: 289 ELKICP-DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH 347
            LK+   D+ + L DG+I  L+  EDL L +L        +++L   G  +LKHL++ + 
Sbjct: 722 TLKLNKLDTSLHLVDGIIKLLKRTEDLHLHELCGG--TNVLSKLDGEGFLKLKHLNVESS 779

Query: 348 PPNPAESKRREESTDVMQSH---EIILKVNVNALF----VEKVTLPK-----LENLELDS 395
           P    E +    S D+  SH    ++  +++N L     V +   P      L  +E+  
Sbjct: 780 P----EIQYIVNSMDLTPSHGAFPVMETLSLNQLINLQEVCRGQFPAGSFGCLRKVEVKD 835

Query: 396 INVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVI--FPQL 453
            +  +   S ++V  C+S     RL  I++  C  + E++    +E +++++ +  FP+L
Sbjct: 836 CDGLKFLFS-LSVARCLS-----RLVEIKVTRCESMVEMVSQGRKEIKEDTVNVPLFPEL 889

Query: 454 QYLKMDDLEKLRNFCTGDVDILEFPS 479
           ++L + DL KL NFC  +  +L  P+
Sbjct: 890 RHLTLQDLPKLSNFCFEENPVLSKPT 915

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 180/504 (35%), Positives = 262/504 (51%), Gaps = 73/504 (14%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQV 60
           +E A+ R+  LV  LKAS +LL+  +       MHDVVRDVAI I S    VFS   +++
Sbjct: 256 LEEAKNRIDTLVDSLKASKLLLD--TGHNSFVRMHDVVRDVAIAIVSKVHRVFSLREDEL 313

Query: 61  EGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
               EW     ++  T + L       LP  +  P+L+L F+        L IP  FFE 
Sbjct: 314 ---VEWPKMDELQTCTKMSLAYNDICELPIELVCPELEL-FLFYHTIDYHLKIPETFFEE 369

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M +++V++L+N++  SLPSSL  L+NLRTLSL+ CKL DI+++ +LKKLE     GSNI+
Sbjct: 370 MKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIE 429

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
            LP E+++L  LRL  LRDC +L  IP NV+S+LS LE L +  NSF  WEV  EG  NA
Sbjct: 430 KLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCM-ENSFTLWEV--EGKSNA 486

Query: 241 SLHELK---HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICP--- 294
           S+ E K   +LT+L++ I D   L   + F KL RY+I IG      VW  + K CP   
Sbjct: 487 SIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIG-----DVWSWD-KNCPTTK 540

Query: 295 -------DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH 347
                  D+ +RL DG+ + L+G +DL L +L          +L + G  QLK LH+   
Sbjct: 541 TLKLNKLDTSLRLADGISLLLKGAKDLHLREL--SGAANVFPKLDREGFLQLKCLHV--- 595

Query: 348 PPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS-INVERIWQSHV 406
                  +R  E   +M S + IL              P LE+L L+  IN++ +    +
Sbjct: 596 -------ERSPEMQHIMNSMDPILS---------PCAFPVLESLFLNQLINLQEVCHGQL 639

Query: 407 AV--------------------MSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNS 446
            V                     S        RL++IEI  C+ + ++ V + +E+  ++
Sbjct: 640 LVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYKM-VAQGKEDGDDA 698

Query: 447 I--VIFPQLQYLKMDDLEKLRNFC 468
           +  ++F +L+YL +  L KLRNFC
Sbjct: 699 VDAILFAELRYLTLQHLPKLRNFC 722

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 180/504 (35%), Positives = 262/504 (51%), Gaps = 73/504 (14%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQV 60
           +E A+ R+  LV  LKAS +LL+  +       MHDVVRDVAI I S    VFS   +++
Sbjct: 436 LEEAKNRIDTLVDSLKASKLLLD--TGHNSFVRMHDVVRDVAIAIVSKVHRVFSLREDEL 493

Query: 61  EGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
               EW     ++  T + L       LP  +  P+L+L F+        L IP  FFE 
Sbjct: 494 ---VEWPKMDELQTCTKMSLAYNDICELPIELVCPELEL-FLFYHTIDYHLKIPETFFEE 549

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M +++V++L+N++  SLPSSL  L+NLRTLSL+ CKL DI+++ +LKKLE     GSNI+
Sbjct: 550 MKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIE 609

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
            LP E+++L  LRL  LRDC +L  IP NV+S+LS LE L +  NSF  WEV  EG  NA
Sbjct: 610 KLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCM-ENSFTLWEV--EGKSNA 666

Query: 241 SLHELK---HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICP--- 294
           S+ E K   +LT+L++ I D   L   + F KL RY+I IG      VW  + K CP   
Sbjct: 667 SIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIG-----DVWSWD-KNCPTTK 720

Query: 295 -------DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH 347
                  D+ +RL DG+ + L+G +DL L +L          +L + G  QLK LH+   
Sbjct: 721 TLKLNKLDTSLRLADGISLLLKGAKDLHLREL--SGAANVFPKLDREGFLQLKCLHV--- 775

Query: 348 PPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS-INVERIWQSHV 406
                  +R  E   +M S + IL              P LE+L L+  IN++ +    +
Sbjct: 776 -------ERSPEMQHIMNSMDPILS---------PCAFPVLESLFLNQLINLQEVCHGQL 819

Query: 407 AV--------------------MSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNS 446
            V                     S        RL++IEI  C+ + ++ V + +E+  ++
Sbjct: 820 LVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYKM-VAQGKEDGDDA 878

Query: 447 I--VIFPQLQYLKMDDLEKLRNFC 468
           +  ++F +L+YL +  L KLRNFC
Sbjct: 879 VDAILFAELRYLTLQHLPKLRNFC 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera]

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 182/520 (35%), Positives = 278/520 (53%), Gaps = 81/520 (15%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNE-- 58
           +E A+ R+  LV  LK+S +LL   +    +  MHD+VR  A  IAS + +VF+  N   
Sbjct: 433 LEEAKNRIDTLVGNLKSSNLLLE--TGHNAVVRMHDLVRSTARKIASDQHHVFTLQNTTV 490

Query: 59  QVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICAD-QESSSLTIPNKF 117
           +VEG   W     ++  T + LHD   + LPE +  P+L+L F C D   +S++ IPNKF
Sbjct: 491 RVEG---WPRIDELQKVTWVSLHDCDIHELPEGLVCPKLEL-FGCYDVNTNSAVQIPNKF 546

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
           FE M Q++V++L+ + L SLP SL  L+NLRTL LD CK+ DI ++  LKKLEIL L+ S
Sbjct: 547 FEEMKQLKVLDLSRMQLPSLPLSLHCLTNLRTLCLDGCKVGDIVIIAKLKKLEILSLKDS 606

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
           +++ LP E+++L  LRLL L    +L+VIP++V+S+LS LE L +  NSF +WE E +  
Sbjct: 607 DMEQLPREIAQLTHLRLLDLSGSSKLKVIPSDVISSLSQLENLCMA-NSFTQWEGEAK-- 663

Query: 238 KNASLHELK---HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWR------R 288
            NA L ELK   HLTSL++ I+D   LP+ + F  L RY+I +G  +    WR      +
Sbjct: 664 SNACLAELKHLSHLTSLDIQIRDAKLLPKDIVFDNLVRYRIFVGDVWR---WRENFETNK 720

Query: 289 ELKICP-DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH 347
            LK+   D+ + L  G+I  L+  EDL L +L        +++L   G  +LKHL++ + 
Sbjct: 721 TLKLNKFDTSLHLVHGIIKLLKRTEDLHLREL--CGGTNVLSKLDGEGFLKLKHLNVESS 778

Query: 348 PPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS-INVERIWQSHV 406
           P    E +    S D+  SH                  P +E L L+  IN++ + +   
Sbjct: 779 P----EIQYIVNSMDLTPSHG---------------AFPVMETLSLNQLINLQEVCRGQF 819

Query: 407 AVMSCVSNNTFVRLQRIEIKNCRVLEEL-------------------------IVVENQE 441
              S      F  L+++E+K+C  L+ L                         +V + ++
Sbjct: 820 PAGS------FGYLRKVEVKDCNGLKCLFSLSVARGLSRLEEIKVTRCESMVEMVSQGRK 873

Query: 442 ERKNSIV---IFPQLQYLKMDDLEKLRNFCTGDVDILEFP 478
           E K + V   +FP+L+ L ++DL KL NFC  +  +L  P
Sbjct: 874 EIKEAAVNVPLFPELRSLTLEDLPKLSNFCFEENPVLSKP 913

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 253/447 (56%), Gaps = 50/447 (11%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQV 60
           ++ AR R+  +V+ LK SC+LL       +   MHDVV + A L+AS + +VF+   +  
Sbjct: 384 VKAARNRLLKVVNDLKRSCLLLE--GDDDDEVRMHDVVHNFATLVASRDHHVFAVACDS- 440

Query: 61  EGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
            G  EW ++  ++ +T+I L D +   LPEV E P L+   +    + SSL IP+ FF R
Sbjct: 441 -GLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLY--NKDSSLKIPDNFFSR 497

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M ++++++L+N++L  +P SL  L NL+TL LD C L DI  + +LKKL++L   GS + 
Sbjct: 498 MKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAAIGELKKLQVLSFIGSTMV 557

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV-EMEGVK- 238
            LP EV +L RL+LL L  C++LEVIP  VLS L+ LEELY+G NSF +WE  E +G + 
Sbjct: 558 QLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMG-NSFVQWESEEHDGDRN 616

Query: 239 NASLHELK---HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIG------GYYYAGVWRRE 289
           NASL ELK   +L +LELHI +   LPR +F  KL  YK+ IG      G Y A    R 
Sbjct: 617 NASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIGEEWSWFGKYEAS---RT 673

Query: 290 LKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP 349
           LK+  +S I + + + V L   EDL L +L  + V   + EL   G  QLKHLHI N   
Sbjct: 674 LKLKLNSSIEI-EKVKVLLMTTEDLYLDEL--EGVRNVLYELDGQGFPQLKHLHIQN--- 727

Query: 350 NPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQ-SHVAV 408
                           S EI   V+  ++    +  P+LE+L +D++N   + Q  +  +
Sbjct: 728 ----------------SSEIQYIVDCLSMGNHYIAFPRLESLLVDNLN--NLGQICYGQL 769

Query: 409 MSCVSNNTFVRLQRIEIKNCRVLEELI 435
           MS     +F +L+++++++C  L+ L 
Sbjct: 770 MS----GSFSKLRKLKVEHCNALKNLF 792

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143590|emb|CBI22343.3| unnamed protein product [Vitis vinifera]

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 172/501 (34%), Positives = 272/501 (54%), Gaps = 63/501 (12%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNE-- 58
           +E  + R+  LV+ LK+S +LL   +    +  MHD+VR  A  IAS + +VF+  N   
Sbjct: 434 LEEVKNRIDTLVNNLKSSNLLLE--TGHNAVVRMHDLVRSTARKIASDQHHVFTLQNTTV 491

Query: 59  QVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICAD-QESSSLTIPNKF 117
           +VEG   W     ++  T + LHD   + LPE +  P+L+L F C D   +S++ IPN F
Sbjct: 492 RVEG---WPRIDELQKVTWVSLHDCDIHELPEGLVCPKLEL-FGCYDVNTNSAVQIPNNF 547

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
           FE M Q++V++L+ + L SLP SL  L+NLRTL LD CK+ DI ++  LKKLEIL L  S
Sbjct: 548 FEEMKQLKVLHLSRMQLPSLPLSLQCLTNLRTLCLDGCKVGDIVIIAKLKKLEILSLMDS 607

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
           +++ LP E+++L  LR+L L    +L+VIP++V+S+LS LE L +  NSF +W  E EG 
Sbjct: 608 DMEQLPREIAQLTHLRMLDLSGSSKLKVIPSDVISSLSQLENLCMA-NSFTQW--EGEGK 664

Query: 238 KNASLHELK---HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYY-YAGVWR--RELK 291
            NA L ELK   HLTSL++ I D   LP+ + F  L RY+I +G  + + G++     LK
Sbjct: 665 SNACLAELKHLSHLTSLDIQIPDAKLLPKDIVFDTLVRYRIFVGDVWSWGGIFEANNTLK 724

Query: 292 ICP-DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN 350
           +   D+ + L DG+   L+  EDL L +L      + +++L + G  +LKHL++ + P  
Sbjct: 725 LNKFDTSLHLVDGISKLLKRTEDLHLRELC--GFTHVLSKLNREGFLKLKHLNVESSP-- 780

Query: 351 PAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS-INVERIWQSHVAVM 409
             E +    S D+  +H +                P +E L L+  IN++ +        
Sbjct: 781 --EIQYIANSMDLTSTHGV---------------FPVMETLSLNQLINLQEVCHGQFPAG 823

Query: 410 S--CVSN------------------NTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVI 449
           S  C+                        RL  I++  C+ + E++    +E +++++ +
Sbjct: 824 SFGCLRKVEVEDCDGLKFLFSLSVARGLSRLVEIKVTRCKSMVEMVSQGRKEIKEDTVNV 883

Query: 450 --FPQLQYLKMDDLEKLRNFC 468
             FP+L++L + DL KL NFC
Sbjct: 884 PLFPELRHLTLQDLPKLSNFC 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 189/501 (37%), Positives = 274/501 (54%), Gaps = 66/501 (13%)

Query: 1   MEVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQV 60
           +E A+ RVH+LVHKLKAS +LL + S  +  FSMHD VRDVAI IA  + +VF   +E V
Sbjct: 439 VEEAQDRVHSLVHKLKASGLLLENHSDWQ--FSMHDAVRDVAISIAFRDCHVFVGGDE-V 495

Query: 61  EGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFER 120
           E   +WS ++ +K Y  I L      LL E+ E PQLK L +    E  SL I +     
Sbjct: 496 EP--KWSAKNMLKKYKEIWLSS-NIELLREM-EYPQLKFLHV--RSEDPSLEISSNICRG 549

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M +++V+ LTNI+L+SLPS L  L NLRTL L    L +I  + +LKKLEIL    SNIK
Sbjct: 550 MHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGELKKLEILSFAKSNIK 609

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
            LP ++ +L +LR+L L DC EL+VIP N+ SNLS LEEL +G NSF  W    EG  NA
Sbjct: 610 HLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMG-NSFHHWAT--EGEDNA 666

Query: 241 SLHELK---HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYY-YAGVWR--RELKI-C 293
           SL EL    HLT++++H+ D + + +G+   +L+R++I IG  + + GV++  R LK+  
Sbjct: 667 SLVELDHLPHLTNVDIHVLDSHVMSKGMLSKRLERFRIFIGDVWDWDGVYQSLRTLKLKL 726

Query: 294 PDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE 353
             S   L+ G+++ L+  +DL L +L  + V+  V+EL   G  QL+HLH+ N       
Sbjct: 727 NTSASNLEHGVLMLLKRTQDLYLLEL--KGVNNVVSELDTEGFLQLRHLHLHN------- 777

Query: 354 SKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLEL-DSINVERIWQ--------- 403
                       S +I   +N ++ F   V  P LE+L L + +++E++           
Sbjct: 778 ------------SSDIQYIINTSSEFPSHV-FPVLESLFLYNLVSLEKLCHGILTAESFR 824

Query: 404 --SHVAVMSCVS---------NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVI--- 449
             + + V +CV               +LQ I I  C  +EE++  E  E   +   I   
Sbjct: 825 KLTIIEVGNCVKLKHLFPFSVARGLSQLQTINISFCLTMEEVVAEEGDEFEDSCTEIDVM 884

Query: 450 -FPQLQYLKMDDLEKLRNFCT 469
            F QL  L +  L  L+NFC+
Sbjct: 885 EFNQLSSLSLQCLPHLKNFCS 905

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.897	0.459	0.256	5.2e-17
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.906	0.498	0.24	1.3e-15
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.495	0.275	0.258	6.5e-09
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.431	0.243	0.261	1.7e-07
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.4	0.226	0.255	3.8e-05
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.421	0.239	0.251	6e-05
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.134	0.076	0.361	0.00016
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.148	0.062	0.333	0.00018

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 5.2e-17, P = 5.2e-17
 Identities = 125/488 (25%), Positives = 204/488 (41%)

Query:    12 VHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDESA 71
             V  LK  C+L +    +++   MHDVVRD AI I S+ Q+   +      G ++   +  
Sbjct:   442 VESLKDYCLLED--GDRRDTVKMHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKL 499

Query:    72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINL-- 129
                   + L + +   LP++VE   +K   +          +P  F +    +R++NL  
Sbjct:   500 APSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSG 559

Query:   130 TNINXXXXXXXXXXXXXXXXXXXDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSEL 189
             T I                    D  KL+ +  +  L KLE+L L G++I   P  + EL
Sbjct:   560 TRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEEL 619

Query:   190 ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN-ASLHE---L 245
              R R L L     LE IPA V+S LS LE L +  + + +W V+ E  K  A++ E   L
Sbjct:   620 KRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHY-RWSVQGETQKGQATVEEIGCL 678

Query:   246 KHLT--SLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVW--RRELKICPDSKIRLK 301
             + L   S+ LH        R  +  +L+++++ +G  Y       +R L I   +  ++ 
Sbjct:   679 QRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYILRTRHDKRRLTISHLNVSQVS 738

Query:   302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAK--VGPSQLKHLHIWNHPPNPAESKRREE 359
              G +  L     L L+    Q ++  + +L     G   LK L I N   N         
Sbjct:   739 IGWL--LAYTTSLALNHC--QGIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVS 794

Query:   360 STDVMQSHEII-LKVNVNALFVEKV---TLPKLEN---LELDSINVERIWQSHVAVMSCV 412
             +    QS +I+ L  N+  L + +V   T  +L+    L+L+++ +  I           
Sbjct:   795 TNTSKQSSDILDLLPNLEELHLRRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLD 854

Query:   413 SNN--TFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCT- 469
               N  T   L+ IEI  C  L+ L      E         P L+ LK+ +L  L + C  
Sbjct:   855 KRNFLTIPNLEEIEISYCDSLQNL-----HEALLYHQPFVPNLRVLKLRNLPNLVSICNW 909

Query:   470 GDV-DILE 476
             G+V + LE
Sbjct:   910 GEVWECLE 917

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 120/500 (24%), Positives = 217/500 (43%)

Query:    11 LVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVEGYREWSDES 70
             LV +LK SC+L +      +   MHDVVRD AI   S++   F +      G  E+  + 
Sbjct:   410 LVERLKDSCLLED--GDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDK 467

Query:    71 AIKLYTSIVLHDIRTNLLPE-VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINL 129
              +     + L   +   LP  V+E  +  +L +  +       +PN F +    +R+++L
Sbjct:   468 FVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKE--VPNGFLQAFPNLRILDL 525

Query:   130 TNINXXXXXXXXXXXXXXXXXXXDNCKLL-DITVVRDLKKLEILCLRGSNIKMLPIEVSE 188
             + +                     NCK L ++  +  L KL+ L L  S I+ LP  +  
Sbjct:   526 SGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEA 585

Query:   189 LARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV---EMEGVKNASLHEL 245
             L+ LR + + +  +L+ IPA  +  LS LE L +  +++  W +   E EG   A+L E+
Sbjct:   586 LSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYS-WGIKGEEREG--QATLDEV 642

Query:   246 KHLTSLE-LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGL 304
               L  L+ L IK ++ L     F  L + ++    + ++ +         +  + + D +
Sbjct:   643 TCLPHLQFLAIKLLDVLSFSYEFDSLTK-RLTKFQFLFSPIRSVSPPGTGEGCLAISD-V 700

Query:   305 IVQLQGIEDLGLSKLPEQDVDY-------FVNELAKVGPS--QLKHLHIWNHPPNPAESK 355
              V    I  L L  +   D++Y       F N + K   S   +K L I ++ P+ + + 
Sbjct:   701 NVSNASIGWL-LQHVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALSI-HYFPSLSLAS 758

Query:   356 RREESTDVMQSHEIILKVNVNALFVEKVT------LPKLENLELDSIN-VERIWQSHVAV 408
               E   D+  + E +   NVN   + ++       L KL+ L++     ++R++   +  
Sbjct:   759 GCESQLDLFPNLEELSLDNVNLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILA 818

Query:   409 MSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFC 468
                    T   LQ I++ +C  LEEL    +      +  + P+L  +K+  L +LR+ C
Sbjct:   819 ------GTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLC 872

Query:   469 TGDVDILEFPSLKELIINRC 488
                V +LE  SL+ L +  C
Sbjct:   873 NDRV-VLE--SLEHLEVESC 889

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
 Identities = 72/279 (25%), Positives = 123/279 (44%)

Query:    11 LVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATN--EQVEGYREWSD 68
             L+  LKA+C+L      +K    MH+VVR  A+ +AS EQ  +      E   G+ E   
Sbjct:   450 LIGDLKAACLL--ETGDEKTQVKMHNVVRSFALWMAS-EQGTYKELILVEPSMGHTEAPK 506

Query:    69 ESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLT-IPNKFFERMMQVRVI 127
                 +    I L D R   LPE +  P+L  L +   Q++SSL  IP  FF  M  +RV+
Sbjct:   507 AENWRQALVISLLDNRIQTLPEKLICPKLTTLML---QQNSSLKKIPTGFFMHMPVLRVL 563

Query:   128 NLTNINXXXXXXXXXXXXXXXXXXXDNCKLLDITV-VRDLKKLEILCLRGSN-IKMLPIE 185
             +L+  +                      K+  +   + +L+KL+ L L+ +  ++ +P +
Sbjct:   564 DLSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRD 623

Query:   186 -VSELARLRLLGLRDCR---ELEVIPANVLSNLSHLEELYI-GYNSFGKWEVEMEGVKN- 239
              +  L++L +L L       EL+    +    L   +  Y+    + G   + +E +K  
Sbjct:   624 AICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTL 683

Query:   240 ---ASLHELKHLTSLELHIKDVNTLPRGLFF--PKLQRY 273
                 +LH  KH+    LH+++ N L   L+F  P L  +
Sbjct:   684 FEFGALH--KHIQ--HLHVEECNEL---LYFNLPSLTNH 715

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 61/233 (26%), Positives = 104/233 (44%)

Query:     2 EVARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQNVFSATNEQVE 61
             E A ++ + ++  L  +C+LL     K+++  MHDVVR++A+ IAS           QV 
Sbjct:   445 ERALSQGYEIIGILVRACLLLEEAINKEQV-KMHDVVREMALWIASDLGEHKERCIVQVG 503

Query:    62 -GYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQ-LKLLFICADQESSSLTIPNKFFE 119
              G RE      +K ++S+    +  N +  +  SP+ L+L  +   +  S L I ++FF 
Sbjct:   504 VGLRE---VPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFR 560

Query:   120 RMMQVRVINLTNINXXXXXXXXXXXXXXXXXXXD----NCKLLDITVVRDLKKLEILCLR 175
              +  + V++L+  N                   D      K L + + ++LKKL  L L 
Sbjct:   561 CIPMLVVLDLSG-NSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGL-QELKKLRYLRLD 618

Query:   176 G-SNIKMLPIEVSELARLRLLGLRDCR-ELEVIPANVLSNLSHLEELYIGYNS 226
                 +K +   +S ++ LR L L   +  L++     L  L HLE L I   S
Sbjct:   619 YMKRLKSIS-GISNISSLRKLQLLQSKMSLDMSLVEELQLLEHLEVLNISIKS 670

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
 Identities = 58/227 (25%), Positives = 104/227 (45%)

Query:     9 HALVHKLKASCMLLNHISQKKELFSMHDVVRDVAI-LIASTEQNVFSATNEQVEGYREWS 67
             + ++  L  +C+L      K E+  MHDVVR++A+  ++   +N      +   G R+  
Sbjct:   450 YEILGTLVRACLLSEEGKNKLEV-KMHDVVREMALWTLSDLGKNKERCIVQAGSGLRK-- 506

Query:    68 DESAIKLYTSIVLHDIRTNLLPEVV---ESPQLKLLFICADQESSSLT-IPNKFFERMMQ 123
                 ++ + ++    +  N + E+    E P+L  LF+   QE+ SL  I  +FF  M +
Sbjct:   507 -VPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFL---QENKSLVHISGEFFRHMRK 562

Query:   124 VRVINLTN---INXXXXXXXXXXXXXXXXXXXDNCKLLDITVVRDLKKL---EILCLRGS 177
             + V++L+    ++                    N + L    ++DLK L    + C+R  
Sbjct:   563 LVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLP-ACLQDLKTLIHLNLECMR-- 619

Query:   178 NIKMLPIE-VSELARLRLLGLRDCR-ELEVIPANVLSNLSHLEELYI 222
               ++  I  +S+L+ LR LGLR+    L+V+    L  L HLE L I
Sbjct:   620 --RLGSIAGISKLSSLRTLGLRNSNIMLDVMSVKELHLLEHLEILTI 664

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
 Identities = 56/223 (25%), Positives = 96/223 (43%)

Query:     9 HALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIAST--EQNVFSATNEQVEGYREW 66
             + ++  L  +C+LL     K  +  MHDVVR++A+ I+S   +Q         V G RE 
Sbjct:   453 YEIIGTLVRACLLLEEERNKSNV-KMHDVVREMALWISSDLGKQKEKCIVRAGV-GLRE- 509

Query:    67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRV 126
                  +K + ++    +  N + E+ +S +   L     Q++  + I  +FF  M  + V
Sbjct:   510 --VPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVV 567

Query:   127 INLT-NINXXXXXXXXXXXXXXXXXXXDNCKLLDITV-VRDLKKLEILCLRGSNIKMLPI 184
             ++L+ N +                       +  + V +  LKKL  L L   +     +
Sbjct:   568 LDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSIL 627

Query:   185 EVSELARLRLLGLRDCREL-EVIPANVLSNLSHLEELYIGYNS 226
              +S L  LR LGLRD R L ++     L  L HLE + +  +S
Sbjct:   628 GISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVITLDISS 670

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query:   419 RLQRIEIKNCRVLEELIVVENQEERKNS-IVIFPQLQYLKMDDLEKLRNFCTGDVDILEF 477
             +L+ + + + + LE++I  E   E ++S IV FP+L+YL +DDL KL+N        L F
Sbjct:   765 KLRSLSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRP---LPF 821

Query:   478 PSLKELIINRCP 489
               L+++ I  CP
Sbjct:   822 LCLEKITIGECP 833

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 79 (32.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query:   165 DLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224
             ++  L  + L  +N+  LP ++SEL+ L+ L +R C +L+ +P     NL  L  L I +
Sbjct:   747 EMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLP-----NLEKLTNLEI-F 800

Query:   225 NSFGKWEVE-MEG-VKNAS-LHEL 245
             +  G  E+E +EG  +N S LH++
Sbjct:   801 DVSGCTELETIEGSFENLSCLHKV 824

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009673001 SubName- Full=Chromosome undetermined scaffold_244, whole genome shotgun sequence; (911 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	505
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 110 SLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL-----LDITVVR 164
           S  IP+  F     +R +NL+N N  +     G + NL TL L N  L      DI    
Sbjct: 106 SGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 165 DLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222
            LK L++    G N+ +  +P  ++ L  L  L L   + +  IP   L  +  L+ +Y+
Sbjct: 165 SLKVLDL----GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYL 219

Query: 223 GYNS 226
           GYN+
Sbjct: 220 GYNN 223

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 123 QVRVINLTNINLMSLPSSLGLL-SNLRTLSLDNCKLLDI-TVVRDLKKLEILCLRGSNIK 180
            +  ++L N N+  +P  +GLL SNL+ L L + K+  + + +R+L  L+ L L  +++ 
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
            LP  +S L+ L  L L   + +  +P   +  LS LEEL +  NS
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNK-ISDLP-PEIELLSALEELDLSNNS 220

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 128 NLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLK-KLEILCLRGSNIKMLPIEV 186
           +L+  +L  LP  L  LSNL  L L   K+ D+    +L   LE L L  ++I  L   +
Sbjct: 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL 228

Query: 187 SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           S L  L  L L + +  ++     + NLS+LE L +  N
Sbjct: 229 SNLKNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 191 RLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS 250
            L+ L L + R L VIP      L +L+ L +  N+          +   +   L  L S
Sbjct: 1   NLKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNL-------TSISPEAFSGLPSLRS 52

Query: 251 LELH 254
           L+L 
Sbjct: 53  LDLS 56

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 146 NLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP 183
           NL TL L N ++ D+  + +L  LE L L G+ I  L 
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	505
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.33
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
KOG4341	483	consensus F-box protein containing LRR [General fu	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.83
KOG4341	483	consensus F-box protein containing LRR [General fu	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
PLN03150	623	hypothetical protein; Provisional	98.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.34
PLN03150	623	hypothetical protein; Provisional	98.33
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.07
PRK15386	426	type III secretion protein GogB; Provisional	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.85
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.74
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.15
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.64
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.18
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.67
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.39
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.79
smart00370	26	LRR Leucine-rich repeats, outliers.	88.79
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.3

>PLN03210 Resistant to P

Probab=99.97  E-value=1.5e-29  Score=281.33  Aligned_cols=399  Identities=18%  Similarity=0.250  Sum_probs=244.1

Q ss_pred             HHHHHHhhccccccccccccCcEEeehhhHHHHHHHHhccc------ceEEEeccccc------cCCC------------
Q 037920           10 ALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQ------NVFSATNEQVE------GYRE------------   65 (505)
Q Consensus        10 ~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~~e~------~~~~~~~~~~~------~~~~------------   65 (505)
                      .-++.|+++||++...    +.++|||++|+||+++++++.      .++....+..+      +-+.            
T Consensus       470 ~~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~  545 (1153)
T PLN03210        470 IGLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID  545 (1153)
T ss_pred             hChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence            3488999999998764    579999999999999998763      11111100000      0000            


Q ss_pred             -----CCcccccCCCcEEEecCCCCc-------cCCCCC-C-CCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeC
Q 037920           66 -----WSDESAIKLYTSIVLHDIRTN-------LLPEVV-E-SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN  131 (505)
Q Consensus        66 -----~~~~~~~~~l~~l~l~~~~~~-------~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  131 (505)
                           ......+++++.|.+..+...       .+|... . ..+|+.|.+   .......+|..+  .+.+|+.|++++
T Consensus       546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~---~~~~l~~lP~~f--~~~~L~~L~L~~  620 (1153)
T PLN03210        546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRW---DKYPLRCMPSNF--RPENLVKLQMQG  620 (1153)
T ss_pred             eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEe---cCCCCCCCCCcC--CccCCcEEECcC
Confidence                 011234556666666443221       122222 2 245777777   445566666654  467888888888


Q ss_pred             CcCccCcccccCCCCCCeeEeeccC-CCCcccccCCCCCcEEEccCC-CCcccchhhhCCCCCCEEeeeCCCCCCccChh
Q 037920          132 INLMSLPSSLGLLSNLRTLSLDNCK-LLDITVVRDLKKLEILCLRGS-NIKMLPIEVSELARLRLLGLRDCRELEVIPAN  209 (505)
Q Consensus       132 ~~~~~l~~~l~~l~~L~~L~L~~~~-l~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~  209 (505)
                      +.+..++..+..+++|++|+++++. +..++.++.+++|++|++++| .+..+|..+.++++|+.|++++|+.++.+|..
T Consensus       621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            8888888778888888888888776 444566778888888888887 56778888888888888888888888888875


Q ss_pred             hhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccce
Q 037920          210 VLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRE  289 (505)
Q Consensus       210 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~  289 (505)
                        ..+++|+.|++++|..       .+.+|.   ...+|+.|+++++.+..+|..+.+++|+.|.+......        
T Consensus       701 --i~l~sL~~L~Lsgc~~-------L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~--------  760 (1153)
T PLN03210        701 --INLKSLYRLNLSGCSR-------LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE--------  760 (1153)
T ss_pred             --CCCCCCCEEeCCCCCC-------cccccc---ccCCcCeeecCCCccccccccccccccccccccccchh--------
Confidence              2788888888887754       223332   23568888888888888887776777777776421100        


Q ss_pred             EEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhh
Q 037920          290 LKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEI  369 (505)
Q Consensus       290 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~  369 (505)
                       .+. .............+++|+.|++++|  .....+|..+  ..+++|+.|++++|..+..     +           
T Consensus       761 -~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n--~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~-----L-----------  818 (1153)
T PLN03210        761 -KLW-ERVQPLTPLMTMLSPSLTRLFLSDI--PSLVELPSSI--QNLHKLEHLEIENCINLET-----L-----------  818 (1153)
T ss_pred             -hcc-ccccccchhhhhccccchheeCCCC--CCccccChhh--hCCCCCCEEECCCCCCcCe-----e-----------
Confidence             000 0001111112223578999999998  7778888888  7899999999999873210     0           


Q ss_pred             hhhcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccc
Q 037920          370 ILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIV  448 (505)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~  448 (505)
                                +....+++|+.|++++| .+..++            ...++|++|+++++. ++.+  +..       ..
T Consensus       819 ----------P~~~~L~sL~~L~Ls~c~~L~~~p------------~~~~nL~~L~Ls~n~-i~~i--P~s-------i~  866 (1153)
T PLN03210        819 ----------PTGINLESLESLDLSGCSRLRTFP------------DISTNISDLNLSRTG-IEEV--PWW-------IE  866 (1153)
T ss_pred             ----------CCCCCccccCEEECCCCCcccccc------------ccccccCEeECCCCC-CccC--hHH-------Hh
Confidence                      11113555566666655 444432            112445555555443 4433  221       12


Q ss_pred             cccccccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920          449 IFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR  494 (505)
Q Consensus       449 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~  494 (505)
                      .+++|+.|++.+|+++++++.   ....++.|+.+++++|++|+.+
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccCc---ccccccCCCeeecCCCcccccc
Confidence            345555555555555555433   2444555555555555555443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=2.1e-26  Score=255.75  Aligned_cols=384  Identities=17%  Similarity=0.189  Sum_probs=204.5

Q ss_pred             cccCCCcEEEecCCCCc-cCCCC-C-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCC
Q 037920           70 SAIKLYTSIVLHDIRTN-LLPEV-V-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLS  145 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~-~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~  145 (505)
                      ..+++++.|++++|.+. .+|.. . .+++|+.|++  +++...+.+|.   ..+++|++|++++|.+.. +|..++.++
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L--s~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL--SNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEEC--cCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence            45677888888887774 45543 2 6777777777  44444444543   346677777777777653 666677777


Q ss_pred             CCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920          146 NLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI  222 (505)
Q Consensus       146 ~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  222 (505)
                      +|++|++++|.+..  |..++++++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++.+++|++|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence            77777777776654  566677777777777777655 45666777777777777765544556655 667777777777


Q ss_pred             eCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCCCCC-CCCCcEEEEEEcceeeccc-------ccceEEec
Q 037920          223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPRGLF-FPKLQRYKIHIGGYYYAGV-------WRRELKIC  293 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~-~~~L~~L~~~~~~~~~~~~-------~~~~l~l~  293 (505)
                      ++|.+       .+..|..+.++++|+.|+++.|.+. .+|..+. +++|+.|+++.+.......       ....+.+.
T Consensus       244 ~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        244 VYNNL-------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             cCcee-------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            76665       3455566666666666666666654 3444443 5666666654332110000       00002222


Q ss_pred             CCCCc-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC--Ccccccccc-chhcchhhhh
Q 037920          294 PDSKI-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN--PAESKRREE-STDVMQSHEI  369 (505)
Q Consensus       294 ~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~--~~~~l~~L~-l~~l~~~~~~  369 (505)
                      .+... ..+..+ ..+++|+.|++++|  .....+|..+  ..+++|+.|++++|.-.  ....+..+. ++.+.+..+.
T Consensus       317 ~n~~~~~~~~~~-~~l~~L~~L~L~~n--~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        317 SNNFTGKIPVAL-TSLPRLQVLQLWSN--KFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             CCccCCcCChhH-hcCCCCCEEECcCC--CCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence            21111 112222 23566777777666  4444556555  55666777777666511  011111111 2223333333


Q ss_pred             hhhccccccccccccccccccccccccccccccccce---------eeccC-------ccccccccccEEEEcccccccc
Q 037920          370 ILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHV---------AVMSC-------VSNNTFVRLQRIEIKNCRVLEE  433 (505)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---------~v~~c-------~~l~~l~~L~~L~l~~c~~l~~  433 (505)
                      +.+...    .....+++|+.|++++|++....+..+         .++.+       .....+++|++|++++|.....
T Consensus       392 l~~~~p----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  467 (968)
T PLN00113        392 LEGEIP----KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG  467 (968)
T ss_pred             ecccCC----HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence            322110    111234555555555554432211000         00000       0023455666666666553322


Q ss_pred             ceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccC
Q 037920          434 LIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRC  488 (505)
Q Consensus       434 i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C  488 (505)
                      +  +.        ....++|+.|++++|.--..++   ..+..+++|+.|++++|
T Consensus       468 ~--p~--------~~~~~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N  509 (968)
T PLN00113        468 L--PD--------SFGSKRLENLDLSRNQFSGAVP---RKLGSLSELMQLKLSEN  509 (968)
T ss_pred             c--Cc--------ccccccceEEECcCCccCCccC---hhhhhhhccCEEECcCC
Confidence            2  11        1123677777777776433332   24667888898988887

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=3.1e-26  Score=254.47  Aligned_cols=385  Identities=17%  Similarity=0.177  Sum_probs=216.1

Q ss_pred             cccCCCcEEEecCCCCc-cCCCC-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCC
Q 037920           70 SAIKLYTSIVLHDIRTN-LLPEV-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSN  146 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~  146 (505)
                      ..++++++|++++|.+. .+|.. ..+++|++|++  .++.....+|.. +.++++|++|++++|.+.. +|..++++++
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L--~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL--GGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKS  213 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEEC--ccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence            35678888999888884 44543 37888888888  444444556655 4778888888888888765 6777888888


Q ss_pred             CCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920          147 LRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG  223 (505)
Q Consensus       147 L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  223 (505)
                      |++|++++|.+..  |..++++++|++|++++|+++ .+|..++++++|+.|++++|...+.+|.. +..+++|++|+++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls  292 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLS  292 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECc
Confidence            8888888888765  677788888888888888765 45777778888888888775554556655 6777777777777


Q ss_pred             CCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCCCCC-CCCCcEEEEEEcceee-------------------
Q 037920          224 YNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPRGLF-FPKLQRYKIHIGGYYY-------------------  282 (505)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~-~~~L~~L~~~~~~~~~-------------------  282 (505)
                      +|.+       .+.+|..+..+++|+.|++++|.+. .+|..+. +++|+.|++..+....                   
T Consensus       293 ~n~l-------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        293 DNSL-------SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             CCee-------ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence            7765       3344444555555555555555443 2333222 4444444443221110                   


Q ss_pred             ---ccccc---------ceEEecCCCCc-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC
Q 037920          283 ---AGVWR---------RELKICPDSKI-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP  349 (505)
Q Consensus       283 ---~~~~~---------~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~  349 (505)
                         .+..+         ..+.+..+.-. ..+..+. .+++|+.|++.+|  .....+|..+  ..+++|+.|++++|.-
T Consensus       366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n--~l~~~~p~~~--~~l~~L~~L~Ls~N~l  440 (968)
T PLN00113        366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDN--SFSGELPSEF--TKLPLVYFLDISNNNL  440 (968)
T ss_pred             CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCC--EeeeECChhH--hcCCCCCEEECcCCcc
Confidence               00000         00111111100 1112222 2456666666665  3333444444  4555666666655541


Q ss_pred             CC-----ccccccccchhcchhhhhhhhccccc-------------------cccccccccccccccccccccccccccc
Q 037920          350 NP-----AESKRREESTDVMQSHEIILKVNVNA-------------------LFVEKVTLPKLENLELDSINVERIWQSH  405 (505)
Q Consensus       350 ~~-----~~~l~~L~l~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~  405 (505)
                      ..     ...+++  ++.+.+..+.+.+.....                   .......+++|+.|++++|++....+. 
T Consensus       441 ~~~~~~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-  517 (968)
T PLN00113        441 QGRINSRKWDMPS--LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-  517 (968)
T ss_pred             cCccChhhccCCC--CcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-
Confidence            10     011111  122233333222211000                   000111344445555555433322110 


Q ss_pred             eeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceec
Q 037920          406 VAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELII  485 (505)
Q Consensus       406 ~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i  485 (505)
                             .+..+++|++|++++|.....+  +..       ...+++|+.|++++|.-...++.   .+..+++|+.|++
T Consensus       518 -------~~~~l~~L~~L~Ls~N~l~~~~--p~~-------~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~l  578 (968)
T PLN00113        518 -------ELSSCKKLVSLDLSHNQLSGQI--PAS-------FSEMPVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNI  578 (968)
T ss_pred             -------HHcCccCCCEEECCCCcccccC--Chh-------HhCcccCCEEECCCCcccccCCh---hHhcCcccCEEec
Confidence                   0455677777777777632222  221       23568899999998886555443   5777899999999


Q ss_pred             ccCccce
Q 037920          486 NRCPEFL  492 (505)
Q Consensus       486 ~~C~~L~  492 (505)
                      ++|+-..
T Consensus       579 s~N~l~~  585 (968)
T PLN00113        579 SHNHLHG  585 (968)
T ss_pred             cCCccee
Confidence            9986443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.94  E-value=2.6e-26  Score=243.02  Aligned_cols=192  Identities=29%  Similarity=0.427  Sum_probs=150.8

Q ss_pred             hHHHHHHHHHHHHHhhccccccccc-cccCcEEeehhhHHHHHHHHh-----cccceEEEeccccccCCCCCcccccCCC
Q 037920            2 EVARARVHALVHKLKASCMLLNHIS-QKKELFSMHDVVRDVAILIAS-----TEQNVFSATNEQVEGYREWSDESAIKLY   75 (505)
Q Consensus         2 ~~~~~~~~~~~~~Li~~~l~~~~~~-~~~~~~~mHdli~dla~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~l   75 (505)
                      +.|+++|.+|+++|++++|++...+ ++..+|+|||+|||+|.++++     +|..+  +..+.  +....+....+..+
T Consensus       450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i--v~~~~--~~~~~~~~~~~~~~  525 (889)
T KOG4658|consen  450 ETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI--VSDGV--GLSEIPQVKSWNSV  525 (889)
T ss_pred             cchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE--EECCc--Cccccccccchhhe
Confidence            3578999999999999999999874 346899999999999999999     66533  23222  34556677778899


Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCC-CccccChhHHhCCCCccEEEEeCCc-CccCcccccCCCCCCeeEee
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQES-SSLTIPNKFFERMMQVRVINLTNIN-LMSLPSSLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L~L~  153 (505)
                      |++++.++.+..++....+++|++|.+  ..+. ....++..+|..++.|++||+++|. +.++|.+++.|.+||||+++
T Consensus       526 rr~s~~~~~~~~~~~~~~~~~L~tLll--~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSENPKLRTLLL--QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             eEEEEeccchhhccCCCCCCccceEEE--eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            999999999999988888899999999  4444 3778888889999999999999765 66788888888888888888


Q ss_pred             ccCCCC-cccccCCCCCcEEEccCCC-CcccchhhhCCCCCCEEeeeC
Q 037920          154 NCKLLD-ITVVRDLKKLEILCLRGSN-IKMLPIEVSELARLRLLGLRD  199 (505)
Q Consensus       154 ~~~l~~-~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~  199 (505)
                      ++.+.. |.++++++.|.+|++..+. +...|.....+++||+|.+..
T Consensus       604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            877777 7777777777777777663 334444444567777776655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=2.6e-26  Score=221.66  Aligned_cols=355  Identities=20%  Similarity=0.257  Sum_probs=272.9

Q ss_pred             ccccCCCcEEEecCCCC--ccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCC
Q 037920           69 ESAIKLYTSIVLHDIRT--NLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLS  145 (505)
Q Consensus        69 ~~~~~~l~~l~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~  145 (505)
                      ...++-+|.+++++|.+  ..+|... .++.++.|.+   +......+|+.+ +.+.+|+.|.+.+|.+.++...++.++
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkL---nrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp   78 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKL---NRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLP   78 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEe---chhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccch
Confidence            34677789999999999  5677665 8999999999   777888999986 899999999999999999888999999


Q ss_pred             CCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920          146 NLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI  222 (505)
Q Consensus       146 ~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  222 (505)
                      .||.+.+..|.+..   |..|.++..|.+||++.|+++.+|..+...+++-.|++++ +.+..+|...+-+++.|-.|++
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcc
Confidence            99999999999766   7999999999999999999999999999999999999999 7889999887889999999999


Q ss_pred             eCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-----CCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCC
Q 037920          223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-----TLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSK  297 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~  297 (505)
                      ++|.+.        .+|..+..+.+|++|.+++|.+.     .+|+   +++|+.|.++...-               ..
T Consensus       158 S~NrLe--------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqR---------------Tl  211 (1255)
T KOG0444|consen  158 SNNRLE--------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQR---------------TL  211 (1255)
T ss_pred             ccchhh--------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccc---------------hh
Confidence            999874        45667888999999999998764     3443   55666655542211               11


Q ss_pred             ccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc--------chhcchhhhh
Q 037920          298 IRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE--------STDVMQSHEI  369 (505)
Q Consensus       298 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~--------l~~l~~~~~~  369 (505)
                      ..++.++.. +.+|..++++.|   .+..+|..+  -.+++|+.|++++|.      +.+|.        +..+.+++|.
T Consensus       212 ~N~Ptsld~-l~NL~dvDlS~N---~Lp~vPecl--y~l~~LrrLNLS~N~------iteL~~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  212 DNIPTSLDD-LHNLRDVDLSEN---NLPIVPECL--YKLRNLRRLNLSGNK------ITELNMTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hcCCCchhh-hhhhhhcccccc---CCCcchHHH--hhhhhhheeccCcCc------eeeeeccHHHHhhhhhhccccch
Confidence            122333433 788999999987   778888888  678999999999987      22222        2233333333


Q ss_pred             hhhcccccccccccccccccccccccc--ccccccccceeeccCccccccccccEEEEccccccccceeccccccccccc
Q 037920          370 ILKVNVNALFVEKVTLPKLENLELDSI--NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSI  447 (505)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~  447 (505)
                      +....     ...-.+++|++|...+|  .++.+|.|         ++.+.+|+++...++. ++-+  ++++.      
T Consensus       280 Lt~LP-----~avcKL~kL~kLy~n~NkL~FeGiPSG---------IGKL~~Levf~aanN~-LElV--PEglc------  336 (1255)
T KOG0444|consen  280 LTVLP-----DAVCKLTKLTKLYANNNKLTFEGIPSG---------IGKLIQLEVFHAANNK-LELV--PEGLC------  336 (1255)
T ss_pred             hccch-----HHHhhhHHHHHHHhccCcccccCCccc---------hhhhhhhHHHHhhccc-cccC--chhhh------
Confidence            33211     11124677788877777  45566655         7788888888777664 6555  55543      


Q ss_pred             ccccccccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920          448 VIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR  494 (505)
Q Consensus       448 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~  494 (505)
                       -|++|+.|.+.+.. |..   +|++++-+|.|+.|+++.-|+|..=
T Consensus       337 -RC~kL~kL~L~~Nr-LiT---LPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  337 -RCVKLQKLKLDHNR-LIT---LPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             -hhHHHHHhcccccc-eee---chhhhhhcCCcceeeccCCcCccCC
Confidence             46899999987766 333   5667889999999999999988654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-24  Score=208.92  Aligned_cols=335  Identities=16%  Similarity=0.181  Sum_probs=169.6

Q ss_pred             cCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCC
Q 037920           72 IKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLR  148 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~  148 (505)
                      ++..+.|++++|++..+...  .++++|+.+.+   ..+....+|... ....+|+.|++.+|.|+++. +++.-++.||
T Consensus        77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l---~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNL---NKNELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             ccceeeeeccccccccCcHHHHhcCCcceeeee---ccchhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            44566677777776544332  36666776666   555555665521 22334666666666555532 3455555556


Q ss_pred             eeEeeccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920          149 TLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN  225 (505)
Q Consensus       149 ~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  225 (505)
                      .|+|+.|.|+. + +++..-.++++|++++|+|+.+ ...|..+.+|-.|.++. +.++.+|...+.++++|+.|++..|
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc
Confidence            66665555555 2 4444445555555555555544 23445555555555555 4555555544555555555555555


Q ss_pred             CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEcc-------eeecccccceE--EecC
Q 037920          226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGG-------YYYAGVWRREL--KICP  294 (505)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~-------~~~~~~~~~~l--~l~~  294 (505)
                      .+...       ..-.|..+++|+.|.+..|++..+..+.+  +.++++|++..++       |-+.-.....|  +.+.
T Consensus       232 ~iriv-------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  232 RIRIV-------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             ceeee-------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence            44211       11234455555555555555554444443  5555555544321       10000000000  0000


Q ss_pred             CCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC--CCcccccccc-chhcchhhhhhh
Q 037920          295 DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP--NPAESKRREE-STDVMQSHEIIL  371 (505)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~--~~~~~l~~L~-l~~l~~~~~~~~  371 (505)
                      -..++...|  ...++|+.|+|++|   .+..+++.-. ..+..|+.|.++.|..  +....|..++ +..+++..|.+.
T Consensus       305 I~rih~d~W--sftqkL~~LdLs~N---~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  305 IQRIHIDSW--SFTQKLKELDLSSN---RITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             hheeecchh--hhcccceeEecccc---ccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence            111111111  22466666666665   3334333221 4456666666666651  1112222222 345666666666


Q ss_pred             hccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccc
Q 037920          372 KVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEEL  434 (505)
Q Consensus       372 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i  434 (505)
                      ++....-. ...++|+|++|.+.+|+++.++...        +..+++|++|++.+++ |..|
T Consensus       379 ~~IEDaa~-~f~gl~~LrkL~l~gNqlk~I~krA--------fsgl~~LE~LdL~~Na-iaSI  431 (873)
T KOG4194|consen  379 WCIEDAAV-AFNGLPSLRKLRLTGNQLKSIPKRA--------FSGLEALEHLDLGDNA-IASI  431 (873)
T ss_pred             EEEecchh-hhccchhhhheeecCceeeecchhh--------hccCcccceecCCCCc-ceee
Confidence            65333221 1234788888888888877775432        5677888888888777 5445

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=8.5e-26  Score=218.17  Aligned_cols=320  Identities=19%  Similarity=0.282  Sum_probs=249.7

Q ss_pred             cccCCCcEEEecCCCCccCCCC-CCCCCccEEEeeecCCCC-ccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEV-VESPQLKLLFICADQESS-SLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL  147 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  147 (505)
                      ..+++++||++.+|++.++... ..++.||++.+  ..++. ...+|.++| ++.-|++||++.|++++.|..+.+.+++
T Consensus        52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~--R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~  128 (1255)
T KOG0444|consen   52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV--RDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS  128 (1255)
T ss_pred             HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh--hccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence            5688999999999999777654 49999999999  44443 456899987 7999999999999999999999999999


Q ss_pred             CeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920          148 RTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN  225 (505)
Q Consensus       148 ~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  225 (505)
                      -.|+|++|.|.. | +.+-++.-|-+||+++|++..+|+.+..+..|++|.+++|. +..+.-..+..+++|++|.++++
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccc
Confidence            999999999999 6 55668999999999999999999999999999999999954 33333222566778899999977


Q ss_pred             CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhH
Q 037920          226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGL  304 (505)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~  304 (505)
                      ..+      ...+|.++..+.+|+.++++.|.+..+|.-.. +.+|+.|+++.+.                  +.....-
T Consensus       208 qRT------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~------------------iteL~~~  263 (1255)
T KOG0444|consen  208 QRT------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK------------------ITELNMT  263 (1255)
T ss_pred             cch------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc------------------eeeeecc
Confidence            654      45678899999999999999999999998776 8899998886432                  1111111


Q ss_pred             HHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccc
Q 037920          305 IVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVT  384 (505)
Q Consensus       305 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~  384 (505)
                      ...-.+|+.|+++.|   .+..+|..+  ..+++|+.|.+.+|. +                       .+..+....+.
T Consensus       264 ~~~W~~lEtLNlSrN---QLt~LP~av--cKL~kL~kLy~n~Nk-L-----------------------~FeGiPSGIGK  314 (1255)
T KOG0444|consen  264 EGEWENLETLNLSRN---QLTVLPDAV--CKLTKLTKLYANNNK-L-----------------------TFEGIPSGIGK  314 (1255)
T ss_pred             HHHHhhhhhhccccc---hhccchHHH--hhhHHHHHHHhccCc-c-----------------------cccCCccchhh
Confidence            122468899999997   788899988  779999999988876 1                       11223333356


Q ss_pred             ccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccc
Q 037920          385 LPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKL  464 (505)
Q Consensus       385 ~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  464 (505)
                      +..|+.+...+|+++-+|.+         +..++.|+.|.+..+..++ +  ++++       ..+|.|+.|++++.|+|
T Consensus       315 L~~Levf~aanN~LElVPEg---------lcRC~kL~kL~L~~NrLiT-L--PeaI-------HlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  315 LIQLEVFHAANNKLELVPEG---------LCRCVKLQKLKLDHNRLIT-L--PEAI-------HLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhhHHHHhhccccccCchh---------hhhhHHHHHhcccccceee-c--hhhh-------hhcCCcceeeccCCcCc
Confidence            77788888888877777665         6677888888887776444 3  4433       34588888888888887


Q ss_pred             c
Q 037920          465 R  465 (505)
Q Consensus       465 ~  465 (505)
                      .
T Consensus       376 V  376 (1255)
T KOG0444|consen  376 V  376 (1255)
T ss_pred             c
Confidence            5

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=6.8e-24  Score=203.64  Aligned_cols=365  Identities=17%  Similarity=0.193  Sum_probs=242.0

Q ss_pred             ccCCCcEEEecCCCCccCCC----CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920           71 AIKLYTSIVLHDIRTNLLPE----VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN  146 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~  146 (505)
                      ..-..+.++.+++.+..+..    ..-.+..++|++   .++.+..+...+|.++++|+.+++.+|.++.+|.......|
T Consensus        50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldl---snNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh  126 (873)
T KOG4194|consen   50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDL---SNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH  126 (873)
T ss_pred             CCCCceeeecCccccccccccccCCcCccceeeeec---cccccccCcHHHHhcCCcceeeeeccchhhhcccccccccc
Confidence            34456778888888766522    124567788999   88888888888889999999999999999999998888889


Q ss_pred             CCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920          147 LRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG  223 (505)
Q Consensus       147 L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  223 (505)
                      |+.|+|.+|.|.+  -+.+.-++.|+.||++.|.|+.+|. .+.+-.++++|++++ +.++.+..+.+..+.+|-+|.++
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecc
Confidence            9999999999998  4888899999999999999998863 455668899999999 67777776668889999999999


Q ss_pred             CCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC--CCCCCcEEEEEEcceee--cccccc----e-EEecC
Q 037920          224 YNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL--FFPKLQRYKIHIGGYYY--AGVWRR----E-LKICP  294 (505)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~~~~~~~~~--~~~~~~----~-l~l~~  294 (505)
                      .|.++.++.       ..|+++++|+.|++..|.+.......  ++++|+.|.+..++..-  +|.+..    . +.+..
T Consensus       206 rNrittLp~-------r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  206 RNRITTLPQ-------RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET  278 (873)
T ss_pred             cCcccccCH-------HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence            999977664       67888999999999999886442222  27888887775442110  111110    0 11111


Q ss_pred             CCCccch-hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhc
Q 037920          295 DSKIRLK-DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKV  373 (505)
Q Consensus       295 ~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~  373 (505)
                      +...... .|+.+ ++.|++|+++.|  .....-++..  ...++|++|+++.|.                     +...
T Consensus       279 N~l~~vn~g~lfg-Lt~L~~L~lS~N--aI~rih~d~W--sftqkL~~LdLs~N~---------------------i~~l  332 (873)
T KOG4194|consen  279 NRLQAVNEGWLFG-LTSLEQLDLSYN--AIQRIHIDSW--SFTQKLKELDLSSNR---------------------ITRL  332 (873)
T ss_pred             chhhhhhcccccc-cchhhhhccchh--hhheeecchh--hhcccceeEeccccc---------------------cccC
Confidence            1111111 11222 344444444444  1111111111  223444455444443                     2211


Q ss_pred             cccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccccccccccccc
Q 037920          374 NVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQL  453 (505)
Q Consensus       374 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L  453 (505)
                      ...    ....+..|+.|.++.|++..+-.+.        +..+.+|++|+++.+. +.-.+ .++.    .....+|+|
T Consensus       333 ~~~----sf~~L~~Le~LnLs~Nsi~~l~e~a--------f~~lssL~~LdLr~N~-ls~~I-EDaa----~~f~gl~~L  394 (873)
T KOG4194|consen  333 DEG----SFRVLSQLEELNLSHNSIDHLAEGA--------FVGLSSLHKLDLRSNE-LSWCI-EDAA----VAFNGLPSL  394 (873)
T ss_pred             Chh----HHHHHHHhhhhcccccchHHHHhhH--------HHHhhhhhhhcCcCCe-EEEEE-ecch----hhhccchhh
Confidence            111    1124667777777777666653332        5667888888888776 33221 2211    113457899


Q ss_pred             ccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920          454 QYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR  494 (505)
Q Consensus       454 ~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~  494 (505)
                      +.|.+.+.. +++++..  ++..+++|+.|++.+- .+.+|
T Consensus       395 rkL~l~gNq-lk~I~kr--Afsgl~~LE~LdL~~N-aiaSI  431 (873)
T KOG4194|consen  395 RKLRLTGNQ-LKSIPKR--AFSGLEALEHLDLGDN-AIASI  431 (873)
T ss_pred             hheeecCce-eeecchh--hhccCcccceecCCCC-cceee
Confidence            999998876 7777653  4667899999999886 34444

>PLN03210 Resistant to P

Probab=99.87  E-value=2.2e-21  Score=216.33  Aligned_cols=334  Identities=19%  Similarity=0.264  Sum_probs=245.6

Q ss_pred             cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCc-CccCcccccCCCCCCee
Q 037920           72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN-LMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L  150 (505)
                      +.++|.|.+.++.+..+|......+|+.|++   .++.+..++..+ ..+++|+.|+++++. +..+| .++.+++|++|
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L---~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L  662 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQM---QGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL  662 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcCCccCCcEEEC---cCcccccccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence            4679999999999999999889999999999   556677777765 789999999999876 55576 48899999999


Q ss_pred             EeeccC-CCC-cccccCCCCCcEEEccCC-CCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          151 SLDNCK-LLD-ITVVRDLKKLEILCLRGS-NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       151 ~L~~~~-l~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      ++.+|. +.. |..++++++|+.|++++| .++.+|..+ ++++|+.|++++|..+..+|..    .++|++|++++|.+
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i  737 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAI  737 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcc
Confidence            999988 555 889999999999999997 688898766 7999999999999888877752    46899999999886


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCC-------CCC--CCCCCcEEEEEEcceeecccccceEEecCCCCc
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLP-------RGL--FFPKLQRYKIHIGGYYYAGVWRRELKICPDSKI  298 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-------~~~--~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~  298 (505)
                      ..+        |..+ .+++|+.|.+..+....+.       ...  .+++|+.|++..+.                ...
T Consensus       738 ~~l--------P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~----------------~l~  792 (1153)
T PLN03210        738 EEF--------PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP----------------SLV  792 (1153)
T ss_pred             ccc--------cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC----------------Ccc
Confidence            443        3333 5778888887754322221       111  14677777764221                112


Q ss_pred             cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccc
Q 037920          299 RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNAL  378 (505)
Q Consensus       299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~  378 (505)
                      ..+.++.. +++|+.|++.+|  ..+..+|..+   .+++|+.|++++|..+.                         .+
T Consensus       793 ~lP~si~~-L~~L~~L~Ls~C--~~L~~LP~~~---~L~sL~~L~Ls~c~~L~-------------------------~~  841 (1153)
T PLN03210        793 ELPSSIQN-LHKLEHLEIENC--INLETLPTGI---NLESLESLDLSGCSRLR-------------------------TF  841 (1153)
T ss_pred             ccChhhhC-CCCCCEEECCCC--CCcCeeCCCC---CccccCEEECCCCCccc-------------------------cc
Confidence            23444443 899999999999  7788888655   58999999999987321                         00


Q ss_pred             ccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccc
Q 037920          379 FVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKM  458 (505)
Q Consensus       379 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l  458 (505)
                       +  ...++|+.|+++++.++.++..         +..+++|++|++.+|+.++.+.  ..       ...+++|+.+++
T Consensus       842 -p--~~~~nL~~L~Ls~n~i~~iP~s---------i~~l~~L~~L~L~~C~~L~~l~--~~-------~~~L~~L~~L~l  900 (1153)
T PLN03210        842 -P--DISTNISDLNLSRTGIEEVPWW---------IEKFSNLSFLDMNGCNNLQRVS--LN-------ISKLKHLETVDF  900 (1153)
T ss_pred             -c--ccccccCEeECCCCCCccChHH---------HhcCCCCCEEECCCCCCcCccC--cc-------cccccCCCeeec
Confidence             0  1246788888888888777543         6788899999999998888773  22       234588888888


Q ss_pred             cCccccccccc--CCc--------ccccCCCccceecccCccce
Q 037920          459 DDLEKLRNFCT--GDV--------DILEFPSLKELIINRCPEFL  492 (505)
Q Consensus       459 ~~~~~L~~~~~--~~~--------~~~~~~~L~~L~i~~C~~L~  492 (505)
                      .+|++|..+..  .|.        ....+|+...+...+|.+|.
T Consensus       901 ~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        901 SDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             CCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            88888865432  010        01234555666777887765

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=1.5e-24  Score=199.54  Aligned_cols=379  Identities=21%  Similarity=0.249  Sum_probs=250.3

Q ss_pred             CCcEEEecCCCCccCCC-CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920           74 LYTSIVLHDIRTNLLPE-VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL  152 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L  152 (505)
                      .+..+.+++|.+..+.. ...+..+.+|.+   +.+.....|+++ +.+..++.++.++|.+.++|++++.+..|+.|+.
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~---~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNV---HDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEe---ccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence            45667788888765543 337778888888   666667777775 6788888888888888888888888888888888


Q ss_pred             eccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920          153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE  231 (505)
Q Consensus       153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  231 (505)
                      ++|.+.. +++++.+-.|..++..+|+++++|++++++.+|..+++.+ +.+...|.+. -.++.|++++...|.+    
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~-i~m~~L~~ld~~~N~L----  195 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENH-IAMKRLKHLDCNSNLL----  195 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHH-HHHHHHHhcccchhhh----
Confidence            8888887 7888888888888888888888888888888888888888 6677777773 4488888888776654    


Q ss_pred             hhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecc----cccce---EEecCCCCccchhhH
Q 037920          232 VEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAG----VWRRE---LKICPDSKIRLKDGL  304 (505)
Q Consensus       232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~----~~~~~---l~l~~~~~~~~~~~~  304 (505)
                          +.+|..++.|.+|..|++..|++..+|+.-++..|++|.+..+....-.    ....+   +.+..+.-.+.+.++
T Consensus       196 ----~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~  271 (565)
T KOG0472|consen  196 ----ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI  271 (565)
T ss_pred             ----hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH
Confidence                5677788888888888888888888884444777777666433211100    00001   333333334445444


Q ss_pred             HHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC----------CCcccccccc---------------
Q 037920          305 IVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP----------NPAESKRREE---------------  359 (505)
Q Consensus       305 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~----------~~~~~l~~L~---------------  359 (505)
                      .- +.+|+.|++++|   .++.+|..+  +++ .|++|.+.+|+-          -+.+-++.|+               
T Consensus       272 cl-LrsL~rLDlSNN---~is~Lp~sL--gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~  344 (565)
T KOG0472|consen  272 CL-LRSLERLDLSNN---DISSLPYSL--GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT  344 (565)
T ss_pred             HH-hhhhhhhcccCC---ccccCCccc--ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence            43 567777777776   566677766  556 777777777760          0000111110               


Q ss_pred             ---------------------------------------------chhcchhhhhhhhc------------------ccc
Q 037920          360 ---------------------------------------------STDVMQSHEIILKV------------------NVN  376 (505)
Q Consensus       360 ---------------------------------------------l~~l~~~~~~~~~~------------------~~~  376 (505)
                                                                   ++.+.++.|.+...                  ...
T Consensus       345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence                                                         12222222221110                  001


Q ss_pred             cccc-ccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccc------------
Q 037920          377 ALFV-EKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEER------------  443 (505)
Q Consensus       377 ~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~------------  443 (505)
                      +|++ ....+++|..|++++|-+.++|..         .+.+-.|+.|+++.+. .+.+  +.-.+..            
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e---------~~~lv~Lq~LnlS~Nr-Fr~l--P~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLNDLPEE---------MGSLVRLQTLNLSFNR-FRML--PECLYELQTLETLLASNNQ  492 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhhhcchh---------hhhhhhhheecccccc-cccc--hHHHhhHHHHHHHHhcccc
Confidence            1111 113577788888888867676654         6667778888888763 3333  2211111            


Q ss_pred             -c----cccccccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920          444 -K----NSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       444 -~----~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                       .    ..+..+.+|.+|++.+.. ++.++.   .++.+.+|+.|++.|-|
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp---~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNND-LQQIPP---ILGNMTNLRHLELDGNP  539 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCc-hhhCCh---hhccccceeEEEecCCc
Confidence             0    235678888999988776 677766   58999999999999975

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=3.1e-22  Score=184.36  Aligned_cols=179  Identities=22%  Similarity=0.324  Sum_probs=91.4

Q ss_pred             cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920           72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  150 (505)
                      ...+++++++.|.+.++++.. .+..+..++.   .++.+..+|+++ ..+.+|..+++.+|.++.+|+..-+++.|++|
T Consensus       113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~---~~N~i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l  188 (565)
T KOG0472|consen  113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDA---TNNQISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHL  188 (565)
T ss_pred             hhhhhhhhccccceeecCchHHHHhhhhhhhc---cccccccCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence            444555666666655544332 5555555555   444455555554 34555555555555555555444445555555


Q ss_pred             EeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          151 SLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       151 ~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      +...|-++. |+.++.+.+|..|++..|++..+| .|..+..|.++++.. +.++.+|.+....++++.+|++..|.+  
T Consensus       189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNkl--  264 (565)
T KOG0472|consen  189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKL--  264 (565)
T ss_pred             ccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccccc--
Confidence            555555555 555555555555555555555554 444445555555444 444444444333455555555554443  


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG  264 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  264 (505)
                            ...|.+++.+++|..||+++|.++.+|..
T Consensus       265 ------ke~Pde~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  265 ------KEVPDEICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             ------ccCchHHHHhhhhhhhcccCCccccCCcc
Confidence                  22334444444455555554444444444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.75  E-value=8.5e-20  Score=184.63  Aligned_cols=113  Identities=17%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             chhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccc
Q 037920          360 STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVEN  439 (505)
Q Consensus       360 l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~  439 (505)
                      +..+++..|.+.+.    .++....|++||.|++++|+|..++..      |  +..++.|++|+++++. ++.+  +..
T Consensus       361 Lq~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~~fpas------~--~~kle~LeeL~LSGNk-L~~L--p~t  425 (1081)
T KOG0618|consen  361 LQELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLNSFPAS------K--LRKLEELEELNLSGNK-LTTL--PDT  425 (1081)
T ss_pred             HHHHHHhcCccccc----chhhhccccceeeeeecccccccCCHH------H--HhchHHhHHHhcccch-hhhh--hHH
Confidence            34444444444442    344456799999999999999888653      2  7889999999999987 7766  332


Q ss_pred             cccc---------------ccccccccccccccccCcccccccccCCcccccCCCccceecccCcc
Q 037920          440 QEER---------------KNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPE  490 (505)
Q Consensus       440 ~~~~---------------~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~  490 (505)
                      +...               .......|.|+.++++... |..+-. +. ....|.|+.|+++|-++
T Consensus       426 va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l-~~-~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTL-PE-ALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch-hhhhhh-hh-hCCCcccceeeccCCcc
Confidence            2211               0123345666666665433 433221 21 12238888888888664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.75  E-value=3e-20  Score=187.82  Aligned_cols=227  Identities=20%  Similarity=0.238  Sum_probs=130.3

Q ss_pred             CCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhh---------------hccccccccCCCCcCEEEeec
Q 037920          191 RLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEM---------------EGVKNASLHELKHLTSLELHI  255 (505)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~~~~l~~l~~L~~L~l~~  255 (505)
                      +|++++++. +.+..+|. .++.+.+|+.++...|.++..+..+               ...+|.....++.|++|++..
T Consensus       242 nl~~~dis~-n~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  242 NLQYLDISH-NNLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cceeeecch-hhhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            455555555 45556663 3667777777777666654333211               124555666677788888888


Q ss_pred             ccCCCCCCCCC---CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920          256 KDVNTLPRGLF---FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA  332 (505)
Q Consensus       256 ~~~~~l~~~~~---~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  332 (505)
                      |.+..+|....   ...+..|..+.....                 ..+..-...++.|+.|.+.+|  ...+..-+.+ 
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-----------------~lp~~~e~~~~~Lq~LylanN--~Ltd~c~p~l-  379 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLS-----------------TLPSYEENNHAALQELYLANN--HLTDSCFPVL-  379 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhcccc-----------------ccccccchhhHHHHHHHHhcC--cccccchhhh-
Confidence            87777776432   111222222211100                 011111123567888888887  5555555555 


Q ss_pred             ccCCCCccEEEEeCCC--CCCcccccccc-chhcchhhhhhhhccccccccccccccccccccccccccccccccceeec
Q 037920          333 KVGPSQLKHLHIWNHP--PNPAESKRREE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVM  409 (505)
Q Consensus       333 ~~~l~~L~~L~l~~~~--~~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~  409 (505)
                       .++.+|+.|++++|.  ..+...+.+|+ ++++.+++|.+...+     .....++.|++|...+|.+..+|.      
T Consensus       380 -~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-----~tva~~~~L~tL~ahsN~l~~fPe------  447 (1081)
T KOG0618|consen  380 -VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-----DTVANLGRLHTLRAHSNQLLSFPE------  447 (1081)
T ss_pred             -ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-----HHHHhhhhhHHHhhcCCceeechh------
Confidence             678888888888884  34445555554 445555555544321     111245566666666665555543      


Q ss_pred             cCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccc
Q 037920          410 SCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKL  464 (505)
Q Consensus       410 ~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  464 (505)
                          +..+|.|+.++++.+. ++.+..+...        .-|+|+.|++++...+
T Consensus       448 ----~~~l~qL~~lDlS~N~-L~~~~l~~~~--------p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  448 ----LAQLPQLKVLDLSCNN-LSEVTLPEAL--------PSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ----hhhcCcceEEecccch-hhhhhhhhhC--------CCcccceeeccCCccc
Confidence                7778889999987654 7766544322        1278999999888853

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.66  E-value=1.8e-15  Score=157.69  Aligned_cols=256  Identities=18%  Similarity=0.193  Sum_probs=185.3

Q ss_pred             CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920           73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL  152 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L  152 (505)
                      .+-..|+++.+.+.++|.... ++|+.|.+   ..+.+..+|.    .+++|++|++++|.++.+|..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L---~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP-AHITTLVI---PDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh-cCCCEEEc---cCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence            346689999999998887543 58999999   5666777775    368999999999999998753   468999999


Q ss_pred             eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920          153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                      .+|.+..++.  ...+|+.|++++|+++.+|..   +++|+.|++++ +.+..+|..    ..+|+.|++++|.+..+  
T Consensus       270 s~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~L--  337 (788)
T PRK15387        270 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTSL--  337 (788)
T ss_pred             cCCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccccc--
Confidence            9999887322  236788999999999988853   47899999998 566666642    24578888998887432  


Q ss_pred             hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920          233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE  312 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~  312 (505)
                            |.   -..+|+.|++++|.+..+|..  ..+|+.|.+..+.                  +.   .+.....+|+
T Consensus       338 ------P~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~------------------L~---~LP~l~~~L~  385 (788)
T PRK15387        338 ------PT---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR------------------LT---SLPALPSGLK  385 (788)
T ss_pred             ------cc---cccccceEecCCCccCCCCCC--Ccccceehhhccc------------------cc---cCcccccccc
Confidence                  22   114799999999999988865  5677777654221                  11   0112245789


Q ss_pred             EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccc
Q 037920          313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLE  392 (505)
Q Consensus       313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (505)
                      .|++++|   .+..+|..     .++|+.|++++|.-..      +                     +  ..+.+|+.|+
T Consensus       386 ~LdLs~N---~Lt~LP~l-----~s~L~~LdLS~N~Lss------I---------------------P--~l~~~L~~L~  428 (788)
T PRK15387        386 ELIVSGN---RLTSLPVL-----PSELKELMVSGNRLTS------L---------------------P--MLPSGLLSLS  428 (788)
T ss_pred             eEEecCC---cccCCCCc-----ccCCCEEEccCCcCCC------C---------------------C--cchhhhhhhh
Confidence            9999987   44455532     3678999999986111      0                     0  1245688899


Q ss_pred             ccccccccccccceeeccCccccccccccEEEEcccc
Q 037920          393 LDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       393 l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~  429 (505)
                      +++|+++.++..         +..+++|+.|++++++
T Consensus       429 Ls~NqLt~LP~s---------l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        429 VYRNQLTRLPES---------LIHLSSETTVNLEGNP  456 (788)
T ss_pred             hccCcccccChH---------HhhccCCCeEECCCCC
Confidence            999988877543         6778899999999887

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3.1e-18  Score=140.28  Aligned_cols=166  Identities=24%  Similarity=0.373  Sum_probs=131.5

Q ss_pred             ccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-ccccc
Q 037920           86 NLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVR  164 (505)
Q Consensus        86 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~  164 (505)
                      ..++..+.+.+...|.+   +.+.+..+|+.+ ..+.+|++|++++|+++++|.+++.++.|+.|++..|.+.. |.++|
T Consensus        24 ~~~~gLf~~s~ITrLtL---SHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTL---SHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             hhcccccchhhhhhhhc---ccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            44555556666666666   445555566665 67888888888888888888888888888888888888777 88888


Q ss_pred             CCCCCcEEEccCCCCc--ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccc
Q 037920          165 DLKKLEILCLRGSNIK--MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL  242 (505)
Q Consensus       165 ~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  242 (505)
                      .++-|+.||+++|++.  .+|..+..+..|+.|+++. +..+.+|.+ ++++++||.|.+..|.+.        .+|.++
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpkei  169 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEI  169 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcHHH
Confidence            8888888888888775  6788888888888888888 677778887 788888888888888763        456778


Q ss_pred             cCCCCcCEEEeecccCCCCCCCC
Q 037920          243 HELKHLTSLELHIKDVNTLPRGL  265 (505)
Q Consensus       243 ~~l~~L~~L~l~~~~~~~l~~~~  265 (505)
                      +.+..|+.|++.+|++..+|.++
T Consensus       170 g~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  170 GDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHHHhcccceeeecChhh
Confidence            88888888888888888888774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=3.9e-15  Score=155.28  Aligned_cols=148  Identities=24%  Similarity=0.246  Sum_probs=75.7

Q ss_pred             ccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccC
Q 037920           97 LKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRG  176 (505)
Q Consensus        97 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~  176 (505)
                      -..|++   +...+..+|..+.   .+|+.|++.+|.++.+|..   +++|++|++++|.++.++.  ..++|+.|++++
T Consensus       203 ~~~LdL---s~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNV---GESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFS  271 (788)
T ss_pred             CcEEEc---CCCCCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccC
Confidence            345555   3334445555442   3566666666666665542   4566666666666655211  134566666666


Q ss_pred             CCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecc
Q 037920          177 SNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIK  256 (505)
Q Consensus       177 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  256 (505)
                      |.++.+|..   .++|+.|++++ +.+..+|.    .+++|+.|++++|.+...        |..   ..+|+.|++++|
T Consensus       272 N~L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~----~p~~L~~LdLS~N~L~~L--------p~l---p~~L~~L~Ls~N  332 (788)
T PRK15387        272 NPLTHLPAL---PSGLCKLWIFG-NQLTSLPV----LPPGLQELSVSDNQLASL--------PAL---PSELCKLWAYNN  332 (788)
T ss_pred             Cchhhhhhc---hhhcCEEECcC-Cccccccc----cccccceeECCCCccccC--------CCC---cccccccccccC
Confidence            666555532   24455666665 34444443    134566666666655321        111   123555566666


Q ss_pred             cCCCCCCCCCCCCCcEEEEE
Q 037920          257 DVNTLPRGLFFPKLQRYKIH  276 (505)
Q Consensus       257 ~~~~l~~~~~~~~L~~L~~~  276 (505)
                      .+..+|..  ..+|+.|+++
T Consensus       333 ~L~~LP~l--p~~Lq~LdLS  350 (788)
T PRK15387        333 QLTSLPTL--PSGLQELSVS  350 (788)
T ss_pred             cccccccc--ccccceEecC
Confidence            66555542  3445555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.62  E-value=2.1e-15  Score=158.24  Aligned_cols=247  Identities=19%  Similarity=0.274  Sum_probs=130.0

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEee
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD  153 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~  153 (505)
                      +...++++++++..+|... .++++.|++   .++.+..+|..++   .+|+.|++++|.++.+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~L---s~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLIL---DNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEe---cCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            3455666666665555422 235666666   4444455555432   356666666666665554432  356666666


Q ss_pred             ccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920          154 NCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       154 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                      +|.+.. |..+.  .+|+.|++++|+++.+|..+.  ++|+.|++++ +.+..+|.. +  .++|+.|++++|.+..+  
T Consensus       250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L--  319 (754)
T PRK15370        250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-L--PSGITHLNVQSNSLTAL--  319 (754)
T ss_pred             CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-c--hhhHHHHHhcCCccccC--
Confidence            665555 33332  355666666555555554332  3566666655 334444432 1  13455555555554321  


Q ss_pred             hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920          233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE  312 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~  312 (505)
                            |..+  .++|+.|++++|.+..+|..+                                          +++|+
T Consensus       320 ------P~~l--~~sL~~L~Ls~N~Lt~LP~~l------------------------------------------~~sL~  349 (754)
T PRK15370        320 ------PETL--PPGLKTLEAGENALTSLPASL------------------------------------------PPELQ  349 (754)
T ss_pred             ------Cccc--cccceeccccCCccccCChhh------------------------------------------cCccc
Confidence                  1111  134555555555544444321                                          35677


Q ss_pred             EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccc
Q 037920          313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLE  392 (505)
Q Consensus       313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (505)
                      .|++++|   .+..+|..+    .++|+.|++++|.-.      .+.                .      ...++|+.|+
T Consensus       350 ~L~Ls~N---~L~~LP~~l----p~~L~~LdLs~N~Lt------~LP----------------~------~l~~sL~~Ld  394 (754)
T PRK15370        350 VLDVSKN---QITVLPETL----PPTITTLDVSRNALT------NLP----------------E------NLPAALQIMQ  394 (754)
T ss_pred             EEECCCC---CCCcCChhh----cCCcCEEECCCCcCC------CCC----------------H------hHHHHHHHHh
Confidence            7777776   344556544    357888888877511      110                0      0123577788


Q ss_pred             ccccccccccccceeeccCccccccccccEEEEcccc
Q 037920          393 LDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       393 l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~  429 (505)
                      +++|++..++..   +..|  ...+|++..|.+.+++
T Consensus       395 Ls~N~L~~LP~s---l~~~--~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        395 ASRNNLVRLPES---LPHF--RGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hccCCcccCchh---HHHH--hhcCCCccEEEeeCCC
Confidence            888777666432   1222  3445777788887776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=7.9e-18  Score=137.90  Aligned_cols=164  Identities=23%  Similarity=0.379  Sum_probs=148.5

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS  140 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  140 (505)
                      .+.++++.-.+++++++.+++|++..+|... .+.+|++|++   .++-+..+|.++ +.+++|+.|++.-|.+..+|..
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~---~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprg   97 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNL---SNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRG   97 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhc---ccchhhhcChhh-hhchhhhheecchhhhhcCccc
Confidence            4556677778899999999999998887665 9999999999   888889999886 8899999999999999999999


Q ss_pred             ccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc
Q 037920          141 LGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHL  217 (505)
Q Consensus       141 l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  217 (505)
                      |+.++.|+.|++.+|.+.+   |..+.-+..|+.|+++.|.++.+|+.++++++|+.|.+.. +.+-.+|.+ ++.++.|
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~l  175 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRL  175 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHH
Confidence            9999999999999999877   7888889999999999999999999999999999999999 667789998 8999999


Q ss_pred             cEEEeeCCCCCCch
Q 037920          218 EELYIGYNSFGKWE  231 (505)
Q Consensus       218 ~~L~l~~~~~~~~~  231 (505)
                      ++|.+.+|+++..+
T Consensus       176 relhiqgnrl~vlp  189 (264)
T KOG0617|consen  176 RELHIQGNRLTVLP  189 (264)
T ss_pred             HHHhcccceeeecC
Confidence            99999999875543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=1.4e-14  Score=151.95  Aligned_cols=234  Identities=19%  Similarity=0.287  Sum_probs=170.2

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG  142 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~  142 (505)
                      +..++. ..++.++.|++++|.+..+|... ..+|++|++   .++.+..+|..+   ..+|+.|++++|.++.+|..+.
T Consensus       190 LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~L---s~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        190 LTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYA---NSNQLTSIPATL---PDTIQEMELSINRITELPERLP  261 (754)
T ss_pred             cCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEEC---CCCccccCChhh---hccccEEECcCCccCcCChhHh
Confidence            344443 24678999999999999988654 369999999   566677888765   3579999999999999988764


Q ss_pred             CCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEE
Q 037920          143 LLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY  221 (505)
Q Consensus       143 ~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  221 (505)
                        .+|++|++++|.+.. |..+.  .+|+.|++++|+++.+|..+.  ++|+.|++++ +.+..+|..   -.++|+.|+
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~---l~~sL~~L~  331 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET---LPPGLKTLE  331 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc---ccccceecc
Confidence              589999999999988 66554  589999999999999886543  5799999998 566677754   236899999


Q ss_pred             eeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920          222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK  301 (505)
Q Consensus       222 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~  301 (505)
                      +++|.++.+        |..+.  ++|+.|++++|.+..+|..+ .++|+.|++..+.                 -...+
T Consensus       332 Ls~N~Lt~L--------P~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~-----------------Lt~LP  383 (754)
T PRK15370        332 AGENALTSL--------PASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNA-----------------LTNLP  383 (754)
T ss_pred             ccCCccccC--------Chhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCc-----------------CCCCC
Confidence            999987543        33333  68999999999998888754 4677777764321                 11122


Q ss_pred             hhHHHHhcceeEEeecCCCCCCcchhhhhhh--ccCCCCccEEEEeCCC
Q 037920          302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELA--KVGPSQLKHLHIWNHP  348 (505)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~--~~~l~~L~~L~l~~~~  348 (505)
                      ..+   ...|+.|++++|   .+..+|..+.  ...++++..+.+.+|+
T Consensus       384 ~~l---~~sL~~LdLs~N---~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        384 ENL---PAALQIMQASRN---NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HhH---HHHHHHHhhccC---CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            222   235777888887   3444444331  1345777888887776

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.42  E-value=1.9e-14  Score=133.09  Aligned_cols=262  Identities=19%  Similarity=0.231  Sum_probs=152.0

Q ss_pred             ccCCCCCcccccCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeC-CcCccC
Q 037920           61 EGYREWSDESAIKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN-INLMSL  137 (505)
Q Consensus        61 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l  137 (505)
                      +++++++. ..+.....+.+..|+|..+|+..  .+++||.|+|   +.+.+..|.+..|.+++.|..|-+.+ |.|+.+
T Consensus        56 ~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdL---S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   56 KGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDL---SKNNISFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             CCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecc---cccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            35666554 46677788888888888887654  7888888888   66666777777778888777766555 778887


Q ss_pred             cc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--------
Q 037920          138 PS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV--------  205 (505)
Q Consensus       138 ~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--------  205 (505)
                      |. .|..|..|+-|.+.-|.+.-  ...+..+++|..|.+..|.++.++. .+..+..++++++..+..+..        
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            74 56777777777777777665  3666777777777777776666654 556666666666654321100        


Q ss_pred             ----cChhhhcCCCCccEEEeeCCCCCCc------------hhhh------hc-cccccccCCCCcCEEEeecccCCCCC
Q 037920          206 ----IPANVLSNLSHLEELYIGYNSFGKW------------EVEM------EG-VKNASLHELKHLTSLELHIKDVNTLP  262 (505)
Q Consensus       206 ----~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~------~~-~~~~~l~~l~~L~~L~l~~~~~~~l~  262 (505)
                          .|.. .+.........+.+.++...            ....      .. .-...|+.+++|++|++++|+++.+.
T Consensus       212 ~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  212 DLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             HHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence                0100 11111111111110000000            0000      00 11135777888888888888887665


Q ss_pred             CCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCcc
Q 037920          263 RGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLK  340 (505)
Q Consensus       263 ~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~  340 (505)
                      ...+  ...++.|.+..+.                 ..........-+.+|+.|+|.+|  ......|-.+  ..+..|.
T Consensus       291 ~~aFe~~a~l~eL~L~~N~-----------------l~~v~~~~f~~ls~L~tL~L~~N--~it~~~~~aF--~~~~~l~  349 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRNK-----------------LEFVSSGMFQGLSGLKTLSLYDN--QITTVAPGAF--QTLFSLS  349 (498)
T ss_pred             hhhhcchhhhhhhhcCcch-----------------HHHHHHHhhhccccceeeeecCC--eeEEEecccc--cccceee
Confidence            5543  6666666654321                 11122233334667777777776  3323333333  6667777


Q ss_pred             EEEEeCCC
Q 037920          341 HLHIWNHP  348 (505)
Q Consensus       341 ~L~l~~~~  348 (505)
                      +|.+-.|+
T Consensus       350 ~l~l~~Np  357 (498)
T KOG4237|consen  350 TLNLLSNP  357 (498)
T ss_pred             eeehccCc
Confidence            77776665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.41  E-value=9.4e-14  Score=134.79  Aligned_cols=139  Identities=20%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             HHhCCCCccEEEEeCCcCcc-----CcccccCCCCCCeeEeeccCCCC--------cccccCCCCCcEEEccCCCCcc-c
Q 037920          117 FFERMMQVRVINLTNINLMS-----LPSSLGLLSNLRTLSLDNCKLLD--------ITVVRDLKKLEILCLRGSNIKM-L  182 (505)
Q Consensus       117 ~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--------~~~i~~l~~L~~L~l~~~~l~~-l  182 (505)
                      +|..+.+|+.|+++++.++.     ++..+...+.|++|+++++.+..        +..+..+++|+.|++++|.+.. .
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            34566668888888777642     45556667777888877776551        2455667788888888877652 3


Q ss_pred             chhhhCCCC---CCEEeeeCCCCCC----ccChhhhcCC-CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920          183 PIEVSELAR---LRLLGLRDCRELE----VIPANVLSNL-SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH  254 (505)
Q Consensus       183 p~~i~~l~~---L~~L~l~~~~~~~----~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  254 (505)
                      +..+..+..   |++|++++|....    .+... +..+ ++|++|++++|.++...   ...+...+..+++|++|+++
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~L~~L~l~  173 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEALAKALRANRDLKELNLA  173 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHHHHHHHHhCCCcCEEECc
Confidence            344444444   8888887754321    11122 4555 77888888888775322   12334456666778888877


Q ss_pred             cccCC
Q 037920          255 IKDVN  259 (505)
Q Consensus       255 ~~~~~  259 (505)
                      +|.+.
T Consensus       174 ~n~l~  178 (319)
T cd00116         174 NNGIG  178 (319)
T ss_pred             CCCCc
Confidence            76643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=2.1e-13  Score=132.29  Aligned_cols=81  Identities=25%  Similarity=0.264  Sum_probs=34.3

Q ss_pred             hCCCCccEEEEeCCcCcc-CcccccCCC---CCCeeEeeccCCCC------cccccCC-CCCcEEEccCCCCc-----cc
Q 037920          119 ERMMQVRVINLTNINLMS-LPSSLGLLS---NLRTLSLDNCKLLD------ITVVRDL-KKLEILCLRGSNIK-----ML  182 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~-l~~~l~~l~---~L~~L~L~~~~l~~------~~~i~~l-~~L~~L~l~~~~l~-----~l  182 (505)
                      ..+++|+.|+++++.+.. .+..+..+.   +|++|++++|.+.+      ...+..+ ++|+.|++++|.++     .+
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            344455555555554432 222222222   25555555554442      1223333 45555555555444     12


Q ss_pred             chhhhCCCCCCEEeeeC
Q 037920          183 PIEVSELARLRLLGLRD  199 (505)
Q Consensus       183 p~~i~~l~~L~~L~l~~  199 (505)
                      +..+..+++|++|++++
T Consensus       158 ~~~~~~~~~L~~L~l~~  174 (319)
T cd00116         158 AKALRANRDLKELNLAN  174 (319)
T ss_pred             HHHHHhCCCcCEEECcC
Confidence            22333444455555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.33  E-value=4.5e-14  Score=130.73  Aligned_cols=142  Identities=22%  Similarity=0.338  Sum_probs=106.9

Q ss_pred             cCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCCCCeeEeec-cCCC
Q 037920           81 HDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSNLRTLSLDN-CKLL  158 (505)
Q Consensus        81 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L~~L~L~~-~~l~  158 (505)
                      ++-.+.++|... .+....+.|   +.+.+..+|+..|+.+++||.|||+.|.|.. -|+.|..+..|..|-+.+ |.|+
T Consensus        54 r~~GL~eVP~~L-P~~tveirL---dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   54 RGKGLTEVPANL-PPETVEIRL---DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             cCCCcccCcccC-CCcceEEEe---ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            334445555432 234566777   7778888888888999999999999998887 467888888888877766 6688


Q ss_pred             C-c-ccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          159 D-I-TVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       159 ~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      . + ..++.+..|+.|.+.-|++..++ ..+..+++|..|.+.. +.+..++...+..+..++.+.+..|.+
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcc
Confidence            8 5 67788888888888888887664 5678888888888888 666777776577778888887776653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.30  E-value=6.6e-12  Score=134.12  Aligned_cols=180  Identities=23%  Similarity=0.297  Sum_probs=124.3

Q ss_pred             CcccccCCCcEEEecCCC--CccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920           67 SDESAIKLYTSIVLHDIR--TNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG  142 (505)
Q Consensus        67 ~~~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~  142 (505)
                      ......+++++|-+.+|.  +..++.  ...++.|++|++  +++.....+|.++ +.+-+||+|+++++.+..+|..+.
T Consensus       539 ~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDL--s~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~  615 (889)
T KOG4658|consen  539 AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDL--SGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLG  615 (889)
T ss_pred             cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEEC--CCCCccCcCChHH-hhhhhhhcccccCCCccccchHHH
Confidence            334455689999999986  566665  338999999999  5677788899886 899999999999999999999999


Q ss_pred             CCCCCCeeEeeccCCC-Cc-ccccCCCCCcEEEccCCCCcc---cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc
Q 037920          143 LLSNLRTLSLDNCKLL-DI-TVVRDLKKLEILCLRGSNIKM---LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHL  217 (505)
Q Consensus       143 ~l~~L~~L~L~~~~l~-~~-~~i~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  217 (505)
                      ++..|.||++..+.-. .+ .....+.+|++|.+.......   .-..+.++.+|+.+....+..  .+... +..++.|
T Consensus       616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L  692 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRL  692 (889)
T ss_pred             HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHH
Confidence            9999999999988844 44 555569999999998765321   123445566666665544221  11111 3333333


Q ss_pred             cE----EEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920          218 EE----LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT  260 (505)
Q Consensus       218 ~~----L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  260 (505)
                      ..    +.+.++.        ....+..+..+++|+.|.+..+...+
T Consensus       693 ~~~~~~l~~~~~~--------~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  693 RSLLQSLSIEGCS--------KRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             HHHhHhhhhcccc--------cceeecccccccCcceEEEEcCCCch
Confidence            32    2222211        23344567778888888888777643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=4.8e-13  Score=129.47  Aligned_cols=188  Identities=24%  Similarity=0.311  Sum_probs=163.1

Q ss_pred             cccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCC
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLR  148 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~  148 (505)
                      ........++++.|++..+|... .+..|..+.+   +.+.+-.+|..+ ..+..|++++++.|++..+|..++.|+ |+
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liL---y~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lk  146 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLIL---YHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LK  146 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHHHHHHHHHH---Hhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ce
Confidence            34566778999999999998766 8888999999   666677788776 789999999999999999999998887 99


Q ss_pred             eeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          149 TLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       149 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      .|.+++|++.. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|++.. +.+..+|.+ +..++ |..|+++.|++
T Consensus       147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~Lp-Li~lDfScNki  223 (722)
T KOG0532|consen  147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSLP-LIRLDFSCNKI  223 (722)
T ss_pred             eEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCCc-eeeeecccCce
Confidence            99999999999 8999999999999999999999999999999999999999 778889988 67555 99999998876


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEE
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRY  273 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L  273 (505)
                              ..+|..|.+|+.|+.|.+.+|.+.+-|..+. ...+..+
T Consensus       224 --------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF  262 (722)
T KOG0532|consen  224 --------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIF  262 (722)
T ss_pred             --------eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeee
Confidence                    4567889999999999999999998887776 3333333

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=6.1e-11  Score=101.91  Aligned_cols=124  Identities=20%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             ccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc-cCCCCCC
Q 037920           71 AIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLR  148 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~  148 (505)
                      .+.+++.|++++|.+..+.... .+.+|++|++   +++.+..++.  +..++.|+.|++++|.++++.+.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~L---s~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDL---SNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             -------------------S--TT-TT--EEE----TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccchhhhhcCCCEEEC---CCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            3445677777777777776655 5667777777   5555556654  456777777777777777665444 3467777


Q ss_pred             eeEeeccCCCC---cccccCCCCCcEEEccCCCCcccch----hhhCCCCCCEEeeeC
Q 037920          149 TLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPI----EVSELARLRLLGLRD  199 (505)
Q Consensus       149 ~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~  199 (505)
                      +|++++|.+.+   +..+..+++|+.|++.+|.++..+.    .+..+|+|+.||-..
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            77777777655   3555666777777777766653322    345566666665443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=4.9e-11  Score=102.51  Aligned_cols=130  Identities=22%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             hCCCCccEEEEeCCcCccCccccc-CCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhh-hCCCCCCEEe
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLG-LLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLG  196 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~  196 (505)
                      .+..+++.|+++++.|+.+. .++ .+.+|+.|++++|.+..++.+..+++|++|++++|+++.+...+ ..+++|++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            34556667777777666652 344 46667777777777666666666777777777777776665444 3467777777


Q ss_pred             eeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920          197 LRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH  254 (505)
Q Consensus       197 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  254 (505)
                      +++ +.+..+.. ..+..+++|++|++.+|.+...    ...-...+..+|+|+.||-.
T Consensus        95 L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETTE
T ss_pred             CcC-CcCCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCCE
Confidence            766 33333221 1145666777777776665432    11222345566666666643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=8.8e-12  Score=120.90  Aligned_cols=186  Identities=19%  Similarity=0.303  Sum_probs=154.5

Q ss_pred             EEEecCCCCccCCCCC---CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEee
Q 037920           77 SIVLHDIRTNLLPEVV---ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD  153 (505)
Q Consensus        77 ~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~  153 (505)
                      ++.|++.++..+|...   .+..-...++   +.+....+|..+ ..+..|..+.++.|.+..+|..++++..|.+|+|+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDl---srNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADL---SRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS  129 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhc---cccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence            4666666666666433   4444455666   667777888876 78899999999999999999999999999999999


Q ss_pred             ccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920          154 NCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       154 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                      .|.++. |..++.| -|+.|-+++|+++.+|..++.+.+|.+|+.+. +.+..+|.. ++.+.+|+.|++..|.+.+   
T Consensus       130 ~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~~---  203 (722)
T KOG0532|consen  130 SNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLED---  203 (722)
T ss_pred             cchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhhh---
Confidence            999998 7888777 58999999999999999999889999999998 667788887 8999999999999888644   


Q ss_pred             hhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEc
Q 037920          233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIG  278 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~  278 (505)
                           +|.++..++ |..||+++|++..+|..+. +..|+.|.+..+
T Consensus       204 -----lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  204 -----LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             -----CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccC
Confidence                 556777554 8999999999999999876 888888887644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.02  E-value=9.1e-12  Score=116.56  Aligned_cols=286  Identities=16%  Similarity=0.159  Sum_probs=157.3

Q ss_pred             CCCeeEeeccC-CCC--c-ccccCCCCCcEEEccCC-CCcc--cchhhhCCCCCCEEeeeCCCCCCccChh-hhcCCCCc
Q 037920          146 NLRTLSLDNCK-LLD--I-TVVRDLKKLEILCLRGS-NIKM--LPIEVSELARLRLLGLRDCRELEVIPAN-VLSNLSHL  217 (505)
Q Consensus       146 ~L~~L~L~~~~-l~~--~-~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L  217 (505)
                      .|+.|.++++. ...  . ....+++++++|++.+| +++.  +-..-..+++|++|++..|..++...-. ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57777777776 332  2 34456778888888777 4442  2223346678888888877766654321 24567888


Q ss_pred             cEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC----CCCCCCcEEEEEEcceeecccccceEEec
Q 037920          218 EELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG----LFFPKLQRYKIHIGGYYYAGVWRRELKIC  293 (505)
Q Consensus       218 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~----~~~~~L~~L~~~~~~~~~~~~~~~~l~l~  293 (505)
                      ++++++||.-..     ...+..-...+++++.+...++.-..+...    .....+.++++..                
T Consensus       219 ~~lNlSwc~qi~-----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~----------------  277 (483)
T KOG4341|consen  219 KYLNLSWCPQIS-----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH----------------  277 (483)
T ss_pred             HHhhhccCchhh-----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh----------------
Confidence            888888775421     111222233444455554443321100000    0011122222110                


Q ss_pred             CCCCccc--hhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhh
Q 037920          294 PDSKIRL--KDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIIL  371 (505)
Q Consensus       294 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~  371 (505)
                       ...+.-  ...+...+..|+.|..+++  ...+..+-|--..+..+|+.+.+..|...+...|..|.            
T Consensus       278 -c~~lTD~~~~~i~~~c~~lq~l~~s~~--t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------------  342 (483)
T KOG4341|consen  278 -CNQLTDEDLWLIACGCHALQVLCYSSC--TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------------  342 (483)
T ss_pred             -hccccchHHHHHhhhhhHhhhhcccCC--CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------------
Confidence             111111  1112333678999999999  56666555554578899999999999865544444332            


Q ss_pred             hcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccc
Q 037920          372 KVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIF  450 (505)
Q Consensus       372 ~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~  450 (505)
                                 ...+.|+.+++.+| .+.+-...++       ..++|.|++|.+++|..+++-    ++..........
T Consensus       343 -----------rn~~~Le~l~~e~~~~~~d~tL~sl-------s~~C~~lr~lslshce~itD~----gi~~l~~~~c~~  400 (483)
T KOG4341|consen  343 -----------RNCPHLERLDLEECGLITDGTLASL-------SRNCPRLRVLSLSHCELITDE----GIRHLSSSSCSL  400 (483)
T ss_pred             -----------cCChhhhhhcccccceehhhhHhhh-------ccCCchhccCChhhhhhhhhh----hhhhhhhccccc
Confidence                       24667777777777 3322211111       455778888888888776633    222222233455


Q ss_pred             cccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920          451 PQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF  491 (505)
Q Consensus       451 p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L  491 (505)
                      ..|+.+.+.+||.+..-.  -+....+++|+.+++.+|...
T Consensus       401 ~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  401 EGLEVLELDNCPLITDAT--LEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             cccceeeecCCCCchHHH--HHHHhhCcccceeeeechhhh
Confidence            677777788888763321  112556777777777777443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=5.1e-11  Score=106.89  Aligned_cols=182  Identities=16%  Similarity=0.262  Sum_probs=141.4

Q ss_pred             cccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccc----cChh-------------------HHhCCCCcc
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLT----IPNK-------------------FFERMMQVR  125 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~-------------------~~~~l~~L~  125 (505)
                      ...++++.+-++.+.-..+.... .-+.|.++.+   .+..+..    +|..                   .......|+
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v---~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt  287 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICV---HNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT  287 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeee---ecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence            45677888888887765554443 5567777776   3222111    1110                   012346789


Q ss_pred             EEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCc
Q 037920          126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEV  205 (505)
Q Consensus       126 ~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~  205 (505)
                      .+|+++|.|+.+-++..-.|.+|.|++++|.+..+..+..+++|+.||+++|.++.+..+=.++-+.+.|.+.+ +.+..
T Consensus       288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~  366 (490)
T KOG1259|consen  288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIET  366 (490)
T ss_pred             hccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhh
Confidence            99999999999888888899999999999999998889999999999999999888866667888999999999 66676


Q ss_pred             cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCC
Q 037920          206 IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR  263 (505)
Q Consensus       206 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~  263 (505)
                      +..  ++++-+|..|++.+|++....      ....++++|-|+++.+.+|.+..++.
T Consensus       367 LSG--L~KLYSLvnLDl~~N~Ie~ld------eV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  367 LSG--LRKLYSLVNLDLSSNQIEELD------EVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhh--hHhhhhheeccccccchhhHH------HhcccccccHHHHHhhcCCCccccch
Confidence            665  789999999999999987543      23578999999999999998776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=9.5e-11  Score=110.44  Aligned_cols=118  Identities=18%  Similarity=0.177  Sum_probs=67.2

Q ss_pred             hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccc
Q 037920          302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVE  381 (505)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~  381 (505)
                      .++...+|+|+.|++..|........+.    .-++.|++|++++|.-+..+                        .+..
T Consensus       215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~----~i~~~L~~LdLs~N~li~~~------------------------~~~~  266 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEANEIILIKATST----KILQTLQELDLSNNNLIDFD------------------------QGYK  266 (505)
T ss_pred             HHHHHhCCcHHHhhhhcccccceecchh----hhhhHHhhccccCCcccccc------------------------cccc
Confidence            3444457777777777762122222232    23577777777777632211                        2233


Q ss_pred             cccccccccccccccccccccccceeeccCcc---ccccccccEEEEccccccccceecccccccccccccccccccccc
Q 037920          382 KVTLPKLENLELDSINVERIWQSHVAVMSCVS---NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKM  458 (505)
Q Consensus       382 ~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~---l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l  458 (505)
                      .+.||.|..|+++.+.+.++..     .+|..   ...+|+|++|.+..++ +.+|.....       ....++|+.|.+
T Consensus       267 ~~~l~~L~~Lnls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~-------l~~l~nlk~l~~  333 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENN-IRDWRSLNH-------LRTLENLKHLRI  333 (505)
T ss_pred             cccccchhhhhccccCcchhcC-----CCccchhhhcccccceeeecccCc-cccccccch-------hhccchhhhhhc
Confidence            3468888888888887776622     22322   4567888888888776 544422221       234466666664


Q ss_pred             cC
Q 037920          459 DD  460 (505)
Q Consensus       459 ~~  460 (505)
                      ..
T Consensus       334 ~~  335 (505)
T KOG3207|consen  334 TL  335 (505)
T ss_pred             cc
Confidence            33

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.3e-10  Score=106.83  Aligned_cols=157  Identities=16%  Similarity=0.187  Sum_probs=71.4

Q ss_pred             CCCCccEEEeeecCCCCccccCh-hHHhCCCCccEEEEeCCcCcc---CcccccCCCCCCeeEeeccCCCCc---ccccC
Q 037920           93 ESPQLKLLFICADQESSSLTIPN-KFFERMMQVRVINLTNINLMS---LPSSLGLLSNLRTLSLDNCKLLDI---TVVRD  165 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~L~~~~l~~~---~~i~~  165 (505)
                      ++++|+.+.+   ++.....++. .....|++++.||++.|-+..   +..-...+++|+.|+++.|.+..+   ..-..
T Consensus       119 n~kkL~~IsL---dn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  119 NLKKLREISL---DNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hHHhhhheee---cCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            5555555555   4444333332 233556666666666654443   222334556666666665554441   11124


Q ss_pred             CCCCcEEEccCCCCc--ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhcccccccc
Q 037920          166 LKKLEILCLRGSNIK--MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH  243 (505)
Q Consensus       166 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  243 (505)
                      +.+|+.|.++.|+++  .+......+|+|..|++.+|+.+...... -.-+..|++|++++|.+.+++.      ...++
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~------~~~~~  268 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ------GYKVG  268 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc------ccccc
Confidence            455555555555554  11122233455555555554321111111 1234445555555555443221      12234


Q ss_pred             CCCCcCEEEeecccCC
Q 037920          244 ELKHLTSLELHIKDVN  259 (505)
Q Consensus       244 ~l~~L~~L~l~~~~~~  259 (505)
                      .++.|+.|+++.+++.
T Consensus       269 ~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIA  284 (505)
T ss_pred             cccchhhhhccccCcc
Confidence            4555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.86  E-value=2.1e-09  Score=107.53  Aligned_cols=188  Identities=26%  Similarity=0.330  Sum_probs=145.5

Q ss_pred             EEEecCCCC-ccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCC-CccEEEEeCCcCccCcccccCCCCCCeeEeec
Q 037920           77 SIVLHDIRT-NLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMM-QVRVINLTNINLMSLPSSLGLLSNLRTLSLDN  154 (505)
Q Consensus        77 ~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~  154 (505)
                      .+....+.+ ..+......+.+..|.+   .++.+..++... ..+. +|+.|++++|.+..+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l---~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDL---DNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEec---CCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence            466666666 44444446678899998   777778887754 4453 89999999999999887889999999999999


Q ss_pred             cCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhh
Q 037920          155 CKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVE  233 (505)
Q Consensus       155 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  233 (505)
                      |.+.. +...+.+++|+.|++++++++.+|..+.....|+.+.+.++.. ...+.. +..+.++..+.+..+.+..    
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~~----  246 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLED----  246 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceeee----
Confidence            99988 5666689999999999999999988777778899999988433 334433 6788888888877766532    


Q ss_pred             hhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEc
Q 037920          234 MEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIG  278 (505)
Q Consensus       234 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~  278 (505)
                          ++..+..++.++.|++++|.+..++....+.+++.++++..
T Consensus       247 ----~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         247 ----LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ----ccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence                24667888889999999999988887444788888887643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.86  E-value=2.4e-09  Score=107.02  Aligned_cols=173  Identities=28%  Similarity=0.360  Sum_probs=92.6

Q ss_pred             CCCcEEEecCCCCccCCCCCCCC--CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920           73 KLYTSIVLHDIRTNLLPEVVESP--QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  150 (505)
                      +.++.+++.++.+..++......  +|+.|++   ..+.+..++.. ...+++|+.|++++|.+..+|...+.++.|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l---~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDL---SDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccc---cccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            34555666666665555544332  5666666   44444444322 255666666666666666655554456666666


Q ss_pred             EeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          151 SLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       151 ~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      ++++|.+.. +..+..+.+|++|.+++|.+...+..+.++.++..+.+.+ +.+..++.. ++.+++++.|++++|.+..
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceeccccccccc
Confidence            666666655 4444455556666666654444444555555555555444 333333333 4555556666666555433


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCC
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNT  260 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  260 (505)
                      ++        . +..+.+++.|+++++.+..
T Consensus       270 i~--------~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         270 IS--------S-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cc--------c-ccccCccCEEeccCccccc
Confidence            21        1 5555566666666555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=2.6e-10  Score=102.38  Aligned_cols=127  Identities=21%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             CCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCc-ccccCCCCCcEE
Q 037920           94 SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI-TVVRDLKKLEIL  172 (505)
Q Consensus        94 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~-~~i~~l~~L~~L  172 (505)
                      ...|.++++   +.+.+..+.+++ +-.+.+++|++++|.+..+-. +..+++|+.|+|++|.+... ..=.++-|+++|
T Consensus       283 Wq~LtelDL---S~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDL---SGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccc---cccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            344556666   555555555554 556666666666666665432 55666666666666666553 222355566666


Q ss_pred             EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccC--hhhhcCCCCccEEEeeCCCCC
Q 037920          173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIP--ANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      .+++|.++.+. +++++-+|..|++++ +.+..+.  .. ||++|.|+.+.+.+|.+.
T Consensus       358 ~La~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~-IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  358 KLAQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNH-IGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ehhhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcc-cccccHHHHHhhcCCCcc
Confidence            66666666553 566666666666666 3333321  12 566666666666666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.83  E-value=8.2e-10  Score=101.44  Aligned_cols=242  Identities=16%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             cccCCCcEEEecCCCCcc-----CCC-CCCCCCccEEEeeecCCCC-ccccChhH------HhCCCCccEEEEeCCcCcc
Q 037920           70 SAIKLYTSIVLHDIRTNL-----LPE-VVESPQLKLLFICADQESS-SLTIPNKF------FERMMQVRVINLTNINLMS  136 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~------~~~l~~L~~L~l~~~~~~~  136 (505)
                      .....++.+++++|.+..     +.. ..+.++|+..++.+..... ...+|+.+      +-.+++|++||||+|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            345678888888888721     211 2255677777772111111 12233221      2345677777777776532


Q ss_pred             -----CcccccCCCCCCeeEeeccCCCC-c-c-------------cccCCCCCcEEEccCCCCccc-----chhhhCCCC
Q 037920          137 -----LPSSLGLLSNLRTLSLDNCKLLD-I-T-------------VVRDLKKLEILCLRGSNIKML-----PIEVSELAR  191 (505)
Q Consensus       137 -----l~~~l~~l~~L~~L~L~~~~l~~-~-~-------------~i~~l~~L~~L~l~~~~l~~l-----p~~i~~l~~  191 (505)
                           +.+-+..+..|++|+|.+|.+.. - .             .++.-+.|+.+...+|++..-     ...+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence                 22344556667777777666554 1 1             122345556665555554422     223444455


Q ss_pred             CCEEeeeCCCCCCc---cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCC
Q 037920          192 LRLLGLRDCRELEV---IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFP  268 (505)
Q Consensus       192 L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~  268 (505)
                      |+.+.+..|..-..   .-...+..+++|++|++.+|.++....   -.+...++.+++|+.|+++.|.+..        
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---~~LakaL~s~~~L~El~l~dcll~~--------  255 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---VALAKALSSWPHLRELNLGDCLLEN--------  255 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---HHHHHHhcccchheeeccccccccc--------
Confidence            55555555321110   001113455555666655555543221   1233344555555555555444322        


Q ss_pred             CCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          269 KLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       269 ~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                                                .+...+..++....|+|+.|.+.+|.+..-.......+....|.|+.|.+++|.
T Consensus       256 --------------------------~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  256 --------------------------EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             --------------------------ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence                                      455556666666688999999998832221111222222447999999999987

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.71  E-value=3.4e-10  Score=106.23  Aligned_cols=307  Identities=16%  Similarity=0.121  Sum_probs=177.1

Q ss_pred             CccEEEEeCCcCcc---CcccccCCCCCCeeEeeccC-CCC--cccc-cCCCCCcEEEccCC-CCccc--chhhhCCCCC
Q 037920          123 QVRVINLTNINLMS---LPSSLGLLSNLRTLSLDNCK-LLD--ITVV-RDLKKLEILCLRGS-NIKML--PIEVSELARL  192 (505)
Q Consensus       123 ~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~L~~~~-l~~--~~~i-~~l~~L~~L~l~~~-~l~~l--p~~i~~l~~L  192 (505)
                      .|+.|.++++.-..   +-....+++++++|.+.+|. +++  ...+ ..+++|++|++..| .++..  ......+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46667777664221   33344567777777777777 444  2333 35677888888775 56533  2234567888


Q ss_pred             CEEeeeCCCCCCccC-hhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecc-cCCCCCCCC---CC
Q 037920          193 RLLGLRDCRELEVIP-ANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIK-DVNTLPRGL---FF  267 (505)
Q Consensus       193 ~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~---~~  267 (505)
                      ++|+++.|..+..-. ......+..++++...+|.-....     .+...-..+..+..+++..+ .+++..-+.   ..
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-----~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-----ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-----HHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            888888877655411 111345556777766665432211     11111122333445554432 233222111   14


Q ss_pred             CCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCC
Q 037920          268 PKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH  347 (505)
Q Consensus       268 ~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~  347 (505)
                      ..|+.+......               ...-....++....++|+.|.+..|  ...+.........+++.|+.+++..|
T Consensus       294 ~~lq~l~~s~~t---------------~~~d~~l~aLg~~~~~L~~l~l~~c--~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  294 HALQVLCYSSCT---------------DITDEVLWALGQHCHNLQVLELSGC--QQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hHhhhhcccCCC---------------CCchHHHHHHhcCCCceEEEecccc--chhhhhhhhhhhcCChhhhhhccccc
Confidence            455555543211               1111223445666889999999999  55544444334477899999999998


Q ss_pred             CCCCccccccccchhcchhhhhhhhcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEc
Q 037920          348 PPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIK  426 (505)
Q Consensus       348 ~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~  426 (505)
                      .-.++..|.++.                       ..+|.|++|.++.| -+++-+.-.+...    ......|+.+++.
T Consensus       357 ~~~~d~tL~sls-----------------------~~C~~lr~lslshce~itD~gi~~l~~~----~c~~~~l~~lEL~  409 (483)
T KOG4341|consen  357 GLITDGTLASLS-----------------------RNCPRLRVLSLSHCELITDEGIRHLSSS----SCSLEGLEVLELD  409 (483)
T ss_pred             ceehhhhHhhhc-----------------------cCCchhccCChhhhhhhhhhhhhhhhhc----cccccccceeeec
Confidence            744433333332                       46899999999988 5555422222222    4467789999999


Q ss_pred             cccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceeccc
Q 037920          427 NCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINR  487 (505)
Q Consensus       427 ~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~  487 (505)
                      +|+.+++-    .++    .+..+++|+.+++.+|....+=..-+ -..++|+++.....+
T Consensus       410 n~p~i~d~----~Le----~l~~c~~Leri~l~~~q~vtk~~i~~-~~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  410 NCPLITDA----TLE----HLSICRNLERIELIDCQDVTKEAISR-FATHLPNIKVHAYFA  461 (483)
T ss_pred             CCCCchHH----HHH----HHhhCcccceeeeechhhhhhhhhHH-HHhhCccceehhhcc
Confidence            99988744    222    25678999999999999884321100 144567766655443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=6.1e-09  Score=93.68  Aligned_cols=67  Identities=19%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             hhHHHHhcceeEEeecCCCCCCcc-hhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccc
Q 037920          302 DGLIVQLQGIEDLGLSKLPEQDVD-YFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFV  380 (505)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~  380 (505)
                      ..+...+++|.+|+|++|  ..++ .+...+  -.++.|++|.++.|-.+...                        .+-
T Consensus       306 ~tL~~rcp~l~~LDLSD~--v~l~~~~~~~~--~kf~~L~~lSlsRCY~i~p~------------------------~~~  357 (419)
T KOG2120|consen  306 STLVRRCPNLVHLDLSDS--VMLKNDCFQEF--FKFNYLQHLSLSRCYDIIPE------------------------TLL  357 (419)
T ss_pred             HHHHHhCCceeeeccccc--cccCchHHHHH--HhcchheeeehhhhcCCChH------------------------Hee
Confidence            445666889999999887  4433 233333  56889999999888643322                        222


Q ss_pred             cccccccccccccccc
Q 037920          381 EKVTLPKLENLELDSI  396 (505)
Q Consensus       381 ~~~~~~~L~~L~l~~~  396 (505)
                      .....|+|.+|++.+|
T Consensus       358 ~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeccCcceEEEEeccc
Confidence            3336788888888777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.49  E-value=2.9e-08  Score=91.45  Aligned_cols=183  Identities=17%  Similarity=0.160  Sum_probs=117.5

Q ss_pred             ccCCCcEEEecCCCC--ccCCCC----CCCCCccEEEeeecCCCCccccChh-------------HHhCCCCccEEEEeC
Q 037920           71 AIKLYTSIVLHDIRT--NLLPEV----VESPQLKLLFICADQESSSLTIPNK-------------FFERMMQVRVINLTN  131 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~--~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~l~~L~~L~l~~  131 (505)
                      .+++++.++|++|.+  ..++..    .++..|+.|.+   .++-++.....             ....-+.||++....
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L---~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL---NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh---hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            455788888888887  233321    26788888888   44433322111             123457788888888


Q ss_pred             CcCcc-----CcccccCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCc-----ccchhhhCCCCCCEE
Q 037920          132 INLMS-----LPSSLGLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIK-----MLPIEVSELARLRLL  195 (505)
Q Consensus       132 ~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L  195 (505)
                      |.+..     +...+...+.|+.+.+..|.|..  .    ..+..+++|+.||+..|.++     .+...+..+++|+.|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            87664     33456667888888888888665  2    56677888888888888665     334456677788888


Q ss_pred             eeeCCCCCCc----cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920          196 GLRDCRELEV----IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN  259 (505)
Q Consensus       196 ~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (505)
                      ++++|..-..    +....-...|+|+++.+.+|.++....   ..+...+...+.|+.|++++|.+.
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~---~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA---LALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH---HHHHHHHhcchhhHHhcCCccccc
Confidence            8888754322    222212346788888888887754321   233345566788888888888774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=5.1e-09  Score=94.20  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=20.6

Q ss_pred             ccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          414 NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       414 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      +..|+.|++|.++.|+.|-    ++..-+    ....|+|.+|++.+|-
T Consensus       334 ~~kf~~L~~lSlsRCY~i~----p~~~~~----l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCYDII----PETLLE----LNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHhcchheeeehhhhcCCC----hHHeee----eccCcceEEEEecccc
Confidence            4556666666666666443    222211    2344566666655553

>PLN03150 hypothetical protein; Provisional

Probab=98.43  E-value=5.8e-07  Score=94.49  Aligned_cols=104  Identities=26%  Similarity=0.324  Sum_probs=82.9

Q ss_pred             CCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920          146 NLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI  222 (505)
Q Consensus       146 ~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  222 (505)
                      .++.|+|++|.+.+  |..++++++|+.|++++|++. .+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            47788888888876  678888899999999988887 67878888999999999886666677776 788899999999


Q ss_pred             eCCCCCCchhhhhccccccccCC-CCcCEEEeeccc
Q 037920          223 GYNSFGKWEVEMEGVKNASLHEL-KHLTSLELHIKD  257 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~  257 (505)
                      ++|.+       .+.+|..+..+ .++..+++.+|.
T Consensus       498 s~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSL-------SGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcc-------cccCChHHhhccccCceEEecCCc
Confidence            88877       66777777653 456677777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=2.3e-07  Score=65.38  Aligned_cols=47  Identities=34%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             CccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeecc
Q 037920          109 SSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNC  155 (505)
Q Consensus       109 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~  155 (505)
                      .+..++..+|.++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus        12 ~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   12 KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            333444434444444444444444444332 23344444444444433

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=2.4e-08  Score=100.11  Aligned_cols=187  Identities=25%  Similarity=0.301  Sum_probs=106.6

Q ss_pred             cCCCcEEEecCCCCccCC-CCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920           72 IKLYTSIVLHDIRTNLLP-EVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  150 (505)
                      +..+..+.+..|.+..+. ....+++|..|++   +.+.+..+... +..+++|++|++++|.|+++ ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l---~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDL---YDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeec---cccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhh
Confidence            444555556666665532 2446677777777   55555555442 25677777777777777766 335666667777


Q ss_pred             EeeccCCCCcccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          151 SLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       151 ~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      ++.+|.+..+..+..+++|+.+++++|.+..+... ...+.+++.+.+.+ +.+..+..  +..+..+..+++..|.++.
T Consensus       146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             eeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee
Confidence            77777777766666677777777777777666432 46667777777766 33333322  2333334444555554433


Q ss_pred             chhhhhccccccccCCC--CcCEEEeecccCCCCCCCCC-CCCCcEEEE
Q 037920          230 WEVEMEGVKNASLHELK--HLTSLELHIKDVNTLPRGLF-FPKLQRYKI  275 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~  275 (505)
                      ..         .+..+.  +|+.+++..+.+...+..+. +.++..+.+
T Consensus       223 ~~---------~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~  262 (414)
T KOG0531|consen  223 LE---------GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL  262 (414)
T ss_pred             cc---------CcccchhHHHHHHhcccCccccccccccccccccccch
Confidence            21         122222  26777777777665532221 444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.36  E-value=3.1e-08  Score=99.35  Aligned_cols=106  Identities=28%  Similarity=0.371  Sum_probs=56.5

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeee
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR  198 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  198 (505)
                      ..+.+|..|++.+|.+.++...+..+++|++|++++|.|+.+..+..+..|+.|++.+|.++.+. .+..++.|+.++++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence            44555666666666655554435555666666666666555555555555666666666555443 33445555555555


Q ss_pred             CCCCCCccCh-hhhcCCCCccEEEeeCCCC
Q 037920          199 DCRELEVIPA-NVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       199 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  227 (505)
                      + +.+..+.. . ...+.+++.+.+.+|.+
T Consensus       171 ~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  171 Y-NRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             c-chhhhhhhhh-hhhccchHHHhccCCch
Confidence            5 33333332 1 14455555555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.34  E-value=5e-07  Score=63.62  Aligned_cols=58  Identities=31%  Similarity=0.449  Sum_probs=45.8

Q ss_pred             CCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCC
Q 037920          122 MQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNI  179 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l  179 (505)
                      ++|++|++++|.++.+|. .+..+++|++|++++|.+..  +..+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            467888888888888764 67788888888888888877  46778888888888888764

...

>PLN03150 hypothetical protein; Provisional

Probab=98.33  E-value=1.2e-06  Score=91.99  Aligned_cols=101  Identities=26%  Similarity=0.409  Sum_probs=82.1

Q ss_pred             CCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCC
Q 037920          168 KLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELK  246 (505)
Q Consensus       168 ~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  246 (505)
                      .++.|+++++.++ .+|..+.++++|+.|++++|...+.+|.. ++.+++|+.|++++|.+       .+.+|..+++++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l-------sg~iP~~l~~L~  490 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF-------NGSIPESLGQLT  490 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC-------CCCCchHHhcCC
Confidence            4788999999887 56888999999999999997666678876 89999999999999988       677888999999


Q ss_pred             CcCEEEeecccCC-CCCCCCC--CCCCcEEEEE
Q 037920          247 HLTSLELHIKDVN-TLPRGLF--FPKLQRYKIH  276 (505)
Q Consensus       247 ~L~~L~l~~~~~~-~l~~~~~--~~~L~~L~~~  276 (505)
                      +|+.|++++|.+. .+|..+.  ..++..+.+.
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEec
Confidence            9999999999886 6776643  2344455544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=6.1e-07  Score=81.07  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             cccccccccccccccccccccceeeccCccccccccccEEEEccccccccc
Q 037920          384 TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEEL  434 (505)
Q Consensus       384 ~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i  434 (505)
                      .+|.+..|++..+++.+|..-       ..+..||+|..|.+.+.|....+
T Consensus       222 ~~p~~~~LnL~~~~idswasv-------D~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASV-------DALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CCCcchhhhhcccccccHHHH-------HHHcCCchhheeeccCCcccccc
Confidence            567777777777777666221       11667778888877777755544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=1.6e-08  Score=101.38  Aligned_cols=130  Identities=25%  Similarity=0.315  Sum_probs=100.8

Q ss_pred             CCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCC
Q 037920          122 MQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCR  201 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  201 (505)
                      ..|.+.++++|.+..+-.++.-++.|+.|+|+.|++.+...+..+++|++||+++|.++.+|.--..--+|+.|++++ +
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N  242 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-N  242 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-c
Confidence            457777888888877767788899999999999999998888999999999999999988874322223499999988 6


Q ss_pred             CCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920          202 ELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT  260 (505)
Q Consensus       202 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  260 (505)
                      -++.+..  +.++++|+.|++++|-+.+...      -.-+..+..|+.|++.+|.+..
T Consensus       243 ~l~tL~g--ie~LksL~~LDlsyNll~~hse------L~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  243 ALTTLRG--IENLKSLYGLDLSYNLLSEHSE------LEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HHHhhhh--HHhhhhhhccchhHhhhhcchh------hhHHHHHHHHHHHhhcCCcccc
Confidence            6666665  7899999999999887754321      2235667788889998887643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.19  E-value=4e-06  Score=71.77  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc--ccccCCCCCCeeE
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP--SSLGLLSNLRTLS  151 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~  151 (505)
                      ....+++++|.+..++....++.|.+|.+   +++.+..+.+.+-..+++|..|.+.+|.+.++.  ..+..++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll---~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLL---NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEe---cCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45667777777777776667778888887   777777777666566777888888887777643  2355677777777


Q ss_pred             eeccCCCC-----cccccCCCCCcEEEccC
Q 037920          152 LDNCKLLD-----ITVVRDLKKLEILCLRG  176 (505)
Q Consensus       152 L~~~~l~~-----~~~i~~l~~L~~L~l~~  176 (505)
                      +-+|+++.     .-.+.++++|++||+.+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77777654     25566677777777655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=3.3e-06  Score=54.53  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=18.8

Q ss_pred             CccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC
Q 037920          123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD  159 (505)
Q Consensus       123 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~  159 (505)
                      +|++|++++|.++++|+.+.++++|++|++++|.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4555555555555555545555555555555555444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.10  E-value=1.7e-06  Score=90.73  Aligned_cols=136  Identities=23%  Similarity=0.306  Sum_probs=90.5

Q ss_pred             CCCccEEEEeCCcCc--cCccccc-CCCCCCeeEeeccCCCC--c-ccccCCCCCcEEEccCCCCcccchhhhCCCCCCE
Q 037920          121 MMQVRVINLTNINLM--SLPSSLG-LLSNLRTLSLDNCKLLD--I-TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRL  194 (505)
Q Consensus       121 l~~L~~L~l~~~~~~--~l~~~l~-~l~~L~~L~L~~~~l~~--~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~  194 (505)
                      -.+|+.|+++|...-  ..|..++ .+|+|+.|.+.+-.+..  . .-..+++||..||+++++++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            367888888886522  2444443 47889999888766554  2 4445788999999999988888 68888999999


Q ss_pred             EeeeCCCCCCccC-hhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920          195 LGLRDCRELEVIP-ANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN  259 (505)
Q Consensus       195 L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (505)
                      |.+.+ -.+.... -..+.++++|+.||++........ ......-+.-..+|+||.||++++.+.
T Consensus       200 L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccC-CCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchh
Confidence            98876 2222211 112678889999998865543322 012222334455888999998877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.09  E-value=1.2e-06  Score=92.00  Aligned_cols=125  Identities=20%  Similarity=0.231  Sum_probs=70.9

Q ss_pred             cCCCcEEEecCCCC--ccCC-CC-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920           72 IKLYTSIVLHDIRT--NLLP-EV-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL  147 (505)
Q Consensus        72 ~~~l~~l~l~~~~~--~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  147 (505)
                      .+++++|++++...  ..-+ .. .-+|.|++|.+  .+.....+--..++.++++|+.||+|++.++.+ ..+++|++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence            44677777766443  1111 11 16677777777  222222211223356677777777777777766 556777777


Q ss_pred             CeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccch-------hhhCCCCCCEEeeeC
Q 037920          148 RTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPI-------EVSELARLRLLGLRD  199 (505)
Q Consensus       148 ~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~-------~i~~l~~L~~L~l~~  199 (505)
                      +.|.+.+-.+..   +..+.+|++|+.||++......-+.       .-..+|+||.|+.++
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            777776666554   4666677777777777653332211       112356666666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=1.6e-06  Score=78.46  Aligned_cols=198  Identities=16%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             cCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC--CCCCCCcEEEEEEcceeecccccce
Q 037920          212 SNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG--LFFPKLQRYKIHIGGYYYAGVWRRE  289 (505)
Q Consensus       212 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~~~~~~~~~~~~~~~~  289 (505)
                      ...+.++++++.+|.+++|+.     +...+.+||.|+.|++++|.+...-..  ....+|+.+.+.+...         
T Consensus        68 ~~~~~v~elDL~~N~iSdWse-----I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L---------  133 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSE-----IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL---------  133 (418)
T ss_pred             HHhhhhhhhhcccchhccHHH-----HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC---------
Confidence            356779999999999999865     334567899999999999987532211  2366777766643211         


Q ss_pred             EEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhh
Q 037920          290 LKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEI  369 (505)
Q Consensus       290 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~  369 (505)
                             .......+...+|.+++|+++.|.......--... ..--+.+++|.+..|..            ....+.+ 
T Consensus       134 -------~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~-e~~s~~v~tlh~~~c~~------------~~w~~~~-  192 (418)
T KOG2982|consen  134 -------SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI-EDWSTEVLTLHQLPCLE------------QLWLNKN-  192 (418)
T ss_pred             -------Chhhhhhhhhcchhhhhhhhccchhhhhccccccc-cccchhhhhhhcCCcHH------------HHHHHHH-
Confidence                   11122334444677777777765111110000000 01123555555555530            0000000 


Q ss_pred             hhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccccccccc
Q 037920          370 ILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVI  449 (505)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~  449 (505)
                                .-...||++..+.+..|.++..       ..|.+...+|.+--|.+.... |.+|...+       .+..
T Consensus       193 ----------~l~r~Fpnv~sv~v~e~PlK~~-------s~ek~se~~p~~~~LnL~~~~-idswasvD-------~Ln~  247 (418)
T KOG2982|consen  193 ----------KLSRIFPNVNSVFVCEGPLKTE-------SSEKGSEPFPSLSCLNLGANN-IDSWASVD-------ALNG  247 (418)
T ss_pred             ----------hHHhhcccchheeeecCcccch-------hhcccCCCCCcchhhhhcccc-cccHHHHH-------HHcC
Confidence                      1112588888888877766655       455557777777777776554 44442222       2457


Q ss_pred             ccccccccccCccccccccc
Q 037920          450 FPQLQYLKMDDLEKLRNFCT  469 (505)
Q Consensus       450 ~p~L~~L~l~~~~~L~~~~~  469 (505)
                      ||.|..|.+.+.|-+..+..
T Consensus       248 f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  248 FPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             CchhheeeccCCcccccccC
Confidence            89999999999887666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.92  E-value=4.2e-05  Score=74.27  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=19.4

Q ss_pred             cceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCC
Q 037920          309 QGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH  347 (505)
Q Consensus       309 ~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~  347 (505)
                      ++|+.|.+.+|  .. ...|..+    ..+|+.|.++.+
T Consensus       156 sSLk~L~Is~c--~~-i~LP~~L----P~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGC--SN-IILPEKL----PESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCC--Cc-ccCcccc----cccCcEEEeccc
Confidence            57788888777  32 2334333    357777777664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=1.6e-05  Score=51.29  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             CCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCccc
Q 037920          146 NLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKML  182 (505)
Q Consensus       146 ~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~l  182 (505)
                      +|++|++++|.+.+ ++.++++++|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555 33355555555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=5.2e-05  Score=73.62  Aligned_cols=133  Identities=16%  Similarity=0.318  Sum_probs=85.0

Q ss_pred             ccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCC-cCccCcccccCCCCCCe
Q 037920           71 AIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNI-NLMSLPSSLGLLSNLRT  149 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~  149 (505)
                      .+.++++|++++|.+.++|.  -..+|++|.+  .++.....+|..+   ..+|+.|++++| .+..+|+      +|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~L--snc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--LPNELTEITI--ENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--CCCCCcEEEc--cCCCCcccCCchh---hhhhhheEccCccccccccc------ccce
Confidence            45789999999999998884  3347999999  5566667777644   468999999998 5666664      4677


Q ss_pred             eEeeccCCCCcccccCC-CCCcEEEccCCC-C--cccchhhhCC-CCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeC
Q 037920          150 LSLDNCKLLDITVVRDL-KKLEILCLRGSN-I--KMLPIEVSEL-ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY  224 (505)
Q Consensus       150 L~L~~~~l~~~~~i~~l-~~L~~L~l~~~~-l--~~lp~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  224 (505)
                      |++..+....   +..+ .+|+.|.+.+++ .  ..+|.   .+ ++|++|.+.+|... .+|.. +  ..+|+.|.++.
T Consensus       117 L~L~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-L--P~SLk~L~ls~  186 (426)
T PRK15386        117 LEIKGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-L--PESLQSITLHI  186 (426)
T ss_pred             EEeCCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-c--cccCcEEEecc
Confidence            7776544332   2222 256667664432 1  11111   12 57888888886643 23432 2  25788888876


Q ss_pred             CC
Q 037920          225 NS  226 (505)
Q Consensus       225 ~~  226 (505)
                      +.
T Consensus       187 n~  188 (426)
T PRK15386        187 EQ  188 (426)
T ss_pred             cc
Confidence            53

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=2.9e-05  Score=66.56  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=49.4

Q ss_pred             CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhC-CCCCCEEeeeCCCCCCccCh-hhhcCCCCccEEEeeC
Q 037920          147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSE-LARLRLLGLRDCRELEVIPA-NVLSNLSHLEELYIGY  224 (505)
Q Consensus       147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~  224 (505)
                      ...++|++|.+.....+..++.|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+ +.+..+.. ..+..+|.|++|.+-+
T Consensus        44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecC
Confidence            444455555544444455555555555555555555333333 34555555555 22222211 0034555666666555


Q ss_pred             CCCCCchhhhhccccccccCCCCcCEEEee
Q 037920          225 NSFGKWEVEMEGVKNASLHELKHLTSLELH  254 (505)
Q Consensus       225 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  254 (505)
                      |.....    .+.--..+..+++|+.||+.
T Consensus       123 Npv~~k----~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  123 NPVEHK----KNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             Cchhcc----cCceeEEEEecCcceEeehh
Confidence            554332    11222345566666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.74  E-value=2.9e-05  Score=69.55  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=18.0

Q ss_pred             hcceeEEeecCCCCC--CcchhhhhhhccCCCCccEEEEeCCC
Q 037920          308 LQGIEDLGLSKLPEQ--DVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       308 ~~~L~~L~l~~~~~~--~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                      +++|+.|+|.+|...  +...+...+  ..++.|++|.+.+|-
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDCl  253 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCL  253 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchh
Confidence            455666666555111  112222222  345556666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.59  E-value=4.6e-06  Score=66.82  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=71.4

Q ss_pred             CCCcEEEecCCCCccCCC----CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCC
Q 037920           73 KLYTSIVLHDIRTNLLPE----VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLR  148 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~  148 (505)
                      .....+++++|.+-.++.    ......|...++   .++...++|+.+-.+++.++.+++.+|.+.++|.++..++.||
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~l---s~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISL---SDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEec---ccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence            345566777776644432    235556666666   5666667777766666677777777777777777777777777


Q ss_pred             eeEeeccCCCC-cccccCCCCCcEEEccCCCCcccc
Q 037920          149 TLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP  183 (505)
Q Consensus       149 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp  183 (505)
                      .|+++.|++.. |..+..+.++-.|+..++.+..+|
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            77777777666 666666777777777666555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.57  E-value=1.5e-06  Score=87.69  Aligned_cols=106  Identities=24%  Similarity=0.258  Sum_probs=84.2

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccC-CCCCcEEEccCCCCcccchhhhCCCCCCEEee
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRD-LKKLEILCLRGSNIKMLPIEVSELARLRLLGL  197 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  197 (505)
                      .-++.|+.|+|+.|++++.- .+..+++|++|+|++|.+..++.++. -.+|+.|.+++|.++.+. ++.++.+|+.|++
T Consensus       184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDl  261 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDL  261 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccch
Confidence            66889999999999999874 78999999999999999888433332 124999999999999884 8899999999999


Q ss_pred             eCCCCCCccCh-hhhcCCCCccEEEeeCCCC
Q 037920          198 RDCRELEVIPA-NVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       198 ~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  227 (505)
                      +. +.+..... ..+..+..|.+|++.+|.+
T Consensus       262 sy-Nll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  262 SY-NLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            98 44433221 1156778899999998865

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.30  E-value=3.1e-05  Score=62.14  Aligned_cols=88  Identities=19%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCC-CCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEe
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLL-SNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLG  196 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l-~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  196 (505)
                      .+...|+..++++|.++++|+.+... +.+..|++.+|.+++ |..+..++.|+.|+++.|.+...|.-+..+.+|-.|+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            34455555666666666666655433 356666666666666 5556666666666666666666665555566666665


Q ss_pred             eeCCCCCCccC
Q 037920          197 LRDCRELEVIP  207 (505)
Q Consensus       197 l~~~~~~~~~~  207 (505)
                      ..+ +....++
T Consensus       130 s~~-na~~eid  139 (177)
T KOG4579|consen  130 SPE-NARAEID  139 (177)
T ss_pred             CCC-CccccCc
Confidence            554 3333343

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.24  E-value=0.00024  Score=63.83  Aligned_cols=185  Identities=16%  Similarity=0.119  Sum_probs=104.9

Q ss_pred             ccCCCcEEEecCCCCcc-----CCC-CCCCCCccEEEeeecCCCCc-cccCh------hHHhCCCCccEEEEeCCcCcc-
Q 037920           71 AIKLYTSIVLHDIRTNL-----LPE-VVESPQLKLLFICADQESSS-LTIPN------KFFERMMQVRVINLTNINLMS-  136 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~~-~~~~~------~~~~~l~~L~~L~l~~~~~~~-  136 (505)
                      .+..+..+++++|.+..     +.. +.+-.+|+..++.+...... ..+++      ..+-+|++|+..++|+|.+.. 
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            46778899999998822     111 12566777777621111111 11222      123578888888888887653 


Q ss_pred             Cc----ccccCCCCCCeeEeeccCCCCc--cccc-------------CCCCCcEEEccCCCCcccchh-----hhCCCCC
Q 037920          137 LP----SSLGLLSNLRTLSLDNCKLLDI--TVVR-------------DLKKLEILCLRGSNIKMLPIE-----VSELARL  192 (505)
Q Consensus       137 l~----~~l~~l~~L~~L~L~~~~l~~~--~~i~-------------~l~~L~~L~l~~~~l~~lp~~-----i~~l~~L  192 (505)
                      .|    +.++..+.|.+|.+++|.+...  .-|+             +-+.|+.....+|++...|..     +..-.+|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            33    3456677888888888876541  2222             346777777777776644322     2223567


Q ss_pred             CEEeeeCCCCCCc----cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccC
Q 037920          193 RLLGLRDCRELEV----IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV  258 (505)
Q Consensus       193 ~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (505)
                      +.+.+..|..-..    +....+..+.+|+.|++..|.++....   ..+...++..+.|+.|.+..|-+
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS---~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS---RYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH---HHHHHHhcccchhhhccccchhh
Confidence            7777766321111    111113456677777777777655432   23344556666667666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.15  E-value=0.00012  Score=75.36  Aligned_cols=41  Identities=17%  Similarity=0.236  Sum_probs=24.0

Q ss_pred             cccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920          453 LQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR  494 (505)
Q Consensus       453 L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~  494 (505)
                      ++.|.+..|...+.-... .....+..+..+.+.+|+.+...
T Consensus       403 l~~L~l~~~~~~t~~~l~-~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLR-CLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             cceEecccCccccccchH-HHhhhhhccccCCccCcccccch
Confidence            677777777765321110 00111677888888888776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=4.7e-05  Score=68.48  Aligned_cols=98  Identities=26%  Similarity=0.238  Sum_probs=41.9

Q ss_pred             CccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccc--hhhhCCCCCCEEeeeCC
Q 037920          123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP--IEVSELARLRLLGLRDC  200 (505)
Q Consensus       123 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~  200 (505)
                      +.+.|+..++.+.++ .....++.|+.|.|+-|.|+.+..+..|++|++|+|..|.|..+.  ..+.++++|+.|-+..|
T Consensus        20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            334444444444432 112334444444444444444444444444555555444444332  23444455555544443


Q ss_pred             CCCCccC----hhhhcCCCCccEEE
Q 037920          201 RELEVIP----ANVLSNLSHLEELY  221 (505)
Q Consensus       201 ~~~~~~~----~~~~~~l~~L~~L~  221 (505)
                      ...+.-+    ...+.-+|+|++|+
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhcc
Confidence            3333222    11234455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.00035  Score=62.72  Aligned_cols=103  Identities=23%  Similarity=0.350  Sum_probs=54.2

Q ss_pred             CCCCccEEEEeCCcCccCcccccCCCCCCeeEeecc--CCCC--cccccCCCCCcEEEccCCCCccc--chhhhCCCCCC
Q 037920          120 RMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNC--KLLD--ITVVRDLKKLEILCLRGSNIKML--PIEVSELARLR  193 (505)
Q Consensus       120 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~--~l~~--~~~i~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~  193 (505)
                      .+..|+.|++.+..++.+ ..+..+++|++|.++.|  .+..  ....-++++|++|++++|+++.+  -..+..+++|.
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            445555555555555543 23445667777777777  3333  23333447777777777765532  12345566666


Q ss_pred             EEeeeCCCCCC--ccChhhhcCCCCccEEEee
Q 037920          194 LLGLRDCRELE--VIPANVLSNLSHLEELYIG  223 (505)
Q Consensus       194 ~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~  223 (505)
                      .|++..|....  ..-..++.-+++|.+|+-.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            66666654222  1122224445666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.00066  Score=60.96  Aligned_cols=81  Identities=21%  Similarity=0.282  Sum_probs=54.9

Q ss_pred             hCCCCccEEEEeCC--cCcc-CcccccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccc----hhhhC
Q 037920          119 ERMMQVRVINLTNI--NLMS-LPSSLGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLP----IEVSE  188 (505)
Q Consensus       119 ~~l~~L~~L~l~~~--~~~~-l~~~l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp----~~i~~  188 (505)
                      -.+++|+.|.++.|  ++.. ++.....+++|++|++++|.+..   +..+..+.+|..|++.+|..+.+-    ..+.-
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            45677777777777  3332 44445556888888888887665   456667788888888888666442    23455


Q ss_pred             CCCCCEEeeeC
Q 037920          189 LARLRLLGLRD  199 (505)
Q Consensus       189 l~~L~~L~l~~  199 (505)
                      +++|++|+-..
T Consensus       142 l~~L~~LD~~d  152 (260)
T KOG2739|consen  142 LPSLKYLDGCD  152 (260)
T ss_pred             hhhhccccccc
Confidence            68888887655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=7.2e-05  Score=67.37  Aligned_cols=105  Identities=28%  Similarity=0.387  Sum_probs=74.8

Q ss_pred             CCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccCh-hhhcCCCCccEEEe
Q 037920          144 LSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA-NVLSNLSHLEELYI  222 (505)
Q Consensus       144 l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l  222 (505)
                      +.+.+.|+..+|.+.++....+++.|+.|.|+-|+|+.+. .+..+++|++|++.. +.+..+.. .-+.++++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence            5667888899999888888888999999999999998884 578889999999988 44444432 11578888999988


Q ss_pred             eCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          223 GYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      ..|.......  ...--..+..+++|++||
T Consensus        96 ~ENPCc~~ag--~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAG--QNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccc--hhHHHHHHHHcccchhcc
Confidence            8775532211  111122455667777665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.18  E-value=0.0011  Score=68.19  Aligned_cols=95  Identities=23%  Similarity=0.358  Sum_probs=51.6

Q ss_pred             cccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc-
Q 037920          385 LPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE-  462 (505)
Q Consensus       385 ~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~-  462 (505)
                      +|+|+.|.+.+| .+++-....+       ...+|+|++|++++|..+++-    ++...   ...+|+|+.|.+..+. 
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i-------~~~~~~L~~L~l~~c~~~~d~----~l~~~---~~~c~~l~~l~~~~~~~  333 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSI-------AERCPSLRELDLSGCHGLTDS----GLEAL---LKNCPNLRELKLLSLNG  333 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHH-------HHhcCcccEEeeecCccchHH----HHHHH---HHhCcchhhhhhhhcCC
Confidence            667777776666 4544322211       555777888888877776422    12111   3346666665554443 


Q ss_pred             --cccccccCCcccccC-CCccceecccCccceee
Q 037920          463 --KLRNFCTGDVDILEF-PSLKELIINRCPEFLMR  494 (505)
Q Consensus       463 --~L~~~~~~~~~~~~~-~~L~~L~i~~C~~L~~~  494 (505)
                        .++.....+ ..... ..+..+.+..||+++..
T Consensus       334 c~~l~~~~l~~-~~~~~~d~~~~~~~~~~~~l~~~  367 (482)
T KOG1947|consen  334 CPSLTDLSLSG-LLTLTSDDLAELILRSCPKLTDL  367 (482)
T ss_pred             CccHHHHHHHH-hhccCchhHhHHHHhcCCCcchh
Confidence              344332110 01122 26777888888887766

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.02  E-value=0.022  Score=46.62  Aligned_cols=104  Identities=19%  Similarity=0.295  Sum_probs=38.0

Q ss_pred             ChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCC
Q 037920          114 PNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSEL  189 (505)
Q Consensus       114 ~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l  189 (505)
                      +...|.++.+|+.+.+.. .++.++ ..+..+++|+.+.+..+ +..  -..+..+.+++.+.+.. .+..++. .+..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            333445555555555543 233332 23444445555555442 333  13344454555555543 3333322 33345


Q ss_pred             CCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920          190 ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG  223 (505)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  223 (505)
                      ++|+.+.+.. + +..++...+... +|+.+.+.
T Consensus        81 ~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   81 TNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTECEEEETT-T--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccccCc-c-ccEEchhhhcCC-CceEEEEC
Confidence            5566665543 1 334443334444 55555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.00086  Score=57.81  Aligned_cols=68  Identities=16%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             ccccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          384 TLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       384 ~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      .+++++.|.+.+| .+.+|+.+.+       -+-.|+|+.|+|++|+.|++-    ++.    .+..+++|+.|.|.+++
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l-------~~~~~~L~~L~lsgC~rIT~~----GL~----~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERL-------GGLAPSLQDLDLSGCPRITDG----GLA----CLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHh-------cccccchheeeccCCCeechh----HHH----HHHHhhhhHHHHhcCch
Confidence            5888999999999 8888865432       335799999999999999843    332    24677999999999998


Q ss_pred             cccc
Q 037920          463 KLRN  466 (505)
Q Consensus       463 ~L~~  466 (505)
                      ....
T Consensus       188 ~v~~  191 (221)
T KOG3864|consen  188 YVAN  191 (221)
T ss_pred             hhhc
Confidence            7643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.93  E-value=0.025  Score=46.32  Aligned_cols=115  Identities=17%  Similarity=0.262  Sum_probs=51.9

Q ss_pred             CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCC
Q 037920           93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKL  169 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L  169 (505)
                      .+++|+.+.+   .. ....++...|..+.+|+.+.+..+ +..++. .+..++.|+++.+.. .+..  ...+..+++|
T Consensus        10 ~~~~l~~i~~---~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen   10 NCSNLESITF---PN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             T-TT--EEEE---TS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             CCCCCCEEEE---CC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            5667777776   32 345566666777777777777664 555433 456666777777754 3333  2455567778


Q ss_pred             cEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc
Q 037920          170 EILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHL  217 (505)
Q Consensus       170 ~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  217 (505)
                      +.+++..+ +..++ ..+.+. +|+.+.+..  .+..++...+..+++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            87777653 55553 345555 777776643  3344554445555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.59  E-value=0.006  Score=32.62  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=15.0

Q ss_pred             CccEEEEeCCcCccCcccccC
Q 037920          123 QVRVINLTNINLMSLPSSLGL  143 (505)
Q Consensus       123 ~L~~L~l~~~~~~~l~~~l~~  143 (505)
                      +|++||+++|.++.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            477788888877777766544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.33  E-value=0.0065  Score=32.46  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=12.6

Q ss_pred             CCcEEEccCCCCcccchhhhC
Q 037920          168 KLEILCLRGSNIKMLPIEVSE  188 (505)
Q Consensus       168 ~L~~L~l~~~~l~~lp~~i~~  188 (505)
                      +|++|++++|+++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.54  E-value=0.0058  Score=52.85  Aligned_cols=69  Identities=16%  Similarity=0.307  Sum_probs=53.8

Q ss_pred             ccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920          414 NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF  491 (505)
Q Consensus       414 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L  491 (505)
                      +..++.++.|.+.+|..+.++.. +.+      ....|+|+.|+|++|+.+++..-  +.+..+++|+.|.|++-|..
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L-~~l------~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCL-ERL------GGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HhccchhhhheeccccchhhHHH-HHh------cccccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchhh
Confidence            77889999999999998886642 222      22579999999999999977532  24778999999999997543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.67  E-value=0.046  Score=27.05  Aligned_cols=16  Identities=31%  Similarity=0.499  Sum_probs=6.5

Q ss_pred             CCcEEEccCCCCcccc
Q 037920          168 KLEILCLRGSNIKMLP  183 (505)
Q Consensus       168 ~L~~L~l~~~~l~~lp  183 (505)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.39  E-value=0.053  Score=26.82  Aligned_cols=16  Identities=44%  Similarity=0.754  Sum_probs=7.4

Q ss_pred             CccEEEEeCCcCccCc
Q 037920          123 QVRVINLTNINLMSLP  138 (505)
Q Consensus       123 ~L~~L~l~~~~~~~l~  138 (505)
                      +|+.|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666665544

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.79  E-value=0.41  Score=26.51  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=13.9

Q ss_pred             CCCCcEEEccCCCCcccchhh
Q 037920          166 LKKLEILCLRGSNIKMLPIEV  186 (505)
Q Consensus       166 l~~L~~L~l~~~~l~~lp~~i  186 (505)
                      +++|+.|++++|+++.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.79  E-value=0.41  Score=26.51  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=13.9

Q ss_pred             CCCCcEEEccCCCCcccchhh
Q 037920          166 LKKLEILCLRGSNIKMLPIEV  186 (505)
Q Consensus       166 l~~L~~L~l~~~~l~~lp~~i  186 (505)
                      +++|+.|++++|+++.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.14  E-value=0.34  Score=26.96  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=12.3

Q ss_pred             CCCccceecccCcccee
Q 037920          477 FPSLKELIINRCPEFLM  493 (505)
Q Consensus       477 ~~~L~~L~i~~C~~L~~  493 (505)
                      +|.|+.|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46778888888877653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.30  E-value=0.018  Score=50.95  Aligned_cols=60  Identities=5%  Similarity=-0.024  Sum_probs=30.0

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCC
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSN  178 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~  178 (505)
                      +.+..|..||++.+.+..+|..+..+..++.+++..|..+- |.+.+..+++++++..++.
T Consensus        62 s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   62 SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            33444444555555555555555555555555555544444 4555555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	505
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 156 KLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNL 214
           KL DI+ +++L  L  L L G+ ++ LP  V  +L  L+ L L +  +L+ +P  V   L
Sbjct: 74  KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKL 132
Query: 215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
           ++L  LY+ +N       +++ +      +L +LT L+L    + +LP G+F
Sbjct: 133 TNLTYLYLYHN-------QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 37/167 (22%)
Query: 105 DQESSSLT-IPNKFFERMMQVRVINLTNINXXXXXXXXXXXXXXXXXXXDNCKLLDITVV 163
           D +S+ L+ +P+K F R+ ++R++ L +                     +  + L   + 
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLND---------------------NKLQTLPAGIF 81
Query: 164 RDLKKLEILCLRGSNIKMLPIEVSE----LARLRLLGLRDCRELEVIPANVLSNLSHLEE 219
           ++LK LE L +  + ++ LPI V +    LA LRL    D  +L+ +P  V  +L+ L  
Sbjct: 82  KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL----DRNQLKSLPPRVFDSLTKLTY 137
Query: 220 LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
           L +GYN       E++ +      +L  L  L L+   +  +P G F
Sbjct: 138 LSLGYN-------ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 156 KLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNL 214
           KL DI+ +++L  L  L L G+ ++ LP  V  +L  L+ L L +  +L+ +P  V   L
Sbjct: 74  KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKL 132
Query: 215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYK 274
           ++L  L + +N       +++ +      +L +LT L+L    + +LP G+F    Q   
Sbjct: 133 TNLTYLNLAHN-------QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 275 IHIGGYYYAGVWRRELKICPDS 296
           + +        ++ +LK  PD 
Sbjct: 186 LRL--------YQNQLKSVPDG 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	505
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 11/162 (6%)

Query: 109 SSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI---TVVRD 165
           S     ++       ++ ++L+   ++++ S+   L  L  L   +  L  +   +V   
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 166 LKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224
           L+ L  L +  ++ ++    + + L+ L +L +      E    ++ + L +L  L +  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 225 NSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                     E +   + + L  L  L +   +  +L    +
Sbjct: 185 CQL-------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 15/157 (9%)

Query: 124 VRVINLTNINLMSLPSS-LGLLSNLRTLSLDNCKLLDITVV----RDLKKLEILCLRGSN 178
              + L +  L SLP      L+ L  LSL +  L               L+ L L  + 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 179 IKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVK 238
           +  +      L +L  L  +     ++   +V  +L +L  L I +              
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-------TRVAF 142

Query: 239 NASLHELKHLTSLEL-HIKDVNTLPRGLF--FPKLQR 272
           N   + L  L  L++            +F     L  
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 114 PNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDI---TVVRDLKKL 169
               F  +  +  +++++ +     +     LS+L  L +      +     +  +L+ L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 170 EILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG 228
             L L    ++ L     + L+ L++L +        +       L+ L+ L    N   
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-- 234

Query: 229 KWEVEMEGVKNASLHEL-KHLTSLELH 254
                +   K   L      L  L L 
Sbjct: 235 -----IMTSKKQELQHFPSSLAFLNLT 256

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 9e-16
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 15/167 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDIT--VVRDLKK 168
            I    F+ +  + ++ L+  ++ ++   +   L+NL TL L + +L  I       L K
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L+ L LR + I+ +P    + +  LR L L + + L  I       LS+L  L +   + 
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
                     +  +L  L  L  L+L    ++ +  G F     LQ+
Sbjct: 198 ---------REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLRTLSLDNCKLL---DITVVRDLK 167
           TIPN  F  + +++ + L N  + S+PS     + +LR L L   K L          L 
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 168 KLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
            L  L L   N++ +P  ++ L +L  L L     L  I       L HL++L++  +  
Sbjct: 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-- 241

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIH 276
                +++ ++  +   L+ L  + L   ++  LP  LF     L+R  +H
Sbjct: 242 -----QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKL 169
            I    FE +  +R +NL   NL  +P+ L  L  L  L L    L  +     + L  L
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 170 EILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           + L +  S I+++       L  L  + L     L ++P ++ + L HLE +++ +N +
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPW 291

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 10/222 (4%)

Query: 57  NEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQ----LKLLFICADQESSSLT 112
           + +    R + DE      +    H IR +     ++  Q      LL    ++      
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 113 IPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEIL 172
           I       +   ++ NLTN  +  +  ++  L+ L+ +   N           +   +  
Sbjct: 417 IKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDN--IAVDWEDAN 473

Query: 173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232
                  +   +  S L  L  + L +C  +  +P + L +L  L+ L I  N       
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQ 532

Query: 233 EMEGVKN--ASLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
                            +    +   ++   P      K+ +
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 19/165 (11%), Positives = 49/165 (29%), Gaps = 11/165 (6%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLG-LLSNLRTLSLDNCKLLDI---TVVRDLKKLEILC 173
           F   +++  + L    +  +P         +  L   + KL  I      + +  +  + 
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650

Query: 174 LRGSNIKMLPIEVS------ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
              + I      +S      +      + L     ++  P  + +  S +  + +  N  
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLM 709

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
                     K+ +      LT+++L    + +L        L  
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 9/173 (5%)

Query: 106 QESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGL--LSNLRTLSLDNCKLLDITVV 163
           Q  +  T      +   ++++  +   NL   P+S  L  +  L  L   + K+  +   
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591

Query: 164 RDLKKLEILCLRGSNIKMLPIEVSELAR-LRLLGLRDCRELEVIPANV-LSNLSHLEELY 221
               KL  L L  + I+ +P +       +  LG    + L+ IP      ++  +  + 
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVD 650

Query: 222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
             YN  G          +   ++  + +++ L   ++   P  LF     +  
Sbjct: 651 FSYNKIG--SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 29/154 (18%)

Query: 129 LTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI--TVVRDLKKLEILCLRG---------- 176
                  +   S   L +L  + L NC  +      + DL +L+ L +            
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 177 SNIKMLPIEVSELARLRLLGLRDCRELEVIPANV-LSNLSHLEELYIGYNSFGKWEVEME 235
           ++   L  +     ++++  +     LE  PA+  L  +  L  L   +N          
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKV-------- 585

Query: 236 GVKNASLHELKHLTSLE-LHIKD--VNTLPRGLF 266
                 L        L  L +    +  +P    
Sbjct: 586 ----RHLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 18/133 (13%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS--------SLGLLSNLRTLSLDNCKLLDI--- 160
             P + F     +  I L+N  + S+P         +      L T+ L   KL  +   
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 161 TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCREL------EVIPANVLSNL 214
                L  L  + +  +     P +    ++L+  G+R  R+          P   ++  
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTC 805

Query: 215 SHLEELYIGYNSF 227
             L +L IG N  
Sbjct: 806 PSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 50/208 (24%)

Query: 113 IPNKFFERMMQVRVINLTNINL-MSLPSSLGLLSNLRTLSLDNCKLLDI----------- 160
            P    +   +V  ++L        +P ++G L+ L+ LS                    
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 161 ----------------TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCR--- 201
                             +   ++L +  L    I   P E+  + +   + L+D +   
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGN 432

Query: 202 ---ELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN------------ASLHELK 246
               +  I    +  L+ L+ +Y   + F    + ++                 S   LK
Sbjct: 433 LTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 247 HLTSLEL-HIKDVNTLPRGLFF-PKLQR 272
            LT +EL +  ++  LP  L+  P+LQ 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQS 519

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 22/116 (18%)

Query: 112 TIPNKF-FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLE 170
           ++ + F    +  +  ++++     S P+     S L+   + + +  +           
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE----------- 790

Query: 171 ILCLRGSNI-KMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
                G+ I +  P  ++    L  L +     +  +   +      L  L I  N
Sbjct: 791 -----GNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTPQ---LYILDIADN 837

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 14/152 (9%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI-TVVRDLKKLEILCLRG 176
            + ++ ++ + L    + SLP+S+  L NL++L + N  L  +   +  L KLE L LRG
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238

Query: 177 SN-IKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
              ++  P      A L+ L L+DC  L  +P + +  L+ LE+L +             
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCV--------- 288

Query: 236 GVKN--ASLHELKHLTSLELHIKDVNTLPRGL 265
            +    + + +L     + +       L +  
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.7 bits (161), Expect = 6e-12
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 131 NINLMSLPSSLGLLSNLRTLSLDNCKLLDI-TVVRDLKKLEILCLRGSNIKMLPIEVSEL 189
            +           L NL++L L+   +  +   + +L+ L+ L +R S +  L   +  L
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228

Query: 190 ARLRLLGLRDCRELEVIPANVLSNLSHLEELYI-GYNSF 227
            +L  L LR C  L   P       + L+ L +   ++ 
Sbjct: 229 PKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNL 266

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 28/163 (17%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI-TVVRDLKKLE 170
             P++ F R+  ++ + +    LM LP ++   + L TL+L    L  +   +  L +L 
Sbjct: 95  QFPDQAF-RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 171 ILCLRGSN-IKMLP---------IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEEL 220
            L +R    +  LP          E   L  L+ L L     +  +PA+ ++NL +L+ L
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSL 211

Query: 221 YIGYNSFGKWEVEMEGVKNASL-HELKHLTSLE-LHIKDVNTL 261
            I  +              ++L   + HL  LE L ++    L
Sbjct: 212 KIRNSPL------------SALGPAIHHLPKLEELDLRGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 16/97 (16%), Positives = 24/97 (24%), Gaps = 6/97 (6%)

Query: 133 NLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP--IEVSELA 190
            L      L           +           +    +I    G  +K     +E +   
Sbjct: 24  ALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNPQIETRTGRALKATADLLEDATQP 81

Query: 191 RLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
               L LR    L   P      LSHL+ + I     
Sbjct: 82  GRVALELRSVP-LPQFPDQ-AFRLSHLQHMTIDAAGL 116

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 85  TNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN-LMSLPSSLGL 143
           + L P +   P+L+ L +       +   P  F      ++ + L + + L++LP  +  
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNY--PPIF-GGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 144 LSNLRTLSLDNCKLLDI--TVVRDLKKLEILCLRGSNIKMLP 183
           L+ L  L L  C  L    +++  L    I+ +       L 
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 8e-15
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDIT--VVRDLKK 168
            I    F  +  + V+ L   ++  +   +   L++L TL L +  L  I       L K
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L  L LR + I+ +P    + +  L  L L + ++LE I       L +L+ L +G  + 
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
                        +L  L  L  LE+       +  G F     L++
Sbjct: 209 ---------KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNC---KLLDITVVRDLK 167
            IP+  FE + ++R + L N  + S+PS +   + +L  L L      + +       L 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 168 KLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
            L+ L L   NIK +P  ++ L  L  L +        I       LS L++L++  +  
Sbjct: 197 NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ- 253

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIH 276
                 +  ++  +   L  L  L L   ++++LP  LF     L    +H
Sbjct: 254 ------VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 95  PQLKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD 153
           P L  L +    E   L  I    FE +  ++ +NL   N+  +P+ L  L  L  L + 
Sbjct: 171 PSLMRLDL---GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMS 226

Query: 154 NCKLLDIT--VVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANV 210
                +I       L  L+ L +  S + ++       LA L  L L     L  +P ++
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDL 285

Query: 211 LSNLSHLEELYIGYNSF 227
            + L +L EL++ +N +
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 20/176 (11%), Positives = 56/176 (31%), Gaps = 5/176 (2%)

Query: 80  LHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139
               +   +          L+  C + +    +I  K     ++   I   + N+  +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNITFVSK 200

Query: 140 SLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRD 199
           ++  L+ LR   + N   +   +    +            K   ++   L  L  + + +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA--QQYKTEDLKWDNLKDLTDVEVYN 258

Query: 200 CRELEVIPANVLSNLSHLEELYIGYNSF-GKWEVEMEGVKNASLHELKHLTSLELH 254
           C  L  +P   L  L  ++ + +  N      +++ +    A     + +  + + 
Sbjct: 259 CPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 125 RVINLTNINLMSLPSSL-GLLSNLRTLSLDNCKLLDI---TVVRDLKKLEILCLRG---- 176
             +NL    +  +P++  G    +  LS  + KL  I      + +  +  +        
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 177 ----SNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232
                N   L     +   +  + L + + +   P  + S  S L  + +  N   +   
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
                +N +      LTS++L    +  L        L  
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 130 TNINLMSLPSSLGLLSNLRTLSLDNCKLLDITV---VRDLKKLEILCLRGSNIKMLPIEV 186
              +     +   +   ++ + +    L    V   ++ +KKL +L    + ++      
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349

Query: 187 SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELK 246
               +L  L L   + +  IPAN       +E L   +N                   + 
Sbjct: 350 GSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK------YIPNIFDAKSVS 402

Query: 247 HLTSLELH 254
            +++++  
Sbjct: 403 VMSAIDFS 410

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 15/157 (9%), Positives = 47/157 (29%), Gaps = 20/157 (12%)

Query: 109 SSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI--TVVRDL 166
            +  +      +M ++ ++      L     + G    L +L+L   ++ +I        
Sbjct: 318 KTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 167 KKLEILCLRGSNIKMLP--IEVSELARLRLLGLRDCRELEVIPANVLS-------NLSHL 217
           +++E L    + +K +P   +   ++ +  +       +  +                ++
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINV 435

Query: 218 EELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
             + +  N                      L+S+ L 
Sbjct: 436 SSINLSNNQI-------SKFPKELFSTGSPLSSINLM 465

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 14/123 (11%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 112 TIPNKF-FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI--------TV 162
            + + F    +  +  I+L+  +    P+     S L+   + N +              
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 163 VRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222
           +     L  L +  ++I+ +  ++     + +L ++D      I  + +          +
Sbjct: 562 ITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNP-NISIDLSYVCPYIEAGMYML 618

Query: 223 GYN 225
            Y+
Sbjct: 619 FYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 35/166 (21%)

Query: 123 QVRVINLTNINL-MSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILC----LRGS 177
           +V  ++L        +P ++G L+ L  L+L +        +   K +         +  
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 178 NIKMLPIEVSELARLRLLGLRDCR----------------------------ELEVIPAN 209
            +      V    R     L                                 +  +   
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 210 VLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI 255
            +  L+ L + Y+G + F   E   E  +N +    +   + +L  
Sbjct: 202 -VMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKW 245

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 12/160 (7%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKL--LDITVVRDLKK 168
            I N   +R + ++ + LT+  + ++   S   L +L  L L    L  L  +  + L  
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 169 LEILCLRGSNIKMLP--IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
           L  L L G+  K L      S L +L++L + +      I     + L+ LEEL I  + 
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                      +  SL  +++++ L LH+K    L     
Sbjct: 186 LQS-------YEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 15/127 (11%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKL----------LDI 160
           +   K  + +  V  + L     + L    + + S++  L L +  L           + 
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 161 TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEEL 220
             +        + +   ++  +   +++++ L  L     + L+ +P  +   L+ L+++
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKI 306

Query: 221 YIGYNSF 227
           ++  N +
Sbjct: 307 WLHTNPW 313

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDI--TVVRDLKK 168
            I +        ++V+ L +  + ++   +   L +L  L L +  L  +  +    L  
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 169 LEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
           L+ L L G+  + L +      L  L+ L + +      I     + L+ L EL I   S
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQ 271
                      ++ SL  ++ +  L LH+ +   L          ++
Sbjct: 160 L-------RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 51/346 (14%), Positives = 120/346 (34%), Gaps = 46/346 (13%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDIT--VVRDLKKLEILCLRGSNIKMLP 183
           V +  + +  S+PS  GL + +++L L   K+  I    +R    L++L L+ S I  + 
Sbjct: 9   VCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 184 IEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL 242
            +    L  L  L L D   L  + ++    LS L+ L +  N +            +  
Sbjct: 67  GDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPY------QTLGVTSLF 119

Query: 243 HELKHLTSLEL-HIKDVNTLPRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIR 299
             L +L +L + +++  + + R  F     L   ++ I                    +R
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN--ELEIKAL----------------SLR 161

Query: 300 -LKDGLIVQLQGIEDLGLSKLP-EQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRR 357
             +   +  ++ I  L L        ++ F + L+ V   +L+  ++     +P      
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 358 EESTDVMQ-SHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNT 416
                 +     ++   + N L      + +L  +E D   +  +           + + 
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL--------GDFNPSE 273

Query: 417 FVRLQRIEIKNCRVLEELIVVENQEERKNSIVI--FPQLQYLKMDD 460
              +  +       +  L + +       S V     +++ + +++
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 20/138 (14%), Positives = 54/138 (39%), Gaps = 21/138 (15%)

Query: 109 SSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL----------- 157
            S+    +    +  +  ++++      +P S      +R L+L +  +           
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433

Query: 158 --LDI------TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPAN 209
             LD+      +    L +L+ L +  + +K LP        L ++ +   + L+ +P  
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQ-LKSVPDG 491

Query: 210 VLSNLSHLEELYIGYNSF 227
           +   L+ L+++++  N +
Sbjct: 492 IFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 28/174 (16%)

Query: 108 SSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGL---LSNLRTLSLDNCKLLDI-TVV 163
                  +        ++ + L+  +L S+  +  +   L NL +L +       +    
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406

Query: 164 RDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223
           +  +K+  L L  + I+++   +     L +L + +   L+         L  L+ELYI 
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNN-LDSFS----LFLPRLQELYIS 459

Query: 224 YNSFGKWEVEMEGVKNASLHE---LKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
            N               +L +      L  +++    + ++P G+F     LQ+
Sbjct: 460 RNKL------------KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 12/163 (7%)

Query: 124 VRVINLTNINLMSLPSSLGL--LSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNI 179
             +++L++ NL  L +      L+NL +L L +  L  +       +  L  L L  +++
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 180 KMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVK 238
             L   + S+L  L +L L +   + V+  N   +++ L++LY+  N   ++ VE+    
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL---- 155

Query: 239 NASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGG 279
               ++L  L  L+L    +  LP       P   +  +++  
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 128 NLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI---TVVRDLKKLEILCLRGSNIKMLPI 184
           + +   L ++P    L S    L L +  L  +        L  L  L L  +++  +  
Sbjct: 24  SCSKQQLPNVPQ--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 185 EV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
           E    +  LR L L     L  +   + S+L  LE L +  N        +  V   +  
Sbjct: 82  EAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-------HIVVVDRNAFE 133

Query: 244 ELKHLTSLELHIKDVNTLPRGLF 266
           ++  L  L L    ++  P  L 
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELI 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 27/170 (15%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 109 SSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI---TVVRD 165
           S     ++       ++ ++L+   ++++ S+   L  L  L   +  L  +   +V   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 166 LKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224
           L+ L  L +  ++ ++    + + L+ L +L +      E    ++ + L +L  L +  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 225 NSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
                     E +   + + L  L  L +    + ++P G+F     LQ+
Sbjct: 480 CQL-------EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 59/380 (15%), Positives = 113/380 (29%), Gaps = 74/380 (19%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLP 183
                 +N   +P    L  + + L L    L  L         +L++L L    I+ + 
Sbjct: 11  TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 184 IEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL 242
                 L+ L  L L     ++ +     S LS L++L     +          ++N  +
Sbjct: 69  DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPI 120

Query: 243 HELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKD 302
             LK L  L +    + +     +F  L                   L+      + L  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTN-----------------LEH-----LDLSS 158

Query: 303 GLIVQLQGIEDLGLSKLPEQDV--DYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREES 360
             I  +   +   L ++P  ++  D  +N +  + P   K + +                
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL---------------- 202

Query: 361 TDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRL 420
                 H++ L+ N ++L V K  +  L  LE+  + +          +     +    L
Sbjct: 203 ------HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN--LEKFDKSALEGL 254

Query: 421 QRIEIKN-------------CRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNF 467
             + I+                +   L  V +      +I       Y       +L N 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 468 CTGDVDILEFPSLKELIINR 487
             G    L+  SLK L    
Sbjct: 315 KFGQFPTLKLKSLKRLTFTS 334

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 15/163 (9%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDI--TVVRDLKK 168
            + +  F    +++V++L+   + ++   +   LS+L TL L    +  +       L  
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L+ L    +N+  L       L  L+ L +              SNL++LE L +  N  
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 228 GKWEVEMEGVKNASLHELKHLT----SLELHIKDVNTLPRGLF 266
                  + +    L  L  +     SL+L +  +N +  G F
Sbjct: 162 -------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 25/205 (12%)

Query: 76  TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLM 135
           +S  L  +    + +   +   + L +       +         ++  ++ +  T+    
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLEL------VNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 136 SLPSSLGLLSNLRTLSLDNCKLLDITVVRD----LKKLEILCLRGSNIKMLPIEVSELAR 191
           +  S + L  +L  L L    L               L+ L L  + +  +      L +
Sbjct: 339 NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 192 LRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL 251
           L  L  +     ++   +V  +L +L  L I +              N   + L  L  L
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-------RVAFNGIFNGLSSLEVL 450

Query: 252 EL---HIKDVNTLPRGLF--FPKLQ 271
           ++     ++       +F     L 
Sbjct: 451 KMAGNSFQE--NFLPDIFTELRNLT 473

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 18/119 (15%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 114 PNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDNCKLLDIT---VVRDLKKL 169
               F  +  +  +++++ +     +     LS+L  L +      +     +  +L+ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 170 EILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
             L L    ++ L     + L+ L++L +   + L+ +P  +   L+ L+++++  N +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 530

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.7 bits (179), Expect = 9e-14
 Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 14/172 (8%)

Query: 110 SLTIPNKFFERMMQVRVINLTNINLMSLPSSLGL---LSNLRTLSLDNCKLLDIT--VVR 164
            L +     E +  +R ++L++ ++ +          LS+L++L+L   + L +     +
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 165 DLKKLEILCLRGSNIKMLPIEV--SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222
           +  +LE+L L  + +K+   +     L  L++L L     L++    +   L  L+ L +
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNL 456

Query: 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
             N F     +    K  SL  L  L  L L   D++++ +  F     +  
Sbjct: 457 QGNHF----PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 54/349 (15%), Positives = 101/349 (28%), Gaps = 66/349 (18%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKML 182
           +  N  N+ L  +P    L ++   L      L  +  T    L  L  L L    I  +
Sbjct: 15  KTYNCENLGLNEIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 183 PIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNAS 241
             +      RL  L L     L  +    LS    L+ L+               +    
Sbjct: 73  HEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGI-------SSIDFIP 124

Query: 242 LHELKHLTSLELHIKDVNTLPRGLFF--PKLQRYKIHIGGYYYAGVWRRELKICPDSKIR 299
           LH  K L SL L    ++++     F   KL+                          + 
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLK-------------------------VLD 159

Query: 300 LKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE 359
            ++  I  L   +   L +     ++   N++A + P                    +  
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF------------QSL 207

Query: 360 STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCV------- 412
           +    Q+  +I K   N+      T+  L     + ++ E I  +    +  +       
Sbjct: 208 NFGGTQNLLVIFKGLKNS------TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 413 SNNTFVRLQRIEIKNCRVLEELIVVENQ-EERKNSIVIFPQLQYLKMDD 460
             + F  +          L+EL +      E  + +V    L+ L +  
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 20/241 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDI--TVVRDLKK 168
           TI N  F R++ +  ++LT   +  +   +      L TL L    L+ +  T +   K 
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L+ L    + I  +          L  L L     +  I          L+ L    N+ 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKD--VNTLPRGLF-FPKLQRYKIHIGGYYYAG 284
                    +    +  L+  T+L L++    +  +  G F     Q   ++ GG     
Sbjct: 166 -------HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ--SLNFGGTQNLL 216

Query: 285 VWRRELKICPDSKIR---LKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKH 341
           V  + LK      +     +D     +      GL ++  + ++   +    +  +    
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 342 L 342
            
Sbjct: 277 F 277

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 109 SSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDI---TVVR 164
            +    N     +  ++ +NL+    +SL + +      L  L L   +L      +  +
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 165 DLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCR--ELEVIPANVLSNLSHLEELY 221
           +L  L++L L  S + +   ++   L  L+ L L+     +  +   N L  L  LE L 
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
           + +            +   +   LK +  ++L 
Sbjct: 483 LSFCDL-------SSIDQHAFTSLKMMNHVDLS 508

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 28/163 (17%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI 171
            I +  F     ++ ++LT  +L  LPS L  LS L+ L L   K  ++           
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC---------- 317

Query: 172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231
                       I  S    L  L ++   +   +    L NL +L EL + ++      
Sbjct: 318 -----------QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI---- 362

Query: 232 VEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
            E     N  L  L HL SL L   +  +L    F   P+L+ 
Sbjct: 363 -ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSL----PSSLGLLSNLRTLSLDNCKLLDIT--VVRD 165
               + F+ +  ++ +NL   +         +SL  L  L  L L  C L  I       
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 166 LKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           LK +  + L  + +    IE     +   L L     + +I  ++L  LS    + +  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH-ISIILPSLLPILSQQRTINLRQN 557

Query: 226 SF 227
             
Sbjct: 558 PL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 16/138 (11%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVR----DLKKLEILCLRGSN 178
               +NL   ++  +       +  ++L+    + L +         ++ L +      +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 179 IKMLP---IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
            + +     E      +  + L+       I +N     S L+EL +             
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHL-------S 291

Query: 236 GVKNASLHELKHLTSLEL 253
            + +  L  L  L  L L
Sbjct: 292 ELPSG-LVGLSTLKKLVL 308

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 13/160 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSL-DNCKL--LDITVVRDLK 167
            +P   F     + ++ L +  L  + + +   L+ L  L L DN +L  +D      L 
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 168 KLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
           +L  L L    ++ L   +   LA L+ L L+D   L+ +P +   +L +L  L++  N 
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR 164

Query: 227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                     V   +   L  L  L LH   V  +    F
Sbjct: 165 I-------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 112 TIPNKFFERMMQVRVINLT-NINLMSLPSS-LGLLSNLRTLSLDNCKL--LDITVVRDLK 167
            I    F  +  +  ++L+ N  L S+  +    L  L TL LD C L  L   + R L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 168 KLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
            L+ L L+ + ++ LP +   +L  L  L L   R +  +P      L  L+ L +  N 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN- 187

Query: 227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
                  +  V   +  +L  L +L L   +++ LP         LQ 
Sbjct: 188 ------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDIT--VVRDLKK 168
           ++    F  + ++  ++L    L  L       L+ L+ L L +  L  +     RDL  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L  L L G+ I  +P      L  L  L L   R +  +  +   +L  L  LY+  N+ 
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN- 212

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELH 254
                 +  +   +L  L+ L  L L+
Sbjct: 213 ------LSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 12/143 (8%)

Query: 127 INLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVV--RDLKKLEILCLRGSNIKMLPI 184
            +     L ++P   G+ +  + + L   ++  +     R  + L IL L  + +  +  
Sbjct: 16  TSCPQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 185 EV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
              + LA L  L L D  +L  +       L  L  L++      +       +      
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-------LGPGLFR 126

Query: 244 ELKHLTSLELHIKDVNTLPRGLF 266
            L  L  L L    +  LP   F
Sbjct: 127 GLAALQYLYLQDNALQALPDDTF 149

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDIT--VVRDLKK 168
            +    F  +  ++ + L +  L +LP  +   L NL  L L   ++  +     R L  
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L+ L L  + +  +      +L RL  L L     L  +P   L+ L  L+ L +  N +
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLRTLSLDNCKL--LDITVVRDLKK 168
           ++P+K F R+ ++R++ L +  L +LP+ +   L NL TL + + KL  L I V   L  
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L  L L  + +K LP  V   L +L  L L     L+ +P  V   L+ L+EL +  N  
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-- 167

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                +++ V   +  +L  L +L+L    +  +P G F
Sbjct: 168 -----QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 127 INLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLPI 184
           ++ ++  L ++PS   + ++ + L L + KL  L       L KL +L L  + ++ LP 
Sbjct: 21  VDCSSKKLTAIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78

Query: 185 EV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
            +  EL  L  L + D + L+ +P  V   L +L EL +  N           V      
Sbjct: 79  GIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP---PRV----FD 130

Query: 244 ELKHLTSLELHIKDVNTLPRGLF 266
            L  LT L L   ++ +LP+G+F
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVF 153

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 124 VRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLDI--TVVRDLKKLEILCLRGSNIK 180
           + V+NLT+  L  L  ++    S L +L +    +  +   + + L  L++L L+ + + 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 181 MLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN 239
            L  +  +    L  L L     ++ I  N      +L  L + +N            K 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGL-------SSTKL 138

Query: 240 ASLHELKHLTSLELH 254
            +  +L++L  L L 
Sbjct: 139 GTQVQLENLQELLLS 153

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGL---LSNLRTLSLDNCKL--LDITVVRDL 166
            +    F  +  ++ + L  + L ++ SS      L NL  L L N  +  ++  ++  L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 167 KKLEILCLRGSNIKML---------PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHL 217
           +KLEIL L+ +N+  L            +  L+ L +L L      + IP  V  +L  L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFEL 562

Query: 218 EELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQ 271
           + + +G N+          +  +  +    L SL L    + ++ + +F P  +
Sbjct: 563 KIIDLGLNNL-------NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 11/163 (6%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLDI--TVVRDLKK 168
            + +K F     +  ++L + ++  +  +      NL TL L +  L          L+ 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 169 LEILCLRGSNIKMLP---IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           L+ L L  + I+ L    +++   + L+ L L   + ++         +  L  L++   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNV 205

Query: 226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFP 268
             G    E              + +L L    ++T     F  
Sbjct: 206 QLGPSLTEKLC----LELANTSIRNLSLSNSQLSTTSNTTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 42/173 (24%), Positives = 63/173 (36%), Gaps = 21/173 (12%)

Query: 95  PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL--GL-LSNLRTLS 151
            +L  LF+   Q   SLT           +R ++L+N  L +  ++   GL  +NL  L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 152 LDNCKLLDI--TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRD--------C 200
           L    L  +       L +LE   L  +NI+ L    +  L  +R L L+          
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL 253
             L  I       L  LE L +  N          G+K+     L +L  L L
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDI-------PGIKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSL---------PSSLGLLSNLRTLSLDNCKLLDIT- 161
            I +   E + ++ +++L + NL  L            L  LS+L  L+L++    +I  
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 162 -VVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEE 219
            V +DL +L+I+ L  +N+  LP  V +    L+ L L+      V          +L E
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 220 LYIGYNSF 227
           L + +N F
Sbjct: 614 LDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 125 RVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKL-----LDITVVRDLKKLEILCLRGSN 178
           + + L++  +    P     +  L  L L+N +L       + +      +  L L  S 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 179 IKMLPIEV---SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
           +           +   L +L L     L V+  +  + L  LE  ++ YN+        +
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNI-------Q 285

Query: 236 GVKNASLHELKHLTSLELH 254
            + + SLH L ++  L L 
Sbjct: 286 HLFSHSLHGLFNVRYLNLK 304

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 19/172 (11%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLDITVVRD----- 165
            I +  F+ +  +  +N+ + ++  +  +    L NL+ LSL N      T+  +     
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 166 -LKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223
               L IL L  + I  +  +  S L  L +L L      + +       L ++ E+Y+ 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 224 YNSFGKWEVEMEGVKNASLHELKHLTSLEL---HIKDVNTLPRGLF-FPKLQ 271
           YN +         +   S   +  L  L L    +K+V++ P        L 
Sbjct: 439 YNKY-------LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 54/387 (13%), Positives = 116/387 (29%), Gaps = 86/387 (22%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184
            V + +++ L  +P    L +N+  L+L + +L  +                        
Sbjct: 7   EVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRLP---------------------AA 43

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
             +  ++L  L +     +  +   +   L  L+ L + +N           + + +   
Sbjct: 44  NFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNEL-------SQLSDKTFAF 95

Query: 245 LKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIR-LK 301
             +LT L L    +  +    F     L    + +                  + +   K
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLIT--LDLS----------------HNGLSSTK 137

Query: 302 DGLIVQLQGIEDLGLS-----KLPEQDVDYFVNELAKVGPSQLKHLH-----IWNHPPNP 351
            G  VQL+ +++L LS      L  +++D F         S LK L      I    P  
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIF-------ANSSLKKLELSSNQIKEFSPGC 190

Query: 352 AESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSC 411
             +  R     +  ++  +       L +E +    + NL L +  +     +    +  
Sbjct: 191 FHAIGRLFGLFL--NNVQLGPSLTEKLCLE-LANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 412 V-------SNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIF--PQLQYLKMDDLE 462
                   S N    +          LE   +  N  +   S  +     ++YL +    
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--- 304

Query: 463 KLRNFCTGDVDILEFPSLKELIINRCP 489
             R+F    + +   P + +       
Sbjct: 305 --RSFTKQSISLASLPKIDDFSFQWLK 329

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           M  +  I L NIN+  L + +    N++ L+++N    +   +  L  LE L + G ++ 
Sbjct: 43  MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 181 MLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN 239
              I  +S L  L LL +      +      ++ L  +  + + YN           + +
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNG---------AITD 151

Query: 240 AS-LHELKHLTSLEL---HIKDVNTL 261
              L  L  L SL +    + D   +
Sbjct: 152 IMPLKTLPELKSLNIQFDGVHDYRGI 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184
             +N       +   +   +++L  ++L N  + D+T +     ++ L +   +      
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN- 82

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
            +S L+ L  L +     +       LS L+ L  L I +++     +         ++ 
Sbjct: 83  PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILT-------KINT 134

Query: 245 LKHLTSLELH----IKDVNTL 261
           L  + S++L     I D+  L
Sbjct: 135 LPKVNSIDLSYNGAITDIMPL 155

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 128 NLTNINLMS------LPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNI 179
           NL  + +M          +L  L++L  L + +       +T +  L K+  + L  +  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 180 KMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231
               + +  L  L+ L ++     +      + +   L +LY    + G  +
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 83  IRTNLLPEVVESPQLKLLFICADQESSSLTIPN-KFFERMMQVRVINLTNINLMSLPSSL 141
           + ++ +P +     L LL I      S+           + +V  I+L+    ++    L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDI----SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

Query: 142 GLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNI 179
             L  L++L++    + D   + D  KL  L      I
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDIT--VVRDLKK 168
            I ++ F  +  +  + L   NL S+P+ +L  L  L  L L +  +  I     + L +
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 169 LEILCLRGSN-IKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L++L +     +  +         L  L +  C  L  +P   + +L +L  L + YN  
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN-- 258

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
                 +  ++ + LHEL  L  ++L    +  +    F     L+ 
Sbjct: 259 -----PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIK 180
           Q R +       +++P   G+ +  R L L   ++  L+         LE L L  + + 
Sbjct: 12  QDRAVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 181 MLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN 239
            +     + L  LR LGLR  R L++IP  V + LS+L +L I  N           + +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKI-------VILLD 121

Query: 240 ASLHELKHLTSLELHIKDVNTLPRGLFF--PKLQR 272
               +L +L SLE+   D+  +    F     L++
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDIT--VVRDLKK 168
           T+    F     +  + L    + ++   +   L NLRTL L + +L  I   V   L  
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L  L +  + I +L   +  +L  L+ L + D   L  I     S L+ LE+L +   + 
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                    +   +L  L  L  L L   ++N +    F
Sbjct: 165 TS-------IPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDI--TVVRDLKK 168
           +IP +    +  + V+ L ++N+ ++   S   L  L+ L + +   LD           
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L  L +   N+  +P      L  LR L L     +  I  ++L  L  L+E+ +     
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ- 283

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGG 279
                 +  V+  +   L +L  L +    + TL   +F     L+   + +  
Sbjct: 284 ------LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET--LILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 95  PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLD 153
            +LK+L I        L          + +  +++T+ NL ++P  ++  L  LR L+L 
Sbjct: 200 YRLKVLEI---SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 154 NCKLLDI--TVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANV 210
              +  I  +++ +L +L+ + L G  + ++       L  LR+L +   + L  +  +V
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESV 315

Query: 211 LSNLSHLEELYIGYNSF 227
             ++ +LE L +  N  
Sbjct: 316 FHSVGNLETLILDSNPL 332

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
            E +  +  + +    + S+   +  L+NL  L+L+  ++ DI+ + +L KL  L +  +
Sbjct: 40  QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
            I  +   +  L  LR L L +   +  I    L+NL+ +  L +G N            
Sbjct: 99  KITDIS-ALQNLTNLRELYLNEDN-ISDISP--LANLTKMYSLNLGANHNLS-------- 146

Query: 238 KNASLHELKHLTSLELH 254
             + L  +  L  L + 
Sbjct: 147 DLSPLSNMTGLNYLTVT 163

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
              ++++  + +   N ++  S+L  L+NLR L L+   + DI+ + +L K+  L L  +
Sbjct: 84  LSNLVKLTNLYIGT-NKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
           +       +S +  L  L + + + ++ +    ++NL+ L  L + YN            
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDIS------ 193

Query: 238 KNASLHELKHLTSLELH 254
               L  L  L     +
Sbjct: 194 ---PLASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 16/149 (10%)

Query: 116 KFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLR 175
                + ++  +NL   + +S  S L  ++ L  L++   K+ D+T + +L  L  L L 
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185

Query: 176 GSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
            + I+ +   ++ L  L        + +  I    ++N++ L  L IG N          
Sbjct: 186 YNQIEDIS-PLASLTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKIGNNKITDLS---- 237

Query: 236 GVKNASLHELKHLTSLEL---HIKDVNTL 261
                 L  L  LT LE+    I D+N +
Sbjct: 238 -----PLANLSQLTWLEIGTNQISDINAV 261

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKML 182
           +     L   ++  + +    L ++  L +   K+  I  +  L  LE L L G+ I  +
Sbjct: 23  EGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDI 81

Query: 183 PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL 242
              +S L +L  L +   + +  I A  L NL++L ELY+  +        +  +    L
Sbjct: 82  S-PLSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNED-------NISDISP--L 128

Query: 243 HELKHLTSLELH 254
             L  + SL L 
Sbjct: 129 ANLTKMYSLNLG 140

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 129 LTNINLMSLP----SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184
              +  +  P         L+      L    + D+    +L+ +  L + G  +  +  
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ- 60

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
            +  L  L  L L   + +  I    LSNL  L  LYIG N               +L  
Sbjct: 61  GIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDIS---------ALQN 108

Query: 245 LKHLTSLELH---IKDVNTL 261
           L +L  L L+   I D++ L
Sbjct: 109 LTNLRELYLNEDNISDISPL 128

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
              +  +         +  +   +  ++ L +L + N K+ D++ + +L +L  L +  +
Sbjct: 195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
            I  +   V +L +L++L +   + +  I    L+NLS L  L++  N  G  ++E    
Sbjct: 254 QISDIN-AVKDLTKLKMLNVGSNQ-ISDISV--LNNLSQLNSLFLNNNQLGNEDME---- 305

Query: 238 KNASLHELKHLTSLEL---HIKDVNTL 261
               +  L +LT+L L   HI D+  L
Sbjct: 306 ---VIGGLTNLTTLFLSQNHITDIRPL 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 116 KFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLR 175
                + Q+  + +   N +S  +++  L+ L+ L++ + ++ DI+V+ +L +L  L L 
Sbjct: 237 SPLANLSQLTWLEIGT-NQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295

Query: 176 GSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
            + +    +EV   L  L  L L     +  I    L++LS ++       
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFANQ 343

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 27/191 (14%), Positives = 69/191 (36%), Gaps = 12/191 (6%)

Query: 68  DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVI 127
               +K    +     +       V+ P L+ L + +    S     ++       ++ +
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 128 NLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDIT---VVRDLKKLEILCLRGSNIKMLPI 184
           +L+   ++++ S+   L  L  L   +  L  ++   V   L+ L  L +  ++ ++   
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 185 EV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
            + + L+ L +L +      E    ++ + L +L  L +            E +   + +
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-------EQLSPTAFN 491

Query: 244 ELKHLTSLELH 254
            L  L  L + 
Sbjct: 492 SLSSLQVLNMS 502

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 59/373 (15%), Positives = 115/373 (30%), Gaps = 58/373 (15%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI--TVVRDLKKLEILCLRGSNIKMLP 183
                 +N   +P    L  + + L L    L  +         +L++L L    I+ + 
Sbjct: 11  TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 184 IEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL 242
                 L+ L  L L     ++ +     S LS L++L     +          ++N  +
Sbjct: 69  DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPI 120

Query: 243 HELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKD 302
             LK L  L +    + +     +F  L                   L+      + L  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTN-----------------LEH-----LDLSS 158

Query: 303 GLIVQLQGIEDLGLSKLPEQDV--DYFVNELAKVGPS-----QLKHLHIWNHPPNPAESK 355
             I  +   +   L ++P  ++  D  +N +  + P      +L  L + N+  +    K
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 356 RREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNN 415
              +    ++ H ++L    N   +EK     LE L              +        +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC----------NLTIEEFRLAYLD 268

Query: 416 TFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDIL 475
            ++            +    +V    ER          Q+L++ +  K   F T     L
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC-KFGQFPT-----L 322

Query: 476 EFPSLKELIINRC 488
           +  SLK L     
Sbjct: 323 KLKSLKRLTFTSN 335

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLDI--TVVRDLKK 168
            + +  F    +++V++L+   + ++   +   LS+L TL L    +  +       L  
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 169 LEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L+ L    +N+  L    +  L  L+ L +              SNL++LE L +  N  
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHI 255
                  + +    L  L  +  L L +
Sbjct: 162 -------QSIYCTDLRVLHQMPLLNLSL 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 112 TIPNKFFERMMQVRVINL--TNINLMSLPSSLGLLSNLRTLSLDNCKLLDI--TVVRDLK 167
           T+ + F   + Q+  ++   +N+  MS  S    L NL  L + +         +   L 
Sbjct: 387 TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 168 KLEILCLRGSNIK--MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
            LE+L + G++ +   LP   +EL  L  L L  C+ LE +     ++LS L+ L + +N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN 504

Query: 226 SFGKWEVEMEGVKNASLHELKHLTSLEL 253
           +F         +       L  L  L+ 
Sbjct: 505 NF-------FSLDTFPYKCLNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRD----LK 167
             P    + +   + +  T+    +  S + L  +L  L L    L              
Sbjct: 318 QFPTLKLKSL---KRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 168 KLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
            L+ L L  + +  +      L +L  L  +     ++   +V  +L +L  L I +   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELH 254
                      N   + L  L  L++ 
Sbjct: 434 -------RVAFNGIFNGLSSLEVLKMA 453

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSL--PSSLGLLSNLRTLSLDNCKL--LDITVVRDLK 167
           ++ N     +  ++ +N+ +  + S   P     L+NL  L L + K+  +  T +R L 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 168 KLEILC----LRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223
           ++ +L     L  + +  +     +  RL  L LR+  +   +    +  L+ LE   + 
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 224 YNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
              F + E  +E    ++L  L +LT  E  +  ++     + 
Sbjct: 234 LGEF-RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 113 IPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLDI---TVVRDLKK 168
                F  +  +  +++++ +           LS+L  L +      +     +  +L+ 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L  L L    ++ L     + L+ L++L +        +       L+ L+ L    N  
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 228 GKWEVEMEGVKNASLHEL-KHLTSLELH 254
                     K   L      L  L L 
Sbjct: 531 -------MTSKKQELQHFPSSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMS--LPSSLGLLSNLRTLSLDNCKLLDIT--VVRDLK 167
              N  F  +  + V+ +   +     LP     L NL  L L  C+L  ++      L 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 168 KLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNL-SHLEELYIGYN 225
            L++L +  +N   L       L  L++L       +       L +  S L  L +  N
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 553

Query: 226 SF 227
            F
Sbjct: 554 DF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 11/147 (7%)

Query: 127 INLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEV 186
           +   +  L  +      L+N+ + SL +  +  +         + L L   N K      
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL--VNCKFGQFPT 321

Query: 187 SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELK 246
            +L  L+ L     +           +L  LE L +  N         +G  + S     
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGL-----SFKGCCSQSDFGTT 373

Query: 247 HLTSLELHIKDVNTLPRGLF-FPKLQR 272
            L  L+L    V T+        +L+ 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEH 400

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 12/164 (7%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI-TVVRDLKKLE 170
           T          ++  +NL    L  L     L   L TL L + +L  +  + + L  L 
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-PVLGTLDLSHNQLQSLPLLGQTLPALT 103

Query: 171 ILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229
           +L +  + +  LP+     L  L+ L L+    L+ +P  +L+    LE+L +  N    
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN---- 158

Query: 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQR 272
               +  +    L+ L++L +L L    + T+P+G F    L  
Sbjct: 159 ---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 21/156 (13%)

Query: 125 RVINLTNINLMSLPSS-LGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP 183
            +++L+   L +   + L   + L  L+LD  +L  + V   L  L  L L  + ++ LP
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 184 IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
           +    L  L +L +   R L  +P   L  L  L+ELY+  N               +L 
Sbjct: 94  LLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNEL------------KTLP 140

Query: 244 E-----LKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
                    L  L L   ++  LP GL      L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDIT---VVRDLKKLEILCLRGSNI 179
            +R ++L+    + + ++   L  L+ L   +  L  +T       L+KL  L +  +N 
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 180 KMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVK 238
           K+    +   L  L  L +      +   +NV +N ++L  L +            E + 
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-------EQIS 489

Query: 239 NASLHELKHLTSLELH 254
                 L  L  L + 
Sbjct: 490 WGVFDTLHRLQLLNMS 505

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 124 VRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDI--TVVRDLKKLEILCLRGSNIK 180
            + I+L+   L  L   S    S L+ L L  C++  I       L  L  L L G+ I+
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 181 MLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN 239
                  S L  L  L   + + L  + +  +  L  L++L + +N              
Sbjct: 94  SFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFI------HSCKLP 146

Query: 240 ASLHELKHLTSLELH 254
           A    L +L  ++L 
Sbjct: 147 AYFSNLTNLVHVDLS 161

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 112 TIPNKFFERMMQVRVINLT--NINLMSLPSSLGLLSNLRTLSLDNCKLLDIT--VVRDLK 167
              +  F  +  +  + +   +    +L +     +NL  L L  C+L  I+  V   L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 168 KLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
           +L++L +  +N+  L     ++L  L  L     R +E     +      L    +  NS
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556

Query: 227 F 227
            
Sbjct: 557 V 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 52/384 (13%), Positives = 120/384 (31%), Gaps = 33/384 (8%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLP 183
                +  L  +P    + S+ + + L    L  L      +  +L+ L L    I+ + 
Sbjct: 15  TYQCMDQKLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 184 IEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL 242
            +    L  L  L L     ++       S L+ LE L                +++  +
Sbjct: 73  DKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKL-------ASLESFPI 124

Query: 243 HELKHLTSLELHIKDVNTLPRGLFFPKLQR-YKIHIGGYYYAGVWRRELKICPDSKIRLK 301
            +L  L  L +    +++     +F  L     + +   Y   +   +L+   ++     
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 302 DGLIV---QLQGIEDLGLSKLPEQDVD----YFVNELAKVGPSQLKHLHIWNHPPNPAES 354
             L +    +  I+D     +   ++     +  + + K     L  LH+        + 
Sbjct: 185 S-LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 355 KRREESTDVM------QSHEIILKVNVNALFVEKVT----LPKLENLELDSINVERIWQS 404
           +R  E  +               ++     F + +     L  +  + L  ++++ +   
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303

Query: 405 HVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKL 464
                    +    +L++    +   L+ L +  N+       V  P L YL +     L
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-AL 362

Query: 465 RNFCTGDVDILEFPSLKELIINRC 488
                     L   SL+ L ++  
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 9/151 (5%)

Query: 112 TIPNKFFERMMQVRVINLTN--INLMSLPSSLGLLSNLRTLSLDNCKL-----LDITVVR 164
           ++ +    +++ ++ +N+ +  I+   LP+    L+NL  + L    +      D+  +R
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 165 DLKK-LEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223
           +  +    L +  + I  +  +  +  +L  L LR       I    L NL+ L    + 
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 224 YNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
              F K E  +E  + + +  L  +T  E  
Sbjct: 238 LGEF-KDERNLEIFEPSIMEGLCDVTIDEFR 267

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 18/183 (9%)

Query: 76  TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLM 135
           +++ L  +    L +V +  + + L I          +       +  ++ + LT  N  
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSI------IRCQLKQFPTLDLPFLKSLTLTM-NKG 340

Query: 136 SLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLK--KLEILCLRGSNIKMLPIEVSELAR 191
           S+      L +L  L L    L         DL    L  L L  +   ++      L  
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400

Query: 192 LRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL 251
           L+ L  +      V   +   +L  L  L I Y +        +   +     L  L +L
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-------KIDFDGIFLGLTSLNTL 453

Query: 252 ELH 254
           ++ 
Sbjct: 454 KMA 456

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 10/155 (6%)

Query: 97  LKLLFICADQESSSLTIPNKFFERM--MQVRVINLTNINLMSL-PSSLGLLSNLRTLSLD 153
            +L+      E +         E +  + +    LT  N  S        L+N+  +SL 
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 154 NCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSN 213
              +  +  V    K + L +    +K  P    +L  L+ L L   +   +        
Sbjct: 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNK-GSISFK--KVA 348

Query: 214 LSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHL 248
           L  L  L +  N+            +   + L+HL
Sbjct: 349 LPSLSYLDLSRNALS--FSGCCSYSDLGTNSLRHL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 24/168 (14%), Positives = 62/168 (36%), Gaps = 14/168 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKL--LDITVVRDLKK 168
            +P    +   QV ++NL ++ +  + + +      ++ L +    +  L   V +++  
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L +L L  +++  LP  +     +L  L + +   LE I  +     + L+ L +  N  
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL 177

Query: 228 GK---------WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                      +   +     ++L     +  L+     +N +   + 
Sbjct: 178 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 130 TNINLMSLPSSLGLLSNLRTLSLDN--CKLLDITVVRDLKKLEILCLRGSNIKMLPIEV- 186
                  + S+L        + +D     +        L   +I+  + S ++ LP  + 
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 187 SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELK 246
               ++ LL L D + +E I     +    +++LY+G+N+          +       + 
Sbjct: 66  DSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAI-------RYLPPHVFQNVP 117

Query: 247 HLTSLELHIKDVNTLPRGLF 266
            LT L L   D+++LPRG+F
Sbjct: 118 LLTVLVLERNDLSSLPRGIF 137

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 13/150 (8%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
               + V  ++ ++ ++  +     +   L  L L +  L D   + +   L  + L  +
Sbjct: 201 LAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 178 NIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEG 236
            ++ +      ++ RL  L + + R L  +       +  L+ L + +N     E     
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNR-LVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ 316

Query: 237 VKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                      L +L L    + TL     
Sbjct: 317 --------FDRLENLYLDHNSIVTLKLSTH 338

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 16/112 (14%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 118 FERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDITVV-RDLKKLEILCLR 175
                 +  ++L+   L  +       +  L  L + N +L+ + +  + +  L++L L 
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 176 GSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
            +++  +     +  RL  L L     +  +  +    L +L    + +N +
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNL---TLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITV-VRDLKKLE 170
            I    F +M ++  + ++N  L++L      +  L+ L L +  LL +        +LE
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321

Query: 171 ILCLRGSNIKMLPIEVSELARLRLLGLRD----CRELEVIPANVLSNLSHLEELY 221
            L L  ++I  L +       L+ L L      C  L  +  NV        + +
Sbjct: 322 NLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 13/161 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI 171
            I         ++ ++NL++  L      L  LS LRTL L+N  + ++ V      +E 
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---GPSIET 103

Query: 172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231
           L    +NI  +          + + L + + + ++        S ++ L +  N      
Sbjct: 104 LHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 232 VEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
                           L  L L    +  +   + F KL+ 
Sbjct: 161 ------FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 8e-10
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 4/118 (3%)

Query: 112 TIPNKFFERMMQVRVINLTN--INLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKL 169
            + +       +V+ ++L    I+ ++          L  L+L    + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 170 EILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           + L L  + +  +  E    A +  + LR+ + L +I    L    +LE   +  N F
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIE-KALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 18/134 (13%)

Query: 136 SLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARL 192
           ++       +  +   + +  L     ++ +    ++ L L G+ +  +     +   +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 193 RLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE 252
            LL L     L       L +LS L  L +  N                L     + +L 
Sbjct: 61  ELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYV------------QELLVGPSIETLH 105

Query: 253 LHIKDVNTLPRGLF 266
               +++ +     
Sbjct: 106 AANNNISRVSCSRG 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 12/152 (7%)

Query: 124 VRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDIT--VVRDLKKLEILCLRGSNIK 180
             +++L N  +  +       L NL TL L N K+  I+      L KLE L L  + +K
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
            LP ++     L+ L + +   +  +  +V + L+ +  + +G N      ++  G++N 
Sbjct: 114 ELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP-----LKSSGIENG 165

Query: 241 SLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
           +   +K L+ + +   ++ T+P+GL  P L  
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGL-PPSLTE 196

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 14/171 (8%)

Query: 109 SSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDIT--VVRDL 166
            S  I N  F+ M ++  I + + N+ ++P   GL  +L  L LD  K+  +    ++ L
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGL 215

Query: 167 KKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
             L  L L  ++I  +     +    LR L L + + L  +P   L++  +++ +Y+  N
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-LADHKYIQVVYLHNN 273

Query: 226 SFGKWEVEMEGVKNASLHELKHLTSLELH---IKDVNTLPRGLF--FPKLQ 271
           +                 +    + + L    ++    +    F       
Sbjct: 274 NISAIGSNDFC-PPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSL---PSSLGLLSNLRTLSLDNCKLLDITVVRDLKK 168
            +    F  + Q+ V+ L    L S      +   +  L  + + +  +  I        
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPS 193

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L  L L G+ I  +       L  L  LGL     +  +    L+N  HL EL++  N  
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK- 251

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPK 269
                 +  V    L + K++  + LH  +++ +    F P 
Sbjct: 252 ------LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPP 286

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 116 KFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLR 175
           +  + +  V  + L    L  +   L  L NL  L LD  K+ D++ ++DLKKL+ L L 
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117

Query: 176 GSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
            + I  +   +  L +L  L L + +  ++     LS L+ L+ L +  N          
Sbjct: 118 HNGISDIN-GLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDN---------- 163

Query: 236 GVKNASLHELKHLTSLEL------HIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRE 289
             + + +  L  LT L+       HI D+  L        L   ++         +  + 
Sbjct: 164 --QISDIVPLAGLTKLQNLYLSKNHISDLRALAG---LKNLDVLELFSQECLNKPINHQS 218

Query: 290 LKICPDSKIRLKDGLIVQLQGIED 313
             + P++ ++  DG +V  + I D
Sbjct: 219 NLVVPNT-VKNTDGSLVTPEIISD 241

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
            +   +    NL   ++     +   L+++  +  +N  +  +  ++ L  +  L L G+
Sbjct: 17  DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 75

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
            +  +   ++ L  L  L L + +  ++     L +L  L+ L + +N       ++ G+
Sbjct: 76  KLTDIK-PLTNLKNLGWLFLDENKIKDLSS---LKDLKKLKSLSLEHNGI----SDINGL 127

Query: 238 KNASLHELKHLTSLELH---IKDVNTL 261
            +     L  L SL L    I D+  L
Sbjct: 128 VH-----LPQLESLYLGNNKITDITVL 149

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 16/118 (13%)

Query: 147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVI 206
           +      +  +  I       +     L+  ++    +  +EL  +  +   +   ++ +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSV 58

Query: 207 PANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL---HIKDVNTL 261
               +  L ++ +L++  N     +          L  LK+L  L L    IKD+++L
Sbjct: 59  QG--IQYLPNVTKLFLNGNKLTDIK---------PLTNLKNLGWLFLDENKIKDLSSL 105

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKL--LDITVVRDLKK 168
            +    F     +  + L    +  +   +   L++L  L+L    L  +D  +  +L K
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           LE+L L  ++I+ L  +    L  L+ L L   + L+ +P  +   L+ L+++++  N +
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 45/243 (18%), Positives = 78/243 (32%), Gaps = 21/243 (8%)

Query: 110 SLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDNCKLLDITVVRD--- 165
            L I N  F  +  + ++ L     + L +     L+NL  L+L  C L    +  +   
Sbjct: 67  GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 166 -LKKLEILCLRGSNIKMLPIEV--SELARLRLLGLRDCRELEVIPANVLSNL--SHLEEL 220
            L  LE+L LR +NIK +        + R  +L L   + ++ I    L N    H   L
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLL 185

Query: 221 YIGYNSFGKW-EVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGG 279
            +   +     E  +   K  +  +   +T+L+L            FF  +   KI    
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ--- 242

Query: 280 YYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQL 339
                     L    +                   GL     +  D   +++  +  S  
Sbjct: 243 -------SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295

Query: 340 KHL 342
            H 
Sbjct: 296 SHF 298

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 129 LTNINLMSLP--SSLGL-LSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLP 183
             + N       +  GL  S ++T  L   K+  L  +V      LE L L  + I  + 
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315

Query: 184 IEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL 242
                 L  L  L L     L  I + +  NL  LE L + YN           + + S 
Sbjct: 316 DNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHI-------RALGDQSF 367

Query: 243 HELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
             L +L  L L    + ++P G+F     LQ+
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGL---LSNLRTLSLDNCKL--LDITVVRDL 166
            +    F R+  ++ + +       L         LS+L  L LD  +   L+      L
Sbjct: 44  ELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102

Query: 167 KKLEILCLRGSNIKMLPIEV---SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223
             LE+L L   N+    +       L  L +L LRD    ++ PA+   N+     L + 
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 224 YNSFGKWEVEMEGV------KNASLHELKHLTSLELHIKDVNTLPRGLFF 267
           +N   K +   E        K+ +L  L  +T  +++   +     G  F
Sbjct: 163 FN---KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 27/168 (16%)

Query: 118 FERMMQVRVINLTNINLMSLPS----SLGLLSNLRTLSLDNCKL----LDITVVRDLKK- 168
             +   +  ++L+        +         + +++L L N          T  +D    
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 169 ---------LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLE 218
                    ++   L  S I  L   V S    L  L L    E+  I  N    L+HL 
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLL 326

Query: 219 ELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
           +L +  N        +  + +     L  L  L+L    +  L    F
Sbjct: 327 KLNLSQN-------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           +  + L  ++I  L     S L  L+ L +       VI  N    LS L  L + YN F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELH---IKDVNTLPRGLF 266
                    ++  + + L +L  L L    +     L    F
Sbjct: 92  -------LQLETGAFNGLANLEVLTLTQCNLDGA-VLSGNFF 125

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 19/189 (10%)

Query: 74  LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN 133
           L ++ +  D   N +       +     +     + +++        + QV  +    + 
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ-----TDLDQVTTLQADRLG 57

Query: 134 LMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLR 193
           + S+   +  L+NL  ++  N +L DIT +++L KL  + +  + I  +   ++ L  L 
Sbjct: 58  IKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLT 115

Query: 194 LLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL 253
            L L + + +  I    L NL++L  L +  N+              +L  L  L  L  
Sbjct: 116 GLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNTISDIS---------ALSGLTSLQQLSF 163

Query: 254 HIKDVNTLP 262
             +  +  P
Sbjct: 164 GNQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
            + + ++  I + N N ++  + L  L+NL  L+L N ++ DI  +++L  L  L L  +
Sbjct: 86  LKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 144

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
            I  +   +S L  L+ L     +  ++ P   L+NL+ LE L I  N            
Sbjct: 145 TISDIS-ALSGLTSLQQLSF-GNQVTDLKP---LANLTTLERLDISSNKVSDIS------ 193

Query: 238 KNASLHELKHLTSLELH 254
               L +L +L SL   
Sbjct: 194 ---VLAKLTNLESLIAT 207

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 14/137 (10%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
             ++  +  +  TN  +  +   LG+L+NL  LSL+  +L DI  +  L  L  L L  +
Sbjct: 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
            I  L   +S L +L  L L   + +  I    L+ L+ L  L +  N            
Sbjct: 254 QISNLA-PLSGLTKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLEDIS------ 303

Query: 238 KNASLHELKHLTSLELH 254
               +  LK+LT L L+
Sbjct: 304 ---PISNLKNLTYLTLY 317

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
              +  +  + L   N +   S +  L NL  L+L    + DI+ V  L KL+ L    +
Sbjct: 283 LAGLTALTNLELNE-NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
            +  +   ++ L  +  L     +  ++ P   L+NL+ + +L +   ++
Sbjct: 342 KVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
              + +++ +   N N +S  SSL  L+N+  LS  + ++ D+T + +L ++  L L   
Sbjct: 327 VSSLTKLQRLFFYN-NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
                P+       + +          +I    +S+     E  I +N 
Sbjct: 386 AWTNAPVNYKAN--VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 25/179 (13%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLE 170
                  +    V+ ++L+   L  +  + L   + L  L+L +  L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 171 ILCLRGSNIKMLP-----------------IEVSELARLRLLGLRDCRELEVIPANVLSN 213
            L L  + ++ L                  +  S     + + L + + + ++       
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC 142

Query: 214 LSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
            S ++ L +  N                      L  L L    +  +   + F KL+ 
Sbjct: 143 RSRVQYLDLKLNEIDTVN------FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 4/118 (3%)

Query: 112 TIPNKFFERMMQVRVINLTN--INLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKL 169
            + +       +V+ ++L    I+ ++          L  L+L    + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 170 EILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           + L L  + +  +  E    A +  + LR+ + L +I    L    +LE   +  N F
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIE-KALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 18/134 (13%)

Query: 136 SLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARL 192
           ++       +  +   + +  L     ++ +    ++ L L G+ +  +     +   +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 193 RLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE 252
            LL L     L       L +LS L  L +  N                L     + +L 
Sbjct: 61  ELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYV------------QELLVGPSIETLH 105

Query: 253 LHIKDVNTLPRGLF 266
               +++ +     
Sbjct: 106 AANNNISRVSCSRG 119

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 20/172 (11%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLRTLSLDNCKL--LDITVVRDLKK 168
           TI +  ++ +  +  + LT   + SL       LS+L+ L      L  L+   +  LK 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 169 LEILCLRGSNIKMLPI-EV-SELARLRLLGLRDCRELEVIPANVLSNLSHLE----ELYI 222
           L+ L +  + I+   + E  S L  L  L L   + ++ I    L  L  +      L +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
             N        M  ++  +  E++ L  L L    + ++P G+F     LQ+
Sbjct: 185 SLN-------PMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQK 228

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 9/160 (5%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLRTLSLDNCKL--LDITVVRDLKK 168
            + +  F    +++V++L+   + ++       LS+L TL L    +  L +     L  
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L+ L    +N+  L       L  L+ L +              SNL++LE L +  N  
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 228 GKWEVEMEGVKNASLHELKHLT-SLELHIKDVNTLPRGLF 266
                         LH++  L  SL+L +  +N +  G F
Sbjct: 162 QSIYCTDL----RVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 23/123 (18%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGL---LSNLRTLSLDNCKL--LDITVVRDL 166
           ++ N     +  ++ +N+ +  + S          L+NL  L L + K+  +  T +R L
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 167 KKLEI----LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222
            ++ +    L L  + +  +     +  RL+ L L   + L+ +P  +   L+ L+++++
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 231

Query: 223 GYN 225
             N
Sbjct: 232 HTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
            + L L  + ++ L          L++L L  C E++ I      +LSHL  L +  N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-- 86

Query: 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQR 272
                 ++ +   +   L  L  L     ++ +L          L+ 
Sbjct: 87  -----PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 95  PQLKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMSLPSSLGL-LSNLRTLSL 152
           P+L  + I   +++++L  I  + F+ +  ++ + ++N  +  LP    +       L +
Sbjct: 79  PKLHEIRI---EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 153 -DNCKLLDI--TVVRDL-KKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA 208
            DN  +  I       L  +  IL L  + I+ +        +L  L L D   LE +P 
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 209 NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFP 268
           +V    S    L I              + +  L  LK L +   +  ++  LP      
Sbjct: 196 DVFHGASGPVILDISRTRI-------HSLPSYGLENLKKLRARSTY--NLKKLPTLEKLV 246

Query: 269 KLQR 272
            L  
Sbjct: 247 ALME 250

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 31/156 (19%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184
           RV       +  +PS   L  N   L                          + ++++  
Sbjct: 12  RVFLCQESKVTEIPS--DLPRNAIELRFVL----------------------TKLRVIQK 47

Query: 185 EV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
              S    L  + +     LEVI A+V SNL  L E+ I   +       +  +   +  
Sbjct: 48  GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN------NLLYINPEAFQ 101

Query: 244 ELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGG 279
            L +L  L +    +  LP       LQ+  + I  
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 124 VRVINLTNINL----MSLPSSLGLLSNLRTLSLDNCKLL-DITVVRDLKKLEILCLRGSN 178
           V  I+L++  L     ++ SSL  L+ L +L L N  +   ++  +    L  L L  ++
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 179 IK-MLP--IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
           +   +     +   + L+ L +           +    L+ LE L +  NS         
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-------S 164

Query: 236 GVKNASLHELKHLTSLE 252
           G              L+
Sbjct: 165 GANVVGWVLSDGCGELK 181

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 88  LPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLM-SLPSSLGLLSN 146
           +P + +   L+ L I  ++ S              +++++N+++   +  +P     L +
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGD--FSRAIS-TCTELKLLNISSNQFVGPIPPLP--LKS 270

Query: 147 LRTLSLDNCKL---LDITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRE 202
           L+ LSL   K    +   +      L  L L G++    +P      + L  L L     
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-N 329

Query: 203 LE-VIPANVLSNLSHLEELYIGYNSF 227
               +P + L  +  L+ L + +N F
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 88  LPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL 147
           +   ++   L++L + A+  S +  +     +   +++ + ++   + S    +    NL
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDVSRCVNL 202

Query: 148 RTLSLDNCKLL-DITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELE- 204
             L + +      I  + D   L+ L + G+ +       +S    L+LL +   +    
Sbjct: 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVG 261

Query: 205 VIPANVLSNLSHLEELYIGYNSF 227
            IP      L  L+ L +  N F
Sbjct: 262 PIPP---LPLKSLQYLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 128 NLTNINLM------SLPSSLGLLSNLRTLSLDNCKL-----LDITVVRDLKKLEILCLRG 176
            L ++ L        +P  L  +  L TL LD   L       +    +   L  + L  
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL---SNCTNLNWISLSN 499

Query: 177 SNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           + +   +P  +  L  L +L L +      IPA  L +   L  L +  N F
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 112 TIPNKFFERMM-QVRVINLTNINLM-SLPSSLGLLSNLRTLSLDNCKL-----LDITVVR 164
            I     +     ++ + L N      +P +L   S L +L L    L       +    
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--- 439

Query: 165 DLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELE-VIPANVLSNLSHLEELYI 222
            L KL  L L  + ++  +P E+  +  L  L L     L   IP+  LSN ++L  + +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPSG-LSNCTNLNWISL 497

Query: 223 GYNSF 227
             N  
Sbjct: 498 SNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLL----DITVVRDLKKLEILCLRGSNI- 179
             + L+N ++    S     ++L +L L    L      +T +     L+ L +  + + 
Sbjct: 80  ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 180 KMLPIE-VSELARLRLLGLRDCRELEVIPANV--LSNLSHLEELYIGYNSF 227
               +    +L  L +L L                     L+ L I  N  
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 13/152 (8%)

Query: 125 RVINLTNINLMSLPSS-LGLLSNLRTLSLDNCKLLDI--TVVRDLKKLEILCLRGSNIKM 181
           +++   N  +  LP++ L     +  L+L++ ++ +I          ++ L +  + I+ 
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 182 LPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
           LP  V   +  L +L L     L  +P  +  N   L  L +  N+       +E +++ 
Sbjct: 114 LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-------LERIEDD 165

Query: 241 SLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
           +      L +L+L    +  +   L  P L  
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSL-IPSLFH 196

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI 171
            I +  F+    ++ + L++  L  +   L L+ +L   ++    L   + +     +E 
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL---STLAIPIAVEE 215

Query: 172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231
           L    ++I ++   V     L +L L+    L       L N   L E+ + YN      
Sbjct: 216 LDASHNSINVVRGPV--NVELTILKLQHNN-LTDTAW--LLNYPGLVEVDLSYN------ 264

Query: 232 VEMEGVKNASLHELKHLTSLEL---HIKDVNTLPRGLFFPKLQR 272
            E+E +      +++ L  L +    +  +N   + +  P L+ 
Sbjct: 265 -ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI--PTLKV 305

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 136 SLPSSLGLLSNLRTLSLDN--CKLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARL 192
            + S+L        + +D     +        L   +I+  + S ++ LP  +     ++
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 193 RLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE 252
            LL L D + +E I     +    +++LY+G+N+          +       +  LT L 
Sbjct: 78  ELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAI-------RYLPPHVFQNVPLLTVLV 129

Query: 253 LHIKDVNTLPRGLF 266
           L   D+++LPRG+F
Sbjct: 130 LERNDLSSLPRGIF 143

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 46/379 (12%), Positives = 120/379 (31%), Gaps = 40/379 (10%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
               + V  ++ ++ ++  +     +   L  L L +  L D   + +   L  + L  +
Sbjct: 207 LAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264

Query: 178 NIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEG 236
            ++ +      ++ RL  L + + R L  +       +  L+ L + +N     E     
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNR-LVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ 322

Query: 237 VKN----------------ASLHELKHLT--SLELHIKDVNTLPRGLFFPKLQRYKIHIG 278
                              ++ H LK+LT    +     +  L R +  P +     H  
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCK 382

Query: 279 GYYYAGVWRRELKICPDSKIRLKD---------GLIVQLQGIEDLGLSKLPEQDVDYFVN 329
             Y           C +S     D          ++ ++Q  +    +      V    +
Sbjct: 383 IDY----QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSH 438

Query: 330 ELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLE 389
            + + G   L+         N   ++ ++ + + +Q  +++  ++       +      +
Sbjct: 439 YITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKD 498

Query: 390 NLELDSINVERIWQSHVAVMSCVSNNTFVRL----QRIEIKNCRVLEELIVVENQEERKN 445
            L   S N+ +++       +     T  R      + +       E + + +  + ++ 
Sbjct: 499 GLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRA 558

Query: 446 SIVIFPQLQYLKMDDLEKL 464
                 Q   LK   +++L
Sbjct: 559 KQAELRQETSLKRQKVKQL 577

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITV-VRDLKKLE 170
            I    F +M ++  + ++N  L++L      +  L+ L L +  LL +        +LE
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327

Query: 171 ILCLRGSNIKMLPIEV-SELARLRLLGLR-DCRELEVIPANVLSNLSHLEELY 221
            L L  ++I  L +     L  L L     DC  L  +  NV        + +
Sbjct: 328 NLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 18/209 (8%)

Query: 82  DIRTNLLPEVVES-----PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS 136
            +  N +  V  S      QL+LL + +    + LTI  + F  +  +R+++L +  +  
Sbjct: 30  LLSFNYIRTVTASSFPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGSSKIYF 87

Query: 137 LPSS-LGLLSNLRTLSLDNCKL----LDITVVRDLKKLEILCLRGSNIKMLPIEV--SEL 189
           L       L +L  L L  C L    L     R+LK L  L L  + I+ L +     +L
Sbjct: 88  LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 190 ARLRLLGLRDCRELEVIPANVLSNLS--HLEELYIGYNSFGKWEVEMEGVKNASLHELKH 247
             L+ +     + + ++  + L  L    L    +  NS         G        +  
Sbjct: 148 NSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-V 205

Query: 248 LTSLELHIKDVNTLPRGLFFPKLQRYKIH 276
           L  L++          G F   + + +  
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAF 234

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 56/379 (14%), Positives = 116/379 (30%), Gaps = 52/379 (13%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKML 182
           R+      NL  +P  L   +    L L    +  +  +    L++L++L L      + 
Sbjct: 7   RIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 183 --PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
                   L  LR+L L   + +  +  +    L HL EL + +            +K+ 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSD-----AVLKDG 117

Query: 241 SLHELKHLTSLELHIKDVNTLPRGLFFPKLQR-YKIHIGGYYYAGVWRRELKICPDSKIR 299
               LK LT L+L    + +L     F KL     I                     +I 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN----------------QIF 161

Query: 300 -LKDGLIVQLQGIE----DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAES 354
            + +  +  LQG       L  + L  +    +   +       L+ L +  +      +
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 355 KRREESTDVMQSHEIILKVNVNALFVEKVTLPKLEN---LELDSINVERIWQSHVAVMSC 411
                +    Q+  +IL  ++         +   +      L   +V  +          
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD--------- 272

Query: 412 VSNNTFVRLQRIEIKNCRVLEELIVVENQEER--KNSIVIFPQLQYLKMDDLEKLRNFCT 469
           +S+     L     +  + L+ L +  N+  +    +      LQ L +     L    +
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYS 331

Query: 470 GDVDILEFPSLKELIINRC 488
              +    P +  + + + 
Sbjct: 332 S--NFYGLPKVAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 40/189 (21%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVV-------- 163
            I ++ F+ + +++ ++L +  L ++      + ++  + L   KL+ +  +        
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 164 ---------------RDLKKLEILCLRGSNIKMLPIEV--SELARLRLLGLRDCR----E 202
                            +  L+IL L  +       +   SE   L  L L +       
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 203 LEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLP 262
              +  +V   LSHL+ LY+ +N           +       L  L  L L+   +  L 
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYL-------NSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 263 RGLFFPKLQ 271
                  L+
Sbjct: 521 HNDLPANLE 529

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 106 QESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDITVVR 164
           Q +    +    FE +  ++V+ L +  L SLP      L+ LR LSL++ +L  ++   
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

Query: 165 DLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224
               LEIL +  + +            L +L +   + +     +   N  +   + I  
Sbjct: 524 LPANLEILDISRNQLLAPN--PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG 581

Query: 225 NS 226
             
Sbjct: 582 PP 583

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 124 VRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDIT--VVRDLKKLEILCLRGSNIK 180
             +++L N ++  L       L +L  L L N K+  I       L+KL+ L +  +++ 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 181 MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA 240
            +P  +   + L  L + D R +  +P  V S L ++  + +G N      +E  G +  
Sbjct: 116 EIPPNL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-----LENSGFEPG 167

Query: 241 SLHELKHLTSLELHIKDVNTLPRGLFFPKLQ 271
           +   LK L  L +    +  +P+ L    L 
Sbjct: 168 AFDGLK-LNYLRISEAKLTGIPKDL-PETLN 196

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 15/144 (10%)

Query: 134 LMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLPIEV-SELA 190
           L  +P+   L   +  + L+   +  +        KKL  + L  + I  L  +    L 
Sbjct: 23  LTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80

Query: 191 RLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS 250
            L  L L   + +  +P ++   L  L+ L +  N       ++  ++  +  +L +L  
Sbjct: 81  SLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN-------KINCLRVDAFQDLHNLNL 132

Query: 251 LELHIKDVNTLPRGLF--FPKLQR 272
           L L+   + T+ +G F     +Q 
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQT 156

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGL---LSNLRTLSLDNCKL--LDITVVRDL 166
            IP   F    ++R I+L+N  +  L         L +L +L L   K+  L  ++   L
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGLRSLNSLVLYGNKITELPKSLFEGL 103

Query: 167 KKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
             L++L L  + I  L ++   +L  L LL L D + L+ I     S L  ++ +++  N
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162

Query: 226 SF 227
            F
Sbjct: 163 PF 164

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI--TVVRDLKKLEILCLRGSN-IKM 181
               +T  ++  +PS   L  + +TL L    L  I      +L  +  + +     ++ 
Sbjct: 14  EDFRVTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 182 LPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           L       L+++  + +R+ R L  I  + L  L  L+ L I   
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 16/167 (9%)

Query: 95  PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP--SSLGLLSNLRTLSL 152
            ++  + I   +  +   I     + +  ++ + + N  L   P  + +        L +
Sbjct: 80  SKVTHIEIRNTRNLTY--IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 153 -DNCKLLDI--TVVRDLKK-LEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA 208
            DN  +  I     + L      L L  +    +        +L  + L   + L VI  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 209 NVLSNL-SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
           +    + S    L +   S       +  + +  L  LK L +    
Sbjct: 198 DAFGGVYSGPSLLDVSQTS-------VTALPSKGLEHLKELIARNTW 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 17/135 (12%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
            + + ++  + L+   L ++ S++  L +++TL L + ++ D+T +  L  L++L L  +
Sbjct: 81  LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
            I  +   ++ L  L+ L + + + +  +    L+NLS L  L    N            
Sbjct: 140 QITNIS-PLAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDN------------ 183

Query: 238 KNASLHELKHLTSLE 252
           K + +  L  L +L 
Sbjct: 184 KISDISPLASLPNLI 198

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
              +  ++V+ L    + ++ S L  L+NL+ LS+ N ++ D+T + +L KL  L    +
Sbjct: 125 LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
            I  +   ++ L  L  + L++ + +  +    L+N S+L  + +   
Sbjct: 184 KISDIS-PLASLPNLIEVHLKNNQ-ISDVSP--LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 16/137 (11%)

Query: 128 NLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVS 187
           ++T    +++      L+N   ++     + D     DL  +  L   G+ +  +   V 
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQ 60

Query: 188 ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKH 247
            L  L  L L+D + +  +    L NL+ + EL +  N               ++  L+ 
Sbjct: 61  YLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS---------AIAGLQS 108

Query: 248 LTSLEL---HIKDVNTL 261
           + +L+L    I DV  L
Sbjct: 109 IKTLDLTSTQITDVTPL 125

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
              + ++  +   +  +  + S L  L NL  + L N ++ D++ + +   L I+ L   
Sbjct: 169 LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
            I   P+  +    L +  +        I    +S+        + +N 
Sbjct: 228 TITNQPVFYNNN--LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNL 274

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 21/209 (10%)

Query: 116 KFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLR 175
           +  + +  V  + L    L  +   L  L NL  L LD  K+ D++ ++DLKKL+ L L 
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 176 GSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
            + I  +   +  L +L  L L + + +  I    LS L+ L+ L +  N       ++ 
Sbjct: 121 HNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQI----SDIV 172

Query: 236 GVKNASLHELKHLTSLEL---HIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKI 292
            +       L  L +L L   HI D+  L        L   ++         +  +   +
Sbjct: 173 PLAG-----LTKLQNLYLSKNHISDLRALAG---LKNLDVLELFSQECLNKPINHQSNLV 224

Query: 293 CPDSKIRLKDGLIVQLQGIEDLGLSKLPE 321
            P++ ++  DG +V  + I D G  + P 
Sbjct: 225 VPNT-VKNTDGSLVTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 107 ESSSLTIPNK-----FFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDIT 161
            S ++T+P         +   +    NL   ++     +   L+++  +  +N  +  + 
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ 62

Query: 162 VVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY 221
            ++ L  +  L L G+ +  +   ++ L  L  L L + +  ++     L +L  L+ L 
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLS 118

Query: 222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLEL---HIKDVNTL 261
           + +N                L  L  L SL L    I D+  L
Sbjct: 119 LEHNGISDIN---------GLVHLPQLESLYLGNNKITDITVL 152

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 31/235 (13%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
            + +  V+  N  N N+ SL + +   +NL+ L L + ++ D++ ++DL KLE L +  +
Sbjct: 37  QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95

Query: 178 NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237
            +K   +     A L  L L +    +      L +L +LE L I  N            
Sbjct: 96  RLKN--LNGIPSACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIV------ 144

Query: 238 KNASLHELKHLTSLEL---HIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICP 294
               L  L  L  L+L    I +   L R     K+    +         V  +      
Sbjct: 145 ---MLGFLSKLEVLDLHGNEITNTGGLTR---LKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Query: 295 DSKIRLKDGLIVQLQGIEDLGLSKLPE---------QDVDYFVNELAKVGPSQLK 340
           +  ++  DG  +    I + G                +V Y  +E   VG ++  
Sbjct: 199 N-TVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAI 252

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 17/126 (13%)

Query: 139 SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR 198
            S   LS ++  + DN  +  +  ++    L+ L L  + I  L   + +L +L  L + 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVN 93

Query: 199 DCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH---I 255
             R L+ +    + +   L  L++  N               SL  LK+L  L +    +
Sbjct: 94  RNR-LKNLNG--IPSAC-LSRLFLDNNEL---------RDTDSLIHLKNLEILSIRNNKL 140

Query: 256 KDVNTL 261
           K +  L
Sbjct: 141 KSIVML 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 16/145 (11%)

Query: 134 LMSLPSSLGLLSNLRTLSLDNCKLLDIT---VVRDLKKLEILCLRGSNIKMLPIEV-SEL 189
           L  +P    +      L L+N +   +    + + L +L  +    + I  +        
Sbjct: 23  LNKIPE--HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 190 ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLT 249
           + +  + L     LE +   +   L  L+ L +  N        +  V N S   L  + 
Sbjct: 81  SGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSN-------RITCVGNDSFIGLSSVR 132

Query: 250 SLELHIKDVNTLPRGLF--FPKLQR 272
            L L+   + T+  G F     L  
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 23/117 (19%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI 171
            I    FE    V  I LT+  L ++                        + + L+ L+ 
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLENVQHK---------------------MFKGLESLKT 109

Query: 172 LCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
           L LR + I  +  +    L+ +RLL L D + +  +       L  L  L +  N F
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 130 TNINLMSLPSSLGLLSNLRTLSLDNCKLLDI---TVVRDLKKLEILCLRGSNIKMLPIEV 186
           T    +     L    NL  L ++N + L       +R L +L  L +  S ++ +  + 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 187 -SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227
                RL  L L     LE +    +  LS L+EL +  N  
Sbjct: 76  FHFTPRLSRLNLSFNA-LESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 7e-08
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 170 EILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229
            + C R   +  L   +     L  L + + + L+ +    L  L  L  L I  +    
Sbjct: 12  GLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---- 66

Query: 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFP 268
               +  V   + H    L+ L L    + +L       
Sbjct: 67  ---GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 20/121 (16%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 109 SSLTIPNKFFERMMQVRVINLTN--INLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDL 166
             L+   +   +M  ++ ++++   ++            +L +L++ +  L D       
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 167 KKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226
            ++++L L  + IK +P +V +L  L+ L +   + L+ +P  +   L+ L+++++  N 
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479

Query: 227 F 227
           +
Sbjct: 480 W 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 16/168 (9%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLDIT--VVRDLKK 168
              +  +E    + + N T      +       +S    L   N  L D        L +
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 169 LEILCLRGSNIKMLPIEVS---ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           LE L L+ + +K L        ++  L+ L +              S    L  L +  N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQR 272
                                 +  L+LH   + ++P+ +     LQ 
Sbjct: 410 IL---------TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 38/149 (25%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLP 183
           +++ +   L+ +P    L      L++    +  L  + +  L KL IL +  + I+ L 
Sbjct: 4   LVDRSKNGLIHVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 184 IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
                                    +V      LE L + +N               S H
Sbjct: 62  ------------------------ISVFKFNQELEYLDLSHNKL----------VKISCH 87

Query: 244 ELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
              +L  L+L     + LP    F  + +
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 23/122 (18%)

Query: 123 QVRVINLTNINLMSLPSSLG-----------------LLSNLRTLSLDNCKLLDITVVRD 165
            +  +  +  +L  LP                     L   L  L + N +L  +  +++
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 166 LKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
              L+I+ +  +++K LP        L  +   + + LE +P   L NL  L  +Y   N
Sbjct: 152 SSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNN 205

Query: 226 SF 227
           S 
Sbjct: 206 SL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 32/186 (17%), Positives = 69/186 (37%), Gaps = 27/186 (14%)

Query: 82  DIRTNLLPEVVES-PQLKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMSLPS 139
           D+  N L ++ +  P L+ +       ++ L  +P    + +  +  I   N +L  LP 
Sbjct: 159 DVDNNSLKKLPDLPPSLEFIAA----GNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD 212

Query: 140 SLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRD 199
                 +L ++   N  L ++  +++L  L  +    + +K LP     L  L +     
Sbjct: 213 LPL---SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY- 268

Query: 200 CRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN 259
              L  +P  +  +L+ L+     ++             +     L +L +    I+ + 
Sbjct: 269 ---LTDLP-ELPQSLTFLDVSENIFSGL-----------SELPPNLYYLNASSNEIRSLC 313

Query: 260 TLPRGL 265
            LP  L
Sbjct: 314 DLPPSL 319

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 21/137 (15%)

Query: 129 LTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSE 188
             + NL  +P     + +         +        + ++ E+   R        +    
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR--------LRDCL 69

Query: 189 LARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHL 248
             +   L L +   L  +P        HLE L    NS  +               LK L
Sbjct: 70  DRQAHELELNNLG-LSSLP----ELPPHLESLVASCNSLTELP--------ELPQSLKSL 116

Query: 249 TSLELHIKDVNTLPRGL 265
                ++K ++ LP  L
Sbjct: 117 LVDNNNLKALSDLPPLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 32/163 (19%)

Query: 115 NKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCL 174
           +   E    +  +N ++  + SL     L  +L  L++ N KL+++       +LE L  
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELP--ALPPRLERLIA 344

Query: 175 RGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA---------------NVLSNLSHLEE 219
             +++  +P        L+ L +     L   P                 V     +L++
Sbjct: 345 SFNHLAEVP---ELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400

Query: 220 LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLP 262
           L++  N   ++              ++ L      + D     
Sbjct: 401 LHVETNPLREFP--------DIPESVEDLRMNSERVVDPYEFA 435

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 24/118 (20%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI-----------------TVVRDLK 167
             +  +  +L  +P       NL+ L ++   L +                   V    +
Sbjct: 340 ERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 168 KLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
            L+ L +  + ++  P     +  LR+   R    +             LE+    ++
Sbjct: 397 NLKQLHVETNPLREFPDIPESVEDLRMNSER----VVDPYEFAHETTDKLEDDVFEHH 450

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 24/155 (15%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKML 182
              V+N+    L +LP  L   +++ TL + +  L  +       +L  L + G+ +  L
Sbjct: 41  GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSL 96

Query: 183 PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN--- 239
           P+    L  L +        L  +P+        L +L+I  N      V   G++    
Sbjct: 97  PVLPPGLLELSIFSNPLTH-LPALPSG-------LCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 240 ---------ASLHELKHLTSLELHIKDVNTLPRGL 265
                    A   EL  L +    +  +  LP GL
Sbjct: 149 SDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGL 183

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 35/160 (21%)

Query: 123 QVRVINLTNINLMSLPSSLG-----------------LLSNLRTLSLDNCKLLDITVVRD 165
           ++R + ++   L SLP                     L S L  L +   +L  +     
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP--VL 139

Query: 166 LKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
              L+ L +  + +  LP   SEL +L     +    L  +P       S L+EL +  N
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQ----LTSLPM----LPSGLQELSVSDN 191

Query: 226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL 265
                             EL  L +    +  +  LP GL
Sbjct: 192 QLASLP--------TLPSELYKLWAYNNRLTSLPALPSGL 223

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 10/138 (7%)

Query: 128 NLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVS 187
              N  L SLP+   L S L+ L +   +L  + V     +L+ L + G+ +  LP+  S
Sbjct: 207 WAYNNRLTSLPA---LPSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLTSLPMLPS 261

Query: 188 ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKH 247
            L  L    +   + L  +P + L +LS    + +  N   +  ++      ++      
Sbjct: 262 GLLSLS---VYRNQ-LTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316

Query: 248 LTSLELHIKDVNTLPRGL 265
           +   ++         R L
Sbjct: 317 IIRFDMAGASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 31/186 (16%)

Query: 76  TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLM 135
             + +   +   LP     P L+ L +  +Q +S   +P        ++  +   N  L 
Sbjct: 124 CKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS---LPALPS----ELCKLWAYNNQLT 174

Query: 136 SLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLL 195
           SLP        L+ LS+ + +L  +       +L  L    + +  LP   S L  L + 
Sbjct: 175 SLPMLPS---GLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPALPSGLKELIVS 229

Query: 196 GLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH---------ELK 246
           G R    L  +P       S L+EL +  N      +   G+ + S++          L 
Sbjct: 230 GNR----LTSLPV----LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLI 281

Query: 247 HLTSLE 252
           HL+S  
Sbjct: 282 HLSSET 287

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 12/129 (9%)

Query: 143 LLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRE 202
           L +    L++    L  +        +  L +  +N+  LP   +    LR L +   + 
Sbjct: 38  LNNGNAVLNVGESGLTTLP-DCLPAHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQ- 92

Query: 203 LEVIPANVLSNLSHLEELYIGYNSFGKW-----EVEMEGVKNASL-HELKHLTSLELHIK 256
           L  +P      L  L                  ++ + G +  SL      L  L +   
Sbjct: 93  LTSLPVL-PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151

Query: 257 DVNTLPRGL 265
            + +LP   
Sbjct: 152 QLASLPALP 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKM--- 181
             +++    L  LP SL  LS+  T++L+   L + T+    +        G  I+    
Sbjct: 264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMA 323

Query: 182 ---LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEEL 220
               P E   L       L   RE E  PA+        +  
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 86/542 (15%), Positives = 165/542 (30%), Gaps = 160/542 (29%)

Query: 47  STEQNVFSATNEQVEGYRE--WSDESAIKLYTSIV-----LHDIRTNLLPEVVESPQLK- 98
            TEQ   S         R+  ++D      Y   V        +R  LL       +L+ 
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALL-------ELRP 149

Query: 99  --LLFICADQES--SSLTIP---NKFFERMMQVRV--INLTNINLMSLPSSLGLLSNLRT 149
              + I     S  + + +    +   +  M  ++  +NL N N     S   +L  L+ 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-----SPETVLEMLQK 204

Query: 150 LSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLR-----------LLGLR 198
           L       +D                 SNIK L I  S  A LR           LL L 
Sbjct: 205 L----LYQID-------PNWTSRSDHSSNIK-LRIH-SIQAELRRLLKSKPYENCLLVLL 251

Query: 199 DCRELEVIPA-----NVL---SNLSHLEELYIGYNSFGKWEVEMEGVKNA-SLHELKHLT 249
           + +  +   A      +L         + L    ++     + ++      +  E+K L 
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFL----SAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 250 SLELHIKDVNTLPR----------GLFFPKLQRYKIHIGGYYYAGVWR--RELKICPDSK 297
              L  +    LPR           +    ++        + +    +    ++   +  
Sbjct: 308 LKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV- 365

Query: 298 IRLKDGLIVQLQGIEDLGL----SKLPEQ------------DVDYFVNELAKVGPSQLKH 341
             L+     ++   + L +    + +P              DV   VN+L K   S ++ 
Sbjct: 366 --LEPAEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVE- 418

Query: 342 LHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERI 401
                        K+ +EST  +    I L++ V            L    +D  N+ + 
Sbjct: 419 -------------KQPKEST--ISIPSIYLELKVKLE-----NEYALHRSIVDHYNIPKT 458

Query: 402 WQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDL 461
           + S   +   +    +  +    +KN              ER     +F  + +L    L
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGH-HLKNIE----------HPERMT---LFRMV-FLDFRFL 503

Query: 462 E-KLRN-----FCTGDV--DILEFPSLKELIINRCP----------EFLMRYKRTTNVLT 503
           E K+R+       +G +   + +    K  I +  P          +FL + +   N++ 
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE--ENLIC 561

Query: 504 EK 505
            K
Sbjct: 562 SK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 9e-08
 Identities = 77/446 (17%), Positives = 129/446 (28%), Gaps = 154/446 (34%)

Query: 5   RARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVA-------------ILIASTEQN 51
           + R+H++  +L+    LL     +  L     V+ +V              IL+ +  + 
Sbjct: 224 KLRIHSIQAELR---RLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 52  VFSATNEQVEGYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSL 111
           V    +                  T I L      L P+  E     LL    D     L
Sbjct: 277 VTDFLSAAT--------------TTHISLDHHSMTLTPD--EV--KSLLLKYLDCRPQDL 318

Query: 112 TIPNKFFERMMQVRVINLTNINLM--SLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKL 169
             P        +V   N   ++++  S+   L    N + +   NC  L   +   L  L
Sbjct: 319 --PR-------EVLTTNPRRLSIIAESIRDGLATWDNWKHV---NCDKLTTIIESSLNVL 366

Query: 170 EILCLRGSNIKMLPIEVSELARLRLLGLRDC-RELEV------IPANVLSNLSHLEELYI 222
           E            P E            R     L V      IP  +LS +        
Sbjct: 367 E------------PAE-----------YRKMFDRLSVFPPSAHIPTILLSLI-------- 395

Query: 223 GYNSFGKW------EVE--MEGVKNASL------------HEL------KHLTSLELHIK 256
                  W      +V   +  +   SL              +      K      LH  
Sbjct: 396 -------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 257 DVN--TLPR-----GLFFPKLQRYKI--HIGGYYYAGVWRREL-----KICPD-----SK 297
            V+   +P+      L  P L +Y    HIG ++   +   E       +  D      K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQY-FYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 298 IRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLH-IWNHPPNPAESKR 356
           IR           I +     L  Q + ++   +    P   + ++ I +  P   E+  
Sbjct: 507 IRHDSTAWNASGSILNT----L--QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 357 REESTDVMQSHEIILKVNVNALFVEK 382
             + TD+++   I L     A+F E 
Sbjct: 561 CSKYTDLLR---IALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 58/371 (15%), Positives = 111/371 (29%), Gaps = 114/371 (30%)

Query: 199 DCRELEVIPANVLSN------------LSHLEELYIGYNSFGKWEVE--MEGV--KN--- 239
           DC++++ +P ++LS             +S    L+    S  +  V+  +E V   N   
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 240 --ASLHELKHLTSL--ELHIKDVNTLPRGL-FFPKLQRYKIHIGGYYYAGVWRRELKICP 294
             + +   +   S+   ++I+  + L      F K               V R +  +  
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-------------VSRLQPYL-- 138

Query: 295 DSKIR-----LKDGLIVQLQG------------------IE----------DLGLSKLPE 321
             K+R     L+    V + G                  ++          +L     PE
Sbjct: 139 --KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 322 QDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVE 381
             ++     L ++ P+         H  N    K R  S        +  K   N L V 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSD---HSSNI---KLRIHSIQAELRRLLKSKPYENCLLV- 249

Query: 382 KVTLPKLENLELDSINVERIWQSHVAV-MSC----VSNNTFVRLQRIEIKNCRV-LEELI 435
                      L ++   + W    A  +SC     +    V           + L+   
Sbjct: 250 -----------LLNVQNAKAWN---AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 436 VVENQEERKNSIVIFPQLQYLKMDDLEKL-RNFCTGDVDILEFPSLKELIINRCPEFLMR 494
           +    +E K+   +   L+YL     + L R   T +      P    +I     + L  
Sbjct: 296 MTLTPDEVKS---LL--LKYLDC-RPQDLPREVLTTN------PRRLSIIAESIRDGLAT 343

Query: 495 YKRTTNVLTEK 505
           +    +V  +K
Sbjct: 344 WDNWKHVNCDK 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIE 185
            +        +   S   L+ L +L   N  + D+T +  L  L  L    +NI  L + 
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDL- 81

Query: 186 VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHEL 245
            S+   L  L     + L  +    ++ L+ L  L    N                + + 
Sbjct: 82  -SQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNKL----------TKLDVSQN 126

Query: 246 KHLTSLELH 254
             LT L   
Sbjct: 127 PLLTYLNCA 135

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 19/148 (12%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184
             +N     L  +   +   + L  L     K +    V    +L  L    + I  L +
Sbjct: 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV 187

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
             S+   L  L       +  +    L+    L  L    N                +  
Sbjct: 188 --SQNKLLNRLNCDTNN-ITKLD---LNQNIQLTFLDCSSNKL----------TEIDVTP 231

Query: 245 LKHLTSLELHIKDVNTLPRGLFFPKLQR 272
           L  LT  +  +  +  L       KL  
Sbjct: 232 LTQLTYFDCSVNPLTELDVST-LSKLTT 258

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 18/130 (13%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184
             +N     L  L   +     L  L+     L +I  V    +L  L    +       
Sbjct: 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL- 164

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
           +V+   +L  L     + +  +    +S    L  L    N+          +    L++
Sbjct: 165 DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRLNCDTNN----------ITKLDLNQ 210

Query: 245 LKHLTSLELH 254
              LT L+  
Sbjct: 211 NIQLTFLDCS 220

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 21/140 (15%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184
              + +   L  L  S   LS L TL      LL+I +  + + +         IK L +
Sbjct: 236 TYFDCSVNPLTELDVST--LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
             +   +L LL  +    +  +    LS    L  LY+                   +  
Sbjct: 294 --THNTQLYLLDCQAAG-ITELD---LSQNPKLVYLYLNNTEL----------TELDVSH 337

Query: 245 LKHLTSLEL---HIKDVNTL 261
              L SL     HI+D +++
Sbjct: 338 NTKLKSLSCVNAHIQDFSSV 357

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 30/226 (13%)

Query: 76  TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLM 135
            +  +          V+    L+ L +  + E +    P         + ++NL N++  
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTL-ENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 136 SLPSSLG-----LLSNLRTLSLDNCKLLDI--TVVRDLKKLEIL-----CLRGSNIKMLP 183
           +  + L      L   L+ LS+     L+     VR    L  L        G    +  
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 184 IEVSELARLRLLGLRDCR--ELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNAS 241
           +   +   L++L LR+        + + + +    L+ L + +NS             + 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 242 LHEL---------------KHLTSLELHIKDVNTLPRGLFFPKLQR 272
           L+ L                 L+ L+L    ++  P     P++  
Sbjct: 255 LNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGN 300

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 16/190 (8%)

Query: 96  QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINL--MSLPSSLGLL--SNLRTLS 151
            L+ L    D E+      +    + + ++ + +    +    L  +L +L  S L+ L+
Sbjct: 44  SLEYLLKRVDTEADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 152 LDNCKLLDIT----VVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCR----EL 203
           L+N ++        +      L IL LR  +       ++EL +    GL+         
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 204 EVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR 263
                  +     L  L +  N        +  +       L+ L      ++  + +  
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 264 GLF--FPKLQ 271
            L     +LQ
Sbjct: 222 ALAAARVQLQ 231

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 137 LPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLG 196
           + ++L  L   + L+L    +  I+ +  ++ L IL L  + IK +    +    L  L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99

Query: 197 LRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
           +   + +  +    +  L +L  LY+  N    W  E++      L  L  L  L L 
Sbjct: 100 ISYNQ-IASLSG--IEKLVNLRVLYMSNNKITNWG-EID-----KLAALDKLEDLLLA 148

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 116 KFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLR 175
              E+++ V  ++L++  L +LP +L  L  L  L   +  L ++  V +L +L+ L L 
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516

Query: 176 GSNIKMLP--IEVSELARLRLLGLRD--CRELEVIPANVLSNLSHLEEL 220
            + ++       +    RL LL L+     + E I   +   L  +  +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 8e-07
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 131 NINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELA 190
           +  L+         +++R L L +  L  +  +  L  +  L L  + ++ LP  ++ L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 191 RLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS 250
            L +L   D   LE +    ++NL  L+EL +  N   +            L     L  
Sbjct: 487 CLEVLQASDNA-LENVDG--VANLPRLQELLLCNNRLQQSAAIQP------LVSCPRLVL 537

Query: 251 LELH 254
           L L 
Sbjct: 538 LNLQ 541

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 25/186 (13%), Positives = 52/186 (27%), Gaps = 26/186 (13%)

Query: 111 LTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDNCKLLDI--TVVRDLK 167
           L      +    ++ +  L+  +   +        S+   L+       D        LK
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 168 KLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNL----SHLEELYIG 223
           +L+ L L+ + +K           +  L   D   L  + ++           +  L + 
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS-LNSLNSHAYDRTCAWAESILVLNLS 436

Query: 224 YNSFGKWEVEMEGVKN---------------ASLHELKHLTSLELHIKDVNTLPRGLF-- 266
            N      V                        +  L+ L  L +    + ++P G+F  
Sbjct: 437 SNMLTG-SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495

Query: 267 FPKLQR 272
              LQ 
Sbjct: 496 LTSLQY 501

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 11/149 (7%)

Query: 85  TNLLPEVVES-PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL-- 141
           T+ + +   +  +L+ L +  +   +              +  +   +++L SL S    
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKN---FFKVAL-MTKNMSSLETLDVSLNSLNSHAYD 421

Query: 142 ---GLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR 198
                  ++  L+L +  L          K+++L L  + I  +P +V+ L  L+ L + 
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVA 481

Query: 199 DCRELEVIPANVLSNLSHLEELYIGYNSF 227
             + L+ +P  V   L+ L+ +++  N +
Sbjct: 482 SNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 18/191 (9%)

Query: 85  TNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS----- 139
              L E+   P L  + +   + +   ++    F     V  +N+ N+ +          
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

Query: 140 -SLGLLSNLRTLSLDNCKLLDIT--VVRDLKKLEILCLRGSNIKMLPIEVSE-LARLRLL 195
            S   L +L    + N   L     +     ++ I  L  S+   + +      +    L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 196 GLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI 255
                           S L  L+ L +  N         +     +L   K+++SLE   
Sbjct: 359 NFTQNV-FTDSVFQGCSTLKRLQTLILQRNGL-------KNFFKVALM-TKNMSSLETLD 409

Query: 256 KDVNTLPRGLF 266
             +N+L    +
Sbjct: 410 VSLNSLNSHAY 420

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 52/421 (12%), Positives = 123/421 (29%), Gaps = 68/421 (16%)

Query: 85  TNLLPEVVES-PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGL 143
           + L    +    +L++L +  ++  S   +    F     +  +++++  L ++      
Sbjct: 65  SELRMPDISFLSELRVLRLSHNRIRS---LDFHVFLFNQDLEYLDVSHNRLQNISC--CP 119

Query: 144 LSNLRTLSLDNCKLLDIT---VVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDC 200
           +++LR L L       +       +L KL  L L  +  + L +    +A L L  +   
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP--VAHLHLSCI--- 174

Query: 201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT 260
                        L  L   +I                      + HL      +  V  
Sbjct: 175 -------------LLDLVSYHIKGGETESL--------QIPNTTVLHLVFHPNSLFSVQV 213

Query: 261 LPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLP 320
                    LQ   I +       +     ++     +              ++ L  + 
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL-------------NVTLQHIE 260

Query: 321 EQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNAL-F 379
                  V       P  +++L+I+N        +     ++      +I  V      F
Sbjct: 261 TTW-KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 380 VEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFV-----RLQRIEIKNCRVLEEL 434
            ++        + +  +++      H+      S+ TF+            + C  L+ L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 435 IVVENQEERKNSIV-------IFPQLQYLKMDDLEKLRNFCTGDVDILEF--PSLKELII 485
             +  Q   +N +        +   +  L+  D+  L +  +   D       S+  L +
Sbjct: 380 QTLILQ---RNGLKNFFKVALMTKNMSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNL 435

Query: 486 N 486
           +
Sbjct: 436 S 436

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 38/146 (26%)

Query: 127 INLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLPI 184
           ++ +N NL  +P    L    + LSL    +  L +  +  L +L +L L   N      
Sbjct: 36  VDYSNRNLTHVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRL-SHN------ 86

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
                             +  +  +V      LE L + +N            +N S   
Sbjct: 87  -----------------RIRSLDFHVFLFNQDLEYLDVSHNRL----------QNISCCP 119

Query: 245 LKHLTSLELHIKDVNTLPRGLFFPKL 270
           +  L  L+L   D + LP    F  L
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 144 LSNLRTLSLDNCKLLDITV---VRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDC 200
            S+++ L LDN +  +  +     + ++LE L      +  +   + +L +L+ L L D 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDN 74

Query: 201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
           R +      +     +L  L +  N        +E      L +L++L SL+L 
Sbjct: 75  R-VSGGLEVLAEKCPNLTHLNLSGNKIKDLS-TIE-----PLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNI-KMLP 183
            V++ +  N   L         L  LS  N  L  I  +  L KL+ L L  + +   L 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 184 IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           +   +   L  L L   +  ++     L  L +L+ L +   
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 27/137 (19%)

Query: 94  SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS--LPSSLGLLSNLRTLS 151
           + ++  L +          IP+     +  +  + +  IN +   +P ++  L+ L  L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 152 LDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELE-VIPANV 210
           + +                   + G+    +P  +S++  L  L       L   +P + 
Sbjct: 108 ITHTN-----------------VSGA----IPDFLSQIKTLVTLDFSYNA-LSGTLPPS- 144

Query: 211 LSNLSHLEELYIGYNSF 227
           +S+L +L  +    N  
Sbjct: 145 ISSLPNLVGITFDGNRI 161

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
              +  +  I   N ++ S+   +  L N+R L+L   KL DI+ +++L  L  L L G+
Sbjct: 37  QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN 95

Query: 178 NIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEG 236
            ++ LP  V  +L  L+ L L +  +L+ +P  V   L++L  L + +N         +G
Sbjct: 96  QLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP---KG 151

Query: 237 VKNASLHELKHLTSLELHIKDVNTLPRGLF 266
           V      +L +LT L+L    + +LP G+F
Sbjct: 152 V----FDKLTNLTELDLSYNQLQSLPEGVF 177

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 12/152 (7%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLR 175
            + +  VR + L    L  + + L  L+NL  L L   +L  L   V   L  L+ L L 
Sbjct: 59  IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117

Query: 176 GSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEM 234
            + ++ LP  V  +L  L  L L    +L+ +P  V   L++L EL + YN   + +   
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYN---QLQSLP 173

Query: 235 EGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
           EGV      +L  L  L L+   + ++P G+F
Sbjct: 174 EGV----FDKLTQLKDLRLYQNQLKSVPDGVF 201

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 129 LTNINLMSLPSS-LGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLPIE 185
           L +  L +L  +    L+ L  L+LD  +L  L   V  DL +L  L L  + +  LP+ 
Sbjct: 42  LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101

Query: 186 V-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE 244
           V   L +L  L L    +L+ +P+ V   L+ L+EL +  N       +++ +   +  +
Sbjct: 102 VFDHLTQLDKLYL-GGNQLKSLPSGVFDRLTKLKELRLNTN-------QLQSIPAGAFDK 153

Query: 245 LKHLTSLELHIKDVNTLPRGLF--FPKLQ 271
           L +L +L L    + ++P G F    KLQ
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 112 TIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLRTLSLDNCKL--LDITVVRDLKK 168
           T+    F+ + ++  + L N  L SLP  +   L+ L  L L   +L  L   V   L K
Sbjct: 73  TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 169 LEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           L+ L L  + ++ +P     +L  L+ L L    +L+ +P      L  L+ + +  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDIT-VVRDLKKLEILCLRGSNIKMLPI 184
           ++ LT   L+   +        R L L   K+  I  +   L + + +    + I+ L  
Sbjct: 1   MVKLTA-ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW-EVEMEGVKNASLH 243
               L RL+ L + + R +  I   +   L  L EL +  NS  +  +++        L 
Sbjct: 60  -FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLD-------PLA 110

Query: 244 ELKHLTSLELH 254
            LK LT L + 
Sbjct: 111 SLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS 177
           +   ++ R ++L    +  + +    L     +   + ++  +     L++L+ L +  +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 178 NIKML-PIEVSELARLRLLGLRDCR--ELEVIPANVLSNLSHLEELYIGYN 225
            I  +       L  L  L L +    EL  +  + L++L  L  L I  N
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDL--DPLASLKSLTYLCILRN 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 170 EILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229
             L L G+   ++P E+S    L L+ L +   +  +     SN++ L  L + YN    
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYN---- 88

Query: 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
               +  +   +   LK L  L LH  D++ +P G F
Sbjct: 89  ---RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 124 VRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKM 181
           V  + L       +P  L    +L  + L N ++  L      ++ +L  L L  + ++ 
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 182 LPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           +P      L  LRLL L    ++ V+P    ++LS L  L IG N
Sbjct: 93  IPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNI-KMLP 183
            V++    N   +        NL  LSL N  L+ ++ +  L KL+ L L  + I   L 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 184 IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
           +   +L  L  L L   +  ++     L  L  L+ L +           +   + +   
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV----TNLNDYRESVFK 144

Query: 244 ELKHLTSL 251
            L  LT L
Sbjct: 145 LLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 144 LSNLRTLSLDNCKLLDITV---VRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDC 200
            + +R L LDNCK  D  +     +   LE L L    +  +   + +L +L+ L L + 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSEN 81

Query: 201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
           R +      +   L +L  L +  N        +E      L +L+ L SL+L 
Sbjct: 82  R-IFGGLDMLAEKLPNLTHLNLSGNKLKDIS-TLE-----PLKKLECLKSLDLF 128

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 25/128 (19%)

Query: 119 ERMMQVRVINLTNINLMSLPSSLGLL-----------------SNLRTLSLDNCKLLDIT 161
           E    ++ +++ N  L  LP    LL                 ++L  LS+ N +L    
Sbjct: 117 ELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQL--TF 174

Query: 162 VVRDLKKLEILCLRGSNIKMLPIEVSELARLR----LLGLRDCRELEVIPANVLSNLSHL 217
           +    + LE L +  + ++ LP                  R+ R +  IP N + +L   
Sbjct: 175 LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPEN-ILSLDPT 232

Query: 218 EELYIGYN 225
             + +  N
Sbjct: 233 CTIILEDN 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 10/146 (6%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI-TVVRDLKKLE----ILCLRGSNI 179
            V+++ N  L  LP    L  +L  L +    L  +  V       E        R + I
Sbjct: 163 EVLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 180 KMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN 239
             +P  +  L     + L D   L       LS  +     Y G   +       +   +
Sbjct: 220 THIPENILSLDPTCTIILEDNP-LSSRIRESLSQQTAQ-PDYHGPRIYFSMSDGQQNTLH 277

Query: 240 ASLHELKHLTSLELHIKDVNTLPRGL 265
             L +       E    DV+ +    
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAF 303

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKML 182
            +  ++  +  L +LP       +L+ L +DN +L    +      LE +    + + ML
Sbjct: 101 SLEYLDACDNRLSTLPELPA---SLKHLDVDNNQL--TMLPELPALLEYINADNNQLTML 155

Query: 183 PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           P        L +L +R+ + L  +P         LE L +  N
Sbjct: 156 P---ELPTSLEVLSVRNNQ-LTFLP----ELPESLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 16/138 (11%)

Query: 95  PQLKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMSLPSSL--GLLSNLRTLS 151
           P      +  +   ++++     +F    +     L   N     S L   L++    L 
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ 65

Query: 152 LDNCKLLDITVVRD--LKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPAN 209
           L+   L   + + D    ++ +L +  + +  LP   + L  L     R    L  +P  
Sbjct: 66  LNRLNL---SSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNR----LSTLPE- 117

Query: 210 VLSNLSHLEELYIGYNSF 227
                + L+ L +  N  
Sbjct: 118 ---LPASLKHLDVDNNQL 132

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 38/155 (24%)

Query: 128 NLTNINLM-------SLPSSLGLLSNLRTLSLDNCKLLDI------TVVRDLKKLEILCL 174
           ++ ++++             L LL   + + LD+C L +       + +R    L  L L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 175 RGSNI---------KMLPIEVSELARLRL----LGLRDCRELEVIPANVLSNLSHLEELY 221
           R + +         + L     ++ +L L    L    C  L    ++ L  L  L+EL+
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL----SSTLRTLPTLQELH 119

Query: 222 IGYNSFGKWEVEMEGVK---NASLHELKHLTSLEL 253
           +  N  G       G++      L     L  L+L
Sbjct: 120 LSDNLLGD-----AGLQLLCEGLLDPQCRLEKLQL 149

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 99  LLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLL 158
            L+   D    +L            V         +    +       ++ + L N  + 
Sbjct: 47  SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106

Query: 159 D---ITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCREL-EVIPANVLSN 213
                 ++    KL+ L L G  +    +  +++ + L  L L  C    E     +LS+
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166

Query: 214 LSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL 253
            S L+EL + +      +   + V+ A  H  + +T L L
Sbjct: 167 CSRLDELNLSWCF----DFTEKHVQVAVAHVSETITQLNL 202

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 15/177 (8%)

Query: 88  LPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINL--TNINLMSLPSSLGLLS 145
           L   V    L    I      S +  P        +V+ ++L  + I + +L   L   S
Sbjct: 59  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118

Query: 146 NLRTLSLDNCKLLDITV--VRDLKKLEILCLRG----SNIKMLPIEVSELARLRLLGLRD 199
            L+ LSL+  +L D  V  +     L  L L G    S   +  + +S  +RL  L L  
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSW 177

Query: 200 CREL--EVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254
           C +   + +   V      + +L +         ++   +         +L  L+L 
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKN---LQKSDLSTLVRR-CPNLVHLDLS 230

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 13/161 (8%)

Query: 128 NLTNINLMSLPSSLGLLSNLRTLSLDNC-KLLDIT-------VVRDLKKLEILCLRGSNI 179
           ++TN +L S+ + L  L + R + LD   ++ D+        ++   KKL          
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448

Query: 180 KMLPIEVSELAR----LRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEME 235
            +  + +S + +    +R + L    E +           +L++L +    F +  +   
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508

Query: 236 GVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIH 276
             K  SL  L  +      +   + +     +  ++     
Sbjct: 509 VTKLPSLRYL-WVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 94  SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD 153
           +  L+     +  E   +           ++  + L+ +    +P      + +R L L 
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

Query: 154 NCKLLD---ITVVRDLKKLEILCLRGS-NIKMLPIEVSELARLRLLGLRDCRELEVIPAN 209
              L      T+++    LE+L  R     + L +      +L+ L +    + + +   
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361

Query: 210 -----------VLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHEL----KHLTSLEL 253
                      +      LE + +  +           + N SL  +    K+L    L
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVS----------DITNESLESIGTYLKNLCDFRL 410

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 134 LMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIKMLPIEV-SELA 190
             S+P+  G+ +    L L+   L  L   V  +L  L  L L G+ ++ LP  V ++L 
Sbjct: 19  RTSVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76

Query: 191 RLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS 250
            L  L L    +L+ +P  V   L+ L+EL +  N       +++ + +    +L  L  
Sbjct: 77  SLTYLNL-STNQLQSLPNGVFDKLTQLKELALNTN-------QLQSLPDGVFDKLTQLKD 128

Query: 251 LELHIKDVNTLPRGLF 266
           L L+   + ++P G+F
Sbjct: 129 LRLYQNQLKSVPDGVF 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	505
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.0
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.93
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.4
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	93.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.55
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	89.42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	83.89

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=4.9e-29  Score=253.53  Aligned_cols=343  Identities=18%  Similarity=0.256  Sum_probs=254.9

Q ss_pred             cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT  149 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  149 (505)
                      ..+++++++++.++.+..++....+++|++|++   .++.+..++.  +..+++|++|++++|.+..++. +..+++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~L---s~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCccCcchhhhcCCCEEEC---CCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence            456789999999999988888778999999999   5566667766  6889999999999999998877 899999999


Q ss_pred             eEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          150 LSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       150 L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      |++++|.+...+.++.+++|++|++++|.++.++ .+..+++|++|++.+  ....++.  ++.+++|++|++++|.+..
T Consensus       117 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCC
Confidence            9999999888545899999999999999888876 588899999999864  3334443  7889999999999888754


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ  309 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~  309 (505)
                      .         ..+..+++|+.|++++|.+..++....+++|+.|++..+.                  +.....+ ..++
T Consensus       192 ~---------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~------------------l~~~~~l-~~l~  243 (466)
T 1o6v_A          192 I---------SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ------------------LKDIGTL-ASLT  243 (466)
T ss_dssp             C---------GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC------------------CCCCGGG-GGCT
T ss_pred             C---------hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC------------------cccchhh-hcCC
Confidence            3         2377889999999999988776553348888888875321                  1111122 2367


Q ss_pred             ceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc-chhcchhhhhhhhcccccccccccccccc
Q 037920          310 GIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE-STDVMQSHEIILKVNVNALFVEKVTLPKL  388 (505)
Q Consensus       310 ~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L  388 (505)
                      +|+.|++++|   .+...+. +  ..+++|++|++++|.......+..+. ++.+++..+.+.+..      ....+++|
T Consensus       244 ~L~~L~l~~n---~l~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L  311 (466)
T 1o6v_A          244 NLTDLDLANN---QISNLAP-L--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PISNLKNL  311 (466)
T ss_dssp             TCSEEECCSS---CCCCCGG-G--TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG------GGGGCTTC
T ss_pred             CCCEEECCCC---ccccchh-h--hcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch------hhcCCCCC
Confidence            8888888887   3333333 3  66788888888888743333333333 445555555554422      13468899


Q ss_pred             ccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccc
Q 037920          389 ENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFC  468 (505)
Q Consensus       389 ~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~  468 (505)
                      +.|++++|++..+.+          +..+++|++|++++|. ++.+  +        ....+++|+.|++++|+ +..+.
T Consensus       312 ~~L~L~~n~l~~~~~----------~~~l~~L~~L~l~~n~-l~~~--~--------~l~~l~~L~~L~l~~n~-l~~~~  369 (466)
T 1o6v_A          312 TYLTLYFNNISDISP----------VSSLTKLQRLFFYNNK-VSDV--S--------SLANLTNINWLSAGHNQ-ISDLT  369 (466)
T ss_dssp             SEEECCSSCCSCCGG----------GGGCTTCCEEECCSSC-CCCC--G--------GGTTCTTCCEEECCSSC-CCBCG
T ss_pred             CEEECcCCcCCCchh----------hccCccCCEeECCCCc-cCCc--h--------hhccCCCCCEEeCCCCc-cCccc
Confidence            999999998877644          6788999999999985 6654  1        13466999999999886 44443


Q ss_pred             cCCcccccCCCccceecccCc
Q 037920          469 TGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       469 ~~~~~~~~~~~L~~L~i~~C~  489 (505)
                      .    +..+++|+.|++++|+
T Consensus       370 ~----~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          370 P----LANLTRITQLGLNDQA  386 (466)
T ss_dssp             G----GTTCTTCCEEECCCEE
T ss_pred             h----hhcCCCCCEEeccCCc
Confidence            3    6788999999999983

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=5.6e-29  Score=262.27  Aligned_cols=336  Identities=19%  Similarity=0.263  Sum_probs=231.3

Q ss_pred             ccChhHHhCCCCccEEEEeCCcCcc------------------Cccccc--CCCCCCeeEeeccCCCC--cccccCCCCC
Q 037920          112 TIPNKFFERMMQVRVINLTNINLMS------------------LPSSLG--LLSNLRTLSLDNCKLLD--ITVVRDLKKL  169 (505)
Q Consensus       112 ~~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~l~--~l~~L~~L~L~~~~l~~--~~~i~~l~~L  169 (505)
                      .+|.. +.++++|++|++++|.++.                  +|..++  ++++|++|++++|.+.+  |..++++++|
T Consensus       197 ~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             cCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            36666 5889999999999999998                  999999  99999999999999777  7899999999


Q ss_pred             cEEEccCCC-Ccc--cchhhhCC------CCCCEEeeeCCCCCCccCh--hhhcCCCCccEEEeeCCCCCCchhhhhccc
Q 037920          170 EILCLRGSN-IKM--LPIEVSEL------ARLRLLGLRDCRELEVIPA--NVLSNLSHLEELYIGYNSFGKWEVEMEGVK  238 (505)
Q Consensus       170 ~~L~l~~~~-l~~--lp~~i~~l------~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  238 (505)
                      ++|++++|+ ++.  +|..++++      ++|++|++++| .+..+|.  . ++.+++|++|++++|.+       .|.+
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l-------~g~i  346 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQL-------EGKL  346 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCC-------EEEC
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcC-------ccch
Confidence            999999998 884  88888887      99999999995 5558887  5 89999999999999988       5667


Q ss_pred             cccccCCCCcCEEEeecccCCCCCCCCC-CCC-CcEEEEEEcceeec-c----c---ccceEEecCCCCcc-chhhHHH-
Q 037920          239 NASLHELKHLTSLELHIKDVNTLPRGLF-FPK-LQRYKIHIGGYYYA-G----V---WRRELKICPDSKIR-LKDGLIV-  306 (505)
Q Consensus       239 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~-L~~L~~~~~~~~~~-~----~---~~~~l~l~~~~~~~-~~~~~~~-  306 (505)
                      | .+..+++|+.|++++|.+..+|..+. +++ |+.|++..+....- .    .   .-..+.+..+.-.. .+..+.. 
T Consensus       347 p-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          347 P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             C-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             h-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            7 78888888888888888888877765 677 88888765432200 0    0   00113332211110 0111110 


Q ss_pred             -----HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC--Cccccccc--------cchhcchhhhhhh
Q 037920          307 -----QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN--PAESKRRE--------ESTDVMQSHEIIL  371 (505)
Q Consensus       307 -----~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~--~~~~l~~L--------~l~~l~~~~~~~~  371 (505)
                           .+++|+.|++++|   .+..+|..+. ..+++|++|++++|...  +...+..+        .++.++++.+.+.
T Consensus       426 ~~~~~~~~~L~~L~Ls~N---~l~~lp~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNN---QISKFPKELF-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             CSSCCCCCCEEEEECCSS---CCCSCCTHHH-HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             ccccccCCCCCEEECcCC---ccCcCCHHHH-ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence                 1457888888877   3445665542 45778888888887732  22222222        3445555555555


Q ss_pred             hccccccccccc--cccccccccccccccccccccceeeccCccccccccccEEEEcccc------ccccceeccccccc
Q 037920          372 KVNVNALFVEKV--TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR------VLEELIVVENQEER  443 (505)
Q Consensus       372 ~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~------~l~~i~~~~~~~~~  443 (505)
                      ..     .....  .+++|+.|++++|++..++..         +..+++|++|++++|.      ....+  +.     
T Consensus       502 ~l-----p~~~~~~~l~~L~~L~Ls~N~l~~ip~~---------~~~l~~L~~L~Ls~N~~ls~N~l~~~~--p~-----  560 (636)
T 4eco_A          502 KL-----SDDFRATTLPYLVGIDLSYNSFSKFPTQ---------PLNSSTLKGFGIRNQRDAQGNRTLREW--PE-----  560 (636)
T ss_dssp             BC-----CGGGSTTTCTTCCEEECCSSCCSSCCCG---------GGGCSSCCEEECCSCBCTTCCBCCCCC--CT-----
T ss_pred             cc-----ChhhhhccCCCcCEEECCCCCCCCcChh---------hhcCCCCCEEECCCCcccccCcccccC--hH-----
Confidence            21     11112  577888888888877765443         6678888888886543      12222  22     


Q ss_pred             ccccccccccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920          444 KNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF  491 (505)
Q Consensus       444 ~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L  491 (505)
                        ....+++|++|+++++.- ..++.   .+  +++|+.|++++||-.
T Consensus       561 --~l~~l~~L~~L~Ls~N~l-~~ip~---~~--~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          561 --GITLCPSLTQLQIGSNDI-RKVNE---KI--TPNISVLDIKDNPNI  600 (636)
T ss_dssp             --TGGGCSSCCEEECCSSCC-CBCCS---CC--CTTCCEEECCSCTTC
T ss_pred             --HHhcCCCCCEEECCCCcC-CccCH---hH--hCcCCEEECcCCCCc
Confidence              234568888888888873 55543   22  388999999998544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=253.75  Aligned_cols=161  Identities=21%  Similarity=0.218  Sum_probs=125.5

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-  138 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-  138 (505)
                      ++..++. ..++.+++|++++|.+..++.  ...+++|++|++   .++.+..++...|.++++|++|++++|.++.++ 
T Consensus        18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEEC---CCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence            4555554 456789999999999977764  348999999999   555677777777789999999999999998865 


Q ss_pred             ccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccChhhhcCC
Q 037920          139 SSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIPANVLSNL  214 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l  214 (505)
                      ..+..+++|++|++++|.+.. + ..++.+++|++|++++|.++.  +|..++++++|++|++++| .+..++...++.+
T Consensus        94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l  172 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVL  172 (570)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHH
T ss_pred             hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccch
Confidence            678999999999999999888 3 468999999999999998885  6888999999999999984 4455543334444


Q ss_pred             CCc----cEEEeeCCCC
Q 037920          215 SHL----EELYIGYNSF  227 (505)
Q Consensus       215 ~~L----~~L~l~~~~~  227 (505)
                      ++|    +.+++++|.+
T Consensus       173 ~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             HTCTTCCCEEECTTCCC
T ss_pred             hccchhhhhcccCCCCc
Confidence            444    5555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=7.9e-28  Score=235.15  Aligned_cols=307  Identities=17%  Similarity=0.223  Sum_probs=228.6

Q ss_pred             CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920           67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN  146 (505)
Q Consensus        67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~  146 (505)
                      .....++++++++++++.+..++....+++|++|++   .++.+..++.  +..+++|++|++++|.++.++ .+..+++
T Consensus        38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l---~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~  111 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNL---NGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTN  111 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred             ccchhcccccEEEEeCCccccchhhhhcCCccEEEc---cCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence            344578889999999999888887778889999999   5556666666  678899999999998888875 5888888


Q ss_pred             CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCC
Q 037920          147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS  226 (505)
Q Consensus       147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  226 (505)
                      |++|++++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++| .+..++.  +..+++|++|++++|.
T Consensus       112 L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          112 LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             CSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             CCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCc
Confidence            999999888888844488888899999888844433345888888888888884 4455554  6788888888888887


Q ss_pred             CCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHH
Q 037920          227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIV  306 (505)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~  306 (505)
                      +....        . +..+++|+.|++++|.+..++..                                         .
T Consensus       189 l~~~~--------~-~~~l~~L~~L~l~~n~l~~~~~~-----------------------------------------~  218 (347)
T 4fmz_A          189 IEDIS--------P-LASLTSLHYFTAYVNQITDITPV-----------------------------------------A  218 (347)
T ss_dssp             CCCCG--------G-GGGCTTCCEEECCSSCCCCCGGG-----------------------------------------G
T ss_pred             ccccc--------c-ccCCCccceeecccCCCCCCchh-----------------------------------------h
Confidence            75432        1 67788888888888776543321                                         1


Q ss_pred             HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccc
Q 037920          307 QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLP  386 (505)
Q Consensus       307 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~  386 (505)
                      .+++|+.|++++|   .+..++. +  ..+++|++|++++|....                           +.....++
T Consensus       219 ~~~~L~~L~l~~n---~l~~~~~-~--~~l~~L~~L~l~~n~l~~---------------------------~~~~~~l~  265 (347)
T 4fmz_A          219 NMTRLNSLKIGNN---KITDLSP-L--ANLSQLTWLEIGTNQISD---------------------------INAVKDLT  265 (347)
T ss_dssp             GCTTCCEEECCSS---CCCCCGG-G--TTCTTCCEEECCSSCCCC---------------------------CGGGTTCT
T ss_pred             cCCcCCEEEccCC---ccCCCcc-h--hcCCCCCEEECCCCccCC---------------------------ChhHhcCC
Confidence            2678888888887   3444444 4  678999999999886211                           11223688


Q ss_pred             ccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccc
Q 037920          387 KLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRN  466 (505)
Q Consensus       387 ~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~  466 (505)
                      +|+.|++++|++..++.          +..+++|++|++++|. ++... +.       ....+++|+.|++++|+ +..
T Consensus       266 ~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~L~~n~-l~~~~-~~-------~l~~l~~L~~L~L~~n~-l~~  325 (347)
T 4fmz_A          266 KLKMLNVGSNQISDISV----------LNNLSQLNSLFLNNNQ-LGNED-ME-------VIGGLTNLTTLFLSQNH-ITD  325 (347)
T ss_dssp             TCCEEECCSSCCCCCGG----------GGGCTTCSEEECCSSC-CCGGG-HH-------HHHTCTTCSEEECCSSS-CCC
T ss_pred             CcCEEEccCCccCCChh----------hcCCCCCCEEECcCCc-CCCcC-hh-------HhhccccCCEEEccCCc-ccc
Confidence            99999999998877643          7788999999999996 54432 11       13456999999999997 555


Q ss_pred             cccCCcccccCCCccceecccCc
Q 037920          467 FCTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       467 ~~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                      +..    +..+++|+.|++++|+
T Consensus       326 ~~~----~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          326 IRP----LASLSKMDSADFANQV  344 (347)
T ss_dssp             CGG----GGGCTTCSEESSSCC-
T ss_pred             ccC----hhhhhccceeehhhhc
Confidence            443    6779999999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=1.1e-27  Score=251.91  Aligned_cols=404  Identities=15%  Similarity=0.167  Sum_probs=249.8

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P  138 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~  138 (505)
                      ++..++. ..++.+++|++++|.+..++.  ...+++|++|++   .++.+..+++..|.++++|++|++++|.++.+ |
T Consensus        23 ~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           23 GLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL---TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             CCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred             CcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEEC---CCCccceeChhhccCccccCeeeCCCCcccccCh
Confidence            3444443 356789999999999977753  348999999999   55555566555578999999999999998874 6


Q ss_pred             ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920          139 SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLS  215 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  215 (505)
                      ..++.+++|++|++++|.+..  +..++.+++|++|++++|.++.++ +.+..+++|++|++++ +.+..++...++.++
T Consensus        99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~  177 (606)
T 3t6q_A           99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQ  177 (606)
T ss_dssp             TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTT
T ss_pred             hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhc
Confidence            788999999999999999888  578889999999999999888762 3455589999999988 455666555578888


Q ss_pred             Ccc--EEEeeCCCCCCchhhh-----------------------------------------------------------
Q 037920          216 HLE--ELYIGYNSFGKWEVEM-----------------------------------------------------------  234 (505)
Q Consensus       216 ~L~--~L~l~~~~~~~~~~~~-----------------------------------------------------------  234 (505)
                      +|+  .|++++|.+.......                                                           
T Consensus       178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~  257 (606)
T 3t6q_A          178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE  257 (606)
T ss_dssp             TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred             ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence            888  7888877665432100                                                           


Q ss_pred             ---------hccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEcceeeccc-------ccceEEecCCCC
Q 037920          235 ---------EGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYYYAGV-------WRRELKICPDSK  297 (505)
Q Consensus       235 ---------~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~~~~~-------~~~~l~l~~~~~  297 (505)
                               .+..+..+..+++|+.|++++|.+..+|..+. +++|+.|++..+.......       .-..+.+..+..
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence                     01112336677888888888888888877765 7788887775432111000       000133332111


Q ss_pred             c-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC--CCcccccccc-chhcchhhhhhhhc
Q 037920          298 I-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP--NPAESKRREE-STDVMQSHEIILKV  373 (505)
Q Consensus       298 ~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~--~~~~~l~~L~-l~~l~~~~~~~~~~  373 (505)
                      . ..+......+++|+.|++++|........+..+  ..+++|++|++++|..  .....+..+. ++.+++..+.+.+.
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            1 111111222556666666665111111113333  5566666666666651  1111222222 33444444444332


Q ss_pred             cccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccccccccccccc
Q 037920          374 NVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQL  453 (505)
Q Consensus       374 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L  453 (505)
                      .....   ...+++|+.|++++|.+....+..        +..+++|++|++++|. ++....+..     .....+++|
T Consensus       416 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~~~~l~~L  478 (606)
T 3t6q_A          416 DAQSP---FQNLHLLKVLNLSHSLLDISSEQL--------FDGLPALQHLNLQGNH-FPKGNIQKT-----NSLQTLGRL  478 (606)
T ss_dssp             TTCCT---TTTCTTCCEEECTTCCCBTTCTTT--------TTTCTTCCEEECTTCB-CGGGEECSS-----CGGGGCTTC
T ss_pred             ccchh---hhCcccCCEEECCCCccCCcCHHH--------HhCCCCCCEEECCCCC-CCccccccc-----hhhccCCCc
Confidence            11111   124667777777777655442211        5667888888888886 433211110     123456888


Q ss_pred             ccccccCcccccccccCCcccccCCCccceecccCcccee
Q 037920          454 QYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLM  493 (505)
Q Consensus       454 ~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~  493 (505)
                      +.|++++|. +..+.  |..+..+++|+.|++++| ++..
T Consensus       479 ~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~  514 (606)
T 3t6q_A          479 EILVLSFCD-LSSID--QHAFTSLKMMNHVDLSHN-RLTS  514 (606)
T ss_dssp             CEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCG
T ss_pred             cEEECCCCc-cCccC--hhhhccccCCCEEECCCC-ccCc
Confidence            999988885 44432  234677899999999988 3443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=1.5e-27  Score=250.90  Aligned_cols=140  Identities=21%  Similarity=0.190  Sum_probs=117.1

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P  138 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~  138 (505)
                      +++.++. ...+++++|++++|.+..++.  ..++++|++|++   .++.+..+++..|.++++|++|++++|.++.+ |
T Consensus        22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p   97 (606)
T 3vq2_A           22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL---SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP   97 (606)
T ss_dssp             CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred             CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeC---CCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence            4555554 356889999999999987765  349999999999   55666677666678999999999999999986 7


Q ss_pred             ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc--ccchhhhCCCCCCEEeeeCCCCCCcc
Q 037920          139 SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK--MLPIEVSELARLRLLGLRDCRELEVI  206 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~  206 (505)
                      ..++++++|++|++++|.+..  +..++++++|++|++++|.++  .+|..++++++|++|++++| .+..+
T Consensus        98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~  168 (606)
T 3vq2_A           98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTI  168 (606)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEE
T ss_pred             hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceec
Confidence            789999999999999999888  378999999999999999987  46889999999999999985 33433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.4e-28  Score=257.49  Aligned_cols=362  Identities=11%  Similarity=0.157  Sum_probs=263.1

Q ss_pred             CCCCC-CCCCccEEEeeecCCCCccc-----------------cChhHHh--CCCCccEEEEeCCcCcc-CcccccCCCC
Q 037920           88 LPEVV-ESPQLKLLFICADQESSSLT-----------------IPNKFFE--RMMQVRVINLTNINLMS-LPSSLGLLSN  146 (505)
Q Consensus        88 l~~~~-~~~~L~~L~l~~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~-l~~~l~~l~~  146 (505)
                      +|... ++++|++|++  .++...+.                 +|..+ .  ++++|++|++++|.+.. +|..++++++
T Consensus       198 ip~~l~~l~~L~~L~L--s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYM--GNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             ECGGGGGCTTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             CCHHHhcccCCCEEEC--cCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            55433 8999999999  44443332                 78775 5  89999999999999775 8999999999


Q ss_pred             CCeeEeeccC-CCC---cccccCC------CCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccChhhhcCC
Q 037920          147 LRTLSLDNCK-LLD---ITVVRDL------KKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANVLSNL  214 (505)
Q Consensus       147 L~~L~L~~~~-l~~---~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l  214 (505)
                      |++|++++|. +++   |..++.+      ++|++|++++|+++.+|.  .++++++|++|++++|...+.+| . ++.+
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l  352 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSE  352 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEE
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCC
Confidence            9999999998 874   6777776      999999999999999998  89999999999999965444888 4 8999


Q ss_pred             CCccEEEeeCCCCCCchhhhhccccccccCCCC-cCEEEeecccCCCCCCCCC---CCCCcEEEEEEcceeec-------
Q 037920          215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKH-LTSLELHIKDVNTLPRGLF---FPKLQRYKIHIGGYYYA-------  283 (505)
Q Consensus       215 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~~---~~~L~~L~~~~~~~~~~-------  283 (505)
                      ++|++|++++|.+       . .+|..+..+++ |+.|++++|.+..+|..+.   +++|+.|+++.+.....       
T Consensus       353 ~~L~~L~L~~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          353 IKLASLNLAYNQI-------T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             EEESEEECCSSEE-------E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             CCCCEEECCCCcc-------c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            9999999999986       3 56778999999 9999999999999998765   34788888765532110       


Q ss_pred             -------ccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhcc------CCCCccEEEEeCCCCC
Q 037920          284 -------GVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKV------GPSQLKHLHIWNHPPN  350 (505)
Q Consensus       284 -------~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~------~l~~L~~L~l~~~~~~  350 (505)
                             ...-..+.+..+.-...+..+...+++|+.|++++|   .+..+|......      .+++|+.|++++|.-.
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN---MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS---CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC---CCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence                   001112555554444566666666899999999998   444777655321      1239999999999843


Q ss_pred             Ccc-ccc--ccc-chhcchhhhhhhhccccccccccccccccccccccc------cccc-cccccceeeccCcccccccc
Q 037920          351 PAE-SKR--REE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS------INVE-RIWQSHVAVMSCVSNNTFVR  419 (505)
Q Consensus       351 ~~~-~l~--~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~-~~~~~~~~v~~c~~l~~l~~  419 (505)
                      ..+ .+.  .+. ++.++++.+.+.+.     ......+++|+.|++++      |++. .++..         +..+++
T Consensus       502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~---------l~~l~~  567 (636)
T 4eco_A          502 KLSDDFRATTLPYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG---------ITLCPS  567 (636)
T ss_dssp             BCCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT---------GGGCSS
T ss_pred             ccChhhhhccCCCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCcccccChHH---------HhcCCC
Confidence            222 121  332 55677777777662     12234689999999965      4333 33222         788999


Q ss_pred             ccEEEEccccccccceecccccccccccccccccccccccCcccccccccC------CcccccCCCccceecccCccce
Q 037920          420 LQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTG------DVDILEFPSLKELIINRCPEFL  492 (505)
Q Consensus       420 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~------~~~~~~~~~L~~L~i~~C~~L~  492 (505)
                      |++|++++|. ++.+  +...         +++|+.|++++++-. .+...      ......+...+..+|++||.|.
T Consensus       568 L~~L~Ls~N~-l~~i--p~~~---------~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~  633 (636)
T 4eco_A          568 LTQLQIGSND-IRKV--NEKI---------TPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD  633 (636)
T ss_dssp             CCEEECCSSC-CCBC--CSCC---------CTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred             CCEEECCCCc-CCcc--CHhH---------hCcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence            9999999998 5766  3322         389999999999733 22210      0112234455778999999885

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=3.3e-28  Score=262.21  Aligned_cols=85  Identities=7%  Similarity=0.002  Sum_probs=57.5

Q ss_pred             cccccccccccccccccc-cccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          384 TLPKLENLELDSINVERI-WQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       384 ~~~~L~~L~l~~~~l~~~-~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      .+++|+.|++++|++... +..         ++.+++|+.|++++|.--..+  +...       ..+++|+.|+++++.
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~---------l~~l~~L~~L~Ls~N~l~g~i--p~~l-------~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKE---------IGSMPYLFILNLGHNDISGSI--PDEV-------GDLRGLNILDLSSNK  691 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGG---------GGGCTTCCEEECCSSCCCSCC--CGGG-------GGCTTCCEEECCSSC
T ss_pred             ccccccEEECcCCcccccCCHH---------HhccccCCEEeCcCCccCCCC--ChHH-------hCCCCCCEEECCCCc
Confidence            356778888888866633 221         677888888888888633344  3333       345888888888887


Q ss_pred             cccccccCCcccccCCCccceecccCc
Q 037920          463 KLRNFCTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       463 ~L~~~~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                      --..++   ..+..+++|+.|++++++
T Consensus       692 l~g~ip---~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          692 LDGRIP---QAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CEECCC---GGGGGCCCCSEEECCSSE
T ss_pred             ccCcCC---hHHhCCCCCCEEECcCCc
Confidence            444443   357778888888888873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=2e-27  Score=246.95  Aligned_cols=395  Identities=16%  Similarity=0.164  Sum_probs=251.4

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS  139 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  139 (505)
                      +++.++. ...+++++|++++|.+..++.  ...+++|++|++   .++.+..+++..|.++++|++|++++|.++.+++
T Consensus        16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL---KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEEC---CCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence            4555554 345789999999999977643  349999999999   5666667776667899999999999999999776


Q ss_pred             c-ccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCC-Ccccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcC
Q 037920          140 S-LGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSN-IKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSN  213 (505)
Q Consensus       140 ~-l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~  213 (505)
                      . ++.+++|++|++++|.+..   +..++.+++|++|++++|. +..+| ..+.++++|++|++++|...+..|.. ++.
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~  170 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKS  170 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTT
T ss_pred             HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhc
Confidence            4 9999999999999999875   5789999999999999997 67776 57899999999999996554445655 899


Q ss_pred             CCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCC---CCC--CCCCCcEEEEEEcceeec-----
Q 037920          214 LSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLP---RGL--FFPKLQRYKIHIGGYYYA-----  283 (505)
Q Consensus       214 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~---~~~--~~~~L~~L~~~~~~~~~~-----  283 (505)
                      +++|++|++++|.+...+.       ..+..+++|+.|++++|.+..++   ...  .+++|+.|++..+.....     
T Consensus       171 l~~L~~L~l~~n~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          171 IRDIHHLTLHLSESAFLLE-------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             CSEEEEEEEECSBSTTHHH-------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             cccCceEecccCcccccch-------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            9999999999887644322       22356899999999999887642   221  156666666543321100     


Q ss_pred             ---------------------cc--------------------------------------------ccceEEecCCCCc
Q 037920          284 ---------------------GV--------------------------------------------WRRELKICPDSKI  298 (505)
Q Consensus       284 ---------------------~~--------------------------------------------~~~~l~l~~~~~~  298 (505)
                                           +.                                            .-..+.+......
T Consensus       244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~  323 (549)
T 2z81_A          244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF  323 (549)
T ss_dssp             HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred             HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence                                 00                                            0000222222222


Q ss_pred             cchhhHHHHhcceeEEeecCCCCCCcchhhhhh-hccCCCCccEEEEeCCCCCCcc----cccccc-chhcchhhhhhhh
Q 037920          299 RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL-AKVGPSQLKHLHIWNHPPNPAE----SKRREE-STDVMQSHEIILK  372 (505)
Q Consensus       299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~l~~L~~L~l~~~~~~~~~----~l~~L~-l~~l~~~~~~~~~  372 (505)
                      ..+.++...+++|+.|++++|  .....+|... ....+++|++|++++|.-....    .+..+. ++.++++.+.+.+
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  401 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP  401 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC
T ss_pred             cCCHHHHhcCccccEEEccCC--ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc
Confidence            233444444677777777776  3333333221 1155677777777777632211    122222 3345555554442


Q ss_pred             ccccccccccccccccccccccccccccccccc------eeeccCcc---ccccccccEEEEccccccccceeccccccc
Q 037920          373 VNVNALFVEKVTLPKLENLELDSINVERIWQSH------VAVMSCVS---NNTFVRLQRIEIKNCRVLEELIVVENQEER  443 (505)
Q Consensus       373 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~------~~v~~c~~---l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~  443 (505)
                      .     ......+++|++|++++|+++.++...      +.++.|.-   ...+++|++|++++|. ++.+  +.     
T Consensus       402 l-----p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~i--p~-----  468 (549)
T 2z81_A          402 M-----PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTL--PD-----  468 (549)
T ss_dssp             C-----CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSC--CC-----
T ss_pred             C-----ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcC--CC-----
Confidence            1     111234566666666666555443211      01111110   2356677777777764 5544  22     


Q ss_pred             ccccccccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920          444 KNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       444 ~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                         ...+++|+.|+++++. ++.+..  ..+..+++|+.|+++++|
T Consensus       469 ---~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          469 ---ASLFPVLLVMKISRNQ-LKSVPD--GIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             ---GGGCTTCCEEECCSSC-CCCCCT--TGGGGCTTCCEEECCSSC
T ss_pred             ---cccCccCCEEecCCCc-cCCcCH--HHHhcCcccCEEEecCCC
Confidence               1235777888887774 444322  235677888888887775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.5e-27  Score=255.98  Aligned_cols=334  Identities=19%  Similarity=0.224  Sum_probs=236.7

Q ss_pred             cChhHHhCCCCccEEEEeCCcCcc------------------Cccccc--CCCCCCeeEeeccCCCC--cccccCCCCCc
Q 037920          113 IPNKFFERMMQVRVINLTNINLMS------------------LPSSLG--LLSNLRTLSLDNCKLLD--ITVVRDLKKLE  170 (505)
Q Consensus       113 ~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~l~--~l~~L~~L~L~~~~l~~--~~~i~~l~~L~  170 (505)
                      +|.. +.++++|++|++++|.++.                  +|+.++  ++++|++|++++|.+.+  |..++++++|+
T Consensus       440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            6666 5889999999999999998                  999988  99999999999999766  78899999999


Q ss_pred             EEEccCCC-Ccc--cchhhhCCC-------CCCEEeeeCCCCCCccCh--hhhcCCCCccEEEeeCCCCCCchhhhhccc
Q 037920          171 ILCLRGSN-IKM--LPIEVSELA-------RLRLLGLRDCRELEVIPA--NVLSNLSHLEELYIGYNSFGKWEVEMEGVK  238 (505)
Q Consensus       171 ~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  238 (505)
                      +|++++|+ ++.  +|..+++++       +|++|++++| .+..+|.  . ++.+++|+.|++++|.+.        .+
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~--------~l  588 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVR--------HL  588 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCC--------BC
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcc--------cc
Confidence            99999997 875  787777665       9999999994 5558887  5 899999999999999873        45


Q ss_pred             cccccCCCCcCEEEeecccCCCCCCCCC-CCC-CcEEEEEEcceeecc-----cc---cceEEecCCCC---cc-chhhH
Q 037920          239 NASLHELKHLTSLELHIKDVNTLPRGLF-FPK-LQRYKIHIGGYYYAG-----VW---RRELKICPDSK---IR-LKDGL  304 (505)
Q Consensus       239 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~-L~~L~~~~~~~~~~~-----~~---~~~l~l~~~~~---~~-~~~~~  304 (505)
                      | .+..+++|+.|++++|.+..+|..+. +++ |+.|++..+....-.     ..   -..+.+..+.-   .+ .+..+
T Consensus       589 p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence            5 78889999999999999888888776 777 999988765322100     00   11133333111   11 00011


Q ss_pred             HH-HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC--Cccccccc--------cchhcchhhhhhhhc
Q 037920          305 IV-QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN--PAESKRRE--------ESTDVMQSHEIILKV  373 (505)
Q Consensus       305 ~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~--~~~~l~~L--------~l~~l~~~~~~~~~~  373 (505)
                      .. ..++|+.|++++|   .+..+|..+. ..+++|+.|++++|.-.  +...+..+        .++.++++.+.+...
T Consensus       668 ~~~~~~~L~~L~Ls~N---~L~~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l  743 (876)
T 4ecn_A          668 DDYKGINASTVTLSYN---EIQKFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL  743 (876)
T ss_dssp             TTCCCCCEEEEECCSS---CCCSCCHHHH-HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred             ccccCCCcCEEEccCC---cCCccCHHHH-ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc
Confidence            10 1347899999887   4446776653 46889999999988722  22222211        345666666655521


Q ss_pred             cccccccccc--cccccccccccccccccccccceeeccCccccccccccEEEEccccc------cccceeccccccccc
Q 037920          374 NVNALFVEKV--TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRV------LEELIVVENQEERKN  445 (505)
Q Consensus       374 ~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~------l~~i~~~~~~~~~~~  445 (505)
                           .....  .+++|+.|++++|++..++..         +..+++|+.|++++|+.      ...+  +.       
T Consensus       744 -----p~~l~~~~l~~L~~L~Ls~N~L~~lp~~---------l~~L~~L~~L~Ls~N~~ls~N~l~~~i--p~-------  800 (876)
T 4ecn_A          744 -----SDDFRATTLPYLSNMDVSYNCFSSFPTQ---------PLNSSQLKAFGIRHQRDAEGNRILRQW--PT-------  800 (876)
T ss_dssp             -----CGGGSTTTCTTCCEEECCSSCCSSCCCG---------GGGCTTCCEEECCCCBCTTCCBCCCCC--CT-------
T ss_pred             -----hHHhhhccCCCcCEEEeCCCCCCccchh---------hhcCCCCCEEECCCCCCcccccccccC--hH-------
Confidence                 11222  578889999988887776443         67888999999987442      2222  22       


Q ss_pred             ccccccccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920          446 SIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF  491 (505)
Q Consensus       446 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L  491 (505)
                      ....+++|+.|++++|.- ..++.   .+  +++|+.|++++||-.
T Consensus       801 ~l~~L~~L~~L~Ls~N~L-~~Ip~---~l--~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          801 GITTCPSLIQLQIGSNDI-RKVDE---KL--TPQLYILDIADNPNI  840 (876)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCS---CC--CSSSCEEECCSCTTC
T ss_pred             HHhcCCCCCEEECCCCCC-CccCH---hh--cCCCCEEECCCCCCC
Confidence            234579999999999874 66554   22  379999999999643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1e-26  Score=249.61  Aligned_cols=364  Identities=12%  Similarity=0.113  Sum_probs=260.4

Q ss_pred             cccccCCCcEEEecCCCCcc------------------CCCCC---CCCCccEEEeeecCCCCccccChhHHhCCCCccE
Q 037920           68 DESAIKLYTSIVLHDIRTNL------------------LPEVV---ESPQLKLLFICADQESSSLTIPNKFFERMMQVRV  126 (505)
Q Consensus        68 ~~~~~~~l~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  126 (505)
                      ....+++++.|++++|.+..                  +|...   .+++|+.|++  .++...+.+|.. |.++++|+.
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L--s~N~l~~~iP~~-l~~L~~L~~  519 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL--YNCPNMTQLPDF-LYDLPELQS  519 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE--ESCTTCCSCCGG-GGGCSSCCE
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC--cCCCCCccChHH-HhCCCCCCE
Confidence            35678899999999999977                  77654   6999999999  566667788866 488999999


Q ss_pred             EEEeCCc-Ccc--CcccccCCC-------CCCeeEeeccCCCC-cc--cccCCCCCcEEEccCCCCcccchhhhCCCCCC
Q 037920          127 INLTNIN-LMS--LPSSLGLLS-------NLRTLSLDNCKLLD-IT--VVRDLKKLEILCLRGSNIKMLPIEVSELARLR  193 (505)
Q Consensus       127 L~l~~~~-~~~--l~~~l~~l~-------~L~~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  193 (505)
                      |++++|. ++.  +|..++.++       +|++|++++|.+.. |.  .++++++|++|++++|+++.+| .++++++|+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~  598 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT  598 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence            9999998 775  777666555       99999999999888 66  7999999999999999999888 889999999


Q ss_pred             EEeeeCCCCCCccChhhhcCCCC-ccEEEeeCCCCCCchhhhhccccccccCCCC--cCEEEeecccCCCCCC----CCC
Q 037920          194 LLGLRDCRELEVIPANVLSNLSH-LEELYIGYNSFGKWEVEMEGVKNASLHELKH--LTSLELHIKDVNTLPR----GLF  266 (505)
Q Consensus       194 ~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~l~~----~~~  266 (505)
                      .|++++| .+..+|.. +..+++ |+.|++++|.+.        .+|..+..++.  |+.|++++|.+...+.    ...
T Consensus       599 ~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~--------~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          599 DLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLK--------YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             EEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCC--------SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             EEECcCC-ccccchHH-HhhccccCCEEECcCCCCC--------cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            9999984 45588877 788888 999999999874        45566666654  9999999998854322    211


Q ss_pred             ---CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhcc------CCC
Q 037920          267 ---FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKV------GPS  337 (505)
Q Consensus       267 ---~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~------~l~  337 (505)
                         ..+|+.|++..                 +.-...+..+...+++|+.|++++|   .+..+|..+...      .++
T Consensus       669 ~~~~~~L~~L~Ls~-----------------N~L~~lp~~~~~~l~~L~~L~Ls~N---~L~~ip~~~~~~~~~~l~nl~  728 (876)
T 4ecn_A          669 DYKGINASTVTLSY-----------------NEIQKFPTELFATGSPISTIILSNN---LMTSIPENSLKPKDGNYKNTY  728 (876)
T ss_dssp             TCCCCCEEEEECCS-----------------SCCCSCCHHHHHTTCCCSEEECCSC---CCSCCCTTSSSCTTSCCTTGG
T ss_pred             cccCCCcCEEEccC-----------------CcCCccCHHHHccCCCCCEEECCCC---cCCccChHHhccccccccccC
Confidence               34666666542                 2222345555556788999999987   444677655321      223


Q ss_pred             CccEEEEeCCCCCCcc-ccc--ccc-chhcchhhhhhhhccccccccccccccccccccccc------ccccc-ccccce
Q 037920          338 QLKHLHIWNHPPNPAE-SKR--REE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS------INVER-IWQSHV  406 (505)
Q Consensus       338 ~L~~L~l~~~~~~~~~-~l~--~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~~-~~~~~~  406 (505)
                      +|+.|++++|.-...+ .+.  .++ ++.++++.|.+.+.     ......+++|+.|++++      |++.. ++..  
T Consensus       729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~--  801 (876)
T 4ecn_A          729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG--  801 (876)
T ss_dssp             GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT--
T ss_pred             CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEECCCCCCcccccccccChHH--
Confidence            8999999988732221 121  232 45666667766652     22334789999999987      43332 2221  


Q ss_pred             eeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccC------CcccccCCCc
Q 037920          407 AVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTG------DVDILEFPSL  480 (505)
Q Consensus       407 ~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~------~~~~~~~~~L  480 (505)
                             +..+++|++|++++|. ++.+  +...         +++|+.|+|++|+-. ++...      ......+..-
T Consensus       802 -------l~~L~~L~~L~Ls~N~-L~~I--p~~l---------~~~L~~LdLs~N~l~-~i~~~~~~~~~~~~~~~L~~n  861 (876)
T 4ecn_A          802 -------ITTCPSLIQLQIGSND-IRKV--DEKL---------TPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYD  861 (876)
T ss_dssp             -------GGGCSSCCEEECCSSC-CCBC--CSCC---------CSSSCEEECCSCTTC-EEECGGGHHHHHTTCCEEECC
T ss_pred             -------HhcCCCCCEEECCCCC-CCcc--CHhh---------cCCCCEEECCCCCCC-ccChHHccccccchheeecCC
Confidence                   7889999999999998 5766  3322         379999999999843 22210      0112233444


Q ss_pred             cceecccCccce
Q 037920          481 KELIINRCPEFL  492 (505)
Q Consensus       481 ~~L~i~~C~~L~  492 (505)
                      +..+|++||.|.
T Consensus       862 ~~~~I~gC~~L~  873 (876)
T 4ecn_A          862 KTQDIRGCDALG  873 (876)
T ss_dssp             TTSEEESCGGGC
T ss_pred             CccccCCCCCcc
Confidence            566889999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=2.3e-26  Score=224.74  Aligned_cols=288  Identities=14%  Similarity=0.185  Sum_probs=226.5

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG  142 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~  142 (505)
                      +..++....++++++|++++|.+..++....+++|++|++   .++.+..++.  +..+++|++|++++|.+..++. +.
T Consensus        56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L---~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~  129 (347)
T 4fmz_A           56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYI---GTNKITDISA--LQNLTNLRELYLNEDNISDISP-LA  129 (347)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC---CSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred             cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEc---cCCcccCchH--HcCCCcCCEEECcCCcccCchh-hc
Confidence            4556667789999999999999988888779999999999   5566666754  6899999999999999999877 89


Q ss_pred             CCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEE
Q 037920          143 LLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY  221 (505)
Q Consensus       143 ~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  221 (505)
                      .+++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|++|++++| .+..++.  +..+++|+.++
T Consensus       130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~  205 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFT  205 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEE
T ss_pred             cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceee
Confidence            99999999999997544 7779999999999999999988865 889999999999994 5666665  78999999999


Q ss_pred             eeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920          222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK  301 (505)
Q Consensus       222 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~  301 (505)
                      +++|.+....         .+..+++|+.|++++|.+..++..                                     
T Consensus       206 l~~n~l~~~~---------~~~~~~~L~~L~l~~n~l~~~~~~-------------------------------------  239 (347)
T 4fmz_A          206 AYVNQITDIT---------PVANMTRLNSLKIGNNKITDLSPL-------------------------------------  239 (347)
T ss_dssp             CCSSCCCCCG---------GGGGCTTCCEEECCSSCCCCCGGG-------------------------------------
T ss_pred             cccCCCCCCc---------hhhcCCcCCEEEccCCccCCCcch-------------------------------------
Confidence            9999875432         178899999999999988765531                                     


Q ss_pred             hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccc
Q 037920          302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVE  381 (505)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~  381 (505)
                          ..+++|+.|++++|   .+..++ .+  ..+++|++|++++|....                           ...
T Consensus       240 ----~~l~~L~~L~l~~n---~l~~~~-~~--~~l~~L~~L~l~~n~l~~---------------------------~~~  282 (347)
T 4fmz_A          240 ----ANLSQLTWLEIGTN---QISDIN-AV--KDLTKLKMLNVGSNQISD---------------------------ISV  282 (347)
T ss_dssp             ----TTCTTCCEEECCSS---CCCCCG-GG--TTCTTCCEEECCSSCCCC---------------------------CGG
T ss_pred             ----hcCCCCCEEECCCC---ccCCCh-hH--hcCCCcCEEEccCCccCC---------------------------Chh
Confidence                12577888888877   333332 34  678889999998886111                           012


Q ss_pred             cccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCc
Q 037920          382 KVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDL  461 (505)
Q Consensus       382 ~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~  461 (505)
                      ...+++|+.|++++|.+....+..        +..+++|++|++++|+ ++.+..          ...+++|+.|+++++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~-l~~~~~----------~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNEDMEV--------IGGLTNLTTLFLSQNH-ITDIRP----------LASLSKMDSADFANQ  343 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGGGHHH--------HHTCTTCSEEECCSSS-CCCCGG----------GGGCTTCSEESSSCC
T ss_pred             hcCCCCCCEEECcCCcCCCcChhH--------hhccccCCEEEccCCc-cccccC----------hhhhhccceeehhhh
Confidence            235788999999988776653321        5678899999999987 665521          235688999998887


Q ss_pred             c
Q 037920          462 E  462 (505)
Q Consensus       462 ~  462 (505)
                      +
T Consensus       344 ~  344 (347)
T 4fmz_A          344 V  344 (347)
T ss_dssp             -
T ss_pred             c
Confidence            6

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.8e-27  Score=256.54  Aligned_cols=326  Identities=19%  Similarity=0.189  Sum_probs=194.1

Q ss_pred             ccChhHHhCCCCccEEEEeCCcCc-cCcccccCCC-CCCeeEeeccCCCC--cccccC--CCCCcEEEccCCCCc-ccch
Q 037920          112 TIPNKFFERMMQVRVINLTNINLM-SLPSSLGLLS-NLRTLSLDNCKLLD--ITVVRD--LKKLEILCLRGSNIK-MLPI  184 (505)
Q Consensus       112 ~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~L~~~~l~~--~~~i~~--l~~L~~L~l~~~~l~-~lp~  184 (505)
                      .+|...+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+.+  +..++.  +++|++|++++|+++ .+|.
T Consensus       333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  412 (768)
T 3rgz_A          333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP  412 (768)
T ss_dssp             ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred             cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence            344333344444444444444443 2444444443 44444444444433  333333  455555666555554 4455


Q ss_pred             hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCC
Q 037920          185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPR  263 (505)
Q Consensus       185 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~  263 (505)
                      .+.++++|++|++++|...+.+|.. ++.+++|++|++++|.+       .+.+|..+..+++|+.|++++|.+. .+|.
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l-------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  484 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNML-------EGEIPQELMYVKTLETLILDFNDLTGEIPS  484 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------CSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             HHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcc-------cCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence            6666666666666664433344544 56666666666666655       4455566666666666666666665 4454


Q ss_pred             CCC-CCCCcEEEEEEcceeecccccceEEecCCCCc-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccE
Q 037920          264 GLF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKI-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKH  341 (505)
Q Consensus       264 ~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~  341 (505)
                      .+. +++|+.|++..+                 .-. ..+.++.. +++|+.|++++|  .....+|..+  ..+++|+.
T Consensus       485 ~l~~l~~L~~L~L~~N-----------------~l~~~~p~~~~~-l~~L~~L~L~~N--~l~~~~p~~l--~~l~~L~~  542 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNN-----------------RLTGEIPKWIGR-LENLAILKLSNN--SFSGNIPAEL--GDCRSLIW  542 (768)
T ss_dssp             GGGGCTTCCEEECCSS-----------------CCCSCCCGGGGG-CTTCCEEECCSS--CCEEECCGGG--GGCTTCCE
T ss_pred             HHhcCCCCCEEEccCC-----------------ccCCcCChHHhc-CCCCCEEECCCC--cccCcCCHHH--cCCCCCCE
Confidence            443 566666655321                 111 22333333 788999999988  5556778777  67889999


Q ss_pred             EEEeCCCC---CCccc----------------------------------------------------------------
Q 037920          342 LHIWNHPP---NPAES----------------------------------------------------------------  354 (505)
Q Consensus       342 L~l~~~~~---~~~~~----------------------------------------------------------------  354 (505)
                      |++++|.-   ++...                                                                
T Consensus       543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            99988861   11000                                                                


Q ss_pred             -----ccccc-chhcchhhhhhhhccccccccccccccccccccccccccc-cccccceeeccCccccccccccEEEEcc
Q 037920          355 -----KRREE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVE-RIWQSHVAVMSCVSNNTFVRLQRIEIKN  427 (505)
Q Consensus       355 -----l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~v~~c~~l~~l~~L~~L~l~~  427 (505)
                           +..+. ++.++++.|.+.|...    ...+.+++|+.|++++|++. .++..         ++.+++|+.|++++
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N~l~g~ip~~---------l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHNDISGSIPDE---------VGDLRGLNILDLSS  689 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSSCCCSCCCGG---------GGGCTTCCEEECCS
T ss_pred             cCchhhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcCCccCCCCChH---------HhCCCCCCEEECCC
Confidence                 00011 3345555666555322    22356899999999999887 44433         88999999999999


Q ss_pred             ccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCcccee
Q 037920          428 CRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLM  493 (505)
Q Consensus       428 c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~  493 (505)
                      |.--..+  +...       ..+++|+.|++++++--..++.    .+.+.++....+.|+|.|-.
T Consensus       690 N~l~g~i--p~~l-------~~l~~L~~L~ls~N~l~g~iP~----~~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          690 NKLDGRI--PQAM-------SALTMLTEIDLSNNNLSGPIPE----MGQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             SCCEECC--CGGG-------GGCCCCSEEECCSSEEEEECCS----SSSGGGSCGGGGCSCTEEES
T ss_pred             CcccCcC--ChHH-------hCCCCCCEEECcCCcccccCCC----chhhccCCHHHhcCCchhcC
Confidence            9843344  4433       4569999999999986566665    45677777778888877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.6e-26  Score=233.39  Aligned_cols=329  Identities=16%  Similarity=0.215  Sum_probs=245.2

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL  141 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l  141 (505)
                      ++..++....++++++|++++|.+..++....+++|+.|++   .++.+..++.  +.++++|++|++++|.++.++. +
T Consensus        57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l---~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~  130 (466)
T 1o6v_A           57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM---NNNQIADITP--LANLTNLTGLTLFNNQITDIDP-L  130 (466)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEEC---CCCccccChh--hcCCCCCCEEECCCCCCCCChH-H
Confidence            34556667789999999999999988887779999999999   5666666666  6899999999999999999876 8


Q ss_pred             cCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEE
Q 037920          142 GLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY  221 (505)
Q Consensus       142 ~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  221 (505)
                      ..+++|++|++++|.+..++.++.+++|+.|++. +.+..++ .+.++++|++|++++| .+..++.  +..+++|++|+
T Consensus       131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~  205 (466)
T 1o6v_A          131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSN-KVSDISV--LAKLTNLESLI  205 (466)
T ss_dssp             TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEE
T ss_pred             cCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEE
Confidence            9999999999999999886678899999999996 4555554 3888999999999984 4555554  78899999999


Q ss_pred             eeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920          222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK  301 (505)
Q Consensus       222 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~  301 (505)
                      +++|.+....       +  +..+++|+.|++++|.+..++....+++|+.|++..+.                  +...
T Consensus       206 l~~n~l~~~~-------~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~------------------l~~~  258 (466)
T 1o6v_A          206 ATNNQISDIT-------P--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ------------------ISNL  258 (466)
T ss_dssp             CCSSCCCCCG-------G--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC------------------CCCC
T ss_pred             ecCCcccccc-------c--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc------------------cccc
Confidence            9988875432       2  66788899999998888877544348888888875321                  1111


Q ss_pred             hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc-chhcchhhhhhhhcccccccc
Q 037920          302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE-STDVMQSHEIILKVNVNALFV  380 (505)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~  380 (505)
                      .. ...+++|+.|++++|   .+..++. +  ..+++|+.|++++|.-.....+..++ ++.+++..+.+.+...     
T Consensus       259 ~~-~~~l~~L~~L~l~~n---~l~~~~~-~--~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----  326 (466)
T 1o6v_A          259 AP-LSGLTKLTELKLGAN---QISNISP-L--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----  326 (466)
T ss_dssp             GG-GTTCTTCSEEECCSS---CCCCCGG-G--TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----
T ss_pred             hh-hhcCCCCCEEECCCC---ccCcccc-c--cCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----
Confidence            11 223678888888887   3333443 3  56788888888887743333344443 4556666665555321     


Q ss_pred             ccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccC
Q 037920          381 EKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDD  460 (505)
Q Consensus       381 ~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~  460 (505)
                       ...+++|+.|++++|++..+..          +..+++|++|++++|. ++.+..          ...+++|+.|++++
T Consensus       327 -~~~l~~L~~L~l~~n~l~~~~~----------l~~l~~L~~L~l~~n~-l~~~~~----------~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNNKVSDVSS----------LANLTNINWLSAGHNQ-ISDLTP----------LANLTRITQLGLND  384 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSSC-CCBCGG----------GTTCTTCCEEECCC
T ss_pred             -hccCccCCEeECCCCccCCchh----------hccCCCCCEEeCCCCc-cCccch----------hhcCCCCCEEeccC
Confidence             3468999999999998877632          7789999999999987 555521          23568999999988


Q ss_pred             cc
Q 037920          461 LE  462 (505)
Q Consensus       461 ~~  462 (505)
                      |+
T Consensus       385 n~  386 (466)
T 1o6v_A          385 QA  386 (466)
T ss_dssp             EE
T ss_pred             Cc
Confidence            86

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.8e-26  Score=234.36  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             CCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920           73 KLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  150 (505)
                      +++++|++++|.+..++.  ...+++|++|++   .++.+..+++..|.++++|++|++++|.++.+|..  .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILII---SHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEEC---CSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEec---CCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence            556666666666555442  235556666666   33334444333345566666666666665555544  55666666


Q ss_pred             EeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCC--CEEeeeCCC
Q 037920          151 SLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARL--RLLGLRDCR  201 (505)
Q Consensus       151 ~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~  201 (505)
                      ++++|.+..   |..++.+++|++|++++|.++.  ..+..+++|  ++|++++|.
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence            666665544   3455566666666666655544  234445555  666665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=252.44  Aligned_cols=137  Identities=22%  Similarity=0.281  Sum_probs=116.7

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P  138 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~  138 (505)
                      +++.++.  .++++++|++++|.+..+..  ...+++|++|++  +++.....+++..|.++++|++|++++|.+..+ |
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdL--s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEE--CTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeC--CCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            5666776  78999999999999977643  349999999999  555577778666679999999999999999985 7


Q ss_pred             ccccCCCCCCeeEeeccCCCC--ccc--ccCCCCCcEEEccCCCCccc--chhhhCCCCCCEEeeeCCCC
Q 037920          139 SSLGLLSNLRTLSLDNCKLLD--ITV--VRDLKKLEILCLRGSNIKML--PIEVSELARLRLLGLRDCRE  202 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~--~~~--i~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~  202 (505)
                      ..+.++++|++|++++|.+.+  +..  ++++++|++|++++|.++.+  +..++++++|++|++++|..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            899999999999999999886  444  89999999999999999876  35789999999999999543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=6.3e-27  Score=246.21  Aligned_cols=192  Identities=17%  Similarity=0.225  Sum_probs=155.3

Q ss_pred             CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEee
Q 037920           75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLD  153 (505)
Q Consensus        75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~  153 (505)
                      -++++.+++.++.+|... .+++++|++   .++.+..++...|.++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~L---s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI-PSSTKNIDL---SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCcccCCCCC-CCCcCEEEC---CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            467899999999998754 389999999   66667777776679999999999999999986 5678999999999999


Q ss_pred             ccCCCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCC-ccChhhhcCCCCccEEEeeCCCCCC
Q 037920          154 NCKLLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELE-VIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       154 ~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      +|.+..  |..++++++|++|++++|.++.++ ..++++++|++|++++|.... .+|.. ++.+++|++|++++|.+..
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence            999888  688999999999999999999886 679999999999999965433 46776 8999999999999998853


Q ss_pred             chhhhhccccccccCCCCcC----EEEeecccCCCCCCCCC-CCCCcEEEEEEc
Q 037920          230 WEVEMEGVKNASLHELKHLT----SLELHIKDVNTLPRGLF-FPKLQRYKIHIG  278 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~  278 (505)
                             ..+..+..+++|+    .|++++|.+..++.... ..+|+.|++..+
T Consensus       168 -------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n  214 (606)
T 3vq2_A          168 -------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN  214 (606)
T ss_dssp             -------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             -------cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence                   3344455554443    78888888776665543 446667666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.3e-26  Score=243.81  Aligned_cols=382  Identities=15%  Similarity=0.143  Sum_probs=186.5

Q ss_pred             cccCCCcEEEecCCCCccCC--CCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCC
Q 037920           70 SAIKLYTSIVLHDIRTNLLP--EVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSN  146 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~  146 (505)
                      ..++++++|++++|.+..++  ....+++|++|++   .++.+..++...+..+++|++|++++|.++.+ |..+..+++
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  178 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL---GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ  178 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC---CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred             cccccccEeeccccCcccCCcchhccCCcccEEEC---CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence            45667777777777776552  2336777777777   44444433211123467777777777766664 345666666


Q ss_pred             CC--eeEeeccCCCC-cccccCCC----------------------------------------------------CCcE
Q 037920          147 LR--TLSLDNCKLLD-ITVVRDLK----------------------------------------------------KLEI  171 (505)
Q Consensus       147 L~--~L~L~~~~l~~-~~~i~~l~----------------------------------------------------~L~~  171 (505)
                      |+  .|++++|.+.. ++......                                                    +|+.
T Consensus       179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~  258 (606)
T 3t6q_A          179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES  258 (606)
T ss_dssp             CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred             cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence            66  56666665554 21111111                                                    3445


Q ss_pred             EEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCE
Q 037920          172 LCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS  250 (505)
Q Consensus       172 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  250 (505)
                      |++++|.++.++. .+..+++|++|++++ +.+..+|.. ++.+++|++|++++|.+.       +..+..+..+++|+.
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~-l~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSG-LVGLSTLKKLVLSANKFE-------NLCQISASNFPSLTH  329 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTT-SCCSCCCSS-CCSCTTCCEEECTTCCCS-------BGGGGCGGGCTTCSE
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccC-CccCCCChh-hcccccCCEEECccCCcC-------cCchhhhhccCcCCE
Confidence            5555555554432 255556666666655 344455554 455566666666655552       222344555555555


Q ss_pred             EEeecccCC-CCCCCC-C-CCCCcEEEEEEcceeecc----c-----ccceEEecCCCCccchhhHHHHhcceeEEeecC
Q 037920          251 LELHIKDVN-TLPRGL-F-FPKLQRYKIHIGGYYYAG----V-----WRRELKICPDSKIRLKDGLIVQLQGIEDLGLSK  318 (505)
Q Consensus       251 L~l~~~~~~-~l~~~~-~-~~~L~~L~~~~~~~~~~~----~-----~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (505)
                      |++++|.+. .++... . +++|+.|++..+......    .     .-..+.+..+............+++|+.|++++
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence            555555443 333321 1 555555554322111000    0     000011111111111111112255666666666


Q ss_pred             CCCCCcchhhhh-hhccCCCCccEEEEeCCCC--CCcccccccc-chhcchhhhhhhhcccccccccccccccccccccc
Q 037920          319 LPEQDVDYFVNE-LAKVGPSQLKHLHIWNHPP--NPAESKRREE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELD  394 (505)
Q Consensus       319 ~~~~~~~~~~~~-l~~~~l~~L~~L~l~~~~~--~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  394 (505)
                      |  ......+.. +  ..+++|++|++++|.-  .....+..++ ++.++++.+.+.+.... .......+++|+.|+++
T Consensus       410 n--~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          410 T--RLKVKDAQSPF--QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLS  484 (606)
T ss_dssp             C--CEECCTTCCTT--TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECT
T ss_pred             C--cCCCcccchhh--hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECC
Confidence            5  222222221 3  4566666666666652  1111222222 33444444444431110 01122346677777777


Q ss_pred             ccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCccc
Q 037920          395 SINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDI  474 (505)
Q Consensus       395 ~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~  474 (505)
                      +|++..+.+..        +..+++|++|++++|. ++.+. ++.       ...+++| .|+++++. +..+.  |..+
T Consensus       485 ~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~-~~~-------l~~l~~L-~L~L~~N~-l~~~~--~~~~  543 (606)
T 3t6q_A          485 FCDLSSIDQHA--------FTSLKMMNHVDLSHNR-LTSSS-IEA-------LSHLKGI-YLNLASNH-ISIIL--PSLL  543 (606)
T ss_dssp             TSCCCEECTTT--------TTTCTTCCEEECCSSC-CCGGG-GGG-------GTTCCSC-EEECCSSC-CCCCC--GGGH
T ss_pred             CCccCccChhh--------hccccCCCEEECCCCc-cCcCC-hhH-------hCccccc-EEECcCCc-ccccC--Hhhc
Confidence            77666553321        5667777777777775 44332 111       2344666 67777765 33322  2235


Q ss_pred             ccCCCccceecccCc
Q 037920          475 LEFPSLKELIINRCP  489 (505)
Q Consensus       475 ~~~~~L~~L~i~~C~  489 (505)
                      ..+++|+.|+++++|
T Consensus       544 ~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          544 PILSQQRTINLRQNP  558 (606)
T ss_dssp             HHHHTSSEEECTTCC
T ss_pred             ccCCCCCEEeCCCCC
Confidence            567788888888765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=3.5e-26  Score=237.63  Aligned_cols=158  Identities=16%  Similarity=0.206  Sum_probs=135.5

Q ss_pred             ccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc--CcccccCC
Q 037920           69 ESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS--LPSSLGLL  144 (505)
Q Consensus        69 ~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l  144 (505)
                      ...++++++|++++|.+..++.  ...+++|++|++   +++.+..++...|.++++|++|++++|.++.  .|..+..+
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL---SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEEC---CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            4568899999999999977764  349999999999   6677778888778999999999999999985  46789999


Q ss_pred             CCCCeeEeeccC-CCC-c-ccccCCCCCcEEEccCCCCcc-cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEE
Q 037920          145 SNLRTLSLDNCK-LLD-I-TVVRDLKKLEILCLRGSNIKM-LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEEL  220 (505)
Q Consensus       145 ~~L~~L~L~~~~-l~~-~-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  220 (505)
                      ++|++|++++|. +.. + ..++.+++|++|++++|+++. .|..+.++++|++|++++| ....++...++.+++|++|
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L  201 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYL  201 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEE
Confidence            999999999998 444 3 689999999999999999986 5788999999999999984 4566666545789999999


Q ss_pred             EeeCCCCCCc
Q 037920          221 YIGYNSFGKW  230 (505)
Q Consensus       221 ~l~~~~~~~~  230 (505)
                      ++++|.+...
T Consensus       202 ~L~~n~l~~~  211 (549)
T 2z81_A          202 ELRDTNLARF  211 (549)
T ss_dssp             EEESCBCTTC
T ss_pred             EccCCccccc
Confidence            9999988653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=4.8e-26  Score=237.75  Aligned_cols=384  Identities=15%  Similarity=0.125  Sum_probs=227.0

Q ss_pred             ccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCC
Q 037920           69 ESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLS  145 (505)
Q Consensus        69 ~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~  145 (505)
                      ...++++++|++++|.+..++.  ...+++|++|++   .++.+..+++..|.++++|++|++++|.++.++. .++.++
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  124 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL---TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  124 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeC---cCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence            4568899999999999987764  348999999999   6666777776667999999999999999998775 689999


Q ss_pred             CCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCccc-chhhhCCCCC----CEEeeeCCCCCCccChhhhcCCCCc
Q 037920          146 NLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKML-PIEVSELARL----RLLGLRDCRELEVIPANVLSNLSHL  217 (505)
Q Consensus       146 ~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L----~~L~l~~~~~~~~~~~~~~~~l~~L  217 (505)
                      +|++|++++|.+..   |..++++++|++|++++|+++.+ |..+..+++|    +.|++++ +.+..++...+.. .+|
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~-n~l~~~~~~~~~~-~~L  202 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKE-IRL  202 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT-CCCCEECTTTTTT-CEE
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC-CCceecCHHHhcc-Ccc
Confidence            99999999999875   68899999999999999999876 4567777777    7888887 4444554442333 256


Q ss_pred             cEEEeeCCCCCCchh---------------------------------------------------hhhccccccccCCC
Q 037920          218 EELYIGYNSFGKWEV---------------------------------------------------EMEGVKNASLHELK  246 (505)
Q Consensus       218 ~~L~l~~~~~~~~~~---------------------------------------------------~~~~~~~~~l~~l~  246 (505)
                      ++|++++|.......                                                   .+.+..+..+..++
T Consensus       203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~  282 (570)
T 2z63_A          203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT  282 (570)
T ss_dssp             EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred             eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence            666666542110000                                                   00122344455566


Q ss_pred             CcCEEEeecccCCCCCCCCC-CCCCcEEEEEEcceeecc--c--ccceEEecC----------------------CCCcc
Q 037920          247 HLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYYYAG--V--WRRELKICP----------------------DSKIR  299 (505)
Q Consensus       247 ~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~~~~--~--~~~~l~l~~----------------------~~~~~  299 (505)
                      +|+.|+++++.+..+|..+. + +|+.|++..+....-.  .  .-..+.+..                      +....
T Consensus       283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~  361 (570)
T 2z63_A          283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF  361 (570)
T ss_dssp             TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred             cccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCc
Confidence            66777766666666665544 3 5555555433211000  0  000022222                      11100


Q ss_pred             c---hhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC---Ccccccccc-chhcchhhhhhhh
Q 037920          300 L---KDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN---PAESKRREE-STDVMQSHEIILK  372 (505)
Q Consensus       300 ~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~---~~~~l~~L~-l~~l~~~~~~~~~  372 (505)
                      .   +..+ ..+++|+.|++++|   ....++..+  ..+++|++|++++|.-.   ....+..++ ++.++++.+.+.+
T Consensus       362 ~~~~~~~~-~~~~~L~~L~l~~n---~l~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          362 KGCCSQSD-FGTTSLKYLDLSFN---GVITMSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             EEEEEHHH-HTCSCCCEEECCSC---SEEEEEEEE--ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             cccccccc-cccCccCEEECCCC---ccccccccc--cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            0   1111 22455555555554   233333333  44555555555555411   001122221 2233333333332


Q ss_pred             cccccccccccccccccccccccccccc--ccccceeeccCccccccccccEEEEccccccccceecccccccccccccc
Q 037920          373 VNVNALFVEKVTLPKLENLELDSINVER--IWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIF  450 (505)
Q Consensus       373 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~  450 (505)
                      ...    .....+++|+.|++++|++..  ++..         +..+++|++|++++|. ++.+. +.       ....+
T Consensus       436 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~p~~---------~~~l~~L~~L~l~~n~-l~~~~-~~-------~~~~l  493 (570)
T 2z63_A          436 AFN----GIFNGLSSLEVLKMAGNSFQENFLPDI---------FTELRNLTFLDLSQCQ-LEQLS-PT-------AFNSL  493 (570)
T ss_dssp             CCT----TTTTTCTTCCEEECTTCEEGGGEECSC---------CTTCTTCCEEECTTSC-CCEEC-TT-------TTTTC
T ss_pred             cch----hhhhcCCcCcEEECcCCcCccccchhh---------hhcccCCCEEECCCCc-cccCC-hh-------hhhcc
Confidence            110    111246666666666665542  2211         5667777777777775 44332 11       13456


Q ss_pred             cccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920          451 PQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       451 p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                      ++|+.|++++|. +..+..  ..+..+++|+.|+++++|
T Consensus       494 ~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          494 SSLQVLNMASNQ-LKSVPD--GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             cCCCEEeCCCCc-CCCCCH--HHhhcccCCcEEEecCCc
Confidence            888888888874 544432  235678888888888864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=4.6e-26  Score=226.25  Aligned_cols=302  Identities=17%  Similarity=0.196  Sum_probs=201.1

Q ss_pred             ccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCC
Q 037920           71 AIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNL  147 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L  147 (505)
                      ..+++++++++++.+..+|..  ..+++|++|++   .++.+..++...|..+++|++|++++|.++.++ ..+..+++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL---NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEEC---CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            457788888888888777764  27788888888   555566666555678888888888888887754 456788888


Q ss_pred             CeeEeeccCCCC-ccc-ccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeC
Q 037920          148 RTLSLDNCKLLD-ITV-VRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY  224 (505)
Q Consensus       148 ~~L~L~~~~l~~-~~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  224 (505)
                      ++|++++|.+.. +.. ++.+++|++|++++|+++.++ ..+.++++|++|++++ +.+..++   ++.+++|+.|++++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSY  195 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccc
Confidence            888888888777 443 577888888888888877664 4577788888888887 4445543   46677888888887


Q ss_pred             CCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhH
Q 037920          225 NSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGL  304 (505)
Q Consensus       225 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~  304 (505)
                      |.+..            +...++|+.|++++|.+..+|... .++|+.|++..+                  .+.....+
T Consensus       196 n~l~~------------~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n------------------~l~~~~~l  244 (390)
T 3o6n_A          196 NLLST------------LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHN------------------NLTDTAWL  244 (390)
T ss_dssp             SCCSE------------EECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSS------------------CCCCCGGG
T ss_pred             ccccc------------cCCCCcceEEECCCCeeeeccccc-cccccEEECCCC------------------CCcccHHH
Confidence            76632            334457888888888777665543 566777665421                  11111222


Q ss_pred             HHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccc
Q 037920          305 IVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVT  384 (505)
Q Consensus       305 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~  384 (505)
                       ..+++|+.|++++|  ......|..+  ..+++|++|++++|.-.                     +     +......
T Consensus       245 -~~l~~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~L~~n~l~---------------------~-----~~~~~~~  293 (390)
T 3o6n_A          245 -LNYPGLVEVDLSYN--ELEKIMYHPF--VKMQRLERLYISNNRLV---------------------A-----LNLYGQP  293 (390)
T ss_dssp             -GGCTTCSEEECCSS--CCCEEESGGG--TTCSSCCEEECCSSCCC---------------------E-----EECSSSC
T ss_pred             -cCCCCccEEECCCC--cCCCcChhHc--cccccCCEEECCCCcCc---------------------c-----cCcccCC
Confidence             23677777777777  3333345555  56777777777776511                     0     1111135


Q ss_pred             ccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          385 LPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       385 ~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      +|+|+.|++++|++..++..         +..+++|++|++++|. ++.+.           ...+++|+.|++++++
T Consensus       294 l~~L~~L~L~~n~l~~~~~~---------~~~l~~L~~L~L~~N~-i~~~~-----------~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          294 IPTLKVLDLSHNHLLHVERN---------QPQFDRLENLYLDHNS-IVTLK-----------LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CTTCCEEECCSSCCCCCGGG---------HHHHTTCSEEECCSSC-CCCCC-----------CCTTCCCSEEECCSSC
T ss_pred             CCCCCEEECCCCcceecCcc---------ccccCcCCEEECCCCc-cceeC-----------chhhccCCEEEcCCCC
Confidence            77788888888877666443         5667788888888776 55441           2345778888877766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-26  Score=225.49  Aligned_cols=306  Identities=15%  Similarity=0.216  Sum_probs=239.2

Q ss_pred             CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCC
Q 037920           91 VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLK  167 (505)
Q Consensus        91 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~  167 (505)
                      ...+++++.|++   .++.+..+|..+|..+++|++|++++|.++.++. .+..+++|++|++++|.+..  +..++.++
T Consensus        41 ~~~l~~l~~l~l---~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           41 DITLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             SGGGCCCSEEEE---ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccccCCceEEEe---cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence            346789999999   6777888999989999999999999999998664 89999999999999999988  46789999


Q ss_pred             CCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCC
Q 037920          168 KLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELK  246 (505)
Q Consensus       168 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  246 (505)
                      +|++|++++|+++.+|.. +.++++|++|++++ +.+..++...++.+++|++|++++|.+...          .+..++
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~  186 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIP  186 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------CGGGCT
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc----------cccccc
Confidence            999999999999999876 58999999999999 455666655589999999999999988542          356789


Q ss_pred             CcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcch
Q 037920          247 HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDY  326 (505)
Q Consensus       247 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  326 (505)
                      +|+.|++++|.+..++.   .++|+.|++..+....                 .+.   ..+++|+.|++++|   .+..
T Consensus       187 ~L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~-----------------~~~---~~~~~L~~L~l~~n---~l~~  240 (390)
T 3o6n_A          187 SLFHANVSYNLLSTLAI---PIAVEELDASHNSINV-----------------VRG---PVNVELTILKLQHN---NLTD  240 (390)
T ss_dssp             TCSEEECCSSCCSEEEC---CSSCSEEECCSSCCCE-----------------EEC---CCCSSCCEEECCSS---CCCC
T ss_pred             ccceeecccccccccCC---CCcceEEECCCCeeee-----------------ccc---cccccccEEECCCC---CCcc
Confidence            99999999998876543   4578887765321110                 010   11478999999998   3333


Q ss_pred             hhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccce
Q 037920          327 FVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHV  406 (505)
Q Consensus       327 ~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  406 (505)
                      . .++  ..+++|++|++++|...                     +.    .......+++|+.|++++|+++.++..  
T Consensus       241 ~-~~l--~~l~~L~~L~Ls~n~l~---------------------~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~--  290 (390)
T 3o6n_A          241 T-AWL--LNYPGLVEVDLSYNELE---------------------KI----MYHPFVKMQRLERLYISNNRLVALNLY--  290 (390)
T ss_dssp             C-GGG--GGCTTCSEEECCSSCCC---------------------EE----ESGGGTTCSSCCEEECCSSCCCEEECS--
T ss_pred             c-HHH--cCCCCccEEECCCCcCC---------------------Cc----ChhHccccccCCEEECCCCcCcccCcc--
Confidence            3 345  67899999999998611                     10    111223689999999999988887543  


Q ss_pred             eeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecc
Q 037920          407 AVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIIN  486 (505)
Q Consensus       407 ~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~  486 (505)
                             ...+|+|++|++++|. ++.+  +..       ...+++|+.|++++++ +..++     +..+++|+.|+++
T Consensus       291 -------~~~l~~L~~L~L~~n~-l~~~--~~~-------~~~l~~L~~L~L~~N~-i~~~~-----~~~~~~L~~L~l~  347 (390)
T 3o6n_A          291 -------GQPIPTLKVLDLSHNH-LLHV--ERN-------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLS  347 (390)
T ss_dssp             -------SSCCTTCCEEECCSSC-CCCC--GGG-------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECC
T ss_pred             -------cCCCCCCCEEECCCCc-ceec--Ccc-------ccccCcCCEEECCCCc-cceeC-----chhhccCCEEEcC
Confidence                   5678999999999996 6655  332       3457999999999997 44432     5678999999999


Q ss_pred             cCc
Q 037920          487 RCP  489 (505)
Q Consensus       487 ~C~  489 (505)
                      ++|
T Consensus       348 ~N~  350 (390)
T 3o6n_A          348 HND  350 (390)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            974

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=2e-25  Score=226.40  Aligned_cols=368  Identities=18%  Similarity=0.216  Sum_probs=241.3

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P  138 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~  138 (505)
                      +++.++.  .++++++|++++|.+..++.  ...+++|++|++  .++.....++...|.++++|++|++++|.++.+ |
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~   96 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKV--EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET   96 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEEC--CCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred             CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEEC--cCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence            4556665  56889999999999977633  348999999999  455455577776679999999999999999885 7


Q ss_pred             ccccCCCCCCeeEeeccCCCC--ccc--ccCCCCCcEEEccCCCCccc-chh-hhCCCCCCEEeeeCCCCCCccChhhhc
Q 037920          139 SSLGLLSNLRTLSLDNCKLLD--ITV--VRDLKKLEILCLRGSNIKML-PIE-VSELARLRLLGLRDCRELEVIPANVLS  212 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~  212 (505)
                      ..+..+++|++|++++|.+.+  +..  ++.+++|++|++++|+++.+ |.. +.++++|++|++++|. +...+...+.
T Consensus        97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~  175 (455)
T 3v47_A           97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLL  175 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSG
T ss_pred             hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhh
Confidence            789999999999999999887  444  88999999999999999877 544 7899999999999954 4444333255


Q ss_pred             CC--CCccEEEeeCCCCCCchhh-hhccccccccCCCCcCEEEeecccCCC-CCCCCC----CCCCcEEEEEEcceeecc
Q 037920          213 NL--SHLEELYIGYNSFGKWEVE-MEGVKNASLHELKHLTSLELHIKDVNT-LPRGLF----FPKLQRYKIHIGGYYYAG  284 (505)
Q Consensus       213 ~l--~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~~~~----~~~L~~L~~~~~~~~~~~  284 (505)
                      .+  .+|+.|++++|.+...... +.......+..+++|+.|++++|.+.. .|..+.    .++++.+.+..+......
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS  255 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred             ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence            54  6899999999988654320 000111234567889999999998763 333221    366777665322100000


Q ss_pred             cccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcc
Q 037920          285 VWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVM  364 (505)
Q Consensus       285 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~  364 (505)
                        .....+.........   .-..++|+.|++++|  ......|..+  ..+++|++|++++|.-...            
T Consensus       256 --~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~n--~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~------------  314 (455)
T 3v47_A          256 --FGHTNFKDPDNFTFK---GLEASGVKTCDLSKS--KIFALLKSVF--SHFTDLEQLTLAQNEINKI------------  314 (455)
T ss_dssp             --TTCCSSCCCCTTTTG---GGTTSCCCEEECCSS--CCCEECTTTT--TTCTTCCEEECTTSCCCEE------------
T ss_pred             --cchhhhccCcccccc---cccccCceEEEecCc--cccccchhhc--ccCCCCCEEECCCCccccc------------
Confidence              000000000000000   001368999999988  4455556666  7789999999988862110            


Q ss_pred             hhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccc
Q 037920          365 QSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERK  444 (505)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~  444 (505)
                                   .......+++|++|++++|++..+.+..        +..+++|++|++++|. ++.+. +.      
T Consensus       315 -------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~-~~------  365 (455)
T 3v47_A          315 -------------DDNAFWGLTHLLKLNLSQNFLGSIDSRM--------FENLDKLEVLDLSYNH-IRALG-DQ------  365 (455)
T ss_dssp             -------------CTTTTTTCTTCCEEECCSSCCCEECGGG--------GTTCTTCCEEECCSSC-CCEEC-TT------
T ss_pred             -------------ChhHhcCcccCCEEECCCCccCCcChhH--------hcCcccCCEEECCCCc-ccccC-hh------
Confidence                         0011124677777778777766653321        5667777888877775 44442 11      


Q ss_pred             cccccccccccccccCcccccccccCCcccccCCCccceecccC
Q 037920          445 NSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRC  488 (505)
Q Consensus       445 ~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C  488 (505)
                       ....+++|++|+++++. +++++.  ..+..+++|+.|+++++
T Consensus       366 -~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          366 -SFLGLPNLKELALDTNQ-LKSVPD--GIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             -TTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSS
T ss_pred             -hccccccccEEECCCCc-cccCCH--hHhccCCcccEEEccCC
Confidence             12345777777777764 444432  12456777777777765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=5.6e-26  Score=234.48  Aligned_cols=370  Identities=12%  Similarity=0.126  Sum_probs=256.4

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~  154 (505)
                      +++++++|.++.+|.... ++|++|++   .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNI---SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEEC---CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccccccccc-ccccEEEC---CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            689999999998987555 89999999   66667777766679999999999999999986 67899999999999999


Q ss_pred             cCCCC-cccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc--cEEEeeCCCC--
Q 037920          155 CKLLD-ITVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHL--EELYIGYNSF--  227 (505)
Q Consensus       155 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--  227 (505)
                      |.+.. |..  .+++|++|++++|.++.  +|..++++++|++|++++|. +..   ..+..+++|  ++|++++|.+  
T Consensus        79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccc
Confidence            99988 444  89999999999999986  57889999999999999954 333   226677777  9999998876  


Q ss_pred             CCchh-hhh-------------------------------------------------ccccccccC-------------
Q 037920          228 GKWEV-EME-------------------------------------------------GVKNASLHE-------------  244 (505)
Q Consensus       228 ~~~~~-~~~-------------------------------------------------~~~~~~l~~-------------  244 (505)
                      ..... .+.                                                 +.++ .+..             
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            21110 000                                                 0000 1111             


Q ss_pred             --------------CCCcCEEEeecccCC-CCCCCC-----C-CCCCcEEEEEEcceeecc---------cccceEEecC
Q 037920          245 --------------LKHLTSLELHIKDVN-TLPRGL-----F-FPKLQRYKIHIGGYYYAG---------VWRRELKICP  294 (505)
Q Consensus       245 --------------l~~L~~L~l~~~~~~-~l~~~~-----~-~~~L~~L~~~~~~~~~~~---------~~~~~l~l~~  294 (505)
                                    .++|+.|++++|.+. .+|..+     . +++|+.+++..+......         ..-..+.+..
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~  311 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG  311 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence                          237888888888887 778775     2 555666665544331110         0011244444


Q ss_pred             CCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcc----cccccc-chhcchhhhh
Q 037920          295 DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE----SKRREE-STDVMQSHEI  369 (505)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~----~l~~L~-l~~l~~~~~~  369 (505)
                      .......  ....+++|+.|++++|  ......|..+  ..+++|++|++++|.....+    .+..++ ++.++++.+.
T Consensus       312 n~l~~~~--~~~~l~~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          312 TRMVHML--CPSKISPFLHLDFSNN--LLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSS--CCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             Ccccccc--chhhCCcccEEEeECC--ccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence            2222111  0023788999999998  4444567777  78899999999998844321    133333 5566666666


Q ss_pred             hhhccccccccccccccccccccccccccccccccceeeccCcccccc-ccccEEEEccccccccceecccccccccccc
Q 037920          370 ILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTF-VRLQRIEIKNCRVLEELIVVENQEERKNSIV  448 (505)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~  448 (505)
                      +.+.....   ....+++|+.|++++|++....+           ..+ ++|++|++++|. ++.+  +...       .
T Consensus       386 l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~-----------~~l~~~L~~L~Ls~N~-l~~i--p~~~-------~  441 (520)
T 2z7x_B          386 VSYDEKKG---DCSWTKSLLSLNMSSNILTDTIF-----------RCLPPRIKVLDLHSNK-IKSI--PKQV-------V  441 (520)
T ss_dssp             CBCCGGGC---SCCCCTTCCEEECCSSCCCGGGG-----------GSCCTTCCEEECCSSC-CCCC--CGGG-------G
T ss_pred             CCcccccc---hhccCccCCEEECcCCCCCcchh-----------hhhcccCCEEECCCCc-cccc--chhh-------h
Confidence            65521111   12357899999999998754321           222 799999999996 7666  4333       2


Q ss_pred             cccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920          449 IFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       449 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                      .+++|++|+++++. ++.++..  .+..+++|+.|+++++|
T Consensus       442 ~l~~L~~L~L~~N~-l~~l~~~--~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          442 KLEALQELNVASNQ-LKSVPDG--IFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             GCTTCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCc-CCccCHH--HhccCCcccEEECcCCC
Confidence            56999999999985 6665441  26779999999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=1.9e-25  Score=238.06  Aligned_cols=164  Identities=18%  Similarity=0.198  Sum_probs=127.6

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS  139 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  139 (505)
                      +++.++. ...+++++|++++|.+..++.  ..++++|++|++   .++.+..+++..|.++++|++|++++|.++.+|.
T Consensus        15 ~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~   90 (680)
T 1ziw_A           15 KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV---GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD   90 (680)
T ss_dssp             CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEEC---CSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred             Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEEC---CCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence            3444443 345789999999999988775  348899999999   5555666666667889999999999999998876


Q ss_pred             -cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhc--C
Q 037920          140 -SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLS--N  213 (505)
Q Consensus       140 -~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~--~  213 (505)
                       .+..+++|++|++++|.+.. + ..++++++|++|++++|.++.. |..+.++++|++|++++| .+..++...+.  .
T Consensus        91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFA  169 (680)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGT
T ss_pred             hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccc
Confidence             58899999999999999887 3 6788999999999999988765 456788999999999884 45555543333  5


Q ss_pred             CCCccEEEeeCCCCCCc
Q 037920          214 LSHLEELYIGYNSFGKW  230 (505)
Q Consensus       214 l~~L~~L~l~~~~~~~~  230 (505)
                      +++|++|++++|.+...
T Consensus       170 ~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             TCEESEEECTTCCCCCB
T ss_pred             cccccEEECCCCccccc
Confidence            57888888888877543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=4.4e-25  Score=225.24  Aligned_cols=311  Identities=19%  Similarity=0.232  Sum_probs=174.9

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~  154 (505)
                      +.++.+++.+..+|... .++++.|++   .++.+..++...|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDL---GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEEC---CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEEC---CCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555555554322 245555555   33444444433345555556666555555553 44555555566666655


Q ss_pred             cCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920          155 CKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE  231 (505)
Q Consensus       155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  231 (505)
                      |.+.. + ..++.+++|++|++++|+++.+ |..+.++++|++|++++ +.+..++...+..+++|++|++++|.+...+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            55555 2 3345555566666655555544 33455555566665555 2333333322555555666666555553221


Q ss_pred             hhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920          232 VEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ  309 (505)
Q Consensus       232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~  309 (505)
                             +..+..+++|+.|++++|.+..++....  +++|+.|++..+...              .  ..+..... ..
T Consensus       169 -------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~--------------~--~~~~~~~~-~~  224 (477)
T 2id5_A          169 -------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL--------------D--TMTPNCLY-GL  224 (477)
T ss_dssp             -------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC--------------C--EECTTTTT-TC
T ss_pred             -------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc--------------c--ccCccccc-Cc
Confidence                   2335555555666655555554333221  455555554321100              0  00001111 34


Q ss_pred             ceeEEeecCCCCCCcchhhh-hhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccc
Q 037920          310 GIEDLGLSKLPEQDVDYFVN-ELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKL  388 (505)
Q Consensus       310 ~L~~L~l~~~~~~~~~~~~~-~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L  388 (505)
                      +|+.|++++|   .++.+|. .+  ..+++|+.|++++|....      +.                .   .....+++|
T Consensus       225 ~L~~L~l~~n---~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~------~~----------------~---~~~~~l~~L  274 (477)
T 2id5_A          225 NLTSLSITHC---NLTAVPYLAV--RHLVYLRFLNLSYNPIST------IE----------------G---SMLHELLRL  274 (477)
T ss_dssp             CCSEEEEESS---CCCSCCHHHH--TTCTTCCEEECCSSCCCE------EC----------------T---TSCTTCTTC
T ss_pred             cccEEECcCC---cccccCHHHh--cCccccCeeECCCCcCCc------cC----------------h---hhccccccC
Confidence            8999999998   4555664 44  778999999999986111      00                1   112358899


Q ss_pred             ccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          389 ENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       389 ~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      +.|++++|++..+.+..        +..+++|++|++++|. ++.+.  ..      ....+++|+.|++.+++
T Consensus       275 ~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~N~-l~~~~--~~------~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          275 QEIQLVGGQLAVVEPYA--------FRGLNYLRVLNVSGNQ-LTTLE--ES------VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CEEECCSSCCSEECTTT--------BTTCTTCCEEECCSSC-CSCCC--GG------GBSCGGGCCEEECCSSC
T ss_pred             CEEECCCCccceECHHH--------hcCcccCCEEECCCCc-CceeC--Hh------HcCCCcccCEEEccCCC
Confidence            99999999888774432        6788999999999996 66652  21      13456999999998887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=8.8e-25  Score=227.55  Aligned_cols=373  Identities=16%  Similarity=0.148  Sum_probs=193.2

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEe
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSL  152 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L  152 (505)
                      ..++++++++.++.+|.... +++++|++   .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~L---s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP-PRTKALSL---SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC-TTCCEEEC---CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCccCCCCCC-CCcCEEEC---CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            34666666666666665332 66666766   44445555544456666777777777666664 455666667777777


Q ss_pred             eccCCCC-cccccCCCCCcEEEccCCCCcccc--hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc--cEEEeeCCCC
Q 037920          153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP--IEVSELARLRLLGLRDCRELEVIPANVLSNLSHL--EELYIGYNSF  227 (505)
Q Consensus       153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~  227 (505)
                      ++|.+.. |..  .+++|++|++++|+++.+|  ..++++++|++|++++|. +....   +..+++|  ++|++++|.+
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence            7666666 333  6666777777766666543  566666677777766632 22211   3333444  6666666655


Q ss_pred             --CCchh-hhhc------------------cccccccCCC----------------------------------------
Q 037920          228 --GKWEV-EMEG------------------VKNASLHELK----------------------------------------  246 (505)
Q Consensus       228 --~~~~~-~~~~------------------~~~~~l~~l~----------------------------------------  246 (505)
                        ..... .+..                  .....+..++                                        
T Consensus       182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred             cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence              21110 0000                  0000111122                                        


Q ss_pred             ---------------CcCEEEeecccCC-CCCCCCC---CCCCcEEEEEEcceeec-c-----------cccceEEecCC
Q 037920          247 ---------------HLTSLELHIKDVN-TLPRGLF---FPKLQRYKIHIGGYYYA-G-----------VWRRELKICPD  295 (505)
Q Consensus       247 ---------------~L~~L~l~~~~~~-~l~~~~~---~~~L~~L~~~~~~~~~~-~-----------~~~~~l~l~~~  295 (505)
                                     +|+.|++++|.+. .+|..+.   ..+++.|.+.......- .           .....+.+...
T Consensus       262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence                           4555555555554 4555431   14455544432211100 0           00001222221


Q ss_pred             CCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcc----cccccc-chhcchhhhhh
Q 037920          296 SKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE----SKRREE-STDVMQSHEII  370 (505)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~----~l~~L~-l~~l~~~~~~~  370 (505)
                      ...+..  ....+++|+.|++++|  ......|..+  ..+++|++|++++|.-...+    .+..+. ++.++++.+.+
T Consensus       342 ~~~~~~--~~~~l~~L~~L~l~~n--~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          342 PFIHMV--CPPSPSSFTFLNFTQN--VFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL  415 (562)
T ss_dssp             CCCCCC--CCSSCCCCCEEECCSS--CCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred             Cccccc--CccCCCCceEEECCCC--ccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence            111110  0022567777777776  3333455555  66777777777777632211    122222 34455555554


Q ss_pred             hhccccccccccccccccccccccccccccccccceeeccCcccccc-ccccEEEEccccccccceeccccccccccccc
Q 037920          371 LKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTF-VRLQRIEIKNCRVLEELIVVENQEERKNSIVI  449 (505)
Q Consensus       371 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~  449 (505)
                      .+......   ...+++|+.|++++|++....           ...+ ++|++|++++|. ++.+  +...       ..
T Consensus       416 ~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~~L~~L~L~~N~-l~~i--p~~~-------~~  471 (562)
T 3a79_B          416 NSHAYDRT---CAWAESILVLNLSSNMLTGSV-----------FRCLPPKVKVLDLHNNR-IMSI--PKDV-------TH  471 (562)
T ss_dssp             BSCCSSCC---CCCCTTCCEEECCSSCCCGGG-----------GSSCCTTCSEEECCSSC-CCCC--CTTT-------TS
T ss_pred             CCccChhh---hcCcccCCEEECCCCCCCcch-----------hhhhcCcCCEEECCCCc-Cccc--Chhh-------cC
Confidence            44111111   124566777777776654321           1223 578888888774 6655  3322       24


Q ss_pred             ccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920          450 FPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       450 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                      +++|+.|+++++. ++.++..  .+..+++|+.|+++++|
T Consensus       472 l~~L~~L~L~~N~-l~~l~~~--~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          472 LQALQELNVASNQ-LKSVPDG--VFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             SCCCSEEECCSSC-CCCCCTT--STTTCTTCCCEECCSCC
T ss_pred             CCCCCEEECCCCC-CCCCCHH--HHhcCCCCCEEEecCCC
Confidence            5888888888875 5554431  26678888888888864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=5.3e-25  Score=222.25  Aligned_cols=313  Identities=15%  Similarity=0.141  Sum_probs=223.7

Q ss_pred             cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920           68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL  147 (505)
Q Consensus        68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  147 (505)
                      ....++++++|++++|.+..+|....+++|++|++   .++.+..++   +..+++|++|++++|.++.++  ++.+++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L---s~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLIC---TSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEEC---CSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEc---cCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence            34568999999999999998887779999999999   555666665   588999999999999999985  8899999


Q ss_pred             CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      ++|++++|.+..++ ++.+++|++|++++|+++.++  ++.+++|++|++++|..++.++   ++.+++|++|++++|.+
T Consensus       109 ~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          109 TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             CEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence            99999999998853 889999999999999999875  7899999999999987777773   68899999999999988


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ  307 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~  307 (505)
                      ..        ++  +..+++|+.|++++|.+..++ ...+++|+.|++..+..               ..++     ...
T Consensus       183 ~~--------l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l---------------~~ip-----~~~  231 (457)
T 3bz5_A          183 TE--------LD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKL---------------TEID-----VTP  231 (457)
T ss_dssp             CC--------CC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCC---------------SCCC-----CTT
T ss_pred             ce--------ec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcc---------------cccC-----ccc
Confidence            43        33  788999999999999988764 22277777777643211               1111     123


Q ss_pred             hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccc
Q 037920          308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPK  387 (505)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (505)
                      +++|+.|++++|   .+..+|  .  ..+++|+.|+++.+.           ++.+++..+...+..      +...+++
T Consensus       232 l~~L~~L~l~~N---~l~~~~--~--~~l~~L~~L~l~~n~-----------L~~L~l~~n~~~~~~------~~~~l~~  287 (457)
T 3bz5_A          232 LTQLTYFDCSVN---PLTELD--V--STLSKLTTLHCIQTD-----------LLEIDLTHNTQLIYF------QAEGCRK  287 (457)
T ss_dssp             CTTCSEEECCSS---CCSCCC--C--TTCTTCCEEECTTCC-----------CSCCCCTTCTTCCEE------ECTTCTT
T ss_pred             cCCCCEEEeeCC---cCCCcC--H--HHCCCCCEEeccCCC-----------CCEEECCCCccCCcc------ccccccc
Confidence            677888888877   333333  2  456777777776654           222333333322211      1235788


Q ss_pred             ccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          388 LENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       388 L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      |+.|++++| .+..++.....+..-. +..+++|++|+++++. ++.+           ....+++|+.|+++++.
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~N~-l~~l-----------~l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTE-LTEL-----------DVSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCCEEECTTCC-CSCC-----------CCTTCTTCSEEECCSSC
T ss_pred             CCEEECCCCcccceeccCCCcceEec-hhhcccCCEEECCCCc-cccc-----------ccccCCcCcEEECCCCC
Confidence            888888888 5555543211111110 4555666777766665 4433           12345777777777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=9.7e-26  Score=228.71  Aligned_cols=321  Identities=14%  Similarity=0.130  Sum_probs=222.1

Q ss_pred             cccccCCCcEEEecCCCCc-cCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-Cccc--c
Q 037920           68 DESAIKLYTSIVLHDIRTN-LLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSS--L  141 (505)
Q Consensus        68 ~~~~~~~l~~l~l~~~~~~-~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~--l  141 (505)
                      ....++++++|++++|.+. .++.  ...+++|++|++   .++.+..++...|.++++|++|++++|.++. .|..  +
T Consensus        49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  125 (455)
T 3v47_A           49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL---DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF  125 (455)
T ss_dssp             TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC---TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred             HhccCccccEEECcCCcccceECcccccccccCCEEeC---CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence            3456889999999999884 5543  348999999999   5555666655556899999999999999986 4444  8


Q ss_pred             cCCCCCCeeEeeccCCCC--ccc-ccCCCCCcEEEccCCCCccc-chhhhCC--CCCCEEeeeCCCCCCccChhh-----
Q 037920          142 GLLSNLRTLSLDNCKLLD--ITV-VRDLKKLEILCLRGSNIKML-PIEVSEL--ARLRLLGLRDCRELEVIPANV-----  210 (505)
Q Consensus       142 ~~l~~L~~L~L~~~~l~~--~~~-i~~l~~L~~L~l~~~~l~~l-p~~i~~l--~~L~~L~l~~~~~~~~~~~~~-----  210 (505)
                      ..+++|++|++++|.+..  +.. ++.+++|++|++++|.++.. |..+..+  .+|+.|++++|. +..++...     
T Consensus       126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~  204 (455)
T 3v47_A          126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEK  204 (455)
T ss_dssp             TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHH
T ss_pred             cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccc
Confidence            899999999999999988  443 88999999999999998866 4556655  789999998844 44443221     


Q ss_pred             ---hcCCCCccEEEeeCCCCCCchhhhhccccccccC---CCCcCEEEeecccCCCCC----------CCC----CCCCC
Q 037920          211 ---LSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE---LKHLTSLELHIKDVNTLP----------RGL----FFPKL  270 (505)
Q Consensus       211 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~l~----------~~~----~~~~L  270 (505)
                         +..+++|++|++++|.+..       ..+..+..   ..+|+.|+++++......          ...    ..++|
T Consensus       205 ~~~~~~~~~L~~L~Ls~n~l~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  277 (455)
T 3v47_A          205 CGNPFKNTSITTLDLSGNGFKE-------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV  277 (455)
T ss_dssp             HCCTTTTCEEEEEECTTSCCCH-------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred             cccccccceeeeEecCCCcccc-------cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence               2356889999999998843       33333333   377888888876432110          000    13567


Q ss_pred             cEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC
Q 037920          271 QRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN  350 (505)
Q Consensus       271 ~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~  350 (505)
                      +.+++..+.                 ...........+++|+.|++++|  ......|..+  ..+++|++|++++|.-.
T Consensus       278 ~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          278 KTCDLSKSK-----------------IFALLKSVFSHFTDLEQLTLAQN--EINKIDDNAF--WGLTHLLKLNLSQNFLG  336 (455)
T ss_dssp             CEEECCSSC-----------------CCEECTTTTTTCTTCCEEECTTS--CCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred             eEEEecCcc-----------------ccccchhhcccCCCCCEEECCCC--cccccChhHh--cCcccCCEEECCCCccC
Confidence            777664221                 11111112233789999999998  4444445566  67899999999998611


Q ss_pred             CccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccc
Q 037920          351 PAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRV  430 (505)
Q Consensus       351 ~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~  430 (505)
                      .      +                   .......+++|++|++++|++..+.+..        +..+++|++|++++|. 
T Consensus       337 ~------~-------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~-  382 (455)
T 3v47_A          337 S------I-------------------DSRMFENLDKLEVLDLSYNHIRALGDQS--------FLGLPNLKELALDTNQ-  382 (455)
T ss_dssp             E------E-------------------CGGGGTTCTTCCEEECCSSCCCEECTTT--------TTTCTTCCEEECCSSC-
T ss_pred             C------c-------------------ChhHhcCcccCCEEECCCCcccccChhh--------ccccccccEEECCCCc-
Confidence            0      0                   0111235788999999988877764321        6778899999998876 


Q ss_pred             cccceecccccccccccccccccccccccCcc
Q 037920          431 LEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       431 l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      ++.+.  ...      ...+++|+.|++++++
T Consensus       383 l~~~~--~~~------~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          383 LKSVP--DGI------FDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CSCCC--TTT------TTTCTTCCEEECCSSC
T ss_pred             cccCC--HhH------hccCCcccEEEccCCC
Confidence            66552  211      2456888888888766

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=222.21  Aligned_cols=301  Identities=18%  Similarity=0.163  Sum_probs=235.3

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS  139 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  139 (505)
                      ++..++. ...+++++|++++|.+..++.  ...+++|++|++   .++.+..+++..|.++++|++|++++|.++.+|.
T Consensus        22 ~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           22 RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL---NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEEC---CCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence            3445543 456789999999999987753  348999999999   5566666655567999999999999999999876


Q ss_pred             -cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920          140 -SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLS  215 (505)
Q Consensus       140 -~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  215 (505)
                       .+..+++|++|++++|.+..  +..+..+++|++|++++|.++.+ +..+..+++|++|++++ +.+..++...+..++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~  176 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLH  176 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCT
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccC
Confidence             47899999999999999988  57889999999999999999877 45789999999999999 566778876689999


Q ss_pred             CccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccC-CCCCCCCC-CCCCcEEEEEEcceeecccccceEEec
Q 037920          216 HLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV-NTLPRGLF-FPKLQRYKIHIGGYYYAGVWRRELKIC  293 (505)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~  293 (505)
                      +|+.|++++|.+.       +..+..+..+++|+.|++++|.. ..++.... ..+|+.|++..+.              
T Consensus       177 ~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--------------  235 (477)
T 2id5_A          177 GLIVLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN--------------  235 (477)
T ss_dssp             TCCEEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC--------------
T ss_pred             CCcEEeCCCCcCc-------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc--------------
Confidence            9999999999884       34456789999999999998764 45665544 5689999886321              


Q ss_pred             CCCCccchhhHHHHhcceeEEeecCCCCCCcchhh-hhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhh
Q 037920          294 PDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFV-NELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILK  372 (505)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~  372 (505)
                         -...+......+++|+.|++++|  . +..++ ..+  ..+++|++|++++|...                     +
T Consensus       236 ---l~~~~~~~~~~l~~L~~L~Ls~n--~-l~~~~~~~~--~~l~~L~~L~L~~n~l~---------------------~  286 (477)
T 2id5_A          236 ---LTAVPYLAVRHLVYLRFLNLSYN--P-ISTIEGSML--HELLRLQEIQLVGGQLA---------------------V  286 (477)
T ss_dssp             ---CCSCCHHHHTTCTTCCEEECCSS--C-CCEECTTSC--TTCTTCCEEECCSSCCS---------------------E
T ss_pred             ---ccccCHHHhcCccccCeeECCCC--c-CCccChhhc--cccccCCEEECCCCccc---------------------e
Confidence               11233334445899999999998  3 33444 344  77899999999998611                     1


Q ss_pred             ccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEcccc
Q 037920          373 VNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       373 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~  429 (505)
                      .    .......+++|+.|++++|+++.++...        +..+++|++|++++++
T Consensus       287 ~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          287 V----EPYAFRGLNYLRVLNVSGNQLTTLEESV--------FHSVGNLETLILDSNP  331 (477)
T ss_dssp             E----CTTTBTTCTTCCEEECCSSCCSCCCGGG--------BSCGGGCCEEECCSSC
T ss_pred             E----CHHHhcCcccCCEEECCCCcCceeCHhH--------cCCCcccCEEEccCCC
Confidence            0    0112236889999999999888875432        5778999999999876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=7.4e-25  Score=233.58  Aligned_cols=388  Identities=17%  Similarity=0.156  Sum_probs=227.7

Q ss_pred             ccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCC
Q 037920           69 ESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLS  145 (505)
Q Consensus        69 ~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~  145 (505)
                      ...++++++|++++|.+..++..  ..+++|++|++   .++.+..+|...|.++++|++|++++|.++.++ ..++.++
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL---QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC---CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence            45678999999999999777543  28999999999   666677888776789999999999999998876 5789999


Q ss_pred             CCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-h--hCCCCCCEEeeeCCCCCCccChhhhcCC------
Q 037920          146 NLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-V--SELARLRLLGLRDCRELEVIPANVLSNL------  214 (505)
Q Consensus       146 ~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~~~~~~~~~~~~l------  214 (505)
                      +|++|++++|.+..  +..++++++|++|++++|.++.++.. +  ..+++|++|++++| .+..++...+..+      
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  200 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGL  200 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEE
T ss_pred             CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhh
Confidence            99999999999887  57788999999999999998877543 3  35688999999885 4444443324433      


Q ss_pred             ---------------------CCccEEEeeCCCCCCchhhhhccccccccCCCC--cCEEEeecccCCCCCC-CCC-CCC
Q 037920          215 ---------------------SHLEELYIGYNSFGKWEVEMEGVKNASLHELKH--LTSLELHIKDVNTLPR-GLF-FPK  269 (505)
Q Consensus       215 ---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~l~~-~~~-~~~  269 (505)
                                           ++|+.|++++|.+       .+..+..+..++.  |+.|++++|.+..++. .+. +++
T Consensus       201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l-------~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (680)
T 1ziw_A          201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-------STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ  273 (680)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC-------CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hccccccChhhHHHHHHHhhhccccEEEccCCcc-------cccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence                                 3455555555544       2333444555543  7777777776664432 222 666


Q ss_pred             CcEEEEEEcceeeccc-------ccceEEecCC---C-----Cccc-hhhHHHHhcceeEEeecCCCCCCcchhhhhhhc
Q 037920          270 LQRYKIHIGGYYYAGV-------WRRELKICPD---S-----KIRL-KDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAK  333 (505)
Q Consensus       270 L~~L~~~~~~~~~~~~-------~~~~l~l~~~---~-----~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  333 (505)
                      |+.|++..+.......       .-..+.+...   +     .++. .......+++|+.|++++|  ......+..+  
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~--  349 (680)
T 1ziw_A          274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN--DIPGIKSNMF--  349 (680)
T ss_dssp             CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC--CBCCCCTTTT--
T ss_pred             ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC--ccCCCChhHh--
Confidence            6666664332111000       0000222210   0     0000 0001123677888888887  3222333344  


Q ss_pred             cCCCCccEEEEeCCCC----CCccccccc---cchhcchhhhhhhhcccccccccccccccccccccccccccc-ccccc
Q 037920          334 VGPSQLKHLHIWNHPP----NPAESKRRE---ESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVER-IWQSH  405 (505)
Q Consensus       334 ~~l~~L~~L~l~~~~~----~~~~~l~~L---~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~  405 (505)
                      ..+++|++|++++|..    +....+..+   .++.+++..+.+.+....    ....+++|+.|++++|.+.. ++...
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~  425 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD----AFSWLGHLEVLDLGLNEIGQELTGQE  425 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred             ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh----hhhCCCCCCEEeCCCCcCccccCccc
Confidence            6678888888877741    111111111   233444444444432111    11346677777777775543 21110


Q ss_pred             eeeccCccccccccccEEEEccccccccceeccccc-------------------ccccccccccccccccccCcccccc
Q 037920          406 VAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQE-------------------ERKNSIVIFPQLQYLKMDDLEKLRN  466 (505)
Q Consensus       406 ~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~-------------------~~~~~~~~~p~L~~L~l~~~~~L~~  466 (505)
                              +..+++|++|++++|. +..+.. ....                   ........+++|+.|+++++. +..
T Consensus       426 --------~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~  494 (680)
T 1ziw_A          426 --------WRGLENIFEIYLSYNK-YLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IAN  494 (680)
T ss_dssp             --------GTTCTTCCEEECCSCS-EEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCC
T ss_pred             --------ccCcccccEEecCCCC-cceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCc
Confidence                    4445555555555554 222210 0000                   000123455677777777764 443


Q ss_pred             cccCCcccccCCCccceecccC
Q 037920          467 FCTGDVDILEFPSLKELIINRC  488 (505)
Q Consensus       467 ~~~~~~~~~~~~~L~~L~i~~C  488 (505)
                      ++.  ..+..+++|+.|+++++
T Consensus       495 i~~--~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          495 IND--DMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             CCT--TTTTTCTTCCEEECCSS
T ss_pred             CCh--hhhccccccCEEeCCCC
Confidence            322  23566788888888877

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.6e-25  Score=232.88  Aligned_cols=301  Identities=17%  Similarity=0.214  Sum_probs=181.8

Q ss_pred             cCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCC
Q 037920           72 IKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLR  148 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~  148 (505)
                      +.+++.++++++.+..+|...  .+++|++|++   .++.+..++...|..+++|++|++++|.++.+|+ .++.+++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL---NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC---CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            456677777777666666532  5667777777   4444555554445667777777777777666543 356677777


Q ss_pred             eeEeeccCCCC-cc-cccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920          149 TLSLDNCKLLD-IT-VVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN  225 (505)
Q Consensus       149 ~L~L~~~~l~~-~~-~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  225 (505)
                      +|++++|.+.. |. .++.+++|++|++++|.++.++ ..+.++++|++|++++ +.+..++   ++.+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccC
Confidence            77777776666 43 3466777777777777666553 3466667777777766 3344443   355666777777666


Q ss_pred             CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHH
Q 037920          226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI  305 (505)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~  305 (505)
                      .+..            +...++|+.|++++|.+..++... .++|+.|++..+                  .+..+.++.
T Consensus       203 ~l~~------------l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n------------------~l~~~~~l~  251 (597)
T 3oja_B          203 LLST------------LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHN------------------NLTDTAWLL  251 (597)
T ss_dssp             CCSE------------EECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSS------------------CCCCCGGGG
T ss_pred             cccc------------ccCCchhheeeccCCccccccccc-CCCCCEEECCCC------------------CCCCChhhc
Confidence            5532            333456777777777666555443 355666655321                  111112222


Q ss_pred             HHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccc
Q 037920          306 VQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTL  385 (505)
Q Consensus       306 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~  385 (505)
                       .+++|+.|++++|  ......|..+  ..+++|+.|++++|.-                     .+     +......+
T Consensus       252 -~l~~L~~L~Ls~N--~l~~~~~~~~--~~l~~L~~L~Ls~N~l---------------------~~-----l~~~~~~l  300 (597)
T 3oja_B          252 -NYPGLVEVDLSYN--ELEKIMYHPF--VKMQRLERLYISNNRL---------------------VA-----LNLYGQPI  300 (597)
T ss_dssp             -GCTTCSEEECCSS--CCCEEESGGG--TTCSSCCEEECTTSCC---------------------CE-----EECSSSCC
T ss_pred             -cCCCCCEEECCCC--ccCCCCHHHh--cCccCCCEEECCCCCC---------------------CC-----CCcccccC
Confidence             2667777777776  3334445555  5677777777777651                     11     11112347


Q ss_pred             cccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          386 PKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       386 ~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      |+|+.|++++|.+..++..         +..+++|++|++++|. ++.+.           ...+++|+.|++++++
T Consensus       301 ~~L~~L~Ls~N~l~~i~~~---------~~~l~~L~~L~L~~N~-l~~~~-----------~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          301 PTLKVLDLSHNHLLHVERN---------QPQFDRLENLYLDHNS-IVTLK-----------LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TTCCEEECCSSCCCCCGGG---------HHHHTTCSEEECCSSC-CCCCC-----------CCTTCCCSEEECCSSC
T ss_pred             CCCcEEECCCCCCCccCcc---------cccCCCCCEEECCCCC-CCCcC-----------hhhcCCCCEEEeeCCC
Confidence            7888888888877666443         5677888888888876 44331           2345778888887766

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.3e-25  Score=232.14  Aligned_cols=305  Identities=15%  Similarity=0.209  Sum_probs=239.0

Q ss_pred             CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC-c-ccccCCCC
Q 037920           92 VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKK  168 (505)
Q Consensus        92 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~  168 (505)
                      ..+.+++.+++   .++.+..+|..+|..+++|++|++++|.++.++ ..+..+++|++|++++|.+.. + ..++.+++
T Consensus        48 l~l~~l~~l~l---~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           48 ITLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  124 (597)
T ss_dssp             GGGCCCSEEEE---SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccCCCceEEEe---eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence            36789999999   777888999999999999999999999999865 489999999999999999988 4 66799999


Q ss_pred             CcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCC
Q 037920          169 LEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKH  247 (505)
Q Consensus       169 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  247 (505)
                      |++|++++|.++.+|.. ++++++|++|++++| .+..++...++.+++|++|++++|.+...          .+..+++
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~l~~  193 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPS  193 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC----------CGGGCTT
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc----------Chhhhhh
Confidence            99999999999999876 589999999999995 55566654489999999999999988542          2567889


Q ss_pred             cCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchh
Q 037920          248 LTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYF  327 (505)
Q Consensus       248 L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  327 (505)
                      |+.|++++|.+..++.   ..+|+.|+++.+....                 .+.   ...++|+.|++++|.   +.. 
T Consensus       194 L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~-----------------~~~---~~~~~L~~L~L~~n~---l~~-  246 (597)
T 3oja_B          194 LFHANVSYNLLSTLAI---PIAVEELDASHNSINV-----------------VRG---PVNVELTILKLQHNN---LTD-  246 (597)
T ss_dssp             CSEEECCSSCCSEEEC---CTTCSEEECCSSCCCE-----------------EEC---SCCSCCCEEECCSSC---CCC-
T ss_pred             hhhhhcccCccccccC---CchhheeeccCCcccc-----------------ccc---ccCCCCCEEECCCCC---CCC-
Confidence            9999999998876543   5678888765322110                 000   114689999999982   333 


Q ss_pred             hhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccccccccccccccccee
Q 037920          328 VNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVA  407 (505)
Q Consensus       328 ~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  407 (505)
                      +.++  ..+++|+.|++++|.-                     .+.    .......+++|+.|++++|++..++..   
T Consensus       247 ~~~l--~~l~~L~~L~Ls~N~l---------------------~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~~---  296 (597)
T 3oja_B          247 TAWL--LNYPGLVEVDLSYNEL---------------------EKI----MYHPFVKMQRLERLYISNNRLVALNLY---  296 (597)
T ss_dssp             CGGG--GGCTTCSEEECCSSCC---------------------CEE----ESGGGTTCSSCCEEECTTSCCCEEECS---
T ss_pred             Chhh--ccCCCCCEEECCCCcc---------------------CCC----CHHHhcCccCCCEEECCCCCCCCCCcc---
Confidence            2455  6789999999999861                     111    111224689999999999988887543   


Q ss_pred             eccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceeccc
Q 037920          408 VMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINR  487 (505)
Q Consensus       408 v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~  487 (505)
                            ...+|+|++|++++|. ++.+  +..       ...+++|+.|+++++. +..++     +..+++|+.|++++
T Consensus       297 ------~~~l~~L~~L~Ls~N~-l~~i--~~~-------~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~  354 (597)
T 3oja_B          297 ------GQPIPTLKVLDLSHNH-LLHV--ERN-------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSH  354 (597)
T ss_dssp             ------SSCCTTCCEEECCSSC-CCCC--GGG-------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCS
T ss_pred             ------cccCCCCcEEECCCCC-CCcc--Ccc-------cccCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeC
Confidence                  5679999999999997 6655  332       3457999999999997 44432     56789999999999


Q ss_pred             Cc
Q 037920          488 CP  489 (505)
Q Consensus       488 C~  489 (505)
                      +|
T Consensus       355 N~  356 (597)
T 3oja_B          355 ND  356 (597)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=2.6e-24  Score=208.60  Aligned_cols=295  Identities=17%  Similarity=0.221  Sum_probs=200.5

Q ss_pred             CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEE
Q 037920           96 QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEIL  172 (505)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L  172 (505)
                      +++.+++   .......+|..+   .++|++|++++|.++.++. .+..+++|++|++++|.+..  +..++.+++|++|
T Consensus        32 ~l~~l~~---~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQC---SDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEEC---TTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEe---cCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            5666666   444455565533   3577788888888877654 67788888888888888777  4677888888888


Q ss_pred             EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      ++++|.++.+|..+.  ++|++|++++ +.+..++...+..+++|++|++++|.+..     .+..+..+..+++|+.|+
T Consensus       106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          106 YLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             ECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEE
T ss_pred             ECCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhccCCCCcCEEE
Confidence            888888887776554  6888888887 45666666657888888888888887743     234456778888899999


Q ss_pred             eecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920          253 LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA  332 (505)
Q Consensus       253 l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  332 (505)
                      +++|.+..+|...                                          .++|+.|++++|  ......+..+ 
T Consensus       178 l~~n~l~~l~~~~------------------------------------------~~~L~~L~l~~n--~l~~~~~~~~-  212 (330)
T 1xku_A          178 IADTNITTIPQGL------------------------------------------PPSLTELHLDGN--KITKVDAASL-  212 (330)
T ss_dssp             CCSSCCCSCCSSC------------------------------------------CTTCSEEECTTS--CCCEECTGGG-
T ss_pred             CCCCccccCCccc------------------------------------------cccCCEEECCCC--cCCccCHHHh-
Confidence            9888887776542                                          356777777777  3333334555 


Q ss_pred             ccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCc
Q 037920          333 KVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCV  412 (505)
Q Consensus       333 ~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~  412 (505)
                       ..+++|++|++++|.-.                     +.. .   .....+++|++|++++|++..++..        
T Consensus       213 -~~l~~L~~L~Ls~n~l~---------------------~~~-~---~~~~~l~~L~~L~L~~N~l~~lp~~--------  258 (330)
T 1xku_A          213 -KGLNNLAKLGLSFNSIS---------------------AVD-N---GSLANTPHLRELHLNNNKLVKVPGG--------  258 (330)
T ss_dssp             -TTCTTCCEEECCSSCCC---------------------EEC-T---TTGGGSTTCCEEECCSSCCSSCCTT--------
T ss_pred             -cCCCCCCEEECCCCcCc---------------------eeC-h---hhccCCCCCCEEECCCCcCccCChh--------
Confidence             67888888888887611                     000 0   1123578888899988887776543        


Q ss_pred             cccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccC
Q 037920          413 SNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRC  488 (505)
Q Consensus       413 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C  488 (505)
                       +..+++|++|++++|. ++.+....... . ......+.|+.|++.+.| +..+...|..+..+++++.++++++
T Consensus       259 -l~~l~~L~~L~l~~N~-i~~~~~~~f~~-~-~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          259 -LADHKYIQVVYLHNNN-ISAIGSNDFCP-P-GYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             -TTTCSSCCEEECCSSC-CCCCCTTSSSC-S-SCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             -hccCCCcCEEECCCCc-CCccChhhcCC-c-ccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence             6778889999999886 66663211110 0 112235788888998888 3333333445777888999988875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=8.5e-25  Score=212.15  Aligned_cols=296  Identities=17%  Similarity=0.214  Sum_probs=198.7

Q ss_pred             CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEE
Q 037920           96 QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEIL  172 (505)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L  172 (505)
                      +++.+++   .......+|..+   .++|++|++++|.++.++ ..+..+++|++|++++|.+..  +..++.+++|++|
T Consensus        34 ~l~~l~~---~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQC---SDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEEC---CSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEEC---CCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            5777777   455556666644   367888888888887754 467888888888888888777  4678888888888


Q ss_pred             EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      ++++|.++.+|..+.  ++|++|++++ +.+..++...+..+++|++|++++|.+..     .+..+..+..+ +|+.|+
T Consensus       108 ~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l-~L~~L~  178 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEPGAFDGL-KLNYLR  178 (332)
T ss_dssp             ECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBG-----GGSCTTSSCSC-CCSCCB
T ss_pred             ECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCcccc-----CCCCcccccCC-ccCEEE
Confidence            888888888776554  7888888887 55666666557888888888888887743     12345566666 888888


Q ss_pred             eecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920          253 LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA  332 (505)
Q Consensus       253 l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  332 (505)
                      +++|.+..+|...                                          .++|+.|++++|  ......+..+ 
T Consensus       179 l~~n~l~~l~~~~------------------------------------------~~~L~~L~l~~n--~i~~~~~~~l-  213 (332)
T 2ft3_A          179 ISEAKLTGIPKDL------------------------------------------PETLNELHLDHN--KIQAIELEDL-  213 (332)
T ss_dssp             CCSSBCSSCCSSS------------------------------------------CSSCSCCBCCSS--CCCCCCTTSS-
T ss_pred             CcCCCCCccCccc------------------------------------------cCCCCEEECCCC--cCCccCHHHh-
Confidence            8888887777652                                          256677777776  2222233444 


Q ss_pred             ccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCc
Q 037920          333 KVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCV  412 (505)
Q Consensus       333 ~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~  412 (505)
                       ..+++|+.|++++|.-...                     . .   .....+++|+.|++++|++..++..        
T Consensus       214 -~~l~~L~~L~L~~N~l~~~---------------------~-~---~~~~~l~~L~~L~L~~N~l~~lp~~--------  259 (332)
T 2ft3_A          214 -LRYSKLYRLGLGHNQIRMI---------------------E-N---GSLSFLPTLRELHLDNNKLSRVPAG--------  259 (332)
T ss_dssp             -TTCTTCSCCBCCSSCCCCC---------------------C-T---TGGGGCTTCCEEECCSSCCCBCCTT--------
T ss_pred             -cCCCCCCEEECCCCcCCcC---------------------C-h---hHhhCCCCCCEEECCCCcCeecChh--------
Confidence             6678888888888751110                     0 0   0123578888888888887777543        


Q ss_pred             cccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCcc
Q 037920          413 SNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPE  490 (505)
Q Consensus       413 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~  490 (505)
                       +..+++|++|+++++. ++.+.... .... .....+++|+.|++.+++ +..+...+..+..+++|+.++++++.+
T Consensus       260 -l~~l~~L~~L~l~~N~-l~~~~~~~-~~~~-~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~~  332 (332)
T 2ft3_A          260 -LPDLKLLQVVYLHTNN-ITKVGVND-FCPV-GFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYKK  332 (332)
T ss_dssp             -GGGCTTCCEEECCSSC-CCBCCTTS-SSCS-SCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred             -hhcCccCCEEECCCCC-CCccChhH-cccc-ccccccccccceEeecCc-ccccccCcccccccchhhhhhcccccC
Confidence             6778889999998886 66663211 1110 011225788999999888 332222344577889999999988753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.6e-24  Score=225.54  Aligned_cols=356  Identities=14%  Similarity=0.101  Sum_probs=229.8

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS  139 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  139 (505)
                      +++.++. ...+++++|++++|.+..++.  ...+++|++|++   +++.+..+++..|.++++|++|++++|.++.+|.
T Consensus        42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~  117 (562)
T 3a79_B           42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRL---SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC  117 (562)
T ss_dssp             CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEEC---CSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred             CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEEC---CCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc
Confidence            3455553 345899999999999988874  449999999999   6666777766667999999999999999999987


Q ss_pred             cccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCC--CEEeeeCCCC--CCccChhhhc
Q 037920          140 SLGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARL--RLLGLRDCRE--LEVIPANVLS  212 (505)
Q Consensus       140 ~l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~~~~  212 (505)
                      .  .+++|++|++++|.+..   |..++++++|++|++++|.++..  .+..+++|  ++|++++|..  ....|.. +.
T Consensus       118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~  192 (562)
T 3a79_B          118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQ  192 (562)
T ss_dssp             C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EE
T ss_pred             c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cc
Confidence            7  89999999999999887   37899999999999999988753  44555555  9999988544  2222221 22


Q ss_pred             --------------------------CCC---------------------------------------------------
Q 037920          213 --------------------------NLS---------------------------------------------------  215 (505)
Q Consensus       213 --------------------------~l~---------------------------------------------------  215 (505)
                                                .++                                                   
T Consensus       193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~  272 (562)
T 3a79_B          193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF  272 (562)
T ss_dssp             ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred             ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence                                      222                                                   


Q ss_pred             ----CccEEEeeCCCCCCchhhhhccccccc-----cCCCCcCEEEeecccCCCCCCCCC-----CCCCcEEEEEEccee
Q 037920          216 ----HLEELYIGYNSFGKWEVEMEGVKNASL-----HELKHLTSLELHIKDVNTLPRGLF-----FPKLQRYKIHIGGYY  281 (505)
Q Consensus       216 ----~L~~L~l~~~~~~~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~l~~~~~-----~~~L~~L~~~~~~~~  281 (505)
                          +|++|++++|.+       .+.+|..+     .+++.|+.+++..+.+ .+|....     ..+++.|.+..+...
T Consensus       273 ~~~~~L~~L~l~~n~l-------~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~  344 (562)
T 3a79_B          273 FWPRPVEYLNIYNLTI-------TERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFI  344 (562)
T ss_dssp             HTTSSEEEEEEEEEEE-------CSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             hhcccccEEEEeccEe-------eccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcc
Confidence                344444444443       24455554     4454444444444443 3331100     122344443322111


Q ss_pred             ecc---c--ccceEEecCCCCcc-chhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC---CCc
Q 037920          282 YAG---V--WRRELKICPDSKIR-LKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP---NPA  352 (505)
Q Consensus       282 ~~~---~--~~~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~---~~~  352 (505)
                      ...   .  .-..+.+..+.-.. .+..+ ..+++|+.|++++|....+..+|..+  ..+++|++|++++|.-   ++.
T Consensus       345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             CCCCCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTT--TTCTTCCEEECTTSCCBSCCSS
T ss_pred             cccCccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhh--cCCCCCCEEECCCCcCCCccCh
Confidence            000   0  00002222211111 12222 23788999999998333333555556  7789999999999873   222


Q ss_pred             ccccccc-chhcchhhhhhhhccccccccccccc-cccccccccccccccccccceeeccCccccccccccEEEEccccc
Q 037920          353 ESKRREE-STDVMQSHEIILKVNVNALFVEKVTL-PKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRV  430 (505)
Q Consensus       353 ~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~  430 (505)
                      ..+..+. ++.++++.+.+.+....       .+ ++|+.|++++|+++.++.+         +..+++|++|++++|. 
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~-------~l~~~L~~L~L~~N~l~~ip~~---------~~~l~~L~~L~L~~N~-  484 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHNNRIMSIPKD---------VTHLQALQELNVASNQ-  484 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGS-------SCCTTCSEEECCSSCCCCCCTT---------TTSSCCCSEEECCSSC-
T ss_pred             hhhcCcccCCEEECCCCCCCcchhh-------hhcCcCCEEECCCCcCcccChh---------hcCCCCCCEEECCCCC-
Confidence            2333333 45666666666552221       23 7999999999999888654         5689999999999987 


Q ss_pred             cccceecccccccccccccccccccccccCcc
Q 037920          431 LEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       431 l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      ++.+  +...      ...+++|+.|++++++
T Consensus       485 l~~l--~~~~------~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          485 LKSV--PDGV------FDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCCC--CTTS------TTTCTTCCCEECCSCC
T ss_pred             CCCC--CHHH------HhcCCCCCEEEecCCC
Confidence            7766  3321      3456999999999877

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=2.5e-24  Score=234.35  Aligned_cols=172  Identities=17%  Similarity=0.143  Sum_probs=138.3

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCc-cC-cccccCCCCCCeeEee
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLM-SL-PSSLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~L~  153 (505)
                      +.++.+++.++.+|.  -.+++++|++   +++.+..++...|.++++|++|++++|... .+ |..+.++++|++|+|+
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdL---s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLL---SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEE---ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEEC---CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            467888899999998  6789999999   455566665555799999999999999544 45 6789999999999999


Q ss_pred             ccCCCC--cccccCCCCCcEEEccCCCCcc-cchh--hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920          154 NCKLLD--ITVVRDLKKLEILCLRGSNIKM-LPIE--VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       154 ~~~l~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      +|.+..  |..++.+++|++|++++|+++. .|..  +.++++|++|++++|...+..+...++.+++|++|++++|.+.
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            999988  6899999999999999999885 4544  8999999999999965444334334899999999999999884


Q ss_pred             CchhhhhccccccccCC--CCcCEEEeecccCC
Q 037920          229 KWEVEMEGVKNASLHEL--KHLTSLELHIKDVN  259 (505)
Q Consensus       229 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~  259 (505)
                      .       ..+..+..+  ++|+.|+++.|.+.
T Consensus       162 ~-------~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          162 L-------VCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             C-------CCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             e-------eCHHHcccccCCccceEECCCCccc
Confidence            3       334455555  67777777777665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=2.4e-23  Score=219.95  Aligned_cols=141  Identities=21%  Similarity=0.205  Sum_probs=120.8

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS  139 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  139 (505)
                      ++..+|. ..+.++++|++++|.++.++..  .++++|++|++   +++.+..+++..|.++++|++|++++|.++.+|.
T Consensus        42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L---s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC---CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            5666664 4577899999999999988753  48999999999   6777888888888999999999999999999875


Q ss_pred             -cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccC
Q 037920          140 -SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIP  207 (505)
Q Consensus       140 -~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~  207 (505)
                       .|.++++|++|++++|.+.. + ..++++++|++|++++|.++.  .|..+..+++|++|++++| .+..++
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  189 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY  189 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEEC
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccc
Confidence             58999999999999999998 4 568999999999999999875  4778899999999999984 444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=4.5e-23  Score=208.17  Aligned_cols=303  Identities=19%  Similarity=0.165  Sum_probs=214.8

Q ss_pred             CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcE
Q 037920           92 VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI  171 (505)
Q Consensus        92 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~  171 (505)
                      ..+++|++|++   .++.+..+|.  +..+++|++|++++|.++.+|  ++.+++|++|++++|.+.+++ ++.+++|++
T Consensus        39 ~~l~~L~~L~L---s~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~  110 (457)
T 3bz5_A           39 EQLATLTSLDC---HNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTY  110 (457)
T ss_dssp             HHHTTCCEEEC---CSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred             hHcCCCCEEEc---cCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCE
Confidence            37899999999   5556666763  689999999999999999986  899999999999999998853 889999999


Q ss_pred             EEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEE
Q 037920          172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL  251 (505)
Q Consensus       172 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  251 (505)
                      |++++|+++.+|  ++++++|++|++++ +.+..++   ++.+++|++|++++|..       .+.+  .+..+++|+.|
T Consensus       111 L~L~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~-------~~~~--~~~~l~~L~~L  175 (457)
T 3bz5_A          111 LNCDTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKK-------ITKL--DVTPQTQLTTL  175 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSC-------CCCC--CCTTCTTCCEE
T ss_pred             EECCCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCc-------cccc--ccccCCcCCEE
Confidence            999999999886  88999999999999 4555564   68999999999999854       2333  47889999999


Q ss_pred             EeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhh
Q 037920          252 ELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL  331 (505)
Q Consensus       252 ~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l  331 (505)
                      ++++|.+..+| ...+++|+.|.+..+..               ...+    + ..+++|+.|++++|   .+..+|  +
T Consensus       176 ~ls~n~l~~l~-l~~l~~L~~L~l~~N~l---------------~~~~----l-~~l~~L~~L~Ls~N---~l~~ip--~  229 (457)
T 3bz5_A          176 DCSFNKITELD-VSQNKLLNRLNCDTNNI---------------TKLD----L-NQNIQLTFLDCSSN---KLTEID--V  229 (457)
T ss_dssp             ECCSSCCCCCC-CTTCTTCCEEECCSSCC---------------SCCC----C-TTCTTCSEEECCSS---CCSCCC--C
T ss_pred             ECCCCccceec-cccCCCCCEEECcCCcC---------------Ceec----c-ccCCCCCEEECcCC---cccccC--c
Confidence            99999999887 22388899888753211               1111    1 23789999999998   344455  4


Q ss_pred             hccCCCCccEEEEeCCCCCC--ccccccccchhcchhhhhhhhcccccccccccccccccccccccc-ccccccccceee
Q 037920          332 AKVGPSQLKHLHIWNHPPNP--AESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAV  408 (505)
Q Consensus       332 ~~~~l~~L~~L~l~~~~~~~--~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v  408 (505)
                        ..+++|+.|++++|.-..  ...+++|+...                    -...+|+.|++++| .+..++      
T Consensus       230 --~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~--------------------l~~n~L~~L~l~~n~~~~~~~------  281 (457)
T 3bz5_A          230 --TPLTQLTYFDCSVNPLTELDVSTLSKLTTLH--------------------CIQTDLLEIDLTHNTQLIYFQ------  281 (457)
T ss_dssp             --TTCTTCSEEECCSSCCSCCCCTTCTTCCEEE--------------------CTTCCCSCCCCTTCTTCCEEE------
T ss_pred             --cccCCCCEEEeeCCcCCCcCHHHCCCCCEEe--------------------ccCCCCCEEECCCCccCCccc------
Confidence              678999999999987211  11111111000                    01234455555555 222221      


Q ss_pred             ccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccC-----CcccccCCCccce
Q 037920          409 MSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTG-----DVDILEFPSLKEL  483 (505)
Q Consensus       409 ~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~-----~~~~~~~~~L~~L  483 (505)
                           ...+++|+.|++++|..++.+..  .          +++|+.|++++|++|+.+.-.     ...+..+++|+.|
T Consensus       282 -----~~~l~~L~~L~Ls~n~~l~~l~~--~----------~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L  344 (457)
T 3bz5_A          282 -----AEGCRKIKELDVTHNTQLYLLDC--Q----------AAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSL  344 (457)
T ss_dssp             -----CTTCTTCCCCCCTTCTTCCEEEC--T----------TCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEE
T ss_pred             -----ccccccCCEEECCCCcccceecc--C----------CCcceEechhhcccCCEEECCCCcccccccccCCcCcEE
Confidence                 46689999999999998887732  1          244555555555554433210     0025567777777


Q ss_pred             ecccC
Q 037920          484 IINRC  488 (505)
Q Consensus       484 ~i~~C  488 (505)
                      ++++.
T Consensus       345 ~l~~N  349 (457)
T 3bz5_A          345 SCVNA  349 (457)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            77664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=1.1e-22  Score=205.15  Aligned_cols=277  Identities=19%  Similarity=0.195  Sum_probs=160.8

Q ss_pred             cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeE
Q 037920           72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLS  151 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  151 (505)
                      ++++++|++++|.+..+|..  .++|+.|++   +++.+..++.    ..++|++|++++|.++.+| .++.+++|++|+
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l---~~n~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL--PQSLKSLLV---DNNNLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID  159 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEEC---CSSCCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCccccc--cCCCcEEEC---CCCccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence            46677777777777666643  467777777   4444444443    1257777777777777766 477777777777


Q ss_pred             eeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCc
Q 037920          152 LDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW  230 (505)
Q Consensus       152 L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  230 (505)
                      +++|.+.+ |..   ..+|++|++++|+++.+| .++++++|++|++++| .+..+|..    .++|++|++++|.+.  
T Consensus       160 l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~--  228 (454)
T 1jl5_A          160 VDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILE--  228 (454)
T ss_dssp             CCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCS--
T ss_pred             CCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCC--
Confidence            77777766 332   247777777777777766 5777777777777773 44445432    246777777777653  


Q ss_pred             hhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcc
Q 037920          231 EVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQG  310 (505)
Q Consensus       231 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~  310 (505)
                            .+| .+..+++|+.|++++|.+..+|..  +++|+.|++..+..                 ...+    ..+++
T Consensus       229 ------~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l-----------------~~l~----~~~~~  278 (454)
T 1jl5_A          229 ------ELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYL-----------------TDLP----ELPQS  278 (454)
T ss_dssp             ------SCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCC-----------------SCCC----CCCTT
T ss_pred             ------ccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcc-----------------cccC----cccCc
Confidence                  233 266777777777777777766654  56777766542210                 0011    11356


Q ss_pred             eeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccc-ccccchhcchhhhhhhhccccccccccccccccc
Q 037920          311 IEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESK-RREESTDVMQSHEIILKVNVNALFVEKVTLPKLE  389 (505)
Q Consensus       311 L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l-~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~  389 (505)
                      |+.|++++|   .+..++.     ..++|++|++++|.-.....+ ++  ++.++++.+.+.+..        ..+++|+
T Consensus       279 L~~L~ls~N---~l~~l~~-----~~~~L~~L~l~~N~l~~i~~~~~~--L~~L~Ls~N~l~~lp--------~~~~~L~  340 (454)
T 1jl5_A          279 LTFLDVSEN---IFSGLSE-----LPPNLYYLNASSNEIRSLCDLPPS--LEELNVSNNKLIELP--------ALPPRLE  340 (454)
T ss_dssp             CCEEECCSS---CCSEESC-----CCTTCCEEECCSSCCSEECCCCTT--CCEEECCSSCCSCCC--------CCCTTCC
T ss_pred             CCEEECcCC---ccCcccC-----cCCcCCEEECcCCcCCcccCCcCc--CCEEECCCCcccccc--------ccCCcCC
Confidence            777777776   2333321     125677777777652221111 11  223333333333210        1246666


Q ss_pred             cccccccccccccccceeeccCccccccccccEEEEcccc
Q 037920          390 NLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       390 ~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~  429 (505)
                      .|++++|+++.++.            .+++|++|++++|.
T Consensus       341 ~L~L~~N~l~~lp~------------~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          341 RLIASFNHLAEVPE------------LPQNLKQLHVEYNP  368 (454)
T ss_dssp             EEECCSSCCSCCCC------------CCTTCCEEECCSSC
T ss_pred             EEECCCCccccccc------------hhhhccEEECCCCC
Confidence            66666666555421            24666667666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=7e-23  Score=200.40  Aligned_cols=278  Identities=20%  Similarity=0.224  Sum_probs=204.5

Q ss_pred             ccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCe
Q 037920           71 AIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRT  149 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~  149 (505)
                      .++.....+.+++.++.+|... .++|++|++   .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~-~~~L~~L~l---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGL-TEAVKSLDL---SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTC-CTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcccccccc-cccCcEEEC---CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3444455788888888888643 358999999   66667777776678999999999999999886 456889999999


Q ss_pred             eEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920          150 LSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN  225 (505)
Q Consensus       150 L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  225 (505)
                      |++++|.+.. + ..++.+++|++|++++|+++.+|.  .+.++++|++|++++|..++.++...++.+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            9999999888 4 448899999999999999998876  68889999999999976677776555888999999999998


Q ss_pred             CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHH
Q 037920          226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI  305 (505)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~  305 (505)
                      .+       .+..+..+..+++|+.|++++|.+..+|.                                       .+.
T Consensus       185 ~l-------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---------------------------------------~~~  218 (353)
T 2z80_A          185 DL-------QSYEPKSLKSIQNVSHLILHMKQHILLLE---------------------------------------IFV  218 (353)
T ss_dssp             TC-------CEECTTTTTTCSEEEEEEEECSCSTTHHH---------------------------------------HHH
T ss_pred             Cc-------CccCHHHHhccccCCeecCCCCccccchh---------------------------------------hhh
Confidence            87       44556778889999999998887654332                                       233


Q ss_pred             HHhcceeEEeecCCCCCCcchhhhhhh-ccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccc
Q 037920          306 VQLQGIEDLGLSKLPEQDVDYFVNELA-KVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVT  384 (505)
Q Consensus       306 ~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~  384 (505)
                      ..+++|+.|++++|  ......+..+. ......++.+++.++.                +..+.+..     +......
T Consensus       219 ~~~~~L~~L~L~~n--~l~~~~~~~l~~~~~~~~l~~l~L~~~~----------------l~~~~l~~-----l~~~l~~  275 (353)
T 2z80_A          219 DVTSSVECLELRDT--DLDTFHFSELSTGETNSLIKKFTFRNVK----------------ITDESLFQ-----VMKLLNQ  275 (353)
T ss_dssp             HHTTTEEEEEEESC--BCTTCCCC------CCCCCCEEEEESCB----------------CCHHHHHH-----HHHHHHT
T ss_pred             hhcccccEEECCCC--ccccccccccccccccchhhcccccccc----------------ccCcchhh-----hHHHHhc
Confidence            44788888888887  22211111110 1345677778777764                11111111     1112246


Q ss_pred             ccccccccccccccccccccceeeccCccccccccccEEEEcccc
Q 037920          385 LPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       385 ~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~  429 (505)
                      +++|+.|++++|+++.++.+.        +..+++|++|++++|+
T Consensus       276 l~~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          276 ISGLLELEFSRNQLKSVPDGI--------FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSC
T ss_pred             ccCCCEEECCCCCCCccCHHH--------HhcCCCCCEEEeeCCC
Confidence            889999999999888776531        3678999999999887

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1.2e-22  Score=196.25  Aligned_cols=176  Identities=24%  Similarity=0.401  Sum_probs=135.6

Q ss_pred             CCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeee
Q 037920          120 RMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR  198 (505)
Q Consensus       120 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  198 (505)
                      ....++.|+++++.++.+|..+..+++|++|++++|.+.. |..++.+++|++|++++|.++.+|..+.++++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            4578899999999998888888889999999999998888 778889999999999999888888889999999999999


Q ss_pred             CCCCCCccChhhhc---------CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCC
Q 037920          199 DCRELEVIPANVLS---------NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPK  269 (505)
Q Consensus       199 ~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~  269 (505)
                      +|+..+.+|.. ++         .+++|++|++++|.+.        .+|..+..+++|+.|++++|.+..+|..+    
T Consensus       159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l----  225 (328)
T 4fcg_A          159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLSALGPAI----  225 (328)
T ss_dssp             EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCCCCCGGG----
T ss_pred             CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCCcCchhh----
Confidence            88888888765 44         3777888888777663        34556777777777777777766555431    


Q ss_pred             CcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          270 LQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       270 L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                                                          ..+++|+.|++++|  .....+|..+  ..+++|++|++++|.
T Consensus       226 ------------------------------------~~l~~L~~L~Ls~n--~~~~~~p~~~--~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          226 ------------------------------------HHLPKLEELDLRGC--TALRNYPPIF--GGRAPLKRLILKDCS  264 (328)
T ss_dssp             ------------------------------------GGCTTCCEEECTTC--TTCCBCCCCT--TCCCCCCEEECTTCT
T ss_pred             ------------------------------------ccCCCCCEEECcCC--cchhhhHHHh--cCCCCCCEEECCCCC
Confidence                                                12567777777776  5555666666  567777777777765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=2.4e-22  Score=194.12  Aligned_cols=220  Identities=20%  Similarity=0.268  Sum_probs=187.9

Q ss_pred             cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920           72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  150 (505)
                      ..+++.|++++|.+..+|... .+++|++|++   .++.+..+|..+ ..+++|++|++++|.++.+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L---~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTI---DAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEE---ESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEEC---CCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence            478999999999999888754 8999999999   445555888765 88999999999999999999999999999999


Q ss_pred             EeeccCCCC--cccccC---------CCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccE
Q 037920          151 SLDNCKLLD--ITVVRD---------LKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEE  219 (505)
Q Consensus       151 ~L~~~~l~~--~~~i~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  219 (505)
                      ++++|.+.+  |..++.         +++|++|++++|+++.+|..++++++|++|++++ +.+..+|.. ++.+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCE
Confidence            999988555  565554         9999999999999999999999999999999999 556678876 899999999


Q ss_pred             EEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCc
Q 037920          220 LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKI  298 (505)
Q Consensus       220 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~  298 (505)
                      |++++|.+       .+.+|..+..+++|+.|++++|.+. .+|..+                                 
T Consensus       234 L~Ls~n~~-------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~---------------------------------  273 (328)
T 4fcg_A          234 LDLRGCTA-------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI---------------------------------  273 (328)
T ss_dssp             EECTTCTT-------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG---------------------------------
T ss_pred             EECcCCcc-------hhhhHHHhcCCCCCCEEECCCCCchhhcchhh---------------------------------
Confidence            99999887       5677888999999999999987653 455431                                 


Q ss_pred             cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          299 RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                             ..+++|+.|++++|  ...+.+|.++  ..+++|+.+.+..+.
T Consensus       274 -------~~l~~L~~L~L~~n--~~~~~iP~~l--~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          274 -------HRLTQLEKLDLRGC--VNLSRLPSLI--AQLPANCIILVPPHL  312 (328)
T ss_dssp             -------GGCTTCCEEECTTC--TTCCCCCGGG--GGSCTTCEEECCGGG
T ss_pred             -------hcCCCCCEEeCCCC--CchhhccHHH--hhccCceEEeCCHHH
Confidence                   12788999999999  7888999998  789999999987653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.2e-21  Score=189.69  Aligned_cols=294  Identities=15%  Similarity=0.154  Sum_probs=193.2

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEe
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSL  152 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L  152 (505)
                      +++.++++++.+..+|... .++++.|++   .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDL---QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEEC---CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEEC---CCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            6888999998888887643 378999999   66667777776678999999999999999886 778999999999999


Q ss_pred             eccCCCC-cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCC-ccChhhhcCCCCccEEEeeCCCCCC
Q 037920          153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELE-VIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      ++|.+.. +..+.  ++|++|++++|.++.++. .+.++++|++|++++|.... ......+..+++|++|++++|.+..
T Consensus       108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            9999888 55554  789999999999988754 57889999999999854321 1333337889999999999988754


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ  309 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~  309 (505)
                      .        |..+.  ++|+.|++++|.+..++...                                      + ..++
T Consensus       186 l--------~~~~~--~~L~~L~l~~n~l~~~~~~~--------------------------------------~-~~l~  216 (330)
T 1xku_A          186 I--------PQGLP--PSLTELHLDGNKITKVDAAS--------------------------------------L-KGLN  216 (330)
T ss_dssp             C--------CSSCC--TTCSEEECTTSCCCEECTGG--------------------------------------G-TTCT
T ss_pred             C--------Ccccc--ccCCEEECCCCcCCccCHHH--------------------------------------h-cCCC
Confidence            3        33332  78999999998876543221                                      0 1145


Q ss_pred             ceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccc
Q 037920          310 GIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLE  389 (505)
Q Consensus       310 ~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~  389 (505)
                      +|+.|++++|  ......+..+  ..+++|++|++++|.-..                          +......+++|+
T Consensus       217 ~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~L~~N~l~~--------------------------lp~~l~~l~~L~  266 (330)
T 1xku_A          217 NLAKLGLSFN--SISAVDNGSL--ANTPHLRELHLNNNKLVK--------------------------VPGGLADHKYIQ  266 (330)
T ss_dssp             TCCEEECCSS--CCCEECTTTG--GGSTTCCEEECCSSCCSS--------------------------CCTTTTTCSSCC
T ss_pred             CCCEEECCCC--cCceeChhhc--cCCCCCCEEECCCCcCcc--------------------------CChhhccCCCcC
Confidence            6666666666  2222222234  456777777777765110                          001122466777


Q ss_pred             cccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCc
Q 037920          390 NLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDL  461 (505)
Q Consensus       390 ~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~  461 (505)
                      +|++++|+++.++...+...  ......+.|+.|++.+++ ++.+.....      ....+++|+.++++++
T Consensus       267 ~L~l~~N~i~~~~~~~f~~~--~~~~~~~~l~~l~l~~N~-~~~~~i~~~------~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          267 VVYLHNNNISAIGSNDFCPP--GYNTKKASYSGVSLFSNP-VQYWEIQPS------TFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             EEECCSSCCCCCCTTSSSCS--SCCTTSCCCSEEECCSSS-SCGGGSCGG------GGTTCCCGGGEEC---
T ss_pred             EEECCCCcCCccChhhcCCc--ccccccccccceEeecCc-ccccccCcc------ccccccceeEEEeccc
Confidence            77777776666644322000  002235677777777776 332211111      1234466666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=1.1e-22  Score=195.20  Aligned_cols=220  Identities=17%  Similarity=0.223  Sum_probs=133.2

Q ss_pred             CCCcEEEecCCCCc---cCCCCC-CCCCccEEEeeecC-CCCccccChhHHhCCCCccEEEEeCCcCc-cCcccccCCCC
Q 037920           73 KLYTSIVLHDIRTN---LLPEVV-ESPQLKLLFICADQ-ESSSLTIPNKFFERMMQVRVINLTNINLM-SLPSSLGLLSN  146 (505)
Q Consensus        73 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~  146 (505)
                      .++++|+++++.+.   .+|... .+++|++|++  .+ +...+.+|.. |..+++|++|++++|.++ .+|..+..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L--~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE--EEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeC--CCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            45677777777664   344333 6666666666  32 3333345544 356666666666666666 36666666666


Q ss_pred             CCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCC-CCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920          147 LRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELA-RLRLLGLRDCRELEVIPANVLSNLSHLEELYI  222 (505)
Q Consensus       147 L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  222 (505)
                      |++|++++|.+.+  |..++.+++|++|++++|+++ .+|..+..++ +|++|++++|...+.+|.. ++.++ |++|++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~L  204 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEEC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEEC
Confidence            6666666666653  556666666666666666666 5566666665 6666666664333344444 55555 666666


Q ss_pred             eCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchh
Q 037920          223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKD  302 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~  302 (505)
                      ++|.+       .+..+..+..+++|+.|++++|.+...+..+                                     
T Consensus       205 s~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------------  240 (313)
T 1ogq_A          205 SRNML-------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-------------------------------------  240 (313)
T ss_dssp             CSSEE-------EECCGGGCCTTSCCSEEECCSSEECCBGGGC-------------------------------------
T ss_pred             cCCcc-------cCcCCHHHhcCCCCCEEECCCCceeeecCcc-------------------------------------
Confidence            66655       3444556666666666666666554221110                                     


Q ss_pred             hHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          303 GLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       303 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                         ..+++|+.|++++|  .....+|.++  ..+++|++|++++|.
T Consensus       241 ---~~l~~L~~L~Ls~N--~l~~~~p~~l--~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          241 ---GLSKNLNGLDLRNN--RIYGTLPQGL--TQLKFLHSLNVSFNN  279 (313)
T ss_dssp             ---CCCTTCCEEECCSS--CCEECCCGGG--GGCTTCCEEECCSSE
T ss_pred             ---cccCCCCEEECcCC--cccCcCChHH--hcCcCCCEEECcCCc
Confidence               11567777777777  4444667666  667788888887775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=4.8e-22  Score=192.75  Aligned_cols=293  Identities=16%  Similarity=0.175  Sum_probs=198.1

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEe
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSL  152 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L  152 (505)
                      +++.++++++.+..+|... .+++++|++   .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDL---QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEEC---CCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5889999999998888654 478999999   56666777666678999999999999999985 678999999999999


Q ss_pred             eccCCCC-cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--cChhhhcCCCCccEEEeeCCCCC
Q 037920          153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV--IPANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      ++|.+.. +..+.  ++|++|++++|.++.+|. .+.++++|++|++++|. +..  .....+..+ +|++|++++|.+.
T Consensus       110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCC
Confidence            9999888 65555  899999999999998865 48899999999999954 332  333325666 8999999999875


Q ss_pred             CchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHh
Q 037920          229 KWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQL  308 (505)
Q Consensus       229 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~  308 (505)
                      ..        |..+.  ++|+.|++++|.+..++....                                       ..+
T Consensus       186 ~l--------~~~~~--~~L~~L~l~~n~i~~~~~~~l---------------------------------------~~l  216 (332)
T 2ft3_A          186 GI--------PKDLP--ETLNELHLDHNKIQAIELEDL---------------------------------------LRY  216 (332)
T ss_dssp             SC--------CSSSC--SSCSCCBCCSSCCCCCCTTSS---------------------------------------TTC
T ss_pred             cc--------Ccccc--CCCCEEECCCCcCCccCHHHh---------------------------------------cCC
Confidence            43        33333  689999999998877653211                                       014


Q ss_pred             cceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccc
Q 037920          309 QGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKL  388 (505)
Q Consensus       309 ~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L  388 (505)
                      ++|+.|++++|  ......+..+  ..+++|++|++++|.-.      .                    +......+++|
T Consensus       217 ~~L~~L~L~~N--~l~~~~~~~~--~~l~~L~~L~L~~N~l~------~--------------------lp~~l~~l~~L  266 (332)
T 2ft3_A          217 SKLYRLGLGHN--QIRMIENGSL--SFLPTLRELHLDNNKLS------R--------------------VPAGLPDLKLL  266 (332)
T ss_dssp             TTCSCCBCCSS--CCCCCCTTGG--GGCTTCCEEECCSSCCC------B--------------------CCTTGGGCTTC
T ss_pred             CCCCEEECCCC--cCCcCChhHh--hCCCCCCEEECCCCcCe------e--------------------cChhhhcCccC
Confidence            56666777766  2222222344  55677777777776511      0                    11112356777


Q ss_pred             ccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          389 ENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       389 ~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      +.|++++|+++.++...+  ..+......++|+.|++.+++ +........      ....+++|+.+++.++.
T Consensus       267 ~~L~l~~N~l~~~~~~~~--~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~------~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDF--CPVGFGVKRAYYNGISLFNNP-VPYWEVQPA------TFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSCCCBCCTTSS--SCSSCCSSSCCBSEEECCSSS-SCGGGSCGG------GGTTBCCSTTEEC----
T ss_pred             CEEECCCCCCCccChhHc--cccccccccccccceEeecCc-ccccccCcc------cccccchhhhhhccccc
Confidence            777777777776654322  011001225677888888877 332211111      13345777777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=3.8e-21  Score=193.90  Aligned_cols=326  Identities=21%  Similarity=0.215  Sum_probs=227.2

Q ss_pred             CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920           73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL  152 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L  152 (505)
                      .+++++++++|.+..+|..  .++|+.|++   +++.+..+|.    .+.+|++|++++|.++.+|..   .++|++|++
T Consensus        71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l---~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L  138 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL--PPHLESLVA---SCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGV  138 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEEC---CSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred             cCCCEEEecCCccccCCCC--cCCCCEEEc---cCCcCCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEEC
Confidence            3579999999999888874  579999999   5566666775    358999999999999887642   279999999


Q ss_pred             eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920          153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                      ++|.+.+++.++.+++|++|++++|+++.+|..+   .+|++|++++| .+..+|.  ++.+++|++|++++|.+...  
T Consensus       139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l--  210 (454)
T 1jl5_A          139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKL--  210 (454)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSC--
T ss_pred             cCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcC--
Confidence            9999988447999999999999999999887543   58999999994 5666774  89999999999999987542  


Q ss_pred             hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920          233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE  312 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~  312 (505)
                            |..   .++|+.|++++|.+..+|....+++|+.|++..+..                 ...+    ..+++|+
T Consensus       211 ------~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l-----------------~~l~----~~~~~L~  260 (454)
T 1jl5_A          211 ------PDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-----------------KTLP----DLPPSLE  260 (454)
T ss_dssp             ------CCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-----------------SSCC----SCCTTCC
T ss_pred             ------CCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcC-----------------Cccc----ccccccC
Confidence                  222   258999999999999888643488999988753211                 0111    1257899


Q ss_pred             EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccc-ccccchhcchhhhhhhhccccccccccccccccccc
Q 037920          313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESK-RREESTDVMQSHEIILKVNVNALFVEKVTLPKLENL  391 (505)
Q Consensus       313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l-~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L  391 (505)
                      .|++++|   .+..+|.     .+++|++|++++|.-...+.+ .+  ++.+++..+.+.+..        ..+++|+.|
T Consensus       261 ~L~l~~N---~l~~l~~-----~~~~L~~L~ls~N~l~~l~~~~~~--L~~L~l~~N~l~~i~--------~~~~~L~~L  322 (454)
T 1jl5_A          261 ALNVRDN---YLTDLPE-----LPQSLTFLDVSENIFSGLSELPPN--LYYLNASSNEIRSLC--------DLPPSLEEL  322 (454)
T ss_dssp             EEECCSS---CCSCCCC-----CCTTCCEEECCSSCCSEESCCCTT--CCEEECCSSCCSEEC--------CCCTTCCEE
T ss_pred             EEECCCC---cccccCc-----ccCcCCEEECcCCccCcccCcCCc--CCEEECcCCcCCccc--------CCcCcCCEE
Confidence            9999998   3444553     348999999999973222111 12  334555455444411        123589999


Q ss_pred             cccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCC
Q 037920          392 ELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGD  471 (505)
Q Consensus       392 ~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~  471 (505)
                      ++++|++..++.            .+++|++|++++|. ++.+  +.          .+++|++|++++++ +..++..|
T Consensus       323 ~Ls~N~l~~lp~------------~~~~L~~L~L~~N~-l~~l--p~----------~l~~L~~L~L~~N~-l~~l~~ip  376 (454)
T 1jl5_A          323 NVSNNKLIELPA------------LPPRLERLIASFNH-LAEV--PE----------LPQNLKQLHVEYNP-LREFPDIP  376 (454)
T ss_dssp             ECCSSCCSCCCC------------CCTTCCEEECCSSC-CSCC--CC----------CCTTCCEEECCSSC-CSSCCCCC
T ss_pred             ECCCCccccccc------------cCCcCCEEECCCCc-cccc--cc----------hhhhccEEECCCCC-CCcCCCCh
Confidence            999998877632            36899999999986 6665  22          24899999999886 44443334


Q ss_pred             cccccC-------------CCccceecccCcccee
Q 037920          472 VDILEF-------------PSLKELIINRCPEFLM  493 (505)
Q Consensus       472 ~~~~~~-------------~~L~~L~i~~C~~L~~  493 (505)
                      ..+..+             ++|+.|++++++ ++.
T Consensus       377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~  410 (454)
T 1jl5_A          377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE  410 (454)
T ss_dssp             TTCCEEECCC-------------------------
T ss_pred             HHHHhhhhcccccccccccCcCCEEECCCCc-CCc
Confidence            445555             889999999985 443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=1.6e-21  Score=206.02  Aligned_cols=149  Identities=19%  Similarity=0.242  Sum_probs=125.5

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~  154 (505)
                      ++++-++.+++.+|... .+++++|++   +++.+..+++..|.++++|++|++++|.++.+|+ .|.++++|++|+|++
T Consensus        34 ~~~~c~~~~l~~vP~~l-p~~~~~LdL---s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL-PFSTKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             TEEECTTSCCSSCCSSS-CTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCCcCccCCCC-CcCCCEEEe---eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence            45565666677887643 258999999   7777888888778999999999999999999765 689999999999999


Q ss_pred             cCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--cChhhhcCCCCccEEEeeCCCCCC
Q 037920          155 CKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV--IPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      |.+.. + ..++.+++|++|++++|+++.+|. .++++++|++|++++|. +..  .|.. ++.+++|++|++++|.+..
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence            99998 4 678999999999999999999875 58999999999999954 443  4554 7899999999999998865


Q ss_pred             c
Q 037920          230 W  230 (505)
Q Consensus       230 ~  230 (505)
                      .
T Consensus       188 ~  188 (635)
T 4g8a_A          188 I  188 (635)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=1.6e-22  Score=194.12  Aligned_cols=153  Identities=18%  Similarity=0.266  Sum_probs=100.5

Q ss_pred             CCccEEEeeecCCCCcc--ccChhHHhCCCCccEEEEeC-CcCcc-CcccccCCCCCCeeEeeccCCCC--cccccCCCC
Q 037920           95 PQLKLLFICADQESSSL--TIPNKFFERMMQVRVINLTN-INLMS-LPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKK  168 (505)
Q Consensus        95 ~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~~-l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~  168 (505)
                      .+++.|++  .++...+  .+|.. +.++++|++|++++ +.+.. +|..+..+++|++|++++|.+.+  |..++.+++
T Consensus        50 ~~l~~L~L--~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDL--SGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEE--ECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEEC--CCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            46777777  3444433  45554 36777777777774 66653 67777777777777777777764  566777777


Q ss_pred             CcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCC-CccEEEeeCCCCCCchhhhhccccccccCCC
Q 037920          169 LEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLS-HLEELYIGYNSFGKWEVEMEGVKNASLHELK  246 (505)
Q Consensus       169 L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  246 (505)
                      |++|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.++ +|++|++++|.+       .+..|..+..++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l-------~~~~~~~~~~l~  198 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL-------TGKIPPTFANLN  198 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE-------EEECCGGGGGCC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee-------eccCChHHhCCc
Confidence            777777777766 55667777777777777774433356655 56666 677777776665       445555566555


Q ss_pred             CcCEEEeecccCC
Q 037920          247 HLTSLELHIKDVN  259 (505)
Q Consensus       247 ~L~~L~l~~~~~~  259 (505)
                       |+.|++++|.+.
T Consensus       199 -L~~L~Ls~N~l~  210 (313)
T 1ogq_A          199 -LAFVDLSRNMLE  210 (313)
T ss_dssp             -CSEEECCSSEEE
T ss_pred             -ccEEECcCCccc
Confidence             666666665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=3.5e-20  Score=192.65  Aligned_cols=256  Identities=19%  Similarity=0.195  Sum_probs=196.4

Q ss_pred             CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920           73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL  152 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L  152 (505)
                      .+++.++++++.+..+|.... ++|+.|++   .++.+..+|.    .+++|++|++++|.++.+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L---~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP-AHITTLVI---PDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC-TTCSEEEE---CSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcCccChhhC-CCCcEEEe---cCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            358899999999998887544 89999999   5666667776    57899999999999998887   7799999999


Q ss_pred             eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920          153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                      ++|.+..++.  .+.+|+.|++++|+++.+|..   +++|++|++++| .+..+|.    .+++|+.|++++|.+..   
T Consensus       109 s~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~---  175 (622)
T 3g06_A          109 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS---  175 (622)
T ss_dssp             CSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC---
T ss_pred             cCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC---
Confidence            9999888333  678999999999999988864   488999999984 5666654    35789999999988743   


Q ss_pred             hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920          233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE  312 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~  312 (505)
                           +|   ..+++|+.|++++|.+..+|..  +++|+.|.+..+.                 ....+    ..+++|+
T Consensus       176 -----l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~-----------------l~~l~----~~~~~L~  224 (622)
T 3g06_A          176 -----LP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR-----------------LTSLP----ALPSGLK  224 (622)
T ss_dssp             -----CC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-----------------CSSCC----CCCTTCC
T ss_pred             -----Cc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCc-----------------ccccC----CCCCCCC
Confidence                 23   4468899999999999888865  6788887764221                 00111    1257899


Q ss_pred             EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccc
Q 037920          313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLE  392 (505)
Q Consensus       313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (505)
                      .|++++|   .++.+|     ..+++|+.|++++|.-.      .                     ++.  .+++|+.|+
T Consensus       225 ~L~Ls~N---~L~~lp-----~~l~~L~~L~Ls~N~L~------~---------------------lp~--~~~~L~~L~  267 (622)
T 3g06_A          225 ELIVSGN---RLTSLP-----VLPSELKELMVSGNRLT------S---------------------LPM--LPSGLLSLS  267 (622)
T ss_dssp             EEECCSS---CCSCCC-----CCCTTCCEEECCSSCCS------C---------------------CCC--CCTTCCEEE
T ss_pred             EEEccCC---ccCcCC-----CCCCcCcEEECCCCCCC------c---------------------CCc--ccccCcEEe
Confidence            9999987   444555     34688999999998611      1                     111  478899999


Q ss_pred             ccccccccccccceeeccCccccccccccEEEEcccc
Q 037920          393 LDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       393 l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~  429 (505)
                      +++|+++.++..         +..+++|+.|++++|+
T Consensus       268 Ls~N~L~~lp~~---------l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          268 VYRNQLTRLPES---------LIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCSSCCCSCCGG---------GGGSCTTCEEECCSCC
T ss_pred             CCCCCCCcCCHH---------HhhccccCEEEecCCC
Confidence            999988877543         7889999999999998

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=3.8e-21  Score=184.17  Aligned_cols=175  Identities=22%  Similarity=0.253  Sum_probs=106.6

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC---cccccCCCCCCeeEe
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL---PSSLGLLSNLRTLSL  152 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~l~~l~~L~~L~L  152 (505)
                      +.++.+++.++.+|... .++++.|++   .++.+..++..+|.++++|++|++++|.++.+   +..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L---~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLEL---ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEEC---CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            35666666666666432 356777777   44455566666566677777777777766643   445556677777777


Q ss_pred             eccCCCC-cccccCCCCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      ++|.+.. +..+..+++|++|++++|+++.++.  .+..+++|++|++++|. +...+...+..+++|++|++++|.+..
T Consensus        86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc
Confidence            7776666 5556667777777777776665543  56666777777776633 333333335666677777776665521


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCCC
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTL  261 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l  261 (505)
                            ...|..+..+++|+.|++++|.+..+
T Consensus       165 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~  190 (306)
T 2z66_A          165 ------NFLPDIFTELRNLTFLDLSQCQLEQL  190 (306)
T ss_dssp             ------GEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             ------ccchhHHhhCcCCCEEECCCCCcCCc
Confidence                  13455566666666666666665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=6e-21  Score=186.64  Aligned_cols=257  Identities=17%  Similarity=0.205  Sum_probs=195.8

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS  139 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  139 (505)
                      +++.++. ...+++++|++++|.+..++.  ...+++|++|++   .++.+..++...|.++++|++|++++|.++.+|.
T Consensus        42 ~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  117 (353)
T 2z80_A           42 SLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVL---TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS  117 (353)
T ss_dssp             TCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred             Ccccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEEC---CCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence            4555554 455799999999999988876  449999999999   5666677766667899999999999999999887


Q ss_pred             c-ccCCCCCCeeEeeccCCCC-cc--cccCCCCCcEEEccCC-CCccc-chhhhCCCCCCEEeeeCCCCCCcc-Chhhhc
Q 037920          140 S-LGLLSNLRTLSLDNCKLLD-IT--VVRDLKKLEILCLRGS-NIKML-PIEVSELARLRLLGLRDCRELEVI-PANVLS  212 (505)
Q Consensus       140 ~-l~~l~~L~~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~-~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~  212 (505)
                      . +..+++|++|++++|.+.. +.  .++.+++|++|++++| .++.+ +..+.++++|++|++++|. +..+ |.. ++
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-l~  195 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS-LK  195 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TT
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH-Hh
Confidence            6 8999999999999999988 44  6889999999999998 57777 4678999999999999954 4454 544 89


Q ss_pred             CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC-----CCCCCcEEEEEEcceeeccccc
Q 037920          213 NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL-----FFPKLQRYKIHIGGYYYAGVWR  287 (505)
Q Consensus       213 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-----~~~~L~~L~~~~~~~~~~~~~~  287 (505)
                      .+++|++|++++|.+...+.       ..+..+++|+.|++++|.+..++...     ....++.+++....        
T Consensus       196 ~l~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~--------  260 (353)
T 2z80_A          196 SIQNVSHLILHMKQHILLLE-------IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK--------  260 (353)
T ss_dssp             TCSEEEEEEEECSCSTTHHH-------HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB--------
T ss_pred             ccccCCeecCCCCccccchh-------hhhhhcccccEEECCCCccccccccccccccccchhhcccccccc--------
Confidence            99999999999998754432       23456899999999999987654321     14556666654211        


Q ss_pred             ceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          288 RELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       288 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                          +.+......+.++ ..+++|+.|++++|   .++.+|..+. ..+++|++|++++|+
T Consensus       261 ----l~~~~l~~l~~~l-~~l~~L~~L~Ls~N---~l~~i~~~~~-~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          261 ----ITDESLFQVMKLL-NQISGLLELEFSRN---QLKSVPDGIF-DRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ----CCHHHHHHHHHHH-HTCTTCCEEECCSS---CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             ----ccCcchhhhHHHH-hcccCCCEEECCCC---CCCccCHHHH-hcCCCCCEEEeeCCC
Confidence                0001111122233 33789999999998   5557776642 678999999999987

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=2.9e-23  Score=210.78  Aligned_cols=342  Identities=15%  Similarity=0.101  Sum_probs=192.1

Q ss_pred             cccCCCcEEEecCCCCc-----cCCCC-CCCCCccEEEeeecCCCCccccChhHHhCCC----CccEEEEeCCcCcc---
Q 037920           70 SAIKLYTSIVLHDIRTN-----LLPEV-VESPQLKLLFICADQESSSLTIPNKFFERMM----QVRVINLTNINLMS---  136 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~-----~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~---  136 (505)
                      ..++++++|++++|.+.     .++.. ..+++|++|++  +++......+..++..++    +|++|++++|.++.   
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL--RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC--TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC--CCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            34677888888888874     23332 26788888888  333332223344455565    68888888888773   


Q ss_pred             --CcccccCCCCCCeeEeeccCCCC--ccccc-----CCCCCcEEEccCCCCcc-----cchhhhCCCCCCEEeeeCCCC
Q 037920          137 --LPSSLGLLSNLRTLSLDNCKLLD--ITVVR-----DLKKLEILCLRGSNIKM-----LPIEVSELARLRLLGLRDCRE  202 (505)
Q Consensus       137 --l~~~l~~l~~L~~L~L~~~~l~~--~~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~  202 (505)
                        ++..+..+++|++|++++|.+..  +..+.     ..++|++|++++|+++.     ++..+..+++|++|++++|. 
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-  181 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-  181 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence              56777888888888888888765  33222     35678888888887763     35566777888888888754 


Q ss_pred             CCccChhhhc-----CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCC-----CCCC--CCCCC
Q 037920          203 LEVIPANVLS-----NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTL-----PRGL--FFPKL  270 (505)
Q Consensus       203 ~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-----~~~~--~~~~L  270 (505)
                      +.......+.     ..++|++|++++|.+.....   ..++..+..+++|+.|++++|.+...     +...  .+++|
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L  258 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC---RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL  258 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH---HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH---HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence            3332211121     35688888888887754321   23455667778888888888776431     1111  15566


Q ss_pred             cEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh---ccCCCCccEEEEeCC
Q 037920          271 QRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA---KVGPSQLKHLHIWNH  347 (505)
Q Consensus       271 ~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~l~~L~~L~l~~~  347 (505)
                      +.|++..+....            .+....+..+ ..+++|+.|++++|  ......+..+.   ....++|++|++++|
T Consensus       259 ~~L~L~~n~l~~------------~~~~~l~~~l-~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          259 RTLWIWECGITA------------KGCGDLCRVL-RAKESLKELSLAGN--ELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             CEEECTTSCCCH------------HHHHHHHHHH-HHCTTCCEEECTTC--CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             eEEECcCCCCCH------------HHHHHHHHHH-hhCCCcceEECCCC--CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence            666653211000            0000011122 22567777777776  22222222221   123357777777776


Q ss_pred             CCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCcccc-ccccccEEEEc
Q 037920          348 PPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNN-TFVRLQRIEIK  426 (505)
Q Consensus       348 ~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~-~l~~L~~L~l~  426 (505)
                      .                     +.+.....+......+++|++|++++|++.+.....+  ...  +. ..++|++|+++
T Consensus       324 ~---------------------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~--l~~~~~~L~~L~L~  378 (461)
T 1z7x_W          324 S---------------------FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL--CQG--LGQPGSVLRVLWLA  378 (461)
T ss_dssp             C---------------------CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH--HHH--HTSTTCCCCEEECT
T ss_pred             C---------------------CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH--HHH--HcCCCCceEEEECC
Confidence            5                     1111111111222346788888888887665422110  000  11 15688888888


Q ss_pred             cccccccceecccccccccccccccccccccccCcc
Q 037920          427 NCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       427 ~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      +|. ++..    +...+......+++|++|++++++
T Consensus       379 ~n~-i~~~----~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          379 DCD-VSDS----SCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TSC-CCHH----HHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCC-CChh----hHHHHHHHHHhCCCccEEECCCCC
Confidence            885 5421    111111123456888888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=4.6e-21  Score=181.61  Aligned_cols=205  Identities=23%  Similarity=0.362  Sum_probs=148.4

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCc-CccC-c
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN-LMSL-P  138 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~  138 (505)
                      ++.++. ...+++++|++++|.+..++.  ...+++|++|++   .++.+..++...|..+++|++|++++|. +..+ |
T Consensus        23 l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           23 LQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL---HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             CSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             cccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEEC---CCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence            444432 356788888888888877664  337888888888   5555556654456788888888888886 7765 5


Q ss_pred             ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920          139 SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLS  215 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  215 (505)
                      ..+..+++|++|++++|.+..  +..+..+++|++|++++|+++.++. .+.++++|++|++++ +.+..++...+..++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcc
Confidence            677888888888888888777  4667788888888888888887764 377788888888888 456666665577788


Q ss_pred             CccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC-CC-CCCCcEEEEEEcc
Q 037920          216 HLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG-LF-FPKLQRYKIHIGG  279 (505)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~-~~~L~~L~~~~~~  279 (505)
                      +|++|++++|.+       .+..+..+..+++|+.|++++|.+..++.. +. +++|+.|++..+.
T Consensus       178 ~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          178 SLDRLLLHQNRV-------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccCEEECCCCcc-------cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            888888888877       344456778888888888888887766643 22 5666666654433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=5.5e-20  Score=191.23  Aligned_cols=256  Identities=20%  Similarity=0.174  Sum_probs=180.1

Q ss_pred             CCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEc
Q 037920           95 PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCL  174 (505)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l  174 (505)
                      .++++|++   .++.+..+|..++   ++|++|++++|.++.+|.   .+++|++|++++|.++.++.  .+++|++|++
T Consensus        40 ~~l~~L~l---s~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNV---GESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEEC---CSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEE
T ss_pred             CCCcEEEe---cCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEEC
Confidence            46889999   6666778887653   789999999999998887   57899999999999888333  7789999999


Q ss_pred             cCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920          175 RGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH  254 (505)
Q Consensus       175 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  254 (505)
                      ++|+++.+|.   .+++|+.|++++ +.+..+|..    +++|++|++++|.+..+        |.   ..++|+.|+++
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~----l~~L~~L~Ls~N~l~~l--------~~---~~~~L~~L~L~  169 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLASL--------PA---LPSELCKLWAY  169 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSCC--------CC---CCTTCCEEECC
T ss_pred             cCCcCCCCCC---CCCCcCEEECCC-CCCCcCCCC----CCCCCEEECcCCcCCCc--------CC---ccCCCCEEECC
Confidence            9999998876   678899999988 556677753    48899999999887432        22   34678999999


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhcc
Q 037920          255 IKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKV  334 (505)
Q Consensus       255 ~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  334 (505)
                      +|.+..+|..  +++|+.|+++.+..               .  ..+    ..+++|+.|++.+|   .+..+|.     
T Consensus       170 ~N~l~~l~~~--~~~L~~L~Ls~N~l---------------~--~l~----~~~~~L~~L~L~~N---~l~~l~~-----  218 (622)
T 3g06_A          170 NNQLTSLPML--PSGLQELSVSDNQL---------------A--SLP----TLPSELYKLWAYNN---RLTSLPA-----  218 (622)
T ss_dssp             SSCCSCCCCC--CTTCCEEECCSSCC---------------S--CCC----CCCTTCCEEECCSS---CCSSCCC-----
T ss_pred             CCCCCCCccc--CCCCcEEECCCCCC---------------C--CCC----CccchhhEEECcCC---cccccCC-----
Confidence            9998888833  67777777642110               0  011    12467777777776   3444442     


Q ss_pred             CCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccc
Q 037920          335 GPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSN  414 (505)
Q Consensus       335 ~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l  414 (505)
                      .+++|++|++++|.-                     .+      ++  ..+++|+.|++++|+++.++.           
T Consensus       219 ~~~~L~~L~Ls~N~L---------------------~~------lp--~~l~~L~~L~Ls~N~L~~lp~-----------  258 (622)
T 3g06_A          219 LPSGLKELIVSGNRL---------------------TS------LP--VLPSELKELMVSGNRLTSLPM-----------  258 (622)
T ss_dssp             CCTTCCEEECCSSCC---------------------SC------CC--CCCTTCCEEECCSSCCSCCCC-----------
T ss_pred             CCCCCCEEEccCCcc---------------------Cc------CC--CCCCcCcEEECCCCCCCcCCc-----------
Confidence            346777777777651                     11      01  246778888888887776632           


Q ss_pred             cccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920          415 NTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       415 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                       .+++|++|++++|. ++.+  +...       ..+++|+.|++++++
T Consensus       259 -~~~~L~~L~Ls~N~-L~~l--p~~l-------~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          259 -LPSGLLSLSVYRNQ-LTRL--PESL-------IHLSSETTVNLEGNP  295 (622)
T ss_dssp             -CCTTCCEEECCSSC-CCSC--CGGG-------GGSCTTCEEECCSCC
T ss_pred             -ccccCcEEeCCCCC-CCcC--CHHH-------hhccccCEEEecCCC
Confidence             45778888888775 6555  3322       345778888887776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=3e-20  Score=187.98  Aligned_cols=241  Identities=20%  Similarity=0.277  Sum_probs=165.9

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEe
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSL  152 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L  152 (505)
                      ..+.++.++..+..+|... .++++.|++   .++.+..++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L---~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNL---MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCC-CTTCSEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCccCCCC-CCCccEEEC---cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            4567888888787777533 368888888   555666666555788888888888888888754 57888888888888


Q ss_pred             eccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          153 DNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       153 ~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      ++|.+.. + ..+..+++|++|++++|+++.+|. .+.++++|+.|++++|+.++.++...+..+++|++|++++|.+..
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            8888887 4 557788888888888888887764 577888888888888888888887667888888888888887754


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCCCCCC-CC-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG-LF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ  307 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~  307 (505)
                      .        | .+..+++|+.|++++|.+..++.. +. +++|+.|.+..+..                 ..........
T Consensus       211 ~--------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------~~~~~~~~~~  264 (452)
T 3zyi_A          211 M--------P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-----------------SLIERNAFDG  264 (452)
T ss_dssp             C--------C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-----------------CEECTTTTTT
T ss_pred             c--------c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-----------------ceECHHHhcC
Confidence            3        2 377788888888888887765432 22 55555555431110                 0000011112


Q ss_pred             hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                      +++|+.|++++|   .+..++.... ..+++|+.|++++|+
T Consensus       265 l~~L~~L~L~~N---~l~~~~~~~~-~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          265 LASLVELNLAHN---NLSSLPHDLF-TPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTCCEEECCSS---CCSCCCTTSS-TTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC---cCCccChHHh-ccccCCCEEEccCCC
Confidence            566677777666   3333333221 456666777766665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=4.1e-20  Score=175.02  Aligned_cols=216  Identities=20%  Similarity=0.279  Sum_probs=174.8

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~  154 (505)
                      +.++.+++.+..+|.. ..++|+.|++   .++.+..++...|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l---~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFL---HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEe---eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            6788888888888753 4579999999   66777778777679999999999999999986 67899999999999999


Q ss_pred             cC-CCC--cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCc
Q 037920          155 CK-LLD--ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW  230 (505)
Q Consensus       155 ~~-l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  230 (505)
                      |. +..  +..+..+++|++|++++|+++.+ |..+.++++|++|++++ +.+..++...++.+++|++|++++|.+...
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccccc
Confidence            97 777  57889999999999999999887 56688999999999999 556677766578999999999999987432


Q ss_pred             hhhhhccccccccCCCCcCEEEeecccCCCC-CCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920          231 EVEMEGVKNASLHELKHLTSLELHIKDVNTL-PRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ  309 (505)
Q Consensus       231 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~  309 (505)
                             .+..+..+++|+.|++++|.+..+ |..+                                        ..++
T Consensus       169 -------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------~~l~  201 (285)
T 1ozn_A          169 -------PERAFRGLHSLDRLLLHQNRVAHVHPHAF----------------------------------------RDLG  201 (285)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCCEECTTTT----------------------------------------TTCT
T ss_pred             -------CHHHhcCccccCEEECCCCcccccCHhHc----------------------------------------cCcc
Confidence                   335688899999999999988754 3221                                        1157


Q ss_pred             ceeEEeecCCCCCCcchhh-hhhhccCCCCccEEEEeCCC
Q 037920          310 GIEDLGLSKLPEQDVDYFV-NELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       310 ~L~~L~l~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~  348 (505)
                      +|+.|++++|   .+..++ ..+  ..+++|++|++++|+
T Consensus       202 ~L~~L~l~~n---~l~~~~~~~~--~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          202 RLMTLYLFAN---NLSALPTEAL--APLRALQYLRLNDNP  236 (285)
T ss_dssp             TCCEEECCSS---CCSCCCHHHH--TTCTTCCEEECCSSC
T ss_pred             cccEeeCCCC---cCCcCCHHHc--ccCcccCEEeccCCC
Confidence            7888888887   333344 335  678889999988887

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=3.3e-20  Score=186.95  Aligned_cols=241  Identities=20%  Similarity=0.314  Sum_probs=166.7

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEe
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSL  152 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L  152 (505)
                      ..+.++..+..+..+|... .++++.|++   .++.+..++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L---~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGI-STNTRLLNL---HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCC-CTTCSEEEC---CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCcCCCCC-CCCCcEEEc---cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            3566777777777777543 367788888   555566666555677888888888888877754 56777888888888


Q ss_pred             eccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          153 DNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       153 ~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      ++|.+.. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+..+++|++|++++|.+..
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            8887777 3 457778888888888887777754 567778888888887777777776657778888888888877653


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCCCCC-CCC-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR-GLF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ  307 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~  307 (505)
                      +        | .+..+++|+.|++++|.+..++. .+. +++|+.|.+..+..                 ..........
T Consensus       200 ~--------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------~~~~~~~~~~  253 (440)
T 3zyj_A          200 I--------P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-----------------QVIERNAFDN  253 (440)
T ss_dssp             C--------C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----------------CEECTTSSTT
T ss_pred             c--------c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce-----------------eEEChhhhcC
Confidence            3        2 36777788888888887775533 332 67777776532210                 0111111123


Q ss_pred             hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                      +++|+.|+|++|   .++.++.... ..+++|+.|++++|+
T Consensus       254 l~~L~~L~L~~N---~l~~~~~~~~-~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          254 LQSLVEINLAHN---NLTLLPHDLF-TPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTCCEEECTTS---CCCCCCTTTT-SSCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC---CCCccChhHh-ccccCCCEEEcCCCC
Confidence            789999999998   4445554332 678999999999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=9.7e-22  Score=189.19  Aligned_cols=285  Identities=14%  Similarity=0.142  Sum_probs=192.2

Q ss_pred             CCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccch
Q 037920          106 QESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI  184 (505)
Q Consensus       106 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~  184 (505)
                      ........+..++..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+...++.+++|++|++++|+++.++ 
T Consensus        18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-   96 (317)
T 3o53_A           18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-   96 (317)
T ss_dssp             CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-
T ss_pred             cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-
Confidence            444455556666777888888998888888865 578888889999998888877333888888999999888887665 


Q ss_pred             hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920          185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG  264 (505)
Q Consensus       185 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  264 (505)
                         ..++|++|++++ +.+..++.   ..+++|++|++++|.+...       .+..+..+++|+.|++++|.+..++..
T Consensus        97 ---~~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           97 ---VGPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKITML-------RDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             ---ECTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCCSG-------GGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             ---CCCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCCCc-------cchhhhccCCCCEEECCCCCCCcccHH
Confidence               337888888888 45555553   3477888999888887443       345677788888888888876543221


Q ss_pred             CCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEE
Q 037920          265 LFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHI  344 (505)
Q Consensus       265 ~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l  344 (505)
                                                            .+...+++|+.|++++|   .+..++..   ..+++|++|++
T Consensus       163 --------------------------------------~~~~~l~~L~~L~L~~N---~l~~~~~~---~~l~~L~~L~L  198 (317)
T 3o53_A          163 --------------------------------------ELAASSDTLEHLNLQYN---FIYDVKGQ---VVFAKLKTLDL  198 (317)
T ss_dssp             --------------------------------------GGGGGTTTCCEEECTTS---CCCEEECC---CCCTTCCEEEC
T ss_pred             --------------------------------------HHhhccCcCCEEECCCC---cCcccccc---cccccCCEEEC
Confidence                                                  11122577888888887   34444432   24788889988


Q ss_pred             eCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEE
Q 037920          345 WNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIE  424 (505)
Q Consensus       345 ~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~  424 (505)
                      ++|.-.                     +     +......+++|+.|++++|+++.++..         +..+++|++|+
T Consensus       199 s~N~l~---------------------~-----l~~~~~~l~~L~~L~L~~N~l~~l~~~---------~~~l~~L~~L~  243 (317)
T 3o53_A          199 SSNKLA---------------------F-----MGPEFQSAAGVTWISLRNNKLVLIEKA---------LRFSQNLEHFD  243 (317)
T ss_dssp             CSSCCC---------------------E-----ECGGGGGGTTCSEEECTTSCCCEECTT---------CCCCTTCCEEE
T ss_pred             CCCcCC---------------------c-----chhhhcccCcccEEECcCCcccchhhH---------hhcCCCCCEEE
Confidence            888611                     1     111123578899999999988776543         67789999999


Q ss_pred             EccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCccceeee
Q 037920          425 IKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRY  495 (505)
Q Consensus       425 l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~  495 (505)
                      +++|+-.... .+.       ....+++|+.+++.+++.++....   .....+.+....-..|..+..-|
T Consensus       244 l~~N~~~~~~-~~~-------~~~~~~~L~~l~l~~~~~l~~~~~---~~~~~~~~~~~~~~cc~~l~~~~  303 (317)
T 3o53_A          244 LRGNGFHCGT-LRD-------FFSKNQRVQTVAKQTVKKLTGQNE---EECTVPTLGHYGAYCCEDLPAPF  303 (317)
T ss_dssp             CTTCCCBHHH-HHH-------HHHTCHHHHHHHHHHHHHHHSSSS---CCCSSTTCEEETTEEEBCCTTTH
T ss_pred             ccCCCccCcC-HHH-------HHhccccceEEECCCchhccCCch---hccCCCceecccceeeccCChhH
Confidence            9988733111 122       234568899998888887765432   12223444444445566665433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.4e-20  Score=177.52  Aligned_cols=230  Identities=16%  Similarity=0.135  Sum_probs=184.7

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCcccc---ChhHHhCCCCccEEEEeCCcCccC
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTI---PNKFFERMMQVRVINLTNINLMSL  137 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~l  137 (505)
                      ++.++. ...+++++|++++|.+..++..  ..+++|++|++   .++.+..+   +..+ ..+++|++|++++|.++.+
T Consensus        19 l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l   93 (306)
T 2z66_A           19 LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL---SSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM   93 (306)
T ss_dssp             CSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC---CSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE
T ss_pred             cccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEEC---CCCccCcccCccccc-ccccccCEEECCCCccccC
Confidence            445444 4567999999999999988864  49999999999   44544433   4444 6799999999999999999


Q ss_pred             cccccCCCCCCeeEeeccCCCC-c--ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCC-ccChhhhc
Q 037920          138 PSSLGLLSNLRTLSLDNCKLLD-I--TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELE-VIPANVLS  212 (505)
Q Consensus       138 ~~~l~~l~~L~~L~L~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~  212 (505)
                      |..+..+++|++|++++|.+.. +  ..+..+++|++|++++|.++.. +..+..+++|++|++++|.... .+|.. +.
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~  172 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FT  172 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CT
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hh
Confidence            9999999999999999999887 3  5789999999999999998865 5668899999999999954433 35655 78


Q ss_pred             CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEe
Q 037920          213 NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKI  292 (505)
Q Consensus       213 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l  292 (505)
                      .+++|++|++++|.+.       +..+..+..+++|+.|++++|.+..++...                           
T Consensus       173 ~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------  218 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLE-------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP---------------------------  218 (306)
T ss_dssp             TCTTCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCSBCCSGG---------------------------
T ss_pred             hCcCCCEEECCCCCcC-------CcCHHHhcCCCCCCEEECCCCccCccChhh---------------------------
Confidence            9999999999999884       444678899999999999999987765431                           


Q ss_pred             cCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCC-CCccEEEEeCCC
Q 037920          293 CPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGP-SQLKHLHIWNHP  348 (505)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l-~~L~~L~l~~~~  348 (505)
                                  ...+++|+.|++++|  ......+..+  ..+ ++|++|++++|+
T Consensus       219 ------------~~~l~~L~~L~L~~N--~l~~~~~~~~--~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          219 ------------YKCLNSLQVLDYSLN--HIMTSKKQEL--QHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ------------GTTCTTCCEEECTTS--CCCBCSSSSC--CCCCTTCCEEECTTCC
T ss_pred             ------------ccCcccCCEeECCCC--CCcccCHHHH--HhhhccCCEEEccCCC
Confidence                        012678999999998  4445555555  556 499999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=1.7e-19  Score=181.76  Aligned_cols=243  Identities=19%  Similarity=0.247  Sum_probs=176.8

Q ss_pred             CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEE
Q 037920           96 QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEIL  172 (505)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L  172 (505)
                      ..+.++.   ....+..+|..+   .+++++|++++|.++.++ ..+..+++|++|++++|.+..  +..+..+++|++|
T Consensus        44 ~~~~v~c---~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           44 QFSKVIC---VRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             TSCEEEC---CSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCCEEEe---CCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            3556666   666777888755   478999999999999865 689999999999999999988  4789999999999


Q ss_pred             EccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEE
Q 037920          173 CLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL  251 (505)
Q Consensus       173 ~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  251 (505)
                      ++++|+++.+|. .+..+++|++|++++ +.+..++...+..+++|++|++++|....      ...+..+..+++|+.|
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLS------YISEGAFEGLSNLRYL  190 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCSSCCEE
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcc------eeCcchhhcccccCee
Confidence            999999998875 588999999999999 56778877668999999999999865421      2223468899999999


Q ss_pred             EeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhh
Q 037920          252 ELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL  331 (505)
Q Consensus       252 ~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l  331 (505)
                      ++++|.+..+|....                                         +++|+.|++++|  ......+..+
T Consensus       191 ~L~~n~l~~~~~~~~-----------------------------------------l~~L~~L~Ls~N--~l~~~~~~~~  227 (440)
T 3zyj_A          191 NLAMCNLREIPNLTP-----------------------------------------LIKLDELDLSGN--HLSAIRPGSF  227 (440)
T ss_dssp             ECTTSCCSSCCCCTT-----------------------------------------CSSCCEEECTTS--CCCEECTTTT
T ss_pred             cCCCCcCccccccCC-----------------------------------------CcccCEEECCCC--ccCccChhhh
Confidence            999999888775322                                         456666666666  2222334444


Q ss_pred             hccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccC
Q 037920          332 AKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSC  411 (505)
Q Consensus       332 ~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c  411 (505)
                        ..+++|+.|++++|....      +.                .   .....+++|+.|++++|+++.++...      
T Consensus       228 --~~l~~L~~L~L~~n~l~~------~~----------------~---~~~~~l~~L~~L~L~~N~l~~~~~~~------  274 (440)
T 3zyj_A          228 --QGLMHLQKLWMIQSQIQV------IE----------------R---NAFDNLQSLVEINLAHNNLTLLPHDL------  274 (440)
T ss_dssp             --TTCTTCCEEECTTCCCCE------EC----------------T---TSSTTCTTCCEEECTTSCCCCCCTTT------
T ss_pred             --ccCccCCEEECCCCceeE------EC----------------h---hhhcCCCCCCEEECCCCCCCccChhH------
Confidence              566777777777765110      00                0   11124667777777777666654321      


Q ss_pred             ccccccccccEEEEcccc
Q 037920          412 VSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       412 ~~l~~l~~L~~L~l~~c~  429 (505)
                        +..+++|++|++++++
T Consensus       275 --~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          275 --FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             --TSSCTTCCEEECCSSC
T ss_pred             --hccccCCCEEEcCCCC
Confidence              4556777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=1.3e-19  Score=183.13  Aligned_cols=228  Identities=21%  Similarity=0.252  Sum_probs=183.1

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS  139 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  139 (505)
                      ++..++. ...+++++|++++|.+..++.  ...+++|+.|++   .++.+..++...|.++++|++|++++|.++.+|.
T Consensus        65 ~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  140 (452)
T 3zyi_A           65 GLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL---GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS  140 (452)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred             CcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEEC---CCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence            4455443 456789999999999977743  349999999999   6666777776678999999999999999999776


Q ss_pred             -cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCC-CCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCC
Q 037920          140 -SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGS-NIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNL  214 (505)
Q Consensus       140 -~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l  214 (505)
                       .+..+++|++|++++|.+.. + ..+.++++|++|++++| .++.++. .+..+++|++|++++ +.+..+|.  +..+
T Consensus       141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l  217 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPL  217 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTC
T ss_pred             hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cccc
Confidence             48889999999999999988 4 67899999999999995 6777764 588999999999999 56677775  7899


Q ss_pred             CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC-C-CCCCcEEEEEEcceeecccccceEEe
Q 037920          215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL-F-FPKLQRYKIHIGGYYYAGVWRRELKI  292 (505)
Q Consensus       215 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~-~~~L~~L~~~~~~~~~~~~~~~~l~l  292 (505)
                      ++|++|++++|.+       .+..+..+..+++|+.|++++|.+..++... . +++|+.|++..+..            
T Consensus       218 ~~L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l------------  278 (452)
T 3zyi_A          218 VGLEELEMSGNHF-------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL------------  278 (452)
T ss_dssp             TTCCEEECTTSCC-------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC------------
T ss_pred             ccccEEECcCCcC-------cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC------------
Confidence            9999999999988       4455678999999999999999998665433 3 88999988753321            


Q ss_pred             cCCCCccchhhHHHHhcceeEEeecCCC
Q 037920          293 CPDSKIRLKDGLIVQLQGIEDLGLSKLP  320 (505)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~  320 (505)
                           ...+......+++|+.|++.+|+
T Consensus       279 -----~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          279 -----SSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             -----SCCCTTSSTTCTTCCEEECCSSC
T ss_pred             -----CccChHHhccccCCCEEEccCCC
Confidence                 11222222337899999999983

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=1.3e-21  Score=204.99  Aligned_cols=195  Identities=14%  Similarity=0.067  Sum_probs=108.7

Q ss_pred             ccCCCcEEEecCCCCccC--CCCCC-CCC-ccEEEeeecCCCCccc-cChhHHhCCCCccEEEEeCCcCcc-----Cccc
Q 037920           71 AIKLYTSIVLHDIRTNLL--PEVVE-SPQ-LKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMS-----LPSS  140 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l--~~~~~-~~~-L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~  140 (505)
                      .++++++|+++++.+...  ..... +++ |++|++  ..+..... -...+...+++|++|++++|.++.     ++..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L--~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE--ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC--cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            456677777776655221  11111 233 777777  23221111 111223466777777777776543     2223


Q ss_pred             ccCCCCCCeeEeeccCCCC------cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCC---CccChhhh
Q 037920          141 LGLLSNLRTLSLDNCKLLD------ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCREL---EVIPANVL  211 (505)
Q Consensus       141 l~~l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~~~~~~  211 (505)
                      +..+++|++|++++|.+..      +..+..+++|++|++++|.+..+|..+..+++|++|+++.+...   ...+.. +
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l  266 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-L  266 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-C
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-h
Confidence            4556777777777777652      23445677777777777777667766777777777777642221   112222 4


Q ss_pred             cCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC--CCCCC-CCCCCcEEEEE
Q 037920          212 SNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT--LPRGL-FFPKLQRYKIH  276 (505)
Q Consensus       212 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~~~  276 (505)
                      ..+++|+.+++.++.        .+.++..+..+++|+.|++++|.+..  ++..+ .+++|+.|.+.
T Consensus       267 ~~~~~L~~L~l~~~~--------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMG--------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCCTTCCEEEETTCC--------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hccccccccCccccc--------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            566666666666432        23455566677778888887776532  11111 26777777765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=2.4e-20  Score=179.46  Aligned_cols=215  Identities=17%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             CCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEE
Q 037920           94 SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILC  173 (505)
Q Consensus        94 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~  173 (505)
                      +++|+.|++   .++.+..++...|..+++|++|++++|.++..++ +..+++|++|++++|.+.++.   ..++|++|+
T Consensus        33 ~~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDL---SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEEC---TTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred             CCCCCEEEC---cCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence            345555555   3333444444344555555555555555554433 555555555555555544411   125555555


Q ss_pred             ccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccc-cCCCCcCEEE
Q 037920          174 LRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL-HELKHLTSLE  252 (505)
Q Consensus       174 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~  252 (505)
                      +++|+++.++..  .+++|++|++++ +.+..++...++.+++|++|++++|.+...       .+..+ ..+++|+.|+
T Consensus       106 l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A          106 AANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLEHLN  175 (317)
T ss_dssp             CCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCCEEE
T ss_pred             CCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcc-------cHHHHhhccCcCCEEE
Confidence            555555544322  245555555555 333333332244555555555555554321       12222 2455555555


Q ss_pred             eecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920          253 LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA  332 (505)
Q Consensus       253 l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  332 (505)
                      +++|.+..++....+++|+.|+++.+..                 ...+..+ ..+++|+.|++++|   .+..+|..+ 
T Consensus       176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-----------------~~l~~~~-~~l~~L~~L~L~~N---~l~~l~~~~-  233 (317)
T 3o53_A          176 LQYNFIYDVKGQVVFAKLKTLDLSSNKL-----------------AFMGPEF-QSAAGVTWISLRNN---KLVLIEKAL-  233 (317)
T ss_dssp             CTTSCCCEEECCCCCTTCCEEECCSSCC-----------------CEECGGG-GGGTTCSEEECTTS---CCCEECTTC-
T ss_pred             CCCCcCcccccccccccCCEEECCCCcC-----------------Ccchhhh-cccCcccEEECcCC---cccchhhHh-
Confidence            5555554443332233333333321100                 0001111 12566777777776   444556555 


Q ss_pred             ccCCCCccEEEEeCCC
Q 037920          333 KVGPSQLKHLHIWNHP  348 (505)
Q Consensus       333 ~~~l~~L~~L~l~~~~  348 (505)
                       ..+++|+.|++++|+
T Consensus       234 -~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          234 -RFSQNLEHFDLRGNG  248 (317)
T ss_dssp             -CCCTTCCEEECTTCC
T ss_pred             -hcCCCCCEEEccCCC
Confidence             566777777777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=7.6e-19  Score=166.39  Aligned_cols=199  Identities=23%  Similarity=0.298  Sum_probs=171.1

Q ss_pred             cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT  149 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  149 (505)
                      ..+++++.++++++.++.+|... .++++.|++   .++.+..++...|..+++|++|++++|.++.++.. ..+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L---~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHL---SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEEC---TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCCCC-CCCCCEEEc---CCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            45678999999999999988654 379999999   66666777666679999999999999999998764 78999999


Q ss_pred             eEeeccCCCC-cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          150 LSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       150 L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      |++++|.+.. |..+..+++|++|++++|+++.+| ..+..+++|++|++++ +.+..++...+..+++|+.|++++|.+
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcC
Confidence            9999999998 788899999999999999999986 5689999999999999 567788877678999999999999988


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEccee
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYY  281 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~  281 (505)
                      ...+       +..+..+++|+.|++++|.+..+|..+. ..+|+.+.+..+.|.
T Consensus       161 ~~l~-------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELP-------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccC-------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            5432       2456889999999999999999998876 778999988766554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=1.5e-18  Score=166.04  Aligned_cols=195  Identities=16%  Similarity=0.233  Sum_probs=169.2

Q ss_pred             cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920           68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL  147 (505)
Q Consensus        68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  147 (505)
                      ....++++++|+++++.+..++....+++|+.|++   .++.+..++.  +..+++|++|++++|.++.++ .+..+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L---~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L  109 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLEL---KDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSI  109 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTC
T ss_pred             cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEc---cCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCC
Confidence            34568899999999999999988779999999999   6666777776  689999999999999999885 68999999


Q ss_pred             CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      ++|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++| .+..++.  +..+++|+.|++++|.+
T Consensus       110 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCcc
Confidence            9999999999996569999999999999999998875 899999999999994 6666666  78999999999999988


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEccee
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYY  281 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~  281 (505)
                      ...+         .+..+++|+.|++++|.+..++....+++|+.|++..+.+.
T Consensus       186 ~~~~---------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDIS---------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCG---------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             CcCh---------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence            5532         27889999999999999998875444999999999876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.7e-18  Score=162.54  Aligned_cols=198  Identities=26%  Similarity=0.396  Sum_probs=160.8

Q ss_pred             cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCee
Q 037920           72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTL  150 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L  150 (505)
                      ....+.++++++.++.+|... .++++.|++   .++.+..++...|.++++|++|++++|.++.+|.. +..+++|++|
T Consensus        15 ~~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           15 NNNKNSVDCSSKKLTAIPSNI-PADTKKLDL---QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             ETTTTEEECTTSCCSSCCSCC-CTTCSEEEC---CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCCEEEccCCCCCccCCCC-CCCCCEEEC---cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            346788999999998888643 368999999   66667777776678999999999999999987765 4789999999


Q ss_pred             EeeccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          151 SLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       151 ~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      ++++|.+.. + ..+..+++|++|++++|.++.++. .+..+++|++|++++ +.+..++...++.+++|++|++++|.+
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcC
Confidence            999999888 4 567889999999999999988864 468899999999998 566777776578899999999999987


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEccee
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGYY  281 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~~~  281 (505)
                      ...       .+..+..+++|+.|++++|.+..+|....  +++|+.|++..+.|.
T Consensus       170 ~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          170 KRV-------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             SCC-------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cEe-------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            443       33567889999999999999988877543  788898888655544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=1.3e-21  Score=198.58  Aligned_cols=343  Identities=22%  Similarity=0.194  Sum_probs=172.5

Q ss_pred             HhCCCCccEEEEeCCcCc-----cCcccccCCCCCCeeEeeccCCCC--ccccc-CCC----CCcEEEccCCCCc-----
Q 037920          118 FERMMQVRVINLTNINLM-----SLPSSLGLLSNLRTLSLDNCKLLD--ITVVR-DLK----KLEILCLRGSNIK-----  180 (505)
Q Consensus       118 ~~~l~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~-~l~----~L~~L~l~~~~l~-----  180 (505)
                      +..+++|++|++++|.++     .++..+..+++|++|++++|.+.+  +..+. .++    +|++|++++|+++     
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            445555555555555554     234445555555555555555444  22221 222    4555555555554     


Q ss_pred             ccchhhhCCCCCCEEeeeCCCCCCcc-Ch----hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeec
Q 037920          181 MLPIEVSELARLRLLGLRDCRELEVI-PA----NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI  255 (505)
Q Consensus       181 ~lp~~i~~l~~L~~L~l~~~~~~~~~-~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (505)
                      .++..+.++++|++|++++|. +... +.    ......++|++|++++|.+....   ...++..+..+++|+.|++++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---CEPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---HHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---HHHHHHHHhhCCCCCEEECcC
Confidence            234455555555555555533 2211 11    10112345555555555543321   012333444455555555555


Q ss_pred             ccCCCC-----CCCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcch--
Q 037920          256 KDVNTL-----PRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDY--  326 (505)
Q Consensus       256 ~~~~~l-----~~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--  326 (505)
                      |.+...     .....  .++|+.|++..+....            .+....+..+ ..+++|++|++++|  .....  
T Consensus       180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~------------~~~~~l~~~l-~~~~~L~~L~Ls~n--~l~~~~~  244 (461)
T 1z7x_W          180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS------------DNCRDLCGIV-ASKASLRELALGSN--KLGDVGM  244 (461)
T ss_dssp             SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT------------THHHHHHHHH-HHCTTCCEEECCSS--BCHHHHH
T ss_pred             CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH------------HHHHHHHHHH-HhCCCccEEeccCC--cCChHHH
Confidence            554321     11000  2355555442110000            0000112223 34799999999998  32222  


Q ss_pred             --hhhhhhccCCCCccEEEEeCCCCCC------cccccccc-chhcchhhhhhhhcccccccccc-cccccccccccccc
Q 037920          327 --FVNELAKVGPSQLKHLHIWNHPPNP------AESKRREE-STDVMQSHEIILKVNVNALFVEK-VTLPKLENLELDSI  396 (505)
Q Consensus       327 --~~~~l~~~~l~~L~~L~l~~~~~~~------~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~  396 (505)
                        +...+. ..+++|++|++++|.-..      ...+..++ ++.++++.+.+.+.....+.... ...++|++|++++|
T Consensus       245 ~~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          245 AELCPGLL-HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHh-cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence              222221 358999999999996322      11111122 45666666665543222221111 12468999999999


Q ss_pred             ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCccccccc--ccCCccc
Q 037920          397 NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNF--CTGDVDI  474 (505)
Q Consensus       397 ~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~--~~~~~~~  474 (505)
                      .+.......+  ...  +..+++|++|++++|. +++.....-....   ....++|++|++++|. +...  ...+..+
T Consensus       324 ~l~~~~~~~l--~~~--l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l  394 (461)
T 1z7x_W          324 SFTAACCSHF--SSV--LAQNRFLLELQISNNR-LEDAGVRELCQGL---GQPGSVLRVLWLADCD-VSDSSCSSLAATL  394 (461)
T ss_dssp             CCBGGGHHHH--HHH--HHHCSSCCEEECCSSB-CHHHHHHHHHHHH---TSTTCCCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred             CCchHHHHHH--HHH--HhhCCCccEEEccCCc-cccccHHHHHHHH---cCCCCceEEEECCCCC-CChhhHHHHHHHH
Confidence            7765421110  111  5667999999999995 6543211111000   1125799999999996 4320  0112246


Q ss_pred             ccCCCccceecccCc
Q 037920          475 LEFPSLKELIINRCP  489 (505)
Q Consensus       475 ~~~~~L~~L~i~~C~  489 (505)
                      ..+++|++|++++|+
T Consensus       395 ~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          395 LANHSLRELDLSNNC  409 (461)
T ss_dssp             HHCCCCCEEECCSSS
T ss_pred             HhCCCccEEECCCCC
Confidence            678999999999994

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=3.1e-20  Score=178.18  Aligned_cols=246  Identities=18%  Similarity=0.160  Sum_probs=155.2

Q ss_pred             CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc--Cccccc-------CCCCCCeeEeeccCCCC--cc
Q 037920           93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS--LPSSLG-------LLSNLRTLSLDNCKLLD--IT  161 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~-------~l~~L~~L~L~~~~l~~--~~  161 (505)
                      ..++|+.|.+  .++. + .+|..+...   |+.|+++++.++.  +|..+.       .+++|++|++++|.+.+  |.
T Consensus        41 ~~~~L~~l~l--~~n~-l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           41 GGRSLEYLLK--RVDT-E-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEECTTHHH--HCCT-T-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             cCCCceeEee--cccc-c-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            3456666666  3333 3 667665433   7777888877754  555554       67888888888888775  55


Q ss_pred             cc--cCCCCCcEEEccCCCCcccchhhhCC-----CCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhh
Q 037920          162 VV--RDLKKLEILCLRGSNIKMLPIEVSEL-----ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEM  234 (505)
Q Consensus       162 ~i--~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  234 (505)
                      .+  +.+++|++|++++|+++..|..+..+     ++|++|++++ +.+..++...++.+++|++|++++|.+...    
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----  188 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGE----  188 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHH----
T ss_pred             HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcc----
Confidence            54  78888888888888887777666666     7888888888 445555544477888888888888876321    


Q ss_pred             hccccccc--cCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920          235 EGVKNASL--HELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE  312 (505)
Q Consensus       235 ~~~~~~~l--~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~  312 (505)
                       ...+..+  ..+++|+.|++++|.+..++.                                    ....+...+++|+
T Consensus       189 -~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------------------~~~~~~~~l~~L~  231 (312)
T 1wwl_A          189 -RGLISALCPLKFPTLQVLALRNAGMETPSG------------------------------------VCSALAAARVQLQ  231 (312)
T ss_dssp             -HHHHHHSCTTSCTTCCEEECTTSCCCCHHH------------------------------------HHHHHHHTTCCCS
T ss_pred             -hHHHHHHHhccCCCCCEEECCCCcCcchHH------------------------------------HHHHHHhcCCCCC
Confidence             1122233  677888888888777543221                                    1122333357788


Q ss_pred             EEeecCCCCCCcchhh-hhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccc
Q 037920          313 DLGLSKLPEQDVDYFV-NELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENL  391 (505)
Q Consensus       313 ~L~l~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L  391 (505)
                      .|++++|  ......| ...  ..+++|++|++++|.-..                          + +. ..+++|++|
T Consensus       232 ~L~Ls~N--~l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~--------------------------i-p~-~~~~~L~~L  279 (312)
T 1wwl_A          232 GLDLSHN--SLRDAAGAPSC--DWPSQLNSLNLSFTGLKQ--------------------------V-PK-GLPAKLSVL  279 (312)
T ss_dssp             EEECTTS--CCCSSCCCSCC--CCCTTCCEEECTTSCCSS--------------------------C-CS-SCCSEEEEE
T ss_pred             EEECCCC--cCCcccchhhh--hhcCCCCEEECCCCccCh--------------------------h-hh-hccCCceEE
Confidence            8888777  2222222 122  446777888877775110                          0 00 012677778


Q ss_pred             cccccccccccccceeeccCccccccccccEEEEcccc
Q 037920          392 ELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR  429 (505)
Q Consensus       392 ~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~  429 (505)
                      ++++|+++.++.          +..+++|++|++++++
T Consensus       280 ~Ls~N~l~~~p~----------~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          280 DLSYNRLDRNPS----------PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             ECCSSCCCSCCC----------TTTSCEEEEEECTTCT
T ss_pred             ECCCCCCCCChh----------HhhCCCCCEEeccCCC
Confidence            887777766632          5667777777777775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=1.1e-19  Score=190.33  Aligned_cols=87  Identities=16%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             cccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCccc
Q 037920          384 TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEK  463 (505)
Q Consensus       384 ~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  463 (505)
                      .+++|+.|++++|++.+.....+       +..+++|++|++++|+ ++......       ....+|+|+.|++++|. 
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~-------~~~~~~L~~L~l~~n~-l~~~~~~~-------~~~~l~~L~~L~ls~n~-  524 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEF-------SRGCPNLQKLEMRGCC-FSERAIAA-------AVTKLPSLRYLWVQGYR-  524 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHH-------HTCCTTCCEEEEESCC-CBHHHHHH-------HHHHCSSCCEEEEESCB-
T ss_pred             hCccceEeeccCCCCCHHHHHHH-------HhcCcccCeeeccCCC-CcHHHHHH-------HHHhcCccCeeECcCCc-
Confidence            47788888888887654321111       4667888888888887 54321111       12356888888888888 


Q ss_pred             ccccccCCcccccCCCccceeccc
Q 037920          464 LRNFCTGDVDILEFPSLKELIINR  487 (505)
Q Consensus       464 L~~~~~~~~~~~~~~~L~~L~i~~  487 (505)
                      +..... ..-...+|.+....|..
T Consensus       525 it~~~~-~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          525 ASMTGQ-DLMQMARPYWNIELIPS  547 (592)
T ss_dssp             CCTTCT-TGGGGCCTTEEEEEECC
T ss_pred             CCHHHH-HHHHHhCCCcEEEEecC
Confidence            433211 11123456666555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=2.1e-19  Score=172.37  Aligned_cols=241  Identities=16%  Similarity=0.157  Sum_probs=138.7

Q ss_pred             cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCc--cccChhHH------hCCCCccEEEEeCCcCcc-Ccccc-
Q 037920           72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSS--LTIPNKFF------ERMMQVRVINLTNINLMS-LPSSL-  141 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~------~~l~~L~~L~l~~~~~~~-l~~~l-  141 (505)
                      .++++.+++++|.+ .+|.... ..|+.|++   ..+.+  ..++..++      .++++|++|++++|.++. +|..+ 
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L---~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFT-DIIKSLSL---KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHH-HHHHHCCC---CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc-ccHHHHH-HHHhhccc---ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34566666666666 4543221 11666666   22222  23443321      156777777777777764 55554 


Q ss_pred             -cCCCCCCeeEeeccCCCC-cccccCC-----CCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCc--cChh-h
Q 037920          142 -GLLSNLRTLSLDNCKLLD-ITVVRDL-----KKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEV--IPAN-V  210 (505)
Q Consensus       142 -~~l~~L~~L~L~~~~l~~-~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~~~~-~  210 (505)
                       ..+++|++|++++|.+.+ |..++.+     ++|++|++++|+++.++ ..++++++|++|++++|...+.  ++.. .
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence             667777777777777666 5555544     67777777777776664 5666777777777777543332  1222 0


Q ss_pred             hcCCCCccEEEeeCCCCCCchhhhhcccc-ccccCCCCcCEEEeecccCCCCC-CCC--CCCCCcEEEEEEcceeecccc
Q 037920          211 LSNLSHLEELYIGYNSFGKWEVEMEGVKN-ASLHELKHLTSLELHIKDVNTLP-RGL--FFPKLQRYKIHIGGYYYAGVW  286 (505)
Q Consensus       211 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~-~~~--~~~~L~~L~~~~~~~~~~~~~  286 (505)
                      ++.+++|++|++++|.+...+     .++ ..+..+++|+.|++++|.+...+ ...  .+++|+.|+++.+..      
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l------  265 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPS-----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL------  265 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHH-----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC------
T ss_pred             hccCCCCCEEECCCCcCcchH-----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc------
Confidence            156677777777777664321     111 22345667777777777766533 111  156666666532110      


Q ss_pred             cceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          287 RRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       287 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                                 ...+..+   .++|+.|++++|   .++.+|. +  ..+++|++|++++|+
T Consensus       266 -----------~~ip~~~---~~~L~~L~Ls~N---~l~~~p~-~--~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          266 -----------KQVPKGL---PAKLSVLDLSYN---RLDRNPS-P--DELPQVGNLSLKGNP  307 (312)
T ss_dssp             -----------SSCCSSC---CSEEEEEECCSS---CCCSCCC-T--TTSCEEEEEECTTCT
T ss_pred             -----------Chhhhhc---cCCceEEECCCC---CCCCChh-H--hhCCCCCEEeccCCC
Confidence                       0111111   268899999988   4444555 4  678999999998886

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=3.3e-18  Score=157.41  Aligned_cols=199  Identities=15%  Similarity=0.235  Sum_probs=166.2

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeC-CcCccCc-
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN-INLMSLP-  138 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-  138 (505)
                      ++.++.  ...++++|++++|.+..++.  ...+++|++|++  .++..+..++...|.++++|++|++++ |.++.++ 
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l--~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV--SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEE--ECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeC--CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            555665  66799999999999988876  338999999999  444347888877789999999999999 9999876 


Q ss_pred             ccccCCCCCCeeEeeccCCCCcccccCCCCCc---EEEccCC-CCcccch-hhhCCCCCC-EEeeeCCCCCCccChhhhc
Q 037920          139 SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLE---ILCLRGS-NIKMLPI-EVSELARLR-LLGLRDCRELEVIPANVLS  212 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~---~L~l~~~-~l~~lp~-~i~~l~~L~-~L~l~~~~~~~~~~~~~~~  212 (505)
                      ..+..+++|++|++++|.+..++.++.+++|+   +|++++| +++.+|. .+..+++|+ +|++++ +.+..+|...+.
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~  177 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFN  177 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcC
Confidence            46889999999999999999844488888888   9999999 9998875 488999999 999998 566788876444


Q ss_pred             CCCCccEEEeeCCC-CCCchhhhhccccccccCC-CCcCEEEeecccCCCCCCCCCCCCCcEEEE
Q 037920          213 NLSHLEELYIGYNS-FGKWEVEMEGVKNASLHEL-KHLTSLELHIKDVNTLPRGLFFPKLQRYKI  275 (505)
Q Consensus       213 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~  275 (505)
                      . ++|++|++++|. +...       .+..+..+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus       178 ~-~~L~~L~L~~n~~l~~i-------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          178 G-TKLDAVYLNKNKYLTVI-------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             T-CEEEEEECTTCTTCCEE-------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             C-CCCCEEEcCCCCCcccC-------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence            4 899999999994 7433       34567888 9999999999999988877 5889998876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=2.5e-18  Score=162.86  Aligned_cols=198  Identities=21%  Similarity=0.306  Sum_probs=163.4

Q ss_pred             CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeeccCCCCcccccCCCCCcE
Q 037920           93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI  171 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~  171 (505)
                      ++++++++++   .+..+..+|..+   .+++++|++++|.++.+ +..+..+++|++|++++|.+..+...+.+++|++
T Consensus         8 ~l~~l~~l~~---~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            8 KVASHLEVNC---DKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             CSTTCCEEEC---TTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred             ccCCccEEEC---CCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence            6788999999   666777888755   37899999999999885 4678999999999999999988444488999999


Q ss_pred             EEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEE
Q 037920          172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL  251 (505)
Q Consensus       172 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  251 (505)
                      |++++|+++.+|..+..+++|++|++++ +.+..++...+..+++|++|++++|.+...       .+..+..+++|+.|
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL-------PPGLLTPTPKLEKL  153 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCTTCCEE
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc-------ChhhcccccCCCEE
Confidence            9999999999998889999999999998 567777765588999999999999988533       33557889999999


Q ss_pred             EeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhh
Q 037920          252 ELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL  331 (505)
Q Consensus       252 ~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l  331 (505)
                      ++++|.+..+|....                                       ..+++|+.|++++|   .+..+|..+
T Consensus       154 ~L~~N~l~~l~~~~~---------------------------------------~~l~~L~~L~L~~N---~l~~ip~~~  191 (290)
T 1p9a_G          154 SLANNNLTELPAGLL---------------------------------------NGLENLDTLLLQEN---SLYTIPKGF  191 (290)
T ss_dssp             ECTTSCCSCCCTTTT---------------------------------------TTCTTCCEEECCSS---CCCCCCTTT
T ss_pred             ECCCCcCCccCHHHh---------------------------------------cCcCCCCEEECCCC---cCCccChhh
Confidence            999999888776421                                       12678888888887   566788777


Q ss_pred             hccCCCCccEEEEeCCC
Q 037920          332 AKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       332 ~~~~l~~L~~L~l~~~~  348 (505)
                        ..+++|+.+++++|+
T Consensus       192 --~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          192 --FGSHLLPFAFLHGNP  206 (290)
T ss_dssp             --TTTCCCSEEECCSCC
T ss_pred             --cccccCCeEEeCCCC
Confidence              567899999999987

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=4.1e-18  Score=160.47  Aligned_cols=205  Identities=21%  Similarity=0.266  Sum_probs=165.3

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-c
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-S  139 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~  139 (505)
                      +..++. ...+++++|++++|.+..++.  ...+++|++|++   .++.+..++...|.++++|++|++++|.++.++ .
T Consensus        19 l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             ccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEEC---CCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            333343 345789999999999987764  348999999999   666677777766799999999999999999865 6


Q ss_pred             cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920          140 SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIPANVLSNLS  215 (505)
Q Consensus       140 ~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  215 (505)
                      .+..+++|++|++++|.+.. + ..++.+++|++|++++|.++.  +|..+.++++|++|++++ +.+..++...+..++
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~  173 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLH  173 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHH
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhh
Confidence            78999999999999999988 3 479999999999999999986  688999999999999999 556666654466556


Q ss_pred             Ccc----EEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEcce
Q 037920          216 HLE----ELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGY  280 (505)
Q Consensus       216 ~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~~  280 (505)
                      +|+    .|++++|.+...        +.......+|+.|++++|.+..+|....  +++|+.|++..+.|
T Consensus       174 ~L~~l~l~L~ls~n~l~~~--------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFI--------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEE--------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             hccccceeeecCCCccccc--------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            665    899999988533        2233344589999999999998887653  88999998865444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.4e-17  Score=156.16  Aligned_cols=186  Identities=23%  Similarity=0.358  Sum_probs=157.5

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-  139 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-  139 (505)
                      ++.++. ...+++++|++++|.+..++.  ...+++|++|++   .++.+..++..+|..+++|++|++++|.++.+|. 
T Consensus        28 l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  103 (270)
T 2o6q_A           28 LTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL---NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG  103 (270)
T ss_dssp             CSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC---CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred             CCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC---CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence            444443 345789999999999988875  448999999999   6667778888888999999999999999999775 


Q ss_pred             cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCC
Q 037920          140 SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSH  216 (505)
Q Consensus       140 ~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  216 (505)
                      .+..+++|++|++++|.+..  +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.+..++...+..+++
T Consensus       104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred             HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence            56889999999999999988  36688999999999999999988754 78999999999999 5667777665789999


Q ss_pred             ccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920          217 LEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT  260 (505)
Q Consensus       217 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  260 (505)
                      |++|++++|.+...       .+..+..+++|+.|++++|.+..
T Consensus       183 L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          183 LKTLKLDNNQLKRV-------PEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCEEECCSSCCSCC-------CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCEEECCCCcCCcC-------CHHHhccccCCCEEEecCCCeeC
Confidence            99999999988543       23567889999999999998653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=1.1e-19  Score=190.52  Aligned_cols=152  Identities=17%  Similarity=0.141  Sum_probs=97.1

Q ss_pred             ccCCCcEEEecCCCC-ccCC---C------------C-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCC-
Q 037920           71 AIKLYTSIVLHDIRT-NLLP---E------------V-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNI-  132 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~-~~l~---~------------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-  132 (505)
                      ..++++++++.++.. ..+.   .            . ..+++|+.|++  .++......+..+...+++|+.|++++| 
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L--~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRL--KRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEE--ESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEe--eCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            457788888887653 2111   0            1 15778888888  4444333333444346788888888888 


Q ss_pred             cCcc--CcccccCCCCCCeeEeeccCCCC--cccc----cCCCCCcEEEccCCC--Cc--ccchhhhCCCCCCEEeeeCC
Q 037920          133 NLMS--LPSSLGLLSNLRTLSLDNCKLLD--ITVV----RDLKKLEILCLRGSN--IK--MLPIEVSELARLRLLGLRDC  200 (505)
Q Consensus       133 ~~~~--l~~~l~~l~~L~~L~L~~~~l~~--~~~i----~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~  200 (505)
                      .++.  ++..+..+++|++|++++|.+.+  +..+    ..+++|+.|++++|.  +.  .++..+.++++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            4444  44445578888888888887655  2223    266788888888875  22  23333456788888888887


Q ss_pred             CCCCccChhhhcCCCCccEEEeeCC
Q 037920          201 RELEVIPANVLSNLSHLEELYIGYN  225 (505)
Q Consensus       201 ~~~~~~~~~~~~~l~~L~~L~l~~~  225 (505)
                      ..+..++.. +..+++|++|++..+
T Consensus       222 ~~~~~l~~~-~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          222 VPLEKLATL-LQRAPQLEELGTGGY  245 (594)
T ss_dssp             SCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred             CcHHHHHHH-HhcCCcceEcccccc
Confidence            665555554 677788888876654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1.1e-18  Score=177.67  Aligned_cols=212  Identities=16%  Similarity=0.161  Sum_probs=132.1

Q ss_pred             cCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920           72 IKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT  149 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  149 (505)
                      ++++++|++++|.+..++.  ...+++|++|++   +++.+...++  +..+++|++|++++|.++.+|.    .++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNL---SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEEC---TTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEe---eCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence            3367777777777765542  236677777777   3343433333  4667777777777776665543    266777


Q ss_pred             eEeeccCCCC-cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          150 LSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       150 L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      |++++|.+.. +..  .+++|+.|++++|.++.+ |..++++++|++|++++|...+..|....+.+++|++|++++|.+
T Consensus       104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             EECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             EECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            7777777666 322  346677777777766655 345666677777777664333333333122566777777776666


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ  307 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~  307 (505)
                      ...+         ....+++|+.|++++|.+..+|..                                       + ..
T Consensus       182 ~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------~-~~  212 (487)
T 3oja_A          182 YDVK---------GQVVFAKLKTLDLSSNKLAFMGPE---------------------------------------F-QS  212 (487)
T ss_dssp             CEEE---------CCCCCTTCCEEECCSSCCCEECGG---------------------------------------G-GG
T ss_pred             cccc---------ccccCCCCCEEECCCCCCCCCCHh---------------------------------------H-cC
Confidence            4321         133466677777776666544432                                       1 12


Q ss_pred             hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                      +++|+.|++++|   .+..+|..+  ..+++|+.|++++|+
T Consensus       213 l~~L~~L~Ls~N---~l~~lp~~l--~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          213 AAGVTWISLRNN---KLVLIEKAL--RFSQNLEHFDLRGNG  248 (487)
T ss_dssp             GTTCSEEECTTS---CCCEECTTC--CCCTTCCEEECTTCC
T ss_pred             CCCccEEEecCC---cCcccchhh--ccCCCCCEEEcCCCC
Confidence            688999999998   455678776  778999999999987

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=4.8e-20  Score=193.21  Aligned_cols=128  Identities=13%  Similarity=0.109  Sum_probs=92.9

Q ss_pred             ccCCCcEEEecCCCCccC--CCCC-CCCCccEEEeeecCCCCccc-cChhHHhCCCCccEEEEeCCcCcc-----Ccccc
Q 037920           71 AIKLYTSIVLHDIRTNLL--PEVV-ESPQLKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMS-----LPSSL  141 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~l  141 (505)
                      .++++++|+++++.+...  .... .+++|++|++  ..+...+. ....++.++++|++|++++|.++.     ++...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L--~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL--SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE--ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC--CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            467899999999987322  2222 6899999999  44434333 123445689999999999998765     33333


Q ss_pred             cCCCCCCeeEeeccC--CCC--c-ccccCCCCCcEEEccCC-CCcccchhhhCCCCCCEEeeeCC
Q 037920          142 GLLSNLRTLSLDNCK--LLD--I-TVVRDLKKLEILCLRGS-NIKMLPIEVSELARLRLLGLRDC  200 (505)
Q Consensus       142 ~~l~~L~~L~L~~~~--l~~--~-~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~  200 (505)
                      ..+++|++|++++|.  +..  + ..+..+++|++|++++| .++.+|..+.++++|++|++..+
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            477899999999987  332  2 23356899999999998 56677778888899999986654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=9.6e-18  Score=157.91  Aligned_cols=215  Identities=19%  Similarity=0.271  Sum_probs=164.6

Q ss_pred             EEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeecc
Q 037920           77 SIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNC  155 (505)
Q Consensus        77 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~  155 (505)
                      .++-.+..+..+|... .++|++|++   .++.+..++...|..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus        11 ~~~c~~~~l~~ip~~l-~~~l~~L~l---s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL-PFSTKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEEC---TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCccccCCCC-CCCccEEEC---CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            4555666667777643 367999999   6666777776567889999999999999988654 7889999999999999


Q ss_pred             CCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--cChhhhcCCCCccEEEeeCCCCCCc
Q 037920          156 KLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV--IPANVLSNLSHLEELYIGYNSFGKW  230 (505)
Q Consensus       156 ~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~  230 (505)
                      .+..  +..+..+++|++|++++|+++.++. .+.++++|++|++++| .+..  +|.. ++.+++|++|++++|.+...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcC
Confidence            9888  4778999999999999999988754 6889999999999984 4444  5665 78999999999999988543


Q ss_pred             hhhhhccccccccCCCCcC----EEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHH
Q 037920          231 EVEMEGVKNASLHELKHLT----SLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIV  306 (505)
Q Consensus       231 ~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~  306 (505)
                      .       +..+..+++|+    .|++++|.+..++....                                       .
T Consensus       165 ~-------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------------------------------------~  198 (276)
T 2z62_A          165 Y-------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------------------------------------K  198 (276)
T ss_dssp             C-------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------------------------------------C
T ss_pred             C-------HHHhhhhhhccccceeeecCCCcccccCcccc---------------------------------------C
Confidence            2       24455555555    78888888876654421                                       0


Q ss_pred             HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          307 QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       307 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                       ..+|+.|++++|   .++.+|.... ..+++|+.|++++|+
T Consensus       199 -~~~L~~L~L~~n---~l~~~~~~~~-~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          199 -EIRLKELALDTN---QLKSVPDGIF-DRLTSLQKIWLHTNP  235 (276)
T ss_dssp             -SCCEEEEECCSS---CCSCCCTTTT-TTCCSCCEEECCSSC
T ss_pred             -CCcccEEECCCC---ceeecCHhHh-cccccccEEEccCCc
Confidence             247899999988   4555555432 678999999999987

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=3e-18  Score=160.93  Aligned_cols=179  Identities=22%  Similarity=0.317  Sum_probs=135.6

Q ss_pred             CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCC
Q 037920           67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLS  145 (505)
Q Consensus        67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~  145 (505)
                      .....+++++.+++.++.+..++....+++|++|++   .++.+..++.  +..+++|++|++++|.++.++. .+..++
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l---~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL---GGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLT  109 (272)
T ss_dssp             ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEEC---TTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccccccceeeeeeCCCCcccccccccCCCCcEEEC---CCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCc
Confidence            344567888899998888888887778888888888   4455555542  5788888888888888888655 367888


Q ss_pred             CCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920          146 NLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI  222 (505)
Q Consensus       146 ~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  222 (505)
                      +|++|++++|.+.. + ..++.+++|++|++++|+++.+|.. +.++++|++|++++| .+..++...++.+++|++|++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEEC
Confidence            88888888888877 3 4577888888888888888877644 577888888888884 555666554678888888888


Q ss_pred             eCCCCCCchhhhhccccccccCCCCcCEEEeecccC
Q 037920          223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV  258 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (505)
                      ++|.+.       +..+..+..+++|+.|++++|.+
T Consensus       189 ~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          189 YQNQLK-------SVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CSSCCS-------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCcCC-------ccCHHHHhCCcCCCEEEccCCCc
Confidence            888774       33345577788888888887764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=1.5e-17  Score=156.16  Aligned_cols=193  Identities=22%  Similarity=0.314  Sum_probs=149.1

Q ss_pred             CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEee
Q 037920           74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD  153 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~  153 (505)
                      ++..+.+..+.+........+++|+.|.+   .++.+..++.  +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l---~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIA---NNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEEC---TTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccccccccccceeeeee---CCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence            34445555555555555557888999999   5555666654  578999999999999988864 68889999999999


Q ss_pred             ccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCc
Q 037920          154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW  230 (505)
Q Consensus       154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  230 (505)
                      +|.+.. + ..++.+++|++|++++|+++.++.. +..+++|++|++++| .+..++...++.+++|++|++++|.+.. 
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  171 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS-  171 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc-
Confidence            999888 3 5578899999999999998888654 688899999999884 5667776656889999999999998743 


Q ss_pred             hhhhhccccccccCCCCcCEEEeecccCCCCCCCC-C-CCCCcEEEEEEcce
Q 037920          231 EVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL-F-FPKLQRYKIHIGGY  280 (505)
Q Consensus       231 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~-~~~L~~L~~~~~~~  280 (505)
                            ..+..+..+++|+.|++++|.+..++... . +++|+.|++..+.|
T Consensus       172 ------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          172 ------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             ------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence                  33455788899999999999988777654 2 88888888765443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=1.8e-17  Score=158.49  Aligned_cols=183  Identities=18%  Similarity=0.258  Sum_probs=158.9

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG  142 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~  142 (505)
                      +..++....++++++|++++|.+..++....+++|+.|++   .++.+..++.  +..+++|++|++++|.++.++. +.
T Consensus        53 i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L---~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~  126 (308)
T 1h6u_A           53 VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL---SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LA  126 (308)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC---CSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GT
T ss_pred             ccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEc---cCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hc
Confidence            4555667789999999999999988888779999999999   5566666764  6899999999999999999865 89


Q ss_pred             CCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920          143 LLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI  222 (505)
Q Consensus       143 ~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  222 (505)
                      .+++|++|++++|.+.....++.+++|++|++++|.++.++. +..+++|+.|++++ +.+..++.  +..+++|++|++
T Consensus       127 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L  202 (308)
T 1h6u_A          127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLPNLIEVHL  202 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEEC
T ss_pred             CCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCCCCCEEEc
Confidence            999999999999999995559999999999999999999876 89999999999999 56666665  789999999999


Q ss_pred             eCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920          223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG  264 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  264 (505)
                      ++|.+....         .+..+++|+.|++++|.+...|..
T Consensus       203 ~~N~l~~~~---------~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          203 KNNQISDVS---------PLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             TTSCCCBCG---------GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             cCCccCccc---------cccCCCCCCEEEccCCeeecCCee
Confidence            999885432         378999999999999998776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=9.4e-18  Score=154.39  Aligned_cols=204  Identities=22%  Similarity=0.272  Sum_probs=158.5

Q ss_pred             CccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCc-CccCcc-cccCCCCCCeeEeec-cCCCC-c
Q 037920           85 TNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN-LMSLPS-SLGLLSNLRTLSLDN-CKLLD-I  160 (505)
Q Consensus        85 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~l~~l~~L~~L~L~~-~~l~~-~  160 (505)
                      ++.+|.  -.++++.|++   .++.+..++...|..+++|++|++++|. ++.++. .+..+++|++|++++ |.+.. +
T Consensus        23 l~~ip~--~~~~l~~L~l---~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKL---IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CSSCCC--CCTTCCEEEE---ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             ccccCC--CCCcccEEEE---eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            677777  4458999999   6666777887777899999999999997 888765 788999999999998 88888 3


Q ss_pred             -ccccCCCCCcEEEccCCCCcccchhhhCCCCCC---EEeeeCCCCCCccChhhhcCCCCcc-EEEeeCCCCCCchhhhh
Q 037920          161 -TVVRDLKKLEILCLRGSNIKMLPIEVSELARLR---LLGLRDCRELEVIPANVLSNLSHLE-ELYIGYNSFGKWEVEME  235 (505)
Q Consensus       161 -~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~  235 (505)
                       ..+..+++|++|++++|.++.+|. +..+++|+   +|++++|..+..++...+..+++|+ +|++++|.+..+     
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-----  171 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-----  171 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-----
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-----
Confidence             678899999999999999998886 88888888   9999996478888876688899999 999999887433     


Q ss_pred             ccccccccCCCCcCEEEeeccc-CCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHh-cceeE
Q 037920          236 GVKNASLHELKHLTSLELHIKD-VNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQL-QGIED  313 (505)
Q Consensus       236 ~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~-~~L~~  313 (505)
                         |......++|+.|++++|. +..++....                                       ..+ ++|+.
T Consensus       172 ---~~~~~~~~~L~~L~L~~n~~l~~i~~~~~---------------------------------------~~l~~~L~~  209 (239)
T 2xwt_C          172 ---QGYAFNGTKLDAVYLNKNKYLTVIDKDAF---------------------------------------GGVYSGPSL  209 (239)
T ss_dssp             ---CTTTTTTCEEEEEECTTCTTCCEECTTTT---------------------------------------TTCSBCCSE
T ss_pred             ---CHhhcCCCCCCEEEcCCCCCcccCCHHHh---------------------------------------hccccCCcE
Confidence               3333333789999999884 776654321                                       114 67888


Q ss_pred             EeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          314 LGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       314 L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                      |++++|   .++.+|..    .+++|+.|++.++.
T Consensus       210 L~l~~N---~l~~l~~~----~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          210 LDVSQT---SVTALPSK----GLEHLKELIARNTW  237 (239)
T ss_dssp             EECTTC---CCCCCCCT----TCTTCSEEECTTC-
T ss_pred             EECCCC---ccccCChh----HhccCceeeccCcc
Confidence            888887   44455543    47888888887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=2e-17  Score=156.73  Aligned_cols=177  Identities=24%  Similarity=0.358  Sum_probs=146.5

Q ss_pred             cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920           68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL  147 (505)
Q Consensus        68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  147 (505)
                      ....+++++++++++|.+..++....+++|++|++   .++.+..++.  +..+++|++|++++|.++.++. +..+++|
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L---~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L  114 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL---NGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKL  114 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEc---cCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence            34567889999999999988887778999999999   5666666666  6889999999999999888754 8889999


Q ss_pred             CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      ++|++++|.+..++.++.+++|++|++++|+++.+ ..+..+++|++|++++ +.+..++.  +..+++|+.|++++|.+
T Consensus       115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcC
Confidence            99999999988877888899999999999988888 5788899999999988 45666655  78899999999999887


Q ss_pred             CCchhhhhccccccccCCCCcCEEEeecccCCCCCC
Q 037920          228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR  263 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~  263 (505)
                      ...        + .+..+++|+.|++++|.+...|.
T Consensus       191 ~~l--------~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          191 SDL--------R-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CBC--------G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCC--------h-hhccCCCCCEEECcCCcccCCcc
Confidence            543        2 37888999999999888766553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=4.8e-17  Score=150.79  Aligned_cols=176  Identities=23%  Similarity=0.351  Sum_probs=145.6

Q ss_pred             CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeE
Q 037920           73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLS  151 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~  151 (505)
                      ...++++++++.+..+|.... ++++.|++   .++.+..++...|.++++|++|++++|.++.++. .+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDL---QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEEC---TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEc---cCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            456789999999988886543 78999999   6666666766667899999999999999998654 578999999999


Q ss_pred             eeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920          152 LDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       152 L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      +++|.+.. + ..+..+++|++|++++|+++.+|.. +..+++|++|++++ +.+..++...++.+++|++|++++|.+.
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            99999888 4 6778999999999999999988755 58899999999998 5677777755889999999999999884


Q ss_pred             CchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920          229 KWEVEMEGVKNASLHELKHLTSLELHIKDVNT  260 (505)
Q Consensus       229 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  260 (505)
                      .       ..+..+..+++|+.|++++|.+..
T Consensus       169 ~-------~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          169 S-------VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             C-------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             c-------cCHHHHhCCCCCCEEEeeCCceeC
Confidence            3       334568888999999999888754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=2.6e-18  Score=174.81  Aligned_cols=177  Identities=13%  Similarity=0.080  Sum_probs=148.3

Q ss_pred             cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920           68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL  147 (505)
Q Consensus        68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  147 (505)
                      ....++++++|++++|.+...++...+++|++|++   +++.+..++.     .++|++|++++|.++.++..  .+++|
T Consensus        53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L---s~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~--~l~~L  122 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL---NNNYVQELLV-----GPSIETLHAANNNISRVSCS--RGQGK  122 (487)
T ss_dssp             GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEEC---CSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC--CCSSC
T ss_pred             HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEe---cCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc--ccCCC
Confidence            34578899999999999976666779999999999   6666666653     38999999999999987653  57899


Q ss_pred             CeeEeeccCCCC--cccccCCCCCcEEEccCCCCccc-chhhh-CCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920          148 RTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKML-PIEVS-ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG  223 (505)
Q Consensus       148 ~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  223 (505)
                      ++|++++|.+.+  +..++.+++|++|++++|.++.. |..+. .+++|++|++++ +.+..++.  ...+++|+.|+++
T Consensus       123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~--~~~l~~L~~L~Ls  199 (487)
T 3oja_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKG--QVVFAKLKTLDLS  199 (487)
T ss_dssp             EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCCEEEC--CCCCTTCCEEECC
T ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC-Cccccccc--cccCCCCCEEECC
Confidence            999999999998  56889999999999999999875 55665 799999999999 45666665  4679999999999


Q ss_pred             CCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC
Q 037920          224 YNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL  265 (505)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~  265 (505)
                      +|.+..        +|..+..+++|+.|++++|.+..+|..+
T Consensus       200 ~N~l~~--------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l  233 (487)
T 3oja_A          200 SNKLAF--------MGPEFQSAAGVTWISLRNNKLVLIEKAL  233 (487)
T ss_dssp             SSCCCE--------ECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CCCCCC--------CCHhHcCCCCccEEEecCCcCcccchhh
Confidence            998843        3445889999999999999998877653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=159.87  Aligned_cols=197  Identities=15%  Similarity=0.136  Sum_probs=103.7

Q ss_pred             CCCccEEEEeCCcCcc-Ccccc--cCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCcccc-hhhhCCC
Q 037920          121 MMQVRVINLTNINLMS-LPSSL--GLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIKMLP-IEVSELA  190 (505)
Q Consensus       121 l~~L~~L~l~~~~~~~-l~~~l--~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~  190 (505)
                      +++|++|++++|.+.. .|..+  ..+++|++|++++|.+..  +    ..+..+++|++|++++|+++.++ ..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3456666666666554 34444  556666666666666554  1    22335666666666666665553 3455666


Q ss_pred             CCCEEeeeCCCCCCc--cCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccc-cccCCCCcCEEEeecccCCCC-CCCC
Q 037920          191 RLRLLGLRDCRELEV--IPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA-SLHELKHLTSLELHIKDVNTL-PRGL  265 (505)
Q Consensus       191 ~L~~L~l~~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l-~~~~  265 (505)
                      +|++|++++|...+.  ++. ..++.+++|++|++++|.++..+.     .+. .+..+++|+.|++++|.+... |..+
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----VCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----HHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----HHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            666666666432221  111 112455666666666665543211     111 134556666666666666543 4333


Q ss_pred             C-C---CCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccE
Q 037920          266 F-F---PKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKH  341 (505)
Q Consensus       266 ~-~---~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~  341 (505)
                      . +   ++|+.|+++.+...                 ..+..+   +++|+.|++++|   .++.+|. +  ..+++|+.
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~-----------------~lp~~~---~~~L~~L~Ls~N---~l~~~~~-~--~~l~~L~~  298 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE-----------------QVPKGL---PAKLRVLDLSSN---RLNRAPQ-P--DELPEVDN  298 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC-----------------SCCSCC---CSCCSCEECCSC---CCCSCCC-T--TSCCCCSC
T ss_pred             HhccCcCcCCEEECCCCCCC-----------------chhhhh---cCCCCEEECCCC---cCCCCch-h--hhCCCccE
Confidence            2 2   45555554321100                 111111   367888888887   3334433 2  56788888


Q ss_pred             EEEeCCC
Q 037920          342 LHIWNHP  348 (505)
Q Consensus       342 L~l~~~~  348 (505)
                      |++++|+
T Consensus       299 L~L~~N~  305 (310)
T 4glp_A          299 LTLDGNP  305 (310)
T ss_dssp             EECSSTT
T ss_pred             EECcCCC
Confidence            8888876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=1.6e-17  Score=161.14  Aligned_cols=128  Identities=17%  Similarity=0.184  Sum_probs=79.8

Q ss_pred             CCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEee
Q 037920          122 MQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGL  197 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l  197 (505)
                      ++++.|+++++.+...+..+..+++|++|++++|.+..   +..+..+++|++|++++|.++ ..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            66777777777766655556667777777777776654   355666777777777777665 34556666777777777


Q ss_pred             eCCCCCCc--cChhhhcCCCCccEEEeeCC-CCCCchhhhhccccccccCCC-CcCEEEeecc
Q 037920          198 RDCRELEV--IPANVLSNLSHLEELYIGYN-SFGKWEVEMEGVKNASLHELK-HLTSLELHIK  256 (505)
Q Consensus       198 ~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~  256 (505)
                      ++|..++.  ++.. +..+++|++|++++| .+.+      ..++..+..++ +|+.|++++|
T Consensus       150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~------~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          150 SGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE------KHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH------HHHHHHHHHSCTTCCEEECCSC
T ss_pred             CCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh------HHHHHHHHhcccCCCEEEeCCC
Confidence            77644442  3333 566677777777766 5531      12334455666 6666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2.6e-16  Score=149.01  Aligned_cols=183  Identities=22%  Similarity=0.243  Sum_probs=153.7

Q ss_pred             EEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCC
Q 037920           78 IVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL  157 (505)
Q Consensus        78 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l  157 (505)
                      +.+..+.+..+.....+++|+.|++   .++.+..++.  +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus        29 ~~l~~~~~~~~~~~~~l~~L~~L~l---~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAVTQNELNSIDQIIA---NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEEC---TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCcccccchhhcCcccEEEc---cCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence            3444455555444557899999999   6666677765  6889999999999999999877 99999999999999999


Q ss_pred             CCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhcc
Q 037920          158 LDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV  237 (505)
Q Consensus       158 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  237 (505)
                      ..++.++.+++|++|++++|+++.++ .+..+++|++|++++ +.+..++.  ++.+++|++|++++|.+....      
T Consensus       103 ~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~------  172 (291)
T 1h6t_A          103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDIV------  172 (291)
T ss_dssp             CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCCCG------
T ss_pred             CCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccccch------
Confidence            99777999999999999999999884 789999999999999 45666643  899999999999999885432      


Q ss_pred             ccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcc
Q 037920          238 KNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGG  279 (505)
Q Consensus       238 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~  279 (505)
                        . +..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus       173 --~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          173 --P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             --G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             --h-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence              2 88999999999999999988764459999999997654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=3.4e-17  Score=158.80  Aligned_cols=226  Identities=18%  Similarity=0.151  Sum_probs=156.7

Q ss_pred             CCccEEEEeCCcCccCcccccCC--CCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEe
Q 037920          122 MQVRVINLTNINLMSLPSSLGLL--SNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLG  196 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~l~~~l~~l--~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~  196 (505)
                      ..++.++++++.+.  +..+..+  +++++|++.+|.+.+ +..+..+++|++|++++|.++.  +|..+..+++|++|+
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            45788888888776  4556666  889999999999888 6667889999999999998763  677888999999999


Q ss_pred             eeCCCCCCccChhhhcCCCCccEEEeeCC-CCCCchhhhhccccccccCCCCcCEEEeecc-cCCCCCCCCCCCCCcEEE
Q 037920          197 LRDCRELEVIPANVLSNLSHLEELYIGYN-SFGKWEVEMEGVKNASLHELKHLTSLELHIK-DVNTLPRGLFFPKLQRYK  274 (505)
Q Consensus       197 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~~~~~L~~L~  274 (505)
                      +++|......+.. ++.+++|++|++++| .+.+      ..++..+..+++|+.|++++| .+...             
T Consensus       125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~------~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------  184 (336)
T 2ast_B          125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE------FALQTLLSSCSRLDELNLSWCFDFTEK-------------  184 (336)
T ss_dssp             CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH------HHHHHHHHHCTTCCEEECCCCTTCCHH-------------
T ss_pred             CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH------HHHHHHHhcCCCCCEEcCCCCCCcChH-------------
Confidence            9997543345554 788999999999988 4531      134556778899999999887 64320             


Q ss_pred             EEEcceeecccccceEEecCCCCccchhhHHHHhc-ceeEEeecCCCC-CCcchhhhhhhccCCCCccEEEEeCCCCCCc
Q 037920          275 IHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ-GIEDLGLSKLPE-QDVDYFVNELAKVGPSQLKHLHIWNHPPNPA  352 (505)
Q Consensus       275 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~-~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~  352 (505)
                                              .. ......++ +|+.|++++|.. -....++..+  ..+++|++|++++|..++.
T Consensus       185 ------------------------~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          185 ------------------------HV-QVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             ------------------------HH-HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCG
T ss_pred             ------------------------HH-HHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--hhCCCCCEEeCCCCCcCCH
Confidence                                    01 11233367 888888888710 1114455555  5678888888888763322


Q ss_pred             cccccccchhcchhhhhhhhcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEccc
Q 037920          353 ESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNC  428 (505)
Q Consensus       353 ~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c  428 (505)
                      ..+                        .....+++|++|++++| .+.....        ..+..+++|++|++++|
T Consensus       238 ~~~------------------------~~l~~l~~L~~L~l~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          238 DCF------------------------QEFFQLNYLQHLSLSRCYDIIPETL--------LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGG------------------------GGGGGCTTCCEEECTTCTTCCGGGG--------GGGGGCTTCCEEECTTS
T ss_pred             HHH------------------------HHHhCCCCCCEeeCCCCCCCCHHHH--------HHHhcCCCCCEEeccCc
Confidence            211                        11235688888888888 4433211        01567888888888888

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=2.4e-16  Score=163.64  Aligned_cols=178  Identities=24%  Similarity=0.351  Sum_probs=153.4

Q ss_pred             CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920           67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN  146 (505)
Q Consensus        67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~  146 (505)
                      .....+++++.|++++|.+..++....+++|+.|++   ..+.+..++.  +..+++|+.|++++|.+..+| .+..+++
T Consensus        37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L---s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~  110 (605)
T 1m9s_A           37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL---NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKK  110 (605)
T ss_dssp             ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEEC---TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTT
T ss_pred             cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEe---eCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCC
Confidence            345678899999999999999988889999999999   6666666766  689999999999999999876 6899999


Q ss_pred             CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCC
Q 037920          147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS  226 (505)
Q Consensus       147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  226 (505)
                      |++|+|++|.+..++.+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..++.  +..+++|+.|++++|.
T Consensus       111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCC
Confidence            999999999999987899999999999999999988 57899999999999995 5555555  7899999999999998


Q ss_pred             CCCchhhhhccccccccCCCCcCEEEeecccCCCCCC
Q 037920          227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR  263 (505)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~  263 (505)
                      +...         ..+..+++|+.|++++|.+...|.
T Consensus       187 i~~l---------~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          187 ISDL---------RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCBC---------GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCC---------hHHccCCCCCEEEccCCcCcCCcc
Confidence            8543         248889999999999998765554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=1.6e-15  Score=147.72  Aligned_cols=239  Identities=15%  Similarity=0.145  Sum_probs=157.8

Q ss_pred             cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCc-ccch-hhhCCCCCCEEeeeCC
Q 037920          125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIK-MLPI-EVSELARLRLLGLRDC  200 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~  200 (505)
                      ++++.+++.++++|..+  .+++++|+|++|.++. + ..+..+++|++|++++|++. .+|. .+.++++|+++...++
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56788888888888765  3678888888888877 4 45778888888888888764 3443 4567777776655555


Q ss_pred             CCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeec-ccCCCCCCCCCCCCCcEEEEEEcc
Q 037920          201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI-KDVNTLPRGLFFPKLQRYKIHIGG  279 (505)
Q Consensus       201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~~~~~~L~~L~~~~~~  279 (505)
                      +.+..++.+.+..+++|++|++++|.+...+       +..+....++..+++.. +.+..++...              
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-------~~~~~~~~~l~~l~l~~~~~i~~l~~~~--------------  148 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-------DVHKIHSLQKVLLDIQDNINIHTIERNS--------------  148 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCC-------CCTTCCBSSCEEEEEESCTTCCEECTTS--------------
T ss_pred             CcccccCchhhhhccccccccccccccccCC-------chhhcccchhhhhhhccccccccccccc--------------
Confidence            6677776655677778888888777764322       23344445566666653 3444443321              


Q ss_pred             eeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc
Q 037920          280 YYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE  359 (505)
Q Consensus       280 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~  359 (505)
                                              +......++.|++++|   .++.++...  -...+|+++.+.++..+.     .+.
T Consensus       149 ------------------------f~~~~~~l~~L~L~~N---~i~~i~~~~--f~~~~L~~l~l~~~n~l~-----~i~  194 (350)
T 4ay9_X          149 ------------------------FVGLSFESVILWLNKN---GIQEIHNSA--FNGTQLDELNLSDNNNLE-----ELP  194 (350)
T ss_dssp             ------------------------STTSBSSCEEEECCSS---CCCEECTTS--STTEEEEEEECTTCTTCC-----CCC
T ss_pred             ------------------------hhhcchhhhhhccccc---cccCCChhh--ccccchhHHhhccCCccc-----CCC
Confidence                                    1111346788899887   566777665  345678888887655221     000


Q ss_pred             chhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccc
Q 037920          360 STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVEN  439 (505)
Q Consensus       360 l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~  439 (505)
                                      ..   ....+++|+.|++++|+++.++.           ..+.+|++|.+.++..++.++.   
T Consensus       195 ----------------~~---~f~~l~~L~~LdLs~N~l~~lp~-----------~~~~~L~~L~~l~~~~l~~lP~---  241 (350)
T 4ay9_X          195 ----------------ND---VFHGASGPVILDISRTRIHSLPS-----------YGLENLKKLRARSTYNLKKLPT---  241 (350)
T ss_dssp             ----------------TT---TTTTEECCSEEECTTSCCCCCCS-----------SSCTTCCEEECTTCTTCCCCCC---
T ss_pred             ----------------HH---HhccCcccchhhcCCCCcCccCh-----------hhhccchHhhhccCCCcCcCCC---
Confidence                            11   11357889999999999888864           3477888888888888887732   


Q ss_pred             ccccccccccccccccccccC
Q 037920          440 QEERKNSIVIFPQLQYLKMDD  460 (505)
Q Consensus       440 ~~~~~~~~~~~p~L~~L~l~~  460 (505)
                             ...+++|+.+++.+
T Consensus       242 -------l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          242 -------LEKLVALMEASLTY  255 (350)
T ss_dssp             -------TTTCCSCCEEECSC
T ss_pred             -------chhCcChhhCcCCC
Confidence                   34568888888754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=6.5e-18  Score=167.17  Aligned_cols=137  Identities=15%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             hCCCCccEEEEeCCcCcc-----CcccccCCCCCCeeEeeccCCCC-----ccc-------ccCCCCCcEEEccCCCCcc
Q 037920          119 ERMMQVRVINLTNINLMS-----LPSSLGLLSNLRTLSLDNCKLLD-----ITV-------VRDLKKLEILCLRGSNIKM  181 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~-----~~~-------i~~l~~L~~L~l~~~~l~~  181 (505)
                      ..+++|+.|++++|.+..     ++..+..+++|++|++++|.+..     |..       +..+++|++|++++|.++.
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            566777777777776654     23345567777777777764432     222       2567777777777777664


Q ss_pred             -----cchhhhCCCCCCEEeeeCCCCCCccChhh----hcCC---------CCccEEEeeCCCCCCchhhhhcccccccc
Q 037920          182 -----LPIEVSELARLRLLGLRDCRELEVIPANV----LSNL---------SHLEELYIGYNSFGKWEVEMEGVKNASLH  243 (505)
Q Consensus       182 -----lp~~i~~l~~L~~L~l~~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  243 (505)
                           +|..+.++++|++|++++|. ++......    +..+         ++|++|++++|.+.....   ..+...+.
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~  184 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM---KEWAKTFQ  184 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH---HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH---HHHHHHHH
Confidence                 56667777777777777743 22211111    2223         677777777777642111   11223556


Q ss_pred             CCCCcCEEEeecccCC
Q 037920          244 ELKHLTSLELHIKDVN  259 (505)
Q Consensus       244 ~l~~L~~L~l~~~~~~  259 (505)
                      .+++|+.|++++|.+.
T Consensus       185 ~~~~L~~L~L~~n~l~  200 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIR  200 (386)
T ss_dssp             HCTTCCEEECCSSCCC
T ss_pred             hCCCcCEEECcCCCCC
Confidence            6777777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=5.8e-17  Score=158.79  Aligned_cols=138  Identities=16%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             HhCCCCccEEEEeCCcCccCc-----ccccCCC-CCCeeEeeccCCCC--cccccCC-----CCCcEEEccCCCCcccch
Q 037920          118 FERMMQVRVINLTNINLMSLP-----SSLGLLS-NLRTLSLDNCKLLD--ITVVRDL-----KKLEILCLRGSNIKMLPI  184 (505)
Q Consensus       118 ~~~l~~L~~L~l~~~~~~~l~-----~~l~~l~-~L~~L~L~~~~l~~--~~~i~~l-----~~L~~L~l~~~~l~~lp~  184 (505)
                      +...++|++|++++|.++..+     ..+..++ +|++|++++|.+..  +..++.+     ++|++|++++|.++..+.
T Consensus        18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            344444666666666665543     3455555 66666666666554  3334332     666666666666654322


Q ss_pred             h-----hhCC-CCCCEEeeeCCCCCCccChhhh----cC-CCCccEEEeeCCCCCCchhhhhccccccccCCC-CcCEEE
Q 037920          185 E-----VSEL-ARLRLLGLRDCRELEVIPANVL----SN-LSHLEELYIGYNSFGKWEVEMEGVKNASLHELK-HLTSLE  252 (505)
Q Consensus       185 ~-----i~~l-~~L~~L~l~~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~  252 (505)
                      .     +..+ ++|++|++++| .++..+...+    .. .++|++|++++|.+.+...   ..++..+..++ +|+.|+
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~~~~L~~L~  173 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS---DELIQILAAIPANVNSLN  173 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEE
T ss_pred             HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH---HHHHHHHhcCCccccEee
Confidence            1     3334 56666666663 3344333212    22 2466666666665543211   12333444444 666666


Q ss_pred             eecccCC
Q 037920          253 LHIKDVN  259 (505)
Q Consensus       253 l~~~~~~  259 (505)
                      +++|.+.
T Consensus       174 Ls~n~l~  180 (362)
T 3goz_A          174 LRGNNLA  180 (362)
T ss_dssp             CTTSCGG
T ss_pred             ecCCCCc
Confidence            6666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=2.3e-15  Score=146.68  Aligned_cols=225  Identities=15%  Similarity=0.115  Sum_probs=143.6

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccE-EEEeCCcCccC-c
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRV-INLTNINLMSL-P  138 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~l-~  138 (505)
                      ++.++. ..++++++|++++|+++.++..  .++++|++|++  +++...+.++...|.++++++. +.+.+|.++.+ |
T Consensus        21 Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L--s~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           21 VTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI--SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             CCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEE--ECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEEC--cCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            444443 2456778888888888777653  37778888888  4444456666666777777654 55566777775 3


Q ss_pred             ccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCC-CCcccch-hhhCC-CCCCEEeeeCCCCCCccChhhhcC
Q 037920          139 SSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGS-NIKMLPI-EVSEL-ARLRLLGLRDCRELEVIPANVLSN  213 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~  213 (505)
                      ..+..+++|++|++++|.+.. + ..+....++..|++.++ +++.++. .+..+ ..++.|++++ +.++.++.. +..
T Consensus        98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~  175 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFN  175 (350)
T ss_dssp             TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SST
T ss_pred             hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hcc
Confidence            456777888888888877776 3 34445566777777653 5666653 34444 3577777777 566677765 455


Q ss_pred             CCCccEEEeeCCCCCCchhhhhcccc-ccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEe
Q 037920          214 LSHLEELYIGYNSFGKWEVEMEGVKN-ASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKI  292 (505)
Q Consensus       214 l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l  292 (505)
                      ..+|+++++.++..       .+.+| ..+..+++|+.|++++|.+..+|...                           
T Consensus       176 ~~~L~~l~l~~~n~-------l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---------------------------  221 (350)
T 4ay9_X          176 GTQLDELNLSDNNN-------LEELPNDVFHGASGPVILDISRTRIHSLPSYG---------------------------  221 (350)
T ss_dssp             TEEEEEEECTTCTT-------CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---------------------------
T ss_pred             ccchhHHhhccCCc-------ccCCCHHHhccCcccchhhcCCCCcCccChhh---------------------------
Confidence            66777777765332       12233 34677778888888888777777643                           


Q ss_pred             cCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeC
Q 037920          293 CPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWN  346 (505)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~  346 (505)
                                     +.+|+.|.+.++  ...+.+|. +  ..+++|+.+++.+
T Consensus       222 ---------------~~~L~~L~~l~~--~~l~~lP~-l--~~l~~L~~l~l~~  255 (350)
T 4ay9_X          222 ---------------LENLKKLRARST--YNLKKLPT-L--EKLVALMEASLTY  255 (350)
T ss_dssp             ---------------CTTCCEEECTTC--TTCCCCCC-T--TTCCSCCEEECSC
T ss_pred             ---------------hccchHhhhccC--CCcCcCCC-c--hhCcChhhCcCCC
Confidence                           345555555555  45566663 3  5677777777755

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=8.8e-16  Score=136.64  Aligned_cols=149  Identities=17%  Similarity=0.216  Sum_probs=96.6

Q ss_pred             cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCCCC
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSNLR  148 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L~  148 (505)
                      ..+++++++++++|.+..++....+++|++|++   .++....++.  +..+++|++|++++|.++. .|..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l---~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTI---NNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEE---ESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEc---cCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            456778888888887777775557777777777   3334444432  4667777777777777665 556666777777


Q ss_pred             eeEeeccCCCC--cccccCCCCCcEEEccCCC-CcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920          149 TLSLDNCKLLD--ITVVRDLKKLEILCLRGSN-IKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN  225 (505)
Q Consensus       149 ~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  225 (505)
                      +|++++|.+..  +..++.+++|++|++++|. ++.+| .+..+++|++|++++ +.+..++.  +..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCc
Confidence            77777777665  5666677777777777765 66665 566667777777766 34444542  566666666666666


Q ss_pred             CC
Q 037920          226 SF  227 (505)
Q Consensus       226 ~~  227 (505)
                      .+
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.65  E-value=6.3e-17  Score=160.03  Aligned_cols=236  Identities=14%  Similarity=0.099  Sum_probs=156.3

Q ss_pred             cccCCCcEEEecCCCCccC-----C-CCCCCCCccEEEeeecCC--CC-ccccChhH------HhCCCCccEEEEeCCcC
Q 037920           70 SAIKLYTSIVLHDIRTNLL-----P-EVVESPQLKLLFICADQE--SS-SLTIPNKF------FERMMQVRVINLTNINL  134 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~~--~~-~~~~~~~~------~~~l~~L~~L~l~~~~~  134 (505)
                      ..++++++|++++|.+...     . ....+++|++|++  .++  +. .+.+|..+      +..+++|++|++++|.+
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L--s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF--SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEEC--CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeC--cccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            3467788899988887432     1 1336888888888  332  11 22334433      36788888888888888


Q ss_pred             cc-----CcccccCCCCCCeeEeeccCCCC--ccc----ccCC---------CCCcEEEccCCCCc--ccc---hhhhCC
Q 037920          135 MS-----LPSSLGLLSNLRTLSLDNCKLLD--ITV----VRDL---------KKLEILCLRGSNIK--MLP---IEVSEL  189 (505)
Q Consensus       135 ~~-----l~~~l~~l~~L~~L~L~~~~l~~--~~~----i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l  189 (505)
                      +.     +|..+..+++|++|++++|.+..  +..    +..+         ++|++|++++|+++  .+|   ..+..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            76     66678888888888888888764  233    3333         78888888888876  334   466778


Q ss_pred             CCCCEEeeeCCCCCCc-----cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920          190 ARLRLLGLRDCRELEV-----IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG  264 (505)
Q Consensus       190 ~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  264 (505)
                      ++|++|++++| .+..     +....+..+++|++|++++|.+....   .+.++..+..+++|+.|++++|.+..... 
T Consensus       187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-  261 (386)
T 2ca6_A          187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARGA-  261 (386)
T ss_dssp             TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHHH-
T ss_pred             CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCchhhH-
Confidence            88888888885 3331     22212678888888888888774321   14556677888888888888887543110 


Q ss_pred             CCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHH-HHhcceeEEeecCCCCCCcc----hhhhhhhccCCCCc
Q 037920          265 LFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI-VQLQGIEDLGLSKLPEQDVD----YFVNELAKVGPSQL  339 (505)
Q Consensus       265 ~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~l~~~~l~~L  339 (505)
                                                       ...+.++. ..+++|+.|++++|  ....    .+|..+. ..+++|
T Consensus       262 ---------------------------------~~l~~~l~~~~~~~L~~L~L~~n--~i~~~g~~~l~~~l~-~~l~~L  305 (386)
T 2ca6_A          262 ---------------------------------AAVVDAFSKLENIGLQTLRLQYN--EIELDAVRTLKTVID-EKMPDL  305 (386)
T ss_dssp             ---------------------------------HHHHHHHHTCSSCCCCEEECCSS--CCBHHHHHHHHHHHH-HHCTTC
T ss_pred             ---------------------------------HHHHHHHhhccCCCeEEEECcCC--cCCHHHHHHHHHHHH-hcCCCc
Confidence                                             00111111 11678999999998  3333    3676652 347999


Q ss_pred             cEEEEeCCC
Q 037920          340 KHLHIWNHP  348 (505)
Q Consensus       340 ~~L~l~~~~  348 (505)
                      ++|++++|.
T Consensus       306 ~~L~l~~N~  314 (386)
T 2ca6_A          306 LFLELNGNR  314 (386)
T ss_dssp             CEEECTTSB
T ss_pred             eEEEccCCc
Confidence            999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=6.7e-16  Score=147.83  Aligned_cols=193  Identities=13%  Similarity=0.155  Sum_probs=141.6

Q ss_pred             cCCCcEEEecCCCCccC-CCC---CCCCCccEEEeeecCCCCccccC---hhHHhCCCCccEEEEeCCcCccCc-ccccC
Q 037920           72 IKLYTSIVLHDIRTNLL-PEV---VESPQLKLLFICADQESSSLTIP---NKFFERMMQVRVINLTNINLMSLP-SSLGL  143 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l-~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~  143 (505)
                      .+++++|++++|.+... +..   ..+++|++|++  +++......+   ...+..+++|++|++++|.+..++ ..+..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~L--s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRL--RNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEE--ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEe--ecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            45699999999988543 333   57889999999  4444333322   222357899999999999998755 57888


Q ss_pred             CCCCCeeEeeccCCCC----c--ccccCCCCCcEEEccCCCCcccchh----hhCCCCCCEEeeeCCCCCCccChhhhcC
Q 037920          144 LSNLRTLSLDNCKLLD----I--TVVRDLKKLEILCLRGSNIKMLPIE----VSELARLRLLGLRDCRELEVIPANVLSN  213 (505)
Q Consensus       144 l~~L~~L~L~~~~l~~----~--~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~~~~~~~~  213 (505)
                      +++|++|++++|.+.+    +  ..++.+++|++|++++|+++.++..    +..+++|++|++++|......|.. +..
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~  246 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APR  246 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHh
Confidence            9999999999998654    1  3346888999999999998876542    577899999999985433333554 455


Q ss_pred             C---CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEE
Q 037920          214 L---SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHI  277 (505)
Q Consensus       214 l---~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~  277 (505)
                      +   ++|++|++++|.+..        +|..+.  ++|+.|++++|.+..+|....+++|+.|++..
T Consensus       247 ~~~~~~L~~L~Ls~N~l~~--------lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLEQ--------VPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDG  303 (310)
T ss_dssp             CCCCTTCCCEECCSSCCCS--------CCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSS
T ss_pred             ccCcCcCCEEECCCCCCCc--------hhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcC
Confidence            5   689999999998843        344443  78999999999998876644488888888753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=1.1e-15  Score=137.28  Aligned_cols=170  Identities=22%  Similarity=0.319  Sum_probs=119.4

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~  154 (505)
                      +.++.+++.+..+|.. -.++|+.|++   .++.+..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-IPAQTTYLDL---ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCC-CCCCCcEEEc---CCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            4566666766666643 3457888888   55555566666667788888888888888776653 57788888888888


Q ss_pred             cCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920          155 CKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE  231 (505)
Q Consensus       155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  231 (505)
                      |.+.. + ..++.+++|++|++++|+++.++.. +.++++|++|++++ +.+..++...+..+++|++|++++|.+    
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~----  160 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW----  160 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe----
Confidence            88777 3 4467788888888888888777654 57788888888887 455566655467788888888887754    


Q ss_pred             hhhhccccccccCCCCcCEEEeecccCC-CCCCC
Q 037920          232 VEMEGVKNASLHELKHLTSLELHIKDVN-TLPRG  264 (505)
Q Consensus       232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~  264 (505)
                                .+.+++|+.|+++.|.+. .+|.+
T Consensus       161 ----------~~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          161 ----------DCTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             ----------CCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             ----------ecCCCCHHHHHHHHHhCCceeecc
Confidence                      245566777777766654 45554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=3.5e-15  Score=138.15  Aligned_cols=162  Identities=21%  Similarity=0.286  Sum_probs=137.7

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-  139 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-  139 (505)
                      +..++. ...+++++|++++|.+..++.  ...+++|++|++   .++.+..++...|..+++|++|++++|.++.+|. 
T Consensus        26 l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  101 (251)
T 3m19_A           26 LDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNL---DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG  101 (251)
T ss_dssp             CSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC---TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             ccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEEC---CCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence            444443 345789999999999987765  348999999999   6666777777777999999999999999999764 


Q ss_pred             cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCC
Q 037920          140 SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSH  216 (505)
Q Consensus       140 ~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  216 (505)
                      .+..+++|++|++++|.+.. + ..++.+++|++|++++|+++.+|. .+..+++|++|++++ +.+..++...+..+++
T Consensus       102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred             HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCC
Confidence            57899999999999999998 4 457899999999999999999876 688999999999999 5667777655889999


Q ss_pred             ccEEEeeCCCCCC
Q 037920          217 LEELYIGYNSFGK  229 (505)
Q Consensus       217 L~~L~l~~~~~~~  229 (505)
                      |+.|++++|.+..
T Consensus       181 L~~L~l~~N~~~c  193 (251)
T 3m19_A          181 LQTITLFGNQFDC  193 (251)
T ss_dssp             CCEEECCSCCBCT
T ss_pred             CCEEEeeCCceeC
Confidence            9999999998754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=1.2e-15  Score=135.73  Aligned_cols=150  Identities=16%  Similarity=0.265  Sum_probs=117.1

Q ss_pred             CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCc
Q 037920           93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLE  170 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~  170 (505)
                      .+++|+.|++   .++.+..++.  +..+++|++|++++|.++.++ .+..+++|++|++++|.+..  +..++.+++|+
T Consensus        42 ~l~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITL---ANINVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEE---ESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hcCCccEEec---cCCCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            6778888988   4455556663  578889999999988776664 67888899999999888876  68888889999


Q ss_pred             EEEccCCCCcc-cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcC
Q 037920          171 ILCLRGSNIKM-LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLT  249 (505)
Q Consensus       171 ~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  249 (505)
                      +|++++|.++. .|..+..+++|++|++++|..++.++.  +..+++|++|++++|.+.+.        + .+..+++|+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~--------~-~l~~l~~L~  184 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY--------R-GIEDFPKLN  184 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC--------T-TGGGCSSCC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh--------H-HhccCCCCC
Confidence            99999888875 467788888999999988655777763  78888899999988887543        2 477888888


Q ss_pred             EEEeecccCC
Q 037920          250 SLELHIKDVN  259 (505)
Q Consensus       250 ~L~l~~~~~~  259 (505)
                      .|++++|.+.
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            9988888764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=3e-16  Score=146.31  Aligned_cols=171  Identities=19%  Similarity=0.228  Sum_probs=111.4

Q ss_pred             cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeE
Q 037920           72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLS  151 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  151 (505)
                      +.++..+++.++.+..++....+++|+.|++   .++.+..++.  +..+++|++|++++|.++.++. +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNG---DNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEEC---TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEEC---cCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            4445555566666666554456677777777   4445555552  4667777777777777777665 67777777777


Q ss_pred             eeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920          152 LDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE  231 (505)
Q Consensus       152 L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  231 (505)
                      +++|.+..++.+.. ++|++|++++|+++.++ .+.++++|+.|++++ +.+..++.  ++.+++|++|++++|.+... 
T Consensus        92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCBC-
T ss_pred             CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcch-
Confidence            77777766333333 77777777777777664 467777777777777 44555543  67777777777777766432 


Q ss_pred             hhhhccccccccCCCCcCEEEeecccCCCCC
Q 037920          232 VEMEGVKNASLHELKHLTSLELHIKDVNTLP  262 (505)
Q Consensus       232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~  262 (505)
                              ..+..+++|+.|++++|.+...|
T Consensus       166 --------~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 --------GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             --------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             --------HHhccCCCCCEEeCCCCcccCCc
Confidence                    34667777777777777665444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=1.7e-15  Score=157.29  Aligned_cols=186  Identities=22%  Similarity=0.228  Sum_probs=155.5

Q ss_pred             CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeec
Q 037920           75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDN  154 (505)
Q Consensus        75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~  154 (505)
                      +..+.+..+.+..+.....+++|+.|.+   .++.+..++.  +..+++|+.|++++|.+..+++ +..+++|++|+|++
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIA---NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBC---TTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEEC---cCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence            4444555555555555558899999999   6666777765  6899999999999999999877 89999999999999


Q ss_pred             cCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhh
Q 037920          155 CKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEM  234 (505)
Q Consensus       155 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  234 (505)
                      |.+..++.++.+++|+.|++++|.++.++ .+..+++|+.|++++| .+..++.  ++.+++|+.|++++|.+...    
T Consensus        97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~----  168 (605)
T 1m9s_A           97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI----  168 (605)
T ss_dssp             SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCC----
T ss_pred             CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCc----
Confidence            99999778999999999999999999875 6899999999999994 5566643  89999999999999988542    


Q ss_pred             hccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcc
Q 037920          235 EGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGG  279 (505)
Q Consensus       235 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~  279 (505)
                         .+  +..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus       169 ---~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          169 ---VP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ---GG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred             ---hh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence               23  88999999999999999988754459999999986543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=2.1e-16  Score=154.74  Aligned_cols=227  Identities=15%  Similarity=0.082  Sum_probs=143.5

Q ss_pred             EEecCCCCcc-CCCCC-CCCCccEEEeeecCCCCccccCh----hHHhCCC-CccEEEEeCCcCccC-cccccCC-----
Q 037920           78 IVLHDIRTNL-LPEVV-ESPQLKLLFICADQESSSLTIPN----KFFERMM-QVRVINLTNINLMSL-PSSLGLL-----  144 (505)
Q Consensus        78 l~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~l~~l-----  144 (505)
                      ..++.+.+.. ++... ..++|+.|++   +++.+...+.    ..+..++ +|++|++++|.++.. +..+..+     
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~L---s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDL---SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEEC---TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEc---cCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            4556666643 33333 3445888888   5555666654    5567788 899999999988764 4445543     


Q ss_pred             CCCCeeEeeccCCCC--ccc----ccCC-CCCcEEEccCCCCcccch-h----hhC-CCCCCEEeeeCCCCCCc-----c
Q 037920          145 SNLRTLSLDNCKLLD--ITV----VRDL-KKLEILCLRGSNIKMLPI-E----VSE-LARLRLLGLRDCRELEV-----I  206 (505)
Q Consensus       145 ~~L~~L~L~~~~l~~--~~~----i~~l-~~L~~L~l~~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~~~~-----~  206 (505)
                      ++|++|++++|.+..  +..    +..+ ++|++|++++|.++..+. .    +.. .++|++|++++| .++.     +
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHH
Confidence            889999999998876  332    4445 789999999998876543 2    334 368999999884 4442     2


Q ss_pred             ChhhhcCCC-CccEEEeeCCCCCCchhhhhccccccccCC-CCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecc
Q 037920          207 PANVLSNLS-HLEELYIGYNSFGKWEVEMEGVKNASLHEL-KHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAG  284 (505)
Q Consensus       207 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~  284 (505)
                      +.. +..++ +|++|++++|.+.....   ..+...+... ++|+.|++++|.+....                      
T Consensus       159 ~~~-l~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~~~~----------------------  212 (362)
T 3goz_A          159 IQI-LAAIPANVNSLNLRGNNLASKNC---AELAKFLASIPASVTSLDLSANLLGLKS----------------------  212 (362)
T ss_dssp             HHH-HHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGGGSC----------------------
T ss_pred             HHH-HhcCCccccEeeecCCCCchhhH---HHHHHHHHhCCCCCCEEECCCCCCChhH----------------------
Confidence            232 45555 89999999888754321   1223345555 48999999888865411                      


Q ss_pred             cccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCc--chhhhhhhccCCCCccEEEEeCCC
Q 037920          285 VWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDV--DYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       285 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                                  .......+....++|+.|++++|.....  ..+...+  ..+++|+.|++++|.
T Consensus       213 ------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~--~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          213 ------------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK--DSLKHLQTVYLDYDI  264 (362)
T ss_dssp             ------------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT--TTTTTCSEEEEEHHH
T ss_pred             ------------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH--hcCCCccEEEeccCC
Confidence                        1112223333235788888888732221  2223333  567888888888875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.61  E-value=8e-15  Score=133.65  Aligned_cols=149  Identities=21%  Similarity=0.351  Sum_probs=115.9

Q ss_pred             CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEee
Q 037920           75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLD  153 (505)
Q Consensus        75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~  153 (505)
                      .+.++.+++.+..+|... .++|+.|++   .++.+..++...|..+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI-PTNAQILYL---HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCC-CCCCCEEEc---CCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            456888888888887643 378888888   5555666655556888888888888888888764 45788888888888


Q ss_pred             ccCCCC-c-ccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920          154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      +|.+.. + ..+..+++|++|++++|+++.+|..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            888887 3 446788888888888888888888888888888888888 5666776555777888888888877664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1.5e-14  Score=148.56  Aligned_cols=161  Identities=22%  Similarity=0.373  Sum_probs=119.0

Q ss_pred             CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920           73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL  152 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L  152 (505)
                      .+++.|++++|.+..+|... .++|+.|++   .++.+..+|    ..+++|++|++++|.++.+|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~L---s~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEI---TQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEEC---CSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEEC---cCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence            37899999999988887644 478888888   555566777    347888888888888888877 554  8888888


Q ss_pred             eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920          153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                      ++|.++.++.  .+++|+.|++++|.++.+|.   .+++|++|++++ +.+..+|.  +.  ++|+.|++++|.++.+  
T Consensus       128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~l--  195 (571)
T 3cvr_A          128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLESL--  195 (571)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSSC--
T ss_pred             CCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCch--
Confidence            8888888333  67888888888888888875   567888888888 45566776  44  7888888888877533  


Q ss_pred             hhhccccccccCCCCc-------CEEEeecccCCCCCCCC
Q 037920          233 EMEGVKNASLHELKHL-------TSLELHIKDVNTLPRGL  265 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~l~~~~  265 (505)
                            |. +..  +|       +.|++++|.+..+|..+
T Consensus       196 ------p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l  226 (571)
T 3cvr_A          196 ------PA-VPV--RNHHSEETEIFFRCRENRITHIPENI  226 (571)
T ss_dssp             ------CC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred             ------hh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence                  22 322  44       88888888887777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=5.9e-15  Score=137.47  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=133.3

Q ss_pred             CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920           67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN  146 (505)
Q Consensus        67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~  146 (505)
                      .....++++++|++++|.+..++....+++|+.|++   .++.+..++.  +..+++|++|++++|.++.+|....  ++
T Consensus        35 ~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L---~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~  107 (263)
T 1xeu_A           35 VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL---SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--AC  107 (263)
T ss_dssp             ECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred             cchhhcCcCcEEECcCCCcccchHHhhCCCCCEEEC---CCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence            445678999999999999999997779999999999   6667777776  6899999999999999999876433  99


Q ss_pred             CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCC
Q 037920          147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS  226 (505)
Q Consensus       147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  226 (505)
                      |++|++++|.+.+++.++.+++|+.|++++|+++.++ .+..+++|+.|++++ +.+..++.  +..+++|+.|++++|.
T Consensus       108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~--l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTGG--LTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCTT--STTCCCCCEEEEEEEE
T ss_pred             ccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchHH--hccCCCCCEEeCCCCc
Confidence            9999999999999778999999999999999999986 789999999999999 55566633  8999999999999987


Q ss_pred             CCC
Q 037920          227 FGK  229 (505)
Q Consensus       227 ~~~  229 (505)
                      +..
T Consensus       184 ~~~  186 (263)
T 1xeu_A          184 CVN  186 (263)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1.3e-14  Score=148.98  Aligned_cols=182  Identities=18%  Similarity=0.224  Sum_probs=136.7

Q ss_pred             CCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEE
Q 037920           95 PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILC  173 (505)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~  173 (505)
                      .+++.|++   .++.+..+|..+   +++|++|++++|.++.+|   ..+++|++|++++|.++. |. ++.  +|++|+
T Consensus        59 ~~L~~L~L---s~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQL---NRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEEC---CSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred             CCccEEEe---CCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence            37889999   555566687755   378999999999999888   457899999999999888 45 555  899999


Q ss_pred             ccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEe
Q 037920          174 LRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL  253 (505)
Q Consensus       174 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  253 (505)
                      +++|+++.+|.   .+++|+.|++++ +.+..+|.    .+++|++|++++|.+..        +|. +.  ++|+.|++
T Consensus       127 Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~--------lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          127 VDNNQLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTF--------LPE-LP--ESLEALDV  187 (571)
T ss_dssp             CCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC--------CCC-CC--TTCCEEEC
T ss_pred             CCCCcCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCC--------cch-hh--CCCCEEEC
Confidence            99999988886   678999999988 55666665    56889999999988743        444 44  88999999


Q ss_pred             ecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhc
Q 037920          254 HIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAK  333 (505)
Q Consensus       254 ~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  333 (505)
                      ++|.+..+|. + ..+|                                  ....+.|+.|++++|   .++.+|..+  
T Consensus       188 s~N~L~~lp~-~-~~~L----------------------------------~~~~~~L~~L~Ls~N---~l~~lp~~l--  226 (571)
T 3cvr_A          188 STNLLESLPA-V-PVRN----------------------------------HHSEETEIFFRCREN---RITHIPENI--  226 (571)
T ss_dssp             CSSCCSSCCC-C-C------------------------------------------CCEEEECCSS---CCCCCCGGG--
T ss_pred             cCCCCCchhh-H-HHhh----------------------------------hcccccceEEecCCC---cceecCHHH--
Confidence            9998887776 2 1111                                  111355688888887   556778777  


Q ss_pred             cCCCCccEEEEeCCC
Q 037920          334 VGPSQLKHLHIWNHP  348 (505)
Q Consensus       334 ~~l~~L~~L~l~~~~  348 (505)
                      ..+++|+.|++++|.
T Consensus       227 ~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          227 LSLDPTCTIILEDNP  241 (571)
T ss_dssp             GGSCTTEEEECCSSS
T ss_pred             hcCCCCCEEEeeCCc
Confidence            448888888888886

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=9.2e-15  Score=132.31  Aligned_cols=147  Identities=22%  Similarity=0.346  Sum_probs=100.9

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~  154 (505)
                      +.++.+++.+..+|.... ++++.|++   .++.+..++...|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l---~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRL---EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEEC---CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEEC---CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            567777777777775432 67777777   55556666665567777777888777777764 56677777777777777


Q ss_pred             cCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          155 CKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      |.+.. + ..+..+++|++|++++|+++.+ |..+..+++|++|++++ +.+..++...+..+++|+.|++++|.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            77777 3 3456677777777777777766 34566777777777777 445555554466677777777776655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=4e-15  Score=133.57  Aligned_cols=160  Identities=23%  Similarity=0.271  Sum_probs=135.8

Q ss_pred             cccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCC
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSN  146 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~  146 (505)
                      ...+++++|++++|.+..++..  ..+++|++|++   .++.+..++...|..+++|++|++++|.++.+|.. +..+++
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  101 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYL---GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ  101 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCCcEEEcCCCccCcCChhhhcccccCcEEEC---CCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence            3467899999999999888763  38999999999   66677788888789999999999999999997764 689999


Q ss_pred             CCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920          147 LRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG  223 (505)
Q Consensus       147 L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  223 (505)
                      |++|++++|.+.. + ..+..+++|++|++++|+++.++.. +..+++|++|++++|..        .+.+++|+.|++.
T Consensus       102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~  173 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEW  173 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHH
T ss_pred             CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHH
Confidence            9999999999988 4 4578999999999999999988764 78899999999999632        3567788999888


Q ss_pred             CCCCCCchhhhhccccccccCCCC
Q 037920          224 YNSFGKWEVEMEGVKNASLHELKH  247 (505)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~l~~l~~  247 (505)
                      .|.+       .|.+|..++.++.
T Consensus       174 ~n~~-------~g~ip~~~~~l~~  190 (208)
T 2o6s_A          174 INKH-------SGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHC-------TTTBBCTTSSBCT
T ss_pred             HHhC-------CceeeccCccccC
Confidence            8877       6778887777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=130.66  Aligned_cols=148  Identities=21%  Similarity=0.339  Sum_probs=95.4

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCcccc-ChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEee
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTI-PNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~  153 (505)
                      ++++++++.++.+|... ...++.|++   .++.+..+ +..+|..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L---~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRL---NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEEC---CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEc---CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            47777877777776532 345667777   44444444 34445677777777777777776544 56777777777777


Q ss_pred             ccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920          154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      +|.+.. + ..++.+++|++|++++|+++.+ |..+..+++|++|++++ +.+..++...+..+++|+.|++++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            777766 2 4466777777777777777666 45566677777777766 4444443333666667777777666553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=1.4e-14  Score=141.68  Aligned_cols=171  Identities=20%  Similarity=0.284  Sum_probs=122.3

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHh-CCCCccEEEEeCCcCccCc-ccccCCCCCCeeEee
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFE-RMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~  153 (505)
                      +.++++++.+..+|... ...++.|++   .++.+..++...|. .+++|++|++++|.++.++ ..+..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~L---s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDL---SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEEC---CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEEC---CCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            57888888887777543 345788888   55666667666666 7888888888888888765 457888888888888


Q ss_pred             ccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhh---cCCCCccEEEeeCCCC
Q 037920          154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVL---SNLSHLEELYIGYNSF  227 (505)
Q Consensus       154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~  227 (505)
                      +|.+.. + ..+..+++|++|++++|+++.+ |..+..+++|++|++++ +.+..+|...+   ..+++|+.|++++|.+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            888777 3 4577888888888888888776 45677888888888887 56667776644   5678888888888877


Q ss_pred             CCchhhhhccccccccCCCC--cCEEEeecccC
Q 037920          228 GKWEVEMEGVKNASLHELKH--LTSLELHIKDV  258 (505)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~  258 (505)
                      ..++.       ..+..++.  ++.|++++|.+
T Consensus       176 ~~l~~-------~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          176 KKLPL-------TDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCCCH-------HHHHHSCHHHHTTEECCSSCE
T ss_pred             CccCH-------HHhhhccHhhcceEEecCCCc
Confidence            54432       34455555  36677776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=3.5e-14  Score=128.50  Aligned_cols=141  Identities=20%  Similarity=0.338  Sum_probs=73.5

Q ss_pred             CCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCccc
Q 037920          106 QESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKML  182 (505)
Q Consensus       106 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l  182 (505)
                      .+..+..+|..+   .++|+.|++++|.++.++. .+..+++|++|++++|.+..  +..+..+++|++|++++|+++.+
T Consensus        19 ~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           19 RGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             TTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            334444455432   2455666666666555443 45555666666666655555  34555556666666666655555


Q ss_pred             chh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeeccc
Q 037920          183 PIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKD  257 (505)
Q Consensus       183 p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  257 (505)
                      |.. +..+++|++|++++ +.+..++...+..+++|++|++++|.+...       .+..+..+++|+.|++++|.
T Consensus        96 ~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTI-------AKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------CTTTTTTCTTCCEEECCSSC
T ss_pred             CHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEE-------CHHHHhCCCCCCEEEeCCCC
Confidence            433 34555566665555 334444333355555555555555555322       22334555555555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=3.6e-14  Score=128.42  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=98.3

Q ss_pred             cEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc--cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEE
Q 037920           98 KLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS--SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILC  173 (505)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~  173 (505)
                      +++++   .++.+..+|..+   ...+++|++++|.++.++.  .+..+++|++|++++|.+.. + ..++.+++|++|+
T Consensus        14 ~~l~~---s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDC---SNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TEEEC---CSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEeEe---CCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            46666   555556666543   3456777777777777532  36777777777777777777 3 4677777777777


Q ss_pred             ccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          174 LRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       174 l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      +++|.++.++. .+..+++|++|++++ +.+..++...+..+++|++|++++|.+.       +..|..+..+++|+.|+
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQIT-------TVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCC-------CBCTTTTTTCTTCCEEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCC-------EECHHHhcCCCCCCEEE
Confidence            77777776654 367777777777777 4445554333677777777777777763       33345667777777777


Q ss_pred             eecccC
Q 037920          253 LHIKDV  258 (505)
Q Consensus       253 l~~~~~  258 (505)
                      +++|.+
T Consensus       160 L~~N~l  165 (220)
T 2v70_A          160 LLANPF  165 (220)
T ss_dssp             CCSCCE
T ss_pred             ecCcCC
Confidence            776664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=3e-14  Score=123.19  Aligned_cols=140  Identities=24%  Similarity=0.220  Sum_probs=99.8

Q ss_pred             CCCCccEEEEeCCcCc--cCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcc-cchhhhCCCCCCEEe
Q 037920          120 RMMQVRVINLTNINLM--SLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKM-LPIEVSELARLRLLG  196 (505)
Q Consensus       120 ~l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~  196 (505)
                      ..++|+.|++++|.++  .+|..+..+++|++|++++|.+..+..++.+++|++|++++|+++. +|..+.++++|++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3567888888888877  6777777788888888888877777777778888888888887776 566666688888888


Q ss_pred             eeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920          197 LRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG  264 (505)
Q Consensus       197 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  264 (505)
                      +++| .+..++. ..+..+++|++|++++|.+...+.    .....+..+++|+.|+++.|...++|.+
T Consensus       102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence            8874 5555542 226778888888888877633210    0013577788888888888887776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=6.4e-14  Score=127.62  Aligned_cols=148  Identities=21%  Similarity=0.291  Sum_probs=105.0

Q ss_pred             ccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEE
Q 037920           97 LKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILC  173 (505)
Q Consensus        97 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~  173 (505)
                      .+.++.   .+.....+|..+   .++|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus        21 ~~~v~c---~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           21 GTTVDC---RSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             TTEEEC---TTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEeEc---cCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            345555   555566676643   37788888888888775 5567778888888888888777 3 4567788888888


Q ss_pred             ccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          174 LRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       174 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      +++|+++.+|.. +..+++|++|++++ +.+..+|.. +..+++|++|++++|.+..+       .+..+..+++|+.|+
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI-------PHGAFDRLSSLTHAY  165 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEE
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc-------CHHHHhCCCCCCEEE
Confidence            888888777544 56778888888877 556677766 67778888888887777432       224567777788888


Q ss_pred             eecccCC
Q 037920          253 LHIKDVN  259 (505)
Q Consensus       253 l~~~~~~  259 (505)
                      +.+|.+.
T Consensus       166 l~~N~~~  172 (229)
T 3e6j_A          166 LFGNPWD  172 (229)
T ss_dssp             CTTSCBC
T ss_pred             eeCCCcc
Confidence            8777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=3.6e-14  Score=138.76  Aligned_cols=163  Identities=21%  Similarity=0.275  Sum_probs=137.0

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCCCC---CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVV---ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP  138 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  138 (505)
                      +++.++. ...+.++.|++++|.+..++...   .+++|+.|++   .++.+..++...|..+++|++|++++|.++.++
T Consensus        29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L---~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  104 (361)
T 2xot_A           29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL---SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD  104 (361)
T ss_dssp             CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEEC---CCCcCCccChhhccCCCCCCEEECCCCcCCcCC
Confidence            3455543 45677999999999998876543   7899999999   677777888777899999999999999999876


Q ss_pred             c-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchhh----hCCCCCCEEeeeCCCCCCccChhhh
Q 037920          139 S-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIEV----SELARLRLLGLRDCRELEVIPANVL  211 (505)
Q Consensus       139 ~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~~~~~~~~~~  211 (505)
                      . .+..+++|++|+|++|.+..  +..+..+++|+.|++++|+++.+|..+    ..+++|+.|++++ +.+..++...+
T Consensus       105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~  183 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDL  183 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHH
T ss_pred             HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHh
Confidence            5 68899999999999999988  578999999999999999999998765    5799999999999 67788887667


Q ss_pred             cCCCC--ccEEEeeCCCCCC
Q 037920          212 SNLSH--LEELYIGYNSFGK  229 (505)
Q Consensus       212 ~~l~~--L~~L~l~~~~~~~  229 (505)
                      ..++.  ++.|++.+|.+.-
T Consensus       184 ~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          184 QKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHSCHHHHTTEECCSSCEEC
T ss_pred             hhccHhhcceEEecCCCccC
Confidence            88887  4889999987753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=1.4e-16  Score=164.32  Aligned_cols=190  Identities=18%  Similarity=0.191  Sum_probs=141.3

Q ss_pred             cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCC-------------ccccChhHHhCCCCccEEE-EeCCcCcc
Q 037920           72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESS-------------SLTIPNKFFERMMQVRVIN-LTNINLMS  136 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~  136 (505)
                      .+++++|++++|.++.+|... .+++|+.|++   +++.             ....++..+..+++|+.|+ ++.+.+..
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l---~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhcc---ccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            456667777777777776544 7777777776   3331             1222333456677777777 45544333


Q ss_pred             Ccc------cccC--CCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccCh
Q 037920          137 LPS------SLGL--LSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA  208 (505)
Q Consensus       137 l~~------~l~~--l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~  208 (505)
                      ++.      .+..  ...|++|++++|.+++++.++.+++|+.|++++|+++.+|..++++++|+.|++++ +.+..+| 
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-  502 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-
Confidence            221      1111  13589999999999994449999999999999999999999999999999999999 5666788 


Q ss_pred             hhhcCCCCccEEEeeCCCCCCchhhhhccc-cccccCCCCcCEEEeecccCCCCCCCCC-----CCCCcEEE
Q 037920          209 NVLSNLSHLEELYIGYNSFGKWEVEMEGVK-NASLHELKHLTSLELHIKDVNTLPRGLF-----FPKLQRYK  274 (505)
Q Consensus       209 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~~~~-----~~~L~~L~  274 (505)
                      . ++.+++|++|++++|.+.       +.. |..+..+++|+.|++++|.+..+|....     +++|+.|+
T Consensus       503 ~-l~~l~~L~~L~Ls~N~l~-------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          503 G-VANLPRLQELLLCNNRLQ-------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             G-GTTCSSCCEEECCSSCCC-------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             c-cCCCCCCcEEECCCCCCC-------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            4 899999999999999884       333 6789999999999999999988776553     67887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=2.1e-13  Score=117.84  Aligned_cols=107  Identities=24%  Similarity=0.373  Sum_probs=53.3

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccc--hhhhCCCCCCE
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLP--IEVSELARLRL  194 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~  194 (505)
                      ..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|  ..+..+++|++
T Consensus        46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred             HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence            4445555555555555544 444555555555555555544 2 33333555555555555555543  34555555555


Q ss_pred             EeeeCCCCCCccCh---hhhcCCCCccEEEeeCCCC
Q 037920          195 LGLRDCRELEVIPA---NVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       195 L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~  227 (505)
                      |++++| .+..++.   ..+..+++|++|++++|..
T Consensus       125 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          125 LDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            555552 3333333   2245555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=1.4e-13  Score=116.45  Aligned_cols=128  Identities=21%  Similarity=0.187  Sum_probs=86.4

Q ss_pred             CCCccEEEEeCCcCc--cCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcc-cchhhhCCCCCCEEee
Q 037920          121 MMQVRVINLTNINLM--SLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKM-LPIEVSELARLRLLGL  197 (505)
Q Consensus       121 l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l  197 (505)
                      .++|+.|++++|.++  .+|..+..+++|++|++++|.+.....++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            466777777777777  5777777777777777777777766667777778888887777776 5666666777888877


Q ss_pred             eCCCCCCccC--hhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920          198 RDCRELEVIP--ANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH  254 (505)
Q Consensus       198 ~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  254 (505)
                      ++| .+..++  .. ++.+++|++|++++|.+...+.    .....+..+++|+.|+++
T Consensus        96 s~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNLND----YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGSTT----HHHHHHHHCTTCCEETTB
T ss_pred             CCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccchHH----HHHHHHHHCCCcccccCC
Confidence            773 445543  33 6777777777777776632210    001346667777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=3.5e-14  Score=151.08  Aligned_cols=157  Identities=19%  Similarity=0.241  Sum_probs=102.7

Q ss_pred             cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeec--CCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCC
Q 037920           72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICAD--QESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLR  148 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~  148 (505)
                      .+.++++.+.++.+...+... ...+|+.+.+.+.  .++... ++...|..+.+|+.|++++|.+..+|..+..+++|+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT  250 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence            356888999888886655432 5555555554110  112222 455557899999999999999999999999999999


Q ss_pred             eeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          149 TLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       149 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      +|+|++|.+.. |..++.+++|++|+|++|+++.+|..++.+++|++|++++ +.++.+|.. ++.+++|+.|++++|.+
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCcc
Confidence            99999999998 7889999999999999999999999999999999999999 567889988 89999999999999998


Q ss_pred             CCch
Q 037920          228 GKWE  231 (505)
Q Consensus       228 ~~~~  231 (505)
                      ....
T Consensus       329 ~~~~  332 (727)
T 4b8c_D          329 EKQF  332 (727)
T ss_dssp             CSHH
T ss_pred             CCCC
Confidence            6543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=8.1e-13  Score=116.76  Aligned_cols=125  Identities=22%  Similarity=0.306  Sum_probs=80.0

Q ss_pred             cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cc--cccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCC
Q 037920          125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-IT--VVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDC  200 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~  200 (505)
                      ++++++++.++.+|..+..  +|++|++++|.+.. +.  .++.+++|++|++++|+++.+ |..+..+++|++|++++ 
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-
Confidence            5666666666666655433  66777777776666 32  266677777777777776665 45666677777777776 


Q ss_pred             CCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920          201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN  259 (505)
Q Consensus       201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (505)
                      +.+..++...+..+++|++|++++|.+       .+..|..+..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCC-------CEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            445555544456677777777777766       3444556667777777777766653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=3.5e-13  Score=113.85  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=87.2

Q ss_pred             cCCCcEEEecCCCCc--cCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCCC
Q 037920           72 IKLYTSIVLHDIRTN--LLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSNL  147 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L  147 (505)
                      .++++++++++|.+.  .++... .+++|+.|++   .++.+..+  ..+..+++|++|++++|.++. +|..+..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l---~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST---INVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEEC---TTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEEC---cCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            467888888888886  666653 7778888888   44445555  235677788888888887777 66666667777


Q ss_pred             CeeEeeccCCCC-c--ccccCCCCCcEEEccCCCCcccch----hhhCCCCCCEEeee
Q 037920          148 RTLSLDNCKLLD-I--TVVRDLKKLEILCLRGSNIKMLPI----EVSELARLRLLGLR  198 (505)
Q Consensus       148 ~~L~L~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~  198 (505)
                      ++|++++|.+.+ +  ..++.+++|++|++++|.++.+|.    .+..+++|+.|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777777777776 3  667777777777777777776654    56777777777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=3.7e-13  Score=117.19  Aligned_cols=124  Identities=15%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             ccCCCcEEEecCCCCccCCCCCCCC-CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc-cCCCCCC
Q 037920           71 AIKLYTSIVLHDIRTNLLPEVVESP-QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLR  148 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~  148 (505)
                      .+.++++|++++|.+..++....+. +|+.|++   .++.+..++  .+..+++|++|++++|.++.+|+.+ ..+++|+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~L---s~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDF---SDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEEC---CSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEEC---CCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3555666666666665555444333 5555555   333333332  1355555555555555555554333 5555555


Q ss_pred             eeEeeccCCCC-cc--cccCCCCCcEEEccCCCCcccchh----hhCCCCCCEEeeeC
Q 037920          149 TLSLDNCKLLD-IT--VVRDLKKLEILCLRGSNIKMLPIE----VSELARLRLLGLRD  199 (505)
Q Consensus       149 ~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~  199 (505)
                      +|++++|.+.. +.  .++.+++|+.|++++|.++.+|..    +..+++|+.|++++
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence            55555555544 22  455555555555555555555442    45555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=4.4e-13  Score=116.75  Aligned_cols=133  Identities=15%  Similarity=0.196  Sum_probs=66.4

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCCC-CCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhh-hCCCCCCEEe
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLLS-NLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLG  196 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~-~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~  196 (505)
                      ..+.+|+.|++++|.++.+|. +..+. +|++|++++|.+.++..++.+++|++|++++|.++.+|..+ ..+++|++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            345555555555555555533 22322 55555555555555445555555556666555555554333 5555566665


Q ss_pred             eeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeeccc
Q 037920          197 LRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKD  257 (505)
Q Consensus       197 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  257 (505)
                      +++ +.++.+|. ..++.+++|+.|++++|.+...+.    .....+..+++|+.|+++.+.
T Consensus        95 L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~----~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           95 LTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKKH----YRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT----HHHHHHHHCTTCSEETTEECC
T ss_pred             CCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh----HHHHHHHHCCccceeCCCcCC
Confidence            555 33344443 114555556666655555422110    000124555556666555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=3.1e-12  Score=112.97  Aligned_cols=104  Identities=25%  Similarity=0.417  Sum_probs=51.3

Q ss_pred             CccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeC
Q 037920          123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRD  199 (505)
Q Consensus       123 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~  199 (505)
                      +|+.|++++|.++.+|..+..+++|++|++++|.+..  +..+..+++|++|++++|+++.++. .+..+++|++|++++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            4445555555555444445555555555555555444  2334555555555555555554432 344555555555555


Q ss_pred             CCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          200 CRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       200 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                       +.+..++...+..+++|+.|++++|.+
T Consensus       112 -N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          112 -NDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             -SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             -CCCCeeChhhhhcCccccEEEeCCCCe
Confidence             334444443344555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=4.3e-12  Score=112.10  Aligned_cols=124  Identities=22%  Similarity=0.309  Sum_probs=94.8

Q ss_pred             cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCC
Q 037920          125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRE  202 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~  202 (505)
                      ++++++++.++.+|..+.  ++|++|++++|.+.. +..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence            578888888888887653  678888888888887 678888888888888888888775 4578888888888888 55


Q ss_pred             CCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccC
Q 037920          203 LEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV  258 (505)
Q Consensus       203 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (505)
                      +..++...+..+++|++|++++|.+...       .+..+..+++|+.|++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVV-------PEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCee-------ChhhhhcCccccEEEeCCCCe
Confidence            6666655577888888888888877432       224567778888888877764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=2.8e-12  Score=113.25  Aligned_cols=121  Identities=19%  Similarity=0.275  Sum_probs=71.6

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccCh-hHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEee
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPN-KFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~  153 (505)
                      +.++++++.++.+|... ..++++|++   .++.+..++. .+|..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l---~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLL---NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEEC---CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEEC---CCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            56777777776666533 226666666   4444444443 2346666666666666666664 4556666666666666


Q ss_pred             ccCCCC--cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCC
Q 037920          154 NCKLLD--ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDC  200 (505)
Q Consensus       154 ~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~  200 (505)
                      +|.+..  +..+..+++|++|++++|+++.+ |..+..+++|++|++++|
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            666665  23455666666666666666544 444555666666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=1.5e-11  Score=107.11  Aligned_cols=121  Identities=22%  Similarity=0.314  Sum_probs=64.9

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~  154 (505)
                      +.++++++.+..+|.. ..++|+.|++   .++.+..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG-IPSSATRLEL---ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCCTT-CCTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCccCCCC-CCCCCcEEEe---CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4566666666655532 2355666666   33444455554455566666666666666554432 35555555555555


Q ss_pred             cCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCC
Q 037920          155 CKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDC  200 (505)
Q Consensus       155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~  200 (505)
                      |.+.. + ..++.+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            55555 2 2345555555555555555555433 244555555555553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=4.1e-13  Score=142.82  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=100.1

Q ss_pred             CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcE
Q 037920           93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEI  171 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~  171 (505)
                      .++.|+.|++   .++.+..++..++ .+++|++|+|++|.++.+|..++.+++|++|+|++|.+.. |..++.+++|++
T Consensus       222 ~l~~L~~L~L---s~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          222 DDQLWHALDL---SNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             CCCCCCEEEC---TTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             cCCCCcEEEC---CCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            8899999999   6666778888875 7999999999999999999999999999999999999998 788999999999


Q ss_pred             EEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccCh
Q 037920          172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA  208 (505)
Q Consensus       172 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~  208 (505)
                      |++++|.++.+|..++++++|++|++++|...+.+|.
T Consensus       298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            9999999999998999999999999999654444444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=2.6e-11  Score=105.49  Aligned_cols=105  Identities=27%  Similarity=0.465  Sum_probs=45.5

Q ss_pred             CCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEee
Q 037920          122 MQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGL  197 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  197 (505)
                      ++|+.|++++|.++.++. .+..+++|++|++++|.+.. + ..++.+++|++|++++|+++.+|.. +..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            344455555544444332 23444444444444444444 2 2234444444444444444444322 344444444444


Q ss_pred             eCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          198 RDCRELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      ++ +.+..++...+..+++|++|++++|.+
T Consensus       108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence            44 233334333233444444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=9.4e-12  Score=128.34  Aligned_cols=124  Identities=24%  Similarity=0.242  Sum_probs=103.8

Q ss_pred             CCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCC
Q 037920          122 MQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDC  200 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  200 (505)
                      ..|++|++++|.++.+|. ++.+++|++|++++|.+.. |..++.+++|+.|++++|+++.+| .++++++|+.|++++ 
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-  517 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-  517 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-
T ss_pred             cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-
Confidence            358999999999999987 9999999999999999999 789999999999999999999998 899999999999999 


Q ss_pred             CCCCcc--ChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEe
Q 037920          201 RELEVI--PANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL  253 (505)
Q Consensus       201 ~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  253 (505)
                      +.+..+  |.. ++.+++|+.|++++|.+...+.    .....+..+++|+.|++
T Consensus       518 N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence            556666  665 8999999999999998754321    11223345788888864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.25  E-value=2.4e-13  Score=120.89  Aligned_cols=139  Identities=21%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             ccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhC
Q 037920          110 SLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSE  188 (505)
Q Consensus       110 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~  188 (505)
                      +..+|.. +..+++|++|++++|.++.+| .+..+++|++|++++|.+.. +..++.+++|++|++++|+++.+| .+..
T Consensus        37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            3344443 467777777777777777776 67777777777777777777 555666677777888777777766 5777


Q ss_pred             CCCCCEEeeeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhh---hccccccccCCCCcCEEE
Q 037920          189 LARLRLLGLRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEM---EGVKNASLHELKHLTSLE  252 (505)
Q Consensus       189 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~  252 (505)
                      +++|++|++++ +.+..++. ..+..+++|++|++++|.+.......   .......+..+++|+.|+
T Consensus       114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            77788887777 34444443 22677777888888777653221100   000112356777777776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=5.2e-11  Score=114.69  Aligned_cols=189  Identities=14%  Similarity=0.143  Sum_probs=137.7

Q ss_pred             cCCCcEEEecCCCCc--------------------cCCCCC--C--------CCCccEEEeeecCCCCccccChhHHhCC
Q 037920           72 IKLYTSIVLHDIRTN--------------------LLPEVV--E--------SPQLKLLFICADQESSSLTIPNKFFERM  121 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~l  121 (505)
                      +++++.|++++|.+.                    .++...  .        +++|+.|.+   .. .+..+++..|.++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L---~~-~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL---SE-KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CB---CT-TCCEECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEEC---Cc-cccchhHHHhhcC
Confidence            677888888888876                    334332  5        889999988   44 6777888888999


Q ss_pred             CCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccC-------CCC----------------------------------
Q 037920          122 MQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCK-------LLD----------------------------------  159 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~-------l~~----------------------------------  159 (505)
                      ++|+.++++++.+..++ ..|..+.++.++......       +..                                  
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            99999999988876644 345555555555443310       000                                  


Q ss_pred             --------------cccc-cCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCcc-EEEe
Q 037920          160 --------------ITVV-RDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLE-ELYI  222 (505)
Q Consensus       160 --------------~~~i-~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l  222 (505)
                                    ...+ ..+++|+.+++.+|+++.+|. .+..+++|+.+++.++  +..++...+..+++|+ .+.+
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL  281 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence                          0000 027899999999988998864 5888999999999874  7888888789999999 9999


Q ss_pred             eCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEE
Q 037920          223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYK  274 (505)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~  274 (505)
                      .. .+...       .+.+|..+++|+.+++..+.+..++...+  +++|+.+.
T Consensus       282 ~~-~l~~I-------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          282 PA-SVTAI-------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CT-TCCEE-------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cc-cceEE-------chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            86 55332       34678999999999999999988887664  77777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.15  E-value=8.7e-13  Score=117.22  Aligned_cols=143  Identities=15%  Similarity=0.187  Sum_probs=109.9

Q ss_pred             CCcEEEecCC--CCccCCCC-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920           74 LYTSIVLHDI--RTNLLPEV-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        74 ~l~~l~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  150 (505)
                      +++...+.+.  .++.++.. ..+++|++|++   .++.+..+| . +..+++|++|++++|.++.+|..+..+++|++|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~l---s~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLAL---STNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEEC---SEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEEC---CCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence            3555555543  33444433 38889999999   555566677 3 588999999999999999998888888999999


Q ss_pred             EeeccCCCCcccccCCCCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccC---------hhhhcCCCCccE
Q 037920          151 SLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIP---------ANVLSNLSHLEE  219 (505)
Q Consensus       151 ~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~---------~~~~~~l~~L~~  219 (505)
                      ++++|.+..++.++.+++|++|++++|.++.++.  .+..+++|++|++++|......|         ...+..+++|+.
T Consensus        99 ~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A           99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             ECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            9999999885578889999999999999988764  68899999999999854322222         223678899999


Q ss_pred             EE
Q 037920          220 LY  221 (505)
Q Consensus       220 L~  221 (505)
                      |+
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.15  E-value=1.6e-10  Score=100.03  Aligned_cols=100  Identities=27%  Similarity=0.480  Sum_probs=58.0

Q ss_pred             cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCC
Q 037920          125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCR  201 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~  201 (505)
                      +.++++++.++.+|..+.  ++|++|++++|.+..  +..++.+++|++|++++|+++.+|.. +.++++|++|++++ +
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence            456666666666665443  566666666666655  34556666666666666666666543 35566666666665 3


Q ss_pred             CCCccChhhhcCCCCccEEEeeCCCC
Q 037920          202 ELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       202 ~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      .+..++...+..+++|++|++++|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            44455544345555566666555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=1.8e-10  Score=99.41  Aligned_cols=102  Identities=24%  Similarity=0.401  Sum_probs=65.9

Q ss_pred             ccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCC
Q 037920          124 VRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDC  200 (505)
Q Consensus       124 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~  200 (505)
                      .+.++++++.++.+|..+  .++|++|++++|.+..  +..++.+++|++|++++|+++.+|.. +..+++|++|++++ 
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence            456777777777776654  3667777777777666  35566677777777777777666543 45667777777766 


Q ss_pred             CCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920          201 RELEVIPANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      +.+..++...+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4555555544566666666666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=2.6e-10  Score=98.75  Aligned_cols=103  Identities=17%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~  154 (505)
                      +.++++++.+..+|.... ++|+.|++   .++.+..+++..|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWL---NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEe---CCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            456666666666654322 55666666   44444444444445566666666666665555543 34555555555555


Q ss_pred             cCCCC-cc-cccCCCCCcEEEccCCCCccc
Q 037920          155 CKLLD-IT-VVRDLKKLEILCLRGSNIKML  182 (505)
Q Consensus       155 ~~l~~-~~-~i~~l~~L~~L~l~~~~l~~l  182 (505)
                      |.+.. +. .+..+++|++|++++|.+...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            55555 32 255555555555555555433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=7.3e-10  Score=95.51  Aligned_cols=102  Identities=21%  Similarity=0.320  Sum_probs=59.6

Q ss_pred             CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEee
Q 037920           75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLD  153 (505)
Q Consensus        75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~  153 (505)
                      .+.++++++.+..+|... .++|+.|++   .++.+..++...|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L---~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEc---CCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            356777777776666433 256666666   44445555444456666666666666666665543 3556666666666


Q ss_pred             ccCCCC-c-ccccCCCCCcEEEccCCCCc
Q 037920          154 NCKLLD-I-TVVRDLKKLEILCLRGSNIK  180 (505)
Q Consensus       154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~  180 (505)
                      +|.+.. + ..+..+++|++|++++|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            666555 3 33555666666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.00  E-value=8.7e-09  Score=101.49  Aligned_cols=233  Identities=16%  Similarity=0.188  Sum_probs=114.2

Q ss_pred             CCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCee
Q 037920           73 KLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTL  150 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L  150 (505)
                      ..++.+.+.+ .+..++... .-.+|+.+.+   ..+ +..++...|.++ +|+.+.+.. .++.++ ..|.++++|+.+
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l---~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVL---NEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEEC---CTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEe---CCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            4455555543 233333322 1235666666   222 445555555553 466666654 444433 345666666666


Q ss_pred             EeeccCCCC-cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920          151 SLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG  228 (505)
Q Consensus       151 ~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  228 (505)
                      ++..|.+.. +.......+|+.+.+.. +++.++ ..+.++++|+.+.+..  .+..++...+.. .+|+.+.+. +.+.
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             ecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeC-CCcc
Confidence            666665555 33222345666666653 355443 3455566666666654  244455443444 556666664 2232


Q ss_pred             CchhhhhccccccccCCCCcCEEEeecccCC-----CCCCCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920          229 KWEVEMEGVKNASLHELKHLTSLELHIKDVN-----TLPRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK  301 (505)
Q Consensus       229 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~l~~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~  301 (505)
                      ..       ....|..+++|+.+.+..+...     .++...+  +++|+.+.+.                  .......
T Consensus       261 ~I-------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~------------------~~i~~I~  315 (401)
T 4fdw_A          261 NI-------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP------------------ESIRILG  315 (401)
T ss_dssp             EE-------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC------------------TTCCEEC
T ss_pred             EE-------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC------------------CceEEEh
Confidence            21       1244566666666666554433     2333332  5555555542                  0011111


Q ss_pred             hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                      ......+++|+.+.+..+    +..+....+ .++ +|+.+.+.++.
T Consensus       316 ~~aF~~c~~L~~l~lp~~----l~~I~~~aF-~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN----VTQINFSAF-NNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT----CCEECTTSS-SSS-CCCEEEECCSS
T ss_pred             hhhhcCCCCccEEEECcc----ccEEcHHhC-CCC-CCCEEEEcCCC
Confidence            111222566777777543    334433332 455 77777777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.93  E-value=1.8e-10  Score=112.41  Aligned_cols=133  Identities=21%  Similarity=0.204  Sum_probs=78.5

Q ss_pred             CCccEEEEeCCcCcc--CcccccCCCCCCeeEeeccCCCC--cccc-----cCCCCCcEEEccCCCCcc-----cchhhh
Q 037920          122 MQVRVINLTNINLMS--LPSSLGLLSNLRTLSLDNCKLLD--ITVV-----RDLKKLEILCLRGSNIKM-----LPIEVS  187 (505)
Q Consensus       122 ~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~L~~~~l~~--~~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~  187 (505)
                      ++|+.|++++|.++.  +..-...+++|++|+|++|.+.+  ...+     ...++|++|++++|.++.     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            567777777766653  11112234566777777776665  2232     245677777777776653     344556


Q ss_pred             CCCCCCEEeeeCCCCCCcc-----ChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920          188 ELARLRLLGLRDCRELEVI-----PANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN  259 (505)
Q Consensus       188 ~l~~L~~L~l~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (505)
                      ..++|++|++++|. ++..     +.. +...++|++|++++|.+.+...   ..+...+...++|+.|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~---~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAA---LALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHH---HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHH---HHHHHHHHhCCCCCEEeccCCCCC
Confidence            67777777777743 3332     222 4556677777777777654321   234445556677777777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=9.9e-09  Score=98.61  Aligned_cols=168  Identities=13%  Similarity=0.121  Sum_probs=128.7

Q ss_pred             cCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcC----cc---------
Q 037920           72 IKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINL----MS---------  136 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~---------  136 (505)
                      +.+++.+.+.+ .+..++...  .|++|+.+.+   ..+.+..++...|..+.++..+.......    ..         
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l---~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI---RKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB---CCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEc---CCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence            78999999998 888887643  8999999999   66666677777777777777665544110    00         


Q ss_pred             --------------Cccc---------------------------c-cCCCCCCeeEeeccCCCC-c-ccccCCCCCcEE
Q 037920          137 --------------LPSS---------------------------L-GLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEIL  172 (505)
Q Consensus       137 --------------l~~~---------------------------l-~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L  172 (505)
                                    ++..                           + ..+++|+++++.+|.+.. + ..+..+.+|+.|
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence                          0000                           0 137899999999999888 4 678899999999


Q ss_pred             EccCCCCcccc-hhhhCCCCCC-EEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCE
Q 037920          173 CLRGSNIKMLP-IEVSELARLR-LLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS  250 (505)
Q Consensus       173 ~l~~~~l~~lp-~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  250 (505)
                      ++..+ ++.++ ..+.++++|+ .+.+.+  .+..++...+..+++|+.+++..+.+....       +..|.++++|+.
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-------~~aF~~~~~L~~  325 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLG-------DELFGNGVPSKL  325 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEEC-------TTTTCTTCCCCE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccc-------hhhhcCCcchhh
Confidence            99987 88775 4688999999 999976  677888777999999999999888875443       367889999998


Q ss_pred             EEe
Q 037920          251 LEL  253 (505)
Q Consensus       251 L~l  253 (505)
                      +..
T Consensus       326 ly~  328 (329)
T 3sb4_A          326 IYK  328 (329)
T ss_dssp             EEC
T ss_pred             hcc
Confidence            864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=1.7e-07  Score=92.19  Aligned_cols=187  Identities=12%  Similarity=0.189  Sum_probs=109.1

Q ss_pred             ccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCC
Q 037920           71 AIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLR  148 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~  148 (505)
                      .+.+++.+++.+|.+..++... .+.+|+.+.+  .  ..+..++...|.++.+|+.+++..+ ++.++. .|.+ .+|+
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l--p--~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLL--P--VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT  251 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC--C--TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred             CcccCCeeecCCCcceEechhhEeecccCEEEe--C--CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence            3455566666555555554433 4455666655  2  2245555566666666666666653 444333 3333 5666


Q ss_pred             eeEeeccCCCC--cccccCCCCCcEEEccCCCCc-----cc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEE
Q 037920          149 TLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-----ML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEEL  220 (505)
Q Consensus       149 ~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-----~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  220 (505)
                      .+.+.. .+..  ...+..+++|+.+++.++.+.     .+ +..+..+++|+.+.+..  .+..++...+..+++|+.+
T Consensus       252 ~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          252 TVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             EEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEE
T ss_pred             EEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEE
Confidence            666632 3444  355667777777777766443     34 24566777777777763  3666666667777777777


Q ss_pred             EeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--C-CCCcEEEE
Q 037920          221 YIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--F-PKLQRYKI  275 (505)
Q Consensus       221 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~-~~L~~L~~  275 (505)
                      .+..+ +...       -..+|.++ +|+.+.+.++....++...+  + .+++.+.+
T Consensus       329 ~lp~~-l~~I-------~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          329 TIPAN-VTQI-------NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             EECTT-CCEE-------CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             EECcc-ccEE-------cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence            77543 3222       23456777 78888888777666555443  2 35556655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=1.5e-08  Score=98.22  Aligned_cols=89  Identities=18%  Similarity=0.127  Sum_probs=41.6

Q ss_pred             CccccChhHHhCCCCccEEEEeC-CcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch
Q 037920          109 SSLTIPNKFFERMMQVRVINLTN-INLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI  184 (505)
Q Consensus       109 ~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~  184 (505)
                      .+..+|.  +..+.+|+.|+|++ |.++.+| ..|..+++|++|+|++|.+..  +..++.+++|++|+|++|+++.+|.
T Consensus        20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            3444444  34455555555553 5555443 234455555555555555444  2344455555555555555554443


Q ss_pred             hhhCCCCCCEEeeeC
Q 037920          185 EVSELARLRLLGLRD  199 (505)
Q Consensus       185 ~i~~l~~L~~L~l~~  199 (505)
                      .+.....|+.|++.+
T Consensus        98 ~~~~~~~L~~l~l~~  112 (347)
T 2ifg_A           98 KTVQGLSLQELVLSG  112 (347)
T ss_dssp             TTTCSCCCCEEECCS
T ss_pred             HHcccCCceEEEeeC
Confidence            322222255555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.72  E-value=1.9e-09  Score=105.23  Aligned_cols=157  Identities=14%  Similarity=0.096  Sum_probs=114.1

Q ss_pred             cccCCCcEEEecCCCCccCC-----CCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-----
Q 037920           70 SAIKLYTSIVLHDIRTNLLP-----EVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-----  137 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-----  137 (505)
                      ...+.++.+++++|.+....     ...  ..++|++|++  +++.....-...++..+++|+.|++++|.++..     
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL--ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC--TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe--cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            34678999999999984321     111  3479999999  444433322333445567899999999998752     


Q ss_pred             cccc-cCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCcc-----cchhhhCCCCCCEEeeeCCCCCCc
Q 037920          138 PSSL-GLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIKM-----LPIEVSELARLRLLGLRDCRELEV  205 (505)
Q Consensus       138 ~~~l-~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~  205 (505)
                      ...+ ...++|++|+|++|.++.  .    ..+..+++|++|++++|.++.     ++..+...++|++|++++|. ++.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~  225 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGD  225 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCH
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCH
Confidence            2223 357889999999999876  2    445788999999999998873     45667788999999999954 443


Q ss_pred             c-----ChhhhcCCCCccEEEeeCCCCCCc
Q 037920          206 I-----PANVLSNLSHLEELYIGYNSFGKW  230 (505)
Q Consensus       206 ~-----~~~~~~~l~~L~~L~l~~~~~~~~  230 (505)
                      .     +.. +...++|++|++++|.+.+.
T Consensus       226 ~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          226 TAALALARA-AREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHHH-HHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHHHH-HHhCCCCCEEeccCCCCCHH
Confidence            2     222 45678999999999998654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.69  E-value=5e-08  Score=94.44  Aligned_cols=105  Identities=13%  Similarity=0.135  Sum_probs=87.8

Q ss_pred             cEEEecCC-CCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEee
Q 037920           76 TSIVLHDI-RTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~  153 (505)
                      ..++.+++ .+..+|....+++|+.|+|  ++++.+..++...|..+++|++|+|++|.++.++ ..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l--~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYI--ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEEC--CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEc--cCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 8889998558899999999  3348888888877899999999999999999865 478999999999999


Q ss_pred             ccCCCC-cccccCCCCCcEEEccCCCCccc
Q 037920          154 NCKLLD-ITVVRDLKKLEILCLRGSNIKML  182 (505)
Q Consensus       154 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~l  182 (505)
                      +|.+.. |..+.....|+.|++.+|.+...
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCC
Confidence            999999 65544444499999999988743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.60  E-value=9.7e-07  Score=86.91  Aligned_cols=122  Identities=15%  Similarity=0.205  Sum_probs=65.2

Q ss_pred             CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCC
Q 037920           93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKL  169 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L  169 (505)
                      +|.+|+++.+  .  ..+..++...|.++.+|+.+++..+ ++.++ ..+..+..|+.+.+..+ +..  ...+..+..+
T Consensus        69 ~c~~L~~i~l--p--~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           69 GCRKVTEIKI--P--STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TCTTEEEEEC--C--TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             CCCCceEEEe--C--CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            6778888877  3  2356677777788888888887654 44443 35666777776665432 222  1223333222


Q ss_pred             cEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeC
Q 037920          170 EILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY  224 (505)
Q Consensus       170 ~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  224 (505)
                      ......  .+..+ ...+..+++|+.+.+..  .+..++...+..+++|+.+.+..
T Consensus       143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          143 EITIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             EEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred             ccccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence            222111  12222 23455666666666643  23445544455666666666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.59  E-value=9.5e-08  Score=92.39  Aligned_cols=180  Identities=17%  Similarity=0.212  Sum_probs=110.6

Q ss_pred             cCCCcEEEecCCCCcc---------CC-CCCCCCCccEEEeeecCCCC----c-----cccChhHHhCCCCccEEEEeCC
Q 037920           72 IKLYTSIVLHDIRTNL---------LP-EVVESPQLKLLFICADQESS----S-----LTIPNKFFERMMQVRVINLTNI  132 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~---------l~-~~~~~~~L~~L~l~~~~~~~----~-----~~~~~~~~~~l~~L~~L~l~~~  132 (505)
                      ...++.|.+.......         +. ....+++|++|.+  .....    .     ..+ ..++..+++|+.|+++++
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l--~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFW--GDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGT  182 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEE--CCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheee--cCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCC
Confidence            3456777776544321         11 1225788999988  22211    1     112 245678899999999887


Q ss_pred             cCccCcccccCCCCCCeeEeeccCCCC--ccccc--CCCCCcEEEccCC--------CCcccchhh--hCCCCCCEEeee
Q 037920          133 NLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVR--DLKKLEILCLRGS--------NIKMLPIEV--SELARLRLLGLR  198 (505)
Q Consensus       133 ~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~--~l~~L~~L~l~~~--------~l~~lp~~i--~~l~~L~~L~l~  198 (505)
                      .-..++. + .+++|++|++..|.+..  +..++  .+++|++|+|+.+        .+..+...+  ..+++|++|++.
T Consensus       183 ~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~  260 (362)
T 2ra8_A          183 NNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV  260 (362)
T ss_dssp             BTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE
T ss_pred             CCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC
Confidence            4234444 3 38899999998888766  45554  7889999988531        122232222  357889999998


Q ss_pred             CCCCCCccChhh--hcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920          199 DCRELEVIPANV--LSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN  259 (505)
Q Consensus       199 ~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (505)
                      +|......+...  ...+++|++|+++.|.+.+...   ..++..+..+++|+.|+++.|.++
T Consensus       261 ~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~---~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA---RLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH---HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH---HHHHhhcccCCcceEEECCCCcCC
Confidence            854332222221  1357789999998887754321   234445567788899998877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.57  E-value=1.5e-06  Score=85.56  Aligned_cols=144  Identities=17%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             ccCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCC
Q 037920           71 AIKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNL  147 (505)
Q Consensus        71 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L  147 (505)
                      .+.+++.+.+.. .+..++...  +|++|+++.+  . . ....++...|..+.+|+.+.+..+ ++.+. ..+..+..+
T Consensus        69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~l--p-~-~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINI--P-D-SVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECC--C-T-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEe--C-C-CceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            445556666543 244444332  5566666665  2 1 134455555566666655544432 22211 223333222


Q ss_pred             CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920          148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG  223 (505)
Q Consensus       148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  223 (505)
                      ...........+...+..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.+..+  +..++...+..+..|+.+.+.
T Consensus       143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred             ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence            211111111001234455566666666433 23332 23455566666655431  344444444555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=4.1e-08  Score=83.53  Aligned_cols=94  Identities=13%  Similarity=0.176  Sum_probs=68.5

Q ss_pred             cccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCccccc
Q 037920          386 PKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLR  465 (505)
Q Consensus       386 ~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~  465 (505)
                      .+|+.|++++|.+++.+...        +..+++|++|++++|..+++-    ++..+......+++|++|+|++|++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~--------L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH--------MEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG--------GTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHH--------hcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            35899999999876653321        678899999999999988843    333220000124689999999999986


Q ss_pred             ccccCCcccccCCCccceecccCcccee
Q 037920          466 NFCTGDVDILEFPSLKELIINRCPEFLM  493 (505)
Q Consensus       466 ~~~~~~~~~~~~~~L~~L~i~~C~~L~~  493 (505)
                      +-.-  ..+..+++|+.|++++||+++.
T Consensus       129 D~Gl--~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          129 DKGI--IALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHH--HHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHH--HHHhcCCCCCEEECCCCCCCCc
Confidence            5321  1256799999999999998875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=3.5e-07  Score=77.77  Aligned_cols=40  Identities=5%  Similarity=0.019  Sum_probs=17.5

Q ss_pred             ceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcc
Q 037920          310 GIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE  353 (505)
Q Consensus       310 ~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~  353 (505)
                      +|+.|++++|  .....-...+  .++++|++|++++|..+++.
T Consensus        62 ~L~~LDLs~~--~Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~  101 (176)
T 3e4g_A           62 KIQAIDATDS--CIMSIGFDHM--EGLQYVEKIRLCKCHYIEDG  101 (176)
T ss_dssp             CEEEEEEESC--CCCGGGGGGG--TTCSCCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCC--CccHHHHHHh--cCCCCCCEEEeCCCCccCHH
Confidence            3555555555  2222222223  34555555555555444433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.30  E-value=8.9e-07  Score=85.55  Aligned_cols=98  Identities=22%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             hcceeEEeecCCC-----CCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccc
Q 037920          308 LQGIEDLGLSKLP-----EQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEK  382 (505)
Q Consensus       308 ~~~L~~L~l~~~~-----~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~  382 (505)
                      +|+|+.|+|+.+.     ......+...+....+|+|+.|.+.+|..                     .+.. ...+...
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i---------------------~~~~-~~~la~a  275 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE---------------------QNVV-VEMFLES  275 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT---------------------HHHH-HHHHHHC
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC---------------------chHH-HHHHHhC
Confidence            5777777775310     01222333333224578899999888761                     1100 1111222


Q ss_pred             ccccccccccccccccccccccceeeccCccccccccccEEEEccccccc
Q 037920          383 VTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLE  432 (505)
Q Consensus       383 ~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~  432 (505)
                      +.+|+|++|+++.|.+.+.....+  ..  .+..+++|+.|++++|. +.
T Consensus       276 ~~~~~L~~LdLs~n~L~d~G~~~L--~~--~L~~l~~L~~L~L~~n~-i~  320 (362)
T 2ra8_A          276 DILPQLETMDISAGVLTDEGARLL--LD--HVDKIKHLKFINMKYNY-LS  320 (362)
T ss_dssp             SSGGGCSEEECCSSCCBHHHHHHH--HT--THHHHTTCSEEECCSBB-CC
T ss_pred             ccCCCCCEEECCCCCCChHHHHHH--Hh--hcccCCcceEEECCCCc-CC
Confidence            358889999998877766422111  11  14677888999988885 54

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.10  E-value=1.5e-06  Score=75.62  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=58.5

Q ss_pred             HhCCCCccEEEEeCC-cCcc-----CcccccCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCcc----
Q 037920          118 FERMMQVRVINLTNI-NLMS-----LPSSLGLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIKM----  181 (505)
Q Consensus       118 ~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~----  181 (505)
                      +...+.|+.|++++| .+..     +...+...++|++|+|++|.+.+  .    ..+...++|++|++++|.+..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456667777777776 5543     33445556666666666666654  1    333344566666666666652    


Q ss_pred             -cchhhhCCCCCCEEee--eCCCCCCcc-----ChhhhcCCCCccEEEeeCCCC
Q 037920          182 -LPIEVSELARLRLLGL--RDCRELEVI-----PANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       182 -lp~~i~~l~~L~~L~l--~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~  227 (505)
                       +...+...++|++|++  ++ +.++..     ... +...+.|++|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence             3344555556666666  44 233321     111 33445566666655543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.02  E-value=2.5e-06  Score=74.23  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=87.2

Q ss_pred             cccccCCCCCCeeEeecc-CCCC--c----ccccCCCCCcEEEccCCCCcc-----cchhhhCCCCCCEEeeeCCCCCCc
Q 037920          138 PSSLGLLSNLRTLSLDNC-KLLD--I----TVVRDLKKLEILCLRGSNIKM-----LPIEVSELARLRLLGLRDCRELEV  205 (505)
Q Consensus       138 ~~~l~~l~~L~~L~L~~~-~l~~--~----~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~  205 (505)
                      ...+...++|++|+|++| .+..  .    ..+...++|++|++++|.+..     +...+...++|++|++++| .++.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence            345677899999999999 7876  2    556678899999999998873     4556677789999999985 4443


Q ss_pred             -----cChhhhcCCCCccEEEe--eCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920          206 -----IPANVLSNLSHLEELYI--GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN  259 (505)
Q Consensus       206 -----~~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (505)
                           +... +...+.|++|++  ++|.+.+...   ..+...+...+.|+.|++++|.+.
T Consensus       108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~---~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE---MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH---HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH---HHHHHHHHhCCCcCEEeccCCCCC
Confidence                 2333 567788999999  7788765331   234556677788999999888753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.79  E-value=0.0008  Score=65.89  Aligned_cols=81  Identities=19%  Similarity=0.195  Sum_probs=47.7

Q ss_pred             hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccc
Q 037920          308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPK  387 (505)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (505)
                      +++|+.+.+..    .+..++...+ .++.+|+.+.+..+-       +.+.                ..   ....+.+
T Consensus       287 c~~L~~i~l~~----~i~~I~~~aF-~~c~~L~~i~lp~~v-------~~I~----------------~~---aF~~C~~  335 (394)
T 4gt6_A          287 CPALQDIEFSS----RITELPESVF-AGCISLKSIDIPEGI-------TQIL----------------DD---AFAGCEQ  335 (394)
T ss_dssp             CTTCCEEECCT----TCCEECTTTT-TTCTTCCEEECCTTC-------CEEC----------------TT---TTTTCTT
T ss_pred             ccccccccCCC----cccccCceee-cCCCCcCEEEeCCcc-------cEeh----------------Hh---HhhCCCC
Confidence            67788888754    3555555443 678888888886531       1110                00   0124667


Q ss_pred             cccccccccccccccccceeeccCccccccccccEEEEccc
Q 037920          388 LENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNC  428 (505)
Q Consensus       388 L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c  428 (505)
                      |+.+.|... ++.+....        +..+++|+.+.+.+.
T Consensus       336 L~~i~ip~s-v~~I~~~a--------F~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESA--------FSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCBCCGGG--------GTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCEEhHhH--------hhCCCCCCEEEECCc
Confidence            777777543 44443321        667788888888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.76  E-value=1.6e-05  Score=72.88  Aligned_cols=78  Identities=23%  Similarity=0.346  Sum_probs=36.9

Q ss_pred             CCCCCCeeEeeccCCCCc----ccccCCCCCcEEEccCCCCcccchhhhCCC--CCCEEeeeCCCCCCccC------hhh
Q 037920          143 LLSNLRTLSLDNCKLLDI----TVVRDLKKLEILCLRGSNIKMLPIEVSELA--RLRLLGLRDCRELEVIP------ANV  210 (505)
Q Consensus       143 ~l~~L~~L~L~~~~l~~~----~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~------~~~  210 (505)
                      ++++|+.|+|++|.+..+    ..+..+++|+.|+|++|.++.+. .+..+.  +|++|++.+|.....+|      ..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            345555555555555442    22334555555555555555441 223333  55555555544333232      112


Q ss_pred             hcCCCCccEEE
Q 037920          211 LSNLSHLEELY  221 (505)
Q Consensus       211 ~~~l~~L~~L~  221 (505)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45556666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.67  E-value=0.0011  Score=64.83  Aligned_cols=121  Identities=13%  Similarity=0.122  Sum_probs=67.8

Q ss_pred             CCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCee
Q 037920           74 LYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTL  150 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L  150 (505)
                      .++.+.+..+ ++.+....  +|.+|+.+.+..........+....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            4788888743 56665443  7889999888211122355677777777777777665543 33333 345667777777


Q ss_pred             EeeccCCCC--cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeee
Q 037920          151 SLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR  198 (505)
Q Consensus       151 ~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  198 (505)
                      .+..+ +..  ...+..+.+|+.+.+..+ ++.+........+|+.+.+.
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip  190 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP  190 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC
T ss_pred             cccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEEC
Confidence            77533 222  244455666666666543 33332222223445555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.55  E-value=6.9e-05  Score=68.61  Aligned_cols=60  Identities=28%  Similarity=0.401  Sum_probs=28.4

Q ss_pred             CCCCCcEEEccCCCCcccc---hhhhCCCCCCEEeeeCCCCCCccChhhhcCCC--CccEEEeeCCCC
Q 037920          165 DLKKLEILCLRGSNIKMLP---IEVSELARLRLLGLRDCRELEVIPANVLSNLS--HLEELYIGYNSF  227 (505)
Q Consensus       165 ~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~  227 (505)
                      ++++|+.|++++|+++.++   ..+..+++|+.|++++ +.+..+..  +..+.  +|++|++++|.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTT
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcC
Confidence            3455555555555554332   3344555555555555 33333311  22222  555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.40  E-value=0.019  Score=55.59  Aligned_cols=57  Identities=12%  Similarity=0.152  Sum_probs=32.7

Q ss_pred             cccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccc
Q 037920          384 TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKM  458 (505)
Q Consensus       384 ~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l  458 (505)
                      .+++|+.+.+.++.++.++...        ...+++|+.+.+..  .++.|.  ..      .-..|.+|+.+.+
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~a--------F~~c~~L~~i~lp~--~l~~I~--~~------aF~~C~~L~~i~i  340 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRV--------FMDCVKLSSVTLPT--ALKTIQ--VY------AFKNCKALSTISY  340 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTT--------TTTCTTCCEEECCT--TCCEEC--TT------TTTTCTTCCCCCC
T ss_pred             cccccccccccccccceehhhh--------hcCCCCCCEEEcCc--cccEEH--HH------HhhCCCCCCEEEE
Confidence            4667777777766666664432        56667777777742  245442  11      1234566776665

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.32  E-value=5.9e-05  Score=77.43  Aligned_cols=47  Identities=9%  Similarity=0.085  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHhhccccccccccccCcEEeehhhHHHHHHHHhcccc
Q 037920            4 ARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQN   51 (505)
Q Consensus         4 ~~~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~~e~~   51 (505)
                      .++.++ ||++|+++||++....++..+|+|||+||++|++++.+++.
T Consensus       427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            355666 99999999999998654567899999999999999887753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.90  E-value=0.058  Score=52.07  Aligned_cols=127  Identities=13%  Similarity=0.198  Sum_probs=70.8

Q ss_pred             hHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCC
Q 037920          116 KFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELAR  191 (505)
Q Consensus       116 ~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~  191 (505)
                      ..|..+.+|+.+.+..+ ++.+ ...+..+..|+.+.+..+ +..  ...+..+.+|+.+.+.. +++.++ ..+..+.+
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence            33456666666666543 2222 234556666777666543 333  24455566677766643 344443 24566677


Q ss_pred             CCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920          192 LRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH  254 (505)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  254 (505)
                      |+.+.+.+ +.+..++...+..+.+|+.+.+..+ +...       -..+|.++.+|+.+.+.
T Consensus       288 L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I-------~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          288 LTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTI-------QVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE-------CTTTTTTCTTCCCCCCC
T ss_pred             cccccccc-cccceehhhhhcCCCCCCEEEcCcc-ccEE-------HHHHhhCCCCCCEEEEC
Confidence            77777755 4455666555666777777776532 3221       12456666677766654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.65  E-value=0.012  Score=50.83  Aligned_cols=82  Identities=13%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             HhCCCCccEEEEeCC-cCcc-----CcccccCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCc-----
Q 037920          118 FERMMQVRVINLTNI-NLMS-----LPSSLGLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIK-----  180 (505)
Q Consensus       118 ~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~-----  180 (505)
                      ..+-+.|+.|+++++ .+..     +.+.+..-..|+.|+|++|.+.+  .    ..+..-+.|+.|+|+.|.|.     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345566777777664 5442     33445555666666666666654  1    23334455666666666554     


Q ss_pred             ccchhhhCCCCCCEEeeeC
Q 037920          181 MLPIEVSELARLRLLGLRD  199 (505)
Q Consensus       181 ~lp~~i~~l~~L~~L~l~~  199 (505)
                      .+...+..-+.|++|++++
T Consensus       117 ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhhCCceeEEECCC
Confidence            1222333334455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.54  E-value=0.01  Score=51.23  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=15.8

Q ss_pred             cCCCCCcEEEccCCCCc-----ccchhhhCCCCCCEEeeeC
Q 037920          164 RDLKKLEILCLRGSNIK-----MLPIEVSELARLRLLGLRD  199 (505)
Q Consensus       164 ~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~  199 (505)
                      ..-+.|+.|+|++|.+.     .+...+..=+.|++|+++.
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence            33444555555555443     2222333334455555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.18  E-value=0.063  Score=42.97  Aligned_cols=51  Identities=20%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             EEEEeCCcCc--cCcccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCC
Q 037920          126 VINLTNINLM--SLPSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSN  178 (505)
Q Consensus       126 ~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~  178 (505)
                      .++.+++.++  .+|..+  ..+|++|+|++|.|+. + ..+..+++|+.|+|.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4445555554  444322  1234444444444444 1 233344444444444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=93.91  E-value=0.034  Score=62.89  Aligned_cols=45  Identities=13%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhhccccccccccccCcEEeehhhHHHHHHHHhcc
Q 037920            5 RARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTE   49 (505)
Q Consensus         5 ~~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~~e   49 (505)
                      ++.+++++++|++++|++....+...+|+|||+||++|+..+.+|
T Consensus       408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            567899999999999999877555567999999999999987765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.55  E-value=0.13  Score=41.12  Aligned_cols=34  Identities=35%  Similarity=0.392  Sum_probs=15.7

Q ss_pred             CccEEEEeCCcCccCcc-cccCCCCCCeeEeeccC
Q 037920          123 QVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCK  156 (505)
Q Consensus       123 ~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~  156 (505)
                      +|+.|+|++|.|+.+|. .+..+++|++|+|.+|+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            34444444444444433 23444445555555444

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=89.42  E-value=0.21  Score=51.32  Aligned_cols=42  Identities=14%  Similarity=0.209  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHhhccccccccccccCcEEeehhhHHHHHHHHh
Q 037920            6 ARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIAS   47 (505)
Q Consensus         6 ~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~   47 (505)
                      ..+.+++++|++++|++...++...+|+|||++|++++....
T Consensus       409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence            467899999999999997665455689999999999988743

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=83.89  E-value=0.56  Score=50.84  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhhccccccccccccCcEEeehhhHHHHH
Q 037920            6 ARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAI   43 (505)
Q Consensus         6 ~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~   43 (505)
                      +.+.+++++|+++|||+...  +..+|+|||++++++.
T Consensus       402 edAe~~L~eLvdRSLLq~d~--~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          402 SDVMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKV  437 (1221)
T ss_dssp             HHHHHHHHHHHTSSSSSBCS--SSSEEBCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCEEEeC--CCCEEEehHHHHHHhc
Confidence            46889999999999999853  3678999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	505
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 27/180 (15%)

Query: 67  SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRV 126
           SD + + + T++    +  N L ++     L  L       +    +       + ++  
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 267

Query: 127 INLTNINLMSLPSSLGL---------------------LSNLRTLSLDNCKLLDITVVRD 165
           + L    + ++    GL                     L NL  L+L    + DI+ V  
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

Query: 166 LKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225
           L KL+ L    + +  +   ++ L  +  L     +  ++ P   L+NL+ + +L +   
Sbjct: 328 LTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 34/173 (19%)

Query: 121 MMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIK 180
           +  +  ++L   N +    +L  L+NL  L L N ++ ++  +  L KL  L L  + I 
Sbjct: 218 LTNLDELSLNG-NQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 276

Query: 181 MLP---------------------IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEE 219
            +                        +S L  L  L L      ++ P   +S+L+ L+ 
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQR 333

Query: 220 LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQR 272
           L+   N               SL  L ++  L      ++ L       ++ +
Sbjct: 334 LFFANNKVSDVS---------SLANLTNINWLSAGHNQISDLTPLANLTRITQ 377

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 47/357 (13%), Positives = 107/357 (29%), Gaps = 28/357 (7%)

Query: 144 LSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCREL 203
           L+      L    + D     DL ++  L      IK +   V  L  L  +   + +  
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT 79

Query: 204 EVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVK----NASLHELKHLTSLELHIKDVN 259
           ++ P   L NL+ L ++ +  N                     +++  +  L+       
Sbjct: 80  DITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 260 TLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKL 319
                     +            +   +        +   L+   I   +  +   L+KL
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 320 PEQDV-DYFVNELAKVGP----SQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVN 374
              +      N+++ + P    + L  L +  +       + ++  T    ++   L + 
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDELSLNGN-------QLKDIGTLASLTNLTDLDLA 249

Query: 375 VNAL--FVEKVTLPKLENLELDSINVERI-WQSHVAVMSCVSNNTFVRLQRIEIKNCRVL 431
            N +        L KL  L+L +  +  I   + +  ++ +  N         I N + L
Sbjct: 250 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 432 EELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRC 488
             L +  N     + +    +LQ L   +     N  +    +    ++  L     
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFAN-----NKVSDVSSLANLTNINWLSAGHN 361

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 44/365 (12%), Positives = 107/365 (29%), Gaps = 12/365 (3%)

Query: 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIE 185
           +  +     ++   S   L  + TL  D   +  I  V  L  L  +    + +  +   
Sbjct: 25  MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-P 83

Query: 186 VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHEL 245
           +  L +L  + + + +  ++ P   L+NL+ L             +      +       
Sbjct: 84  LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 143

Query: 246 KHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI 305
               S    +  +  L  G     L+                +   I   +K+   + LI
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 203

Query: 306 VQLQGIEDLGLSKLPE--QDVDYFVNELAKVGP-SQLKHLHIWNHPPNPAESKRREESTD 362
                I D+    +     ++    N+L  +G  + L +L   +   N   +        
Sbjct: 204 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 263

Query: 363 VMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSC-VSNNTFVRLQ 421
            +   ++      N   +  +T      L  + +       +   +    +  N    + 
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI- 322

Query: 422 RIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLK 481
              + +   L+ L    N+    +S+     + +L         N  +    +     + 
Sbjct: 323 -SPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH-----NQISDLTPLANLTRIT 376

Query: 482 ELIIN 486
           +L +N
Sbjct: 377 QLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILC 173
           QV  +    + + S+   +  L+NL  ++  N +L DIT +++L KL  + 
Sbjct: 45  QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 110 SLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKL 169
           S        +    +  +N++N  L+ LP+       L  L      L ++      + L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVP--ELPQNL 326

Query: 170 EILCLRGSNIKMLPIEVSELARLRL 194
           + L +  + ++  P     +  LR+
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 144 LSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCREL 203
             +L  L++ N KL+++       +LE L    +++  +P        L+ L +     L
Sbjct: 283 PPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVP---ELPQNLKQLHVEYNP-L 336

Query: 204 EVIPANVLSNLSHL 217
              P ++  ++  L
Sbjct: 337 REFP-DIPESVEDL 349

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 22/163 (13%)

Query: 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL--LDITVVRDLKKLEILCLRGSNIK 180
            +RV+  +++ L  +P    L  +   L L N K+  +     ++LK L  L L  + I 
Sbjct: 11  HLRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 181 ML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK---------- 229
            + P   + L +L  L L   + L+ +P  +   L  L           K          
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 230 ------WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
                   ++  G++N +   +K L+ + +   ++ T+P+GL 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 170

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 40/206 (19%)

Query: 80  LHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139
             +  T +   V       ++         S  I N  F+ M ++  I + + N+ ++P 
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 167

Query: 140 SLGLLSNLRTLSLDNCKLL--------------------------DITVVRDLKKLEILC 173
             GL  +L  L LD  K+                           D   + +   L  L 
Sbjct: 168 --GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 174 LRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANV------LSNLSHLEELYIGYNSF 227
           L  + +  +P  +++   ++++ L +   +  I +N        +  +    + +  N  
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

Query: 228 GKWEVEMEGVKNASLHELKHLTSLEL 253
             WE++      ++   +    +++L
Sbjct: 285 QYWEIQP-----STFRCVYVRAAVQL 305

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDIT-VVRDLKKLEILCLRGSNIKMLP 183
           RV++L +   +++   L  L  +  L L + +L  +   +  L+ LE+L    + ++ + 
Sbjct: 1   RVLHLAH-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 184 IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243
             V+ L RL+ L L + R  +      L +   L  L +  NS      + EG++     
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL----CQEEGIQERLAE 114

Query: 244 ELKHLTSL 251
            L  ++S+
Sbjct: 115 MLPSVSSI 122

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 108 SSSLTIPN--KFFERMMQVRVINLTNINL-------MSLPSSLGLLSNLRTLSLDNCKLL 158
           + + TI +  + FE    V       + L         + ++L  L   + L+L    + 
Sbjct: 2   AKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE 61

Query: 159 DITVVRDLKKLEILC 173
            I+ +  ++ L IL 
Sbjct: 62  KISSLSGMENLRILS 76

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 117 FFERMMQVRVINLTNINLM-SLPSSLGLLSNLRTLSLDNCKLL-DITVVRDLKKLEILCL 174
                  +  ++L N  +  +LP  L  L  L +L++    L  +I    +L++ ++   
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 175 RGSN 178
             + 
Sbjct: 299 ANNK 302

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 117 FFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLR 175
               + ++  +   +  +  +   L  L NL  + L N ++ D++ + +   L I+ L 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	505
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.95
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.37

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.5e-21  Score=190.71  Aligned_cols=323  Identities=18%  Similarity=0.247  Sum_probs=205.7

Q ss_pred             ccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCC
Q 037920           69 ESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLR  148 (505)
Q Consensus        69 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~  148 (505)
                      .+...++++|+++++.+++++....+++|++|++   .++.+..+++  ++++++|++|++++|.+..+++ +..+++|+
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~L---s~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~  113 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLT  113 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             HHHhCCCCEEECCCCCCCCccccccCCCCCEEeC---cCCcCCCCcc--ccCCcccccccccccccccccc-cccccccc
Confidence            3467789999999999988877778999999999   6667777875  6899999999999999988764 88999999


Q ss_pred             eeEeeccCCCCcccccCCCCCcEEEccCCCCcccch--------------------hhhCCCCCCEEeeeCCCCCCccCh
Q 037920          149 TLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI--------------------EVSELARLRLLGLRDCRELEVIPA  208 (505)
Q Consensus       149 ~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~l~~~~~~~~~~~  208 (505)
                      +|++.++.+.+.........+..+....+.+..+..                    .+............. +.. ....
T Consensus       114 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~  191 (384)
T d2omza2         114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS-NKV-SDIS  191 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS-SCC-CCCG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc-ccc-cccc
Confidence            999998888875555566677777666554433211                    111122222222221 111 1112


Q ss_pred             hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccc
Q 037920          209 NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRR  288 (505)
Q Consensus       209 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~  288 (505)
                      . ...+++++.+++++|.+.....         ...+++|+.|++++|.+..++....+++|+.+++..+.         
T Consensus       192 ~-~~~l~~~~~l~l~~n~i~~~~~---------~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~---------  252 (384)
T d2omza2         192 V-LAKLTNLESLIATNNQISDITP---------LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ---------  252 (384)
T ss_dssp             G-GGGCTTCSEEECCSSCCCCCGG---------GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC---------
T ss_pred             c-cccccccceeeccCCccCCCCc---------ccccCCCCEEECCCCCCCCcchhhcccccchhccccCc---------
Confidence            2 4566666777776665543221         34456667777776666655433235555555443111         


Q ss_pred             eEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhh
Q 037920          289 ELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHE  368 (505)
Q Consensus       289 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~  368 (505)
                               +.....+ ..+++|+.|+++++   .+..++. +  ..++.++.+.+..|.                    
T Consensus       253 ---------l~~~~~~-~~~~~L~~L~l~~~---~l~~~~~-~--~~~~~l~~l~~~~n~--------------------  296 (384)
T d2omza2         253 ---------ISNLAPL-SGLTKLTELKLGAN---QISNISP-L--AGLTALTNLELNENQ--------------------  296 (384)
T ss_dssp             ---------CCCCGGG-TTCTTCSEEECCSS---CCCCCGG-G--TTCTTCSEEECCSSC--------------------
T ss_pred             ---------cCCCCcc-cccccCCEeeccCc---ccCCCCc-c--ccccccccccccccc--------------------
Confidence                     0000011 11455666666554   2222222 2  345555555555543                    


Q ss_pred             hhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccc
Q 037920          369 IILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIV  448 (505)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~  448 (505)
                       +.+      +.....+++++.|++++|+++++.+          +..+|+|++|++++|. ++.+  +.        ..
T Consensus       297 -l~~------~~~~~~~~~l~~L~ls~n~l~~l~~----------l~~l~~L~~L~L~~n~-l~~l--~~--------l~  348 (384)
T d2omza2         297 -LED------ISPISNLKNLTYLTLYFNNISDISP----------VSSLTKLQRLFFANNK-VSDV--SS--------LA  348 (384)
T ss_dssp             -CSC------CGGGGGCTTCSEEECCSSCCSCCGG----------GGGCTTCCEEECCSSC-CCCC--GG--------GG
T ss_pred             -ccc------ccccchhcccCeEECCCCCCCCCcc----------cccCCCCCEEECCCCC-CCCC--hh--------Hc
Confidence             111      1223468899999999998887743          7889999999999995 7766  21        34


Q ss_pred             cccccccccccCcccccccccCCcccccCCCccceeccc
Q 037920          449 IFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINR  487 (505)
Q Consensus       449 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~  487 (505)
                      .+|+|++|++++++ ++++..    +..+++|+.|+|++
T Consensus       349 ~l~~L~~L~l~~N~-l~~l~~----l~~l~~L~~L~L~~  382 (384)
T d2omza2         349 NLTNINWLSAGHNQ-ISDLTP----LANLTRITQLGLND  382 (384)
T ss_dssp             GCTTCCEEECCSSC-CCBCGG----GTTCTTCSEEECCC
T ss_pred             CCCCCCEEECCCCc-CCCChh----hccCCCCCEeeCCC
Confidence            56999999999885 666554    67889999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.4e-19  Score=170.76  Aligned_cols=263  Identities=19%  Similarity=0.248  Sum_probs=180.8

Q ss_pred             CCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCccc
Q 037920          106 QESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKML  182 (505)
Q Consensus       106 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l  182 (505)
                      .+.....+|..+   .+++++|++++|.++++|+ .+.++++|++|++++|.+..  +..+.++++|++|++++|+++.+
T Consensus        18 ~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l   94 (305)
T d1xkua_          18 SDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL   94 (305)
T ss_dssp             TTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             cCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC
Confidence            344455666644   3568888888888888775 57888888888888888777  45678888888888888888888


Q ss_pred             chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCC
Q 037920          183 PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLP  262 (505)
Q Consensus       183 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~  262 (505)
                      |..  ....++.|.... +.+..++...+.....+..+....+....     ....+..+..+++|+.+++..+.+..+|
T Consensus        95 ~~~--~~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-----~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          95 PEK--MPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             CSS--CCTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccc--hhhhhhhhhccc-cchhhhhhhhhhccccccccccccccccc-----cCCCccccccccccCccccccCCccccC
Confidence            754  346788888877 55666666556677778888777654422     2334556778888999999888877766


Q ss_pred             CCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEE
Q 037920          263 RGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHL  342 (505)
Q Consensus       263 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L  342 (505)
                      ...                                          +++|+.|++.++  ......+..+  ..++.+++|
T Consensus       167 ~~~------------------------------------------~~~L~~L~l~~n--~~~~~~~~~~--~~~~~l~~L  200 (305)
T d1xkua_         167 QGL------------------------------------------PPSLTELHLDGN--KITKVDAASL--KGLNNLAKL  200 (305)
T ss_dssp             SSC------------------------------------------CTTCSEEECTTS--CCCEECTGGG--TTCTTCCEE
T ss_pred             ccc------------------------------------------CCccCEEECCCC--cCCCCChhHh--hcccccccc
Confidence            542                                          456777777776  4444455555  677888888


Q ss_pred             EEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccE
Q 037920          343 HIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQR  422 (505)
Q Consensus       343 ~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~  422 (505)
                      .+++|.....+                      ..   ....+++|++|++++|+++.++.+         +..+++|++
T Consensus       201 ~~s~n~l~~~~----------------------~~---~~~~l~~L~~L~L~~N~L~~lp~~---------l~~l~~L~~  246 (305)
T d1xkua_         201 GLSFNSISAVD----------------------NG---SLANTPHLRELHLNNNKLVKVPGG---------LADHKYIQV  246 (305)
T ss_dssp             ECCSSCCCEEC----------------------TT---TGGGSTTCCEEECCSSCCSSCCTT---------TTTCSSCCE
T ss_pred             ccccccccccc----------------------cc---cccccccceeeecccccccccccc---------cccccCCCE
Confidence            88887521100                      11   112578888899988888877543         778889999


Q ss_pred             EEEccccccccceecccccccccccccccccccccccCcc
Q 037920          423 IEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE  462 (505)
Q Consensus       423 L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~  462 (505)
                      |+++++. |+.+.  ...-.........++|+.|+|.+++
T Consensus       247 L~Ls~N~-i~~i~--~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         247 VYLHNNN-ISAIG--SNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EECCSSC-CCCCC--TTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EECCCCc-cCccC--hhhccCcchhcccCCCCEEECCCCc
Confidence            9998875 77763  2111110123455788888888887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.3e-19  Score=176.69  Aligned_cols=308  Identities=17%  Similarity=0.238  Sum_probs=183.6

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL  141 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l  141 (505)
                      +++.+.+...++++++|++++|.++++++..++++|+.|++   +++.+..+++  +..+++|+.|+++++.++.++. .
T Consensus        55 ~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L---~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~-~  128 (384)
T d2omza2          55 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM---NNNQIADITP--LANLTNLTGLTLFNNQITDIDP-L  128 (384)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccc---cccccccccc--cccccccccccccccccccccc-c
Confidence            35566677889999999999999999988889999999999   6666667765  6899999999999998887644 2


Q ss_pred             cCCCCCCeeEeeccCCCC---------------------cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCC
Q 037920          142 GLLSNLRTLSLDNCKLLD---------------------ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDC  200 (505)
Q Consensus       142 ~~l~~L~~L~L~~~~l~~---------------------~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  200 (505)
                      .....+..+....+.+..                     ...+.............+... .+.....+++++.+.+++ 
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~l~~-  206 (384)
T d2omza2         129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATN-  206 (384)
T ss_dssp             TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCS-
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc-cccccccccccceeeccC-
Confidence            344455555554443322                     111112222222222222221 123445556666666665 


Q ss_pred             CCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcce
Q 037920          201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGY  280 (505)
Q Consensus       201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~  280 (505)
                      +.+..++.  ....++|++|++++|.+...         ..+..+++|+.|++.+|.+..++....+++|+.+.+...  
T Consensus       207 n~i~~~~~--~~~~~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~--  273 (384)
T d2omza2         207 NQISDITP--LGILTNLDELSLNGNQLKDI---------GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN--  273 (384)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS--
T ss_pred             CccCCCCc--ccccCCCCEEECCCCCCCCc---------chhhcccccchhccccCccCCCCcccccccCCEeeccCc--
Confidence            33333333  34555666666666655332         124555666666666666655544333556666554311  


Q ss_pred             eecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccc
Q 037920          281 YYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREES  360 (505)
Q Consensus       281 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l  360 (505)
                                      .+.....+. .++.++.+.+..+   ....++ .+  ..+++++.|++++|.-.          
T Consensus       274 ----------------~l~~~~~~~-~~~~l~~l~~~~n---~l~~~~-~~--~~~~~l~~L~ls~n~l~----------  320 (384)
T d2omza2         274 ----------------QISNISPLA-GLTALTNLELNEN---QLEDIS-PI--SNLKNLTYLTLYFNNIS----------  320 (384)
T ss_dssp             ----------------CCCCCGGGT-TCTTCSEEECCSS---CCSCCG-GG--GGCTTCSEEECCSSCCS----------
T ss_pred             ----------------ccCCCCccc-ccccccccccccc---cccccc-cc--chhcccCeEECCCCCCC----------
Confidence                            010001111 2566777777766   222222 23  55778888888877511          


Q ss_pred             hhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccc
Q 037920          361 TDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQ  440 (505)
Q Consensus       361 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~  440 (505)
                                 +      +.....+|+|++|++++|+++.++.          +..+|+|++|++++|. ++.+.  . .
T Consensus       321 -----------~------l~~l~~l~~L~~L~L~~n~l~~l~~----------l~~l~~L~~L~l~~N~-l~~l~--~-l  369 (384)
T d2omza2         321 -----------D------ISPVSSLTKLQRLFFANNKVSDVSS----------LANLTNINWLSAGHNQ-ISDLT--P-L  369 (384)
T ss_dssp             -----------C------CGGGGGCTTCCEEECCSSCCCCCGG----------GGGCTTCCEEECCSSC-CCBCG--G-G
T ss_pred             -----------C------CcccccCCCCCEEECCCCCCCCChh----------HcCCCCCCEEECCCCc-CCCCh--h-h
Confidence                       1      1112357788888888887776642          6778888888888775 66663  2 2


Q ss_pred             cccccccccccccccccccCc
Q 037920          441 EERKNSIVIFPQLQYLKMDDL  461 (505)
Q Consensus       441 ~~~~~~~~~~p~L~~L~l~~~  461 (505)
                             ..+++|+.|+|++.
T Consensus       370 -------~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 -------ANLTRITQLGLNDQ  383 (384)
T ss_dssp             -------TTCTTCSEEECCCE
T ss_pred             -------ccCCCCCEeeCCCC
Confidence                   24588888888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=1.3e-18  Score=164.85  Aligned_cols=245  Identities=17%  Similarity=0.175  Sum_probs=137.9

Q ss_pred             CccEEEEeCCcCcc---CcccccCCCCCCeeEeec-cCCCC--cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEE
Q 037920          123 QVRVINLTNINLMS---LPSSLGLLSNLRTLSLDN-CKLLD--ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLL  195 (505)
Q Consensus       123 ~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~L~~-~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L  195 (505)
                      +++.|+++++.+..   +|++++++++|++|+|++ |.+.+  |..|+++++|++|++++|++..+ +..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45556666655542   556666666666666654 34443  55666666666666666666544 3345566666666


Q ss_pred             eeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCc-CEEEeecccCCC-CCCCCCCCCCcEE
Q 037920          196 GLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHL-TSLELHIKDVNT-LPRGLFFPKLQRY  273 (505)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~-l~~~~~~~~L~~L  273 (505)
                      +++.|.....+|.. ++.++.|+.+++++|.+       .+.+|..+..+..+ +.++++.|.+.. .|..+  .     
T Consensus       131 ~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l-------~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~-----  195 (313)
T d1ogqa_         131 DFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--A-----  195 (313)
T ss_dssp             ECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--G-----
T ss_pred             ccccccccccCchh-hccCcccceeecccccc-------ccccccccccccccccccccccccccccccccc--c-----
Confidence            66665444455554 56666666666666655       45555556655554 555565555432 11110  0     


Q ss_pred             EEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcc
Q 037920          274 KIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE  353 (505)
Q Consensus       274 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~  353 (505)
                                                        ......+++..+  .....+|...  ..+++++.+++.+|..    
T Consensus       196 ----------------------------------~l~~~~l~l~~~--~~~~~~~~~~--~~~~~l~~l~~~~~~l----  233 (313)
T d1ogqa_         196 ----------------------------------NLNLAFVDLSRN--MLEGDASVLF--GSDKNTQKIHLAKNSL----  233 (313)
T ss_dssp             ----------------------------------GCCCSEEECCSS--EEEECCGGGC--CTTSCCSEEECCSSEE----
T ss_pred             ----------------------------------cccccccccccc--cccccccccc--cccccccccccccccc----
Confidence                                              112223444444  3333444444  5567777777766541    


Q ss_pred             ccccccchhcchhhhhhhhccccccccccccccccccccccccccc-cccccceeeccCccccccccccEEEEccccccc
Q 037920          354 SKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVE-RIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLE  432 (505)
Q Consensus       354 ~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~  432 (505)
                                            .........+++|+.|++++|+++ .+|..         +..+++|++|+++++. ++
T Consensus       234 ----------------------~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~---------l~~L~~L~~L~Ls~N~-l~  281 (313)
T d1ogqa_         234 ----------------------AFDLGKVGLSKNLNGLDLRNNRIYGTLPQG---------LTQLKFLHSLNVSFNN-LC  281 (313)
T ss_dssp             ----------------------CCBGGGCCCCTTCCEEECCSSCCEECCCGG---------GGGCTTCCEEECCSSE-EE
T ss_pred             ----------------------cccccccccccccccccCccCeecccCChH---------HhCCCCCCEEECcCCc-cc
Confidence                                  001122235677778888877766 44432         6778888888888875 44


Q ss_pred             -cceecccccccccccccccccccccccCcccccc
Q 037920          433 -ELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRN  466 (505)
Q Consensus       433 -~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~  466 (505)
                       .+  ++        ...+.+|+.+.+.+++.+..
T Consensus       282 g~i--P~--------~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         282 GEI--PQ--------GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEC--CC--------STTGGGSCGGGTCSSSEEES
T ss_pred             ccC--CC--------cccCCCCCHHHhCCCccccC
Confidence             33  22        12457778888887775543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-18  Score=157.86  Aligned_cols=198  Identities=22%  Similarity=0.288  Sum_probs=165.5

Q ss_pred             cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeE
Q 037920           72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLS  151 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  151 (505)
                      ......++.++++++++|... .+++++|++   .++.+..++...|.++++|++|++++|.++.++. +..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~l-p~~l~~L~L---s~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDL-PKDTTILHL---SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCC-CTTCCEEEC---TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCeeCcCc-CcCCCEEEC---cCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence            345566788888888888643 268999999   6677788887778999999999999999998864 57899999999


Q ss_pred             eeccCCCC-cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          152 LDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       152 L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      +++|.+.. +..+..+++|+.|+++++.+..++ ..+..+.+++.|++.+ +.+..++...+..+++|+.+++++|.++.
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhcccccccccc
Confidence            99999988 788889999999999999888764 4567889999999998 56777877767889999999999998854


Q ss_pred             chhhhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEcceee
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYYY  282 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~~  282 (505)
                      .       .+..+..+++|+.|++++|.+..+|..+. +++|+.|.+..+.|..
T Consensus       163 ~-------~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         163 L-------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             C-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             c-------CccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            3       34668889999999999999999998876 8899999987666653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=4.3e-17  Score=153.49  Aligned_cols=173  Identities=18%  Similarity=0.264  Sum_probs=84.3

Q ss_pred             cCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920           72 IKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT  149 (505)
Q Consensus        72 ~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  149 (505)
                      ++++++|++++|+++.++..  ..+++|++|++   .++....+++..|.++++|++|++++|.++.+|..+  ...++.
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l---~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~  104 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL---INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQE  104 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC---CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCE
T ss_pred             CCCCCEEECcCCcCCCcChhHhhcccccccccc---ccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhh
Confidence            45555666666555555432  25555555555   333344444444455555555555555555555432  345555


Q ss_pred             eEeeccCCCC-c-ccccCCCCCcEEEccCCCCc---ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeC
Q 037920          150 LSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIK---MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY  224 (505)
Q Consensus       150 L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  224 (505)
                      |.+..+.+.. + ..+.....+..++...+...   ..+..+..+++|+.+++.+ +.+..++.   ..+++|++|++++
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~l~~---~~~~~L~~L~l~~  180 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQ---GLPPSLTELHLDG  180 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCS---SCCTTCSEEECTT
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc-CCccccCc---ccCCccCEEECCC
Confidence            5555555544 2 23334445555555444222   1123444555555555555 23333443   2244555555555


Q ss_pred             CCCCCchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920          225 NSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT  260 (505)
Q Consensus       225 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  260 (505)
                      |..       .+..+..+..++.++.|++++|.+..
T Consensus       181 n~~-------~~~~~~~~~~~~~l~~L~~s~n~l~~  209 (305)
T d1xkua_         181 NKI-------TKVDAASLKGLNNLAKLGLSFNSISA  209 (305)
T ss_dssp             SCC-------CEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CcC-------CCCChhHhhccccccccccccccccc
Confidence            544       22233445555555555555555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=6.1e-18  Score=160.02  Aligned_cols=204  Identities=16%  Similarity=0.178  Sum_probs=104.5

Q ss_pred             cChhHHhCCCCccEEEEeC-CcCc-cCcccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhh
Q 037920          113 IPNKFFERMMQVRVINLTN-INLM-SLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVS  187 (505)
Q Consensus       113 ~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~  187 (505)
                      +|.++ .++++|++|++++ |.+. .+|.+++++++|++|++++|.+.+  +..+..+.+|+.+++++|.+. .+|..+.
T Consensus        68 lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          68 IPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            44443 4556666666654 4444 355555566666666666655555  344555555666666555433 3455555


Q ss_pred             CCCCCCEEeeeCCCCCCccChhhhcCCCCc-cEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCCCC
Q 037920          188 ELARLRLLGLRDCRELEVIPANVLSNLSHL-EELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPRGL  265 (505)
Q Consensus       188 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~  265 (505)
                      ++++|+.+++++|...+.+|.. +..+..+ +.+.++.|.+       .+..+..+..+..+ .+++..+... ..|...
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l-------~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~  217 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL-------TGKIPPTFANLNLA-FVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE-------EEECCGGGGGCCCS-EEECCSSEEEECCGGGC
T ss_pred             cCcccceeeccccccccccccc-cccccccccccccccccc-------cccccccccccccc-ccccccccccccccccc
Confidence            5666666666554333345544 4444443 5555555544       33333444444332 3444443332 222222


Q ss_pred             C-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEE
Q 037920          266 F-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHI  344 (505)
Q Consensus       266 ~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l  344 (505)
                      . +++++.+.+......              +   .+..+ ..+++|+.|++++|  .....+|.++  ..+++|++|++
T Consensus       218 ~~~~~l~~l~~~~~~l~--------------~---~~~~~-~~~~~L~~L~Ls~N--~l~g~iP~~l--~~L~~L~~L~L  275 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLA--------------F---DLGKV-GLSKNLNGLDLRNN--RIYGTLPQGL--TQLKFLHSLNV  275 (313)
T ss_dssp             CTTSCCSEEECCSSEEC--------------C---BGGGC-CCCTTCCEEECCSS--CCEECCCGGG--GGCTTCCEEEC
T ss_pred             ccccccccccccccccc--------------c---ccccc-ccccccccccCccC--eecccCChHH--hCCCCCCEEEC
Confidence            1 344444433211000              0   00011 11567888888887  4445788877  67888888888


Q ss_pred             eCCC
Q 037920          345 WNHP  348 (505)
Q Consensus       345 ~~~~  348 (505)
                      ++|.
T Consensus       276 s~N~  279 (313)
T d1ogqa_         276 SFNN  279 (313)
T ss_dssp             CSSE
T ss_pred             cCCc
Confidence            8875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=2.7e-16  Score=150.85  Aligned_cols=313  Identities=21%  Similarity=0.197  Sum_probs=181.8

Q ss_pred             CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920           73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL  152 (505)
Q Consensus        73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L  152 (505)
                      .++++|++++++++++|+.  .++|++|++   +++.+..+|..    +.+|+.|++++|.++.++.-   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~L---s~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVA---SCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEEC---CSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEEC---CCCCCcccccc----hhhhhhhhhhhcccchhhhh---ccccccccc
Confidence            4688999999999888863  578999999   66677788753    56899999999988877531   246999999


Q ss_pred             eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920          153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                      ++|.+..++.++.+++|++|+++++.+...+..   ...+..+.+..+. ......  ++.++.++.+.+.++....+..
T Consensus       106 ~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~-~~~~~~--l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         106 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCC
T ss_pred             cccccccccchhhhccceeeccccccccccccc---cccccchhhcccc-cccccc--ccccccceeccccccccccccc
Confidence            999988855678899999999999888766543   3556677765532 222222  6778888888888776543211


Q ss_pred             hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920          233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE  312 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~  312 (505)
                                 .....+.+....+.+..++....++.++.+.+..+.                 ....+    ....++.
T Consensus       180 -----------~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-----------------~~~~~----~~~~~l~  227 (353)
T d1jl5a_         180 -----------LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-----------------LKTLP----DLPPSLE  227 (353)
T ss_dssp             -----------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-----------------CSSCC----SCCTTCC
T ss_pred             -----------cccccccccccccccccccccccccccccccccccc-----------------ccccc----ccccccc
Confidence                       112233444444444444443335555554432110                 00000    0123445


Q ss_pred             EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc--chhcchhhhhhhhcccccccccccccccccc
Q 037920          313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE--STDVMQSHEIILKVNVNALFVEKVTLPKLEN  390 (505)
Q Consensus       313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  390 (505)
                      .+.+..+   .....+     ...+.+....+..+....   +..+.  ......        ....+......+|+|++
T Consensus       228 ~~~~~~~---~~~~~~-----~~~~~l~~~~~~~~~~~~---l~~l~~~~~~~~~--------~~~~~~~~~~~~~~L~~  288 (353)
T d1jl5a_         228 ALNVRDN---YLTDLP-----ELPQSLTFLDVSENIFSG---LSELPPNLYYLNA--------SSNEIRSLCDLPPSLEE  288 (353)
T ss_dssp             EEECCSS---CCSCCC-----CCCTTCCEEECCSSCCSE---ESCCCTTCCEEEC--------CSSCCSEECCCCTTCCE
T ss_pred             ccccccc---cccccc-----cccccccccccccccccc---cccccchhccccc--------ccCccccccccCCCCCE
Confidence            5555444   111111     112334444443332110   11110  000000        00011111134678888


Q ss_pred             ccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccC
Q 037920          391 LELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTG  470 (505)
Q Consensus       391 L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~  470 (505)
                      |++++|+++.++            ..+++|++|++++|. ++++  ++          ..++|++|++++|+ +++++..
T Consensus       289 L~Ls~N~l~~lp------------~~~~~L~~L~L~~N~-L~~l--~~----------~~~~L~~L~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         289 LNVSNNKLIELP------------ALPPRLERLIASFNH-LAEV--PE----------LPQNLKQLHVEYNP-LREFPDI  342 (353)
T ss_dssp             EECCSSCCSCCC------------CCCTTCCEEECCSSC-CSCC--CC----------CCTTCCEEECCSSC-CSSCCCC
T ss_pred             EECCCCccCccc------------cccCCCCEEECCCCc-CCcc--cc----------ccCCCCEEECcCCc-CCCCCcc
Confidence            888888877763            236788888888775 6666  22          13678888888887 7776542


Q ss_pred             CcccccCCCccceecc
Q 037920          471 DVDILEFPSLKELIIN  486 (505)
Q Consensus       471 ~~~~~~~~~L~~L~i~  486 (505)
                            .++|+.|.+.
T Consensus       343 ------~~~L~~L~~~  352 (353)
T d1jl5a_         343 ------PESVEDLRMN  352 (353)
T ss_dssp             ------CTTCCEEECC
T ss_pred             ------ccccCeeECc
Confidence                  2456666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-17  Score=152.96  Aligned_cols=197  Identities=21%  Similarity=0.308  Sum_probs=157.6

Q ss_pred             CCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCCcccccCCCCCcEE
Q 037920           94 SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEIL  172 (505)
Q Consensus        94 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L  172 (505)
                      ...+.+++.   .+..+..+|+.+   .+++++|++++|.++.+| ..+.++++|++|++++|.++.++.++.+++|++|
T Consensus         9 ~~~~~~v~C---~~~~L~~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNC---DKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (266)
T ss_dssp             STTCCEEEC---TTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             cCCCeEEEc---cCCCCCeeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccc
Confidence            344555555   555667788754   367999999999999876 4688999999999999999886667889999999


Q ss_pred             EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      ++++|+++..+..+..+++|+.|+++++ ....++...+..+.++++|++.+|.+...       .+..+..+++++.++
T Consensus        83 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n~l~~l-------~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL-------PPGLLTPTPKLEKLS  154 (266)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccc-ccceeecccccccccccccccccccccee-------ccccccccccchhcc
Confidence            9999999988888899999999999984 45555555478889999999999887443       335677889999999


Q ss_pred             eecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920          253 LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA  332 (505)
Q Consensus       253 l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  332 (505)
                      +++|++..++...                                       ...+++|+.|+|++|   .++.+|..+ 
T Consensus       155 l~~N~l~~~~~~~---------------------------------------~~~l~~L~~L~Ls~N---~L~~lp~~~-  191 (266)
T d1p9ag_         155 LANNNLTELPAGL---------------------------------------LNGLENLDTLLLQEN---SLYTIPKGF-  191 (266)
T ss_dssp             CTTSCCSCCCTTT---------------------------------------TTTCTTCCEEECCSS---CCCCCCTTT-
T ss_pred             cccccccccCccc---------------------------------------cccccccceeecccC---CCcccChhH-
Confidence            9999988776542                                       112688999999998   567888877 


Q ss_pred             ccCCCCccEEEEeCCC
Q 037920          333 KVGPSQLKHLHIWNHP  348 (505)
Q Consensus       333 ~~~l~~L~~L~l~~~~  348 (505)
                       ..+++|+.|++++|+
T Consensus       192 -~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         192 -FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             -TTTCCCSEEECCSCC
T ss_pred             -CCCCCCCEEEecCCC
Confidence             568999999999987

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.3e-16  Score=141.33  Aligned_cols=167  Identities=25%  Similarity=0.364  Sum_probs=126.8

Q ss_pred             cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT  149 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  149 (505)
                      ..+.++++++++++.+..++....+++|++|++   +++.+..++.  +..+++|++|++++|.++.+| .+..+++|++
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L---~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL---NGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred             HHhcCccEEECcCCCCCCchhHhhCCCCCEEeC---CCccccCccc--cccCccccccccccccccccc-cccccccccc
Confidence            346688889999888888877678888888888   5555666664  467888888888888888776 4778888888


Q ss_pred             eEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          150 LSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       150 L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      |++.+|.+..+..+..+++++.++++++.++..+ .+..+++|+++++++| .+..++.  +..+++|++|++++|.+++
T Consensus       117 L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~--l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccccccccccccc-ccccccc--ccCCCCCCEEECCCCCCCC
Confidence            8888888777667778888888888888777654 5677888888888874 4555554  6788888888888887643


Q ss_pred             chhhhhccccccccCCCCcCEEEeec
Q 037920          230 WEVEMEGVKNASLHELKHLTSLELHI  255 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (505)
                      .        + .+..+++|+.|++++
T Consensus       193 l--------~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 L--------R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             C--------G-GGTTCTTCSEEEEEE
T ss_pred             C--------h-hhcCCCCCCEEEccC
Confidence            2        2 377788888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.2e-17  Score=151.84  Aligned_cols=208  Identities=23%  Similarity=0.378  Sum_probs=161.7

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEe-CCcCccC-
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLT-NINLMSL-  137 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~l-  137 (505)
                      +++.++. ..+..++.|++++|.++.++..  .++++|+.|++   +++.+..++...+..+..++.++.. .+.++.+ 
T Consensus        22 ~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l---s~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          22 GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL---HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             CCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhcccccccccc---cccccccccccccccccccccccccccccccccc
Confidence            3555543 4567889999999999888763  38899999999   6777777777777888888888765 4456665 


Q ss_pred             cccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCC
Q 037920          138 PSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNL  214 (505)
Q Consensus       138 ~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l  214 (505)
                      +..+.++++|++|++++|.+..  ...+....+|+.+++++|.++.+| ..+..+++|++|++++ +.+..++...+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTC
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc-Ccccccchhhhccc
Confidence            5578889999999999998876  467778889999999999998886 4567889999999998 46777777667889


Q ss_pred             CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEccee
Q 037920          215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGYY  281 (505)
Q Consensus       215 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~~~  281 (505)
                      ++|+++++.+|.+       .+..|..|..+++|+.|+++.|.+..++....  +++|+.+++..+.|.
T Consensus       177 ~~L~~l~l~~N~l-------~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         177 HSLDRLLLHQNRV-------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccchhhhhhccc-------cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            9999999999887       44456788999999999999999887665331  566666666544443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.3e-16  Score=138.44  Aligned_cols=163  Identities=23%  Similarity=0.308  Sum_probs=124.3

Q ss_pred             cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920           70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT  149 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  149 (505)
                      ..++++++|+++++.+.+++....+++|++|++   +++.+..+++  +.++++|++|++++|.+..++. +..+++|++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~L---s~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCcc---ccccccCccc--ccCCcccccccccccccccccc-ccccccccc
Confidence            456788899999998888877778888888888   4555666655  5788888888888888877753 778888888


Q ss_pred             eEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920          150 LSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK  229 (505)
Q Consensus       150 L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (505)
                      |+++++.+.....+..+++|+.|++++|++..++ .+..+++|+.|++.+ +.+..++.  ++.+++|++|++++|.+++
T Consensus       111 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~--l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         111 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSS-NQVTDLKP--LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccc-ccccCCcc--ccCCCCCCEEECCCCCCCC
Confidence            8888887777666778888888888888887765 577888888888887 45556654  6788888888888887754


Q ss_pred             chhhhhccccccccCCCCcCEE
Q 037920          230 WEVEMEGVKNASLHELKHLTSL  251 (505)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L  251 (505)
                      ++         .+..+++|+.|
T Consensus       187 i~---------~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS---------VLAKLTNLESL  199 (199)
T ss_dssp             CG---------GGGGCTTCSEE
T ss_pred             Cc---------cccCCCCCCcC
Confidence            32         35667777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=5e-16  Score=139.39  Aligned_cols=191  Identities=17%  Similarity=0.252  Sum_probs=160.3

Q ss_pred             CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920           67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN  146 (505)
Q Consensus        67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~  146 (505)
                      .....+.+++.|++.+|.+.+++....+++|+.|++   .++.+..+.+  +..+++|++++++++.++.++ .+..+++
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~l---s~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~  108 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLEL---KDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQS  108 (227)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred             CCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeec---CCceeecccc--ccccccccccccccccccccc-ccccccc
Confidence            344567899999999999999987779999999999   5556666655  689999999999999998875 5889999


Q ss_pred             CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCC
Q 037920          147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS  226 (505)
Q Consensus       147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  226 (505)
                      |++++++++....+..+...+.+..+.++++.+...+ .+.++++|++|++.+| .+...+.  ++.+++|++|++++|.
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNK  184 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchhh-hhcccccccccccccc-ccccchh--hcccccceecccCCCc
Confidence            9999999998888777888999999999998887664 5778899999999885 4444444  7899999999999998


Q ss_pred             CCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEE
Q 037920          227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIH  276 (505)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~  276 (505)
                      +.+.+         .+..+++|+.|++++|+++.++.-..+++|+.|+++
T Consensus       185 l~~l~---------~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         185 ISDIS---------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCG---------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             cCCCh---------hhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            75432         378899999999999999988764448999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.1e-16  Score=143.87  Aligned_cols=218  Identities=19%  Similarity=0.243  Sum_probs=165.5

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeec
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDN  154 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~  154 (505)
                      ..+..++++++++|... .+++++|++   +++.+..++...|.++++|++|+++++.+..++ ..+..+..++.+....
T Consensus        14 ~~v~c~~~~L~~iP~~i-p~~~~~L~L---s~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGI-PAASQRIFL---HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCCccCCCC-CCCCCEEEC---cCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            34666777778887643 357899999   666778888877899999999999999988754 4556788888887754


Q ss_pred             cC-CCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCc
Q 037920          155 CK-LLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW  230 (505)
Q Consensus       155 ~~-l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  230 (505)
                      +. +..  +..+..+++|++|++++|.+..++ ..+...++|+.+++++ +.++.++...+..+++|+.|++++|.+.  
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~--  166 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRIS--  166 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCccc--
Confidence            44 666  577888999999999999887664 4567788999999998 6677787666788899999999998874  


Q ss_pred             hhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcc
Q 037920          231 EVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQG  310 (505)
Q Consensus       231 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~  310 (505)
                           +-.+..+..+++|+.+++..|.+..++...                                      + ..+++
T Consensus       167 -----~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~--------------------------------------f-~~l~~  202 (284)
T d1ozna_         167 -----SVPERAFRGLHSLDRLLLHQNRVAHVHPHA--------------------------------------F-RDLGR  202 (284)
T ss_dssp             -----EECTTTTTTCTTCCEEECCSSCCCEECTTT--------------------------------------T-TTCTT
T ss_pred             -----ccchhhhccccccchhhhhhccccccChhH--------------------------------------h-hhhhh
Confidence                 334467888999999999988877544321                                      1 12578


Q ss_pred             eeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920          311 IEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP  348 (505)
Q Consensus       311 L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~  348 (505)
                      |+.|++++|  ......+..+  ..+++|++|++++|+
T Consensus       203 L~~L~l~~N--~i~~~~~~~~--~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         203 LMTLYLFAN--NLSALPTEAL--APLRALQYLRLNDNP  236 (284)
T ss_dssp             CCEEECCSS--CCSCCCHHHH--TTCTTCCEEECCSSC
T ss_pred             ccccccccc--cccccccccc--ccccccCEEEecCCC
Confidence            888888888  3334444555  678999999999886

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.1e-16  Score=137.60  Aligned_cols=175  Identities=22%  Similarity=0.272  Sum_probs=141.9

Q ss_pred             ecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC
Q 037920           80 LHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD  159 (505)
Q Consensus        80 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~  159 (505)
                      +..+.+........+.+++.|.+   .++.+..++.  +..+++|++|++++|.++.+++ ++.+++|++|++++|.+..
T Consensus        25 l~~~~~~~~~~~~~l~~l~~L~l---~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          25 LGKTNVTDTVSQTDLDQVTTLQA---DRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             TTCSSTTSEECHHHHTTCCEEEC---TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             hCCCCCCCccCHHHhcCCCEEEC---CCCCCCCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccccc
Confidence            34444444433346789999999   5666666654  5789999999999999999865 8999999999999999888


Q ss_pred             cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhcccc
Q 037920          160 ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKN  239 (505)
Q Consensus       160 ~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  239 (505)
                      ++.+..+++|+.|+++++.+...+ .+.++++|+.|++++| .+..++.  +..+++|++|++.+|.+++.+        
T Consensus        99 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~~~~L~~L~l~~n~l~~l~--------  166 (199)
T d2omxa2          99 ITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLNFSSNQVTDLK--------  166 (199)
T ss_dssp             CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCCCG--------
T ss_pred             cccccccccccccccccccccccc-ccchhhhhHHhhhhhh-hhccccc--ccccccccccccccccccCCc--------
Confidence            767899999999999999887764 5788999999999984 5566654  789999999999999886542        


Q ss_pred             ccccCCCCcCEEEeecccCCCCCCCCCCCCCcEE
Q 037920          240 ASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRY  273 (505)
Q Consensus       240 ~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L  273 (505)
                       .+.++++|+.|++++|+++.++.-..+++|+.|
T Consensus       167 -~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         167 -PLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             -cccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence             378999999999999999887653347777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=3.3e-15  Score=143.16  Aligned_cols=302  Identities=18%  Similarity=0.176  Sum_probs=177.6

Q ss_pred             CCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEc
Q 037920           95 PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCL  174 (505)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l  174 (505)
                      .++++|++   ++..++.+|+    ..++|++|++++|.++++|..   ..+|+.|++.+|.+..++.+  .++|++|++
T Consensus        38 ~~l~~LdL---s~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELEL---NNLGLSSLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEEC---TTSCCSCCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEEC
T ss_pred             cCCCEEEe---CCCCCCCCCC----CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh--ccccccccc
Confidence            46788888   5556667775    256888889998888888865   35788888888877764332  246888899


Q ss_pred             cCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920          175 RGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH  254 (505)
Q Consensus       175 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  254 (505)
                      ++|.++.+|. ++++++|++|++.++ .+...+.    ....+..+.+..+...         ....+..++.++.+.+.
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~----~~~~l~~l~~~~~~~~---------~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPD----LPPSLEFIAAGNNQLE---------ELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS---------SCCCCTTCTTCCEEECC
T ss_pred             cccccccccc-hhhhccceeeccccc-ccccccc----ccccccchhhcccccc---------ccccccccccceecccc
Confidence            8888888874 678888999888874 3333332    3455666766654332         23446778888889888


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhcc
Q 037920          255 IKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKV  334 (505)
Q Consensus       255 ~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  334 (505)
                      .+.....+...  ...+.+...                  .......... ..++.++.+++.++   ....++     .
T Consensus       171 ~n~~~~~~~~~--~~~~~l~~~------------------~~~~~~~~~~-~~l~~L~~l~l~~n---~~~~~~-----~  221 (353)
T d1jl5a_         171 NNSLKKLPDLP--LSLESIVAG------------------NNILEELPEL-QNLPFLTTIYADNN---LLKTLP-----D  221 (353)
T ss_dssp             SSCCSSCCCCC--TTCCEEECC------------------SSCCSSCCCC-TTCTTCCEEECCSS---CCSSCC-----S
T ss_pred             ccccccccccc--ccccccccc------------------cccccccccc-cccccccccccccc---cccccc-----c
Confidence            88776655432  122222211                  0100001111 12677888888876   223333     2


Q ss_pred             CCCCccEEEEeCCCCCCcc-ccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCcc
Q 037920          335 GPSQLKHLHIWNHPPNPAE-SKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVS  413 (505)
Q Consensus       335 ~l~~L~~L~l~~~~~~~~~-~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~  413 (505)
                      ...++..+.+..+...... ....+....+.  .+.+.+        -..........++..+.+..+            
T Consensus       222 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~--------l~~l~~~~~~~~~~~~~~~~~------------  279 (353)
T d1jl5a_         222 LPPSLEALNVRDNYLTDLPELPQSLTFLDVS--ENIFSG--------LSELPPNLYYLNASSNEIRSL------------  279 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCCCCCTTCCEEECC--SSCCSE--------ESCCCTTCCEEECCSSCCSEE------------
T ss_pred             ccccccccccccccccccccccccccccccc--cccccc--------cccccchhcccccccCccccc------------
Confidence            3456777777666521110 01111100000  000000        000011112222222222222            


Q ss_pred             ccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCcccee
Q 037920          414 NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLM  493 (505)
Q Consensus       414 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~  493 (505)
                      ...+|+|++|++++|. ++.+  +.          .+++|+.|++.+|. +++++.      .+++|++|++++|+ |++
T Consensus       280 ~~~~~~L~~L~Ls~N~-l~~l--p~----------~~~~L~~L~L~~N~-L~~l~~------~~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         280 CDLPPSLEELNVSNNK-LIEL--PA----------LPPRLERLIASFNH-LAEVPE------LPQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             CCCCTTCCEEECCSSC-CSCC--CC----------CCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSSC-CSS
T ss_pred             cccCCCCCEEECCCCc-cCcc--cc----------ccCCCCEEECCCCc-CCcccc------ccCCCCEEECcCCc-CCC
Confidence            3457899999999996 7766  32          24899999999885 777654      25789999999996 887


Q ss_pred             ee
Q 037920          494 RY  495 (505)
Q Consensus       494 ~~  495 (505)
                      +.
T Consensus       339 lp  340 (353)
T d1jl5a_         339 FP  340 (353)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.1e-16  Score=136.83  Aligned_cols=165  Identities=24%  Similarity=0.304  Sum_probs=140.5

Q ss_pred             CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEE
Q 037920           93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEIL  172 (505)
Q Consensus        93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L  172 (505)
                      .+.+|+.|++   .++.+..++.  +..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++.+..+++|+.|
T Consensus        44 ~L~~L~~L~l---~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIA---NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEEC---TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred             HhcCccEEEC---cCCCCCCchh--HhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccc
Confidence            5678999999   6666666664  5889999999999999999864 78999999999999999997789999999999


Q ss_pred             EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      ++++|.+..++ .+.++++|+.+++++ +.+...+.  +..+++|+++++++|.+.+..         .+.++++|+.|+
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~-n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~---------~l~~l~~L~~L~  184 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDIV---------PLAGLTKLQNLY  184 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCCCG---------GGTTCTTCCEEE
T ss_pred             ccccccccccc-ccccccccccccccc-cccccccc--ccccccccccccccccccccc---------cccCCCCCCEEE
Confidence            99999888775 688999999999988 45555554  688999999999999885432         378999999999


Q ss_pred             eecccCCCCCCCCCCCCCcEEEEE
Q 037920          253 LHIKDVNTLPRGLFFPKLQRYKIH  276 (505)
Q Consensus       253 l~~~~~~~l~~~~~~~~L~~L~~~  276 (505)
                      +++|.++.++.-..+++|+.|+++
T Consensus       185 Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCCCChhhcCCCCCCEEEcc
Confidence            999999988754448999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.5e-14  Score=129.47  Aligned_cols=175  Identities=19%  Similarity=0.274  Sum_probs=148.7

Q ss_pred             cCCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc
Q 037920           62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL  141 (505)
Q Consensus        62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l  141 (505)
                      +++.+.+...+++++++++++|.+..+.+...+++++.+.+   .++....++.  +.++++|++++++++....++ .+
T Consensus        52 ~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~---~~n~~~~i~~--l~~l~~L~~l~l~~~~~~~~~-~~  125 (227)
T d1h6ua2          52 GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL---SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT-PL  125 (227)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC---CSCCCSCCGG--GTTCTTCCEEECTTSCCCCCG-GG
T ss_pred             CCCcchhHhcCCCCcEeecCCceeecccccccccccccccc---cccccccccc--ccccccccccccccccccccc-hh
Confidence            45667778889999999999999988887789999999999   5556666764  678999999999999887764 36


Q ss_pred             cCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEE
Q 037920          142 GLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY  221 (505)
Q Consensus       142 ~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  221 (505)
                      ...+.++.+.+..+.+.....+..+++|++|++++|.++..+ .+.++++|+.|++++| .+..++.  ++.+++|++|+
T Consensus       126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~--l~~l~~L~~L~  201 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISDISP--LASLPNLIEVH  201 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEE
T ss_pred             ccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCC-ccCCChh--hcCCCCCCEEE
Confidence            788999999999988888666788999999999999888765 4889999999999995 6777765  78999999999


Q ss_pred             eeCCCCCCchhhhhccccccccCCCCcCEEEeec
Q 037920          222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI  255 (505)
Q Consensus       222 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (505)
                      +++|.+++.+         .+.++++|+.|++++
T Consensus       202 Ls~N~lt~i~---------~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         202 LKNNQISDVS---------PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTSCCCBCG---------GGTTCTTCCEEEEEE
T ss_pred             CcCCcCCCCc---------ccccCCCCCEEEeeC
Confidence            9999886542         388999999999873

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.1e-15  Score=138.71  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=57.1

Q ss_pred             ccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--c-ccccCCCCCcEEEccCCCCcc-cchhhhCCCCCCEEeeeC
Q 037920          124 VRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--I-TVVRDLKKLEILCLRGSNIKM-LPIEVSELARLRLLGLRD  199 (505)
Q Consensus       124 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~  199 (505)
                      +..+.+....+...........+|++|++++|.+..  + ..+.++++|++|++++|.++. .+..+.++++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            334444444433322333445567777777666554  2 445566777777777766552 244566667777777776


Q ss_pred             CCCCCccCh-hhhcCCCCccEEEeeCCC
Q 037920          200 CRELEVIPA-NVLSNLSHLEELYIGYNS  226 (505)
Q Consensus       200 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~  226 (505)
                      |..++...- .....+++|++|++++|.
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             cccccccccchhhHHHHhcccccccccc
Confidence            665543221 113456667777666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.5e-15  Score=137.02  Aligned_cols=225  Identities=17%  Similarity=0.099  Sum_probs=125.8

Q ss_pred             cEEEEeCCcCccCcccccCC--CCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCc--ccchhhhCCCCCCEEeeeC
Q 037920          125 RVINLTNINLMSLPSSLGLL--SNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIK--MLPIEVSELARLRLLGLRD  199 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l--~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~  199 (505)
                      +.+|++++.+..  +.+..+  .....+.+..+.+.. ........+|++|++++|.++  .++..+.++++|++|++.+
T Consensus         3 ~~lDLs~~~l~~--~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCc--hHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            467777765531  211111  123444554444444 344456678999999988765  3455677889999999988


Q ss_pred             CCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeeccc-CCCCCCCCCCCCCcEEEEEEc
Q 037920          200 CRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKD-VNTLPRGLFFPKLQRYKIHIG  278 (505)
Q Consensus       200 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~~~~~  278 (505)
                      |......+.. ++.+++|++|++++|....     ...+...+..+++|+.|+++++. +..                  
T Consensus        81 ~~l~~~~~~~-l~~~~~L~~L~Ls~c~~it-----d~~l~~l~~~~~~L~~L~ls~c~~~~~------------------  136 (284)
T d2astb2          81 LRLSDPIVNT-LAKNSNLVRLNLSGCSGFS-----EFALQTLLSSCSRLDELNLSWCFDFTE------------------  136 (284)
T ss_dssp             CBCCHHHHHH-HTTCTTCSEEECTTCBSCC-----HHHHHHHHHHCTTCCEEECCCCTTCCH------------------
T ss_pred             cCCCcHHHHH-HhcCCCCcCcccccccccc-----ccccchhhHHHHhcccccccccccccc------------------
Confidence            7533333444 6788889999988864321     11122234556778888887543 111                  


Q ss_pred             ceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCC-CcchhhhhhhccCCCCccEEEEeCCCCCCcccccc
Q 037920          279 GYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQ-DVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRR  357 (505)
Q Consensus       279 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~  357 (505)
                                         ......+...+++|+.|++.++... ....+....  ..+++|++|++++|..++...+..
T Consensus       137 -------------------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~--~~~~~L~~L~L~~~~~itd~~~~~  195 (284)
T d2astb2         137 -------------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKNDCFQE  195 (284)
T ss_dssp             -------------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             -------------------ccchhhhcccccccchhhhcccccccccccccccc--cccccccccccccccCCCchhhhh
Confidence                               0011112232456777777765111 112222222  456777777777776444332222


Q ss_pred             ccchhcchhhhhhhhcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEccc
Q 037920          358 EESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNC  428 (505)
Q Consensus       358 L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c  428 (505)
                      +                        ..+|+|++|++++| ++++.....        +..+|+|++|++.+|
T Consensus       196 l------------------------~~~~~L~~L~L~~C~~i~~~~l~~--------L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 F------------------------FQLNYLQHLSLSRCYDIIPETLLE--------LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             G------------------------GGCTTCCEEECTTCTTCCGGGGGG--------GGGCTTCCEEECTTS
T ss_pred             h------------------------cccCcCCEEECCCCCCCChHHHHH--------HhcCCCCCEEeeeCC
Confidence            2                        24677777777777 565432211        556677777777776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5e-13  Score=120.63  Aligned_cols=101  Identities=21%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCccc-c-hhhhCCCCCCEEeeeCC
Q 037920          125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKML-P-IEVSELARLRLLGLRDC  200 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p-~~i~~l~~L~~L~l~~~  200 (505)
                      ++++.++..++.+|..+.  +++++|++++|.+.. + ..+..+++|++|++++|.+... + ..+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            455555555555554432  345555555555554 2 2345555555555555544332 1 23445555555555544


Q ss_pred             CCCCccChhhhcCCCCccEEEeeCCCC
Q 037920          201 RELEVIPANVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~  227 (505)
                      +.+..++...+..+++|+++++.+|.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred             ccccccccccccccccccccccchhhh
Confidence            444444443345555555555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=9e-14  Score=111.04  Aligned_cols=100  Identities=27%  Similarity=0.295  Sum_probs=49.5

Q ss_pred             cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCC
Q 037920          125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCREL  203 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~  203 (505)
                      |+|++++|.++.++. +..+++|++|++++|.+.. |+.++.+++|++|++++|.++.+| .+.++++|++|++++ +.+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-Ccc
Confidence            345555555555432 4555555555555555555 344555555555555555555553 345555555555555 333


Q ss_pred             CccCh-hhhcCCCCccEEEeeCCCC
Q 037920          204 EVIPA-NVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       204 ~~~~~-~~~~~l~~L~~L~l~~~~~  227 (505)
                      ..++. ..++.+++|+.|++++|.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcC
Confidence            33331 1134455555555555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.5e-14  Score=118.66  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=80.4

Q ss_pred             HhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEe
Q 037920          118 FERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLG  196 (505)
Q Consensus       118 ~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~  196 (505)
                      |.++.++|.|++++|.|+.++..+..+++|++|++++|.+..++.+..+++|++|++++|+++.+|.. +..+++|++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            34566677777777777777655566777777777777776655666777777777777777766544 34567777777


Q ss_pred             eeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920          197 LRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE  252 (505)
Q Consensus       197 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  252 (505)
                      +++ +.+..++. ..+..+++|++|++++|.+...+    +..+..+..+++|+.||
T Consensus        94 L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~----~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKK----HYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGST----THHHHHHHHCTTCSEET
T ss_pred             ecc-ccccccccccccccccccchhhcCCCcccccc----chHHHHHHHCCCcCeeC
Confidence            776 34444432 22566677777777766553321    01112345566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.9e-13  Score=108.05  Aligned_cols=97  Identities=23%  Similarity=0.357  Sum_probs=57.6

Q ss_pred             cEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCC
Q 037920           98 KLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGS  177 (505)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~  177 (505)
                      |+|++   +++.+..++.  +..+++|++|++++|.++.+|+.+..+++|++|++++|.++.++.++.+++|++|++++|
T Consensus         1 R~L~L---s~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHL---AHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEEC---TTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             CEEEc---CCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCC
Confidence            34455   3333344443  355666666666666666666666666666666666666666445666666666666666


Q ss_pred             CCcccc--hhhhCCCCCCEEeeeC
Q 037920          178 NIKMLP--IEVSELARLRLLGLRD  199 (505)
Q Consensus       178 ~l~~lp--~~i~~l~~L~~L~l~~  199 (505)
                      +++.++  ..+..+++|+.|++++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             ccCCCCCchhhcCCCCCCEEECCC
Confidence            666554  2456666666666666

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.8e-12  Score=115.62  Aligned_cols=199  Identities=17%  Similarity=0.192  Sum_probs=133.0

Q ss_pred             CCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeC-CcCcc-Cc
Q 037920           63 YREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN-INLMS-LP  138 (505)
Q Consensus        63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~-l~  138 (505)
                      ++.++. ..+.+++.|++++|.+..++..  .++++|++|++  .++.....++...|.+++.++.+++.. +.+.. .+
T Consensus        20 l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~l--s~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          20 VTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI--SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             CSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEE--ESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhh--ccccccceeecccccccccccccccccccccccccc
Confidence            444443 3456788899998888887763  37888999988  555555556666678888888888765 45555 34


Q ss_pred             ccccCCCCCCeeEeeccCCCCc---ccccCCCCCcEEEccCCCCcccc-hhhhCC-CCCCEEeeeCCCCCCccChhhhcC
Q 037920          139 SSLGLLSNLRTLSLDNCKLLDI---TVVRDLKKLEILCLRGSNIKMLP-IEVSEL-ARLRLLGLRDCRELEVIPANVLSN  213 (505)
Q Consensus       139 ~~l~~l~~L~~L~L~~~~l~~~---~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~  213 (505)
                      ..+..+++|++++++++.+..+   ..+..+..+..+...++.+..++ ..+..+ ..++.|++.+ +.+..++.. ...
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~-~~~  174 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNC-AFN  174 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-TTT
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccc-ccc
Confidence            5578888899999988887763   33344555655566666777664 334444 4678888876 566677765 455


Q ss_pred             CCCccEEE-eeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEE
Q 037920          214 LSHLEELY-IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYK  274 (505)
Q Consensus       214 l~~L~~L~-l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~  274 (505)
                      .++++++. +.+|.++.++       +..+.++++|+.|++++|++..+|... +.++..|.
T Consensus       175 ~~~l~~~~~l~~n~l~~l~-------~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~~l~~L~  228 (242)
T d1xwdc1         175 GTQLDELNLSDNNNLEELP-------NDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLR  228 (242)
T ss_dssp             TCCEEEEECTTCTTCCCCC-------TTTTTTSCCCSEEECTTSCCCCCCSSS-CTTCCEEE
T ss_pred             chhhhcccccccccccccc-------HHHhcCCCCCCEEECCCCcCCccCHHH-HcCCcccc
Confidence            66666654 4545554332       234778899999999998888887653 45555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.3e-13  Score=111.98  Aligned_cols=101  Identities=19%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cc-cccCCCCCcEEEccCCCCcccch--hhhCCCCCCE
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-IT-VVRDLKKLEILCLRGSNIKMLPI--EVSELARLRL  194 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~-~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~  194 (505)
                      ..+++|++|++++|.++.++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|+++.++.  .+..+++|++
T Consensus        38 ~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY  116 (162)
T ss_dssp             GGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             cccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccch
Confidence            34455555555555555442 24455555555555555544 22 22345555555555555544432  3444555555


Q ss_pred             EeeeCCCCCCccCh---hhhcCCCCccEEE
Q 037920          195 LGLRDCRELEVIPA---NVLSNLSHLEELY  221 (505)
Q Consensus       195 L~l~~~~~~~~~~~---~~~~~l~~L~~L~  221 (505)
                      |++++| .+...+.   ..+..+++|+.|+
T Consensus       117 L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         117 LCILRN-PVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhcCCC-ccccccchHHHHHHHCCCcCeeC
Confidence            555552 2233331   1244455555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=2.9e-12  Score=110.98  Aligned_cols=124  Identities=19%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCC
Q 037920          125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDC  200 (505)
Q Consensus       125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~  200 (505)
                      +.++.+++.++.+|..+.  +++++|+|++|.++.   ...++.+++|+.|++++|++..++ ..+..+++|++|++++ 
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-
Confidence            456666666666665542  566666666666654   245566666666666666666553 4455666666666666 


Q ss_pred             CCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccC
Q 037920          201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV  258 (505)
Q Consensus       201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (505)
                      +.+..++.+.+..+++|++|++++|.+...       .+..|..+++|++|++++|.+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i-------~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV-------MPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEE-------CTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccCHHHHhCCCcccccccCCcccccc-------CHHHhcCCccccccccccccc
Confidence            455566555566666677777766666322       234566666677777666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.1e-11  Score=107.20  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=68.3

Q ss_pred             cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCc-cccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEee
Q 037920           76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSS-LTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~  153 (505)
                      ++++.+++++.++|... .++++.|++   .++.+ ..++...|.++++|+.|++++|.+..+ +..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~L---s~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLL---NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEEC---CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEe---CCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35666666666666432 245666666   33333 234444456666666666666666553 3355556666666666


Q ss_pred             ccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCC
Q 037920          154 NCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDC  200 (505)
Q Consensus       154 ~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~  200 (505)
                      +|.+..  +..+..+++|++|++++|+++.+|+ .+..+++|++|++++|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            666655  2445556666666666666665543 3455566666666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.8e-13  Score=130.91  Aligned_cols=361  Identities=14%  Similarity=0.074  Sum_probs=181.4

Q ss_pred             CCcEEEecCCCCccC--CC-CCCCCCccEEEeeecCCCCccc-----cChhHHhCCCCccEEEEeCCcCcc-----Cccc
Q 037920           74 LYTSIVLHDIRTNLL--PE-VVESPQLKLLFICADQESSSLT-----IPNKFFERMMQVRVINLTNINLMS-----LPSS  140 (505)
Q Consensus        74 ~l~~l~l~~~~~~~l--~~-~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~  140 (505)
                      +++.|+++++++...  .. ...++++++|.+  .++. +..     +. ..+..+++|+.|++++|.++.     +...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L--~~~~-i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRL--DDCG-LTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEE--ESSC-CCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEe--CCCC-CCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            578899999988442  22 227788999999  4443 332     22 234788999999999998763     2223


Q ss_pred             cc-CCCCCCeeEeeccCCCC------cccccCCCCCcEEEccCCCCccc-----chhhh---------------------
Q 037920          141 LG-LLSNLRTLSLDNCKLLD------ITVVRDLKKLEILCLRGSNIKML-----PIEVS---------------------  187 (505)
Q Consensus       141 l~-~l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~l-----p~~i~---------------------  187 (505)
                      +. ...+|++|++++|.+++      +..+..+++|++|++++|.+...     ...+.                     
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence            32 23579999999998865      14567789999999998876521     11111                     


Q ss_pred             --------CCCCCCEEeeeCCCCCCc----cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeec
Q 037920          188 --------ELARLRLLGLRDCRELEV----IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI  255 (505)
Q Consensus       188 --------~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (505)
                              ....++.+.++.+.....    ..............+.+..+.......   ......+...+.++.+++..
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~~  235 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC---RDLCGIVASKASLRELALGS  235 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH---HHHHHHHHHCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhh---hcccccccccccccccchhh
Confidence                    123333343333211000    000000112233444444443322111   11222345567788899887


Q ss_pred             ccCCC------CCCCCC-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcc---
Q 037920          256 KDVNT------LPRGLF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVD---  325 (505)
Q Consensus       256 ~~~~~------l~~~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---  325 (505)
                      +....      ++.... ...++.+++..+....             .............+.++.++++++  ....   
T Consensus       236 n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~-------------~~~~~~~~~l~~~~~l~~l~l~~n--~i~~~~~  300 (460)
T d1z7xw1         236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-------------KGCGDLCRVLRAKESLKELSLAGN--ELGDEGA  300 (460)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-------------HHHHHHHHHHHHCTTCCEEECTTC--CCHHHHH
T ss_pred             ccccccccchhhcccccccccccccccccccccc-------------cccccccccccccccccccccccc--ccccccc
Confidence            76421      111111 4556666553110000             000000111223567888888887  2221   


Q ss_pred             -hhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccccccccccccccc
Q 037920          326 -YFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQS  404 (505)
Q Consensus       326 -~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  404 (505)
                       .+...+ ......|+.+.+++|. +.......+                    .......++|++|++++|++.+.+..
T Consensus       301 ~~l~~~l-~~~~~~L~~l~l~~~~-l~~~~~~~l--------------------~~~~~~~~~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         301 RLLCETL-LEPGCQLESLWVKSCS-FTAACCSHF--------------------SSVLAQNRFLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             HHHHHHH-TSTTCCCCEEECTTSC-CBGGGHHHH--------------------HHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             chhhccc-cccccccccccccccc-hhhhhhhhc--------------------ccccccccchhhhheeeecccCcccc
Confidence             222222 1345678888888875 111111111                    01112356788888888766542111


Q ss_pred             ceeeccCccc-cccccccEEEEccccccccceecccccccccccccccccccccccCcccccc--cccCCcccc-cCCCc
Q 037920          405 HVAVMSCVSN-NTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRN--FCTGDVDIL-EFPSL  480 (505)
Q Consensus       405 ~~~v~~c~~l-~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~--~~~~~~~~~-~~~~L  480 (505)
                      .+    +..+ ...+.|++|++++|. +++.    ++..+...+..+++|++|+|++++ +..  +......+. ....|
T Consensus       359 ~l----~~~l~~~~~~L~~L~Ls~n~-i~~~----~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L  428 (460)
T d1z7xw1         359 EL----CQGLGQPGSVLRVLWLADCD-VSDS----SCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLL  428 (460)
T ss_dssp             HH----HHHHTSTTCCCCEEECTTSC-CCHH----HHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCC
T ss_pred             hh----hhhhhcccCCCCEEECCCCC-CChH----HHHHHHHHHhcCCCCCEEECCCCc-CCHHHHHHHHHHHHhCCCcc
Confidence            00    0002 234568888888885 5532    111111123445788888888774 321  000000111 23467


Q ss_pred             cceecccC
Q 037920          481 KELIINRC  488 (505)
Q Consensus       481 ~~L~i~~C  488 (505)
                      +.|.+.++
T Consensus       429 ~~l~l~~~  436 (460)
T d1z7xw1         429 EQLVLYDI  436 (460)
T ss_dssp             CEEECTTC
T ss_pred             CEEECCCC
Confidence            77877776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=2.1e-13  Score=118.64  Aligned_cols=106  Identities=24%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEee
Q 037920          119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGL  197 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  197 (505)
                      ..+++|+.|++++|.|+.++ .+..+++|++|++++|.+.. +.....+++|+.|++++|+++.++ .+..+++|+.|++
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred             hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            45556666666666555553 35555555555555555555 222233345555555555555443 3445555555555


Q ss_pred             eCCCCCCccCh-hhhcCCCCccEEEeeCCCC
Q 037920          198 RDCRELEVIPA-NVLSNLSHLEELYIGYNSF  227 (505)
Q Consensus       198 ~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  227 (505)
                      ++ +.+..++. ..+..+++|+.|++++|.+
T Consensus       123 ~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         123 SN-NKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SE-EECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cc-chhccccccccccCCCccceeecCCCcc
Confidence            55 23333321 1144555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=5.1e-13  Score=116.18  Aligned_cols=123  Identities=15%  Similarity=0.187  Sum_probs=92.7

Q ss_pred             CCcEEEecCC--CCccCCC-CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920           74 LYTSIVLHDI--RTNLLPE-VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL  150 (505)
Q Consensus        74 ~l~~l~l~~~--~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  150 (505)
                      ..+.+++.+.  .+..++. ...+++|+.|++   .++.+..++.  +..+++|++|++++|.++.+|.....+++|++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~L---s~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLAL---STNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEEC---SEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeEC---cccCCCCccc--ccCCccccChhhccccccccccccccccccccc
Confidence            3455555543  2333332 237888899988   5566667764  578889999999999888887666667789999


Q ss_pred             EeeccCCCCcccccCCCCCcEEEccCCCCcccc--hhhhCCCCCCEEeeeCCC
Q 037920          151 SLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP--IEVSELARLRLLGLRDCR  201 (505)
Q Consensus       151 ~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~  201 (505)
                      ++++|.++.++.+..+++|++|++++|+++.++  ..+..+++|+.|++++|.
T Consensus        99 ~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            999988888767888889999999998888775  357888999999998853

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.5e-12  Score=127.13  Aligned_cols=364  Identities=21%  Similarity=0.176  Sum_probs=176.0

Q ss_pred             CCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-----CcccccCCCCCCeeEeeccCCCC--ccccc---
Q 037920           95 PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-----LPSSLGLLSNLRTLSLDNCKLLD--ITVVR---  164 (505)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~~~i~---  164 (505)
                      .+|++|++  +++...+.--..++..++++++|++++|.++.     ++..+..+++|++|+|++|.++.  ...+.   
T Consensus         2 ~~l~~ld~--~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDI--QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEE--ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEe--eCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            35777888  33333322223445667888888888887763     34556777888888888877754  22221   


Q ss_pred             --CCCCCcEEEccCCCCcc-----cchhhhCCCCCCEEeeeCCCCCCccC-----hhhhcCCCCccEEEeeCCCCCCchh
Q 037920          165 --DLKKLEILCLRGSNIKM-----LPIEVSELARLRLLGLRDCRELEVIP-----ANVLSNLSHLEELYIGYNSFGKWEV  232 (505)
Q Consensus       165 --~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~  232 (505)
                        ...+|++|++++|+++.     ++..+..+++|++|++++|. ++...     ........................ 
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-  157 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-  157 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhh-
Confidence              23468888888887753     34456677788888887743 33211     110111222333333322221110 


Q ss_pred             hhhccccccccCCCCcCEEEeecccCCCC-----CCCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHH
Q 037920          233 EMEGVKNASLHELKHLTSLELHIKDVNTL-----PRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI  305 (505)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-----~~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~  305 (505)
                        .......+...+.++.+.++.+.....     .....  ......+........             ...........
T Consensus       158 --~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~l  222 (460)
T d1z7xw1         158 --CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT-------------SDNCRDLCGIV  222 (460)
T ss_dssp             --HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB-------------TTHHHHHHHHH
T ss_pred             --hccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------chhhhcccccc
Confidence              111223345556677777765543210     00000  112222222100000             00001111122


Q ss_pred             HHhcceeEEeecCCCCCCcch----hhhhhhccCCCCccEEEEeCCCCCCcc------cccccc-chhcchhhhhhhhcc
Q 037920          306 VQLQGIEDLGLSKLPEQDVDY----FVNELAKVGPSQLKHLHIWNHPPNPAE------SKRREE-STDVMQSHEIILKVN  374 (505)
Q Consensus       306 ~~~~~L~~L~l~~~~~~~~~~----~~~~l~~~~l~~L~~L~l~~~~~~~~~------~l~~L~-l~~l~~~~~~~~~~~  374 (505)
                      ...+.++.+.+.++  .....    ..... ......++.+++++|......      .+.... +..+.+..+.+.+..
T Consensus       223 ~~~~~~~~l~~~~n--~~~~~~~~~~~~~~-~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         223 ASKASLRELALGSN--KLGDVGMAELCPGL-LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHCTTCCEEECCSS--BCHHHHHHHHHHHH-TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             cccccccccchhhc--cccccccchhhccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            23566777777766  22211    11111 134567777777777521110      011111 222222222222211


Q ss_pred             ccccccc-cccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccccccccccccc
Q 037920          375 VNALFVE-KVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQL  453 (505)
Q Consensus       375 ~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L  453 (505)
                      ...+... ....+.|+.+.+++|.+.......+  ..+  ....++|++|+++++. +++.+...-...+   ....+.|
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l--~~~--~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l---~~~~~~L  371 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHF--SSV--LAQNRFLLELQISNNR-LEDAGVRELCQGL---GQPGSVL  371 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH--HHH--HHHCSSCCEEECCSSB-CHHHHHHHHHHHH---TSTTCCC
T ss_pred             cchhhccccccccccccccccccchhhhhhhhc--ccc--cccccchhhhheeeec-ccCcccchhhhhh---hcccCCC
Confidence            1111111 1234578889898886654422111  111  4556789999999986 6532111100000   1235779


Q ss_pred             ccccccCccccccc--ccCCcccccCCCccceecccCc
Q 037920          454 QYLKMDDLEKLRNF--CTGDVDILEFPSLKELIINRCP  489 (505)
Q Consensus       454 ~~L~l~~~~~L~~~--~~~~~~~~~~~~L~~L~i~~C~  489 (505)
                      ++|++.+|. +...  ......+..+++|+.|++++.+
T Consensus       372 ~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         372 RVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             CEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            999999995 6431  1112235568999999999873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=4.6e-11  Score=113.50  Aligned_cols=136  Identities=14%  Similarity=0.096  Sum_probs=73.4

Q ss_pred             hCCCCccEEEEeCCcCcc-----CcccccCCCCCCeeEeeccCCCC------------cccccCCCCCcEEEccCCCCcc
Q 037920          119 ERMMQVRVINLTNINLMS-----LPSSLGLLSNLRTLSLDNCKLLD------------ITVVRDLKKLEILCLRGSNIKM  181 (505)
Q Consensus       119 ~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~------------~~~i~~l~~L~~L~l~~~~l~~  181 (505)
                      .....|+.|++++|.+..     +...+...++|+.|+++++....            ...+..+++|+.|++++|.++.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            556677777777766542     33345566677777776554322            1223456677777777765542


Q ss_pred             -----cchhhhCCCCCCEEeeeCCCCCCccC-----hh--------hhcCCCCccEEEeeCCCCCCchhhhhcccccccc
Q 037920          182 -----LPIEVSELARLRLLGLRDCRELEVIP-----AN--------VLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH  243 (505)
Q Consensus       182 -----lp~~i~~l~~L~~L~l~~~~~~~~~~-----~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  243 (505)
                           +...+...++|++|++++|. ++...     ..        .....+.|+.+.+++|.+.+...   ..+...+.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~---~~l~~~l~  183 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM---KEWAKTFQ  183 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH---HHHHHHHH
T ss_pred             ccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccccccccccc---ccccchhh
Confidence                 33345556677777776643 22110     00        01345566777776665543221   12333445


Q ss_pred             CCCCcCEEEeecccC
Q 037920          244 ELKHLTSLELHIKDV  258 (505)
Q Consensus       244 ~l~~L~~L~l~~~~~  258 (505)
                      ..+.|+.|+++.|.+
T Consensus       184 ~~~~L~~L~L~~n~i  198 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGI  198 (344)
T ss_dssp             HCTTCCEEECCSSCC
T ss_pred             hhhhhcccccccccc
Confidence            556666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=1.8e-10  Score=109.31  Aligned_cols=240  Identities=14%  Similarity=0.079  Sum_probs=140.3

Q ss_pred             cccCCCcEEEecCCCCcc-----CC-CCCCCCCccEEEeeecCCCCcc-ccC------hhHHhCCCCccEEEEeCCcCcc
Q 037920           70 SAIKLYTSIVLHDIRTNL-----LP-EVVESPQLKLLFICADQESSSL-TIP------NKFFERMMQVRVINLTNINLMS  136 (505)
Q Consensus        70 ~~~~~l~~l~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~~~~~~-~~~------~~~~~~l~~L~~L~l~~~~~~~  136 (505)
                      .....++.|++++|.+..     +. .....++|+.|.+.+....... ..+      ...+..+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            346678888888887622     21 2336788888888211111111 111      1223567888888888887664


Q ss_pred             -----CcccccCCCCCCeeEeeccCCCC--ccc-------------ccCCCCCcEEEccCCCCc-----ccchhhhCCCC
Q 037920          137 -----LPSSLGLLSNLRTLSLDNCKLLD--ITV-------------VRDLKKLEILCLRGSNIK-----MLPIEVSELAR  191 (505)
Q Consensus       137 -----l~~~l~~l~~L~~L~L~~~~l~~--~~~-------------i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~  191 (505)
                           +...+...++|++|++++|.+..  ...             ....+.|+.+.+++++++     .+...+...+.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence                 34455667888888888887643  111             124667888888887665     23445666778


Q ss_pred             CCEEeeeCCCCCCcc-----ChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC
Q 037920          192 LRLLGLRDCRELEVI-----PANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF  266 (505)
Q Consensus       192 L~~L~l~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~  266 (505)
                      |+.|++++|. +...     ....+...++|+.|++++|.+....   ...+...+...++|+.|++++|.+....    
T Consensus       188 L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g---~~~L~~~l~~~~~L~~L~Ls~n~i~~~g----  259 (344)
T d2ca6a1         188 LHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARG----  259 (344)
T ss_dssp             CCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHH----
T ss_pred             hccccccccc-ccccccccchhhhhcchhhhcccccccccccccc---cccccccccccccchhhhhhcCccCchh----
Confidence            8888887753 3221     1112456778888888877764321   1234455677788888888877653210    


Q ss_pred             CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHH-HhcceeEEeecCCCCC--CcchhhhhhhccCCCCccEEE
Q 037920          267 FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIV-QLQGIEDLGLSKLPEQ--DVDYFVNELAKVGPSQLKHLH  343 (505)
Q Consensus       267 ~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~l~~~~l~~L~~L~  343 (505)
                                                    .......+.. ..+.|++|++++|...  +...+...+. ...++|++|+
T Consensus       260 ------------------------------~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~-~~~~~L~~L~  308 (344)
T d2ca6a1         260 ------------------------------AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLE  308 (344)
T ss_dssp             ------------------------------HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEE
T ss_pred             ------------------------------hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHH-ccCCCCCEEE
Confidence                                          0011111211 1356889999888211  1122333331 2467899999


Q ss_pred             EeCCC
Q 037920          344 IWNHP  348 (505)
Q Consensus       344 l~~~~  348 (505)
                      +++|.
T Consensus       309 l~~N~  313 (344)
T d2ca6a1         309 LNGNR  313 (344)
T ss_dssp             CTTSB
T ss_pred             CCCCc
Confidence            98876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.9e-09  Score=86.13  Aligned_cols=103  Identities=13%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             cEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEee
Q 037920           76 TSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLD  153 (505)
Q Consensus        76 ~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~  153 (505)
                      ..++.+++.+.+++... .+++|+.|.+  .+++.+..++...|.++++|+.|++++|.++.++ ..|..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l--~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYI--ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEEC--CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCccCcccccCccccCeeec--CCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34555665554444332 5666666666  3444566666655666666777777666666653 345666666666666


Q ss_pred             ccCCCC-cccccCCCCCcEEEccCCCCc
Q 037920          154 NCKLLD-ITVVRDLKKLEILCLRGSNIK  180 (505)
Q Consensus       154 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~  180 (505)
                      +|.+.. +..+....+|+.|++++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            666666 443333445666666666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.8e-09  Score=85.74  Aligned_cols=98  Identities=16%  Similarity=0.093  Sum_probs=43.8

Q ss_pred             EEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCE
Q 037920          171 ILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS  250 (505)
Q Consensus       171 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  250 (505)
                      .++.+++++...|..+..+++|++|++.+++.++.++...+..+++|+.|++++|.+..+       .+..|..+++|+.
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i-------~~~~f~~l~~L~~   84 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-------APDAFHFTPRLSR   84 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-------CTTGGGSCSCCCE
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCc-------ccccccccccccc
Confidence            344444444444444444444444444443344444443344445555555554444221       1233444455555


Q ss_pred             EEeecccCCCCCCCCC-CCCCcEEEE
Q 037920          251 LELHIKDVNTLPRGLF-FPKLQRYKI  275 (505)
Q Consensus       251 L~l~~~~~~~l~~~~~-~~~L~~L~~  275 (505)
                      |++++|++..+|.... ...|+.|++
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L  110 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVL  110 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred             eeccCCCCcccChhhhcccccccccc
Confidence            5555555554444432 233444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=9.6e-07  Score=72.93  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             cCCCCCCeeEeeccCCCCc----ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCC
Q 037920          142 GLLSNLRTLSLDNCKLLDI----TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDC  200 (505)
Q Consensus       142 ~~l~~L~~L~L~~~~l~~~----~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~  200 (505)
                      ..+++|++|++++|.++.+    ..+..+++|+.|++++|+++.++. ...+..+|+.|++.+|
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence            3455566666666655542    223345555555565555555432 1222334555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.2e-06  Score=67.45  Aligned_cols=82  Identities=24%  Similarity=0.205  Sum_probs=62.7

Q ss_pred             hhHHhCCCCccEEEEeCCcCccCc---ccccCCCCCCeeEeeccCCCCcccc--cCCCCCcEEEccCCCCcccc------
Q 037920          115 NKFFERMMQVRVINLTNINLMSLP---SSLGLLSNLRTLSLDNCKLLDITVV--RDLKKLEILCLRGSNIKMLP------  183 (505)
Q Consensus       115 ~~~~~~l~~L~~L~l~~~~~~~l~---~~l~~l~~L~~L~L~~~~l~~~~~i--~~l~~L~~L~l~~~~l~~lp------  183 (505)
                      ..++.++++|++|++++|.++.++   ..+..+++|++|++++|.+.+++.+  ....+|+.|++++|.+....      
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            344578999999999999998753   4567899999999999999983222  23457999999999886432      


Q ss_pred             --hhhhCCCCCCEEe
Q 037920          184 --IEVSELARLRLLG  196 (505)
Q Consensus       184 --~~i~~l~~L~~L~  196 (505)
                        ..+..+|+|+.|+
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              1245678888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.41  E-value=6.2e-05  Score=61.95  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=17.1

Q ss_pred             CCCCccEEEEeCC-cCcc-----CcccccCCCCCCeeEeeccCCC
Q 037920          120 RMMQVRVINLTNI-NLMS-----LPSSLGLLSNLRTLSLDNCKLL  158 (505)
Q Consensus       120 ~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~l~  158 (505)
                      +.+.|+.|+++++ .+..     +...+...++|++|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            4455555555543 2321     1223334444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.10  E-value=0.00024  Score=58.27  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=15.4

Q ss_pred             cCCCCCcEEEccCCCCc-----ccchhhhCCCCCCEEeeeC
Q 037920          164 RDLKKLEILCLRGSNIK-----MLPIEVSELARLRLLGLRD  199 (505)
Q Consensus       164 ~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~  199 (505)
                      ...++|+.|++++|.+.     .+...+...+.|++|++++
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeeh
Confidence            34444455555444443     1222333344455555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00035  Score=57.15  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=36.7

Q ss_pred             hCCCCccEEEEeCC-cCcc-----CcccccCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCc-----c
Q 037920          119 ERMMQVRVINLTNI-NLMS-----LPSSLGLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIK-----M  181 (505)
Q Consensus       119 ~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~-----~  181 (505)
                      .+.+.|+.|+++++ .++.     +...+...++|++|++++|.+..  .    ..+...+.++.+++.++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44555556655542 2321     22233445555555555555443  1    23334455555555555443     1


Q ss_pred             cchhhhCCCCCCEEeee
Q 037920          182 LPIEVSELARLRLLGLR  198 (505)
Q Consensus       182 lp~~i~~l~~L~~L~l~  198 (505)
                      +...+...++|+.+++.
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            22334444555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.37  E-value=0.0013  Score=53.49  Aligned_cols=113  Identities=15%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             ccCCCCCCeeEeecc-CCCC--c----ccccCCCCCcEEEccCCCCc-----ccchhhhCCCCCCEEeeeCCCCCCc---
Q 037920          141 LGLLSNLRTLSLDNC-KLLD--I----TVVRDLKKLEILCLRGSNIK-----MLPIEVSELARLRLLGLRDCRELEV---  205 (505)
Q Consensus       141 l~~l~~L~~L~L~~~-~l~~--~----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~---  205 (505)
                      ..+.+.|++|+++++ .++.  .    ..+...++|++|++++|.++     .+...+...++++.+++.+|.....   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            356789999999874 4655  2    45567889999999999876     3344566778999999988543222   


Q ss_pred             -cChhhhcCCCCccEEEeeC--CCCCCchhhhhccccccccCCCCcCEEEeeccc
Q 037920          206 -IPANVLSNLSHLEELYIGY--NSFGKWEVEMEGVKNASLHELKHLTSLELHIKD  257 (505)
Q Consensus       206 -~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  257 (505)
                       +... +...++|+.+++..  |.+.+..   ...+...+...+.|++|+++.+.
T Consensus        93 ~l~~~-l~~~~~L~~l~L~l~~n~i~~~~---~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEA-LQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHG-GGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHH-HHhCccccEEeeccCCCcCcHHH---HHHHHHHHHhCCCcCEEeCcCCC
Confidence             2222 56778888877753  3343211   22455567778889998887554