Citrus Sinensis ID: 037923

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCTP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHcccccccEEccccccccccHHHHHHHHHcccHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MAAIKSMVSLSTKAALLLLLIAVAVQTQmthsqsctseltnlnscapyvvpgvatttpssdccaalqsvdrdcfcntvriaarlpsqcnlpplsctp
Flexible Loop (DISEMBL)
MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAarlpsqcnlpplsctp
Low Complexity Region (SEG)
MAAIKSMVSLSTKaallllliavavQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCTP
Disordered region (IsUnstruct)
*********LSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQC*********
Disordered Region (DISOPRED)
************KAALLLLLIAVAVQ************LTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC**
Disordered Region (DISEMBL)
********SLSTKAALLLLLIAVAVQT**********ELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCTP
Disordered Region (DISPRO)
*******VSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
Q38737	99	Stamen-specific protein F	N/A	no	0.927	0.909	0.578	6e-23
O24356	100	Protein MEN-8 OS=Silene l	N/A	no	0.855	0.83	0.517	4e-20
Q43495	102	Protein 108 OS=Solanum ly	N/A	no	0.639	0.607	0.625	4e-17
Q40227	90	Protein LIM3 OS=Lilium lo	N/A	no	0.731	0.788	0.444	4e-13
Q00762	91	Tapetum-specific protein	no	no	0.896	0.956	0.426	6e-13
Q05772	96	Tapetum-specific protein	N/A	no	0.948	0.958	0.358	1e-12
Q43533	90	Protein LIM1 OS=Lilium lo	N/A	no	0.907	0.977	0.359	2e-10
Q43534	90	Protein LIM2 OS=Lilium lo	N/A	no	0.907	0.977	0.359	2e-10
Q40190	89	Protein M7 OS=Lilium henr	N/A	no	0.649	0.707	0.421	4e-10
O23810	95	Protein YY1 OS=Oryza sati	yes	no	0.865	0.884	0.384	1e-08

>sp|Q38737|FIL1_ANTMA Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 5/95 (5%)

Query: 1  MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSS 60
          MAA+KS+V L     +L +L+A +     + +Q+C++ L NLN+CAP+VV G ATT PSS
Sbjct: 1  MAAMKSIVPL----VMLTVLVAQSQLITQSEAQTCSASLANLNACAPFVVLGAATT-PSS 55

Query: 61 DCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          DCC ALQSVD +C CNT+RIA+R+P+QCNLPPLSC
Sbjct: 56 DCCTALQSVDHECLCNTLRIASRVPAQCNLPPLSC 90

Antirrhinum majus (taxid: 4151)

>sp|O24356|MEN8_SILLA Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 13 KAALLLLLIAVAVQTQMTHSQ----SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQS 68
          KA   + L+A+A+  Q+  S+     C S+L NLN CAPYVVPG   T PS +CCAAL  
Sbjct: 12 KATWAIFLVALAILVQLKGSEAQAGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALSG 71

Query: 69 VDRDCFCNTVRIAARLPSQCNLPPLSC 95
          V+ DC CNT+R+A++LPS CNL  L+C
Sbjct: 72 VNHDCMCNTLRVASQLPSSCNLAALNC 98

Silene latifolia (taxid: 37657)

>sp|Q43495|108_SOLLC Protein 108 OS=Solanum lycopersicum PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 54/64 (84%), Gaps = 2/64 (3%)

Query: 33  QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPP 92
           QSCT+ LT LN CAP++VPG  + T S++CC A+QS++ DC CNT+RIAA++P+QCNLPP
Sbjct: 39  QSCTASLTGLNVCAPFLVPG--SPTASTECCNAVQSINHDCMCNTMRIAAQIPAQCNLPP 96

Query: 93  LSCT 96
           LSC+
Sbjct: 97  LSCS 100

Solanum lycopersicum (taxid: 4081)

>sp|Q40227|LIM3_LILLO Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 24 AVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAAR 83
          A Q+++  +Q+C++ +  L SC PYV+PG    TPS+ CC+A+Q+V+  C C T+ I + 
Sbjct: 17 ATQSEIGLAQNCSAAIGGLMSCGPYVLPG-NQLTPSTQCCSAIQAVNHGCLCETINIISS 75

Query: 84 LPSQCNLPPLSC 95
          LP  C+LPP+SC
Sbjct: 76 LPGHCSLPPVSC 87

Lilium longiflorum (taxid: 4690)

>sp|Q00762|A9_ARATH Tapetum-specific protein A9 OS=Arabidopsis thaliana GN=A9 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 7  MVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAAL 66
          MVSL + AA+L+ +      T +  +Q C  EL+N+  CAP ++PG      +S+CCAAL
Sbjct: 1  MVSLKSLAAILVAMFLATGPTVL--AQQCRDELSNVQVCAPLLLPGAVNPAANSNCCAAL 58

Query: 67 QSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          Q+ ++DC CN +R A  L S CNLP   C
Sbjct: 59 QATNKDCLCNALRAATTLTSLCNLPSFDC 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q05772|A9_BRANA Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 4  IKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCC 63
          ++ + S +T   ++ L ++      M  +Q C   L+N+  CAP V+PG     P+S+CC
Sbjct: 1  MEFLKSFTTILFVMFLAMSALETVPMVRAQQCLDNLSNMQVCAPLVLPGAVNPAPNSNCC 60

Query: 64 AALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
           ALQ+ ++DC CN +R A    + CNLP L C
Sbjct: 61 IALQATNKDCICNALRAATTFTTTCNLPSLDC 92

Brassica napus (taxid: 3708)

>sp|Q43533|LIM1_LILLO Protein LIM1 OS=Lilium longiflorum GN=LIM1 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 7  MVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAAL 66
          M S+ + A  +L+++ +A  ++   SQ+C++ +  L +C PYV+PG     PS  CC+AL
Sbjct: 1  MASMKSLATAILVVLLLAALSREGRSQNCSAAIGELMTCGPYVLPG-NNGAPSEQCCSAL 59

Query: 67 QSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          ++V+  C C T+ I + LP  C+LP ++C
Sbjct: 60 RAVNHGCLCETINIISSLPDHCSLPAVNC 88

Lilium longiflorum (taxid: 4690)

>sp|Q43534|LIM2_LILLO Protein LIM2 OS=Lilium longiflorum GN=LIM2 PE=3 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 7  MVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAAL 66
          M S+ + A  +L+++ +A  ++   SQ+C++ +  L +C PYV+PG     PS  CC+AL
Sbjct: 1  MASMKSLATAILVVLLLAALSREGRSQNCSAAIGELMTCGPYVLPG-NNGAPSEQCCSAL 59

Query: 67 QSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          ++V+  C C T+ I + LP  C+LP ++C
Sbjct: 60 RAVNHGCLCETINIISSLPDHCSLPAVNC 88

Lilium longiflorum (taxid: 4690)

>sp|Q40190|M7_LILHE Protein M7 OS=Lilium henryi GN=M7 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 32 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLP 91
          SQ+C++ +  L +C PYV+PG +   PS  CC+AL++V+  C C T+ I + LP  C+LP
Sbjct: 25 SQNCSAAIGELMTCGPYVLPG-SNGAPSEQCCSALKAVNHGCLCETINIISSLPDHCSLP 83

Query: 92 PLSC 95
           ++C
Sbjct: 84 AVNC 87

Lilium henryi (taxid: 4689)

>sp|O23810|YY1_ORYSJ Protein YY1 OS=Oryza sativa subsp. japonica GN=Os09g0525500 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 7/91 (7%)

Query: 12 TKAALLLLLIAVAVQTQMTHSQ----SCTSELTNLNSCAPYVV---PGVATTTPSSDCCA 64
          T+ ALL++L+A A+   M  ++    SC ++LT L  CA   V   PG     P ++CC+
Sbjct: 4  TRTALLVVLVAGAMTMTMRGAEAQQPSCAAQLTQLAPCARVGVAPAPGQPLPAPPAECCS 63

Query: 65 ALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          AL +V  DC C T+ I   LP++C LP ++C
Sbjct: 64 ALGAVSHDCACGTLDIINSLPAKCGLPRVTC 94

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
224134715	94	predicted protein [Populus trichocarpa]	0.948	0.978	0.631	1e-21
6015153	99	RecName: Full=Stamen-specific protein FI	0.927	0.909	0.578	3e-21
359490355	100	PREDICTED: protein MEN-8 [Vitis vinifera	0.969	0.94	0.536	1e-20
255539535	97	MEN-8 protein precursor, putative [Ricin	0.979	0.979	0.6	1e-20
224122428	94	predicted protein [Populus trichocarpa]	0.731	0.755	0.661	2e-20
255539527	93	MEN-8 protein precursor, putative [Ricin	0.721	0.752	0.642	2e-19
6016542	100	RecName: Full=Protein MEN-8; Flags: Prec	0.855	0.83	0.517	2e-18
356529265	95	PREDICTED: stamen-specific protein FIL1-	0.762	0.778	0.586	4e-17
5902675	102	RecName: Full=Protein 108; Flags: Precur	0.639	0.607	0.625	2e-15
357444049	97	Tapetum-specific protein A9 [Medicago tr	0.742	0.742	0.547	6e-15

>gi|224134715|ref|XP_002321889.1| predicted protein [Populus trichocarpa] gi|222868885|gb|EEF06016.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 78/95 (82%), Gaps = 3/95 (3%)

Query: 1  MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSS 60
          MAA+KS   LS+  A+LLLL A+AVQTQ+ HSQ CTS+L NLN CAP+VVPG A T P++
Sbjct: 1  MAALKS---LSSPVAVLLLLTALAVQTQLAHSQQCTSQLNNLNVCAPFVVPGAANTNPNA 57

Query: 61 DCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          +CC AL++V  DC C+T++I++RLPSQCNLPPL+C
Sbjct: 58 ECCNALEAVQHDCLCSTLQISSRLPSQCNLPPLTC 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6015153|sp|Q38737.1|FIL1_ANTMA RecName: Full=Stamen-specific protein FIL1; Flags: Precursor gi|406309|emb|CAA40553.1| FIL1 [Antirrhinum majus]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 5/95 (5%)

Query: 1  MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSS 60
          MAA+KS+V L     +L +L+A +     + +Q+C++ L NLN+CAP+VV G ATT PSS
Sbjct: 1  MAAMKSIVPL----VMLTVLVAQSQLITQSEAQTCSASLANLNACAPFVVLGAATT-PSS 55

Query: 61 DCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          DCC ALQSVD +C CNT+RIA+R+P+QCNLPPLSC
Sbjct: 56 DCCTALQSVDHECLCNTLRIASRVPAQCNLPPLSC 90

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490355|ref|XP_002279400.2| PREDICTED: protein MEN-8 [Vitis vinifera]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 74/97 (76%), Gaps = 3/97 (3%)

Query: 1  MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQ--SCTSELTNLNSCAPYVVPGVATTTP 58
          MAA +S+ SL  +A LLL+ +A+  +TQM  SQ  +C+++L NL+ CAP+VVPG   +TP
Sbjct: 1  MAAARSLFSLRFRATLLLV-VALVARTQMAWSQPSACSTQLNNLSVCAPFVVPGAPDSTP 59

Query: 59 SSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          S+DCC ALQ++D  C C+T+RIA+RLPS CNL P++C
Sbjct: 60 SADCCTALQTIDDACMCSTLRIASRLPSHCNLTPVTC 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539535|ref|XP_002510832.1| MEN-8 protein precursor, putative [Ricinus communis] gi|223549947|gb|EEF51434.1| MEN-8 protein precursor, putative [Ricinus communis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 81/95 (85%)

Query: 1  MAAIKSMVSLSTKAALLLLLIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSS 60
          MAA++S+++LS++AALLLLL+A+A+QT + HSQ+C ++L +LN CAP+VVPG A T+P++
Sbjct: 1  MAALRSLIALSSQAALLLLLVALAMQTHLVHSQTCQNQLNSLNVCAPFVVPGAANTSPNA 60

Query: 61 DCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
          +CC AL+SV  DC CNT+RIA RLPS CNL P++C
Sbjct: 61 ECCNALESVQNDCICNTLRIAGRLPSLCNLSPINC 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122428|ref|XP_002318831.1| predicted protein [Populus trichocarpa] gi|222859504|gb|EEE97051.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 58/71 (81%)

Query: 25 VQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARL 84
          VQTQ+ HSQ CTS+L +LN CAP+VVPG   T PS+DCC AL +V  DC C+T++IAARL
Sbjct: 22 VQTQLAHSQICTSQLNSLNVCAPFVVPGAPNTNPSTDCCNALGAVQHDCLCSTLQIAARL 81

Query: 85 PSQCNLPPLSC 95
          PSQCNLPP++C
Sbjct: 82 PSQCNLPPITC 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539527|ref|XP_002510828.1| MEN-8 protein precursor, putative [Ricinus communis] gi|223549943|gb|EEF51430.1| MEN-8 protein precursor, putative [Ricinus communis]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 26 QTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLP 85
          QTQ   SQ+C S+L +LN CAP+VVPG   T P+++CC+ALQSV+ DC CNT+RIAARLP
Sbjct: 21 QTQEAQSQTCPSQLNSLNVCAPFVVPGATNTNPNAECCSALQSVEHDCLCNTLRIAARLP 80

Query: 86 SQCNLPPLSC 95
          SQCNL P++C
Sbjct: 81 SQCNLAPVNC 90

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6016542|sp|O24356.1|MEN8_SILLA RecName: Full=Protein MEN-8; Flags: Precursor gi|1628471|emb|CAA70033.1| Men-8 [Silene latifolia]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 13 KAALLLLLIAVAVQTQMTHSQ----SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQS 68
          KA   + L+A+A+  Q+  S+     C S+L NLN CAPYVVPG   T PS +CCAAL  
Sbjct: 12 KATWAIFLVALAILVQLKGSEAQAGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALSG 71

Query: 69 VDRDCFCNTVRIAARLPSQCNLPPLSC 95
          V+ DC CNT+R+A++LPS CNL  L+C
Sbjct: 72 VNHDCMCNTLRVASQLPSSCNLAALNC 98

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529265|ref|XP_003533216.1| PREDICTED: stamen-specific protein FIL1-like [Glycine max]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 22 AVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIA 81
          A   Q  M  S +CT++L+ LN CAP+VVPGV  T PSS CC ALQ+VDRDC C+T+RIA
Sbjct: 20 AHGTQIAMAQSSTCTTQLSELNVCAPFVVPGV-NTNPSSRCCNALQAVDRDCLCSTIRIA 78

Query: 82 ARLPSQCNLPPLSCT 96
          ++LPSQC +P L C+
Sbjct: 79 SQLPSQCQIPSLGCS 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5902675|sp|Q43495.1|108_SOLLC RecName: Full=Protein 108; Flags: Precursor gi|19152|emb|CAA78466.1| 108 protein [Solanum lycopersicum]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 54/64 (84%), Gaps = 2/64 (3%)

Query: 33  QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPP 92
           QSCT+ LT LN CAP++VPG  + T S++CC A+QS++ DC CNT+RIAA++P+QCNLPP
Sbjct: 39  QSCTASLTGLNVCAPFLVPG--SPTASTECCNAVQSINHDCMCNTMRIAAQIPAQCNLPP 96

Query: 93  LSCT 96
           LSC+
Sbjct: 97  LSCS 100

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444049|ref|XP_003592302.1| Tapetum-specific protein A9 [Medicago truncatula] gi|355481350|gb|AES62553.1| Tapetum-specific protein A9 [Medicago truncatula]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 24 AVQTQMTHSQS-CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAA 82
            + +M  +Q+ C ++L+NLN CAP+VVPG   T PS DCC ALQS + DC CNT+RIA+
Sbjct: 22 GTKMEMGEAQTTCPTQLSNLNVCAPFVVPGSPNTNPSPDCCTALQSTNPDCLCNTLRIAS 81

Query: 83 RLPSQCNLPPLSC 95
          +L SQCNLP   C
Sbjct: 82 QLTSQCNLPSFGC 94

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
TAIR|locus:2145106	96	AT5G52160 [Arabidopsis thalian	0.989	1.0	0.427	2.8e-18
TAIR|locus:2174018	95	AT5G62080 [Arabidopsis thalian	0.670	0.684	0.507	1.6e-15
TAIR|locus:2182910	91	AT5G07230 [Arabidopsis thalian	0.896	0.956	0.393	1.8e-14
UNIPROTKB|O23810	95	LOC_Os09g35700 "Protein YY1" [	0.639	0.652	0.415	1.4e-09
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.680	0.360	0.348	8.9e-06
TAIR|locus:2164411	182	XYP1 "xylogen protein 1" [Arab	0.680	0.362	0.275	0.00039
TAIR|locus:2076406	177	AT3G58550 [Arabidopsis thalian	0.463	0.254	0.307	0.00039
TAIR|locus:2035711	227	AT1G55260 [Arabidopsis thalian	0.577	0.246	0.346	0.0004
TAIR|locus:2050482	205	AT2G44290 [Arabidopsis thalian	0.463	0.219	0.36	0.00053

TAIR|locus:2145106 AT5G52160 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 41/96 (42%), Positives = 56/96 (58%)

Query:     1 MAAIKSMVSLSTKXXXXXXXXXXXXQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSS 60
             MAA     S+S                 +   QSC ++L+ LN C  +VVPG   T PS+
Sbjct:     1 MAASSKYSSMSFMKVAMMVALVLVVAATVVDGQSCNAQLSTLNVCGEFVVPGADRTNPSA 60

Query:    61 DCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCT 96
             +CC AL++V  +C CNT RIA+RLPS+CN+P LSC+
Sbjct:    61 ECCNALEAVPNECLCNTFRIASRLPSRCNIPTLSCS 96

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2174018 AT5G62080 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:    29 MTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQC 88
             +  +Q C ++L N+  CA  V+PG  +  P+S+CCAALQS +RDC CN +R A  LPS C
Sbjct:    27 VVQAQECGNDLANVQVCAAMVLPG--SGRPNSECCAALQSTNRDCLCNALRAATSLPSLC 84

Query:    89 NLPPLSC 95
             NLPP+ C
Sbjct:    85 NLPPVDC 91

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2182910 AT5G07230 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 35/89 (39%), Positives = 48/89 (53%)

Query:     7 MVSLSTKXXXXXXXXXXXXQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAAL 66
             MVSL +              T +  +Q C  EL+N+  CAP ++PG      +S+CCAAL
Sbjct:     1 MVSLKSLAAILVAMFLATGPTVL--AQQCRDELSNVQVCAPLLLPGAVNPAANSNCCAAL 58

Query:    67 QSVDRDCFCNTVRIAARLPSQCNLPPLSC 95
             Q+ ++DC CN +R A  L S CNLP   C
Sbjct:    59 QATNKDCLCNALRAATTLTSLCNLPSFDC 87

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

UNIPROTKB|O23810 LOC_Os09g35700 "Protein YY1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query:    34 SCTSELTNLNSCAPYVV---PGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNL 90
             SC ++LT L  CA   V   PG     P ++CC+AL +V  DC C T+ I   LP++C L
Sbjct:    30 SCAAQLTQLAPCARVGVAPAPGQPLPAPPAECCSALGAVSHDCACGTLDIINSLPAKCGL 89

Query:    91 PPLSC 95
             P ++C
Sbjct:    90 PRVTC 94

GO:0005548 "phospholipid transporter activity" evidence=ISS

GO:0006649 "phospholipid transfer to membrane" evidence=ISS

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 30/86 (34%), Positives = 41/86 (47%)

Query:    27 TQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRD---CFCNTVRI--- 80
             T+   S SC S LT L+ C  Y+     +TTPS  CC+ L SV +    C C+ V     
Sbjct:    22 TKAQPSSSCVSTLTTLSPCLSYITGN--STTPSQPCCSRLDSVIKSSPQCICSAVNSPIP 79

Query:    81 ----------AARLPSQCNL--PPLS 94
                       A +LP+ CN+  PPL+
Sbjct:    80 NIGLNINRTQALQLPNACNIQTPPLT 105

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2164411 XYP1 "xylogen protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 19/69 (27%), Positives = 30/69 (43%)

Query:    32 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSV---DRDCFCNTVRIAARLPSQC 88
             S  C++ + N+  C  +V  G     P   CC+ L++V   D  C C   + +A L    
Sbjct:    40 SVDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTL 99

Query:    89 NLPPLSCTP 97
             N+   S  P
Sbjct:   100 NITKASTLP 108

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2076406 AT3G58550 [Arabidopsis thaliana (taxid:3702)]

 Score = 71 (30.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query:    33 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQ-SVD----RDCFCNTVR 79
             + C   +++L SC P+V        P S CC+ L+  +D    R C C  V+
Sbjct:    36 KGCQDAMSDLYSCLPFVTN--KAKAPDSTCCSTLKVKIDKGQTRKCLCTLVK 85

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2035711 AT1G55260 [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00040, P = 0.00040
 Identities = 26/75 (34%), Positives = 35/75 (46%)

Query:    33 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRD---CFCNTVR---------- 79
             + CT++L  L++C PYV  G     P+ DCCA    V R    C C  VR          
Sbjct:    74 EECTNQLIELSTCIPYV--GGDAKAPTKDCCAGFGQVIRKSEKCVCILVRDKDDPQLGIK 131

Query:    80 ----IAARLPSQCNL 90
                 +AA LPS C++
Sbjct:   132 INATLAAHLPSACHI 146

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2050482 AT2G44290 [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query:    33 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSV---DRDCFCNTVR 79
             + CT++L  + +C PYV  G A + P+ DCC+ L+ V   D  C C  ++
Sbjct:    34 EECTAQLVGMATCLPYV-QGKAKS-PTPDCCSGLKQVINSDMKCLCMIIQ 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.123   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       97        85   0.00091  102 3  11 22  0.41    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  506 (54 KB)
  Total size of DFA:  98 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.68u 0.12s 8.80t   Elapsed:  00:00:01
  Total cpu time:  8.68u 0.12s 8.80t   Elapsed:  00:00:01
  Start:  Fri May 10 05:54:30 2013   End:  Fri May 10 05:54:31 2013

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23810	YY1_ORYSJ	No assigned EC number	0.3846	0.8659	0.8842	yes	no
O24356	MEN8_SILLA	No assigned EC number	0.5172	0.8556	0.83	N/A	no
Q38737	FIL1_ANTMA	No assigned EC number	0.5789	0.9278	0.9090	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007385001 SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (110 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	97
cd04660	73	cd04660, nsLTP_like, nsLTP_like: Non-specific lipi	3e-10
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	9e-05
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	0.001

>gnl|CDD|240018 cd04660, nsLTP_like, nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRI----------AARL 84
          C  +L  L  C PYV        PS +CCAAL+  D  C C               A  L
Sbjct: 1  CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYL 60

Query: 85 PSQCNLPPLS 94
          P++C LP   
Sbjct: 61 PAKCGLPLPP 70

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes. Length = 73

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 37.2 bits (86), Expect = 9e-05
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 14/70 (20%)

Query: 35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVR------------IAA 82
          C   L  L  CA Y+  G     PS  CC+ L+ +   C C  +R             AA
Sbjct: 1  CGQVLLKLAPCAGYLQGGCQV--PSQQCCSQLRQLQAQCRCTAIRAIVLGIEGINPQAAA 58

Query: 83 RLPSQCNLPP 92
           LPS C +  
Sbjct: 59 SLPSMCGVNV 68

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSV-DRDCFCNTVRI------------- 80
          C   L  L  C  Y+V G     PS  CC+ L+ +    C C  +R              
Sbjct: 1  CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGLNA 60

Query: 81 --AARLPSQCNLPP 92
            AA LPS C +PP
Sbjct: 61 QNAASLPSACGVPP 74

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.52
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.39
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.33
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.23
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.14
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.1
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.95
cd00261	110	AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and	97.29
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	89.9

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.52  E-value=5.5e-15  Score=89.87  Aligned_cols=59  Identities=39%  Similarity=0.812  Sum_probs=50.3

Q ss_pred             chhhccCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchh----------hHHHhhccccCCCCCC
Q 037923           35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNT----------VRIAARLPSQCNLPPL   93 (97)
Q Consensus        35 C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~----------~~~a~~LP~~Cgv~~~   93 (97)
                      |+.++..|.+|++|+++++++.+|+.+||+++++++..|+|.+          .++|++||++||++.+
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p   69 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP   69 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence            6677778899999999874445799999999999998999975          2689999999999855

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.39  E-value=2.7e-13  Score=81.34  Aligned_cols=52  Identities=33%  Similarity=0.835  Sum_probs=46.6

Q ss_pred             cCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh-----------HHHhhccccCCCCCCCC
Q 037923           40 TNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV-----------RIAARLPSQCNLPPLSC   95 (97)
Q Consensus        40 ~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~-----------~~a~~LP~~Cgv~~~~C   95 (97)
                      .+|.+|++|++++   .+||.+||+.|++.+ .|+|+|+           .+|+.||++||++.|+|
T Consensus         4 ~~L~~C~~ai~~~---~~Ps~~CC~~Lk~~~-~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P~C   66 (66)
T cd01959           4 TQLSPCLPAILGG---SPPSAACCAKLKEQQ-SCLCQYAKNPSLKQYVNSPNARKVLAACGVPYPNC   66 (66)
T ss_pred             hhcccCHHHHhCC---CCCCHHHHHHHhcCC-CCeeeeecCccHHhhcCcHHHHHHHHHcCCCCCCC
Confidence            4789999999976   689999999999966 8999873           47999999999999988

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.33  E-value=1.6e-13  Score=85.94  Aligned_cols=64  Identities=38%  Similarity=0.736  Sum_probs=39.5

Q ss_pred             hcccccCCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcC---CCCccchh------------hHHHhhccccCCCC
Q 037923           27 TQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSV---DRDCFCNT------------VRIAARLPSQCNLP   91 (97)
Q Consensus        27 ~~~~~~~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~---~~~ClC~~------------~~~a~~LP~~Cgv~   91 (97)
                      .++....+|.+++....+|+.|+.++   ..|+++||++++++   +..|+|++            .+++..||++||++
T Consensus        14 ~~~~~~~~c~~~l~~c~~~~~~~~~~---~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~   90 (96)
T PF14368_consen   14 PAAACCCSCANSLLPCCPCLCYVTGG---PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVP   90 (96)
T ss_dssp             ----BTTB-HCCCCHH--HHHHHCC--------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS
T ss_pred             cCCCCcchhHHHHhccccchhccCCC---CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCC
Confidence            34455567765433333448888854   79999999999996   78999975            26999999999998


Q ss_pred             CC
Q 037923           92 PL   93 (97)
Q Consensus        92 ~~   93 (97)
                      .+
T Consensus        91 ~~   92 (96)
T PF14368_consen   91 VP   92 (96)
T ss_dssp             -S
T ss_pred             CC
Confidence            55

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.23  E-value=4.1e-12  Score=79.52  Aligned_cols=57  Identities=33%  Similarity=0.713  Sum_probs=46.9

Q ss_pred             CchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC--------C--Cccchh----------hHHHhhccccCCCCC
Q 037923           34 SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD--------R--DCFCNT----------VRIAARLPSQCNLPP   92 (97)
Q Consensus        34 ~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~--------~--~ClC~~----------~~~a~~LP~~Cgv~~   92 (97)
                      +|.++...|.+|++|+++++  ..|+++||+++++++        .  .|+|..          .++|++||++||+..
T Consensus         2 ~C~~v~~~l~~C~~y~~g~~--~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~   78 (89)
T cd01960           2 SCGQVTSLLAPCLGYLTGGG--PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSI   78 (89)
T ss_pred             CHHHHHhhHHhHHHHHhCCC--CCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCC
Confidence            68999999999999999864  689999999999973        2  355521          379999999999984

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.14  E-value=2.3e-11  Score=71.34  Aligned_cols=47  Identities=45%  Similarity=0.987  Sum_probs=40.2

Q ss_pred             ccCchhhhcCCCCCCCCChhHHHHHhcC---CCCccchh-------------hHHHhhccccCCC
Q 037923           42 LNSCAPYVVPGVATTTPSSDCCAALQSV---DRDCFCNT-------------VRIAARLPSQCNL   90 (97)
Q Consensus        42 L~~C~~yv~~~~~~~~Ps~~CC~~l~~~---~~~ClC~~-------------~~~a~~LP~~Cgv   90 (97)
                      |.+|++|+++++  ..|+++||++++++   +..|+|.+             .++++.||++||+
T Consensus         1 L~~C~~y~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGA--TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCC--CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            579999999764  68999999999998   46899974             2689999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.10  E-value=8.9e-11  Score=69.96  Aligned_cols=59  Identities=36%  Similarity=0.817  Sum_probs=49.5

Q ss_pred             chhhccCccCchhhhcCCCCCCCCChhHHHHHhcC-CCCccchh---------------hHHHhhccccCCCCCC
Q 037923           35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSV-DRDCFCNT---------------VRIAARLPSQCNLPPL   93 (97)
Q Consensus        35 C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~-~~~ClC~~---------------~~~a~~LP~~Cgv~~~   93 (97)
                      |.+++..+.+|.+|++++.+...|+.+||++++.+ +..|+|.+               ..++.+||+.||+..+
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~   75 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPP   75 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCC
Confidence            56677777899999997533468999999999999 99999974               2578999999999976

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.95  E-value=2.5e-11  Score=75.46  Aligned_cols=53  Identities=38%  Similarity=0.892  Sum_probs=45.9

Q ss_pred             cCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh----------------------HHHhhccccCCCCCCC
Q 037923           40 TNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV----------------------RIAARLPSQCNLPPLS   94 (97)
Q Consensus        40 ~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~----------------------~~a~~LP~~Cgv~~~~   94 (97)
                      ..+.+|..|++++.  ..|+.+||++|++++..|+|..+                      .+|.+||+.||+.++.
T Consensus        13 ~~l~~c~~~~~~~~--~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~   87 (90)
T PF00234_consen   13 VRLSPCLPYLQGGC--QQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY   87 (90)
T ss_dssp             SHHHGGHHHHTTSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS
T ss_pred             ccccccHHHHhccc--ccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC
Confidence            45889999999763  47999999999999999999753                      4799999999999875

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins

Probab=97.29  E-value=0.00021  Score=45.81  Aligned_cols=57  Identities=33%  Similarity=0.731  Sum_probs=43.5

Q ss_pred             cCccCchhhhcCCC-C-----------CCCCChhHHHHHhcCCCCccchhh---------------------------HH
Q 037923           40 TNLNSCAPYVVPGV-A-----------TTTPSSDCCAALQSVDRDCFCNTV---------------------------RI   80 (97)
Q Consensus        40 ~~L~~C~~yv~~~~-~-----------~~~Ps~~CC~~l~~~~~~ClC~~~---------------------------~~   80 (97)
                      ..|.+|..|+.... +           .......||+.++.++..|.|..+                           ..
T Consensus        13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (110)
T cd00261          13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA   92 (110)
T ss_pred             ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHH
Confidence            35789999987431 0           012247799999999999999753                           37


Q ss_pred             HhhccccCCCCC-CCCC
Q 037923           81 AARLPSQCNLPP-LSCT   96 (97)
Q Consensus        81 a~~LP~~Cgv~~-~~C~   96 (97)
                      |.+||+.||+.+ +.|.
T Consensus        93 a~~Lp~~C~~~~~~~C~  109 (110)
T cd00261          93 AQNLPSMCNLYPPPYCP  109 (110)
T ss_pred             HHhhchhcCCCCCCCCC
Confidence            999999999997 7785

They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=89.90  E-value=0.32  Score=30.95  Aligned_cols=6  Identities=50%  Similarity=0.761  Sum_probs=4.0

Q ss_pred             Cccchhh
Q 037923            1 MAAIKSM    7 (97)
Q Consensus         1 ma~~~~~    7 (97)
                      ||+ |++
T Consensus         1 MaS-K~~    6 (95)
T PF07172_consen    1 MAS-KAF    6 (95)
T ss_pred             Cch-hHH
Confidence            884 764

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.52
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.4
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.4
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.33
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.33
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.31
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.28
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.21
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.2
1s6d_A	103	Albumin 8; all helix, folded LEAF, right-handed su	98.19
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	97.91
2lvf_A	114	2S albumin; allergen, copper binding, hydrophobic	97.82
1psy_A	125	2S albumin, RICC3; albumin SEED protein, SEED stor	97.73
1sm7_A	109	Recombinant IB pronapin; all alpha-helix, right-ha	97.59
1w2q_A	127	Conglutin, ARA H 6; allergen, allergene; NMR {Arac	97.44
1pnb_B	75	Napin BNIB; napin IA and IB, albumin SEED protein,	97.4
1b1u_A	122	Protein (alpha-amylase/trypsin inhibitor RATI); bi	97.32
1bea_A	127	Bifunctional amylase/serine protease inhibitor; am	97.23
2ds2_B	72	Sweet protein mabinlin-2 chain B; plant protein, S	97.17
1hss_A	124	0.19 alpha-amylase inhibitor; cereal inhibitor, an	97.12

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.52  E-value=1.5e-15  Score=92.40  Aligned_cols=63  Identities=38%  Similarity=0.779  Sum_probs=53.9

Q ss_pred             cCCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh------------HHHhhccccCCCCCC-CC
Q 037923           32 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV------------RIAARLPSQCNLPPL-SC   95 (97)
Q Consensus        32 ~~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~------------~~a~~LP~~Cgv~~~-~C   95 (97)
                      ..+|++++.+|.+|++|++++ +...|+.+||++||+.|..|+|.++            ++|++||++||++.| +|
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~-~~~~Ps~~CC~~lk~~~~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv~~p~~C   77 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKE-NPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC   77 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSS-SCCCCCHHHHHHHTTCCHHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTCSCCCCC
T ss_pred             cchHHhHHHhHhhCHHHHcCC-CCCCCCHHHHHHHHhcCcCCcCcccCCcchhhcCcCHHHHHHHHHHcCCCCCCCC
Confidence            468999999999999999974 2368999999999988889999753            579999999999954 77

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.40  E-value=3.7e-14  Score=84.28  Aligned_cols=52  Identities=31%  Similarity=0.777  Sum_probs=45.8

Q ss_pred             cCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh-----------HHHhhccccCCCCCCCC
Q 037923           40 TNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV-----------RIAARLPSQCNLPPLSC   95 (97)
Q Consensus        40 ~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~-----------~~a~~LP~~Cgv~~~~C   95 (97)
                      .+|.+|++|++++   .+|+.+||++||+. ..|+|.++           ++|++||++||++.|+|
T Consensus         5 ~~L~pC~~~v~~~---~~Ps~~CC~~lk~~-~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P~C   67 (67)
T 1n89_A            5 SQLAVCASAILSG---AKPSGECCGNLRAQ-QGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC   67 (67)
T ss_dssp             STTHHHHHHHTTC---CCCCHHHHHHHHHH-SSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCSCC
T ss_pred             hhcccCHHHHcCC---CCCCHHHHHhhCCC-CCCCCccccCcccccccCHHHHHHHHHHcCCCCCCC
Confidence            4789999999976   57999999999985 89999653           57999999999998887

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.40  E-value=2.1e-14  Score=85.81  Aligned_cols=53  Identities=26%  Similarity=0.715  Sum_probs=46.5

Q ss_pred             cCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh-----------HHHhhccccCCCCCCCCC
Q 037923           40 TNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV-----------RIAARLPSQCNLPPLSCT   96 (97)
Q Consensus        40 ~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~-----------~~a~~LP~~Cgv~~~~C~   96 (97)
                      .+|.+|++|++++   .+||.+||++||+. ..|+|.++           ++|++||++||++.|+|+
T Consensus         6 ~~L~pC~~~v~~~---~~Ps~~CC~~lk~~-~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P~C~   69 (69)
T 1l6h_A            6 GQLTVCTGAIAGG---ARPTAACCSSLRAQ-QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTCH   69 (69)
T ss_dssp             TTHHHHHHHHTTC---CSTTHHHHHHHHHH-HHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSCCCC
T ss_pred             hhcccCHHHHcCC---CCCCHHHHHhhCCC-CCCCCccccCcccccccCHHHHHHHHHHcCCCCCCCC
Confidence            4789999999976   57999999999985 78999653           479999999999999995

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.33  E-value=6.7e-14  Score=87.70  Aligned_cols=57  Identities=30%  Similarity=0.693  Sum_probs=49.2

Q ss_pred             CCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC----------CCccchh----------hHHHhhccccCCCCC
Q 037923           33 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD----------RDCFCNT----------VRIAARLPSQCNLPP   92 (97)
Q Consensus        33 ~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~----------~~ClC~~----------~~~a~~LP~~Cgv~~   92 (97)
                      .+|+++...|.||++|++++   ..|+++||+++++++          ..|+|.+          .++|++||++||++.
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~---~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~   78 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGG---GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSI   78 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHC---SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCC
T ss_pred             CChHHHHHhccCcHHHHcCC---CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCC
Confidence            57999999999999999987   458889999999964          4799974          368999999999983

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.33  E-value=5.8e-14  Score=88.16  Aligned_cols=58  Identities=28%  Similarity=0.639  Sum_probs=50.0

Q ss_pred             CCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC----------CCccchh----------hHHHhhccccCCCCC
Q 037923           33 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD----------RDCFCNT----------VRIAARLPSQCNLPP   92 (97)
Q Consensus        33 ~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~----------~~ClC~~----------~~~a~~LP~~Cgv~~   92 (97)
                      .+|+++...|.||++|+++++  ..|+.+||+++++++          ..|+|..          .++|++||++||++.
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~--~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~   79 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQG--SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSI   79 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSC--CSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCC
T ss_pred             CChHHHHHhccCcHHHHcCCC--CCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCC
Confidence            579999999999999999864  578899999999984          3699963          379999999999973

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.31  E-value=7.4e-14  Score=87.86  Aligned_cols=59  Identities=31%  Similarity=0.682  Sum_probs=48.9

Q ss_pred             cCCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC--------CCccchh------------hHHHhhccccCCCC
Q 037923           32 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD--------RDCFCNT------------VRIAARLPSQCNLP   91 (97)
Q Consensus        32 ~~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~--------~~ClC~~------------~~~a~~LP~~Cgv~   91 (97)
                      +.+|++++..|.||++|++++   ..|++.||+++++++        .+|+|.-            .++|.+||++||+.
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~---~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~   77 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGG---PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVN   77 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTS---SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHhHHHHHcCC---CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCC
Confidence            368999999999999999986   569999999999983        2466642            37999999999997


Q ss_pred             CC
Q 037923           92 PL   93 (97)
Q Consensus        92 ~~   93 (97)
                      .|
T Consensus        78 ~p   79 (93)
T 2ljo_A           78 IP   79 (93)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.28  E-value=1.7e-13  Score=85.57  Aligned_cols=56  Identities=25%  Similarity=0.625  Sum_probs=48.1

Q ss_pred             CchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC----------CCccchh----------hHHHhhccccCCCCC
Q 037923           34 SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD----------RDCFCNT----------VRIAARLPSQCNLPP   92 (97)
Q Consensus        34 ~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~----------~~ClC~~----------~~~a~~LP~~Cgv~~   92 (97)
                      +|+++..+|.||++|+++++   .|+.+||+++++++          ..|+|..          .++|++||++||++.
T Consensus         2 ~C~~v~~~L~pCl~y~~~~~---~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~   77 (90)
T 1bwo_A            2 DCGHVDSLVRPCLSYVQGGP---GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNL   77 (90)
T ss_dssp             CHHHHHHHHGGGHHHHTTCS---CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCC
T ss_pred             CHHHHHHhhcccHHHHcCCC---CCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCC
Confidence            68999999999999999873   39999999999974          3799952          378999999999983

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.21  E-value=5.7e-13  Score=83.35  Aligned_cols=56  Identities=27%  Similarity=0.573  Sum_probs=47.7

Q ss_pred             CCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC----------CCccchh----------hHHHhhccccCCCCC
Q 037923           33 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD----------RDCFCNT----------VRIAARLPSQCNLPP   92 (97)
Q Consensus        33 ~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~----------~~ClC~~----------~~~a~~LP~~Cgv~~   92 (97)
                      .+|+++...|.||++|+++++  . |+ +||+++++++          ..|+|..          .++|++||++||++.
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~--~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~   77 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTG--P-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNI   77 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSS--C-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCC
T ss_pred             CChHHHHHhccCcHHHHcCCC--C-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCC
Confidence            579999999999999999864  4 88 9999999973          3799952          379999999999973

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.20  E-value=5.8e-13  Score=83.26  Aligned_cols=56  Identities=23%  Similarity=0.562  Sum_probs=47.7

Q ss_pred             CchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC----------CCccchh----------hHHHhhccccCCCCC
Q 037923           34 SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD----------RDCFCNT----------VRIAARLPSQCNLPP   92 (97)
Q Consensus        34 ~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~----------~~ClC~~----------~~~a~~LP~~Cgv~~   92 (97)
                      +|+++...|.||++|+++++   .|+.+||+++++++          ..|+|..          .++|++||++||++.
T Consensus         2 ~C~~v~~~L~pCl~yv~~~~---~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~   77 (91)
T 1siy_A            2 TCGQVQGNLAQCIGFLQKGG---VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNI   77 (91)
T ss_dssp             CTTTTHHHHHHHHHHHTSCS---CCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHhccCcHHHHhCCC---CCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCC
Confidence            69999999999999999873   49999999999972          2699952          378999999999973

>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3

Probab=98.19  E-value=1.2e-06  Score=55.62  Aligned_cols=67  Identities=27%  Similarity=0.734  Sum_probs=52.7

Q ss_pred             cccCCchhhc--cC-ccCchhhhcCCC----C------CCCCChhHHHHHhcCCCCccchhh-----------------H
Q 037923           30 THSQSCTSEL--TN-LNSCAPYVVPGV----A------TTTPSSDCCAALQSVDRDCFCNTV-----------------R   79 (97)
Q Consensus        30 ~~~~~C~~~~--~~-L~~C~~yv~~~~----~------~~~Ps~~CC~~l~~~~~~ClC~~~-----------------~   79 (97)
                      .....|...+  .+ |.+|..||....    +      ......+||+.|+.++..|.|..+                 .
T Consensus         6 ~~~q~C~qq~q~~q~L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~~~~CrC~al~~~~Q~q~~g~q~~~~~q   85 (103)
T 1s6d_A            6 RTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMS   85 (103)
T ss_dssp             CCSSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHSCGGGSSHHHHHHTTSTTCSSTHHHHHH
T ss_pred             CCCcccHHHHHhChhHHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhcCcccCcHHHHHHHHHHhcchhHHHHHH
Confidence            3456798887  35 899999998531    1      023468999999999999999864                 4


Q ss_pred             HHhhccccCCCCCCCCC
Q 037923           80 IAARLPSQCNLPPLSCT   96 (97)
Q Consensus        80 ~a~~LP~~Cgv~~~~C~   96 (97)
                      +|.+||..||+++.+|.
T Consensus        86 ~A~~LP~~C~i~p~~C~  102 (103)
T 1s6d_A           86 MAHNLPIECNLMSQPCQ  102 (103)
T ss_dssp             HHHHHHHHTTSSSSCSC
T ss_pred             HHHhcHHhcCCCcccCC
Confidence            79999999999987784

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=97.91  E-value=9.5e-07  Score=67.82  Aligned_cols=65  Identities=29%  Similarity=0.788  Sum_probs=47.6

Q ss_pred             cCCchhhc--cCccCchhhhcCCC--C---------------------------CCCCChhHHHHHhcCC--CCccchhh
Q 037923           32 SQSCTSEL--TNLNSCAPYVVPGV--A---------------------------TTTPSSDCCAALQSVD--RDCFCNTV   78 (97)
Q Consensus        32 ~~~C~~~~--~~L~~C~~yv~~~~--~---------------------------~~~Ps~~CC~~l~~~~--~~ClC~~~   78 (97)
                      ...|...+  .+|.+|+.|+...-  +                           ..+--.+||+.|+.+.  ++|+|..+
T Consensus       370 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~l~~~~~~~~c~c~~~  449 (500)
T 3ob4_A          370 ARRCQSQLERANLRPCEQHLMQKIQRDEDSYERDPYSPSQDPYSPSPYDRRGAGSSQHQERCCNELNEFENNQRCMCEAL  449 (500)
T ss_dssp             SCCHHHHHHHCCCHHHHHHHHHHHHTTSCC--CCCSSTTSCC---------------CHHHHHHHHGGGTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccCChHHHHHHHHhhccccccccCCCCcCCCCCCCCccccCCCccchHHHHHHHHHHhCCcccccccHHH
Confidence            44576664  66889999997510  0                           0011178999999996  79999753


Q ss_pred             ---------------------HHHhhccccCCCC-CCCCC
Q 037923           79 ---------------------RIAARLPSQCNLP-PLSCT   96 (97)
Q Consensus        79 ---------------------~~a~~LP~~Cgv~-~~~C~   96 (97)
                                           .+|+.||..||+. |.+|.
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~  489 (500)
T 3ob4_A          450 QQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCD  489 (500)
T ss_dssp             HHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCC
Confidence                                 4699999999999 56785

>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}

Probab=97.82  E-value=2.6e-06  Score=54.99  Aligned_cols=65  Identities=32%  Similarity=0.831  Sum_probs=48.3

Q ss_pred             cCCchhhc---cCccCchhhhcC----CCCCCC-------CChhHHHHHhcCCCCccchhh-------------------
Q 037923           32 SQSCTSEL---TNLNSCAPYVVP----GVATTT-------PSSDCCAALQSVDRDCFCNTV-------------------   78 (97)
Q Consensus        32 ~~~C~~~~---~~L~~C~~yv~~----~~~~~~-------Ps~~CC~~l~~~~~~ClC~~~-------------------   78 (97)
                      ...|...+   .+|.+|..||..    +.....       --.+||+.|+.+++.|.|..+                   
T Consensus         5 ~q~C~~q~q~~~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv~~~CrC~aL~~~v~~~~qq~~~~~~~~~   84 (114)
T 2lvf_A            5 QEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQM   84 (114)
T ss_dssp             HHHHHHHHHHCTHHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCCCSHHH
T ss_pred             hHhhHHHHHHhHhHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHCCcCccCHHHHHHHHHHHHHHhhhhhhHH
Confidence            34677664   458899999974    111111       125699999999999999853                   


Q ss_pred             ----HHHhhccccCCCCCCCCC
Q 037923           79 ----RIAARLPSQCNLPPLSCT   96 (97)
Q Consensus        79 ----~~a~~LP~~Cgv~~~~C~   96 (97)
                          .+|.+||+.||+.+..|.
T Consensus        85 ~~~~q~A~~LP~~C~i~p~~C~  106 (114)
T 2lvf_A           85 RRMMRLAENIPSRCNLSPMRCP  106 (114)
T ss_dssp             HHHHHHHHHHHHHHCCCCSCCT
T ss_pred             HHHHHHHHhChHhcCCCcccCC
Confidence                489999999999987785

>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3

Probab=97.73  E-value=1.4e-05  Score=52.40  Aligned_cols=61  Identities=26%  Similarity=0.686  Sum_probs=47.0

Q ss_pred             cccCCchhhc--cCccCchhhhcCCCC-C-------C---------C--CChhHHHHHhcCCCCccchhh----------
Q 037923           30 THSQSCTSEL--TNLNSCAPYVVPGVA-T-------T---------T--PSSDCCAALQSVDRDCFCNTV----------   78 (97)
Q Consensus        30 ~~~~~C~~~~--~~L~~C~~yv~~~~~-~-------~---------~--Ps~~CC~~l~~~~~~ClC~~~----------   78 (97)
                      .....|...+  ..|.+|..||..... .       .         .  .-.+||+.|+.+++.|.|..+          
T Consensus        13 ~~~q~C~~e~qq~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~e~~~qe~~~~qqCC~qL~~~~~~C~C~aL~~~v~~~~qQ   92 (125)
T 1psy_A           13 SSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQ   92 (125)
T ss_dssp             SSSSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHhhHHHHHHHHHHHHhcccCcchhhhcchhhcccccHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHH
Confidence            3455799887  579999999986310 0       0         1  247899999999999999764          


Q ss_pred             ------------HHHhhccccCCC
Q 037923           79 ------------RIAARLPSQCNL   90 (97)
Q Consensus        79 ------------~~a~~LP~~Cgv   90 (97)
                                  .+|.+||+.||+
T Consensus        93 gq~~gqq~~~~~q~A~~LP~~C~i  116 (125)
T 1psy_A           93 GQLHGEESERVAQRAGEIVSSCGV  116 (125)
T ss_dssp             TTCCTTCSHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHHHHHHHHHHhhHHHcCC
Confidence                        479999999999

>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}

Probab=97.59  E-value=8.4e-06  Score=52.01  Aligned_cols=63  Identities=30%  Similarity=0.799  Sum_probs=45.4

Q ss_pred             Cchhhcc---CccCchhhhcCC---CCC-CC-------C--ChhHHHHHhcCCCCccchhhH------------------
Q 037923           34 SCTSELT---NLNSCAPYVVPG---VAT-TT-------P--SSDCCAALQSVDRDCFCNTVR------------------   79 (97)
Q Consensus        34 ~C~~~~~---~L~~C~~yv~~~---~~~-~~-------P--s~~CC~~l~~~~~~ClC~~~~------------------   79 (97)
                      .|...+.   .|.+|..|+...   .+. ..       +  ..+||+.|+.++..|.|..+.                  
T Consensus         4 ~C~~q~q~~q~L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v~~qCrC~al~~~v~~~~~qgq~~~~~~~   83 (109)
T 1sm7_A            4 KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQST   83 (109)
T ss_dssp             HHHTTHHHHCCCSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTTCHHHHTTTTHHHHHTSSCSSCCCTTHHH
T ss_pred             hhHHHHHcCccHHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhcCccCCCHHHHHHHHHHHHhcccchHHHH
Confidence            4555553   388999999742   110 11       2  468999999999999998652                  


Q ss_pred             ----HHhhccccCCCCCC-CCC
Q 037923           80 ----IAARLPSQCNLPPL-SCT   96 (97)
Q Consensus        80 ----~a~~LP~~Cgv~~~-~C~   96 (97)
                          +|..||+.||+.++ .|.
T Consensus        84 ~~~~~a~~LP~~Cnl~~~~~C~  105 (109)
T 1sm7_A           84 RIYQIAKNLPNVCNMKQIGTCP  105 (109)
T ss_dssp             HHHHTTSSHHHHSCCCSSCSSC
T ss_pred             HHHHHHHhCHHhcCCCCCCCCC
Confidence                47889999999854 574

>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea}

Probab=97.44  E-value=3.6e-05  Score=50.51  Aligned_cols=67  Identities=28%  Similarity=0.743  Sum_probs=49.6

Q ss_pred             cccCCchhhc--cCccCchhhhcCCCCCC---------------CCChhHHHHHhcC--CCCccchhh------------
Q 037923           30 THSQSCTSEL--TNLNSCAPYVVPGVATT---------------TPSSDCCAALQSV--DRDCFCNTV------------   78 (97)
Q Consensus        30 ~~~~~C~~~~--~~L~~C~~yv~~~~~~~---------------~Ps~~CC~~l~~~--~~~ClC~~~------------   78 (97)
                      .....|...+  ..|.+|..||.......               ..-..||+.|+.+  ++.|.|..+            
T Consensus        11 ~~~qqC~qq~q~~qL~~Cq~yl~q~~~~~~~~~~~~~~~~~~~e~~lqqCC~qL~q~~~~~qCrCeaL~q~~Q~qq~q~~   90 (127)
T 1w2q_A           11 GDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQ   90 (127)
T ss_dssp             STTCCHHHHHTTCCCHHHHHHHHTGGGSSSSSCSCCCTTSCCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHSCTTTT
T ss_pred             CcccccHHHHHHhhHHHHHHHHHHHHhhccCCccchhhcccccHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhhhh
Confidence            3456798876  46899999998521000               1137899999999  899999753            


Q ss_pred             ---------HHHhhccccCCC-CCCCCC
Q 037923           79 ---------RIAARLPSQCNL-PPLSCT   96 (97)
Q Consensus        79 ---------~~a~~LP~~Cgv-~~~~C~   96 (97)
                               .+|..||..||+ .+..|.
T Consensus        91 gqq~~~~~~q~A~~LP~~C~i~~~~~C~  118 (127)
T 1w2q_A           91 DRQMVQQFKRELMSLPQQCNFRAPQRCD  118 (127)
T ss_dssp             TSTTHHHHHHHHHHHHHHHTCCCSSCCS
T ss_pred             hHHHHHHHHHHHHHhHHhcCCCCCCcCC
Confidence                     368999999999 555674

>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3

Probab=97.40  E-value=9.3e-05  Score=44.31  Aligned_cols=41  Identities=34%  Similarity=0.737  Sum_probs=34.2

Q ss_pred             CCCChhHHHHHhcCCCCccchhh----------------------HHHhhccccCCCC-CCCCC
Q 037923           56 TTPSSDCCAALQSVDRDCFCNTV----------------------RIAARLPSQCNLP-PLSCT   96 (97)
Q Consensus        56 ~~Ps~~CC~~l~~~~~~ClC~~~----------------------~~a~~LP~~Cgv~-~~~C~   96 (97)
                      .....+||+.|+.+++.|.|..+                      .+|..||..||+. +..|.
T Consensus         8 ~~~~qqCC~qL~~~~~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~~~~C~   71 (75)
T 1pnb_B            8 PWLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP   71 (75)
T ss_dssp             CSCTHHHHHHHHTSCGGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTTTCCCC
T ss_pred             hHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCCCCCCC
Confidence            35678999999999999999753                      4789999999998 45674

>1b1u_A Protein (alpha-amylase/trypsin inhibitor RATI); bifunctional, hydrolase inhibitor; 2.20A {Eleusine coracana} SCOP: a.52.1.2 PDB: 1bip_A 1tmq_B

Probab=97.32  E-value=4.2e-05  Score=49.96  Aligned_cols=54  Identities=31%  Similarity=0.692  Sum_probs=40.7

Q ss_pred             cCccCchhhhcCC---CCCCCC----ChhHHHHHhcCCCCccchhh-------------------------------HHH
Q 037923           40 TNLNSCAPYVVPG---VATTTP----SSDCCAALQSVDRDCFCNTV-------------------------------RIA   81 (97)
Q Consensus        40 ~~L~~C~~yv~~~---~~~~~P----s~~CC~~l~~~~~~ClC~~~-------------------------------~~a   81 (97)
                      +.|.+|.+||...   .....|    ..+||++|++++..|+|..+                               ..|
T Consensus        15 ~~L~~Cr~Yv~~q~C~~g~~~p~~~~~~~CC~QL~~i~~~CRC~ALr~m~~~~~~~~g~~~g~~~~~~pgC~re~~~~~A   94 (122)
T 1b1u_A           15 NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFA   94 (122)
T ss_dssp             STTTHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCEECTTSCEECCCCCCCTTCCHHHHHHHG
T ss_pred             ccchHHHHHHHHhcccCCCCCchHHHHHHHHHHHHhCCccccHHHHHHHHHhhhhhhcccccccchhccCCcHHHHHHHH
Confidence            4578999999642   111223    46799999999999999742                               268


Q ss_pred             hhc--cccCCCCCC
Q 037923           82 ARL--PSQCNLPPL   93 (97)
Q Consensus        82 ~~L--P~~Cgv~~~   93 (97)
                      .+|  |+.||++++
T Consensus        95 ~~Lv~P~~Cnl~~~  108 (122)
T 1b1u_A           95 PKLVTEVECNLATI  108 (122)
T ss_dssp             GGTTSTTTTCCCCT
T ss_pred             HhcCCcccCCCCCC
Confidence            899  999999865

>1bea_A Bifunctional amylase/serine protease inhibitor; amylase/protease bifunctional inhibitor; 1.95A {Zea mays} SCOP: a.52.1.2 PDB: 1bfa_A

Probab=97.23  E-value=0.00012  Score=48.05  Aligned_cols=54  Identities=30%  Similarity=0.634  Sum_probs=40.3

Q ss_pred             cCccCchhhhcCC---CCCCC----CChhHHHHHhcCCCCccchhh--------------------------------HH
Q 037923           40 TNLNSCAPYVVPG---VATTT----PSSDCCAALQSVDRDCFCNTV--------------------------------RI   80 (97)
Q Consensus        40 ~~L~~C~~yv~~~---~~~~~----Ps~~CC~~l~~~~~~ClC~~~--------------------------------~~   80 (97)
                      +.|.+|.+||...   .....    +...||++|++++..|+|..+                                ..
T Consensus        15 ~pL~~CR~Yv~~q~C~~g~~~p~e~~~~~CC~QL~~i~~~CRC~ALr~m~~~~~~~~~~~~~~G~~~~~pgC~re~~~~~   94 (127)
T 1bea_A           15 NPLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADIPAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGF   94 (127)
T ss_dssp             SCCHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHTSCGGGHHHHHHHHHHCBCCCSSSCCCBCCCCCBTTBCHHHHHHH
T ss_pred             ccchHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhcCcccchHHHHHHHHhhhcccccccccccccccCCCcHHHHHHH
Confidence            4578999999632   11122    345699999999999999742                                25


Q ss_pred             Hhhc--cccCCCCCC
Q 037923           81 AARL--PSQCNLPPL   93 (97)
Q Consensus        81 a~~L--P~~Cgv~~~   93 (97)
                      |.+|  |..||++++
T Consensus        95 A~~Lv~P~~Cnl~~~  109 (127)
T 1bea_A           95 AATLVTEAECNLATI  109 (127)
T ss_dssp             HTTTTSTTTTCCCCT
T ss_pred             HHhcCCcccCCCCCC
Confidence            8889  999999876

>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai}

Probab=97.17  E-value=0.00017  Score=42.91  Aligned_cols=40  Identities=38%  Similarity=0.899  Sum_probs=33.2

Q ss_pred             CCChhHHHHHhcCCCCccchhh-----------------------HHHhhccccCCCCC-CCCC
Q 037923           57 TPSSDCCAALQSVDRDCFCNTV-----------------------RIAARLPSQCNLPP-LSCT   96 (97)
Q Consensus        57 ~Ps~~CC~~l~~~~~~ClC~~~-----------------------~~a~~LP~~Cgv~~-~~C~   96 (97)
                      .....||+.|+.+++.|.|..+                       .+|..||..||+.+ ..|.
T Consensus         5 ~~~qqCC~eL~~~~~~CrC~aL~~~~~~~~qqgq~~~~qq~~~~~q~a~~LP~~C~l~~~~~C~   68 (72)
T 2ds2_B            5 PALRQCCNQLRQVDRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPNIGACP   68 (72)
T ss_dssp             CHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCTTCCCCC
T ss_pred             hHHHHHHHHHHhcCccccCHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhHHhcCCCCCCcCC
Confidence            3457899999999999999753                       47999999999984 5674

>1hss_A 0.19 alpha-amylase inhibitor; cereal inhibitor, animal amylase; 2.06A {Triticum aestivum} SCOP: a.52.1.2

Probab=97.12  E-value=4.5e-05  Score=49.92  Aligned_cols=54  Identities=26%  Similarity=0.592  Sum_probs=39.9

Q ss_pred             cCccCchhhhcCCCC-CC---CCChhHHHHHhcCCCCccchhh--------------------------------HHHhh
Q 037923           40 TNLNSCAPYVVPGVA-TT---TPSSDCCAALQSVDRDCFCNTV--------------------------------RIAAR   83 (97)
Q Consensus        40 ~~L~~C~~yv~~~~~-~~---~Ps~~CC~~l~~~~~~ClC~~~--------------------------------~~a~~   83 (97)
                      +.|.+|..||...-. ..   ....+||++|++++..|+|..+                                ..|.+
T Consensus        15 ~pL~~Cr~Yv~~~C~g~~~p~~~~~~CC~QL~~i~~~CRC~ALr~m~~~~~~~~g~~~g~~~~e~~pgCrre~~~~~A~~   94 (124)
T 1hss_A           15 PALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAQEGQAGTGAFPRCRREVVKLTAAS   94 (124)
T ss_dssp             SCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHC---------CCSTTCCHHHHHHHHTT
T ss_pred             CcchHHHHHHHHHccCCCCcHHHHHHHHHHHHhcCcccchHHHHHHHHhhhhhhhhhccccchhhccCCcHHHHHHHHHh
Confidence            457899999964210 12   2357899999999999999753                                15788


Q ss_pred             ccccCCCCCC
Q 037923           84 LPSQCNLPPL   93 (97)
Q Consensus        84 LP~~Cgv~~~   93 (97)
                      ||..||++++
T Consensus        95 LP~~Cnl~~~  104 (124)
T 1hss_A           95 ITAVCRLPIV  104 (124)
T ss_dssp             HHHHTTCCEE
T ss_pred             chhhcCCCCC
Confidence            9999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d1s6da_	103	a.52.1.3 (A:) Methionine-rich 2S protein (albumin	0.002

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]} Length = 103

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

 Score = 32.9 bits (75), Expect = 0.002
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 27/90 (30%)

Query: 33  QSCTSELTNLNSCAPYV---VPGVATTTPS-------SDCCAALQSVDRDCFCNTVRIAA 82
                E   LN C  Y+   +   +  +P          CC  L+++D  C C  + +  
Sbjct: 12  YQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMML 71

Query: 83  R-----------------LPSQCNLPPLSC 95
                             LP +CNL    C
Sbjct: 72  NEPMWIRMRDQVMSMAHNLPIECNLMSQPC 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.29
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.26
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.97
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.95
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	98.55
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	98.41
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	98.09
d1hssa_	120	0.19 alpha-amylase inhibitor {Wheat (Triticum aest	97.33
d1tmqb_	117	Trypsin/alpha-amylase inhibitor RBI {Eleusine cora	96.69
d1beaa_	116	Hageman factor/amylase inhibitor {Maize (Zea mays)	94.96

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.29  E-value=9.6e-14  Score=85.70  Aligned_cols=59  Identities=29%  Similarity=0.642  Sum_probs=48.8

Q ss_pred             cCCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC--------CCccchh------------hHHHhhccccCCCC
Q 037923           32 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD--------RDCFCNT------------VRIAARLPSQCNLP   91 (97)
Q Consensus        32 ~~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~--------~~ClC~~------------~~~a~~LP~~Cgv~   91 (97)
                      +.+|++++..|.||++|+++++  ..|++.||+++++++        .+|+|.-            .+|+.+||++||+.
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~--~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~   78 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQG--SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS   78 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCS--SSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHhhhhHHHHhCCC--CCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence            3689999999999999999874  579999999999874        2466642            37999999999986


Q ss_pred             C
Q 037923           92 P   92 (97)
Q Consensus        92 ~   92 (97)
                      -
T Consensus        79 l   79 (93)
T d1fk5a_          79 I   79 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.26  E-value=1.5e-13  Score=84.50  Aligned_cols=56  Identities=32%  Similarity=0.777  Sum_probs=47.5

Q ss_pred             CchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC--------CCccchh------------hHHHhhccccCCCCC
Q 037923           34 SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD--------RDCFCNT------------VRIAARLPSQCNLPP   92 (97)
Q Consensus        34 ~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~--------~~ClC~~------------~~~a~~LP~~Cgv~~   92 (97)
                      +|++++..|.||++|++++   ..|++.||+++++++        .+|+|.-            .+||.+||++||+..
T Consensus         2 ~C~~v~~~l~pCl~Yl~g~---~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~   77 (91)
T d1mida_           2 NCGQVDSKMKPCLTYVQGG---PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNV   77 (91)
T ss_dssp             CHHHHHHHHGGGHHHHTTC---SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHhhHHHHcCC---CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCC
Confidence            7999999999999999986   579999999999984        2477753            379999999999974

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.97  E-value=6.2e-11  Score=68.82  Aligned_cols=52  Identities=31%  Similarity=0.777  Sum_probs=46.7

Q ss_pred             cCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh-----------HHHhhccccCCCCCCCC
Q 037923           40 TNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV-----------RIAARLPSQCNLPPLSC   95 (97)
Q Consensus        40 ~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~-----------~~a~~LP~~Cgv~~~~C   95 (97)
                      ..|.+|++.++++   .+||.+||+.+++. ..|+|+|+           .+|+.+-+.||++.|+|
T Consensus         5 ~~L~~C~~Ai~~g---~~PS~~CC~kLkeQ-~~ClC~Y~kdP~~~~yv~spnarkv~~aCgvp~P~C   67 (67)
T d1tuka1           5 SQLAVCASAILSG---AKPSGECCGNLRAQ-QGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC   67 (67)
T ss_dssp             GGGGGGHHHHHHC---CCCCHHHHHHHHHH-GGGHHHHTTCTTTHHHHTSHHHHHHHHHTTCCCCCC
T ss_pred             hhccccHHHHhcC---CCCcHHHHHHHHhc-CCccceecCCccHHHHcCCHHHHHHHHhcCCCCCCC
Confidence            3799999999987   68999999999995 68999874           37999999999999998

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.95  E-value=3.4e-11  Score=70.32  Aligned_cols=57  Identities=26%  Similarity=0.744  Sum_probs=48.7

Q ss_pred             CchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh-----------HHHhhccccCCCCCCCCC
Q 037923           34 SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV-----------RIAARLPSQCNLPPLSCT   96 (97)
Q Consensus        34 ~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~-----------~~a~~LP~~Cgv~~~~C~   96 (97)
                      .|+.  ..|.+|++.++++   .+||.+||+.+|+. ..|+|+|+           .+|+.+-..|||+.|+|-
T Consensus         2 ~C~p--~~L~~C~~ai~~g---~~PS~~CC~kLkeQ-~~ClC~Y~k~P~~~~yv~spnarkv~~aCgvp~P~C~   69 (69)
T d1l6ha_           2 GCNA--GQLTVCTGAIAGG---ARPTAACCSSLRAQ-QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTCH   69 (69)
T ss_dssp             CSTT--TTHHHHHHHHTTC---CSTTHHHHHHHHHH-HHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSCCCC
T ss_pred             CCCh--hhccccHHHHhCC---CCCcHHHHHHHHhc-CCccceeccCccHHHHcCCHHHHHHHHhcCCCCCCCC
Confidence            3555  3799999999987   68999999999994 68999974           279999999999999983

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=98.55  E-value=2.5e-08  Score=62.06  Aligned_cols=67  Identities=27%  Similarity=0.717  Sum_probs=52.8

Q ss_pred             cccCCchhhc---cCccCchhhhcCCC-------C---CCCCChhHHHHHhcCCCCccchhh-----------------H
Q 037923           30 THSQSCTSEL---TNLNSCAPYVVPGV-------A---TTTPSSDCCAALQSVDRDCFCNTV-----------------R   79 (97)
Q Consensus        30 ~~~~~C~~~~---~~L~~C~~yv~~~~-------~---~~~Ps~~CC~~l~~~~~~ClC~~~-----------------~   79 (97)
                      .....|...+   ..|.+|..||....       +   ...--.+||+.|+.+++.|.|..+                 .
T Consensus         6 ~~~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~~~~CrC~~L~~avq~q~~q~~~~~~~q   85 (103)
T d1s6da_           6 RTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMS   85 (103)
T ss_dssp             CCSSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHSCGGGSSHHHHHHTTSTTCSSTHHHHHH
T ss_pred             CccccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHhHHHHHHHHH
Confidence            3456788766   57999999997521       1   123458899999999999999763                 5


Q ss_pred             HHhhccccCCCCCCCCC
Q 037923           80 IAARLPSQCNLPPLSCT   96 (97)
Q Consensus        80 ~a~~LP~~Cgv~~~~C~   96 (97)
                      .|.+||+.||+.|..|.
T Consensus        86 ~Ak~LPs~C~i~P~~C~  102 (103)
T d1s6da_          86 MAHNLPIECNLMSQPCQ  102 (103)
T ss_dssp             HHHHHHHHTTSSSSCSC
T ss_pred             HHHhChHhcCCCCccCC
Confidence            89999999999998884

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=98.09  E-value=6.8e-07  Score=57.11  Aligned_cols=65  Identities=26%  Similarity=0.637  Sum_probs=48.9

Q ss_pred             ccccCCchhhc--cCccCchhhhcCCCC---CC---------------CC-ChhHHHHHhcCCCCccchhh---------
Q 037923           29 MTHSQSCTSEL--TNLNSCAPYVVPGVA---TT---------------TP-SSDCCAALQSVDRDCFCNTV---------   78 (97)
Q Consensus        29 ~~~~~~C~~~~--~~L~~C~~yv~~~~~---~~---------------~P-s~~CC~~l~~~~~~ClC~~~---------   78 (97)
                      ......|...+  .+|.+|..||....-   ..               .+ -.+||+.|+.+++.|.|..+         
T Consensus        12 ~~~~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~~~~CrC~~l~~~v~~~~q   91 (125)
T d1psya_          12 GSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQ   91 (125)
T ss_dssp             CSSSSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred             CCccccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHH
Confidence            34556788764  579999999985310   00               11 15799999999999999753         


Q ss_pred             -------------HHHhhccccCCCCCC
Q 037923           79 -------------RIAARLPSQCNLPPL   93 (97)
Q Consensus        79 -------------~~a~~LP~~Cgv~~~   93 (97)
                                   .+|.+||+.||+.+.
T Consensus        92 q~~~~~~~~~~~~q~Ak~LPs~C~i~~~  119 (125)
T d1psya_          92 QGQLHGEESERVAQRAGEIVSSCGVRCM  119 (125)
T ss_dssp             HTTCCTTCSHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhChhhcCCcch
Confidence                         589999999999865

>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Proteinase/alpha-amylase inhibitors
domain: 0.19 alpha-amylase inhibitor
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.33  E-value=3.1e-05  Score=48.84  Aligned_cols=54  Identities=26%  Similarity=0.586  Sum_probs=41.0

Q ss_pred             cCccCchhhhcCCC----CCCCCChhHHHHHhcCCCCccchhh--------------------------------HHHhh
Q 037923           40 TNLNSCAPYVVPGV----ATTTPSSDCCAALQSVDRDCFCNTV--------------------------------RIAAR   83 (97)
Q Consensus        40 ~~L~~C~~yv~~~~----~~~~Ps~~CC~~l~~~~~~ClC~~~--------------------------------~~a~~   83 (97)
                      +-|..|..||....    .+..+...||++|.+++..|+|..+                                ..|..
T Consensus        11 ~pL~~CR~yv~~q~~G~~~~~~~k~~CC~eLa~i~~~CRCeALr~~~~~~~~e~G~~~g~~~~e~~PgC~re~~~~~aa~   90 (120)
T d1hssa_          11 PALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAQEGQAGTGAFPRCRREVVKLTAAS   90 (120)
T ss_dssp             SCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHCCC---------STTCCHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCcccchHHHHHHHhhhccccCCCCCccccccCCCCChHHHHHHHhh
Confidence            45778999997521    1223458899999999999999752                                37889


Q ss_pred             ccccCCCCCC
Q 037923           84 LPSQCNLPPL   93 (97)
Q Consensus        84 LP~~Cgv~~~   93 (97)
                      ||..||++.+
T Consensus        91 Lpa~CNl~tv  100 (120)
T d1hssa_          91 ITAVCRLPIV  100 (120)
T ss_dssp             HHHHTTCCEE
T ss_pred             cccccCCCcc
Confidence            9999999853

>d1tmqb_ a.52.1.2 (B:) Trypsin/alpha-amylase inhibitor RBI {Eleusine coracana, seeds [TaxId: 4511]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Proteinase/alpha-amylase inhibitors
domain: Trypsin/alpha-amylase inhibitor RBI
species: Eleusine coracana, seeds [TaxId: 4511]

Probab=96.69  E-value=0.00029  Score=44.07  Aligned_cols=44  Identities=30%  Similarity=0.683  Sum_probs=30.1

Q ss_pred             Cchhhc----cCccCchhhhcCC---CCCC----CCChhHHHHHhcCCCCccchh
Q 037923           34 SCTSEL----TNLNSCAPYVVPG---VATT----TPSSDCCAALQSVDRDCFCNT   77 (97)
Q Consensus        34 ~C~~~~----~~L~~C~~yv~~~---~~~~----~Ps~~CC~~l~~~~~~ClC~~   77 (97)
                      .|....    +-|.+|.+||...   ....    .+..+||++|.+++..|+|..
T Consensus         5 ~C~Pg~~~p~~pL~~CR~Yv~~q~~g~g~~~~~~~~~~~CC~qL~~i~~~CRC~A   59 (117)
T d1tmqb_           5 SCIPGMAIPHNPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEA   59 (117)
T ss_dssp             GCSBTTTBCSSTTTTHHHHHHHHHHSCSCSSCHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             cCCCCcccCCCccHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCcccchHH
Confidence            455543    3478899999642   1111    233559999999999999975

>d1beaa_ a.52.1.2 (A:) Hageman factor/amylase inhibitor {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Proteinase/alpha-amylase inhibitors
domain: Hageman factor/amylase inhibitor
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.96  E-value=0.0076  Score=37.32  Aligned_cols=53  Identities=30%  Similarity=0.587  Sum_probs=37.9

Q ss_pred             cCccCchhhhcCC----CCCCC---CChhHHHHHhcCCCCccchhh--------------------------------HH
Q 037923           40 TNLNSCAPYVVPG----VATTT---PSSDCCAALQSVDRDCFCNTV--------------------------------RI   80 (97)
Q Consensus        40 ~~L~~C~~yv~~~----~~~~~---Ps~~CC~~l~~~~~~ClC~~~--------------------------------~~   80 (97)
                      +-|..|..||...    ++...   ....||+++.+++..|+|+.+                                ..
T Consensus        11 ~pLp~CR~yV~~q~cg~g~~~~~~~~k~~CCreLa~I~~~CRC~AL~~mm~~~~~~~g~~~~~~~~~~~PgC~re~~~~~   90 (116)
T d1beaa_          11 NPLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADIPAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGF   90 (116)
T ss_dssp             SCCHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHTSCGGGHHHHHHHHHHCBCCCSSSCCCBCCCCCBTTBCHHHHHHH
T ss_pred             CCchhHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCcccchHHHHHHHcccccccccccccCccccCCCCCHHHHHHH
Confidence            3466799999631    11121   235699999999999999642                                36


Q ss_pred             Hhhc--cccCCCCC
Q 037923           81 AARL--PSQCNLPP   92 (97)
Q Consensus        81 a~~L--P~~Cgv~~   92 (97)
                      |..|  |..||++.
T Consensus        91 Aa~Lv~p~~CNL~t  104 (116)
T d1beaa_          91 AATLVTEAECNLAT  104 (116)
T ss_dssp             HTTTTSTTTTCCCC
T ss_pred             HHHcCCccccCCcc
Confidence            7788  89999984