Citrus Sinensis ID: 037927

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQCC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccHHHHEEEEEcHHHHHHHHccHHHHHHHHHHHccccccEEEEcccccccccccccEEEcccccccccccccccccccccccccEEEEEEEEcEEEEEEcccccEEEEccccccEEEccccccccccccEEEEEEEEccccccEEEEEEEEEEccccccccccccccccccEEEEEEcccccEEEEcccccccccccccccccccccEEEEcccEEEEEEcccccccEEEEEEEccccEEEEEcccccccccccEEEEEEccEEEEEEEccEEEEEEEEEccccccEEEEEEEccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEcccEEcccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEcccccEEEEccccccEEEEccccccccccEEEEEEEccccccccEEEEEEEEccccccccEEcccccccccEEEEEEEccccccEEEEcccccccccccccccccccccEEEccEEEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEEccEEEEEEEcccEEEEEEEcccccEEEEEEEEEccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLslisdpgfALLQYkrtarnsppkillskrslyskdsplrsfdcsttslhdqraltrlhfpfirpdsmvRFIGSCHGLICLALDNYREIFiwnpstgaytklpadpdatydydivkygfgydsstngyKVMFYFQEIDhkrednlqddnsrcidiQGIVFTAKTNSWKKVEHSFGSIHCccearnlqgrpmgtlVNESLHWLtnnqcefgmfgitafdlatdkfsrvpkpdfdyahQAMGLGVVGGRLCLLALGANVELWVMKEygvkcswqkhyclgisisaddygNWAALILSQCC
Flexible Loop (DISEMBL)
MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRtarnsppkillskrslyskdsplRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQCC
Low Complexity Region (SEG)
MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMglgvvggrlcllalgaNVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQCC
Disordered region (IsUnstruct)
******DVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRT************************FDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQ**
Disordered Region (DISOPRED)
*SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQCC
Disordered Region (DISEMBL)
MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQCC
Disordered Region (DISPRO)
*SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSL*DQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQCC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQCC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q9LIR8	364	F-box/kelch-repeat protei	yes	no	0.826	0.747	0.288	2e-26
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.823	0.634	0.277	6e-25
Q9SU30	413	F-box protein CPR30 OS=Ar	no	no	0.939	0.748	0.294	7e-24
Q9SFC7	417	F-box protein At3g07870 O	no	no	0.884	0.697	0.272	4e-23
Q9LU24	360	Putative F-box protein At	no	no	0.811	0.741	0.267	6e-19
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.872	0.713	0.268	1e-18
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.790	0.724	0.276	4e-15
Q9FVV8	392	Putative F-box protein At	no	no	0.860	0.721	0.257	5e-15
Q9LUI8	372	Putative F-box/kelch-repe	no	no	0.863	0.763	0.247	2e-14
Q9C800	441	Putative F-box protein At	no	no	0.759	0.566	0.256	3e-14

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 43/315 (13%)

Query: 3   NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQY------KRTARNSPPKI 56
           NLP +++ E+L RLPVKSL RFKC C  W SLIS+  FAL         K T     P  
Sbjct: 13  NLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYG 72

Query: 57  LLSKRSLYSKDSPLRSFDCSTT---SLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLA 113
           +++    + K   + S   ++T   S HD   L R ++         + +G+CHGL+C  
Sbjct: 73  VITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYY---------QVVGTCHGLVCFH 123

Query: 114 LDNYREIFIWNPSTGAYTKL-PADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKR 172
           +D  + +++WNP+     +L  +D + + D  +V YGFGYD S + YKV+   Q+  H+ 
Sbjct: 124 VDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQ-RHQ- 181

Query: 173 EDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHW 232
                      + I+  +++ +   W+        +    ++R+      G  +N +L+ 
Sbjct: 182 -----------VKIETKIYSTRQKLWRSNTSFPSGVVVADKSRS------GIYINGTLN- 223

Query: 233 LTNNQCEFGMFGITAFDLATDKFSRVPKPD-FDYAHQAMGLGVVGGRLCLLAL--GANVE 289
                     + I ++D++ D+F  +P P         M LG + G L ++    GAN +
Sbjct: 224 -WAATSSSSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANAD 282

Query: 290 LWVMKEYGVKCSWQK 304
           +WVMKE+G   SW K
Sbjct: 283 VWVMKEFGEVYSWSK 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 165/349 (47%), Gaps = 78/349 (22%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFA-----LLQYKRTARNSPPKILL 58
           LP +++ E+L RLP KS+ RF+C  K + +L SDPGFA     L+    + R+   K+++
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 59  SKRSLYS----------------------KDSP------LRSFDCSTTSLHDQRALTRLH 90
           S  +LYS                      KD P      +R++        D+R + +L+
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNY-VGDHLYDDRRVMLKLN 154

Query: 91  FPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPAD---PDATYDYDIVK 147
               R +  V  +GS +GL+C++      +F++NP+TG   +LP +       Y+ D  +
Sbjct: 155 AKSYRRN-WVEIVGSSNGLVCIS-PGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQ 212

Query: 148 -YGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKV----- 201
            YGFG+D  T+ YK++    ++    ED L             V++ K +SW+++     
Sbjct: 213 TYGFGFDGLTDDYKLV----KLVATSEDILD----------ASVYSLKADSWRRICNLNY 258

Query: 202 EHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKP 261
           EH+ GS               G   N ++HW+   +       + AFD+ T++F  +P P
Sbjct: 259 EHNDGSYTS------------GVHFNGAIHWVFT-ESRHNQRVVVAFDIQTEEFREMPVP 305

Query: 262 DF--DYAHQAMG--LGVVGGRLCLLALGANV--ELWVMKEYGVKCSWQK 304
           D   D +H+     +G + GRLC++    +V  ++WVM EYG   SW +
Sbjct: 306 DEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSR 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 154/340 (45%), Gaps = 31/340 (9%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
           M+ +P D++ ++  RLP K+L+R +   K    LI+DP F      R  +     ++L +
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREI 120
            +L      L S D  +   H          P  R      F GS +GLI L+ ++  ++
Sbjct: 61  GALRLYSVDLDSLDSVSDVEH----------PMKRGGPTEVF-GSSNGLIGLS-NSPTDL 108

Query: 121 FIWNPSTGAYTKLPAD----PDATYDYDIVKYGFGYDSSTNGYKVMFYFQ-EIDHKREDN 175
            ++NPST    +LP      PD +     V YG GYDS ++ YKV+   Q +ID      
Sbjct: 109 AVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDS----- 163

Query: 176 LQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCC--CEARNLQGRPMGTLVNESLHWL 233
            +D+       +  VF+ K NSWK++E    SI          L  R  G L   SLHW+
Sbjct: 164 -EDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV 222

Query: 234 TNNQCEFGMFG-ITAFDLATDKFSRVPKPDF---DYAHQAMGLGVVGGRLCLLAL--GAN 287
              +     F  I  FDLA ++F  V  P+          M +GV+ G LCL+     + 
Sbjct: 223 LPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSY 282

Query: 288 VELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQ 327
           V++W+MKEY V+ SW K + +    S   +     L+ S+
Sbjct: 283 VDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSK 322

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 32/323 (9%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
           + +LP+D++ ++ SRLP+ S+ R    C+ W S+++  G          +   P +LL  
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTK---PCLLL-- 79

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRF--IGSCHGLICLALDNYR 118
                 DSP+R+         +++ +    F      SM  F  +GSC+GL+CL+   Y 
Sbjct: 80  ----HCDSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYN 135

Query: 119 E-IFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVM--FYFQEID------ 169
           + ++++NP T    +LP   +  +D ++V +GFG+   T  YKV+   YF+         
Sbjct: 136 DSLYLYNPFTTNSLELPECSNKYHDQELV-FGFGFHEMTKEYKVLKIVYFRGSSSNNNGI 194

Query: 170 HKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNES 229
           ++    +Q   S   ++Q +  ++KT        S G             R    LVN  
Sbjct: 195 YRGRGRIQYKQS---EVQILTLSSKTTDQSLSWRSLGK-----APYKFVKRSSEALVNGR 246

Query: 230 LHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQA-MGLGVVGGRLCLLALG--A 286
           LH++T  +         +FDL  ++F  +PKPD    ++    L  + G LC +  G   
Sbjct: 247 LHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYG 306

Query: 287 NVELWVMKEYGVKCSWQKHYCLG 309
            +++WVMK YGVK SW K Y +G
Sbjct: 307 KLDIWVMKTYGVKESWGKEYSIG 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 54/321 (16%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSL 63
           LP+++ IE+L RL +K L RF+C CK W  LI+DPGF       T R+  P   +   S 
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFT-----ETYRDMSPAKFV---SF 56

Query: 64  YSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMV---RFIGSCHGLICLALDNYREI 120
           Y K+  +   +     + +     +L FP     SM+     +  C G +C+ L N+  +
Sbjct: 57  YDKNFYMLDVEGKHPVITN-----KLDFPL--DQSMIDESTCVLHCDGTLCVTLKNH-TL 108

Query: 121 FIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDN 180
            +WNP +  +  +P +P    D +I+  GFGYD   + YKV+ +   +D           
Sbjct: 109 MVWNPFSKQFKIVP-NPGIYQDSNIL--GFGYDPVHDDYKVVTFIDRLDVS--------- 156

Query: 181 SRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF 240
                    VF  +T SW +      S+       + + R  GT +++ L+W+       
Sbjct: 157 ------TAHVFEFRTGSWGE------SLRISYPDWHYRDR-RGTFLDQYLYWIAYRSSAD 203

Query: 241 GMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLAL---GANVELWVMKEYG 297
               I  F+L+T ++ ++P P ++    +  LGV   +LC+         + + VM++ G
Sbjct: 204 RF--ILCFNLSTHEYRKLPLPVYNQGVTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTG 261

Query: 298 VKCSWQKHYCLGIS--ISADD 316
              SW K   L +S  IS  D
Sbjct: 262 ---SWSKIISLSMSSFISVQD 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 138/316 (43%), Gaps = 29/316 (9%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
           M+  P D++ E+  RL   +L++ +   K   SLI  P F     +R        ++L +
Sbjct: 1   MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLR 60

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREI 120
                +          T  L     ++ +  P ++        GS +G+I L  ++  ++
Sbjct: 61  GPRLLR----------TVELDSPENVSDIPHP-LQAGGFTEVFGSFNGVIGLC-NSPVDL 108

Query: 121 FIWNPSTGAYTKLPADPDATYDYDIVK----YGFGYDSSTNGYKVMFYFQEIDHKREDNL 176
            I+NPST    +LP +P    + DI +    YG GYDS  + +KV+   Q         L
Sbjct: 109 AIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQ-------CKL 161

Query: 177 QDDNSRC-IDIQGIVFTAKTNSWKKV--EHSFGSIHCCCEARNLQGRPMGTLVNESLHW- 232
           ++   +    ++  VF+ K NSWK+V     F  +        L  R  G +VN  LHW 
Sbjct: 162 KEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWI 221

Query: 233 LTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGRLCLLALG--ANVEL 290
           L   Q       I  +DLA+D    +  P   Y    M +GV+ G +CL+     ++V++
Sbjct: 222 LPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCLMCYDEYSHVDV 281

Query: 291 WVMKEYGVKCSWQKHY 306
           WV+KEY    SW K Y
Sbjct: 282 WVLKEYEDYKSWTKLY 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 135/304 (44%), Gaps = 44/304 (14%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSL 63
            PD+V++++L+RLPVKSL RFK  CK W  L SD  F  L  + + +    ++L+++ S 
Sbjct: 9   FPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKE---QLLVAEVS- 64

Query: 64  YSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREI-FI 122
              DS       S   + + R ++ L   F+R    VR   S +GL+C +    + + ++
Sbjct: 65  ---DSS------SLICVDNLRGVSELSLDFVR--DRVRIRVSSNGLLCCSSIPEKGVYYV 113

Query: 123 WNPSTGAYTKLPADPDATY-----DYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQ 177
            NPST  Y KLP   +        D +    G   D S N + V+       H+      
Sbjct: 114 CNPSTREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGY---HRSFGQRP 170

Query: 178 DDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQ 237
           D +  C     +VF +++N W+K    F S+   C   ++    +   VN  LHWL +  
Sbjct: 171 DGSFIC-----LVFDSESNKWRK----FVSVLEECSFTHMSKNQV-VFVNGMLHWLMSGL 220

Query: 238 CEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVV----GGRLCLLALG-ANVELWV 292
           C      I A D+  D + ++  PD        G  V      G L ++ L    +++W 
Sbjct: 221 CY-----ILALDVEHDVWRKISLPDEIRIGNGGGNRVYLLESDGFLSVIQLSDVWMKIWK 275

Query: 293 MKEY 296
           M EY
Sbjct: 276 MSEY 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVV8|FB87_ARATH Putative F-box protein At1g71320 OS=Arabidopsis thaliana GN=At1g71320 PE=4 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 146/353 (41%), Gaps = 70/353 (19%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSL 63
           +PDD+   +   LP+KSL RFK   K+W S+I    F+  +  RT   +P    L     
Sbjct: 14  IPDDIAEGIFHHLPIKSLARFKVLSKKWTSMIESTYFSHKRLIRTGLPTPNMKFLHISQH 73

Query: 64  YSKD-----SPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLAL-DNY 117
           ++ +     S   +F   T S  DQ    R  F   + +  ++ +GSC GL+ L + D++
Sbjct: 74  FTANFVEEYSNSITFLLETFSRDDQN--NRKTFDESQ-NKTIQVLGSCDGLVLLRIHDDF 130

Query: 118 REIFIWNPSTGAYTKLPAD-----------------------PDATYDYDI-VKY----- 148
           R I++ NP+T  + KL  +                         +  DYDI VK      
Sbjct: 131 RSIYLINPTTKEHMKLSPEFMQWPFTLSYLTPAMANKPWRQLSQSVLDYDISVKRMPSLA 190

Query: 149 GFGYDSSTNGYKVMFYFQ--EI-DHK-REDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHS 204
           GFG D     YKV+  +   EI DH+ +   L  DN    D+                  
Sbjct: 191 GFGKDIVKKSYKVVLIYTRYEIHDHEFKAKVLSLDNGEQRDV-----------------G 233

Query: 205 FGSIHCC--CEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPD 262
           F  IH C  C+ +           N SL WLT  +     + + A DL T++F  +  P+
Sbjct: 234 FYDIHHCIFCDEQT------SVYANGSLFWLTLKKLSQTSYQLLAIDLHTEEFRWILLPE 287

Query: 263 FDYAHQA-MGLGVVGGRLCL--LALGANVELWVMKEYGVKCSWQKHYCLGISI 312
            D  +   + +  +  RLCL  +   +N+ +W + +      W+K Y + I +
Sbjct: 288 CDTKYATNIEMWNLNERLCLSDVLESSNLVVWSLHQEYPTEKWEKIYSIKIDV 340

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUI8|FBK65_ARATH Putative F-box/kelch-repeat protein At3g22730 OS=Arabidopsis thaliana GN=At3g22730 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 143/323 (44%), Gaps = 39/323 (12%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
           MS+L  D++ E+LSR+P  SL R +  CK W +L  +PGF   Q+ +  + S   +L+ K
Sbjct: 3   MSDLSLDLVEEILSRVPATSLKRLRSTCKLWNALFKNPGFTKKQFLKAPKES--LVLMLK 60

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREI 120
              YS    + +   S  S+  + AL   ++P    +  +     C GL+     +YR I
Sbjct: 61  E--YSVCPMIANLSVSAPSIEFKGALNLKNYPPYSEEVDIHEACHCDGLLLCTTMDYR-I 117

Query: 121 FIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNG--YKVMFYFQEIDHKREDNLQD 178
            +WNP  G  T+    P   Y     ++  GY+ +  G  YK++        +  D    
Sbjct: 118 VVWNPCLGE-TRWIRWPKNIYS----RFALGYEKNKYGRIYKIL--------RCWDRHNS 164

Query: 179 DNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQC 238
              R  + +  ++   ++SW+ ++      H            +G     + +WL +++ 
Sbjct: 165 PTGRVDEFE--IYEFSSDSWRVLDLVALDCHIASH--------IGVSFKGNTYWLASDKK 214

Query: 239 E-FGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGGR-LCLLALGAN----VELWV 292
           + +G+  +  FD  T++F+R+  P      + M L VVGG+ L LL+   +    +E+WV
Sbjct: 215 DKYGL--LLCFDFTTERFTRLCLPPSQDVSK-MALSVVGGKQLSLLSQSDSTSKIMEMWV 271

Query: 293 MKEYGVKCSWQKHYCLGISISAD 315
                    W K + + I I  D
Sbjct: 272 TNIIEDVLMWSKSFTVDIPIRGD 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 131/323 (40%), Gaps = 73/323 (22%)

Query: 3   NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLIS------------DPGFALLQYKRTAR 50
            LPD ++ E+L RLPVK L+R K   K W SLI             +  + L + K T  
Sbjct: 96  ELPDVLVEEILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKITVE 155

Query: 51  NSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLI 110
            S  K +  K   +S+ S + + +  +                   D ++R  GSC+GL+
Sbjct: 156 RSTSKSICIK--FFSRRSGMNAINSDS-------------------DDLLRVPGSCNGLV 194

Query: 111 CLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDH 170
           C+   +   I++ NP TG  T+    P  T     +  GFG D  T  YKVM  +   D 
Sbjct: 195 CVYELDSVYIYLLNPMTGV-TRTLTPPRGTK----LSVGFGIDVVTGTYKVMVLYG-FDR 248

Query: 171 KREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCC---EARNLQGRPMGTLVN 227
                          +  +VF   TN W++   + G +   C     RN         VN
Sbjct: 249 ---------------VGTVVFDLDTNKWRQRYKTAGPMPLSCIPTPERN------PVFVN 287

Query: 228 ESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKP----DFDYAHQAMGLGVVGGRLCL-- 281
            SL WL  +        I   DL T+KF  + +P    D D +   + +  +  RLC+  
Sbjct: 288 GSLFWLLASDFS----EILVMDLHTEKFRTLSQPNDMDDVDVSSGYIYMWSLEDRLCVSN 343

Query: 282 LALGANVELWVMKEYGVKCSWQK 304
           +  G +  +WV+ +  +   W++
Sbjct: 344 VRQGLHSYVWVLVQDELSEKWER 366

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
356561408	376	PREDICTED: F-box/kelch-repeat protein At	0.866	0.757	0.352	4e-39
357458431	370	F-box [Medicago truncatula] gi|355488544	0.887	0.789	0.359	2e-36
255558738	369	ubiquitin-protein ligase, putative [Rici	0.838	0.747	0.355	9e-35
255554010	406	ubiquitin-protein ligase, putative [Rici	0.844	0.684	0.359	2e-34
356519966	375	PREDICTED: F-box/kelch-repeat protein At	0.866	0.76	0.343	1e-33
357458437	489	F-box protein [Medicago truncatula] gi|3	0.863	0.580	0.338	2e-33
357456453	382	F-box/kelch-repeat protein [Medicago tru	0.863	0.743	0.329	3e-33
289540889	377	galactose oxidase [Trifolium repens]	0.832	0.726	0.346	2e-32
224060347	372	predicted protein [Populus trichocarpa]	0.835	0.739	0.350	3e-32
224128980	360	predicted protein [Populus trichocarpa]	0.854	0.780	0.320	5e-32

>gi|356561408|ref|XP_003548973.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max]

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 170/329 (51%), Gaps = 44/329 (13%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSL 63
           LP +++IE+L RLPVKSL+RFKC CK WLSLISDP FA+  +++ A ++   +LL+  + 
Sbjct: 14  LPQELIIEILLRLPVKSLVRFKCVCKLWLSLISDPHFAISHFEQAAIHNERLVLLAPCA- 72

Query: 64  YSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDS-MVRFIGSCHGLICLALDNYREIFI 122
                  RS D +  SLHD  A   L   F+ P    VR +GSC G +   LD  + + +
Sbjct: 73  ----REFRSIDFN-ASLHDNSASAALKLDFLPPKPYYVRILGSCRGFV--LLDCCQSLHV 125

Query: 123 WNPSTGAYTKLPADP---DATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDD 179
           WNPSTG + ++P  P   D    +    YGFGYD ST+ Y V+           +   DD
Sbjct: 126 WNPSTGVHKQVPRSPIVSDMDVRFFTFLYGFGYDPSTHDYLVV-------QASNNPSSDD 178

Query: 180 NSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCE 239
            +  ++     F+   N+WK++E     IH            +G+L+N +LHW+T   C 
Sbjct: 179 YATRVEF----FSLGANAWKEIE----GIH-LSYMNYFHDVRVGSLLNGALHWIT---CR 226

Query: 240 FGMF--GITAFDLATDKFSRVPKP-DFD----YAHQAMGLGVVGG--RLCLLALGANVEL 290
           + +    +  FDL    FS +P P DFD    Y +    LG++G    +C++    + E+
Sbjct: 227 YDLLIHVVVVFDLMERSFSEIPLPVDFDIEYFYDYNFCQLGILGECLSICVVGYYCSTEI 286

Query: 291 WVMKEYGVKCSWQKHYCLGISISADDYGN 319
           WVMKEY V+ SW K     I +  DD  N
Sbjct: 287 WVMKEYKVQSSWTK----TIVVCVDDIPN 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458431|ref|XP_003599496.1| F-box [Medicago truncatula] gi|355488544|gb|AES69747.1| F-box [Medicago truncatula]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 159/314 (50%), Gaps = 22/314 (7%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSL 63
           LP +++I++L RLPVKSL+RFKC CK WL+LISDP FA   +  + R    +I+     +
Sbjct: 9   LPHELIIQILLRLPVKSLIRFKCVCKSWLTLISDPHFAKSHFDLSTRTHTNRIVF----M 64

Query: 64  YSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSM--VRFIGSCHGLICLALDNYREIF 121
            +    +RS D    SL+D  A T L+F FI P+S   +    SC G I L       I+
Sbjct: 65  STPALEIRSIDFE-ASLNDDSASTSLNFNFILPESYSNLEIKSSCRGFIVLTYS--LHIY 121

Query: 122 IWNPSTGAYTKLPADP-DATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDN 180
           +WNPSTG   ++P  P +    Y    YGFGYD S + Y V+    +   K  D ++D+ 
Sbjct: 122 LWNPSTGRLRQIPFPPSNLDAKYVCCLYGFGYDHSRDDYLVVSVSYD---KSVDPIEDNI 178

Query: 181 SRCIDIQGIVFTAKTNSWKKVE-HSFGSIHCCCEARNLQGRP-MGTLVNESLHWLTNNQC 238
           S  +      F+ + N+WK++E H            N    P +GTL N ++HW +    
Sbjct: 179 SSRLKF----FSLRANTWKEIECHGLVKYTHFPYYMNANDDPKVGTLFNGTIHWFSFRH- 233

Query: 239 EFGMFGITAFDLATDKFSRVPKP-DFDYAHQAMGLGVVGGRLCLLALG-ANVELWVMKEY 296
           +  M  I  FDL   K   +P P  FD+      L + G  L L A+G   +E+WVMKEY
Sbjct: 234 DLSMDVIVGFDLVERKLLEMPFPYGFDHEPIDCDLWIFGEFLSLWAMGDETIEIWVMKEY 293

Query: 297 GVKCSWQKHYCLGI 310
            V  SW K   L I
Sbjct: 294 KVHSSWTKALVLSI 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558738|ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223540440|gb|EEF42009.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 155/312 (49%), Gaps = 36/312 (11%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLIS-DPGFALLQYKRTARNSPPKILLSKRS 62
           LP +++I++LSRLPVK L++FKC C+ W  LIS DP FA L  +R  + +   +    R 
Sbjct: 8   LPFEIIIDILSRLPVKHLIQFKCVCRTWQYLISSDPEFAKLHLERVLQVTNVHL---HRL 64

Query: 63  LYSKDSPLRSFDCSTTSLHDQRALTRLH-FPFIRP-DSMVRFIGSCHGLICLALDNYREI 120
           L S D P +S D       D   L R H FP   P D    F+GSC+GLI     +  EI
Sbjct: 65  LLSAD-PFQSVDMEAYCDADDNFLIREHRFPVRNPEDDDFEFVGSCNGLISAVFGSDHEI 123

Query: 121 FIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDN 180
            +WNPSTG   KLPA   +T D   + YGFGYDS  + YK++                 +
Sbjct: 124 TVWNPSTGESRKLPAPTSSTEDK--LFYGFGYDSKLDDYKIV-------------RGASS 168

Query: 181 SRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF 240
           + C ++Q  VF  K N W+ ++    ++HC     N++ +     +N  LHWL +   E 
Sbjct: 169 ASCNEVQMEVFNLKGNRWRAIQ----NLHC-----NVRFQGSAIALNGILHWLVDQLNEG 219

Query: 241 GMFGITAFDLATDKF-SRVPKPDFDYAHQAMGLGVVGGRL--CLLALGANVELWVMKEYG 297
            M  I + DLA +KF   V  PD+   +    L V+G  L  C  +   N E W +K YG
Sbjct: 220 LM--IVSLDLAEEKFLEMVVLPDYVTENWGTELKVLGDSLSVCSSSHTTNFEAWTVKGYG 277

Query: 298 VKCSWQKHYCLG 309
            K SW K +   
Sbjct: 278 SKASWLKLFSFN 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554010|ref|XP_002518045.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223542641|gb|EEF44178.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/317 (35%), Positives = 161/317 (50%), Gaps = 39/317 (12%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
           +S LP+D+++E+LSR+PVK LLRFKC  K W S+ISDP FA LQ KR   NS    +   
Sbjct: 50  ISTLPEDLIVEILSRVPVKPLLRFKCVSKSWNSIISDPRFAKLQLKRAKENSN---ISCN 106

Query: 61  RSLYSKDSPLRSFDCSTTSLHD-QRALTRLHFPFI---RPDSMVRFIGSCHGLICLALDN 116
           R L S  SP RS D       D    +T + FP I    P   VR +GSC GL+CL LD+
Sbjct: 107 RLLLSTWSP-RSLDFEAFCDDDLSNTITNVSFPAIVKGPPTFYVRILGSCDGLVCL-LDD 164

Query: 117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNL 176
           Y  +F+WNP+T  Y +LP    A   Y +  +G GY+ ST+ Y V+F  +  D   E+  
Sbjct: 165 YGTMFLWNPTTRQYKELPKPKGAV--YRMFLHGIGYNFSTDDYGVVFASRFTDDGNEETT 222

Query: 177 QDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWL--T 234
            +           ++T K N+W+K+E     +    E     GR  G   N  L+WL   
Sbjct: 223 VE-----------LYTLKNNTWRKIED----VDSTPEP---SGRS-GIFWNGGLYWLKVK 263

Query: 235 NNQCEFGMFGITAFDLATDKFSRV---PKPDFDYAHQAMGLGVVGGRLCLL--ALGANVE 289
            + CE  ++ I +FD+   KF  V   P+  FD +     LG+ G  LC+     G+  E
Sbjct: 264 GSDCE-KVYIIVSFDMVEKKFKEVLSLPR-HFDPSRYKANLGMSGNSLCVFCECKGSCFE 321

Query: 290 LWVMKEYGVKCSWQKHY 306
            +V+   G +  W K +
Sbjct: 322 TFVLNINGTETFWTKLF 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519966|ref|XP_003528639.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max]

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 160/320 (50%), Gaps = 35/320 (10%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSL 63
           LP +++I++L RLPVKSLLRFKC  K WLSLI+DP FA   ++  A  +   +     SL
Sbjct: 18  LPQELIIQILLRLPVKSLLRFKCVSKSWLSLITDPHFAKSHFELAAARTHRLVFFDTSSL 77

Query: 64  YSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSM--VRFIGSCHGLICLALDNYREIF 121
            +     RS D +  SLHD  A   L+  F+  D+   V+ +GSC G +   LD    ++
Sbjct: 78  IT-----RSIDFNA-SLHDDSASVALNINFLITDTCCNVQILGSCRGFV--LLDCCGSLW 129

Query: 122 IWNPSTGAYTKLPADP-DATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDN 180
           +WNPST A+ ++   P D    +    YGFGYD  T+ Y V+    ++ +       + N
Sbjct: 130 VWNPSTCAHKQISYSPVDMGVSFYTFLYGFGYDPLTDDYLVV----QVSY-------NPN 178

Query: 181 SRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF 240
           S  I  +   F+ + ++WK +E    S   CC+   L     G  +N  +HWL     + 
Sbjct: 179 SDDIVNRVEFFSLRADAWKVIEGVHLSYMNCCDDIRL-----GLFLNGVIHWLAFRH-DV 232

Query: 241 GMFGITAFDLATDKFSRVPKP-DFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVK 299
            M  I AFD     FS +P P DF+       L V+G  L L    +  E+WVM+EY V+
Sbjct: 233 SMEVIVAFDTVERSFSEIPLPVDFECNFNFCDLAVLGESLSLHV--SEAEIWVMQEYKVQ 290

Query: 300 CSWQKHYCLGISISADDYGN 319
            SW K     I +S +D  N
Sbjct: 291 SSWTK----TIDVSIEDIPN 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458437|ref|XP_003599499.1| F-box protein [Medicago truncatula] gi|355488547|gb|AES69750.1| F-box protein [Medicago truncatula]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 164/322 (50%), Gaps = 38/322 (11%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRT-ARNSPPKILLSKRS 62
           LP +++I+++ RLPVKSL+RFKC CK WL+LISD  FA   ++ + A ++   + +S  +
Sbjct: 123 LPHELIIQIMLRLPVKSLIRFKCVCKSWLALISDHNFAKSHFELSPATHTNRIVFMSTLA 182

Query: 63  LYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSM--VRFIGSCHGLICLALDNYREI 120
           L +     RS D    SL+D  A T L+  F+ P+S   +    SC G I L   +   I
Sbjct: 183 LET-----RSIDFE-ASLNDDSASTSLNLNFMLPESYSNLEIKSSCRGFIVLTCSS--NI 234

Query: 121 FIWNPSTGAYTKLPADP-DATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDD 179
           ++WNPST  + K+P  P +    Y    YGFGYD S + Y V+     + + +  +L ++
Sbjct: 235 YLWNPSTRHHKKIPFPPSNLDAKYSCCLYGFGYDHSRDDYLVV----SVSYDKSIDLIEE 290

Query: 180 NSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEAR--------NLQGRP-MGTLVNESL 230
           N   I      F+ + N+W ++E       C    +        N+   P +GTL N ++
Sbjct: 291 N---ISSHLKFFSLRANTWNEIE-------CLGLVKYKHFPYYMNVNDDPTVGTLFNGNI 340

Query: 231 HWLTNNQCEFGMFGITAFDLATDKFSRVPKPD-FDYAHQAMGLGVVGGRLCLLALGA-NV 288
           HW +    +  M  I AFDL   +   +P PD FD+      L + G  L L A+G   +
Sbjct: 341 HWFSFRN-DLSMDVIIAFDLVERELLEMPFPDGFDHEPMDCDLWIFGEFLSLWAMGGVTI 399

Query: 289 ELWVMKEYGVKCSWQKHYCLGI 310
           E+WVMKEY V  SW K   L I
Sbjct: 400 EIWVMKEYKVHSSWTKTLVLSI 421

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456453|ref|XP_003598507.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355487555|gb|AES68758.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 158/310 (50%), Gaps = 26/310 (8%)

Query: 3   NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQY-KRTARNSPPKILLSKR 61
            LP DV+ E++ RLPVK +LRF+C CK W SLISDP F   Q    T RN    +     
Sbjct: 28  TLPSDVIPEIICRLPVKFILRFRCVCKSWNSLISDPKFVKKQLCVSTTRN----LHFRNY 83

Query: 62  SLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIF 121
           +  S+   L S+   +         T+  +P+ +     RFIGSC+G++CLA + Y  + 
Sbjct: 84  AYDSRKYILTSYPLDSDFTDITSNFTQSDWPYAK---FYRFIGSCNGIVCLADNEYTSLV 140

Query: 122 I-WNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDN 180
           I WNPST  + +LP     T   +++ +GFGYDSS + YKV+     +D++    L +D 
Sbjct: 141 ICWNPSTRKFKELPLFEKPTTGLNVMTFGFGYDSSKDNYKVVVV---LDYQF---LDEDY 194

Query: 181 SRCIDIQGIVFTAKTNSWKKV-EHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCE 239
           S     Q +V T  TN W+ + E+ FG +    +         G  V+ +++WL + +  
Sbjct: 195 SFVNKTQVMVHTLGTNIWRTIQEYPFGGLPVPVKK--------GEFVSGTINWLFSEESL 246

Query: 240 FGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVVGG-RLCLLALGANVELWVMKEYGV 298
                I +FDLA + + ++  P+         L V+G  R CL    +  ++W+MKEYG 
Sbjct: 247 ECPCFIVSFDLAKESYQKISPPNLG-GVDVGDLSVLGVLRDCLCVTTSGYDVWLMKEYGN 305

Query: 299 KCSWQKHYCL 308
           K SW K + +
Sbjct: 306 KESWTKLFTI 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289540889|gb|ADD09566.1| galactose oxidase [Trifolium repens]

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 157/323 (48%), Gaps = 49/323 (15%)

Query: 4   LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSL 63
           LP +++I++L RLPVKSL+RFKC CK W SLISDP FA   ++ T  +       + R +
Sbjct: 19  LPRELIIQILLRLPVKSLIRFKCVCKSWFSLISDPHFAKTHFELTTAH-------THRIV 71

Query: 64  YSKDSP-LRSFDCSTTSLHDQRALTRLHFPFIRPDSM--VRFIGSCHGLICLALDNYREI 120
           +   +P +RS D    SL+D  A T     F+ P S   +   GSC G I L   +   I
Sbjct: 72  FITLTPQIRSIDLE-ASLNDDSASTSPKLNFLLPGSYFDLEIKGSCRGFIVLRCSSI--I 128

Query: 121 FIWNPSTGAYTKLPADP-----DATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDN 175
           ++WNPSTG + ++P  P     DA Y      +GFGYD S + Y V+             
Sbjct: 129 YLWNPSTGVHKQIPLPPFGSNLDANY-----FFGFGYDHSKDDYLVV-----------SM 172

Query: 176 LQDDNSRCIDIQGIVFTAKTNSWKKVE----HSFGSIHCCCEARNLQGRPMGTLVNESLH 231
             D NS         F+ + N+WK++E      F  ++ C + R      +G L N +++
Sbjct: 173 CDDPNSSTFLSHFEFFSLRANTWKELECTASTHFPYMNACDDPR------VGFLFNGAIY 226

Query: 232 WLTNNQCEFGMFGITAFDLATDKFSRVPKP-DFDYAHQAMGLGVVGGRLCLLALGA---N 287
           W+   +   G   I  FDL   KF  +  P DFD+     GL V    L L A+      
Sbjct: 227 WMAYRRNISGNI-IVGFDLMDRKFFDMQFPDDFDHEPTYCGLWVFEEFLSLWAMDYEYDT 285

Query: 288 VELWVMKEYGVKCSWQKHYCLGI 310
           VE+WVMKEY V  SW+K   L I
Sbjct: 286 VEVWVMKEYKVNSSWEKTLVLSI 308

Source: Trifolium repens

Species: Trifolium repens

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060347|ref|XP_002300154.1| predicted protein [Populus trichocarpa] gi|222847412|gb|EEE84959.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/322 (35%), Positives = 163/322 (50%), Gaps = 47/322 (14%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTAR----NSPPKI 56
           MS LP D+++++L+ LPVKSLLRFKC CK W SLISDP F +  + +TAR    N   ++
Sbjct: 1   MSKLPQDIMVDILTYLPVKSLLRFKCVCKLWHSLISDPKF-VKSHLKTAREVNSNKSQRL 59

Query: 57  LLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFI---RPDSMVRFIGSCHGLICLA 113
           LLS R+  S D     F+ ++    D  A+  L +P +    P   +  +GSC GLICL 
Sbjct: 60  LLSTRTPQSVD-----FEAASEGDEDN-AVQELEYPDVVRCSPTYFIGIMGSCDGLICLF 113

Query: 114 LDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKRE 173
           +D Y ++ +WNPST  Y ++P  P   + +D    G GYDSS + YK +           
Sbjct: 114 VD-YAKLVLWNPSTRDYKEMPK-PSCDHGFDFFA-GIGYDSSNDDYKFVI---------P 161

Query: 174 DNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWL 233
                D S  I ++  V T KTN W+KV          C+   L G   G   N ++HWL
Sbjct: 162 SCTTADGSEQIMVE--VLTLKTNVWRKVPE-------ICQGTTLVGAYRGLFCNGAVHWL 212

Query: 234 --TNNQCEFGMFGITAFDLATDKFSR-VPKPD-FDYAHQAMGLGVVGGRLCLLAL--GAN 287
               N  E     ++ FD+A ++F   VP PD FD     + LG+ G  LC      G+ 
Sbjct: 213 GKQENGSEKEYVAVS-FDVAEERFKEVVPLPDHFD----TVVLGMSGNSLCAFGECHGSY 267

Query: 288 VELWVM-KEYGVKCSWQKHYCL 308
            E W+  +EY    S+++ + L
Sbjct: 268 FEAWIHEQEYDSSASFRRLFRL 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128980|ref|XP_002328860.1| predicted protein [Populus trichocarpa] gi|222839290|gb|EEE77627.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 151/318 (47%), Gaps = 37/318 (11%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
           MS LP ++++++L+ LP KSL++FKC C+ W SLISDP FA L  KR   +      +++
Sbjct: 1   MSKLPQEIIVDILTYLPAKSLIKFKCVCRSWRSLISDPQFAKLHLKRAHEDEN----INR 56

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQ-RALTRLHFPFIRP--DSMV--RFIGSCHGLICLALD 115
           + L     PL S D    S  D    L +L +P      DS     F+GSC G++C+ L+
Sbjct: 57  QRLLIAADPLYSVDFEAASDGDNGNTLVKLSYPNAESHNDSFAVGLFLGSCDGIVCI-LN 115

Query: 116 NYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDN 175
               + +WNPST    KL + P ++   D    G GYDSST+ YK++         R D 
Sbjct: 116 EVDSVVLWNPSTRESKKL-SGPTSSLHKDF-STGLGYDSSTDDYKMVIASSATASTRSDQ 173

Query: 176 LQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTN 235
           +  +          VFT KTN+W+ V+ S   I        L     G   N +L WL  
Sbjct: 174 IMVE----------VFTLKTNTWRTVQGSLPGI-------TLGSNYYGEFWNGALLWLGK 216

Query: 236 NQCEFGMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLA----LGANVEL 290
                 +  I  FD+  +KF    P P+  Y      L + G  LC+       G+  E 
Sbjct: 217 RDAAHHLDVIVPFDIEKEKFMEAEPLPNHFYTAV---LSISGNCLCVFGELQPSGSYFEA 273

Query: 291 WVMKEYGVKCSWQKHYCL 308
           W+  EYGVK +W++ + +
Sbjct: 274 WLASEYGVKTTWRRLFVV 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.471	0.425	0.363	7.6e-29
TAIR|locus:2077452	417	AT3G07870 "AT3G07870" [Arabido	0.887	0.700	0.270	2.2e-25
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.933	0.743	0.295	6.8e-21
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.601	0.463	0.260	8.1e-21
TAIR|locus:2024437	382	AT1G09650 "AT1G09650" [Arabido	0.717	0.617	0.294	2.8e-17
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.443	0.405	0.329	2e-16
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.869	0.711	0.264	1e-13
TAIR|locus:2094409	372	AT3G22730 "AT3G22730" [Arabido	0.458	0.405	0.303	2.3e-13
TAIR|locus:2088985	386	AT3G17280 "AT3G17280" [Arabido	0.519	0.443	0.313	3.5e-13
TAIR|locus:2033739	302	AT1G32420 "AT1G32420" [Arabido	0.525	0.572	0.333	4.5e-13

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 64/176 (36%), Positives = 99/176 (56%)

Query:     3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFAL-----LQYKR--TARNSPPK 55
             NLP +++ E+L RLPVKSL RFKC C  W SLIS+  FAL     L+  +  T+  SP  
Sbjct:    13 NLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYG 72

Query:    56 ILLSKRSLYSKDSPLRS-FDCSTT--SLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICL 112
             ++ + R  + K   + S ++ ST   S HD   L R ++         + +G+CHGL+C 
Sbjct:    73 VITTSR-YHLKSCCIHSLYNASTVYVSEHDGELLGRDYY---------QVVGTCHGLVCF 122

Query:   113 ALDNYREIFIWNPSTGAYTKLPA-DPDATYDYDIVKYGFGYDSSTNGYKVMFYFQE 167
              +D  + +++WNP+     +L + D + + D  +V YGFGYD S + YKV+   Q+
Sbjct:   123 HVDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQ 178

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 87/322 (27%), Positives = 149/322 (46%)

Query:     1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
             + +LP+D++ ++ SRLP+ S+ R    C+ W S+++  G        ++ +SP K  L  
Sbjct:    25 LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRL-----SSSSSSPTKPCL-- 77

Query:    61 RSLYSKDSPLRS-FDCSTTSLHDQRALTRLHFPFIRPDSMVRF--IGSCHGLICLALDNY 117
               L   DSP+R+       S  ++R  T+  F      SM  F  +GSC+GL+CL+   Y
Sbjct:    78 --LLHCDSPIRNGLHFLDLSEEEKRIKTK-KFTLRFASSMPEFDVVGSCNGLLCLSDSLY 134

Query:   118 RE-IFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVM--FYFQEIDHKRED 174
              + ++++NP T    +LP   +  +D ++V +GFG+   T  YKV+   YF+       +
Sbjct:   135 NDSLYLYNPFTTNSLELPECSNKYHDQELV-FGFGFHEMTKEYKVLKIVYFRG-SSSNNN 192

Query:   175 NLQDDNSRC----IDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESL 230
              +     R      ++Q +  ++KT        S G        R+ +      LVN  L
Sbjct:   193 GIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEA-----LVNGRL 247

Query:   231 HWLTNNQCEFGMFGITAFDLATDKFSRVPKPD---FDYAHQAMXXXXXXXXXXXXXXXXN 287
             H++T  +         +FDL  ++F  +PKPD    +  +  +                 
Sbjct:   248 HFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGK 307

Query:   288 VELWVMKEYGVKCSWQKHYCLG 309
             +++WVMK YGVK SW K Y +G
Sbjct:   308 LDIWVMKTYGVKESWGKEYSIG 329

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 101/342 (29%), Positives = 152/342 (44%)

Query:     1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
             M+ +P D++ ++  RLP K+L+R +   K    LI+DP F      R  +     ++L +
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query:    61 RSL--YSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYR 118
              +L  YS D  L S D    S+ D      +  P  R      F GS +GLI L+ ++  
Sbjct:    61 GALRLYSVD--LDSLD----SVSD------VEHPMKRGGPTEVF-GSSNGLIGLS-NSPT 106

Query:   119 EIFIWNPSTGAYTKLPAD----PDATYDYDIVKYGFGYDSSTNGYKVMFYFQ-EIDHKRE 173
             ++ ++NPST    +LP      PD +     V YG GYDS ++ YKV+   Q +ID   E
Sbjct:   107 DLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDS--E 164

Query:   174 DNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEA--RNLQGRPMGTLVNESLH 231
             D L    S   +++  VF+ K NSWK++E    SI          L  R  G L   SLH
Sbjct:   165 DEL--GCSFPYEVK--VFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLH 220

Query:   232 WLTNNQCEFGMFG-ITAFDLATDKFSRVPKPDFDYAHQAMXXXXXXXXXXXXXXXXN--- 287
             W+   +     F  I  FDLA ++F  V  P+                        N   
Sbjct:   221 WVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQ 280

Query:   288 --VELWVMKEYGVKCSWQKHYCLGISISADDYGNWAALILSQ 327
               V++W+MKEY V+ SW K + +    S   +     L+ S+
Sbjct:   281 SYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSK 322

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
 Identities = 61/234 (26%), Positives = 109/234 (46%)

Query:    82 DQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPAD--PDA 139
             D+R + +L+    R +  V  +GS +GL+C++      +F++NP+TG   +LP +  P +
Sbjct:   146 DRRVMLKLNAKSYRRN-WVEIVGSSNGLVCIS-PGEGAVFLYNPTTGDSKRLPENFRPKS 203

Query:   140 T-YDYDIVK-YGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197
               Y+ D  + YGFG+D  T+ YK++    ++    ED L  D S        V++ K +S
Sbjct:   204 VEYERDNFQTYGFGFDGLTDDYKLV----KLVATSEDIL--DAS--------VYSLKADS 249

Query:   198 WKKVEHSFGSIHCCCEARNLQGR-PMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFS 256
             W+++        C     +  G    G   N ++HW+   +       + AFD+ T++F 
Sbjct:   250 WRRI--------CNLNYEHNDGSYTSGVHFNGAIHWVFT-ESRHNQRVVVAFDIQTEEFR 300

Query:   257 RVPKPDF--DYAHQ----AMXXXXXXXXXXXXXXXXNVELWVMKEYGVKCSWQK 304
              +P PD   D +H+     +                + ++WVM EYG   SW +
Sbjct:   301 EMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSR 354

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024437 AT1G09650 "AT1G09650" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 82/278 (29%), Positives = 124/278 (44%)

Query:     1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
             M +LP +V+  +L RL    LLRFK   KQW S I  P F   Q+ +  ++  P +L+  
Sbjct:    10 MESLPHEVVECILERLDADPLLRFKAVSKQWKSTIESPFFQRRQFTQRQQSGNPDVLMVS 69

Query:    61 RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIG----SCHGLICLALDN 116
             R     +S + +    TT +    +  ++  P+   +   +       SC GL+CL  D 
Sbjct:    70 RCA-DINSEIEAL---TTLVLGSSSSVKIPTPWEEEEEEDKEYSVSQDSCDGLVCL-FDK 124

Query:   117 YREIFIWNPSTGAYTKLP---------ADPDATYD--YDIVKYGFGYDSSTNGYKVMFYF 165
             ++  F++NP+T  Y  LP         A  D  YD  Y + + GFG D  T  YK ++ +
Sbjct:   125 FKSGFVFNPATRWYHPLPLCQLQQLLIAIGDGFYDLGYRVSRLGFGKDKLTGTYKPVWLY 184

Query:   166 QEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTL 225
               I    E  L++  + C      VF   TN+W+ V  +            + G P    
Sbjct:   185 NSI----EIGLENATT-CE-----VFDFSTNAWRYVSPA--------APYRIVGCPAPVC 226

Query:   226 VNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDF 263
             V+ SLHW T  +CE     I +FDL T+ F  V K  F
Sbjct:   227 VDGSLHWFT--ECEETK--ILSFDLHTETFQVVSKAPF 260

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 56/170 (32%), Positives = 86/170 (50%)

Query:     4 LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARN-SPPKILLSKRS 62
             LP+++ IE+L RL +K L RF+C CK W  LI+DPGF       T R+ SP K +    S
Sbjct:     5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFT-----ETYRDMSPAKFV----S 55

Query:    63 LYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMV---RFIGSCHGLICLALDNYRE 119
              Y K+  +   +      H      +L FP     SM+     +  C G +C+ L N+  
Sbjct:    56 FYDKNFYMLDVE----GKHPV-ITNKLDFPL--DQSMIDESTCVLHCDGTLCVTLKNHT- 107

Query:   120 IFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEID 169
             + +WNP +  +  +P +P    D +I+  GFGYD   + YKV+ +   +D
Sbjct:   108 LMVWNPFSKQFKIVP-NPGIYQDSNIL--GFGYDPVHDDYKVVTFIDRLD 154

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 84/317 (26%), Positives = 132/317 (41%)

Query:     1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
             M+  P D++ E+  RL   +L++ +   K   SLI  P F     +R        ++L +
Sbjct:     1 MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLR 60

Query:    61 RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYREI 120
                      LR     T  L     ++ +  P ++        GS +G+I L  ++  ++
Sbjct:    61 GPRL-----LR-----TVELDSPENVSDIPHP-LQAGGFTEVFGSFNGVIGLC-NSPVDL 108

Query:   121 FIWNPSTGAYTKLPADP------DATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKRED 174
              I+NPST    +LP +P      D T +Y  V YG GYDS  + +KV+   + +  K ++
Sbjct:   109 AIFNPSTRKIHRLPIEPIDFPERDITREY--VFYGLGYDSVGDDFKVV---RIVQCKLKE 163

Query:   175 NLQDDNSRCIDIQGIVFTAKTNSWKKV--EHSFGSIHCCCEARNLQGRPMGTLVNESLHW 232
               +     C  ++  VF+ K NSWK+V     F  +        L  R  G +VN  LHW
Sbjct:   164 GKK--KFPC-PVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHW 220

Query:   233 -LTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMXXXXXXXXXXXX--XXXXNVE 289
              L   Q       I  +DLA+D    +  P   Y    M                  +V+
Sbjct:   221 ILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCLMCYDEYSHVD 280

Query:   290 LWVMKEYGVKCSWQKHY 306
             +WV+KEY    SW K Y
Sbjct:   281 VWVLKEYEDYKSWTKLY 297

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094409 AT3G22730 "AT3G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
 Identities = 50/165 (30%), Positives = 81/165 (49%)

Query:     1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
             MS+L  D++ E+LSR+P  SL R +  CK W +L  +PGF   Q+ +  + S   +L+ K
Sbjct:     3 MSDLSLDLVEEILSRVPATSLKRLRSTCKLWNALFKNPGFTKKQFLKAPKES--LVLMLK 60

Query:    61 RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLI-CLALDNYRE 119
                YS    + +   S  S+  + AL   ++P    +  +     C GL+ C  +D YR 
Sbjct:    61 E--YSVCPMIANLSVSAPSIEFKGALNLKNYPPYSEEVDIHEACHCDGLLLCTTMD-YR- 116

Query:   120 IFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNG--YKVM 162
             I +WNP  G  T+    P   Y     ++  GY+ +  G  YK++
Sbjct:   117 IVVWNPCLGE-TRWIRWPKNIYS----RFALGYEKNKYGRIYKIL 156

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088985 AT3G17280 "AT3G17280" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 58/185 (31%), Positives = 85/185 (45%)

Query:     1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
             +S+LP D+L E+LSRLP KS+ + K  CK+W +L  DP F   +  + AR +   + L  
Sbjct:     4 ISDLPYDLLPEILSRLPTKSIPKLKTTCKKWYALFKDPKFVEKKLGKAARET---VFLMN 60

Query:    61 RSLYSKDSPLRSFDCS-TTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYRE 119
               + S    +       + S+     LT    P    D  +  I  C+GL   A  N R 
Sbjct:    61 HEVNSISVDIHGIPKGYSVSMDFTGTLT---IPE-GSDLEIFRIHHCNGLFLCATMNCR- 115

Query:   120 IFIWNPSTGAYTKLPADPDATYDYD-IVKYGFGYD--SSTNGYKVMFYFQEIDHKREDNL 176
             + +WNP TG  T +   P   YD D I   G G D  SS + YK++    +   K    +
Sbjct:   116 LVVWNPCTGQITWII--PRTRYDSDDIYALGCGDDKSSSLHSYKILRCCDDNQKKPVSEI 173

Query:   177 QDDNS 181
              D +S
Sbjct:   174 YDFSS 178

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2033739 AT1G32420 "AT1G32420" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
 Identities = 65/195 (33%), Positives = 90/195 (46%)

Query:     3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDP-GFALLQYKRTARNSPP---KILL 58
             N+P D+ +E+L +LP KSLLRF+C  KQWLS+IS    F      R+    PP   K++ 
Sbjct:    36 NIPLDLTVEILKKLPAKSLLRFQCVSKQWLSIISSRRDFIDSIVTRSLTQPPPRDIKLIF 95

Query:    59 SKRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDNYR 118
               + LY        F  +     D+ +LT       R  S   ++    GLIC       
Sbjct:    96 HHQVLYPGPH-FFIFSSTYPQNTDKESLTT------RASSY-HYV---RGLICCWSHCPT 144

Query:   119 EIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMF---YFQEIDHKREDN 175
              + I+NP+T  Y  +P D +  Y Y I    FGYD   N YKVM    Y+ E    +   
Sbjct:   145 TVDIYNPTTRQYYTVP-DTNR-YQY-IETCFFGYDPVENQYKVMVLPKYYMEESPCQVFT 201

Query:   176 LQDDNSR-CIDIQGI 189
             + D   +   DIQGI
Sbjct:   202 VGDPIEKPWRDIQGI 216

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I002439 hypothetical protein (372 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	8e-21
pfam00646	48	pfam00646, F-box, F-box domain	2e-08
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-08
pfam12937	47	pfam12937, F-box-like, F-box-like	2e-07
pfam07734	159	pfam07734, FBA_1, F-box associated	0.003

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 89.0 bits (221), Expect = 8e-21
 Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 29/209 (13%)

Query: 103 IGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVM 162
           +  C GLIC +      + +WNPSTG    LP       + +   Y  GYD     YKV+
Sbjct: 1   VVPCDGLICFSYGK--RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVL 58

Query: 163 FYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPM 222
            +     ++ +   Q            V+T  +NSW+ +E S               +  
Sbjct: 59  CFSDRSGNRNQSEHQ------------VYTLGSNSWRTIECSPPHH---------PLKSR 97

Query: 223 GTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYA--HQAMGLGVVGGRLC 280
           G  +N  L++L         + I +FD+++++F          +     + L    G+L 
Sbjct: 98  GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLA 157

Query: 281 LLA---LGANVELWVMKEYGVKCSWQKHY 306
           +L       N +LWV+ + G K  W K +
Sbjct: 158 VLKQKKDTNNFDLWVLNDAG-KQEWSKLF 185

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 1  MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGF 40
          + +LPDD+L+E+LSRL  K LLR     K+W SL+     
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 4  LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGF 40
          LPD++L E+LS+L  K LLR +   ++W SLI    F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 1  MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDP 38
          +S+LPD++L+++ S L  + LLR    C++W  L SD 
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDD 38

This is an F-box-like family. Length = 47

>gnl|CDD|219544 pfam07734, FBA_1, F-box associated

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 226 VNESLHWLTNNQCEFGMFGITAFDLATDKFS-RVPKPDFDYAHQAMGLGVVGG-RLCLLA 283
           +  + +WL + +       + +FD  T++F  R+P P        + L VV   +L +L 
Sbjct: 4   LKGNTYWLASEKETNEEDFLLSFDFTTERFGPRLPLPFQSPDLDTVSLSVVREEKLAVLL 63

Query: 284 LGA---NVELWVMK--EYGVKCSWQK 304
                  +E+WV    E     SW K
Sbjct: 64  QCDDTSKIEIWVTTKIEPNAV-SWSK 88

Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.98
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.43
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.43
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.26
PHA02713	557	hypothetical protein; Provisional	98.99
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.97
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.86
PHA02713	557	hypothetical protein; Provisional	98.84
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.8
PHA02790	480	Kelch-like protein; Provisional	98.75
PHA02790	480	Kelch-like protein; Provisional	98.74
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.7
PHA03098	534	kelch-like protein; Provisional	98.68
PHA03098	534	kelch-like protein; Provisional	98.67
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.59
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.45
PLN02153	341	epithiospecifier protein	98.41
PLN02153	341	epithiospecifier protein	98.4
PLN02193	470	nitrile-specifier protein	98.4
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.28
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.28
PLN02193	470	nitrile-specifier protein	98.23
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.23
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.02
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.48
KOG1230	521	consensus Protein containing repeated kelch motifs	97.03
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.81
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.77
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.54
KOG1230	521	consensus Protein containing repeated kelch motifs	95.43
KOG4693	392	consensus Uncharacterized conserved protein, conta	95.31
PF13964	50	Kelch_6: Kelch motif	95.27
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	95.22
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	94.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	94.56
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	94.41
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	94.29
PF13964	50	Kelch_6: Kelch motif	94.28
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	92.06
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	91.85
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	91.69
smart00612	47	Kelch Kelch domain.	91.63
KOG4341	483	consensus F-box protein containing LRR [General fu	90.21
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	88.59
smart00284	255	OLF Olfactomedin-like domains.	88.36
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	86.62
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	86.27
PLN02772	398	guanylate kinase	86.04
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	85.59
smart00612	47	Kelch Kelch domain.	83.81
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	82.18
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	80.72
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	80.58

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.98  E-value=1.1e-30  Score=225.62  Aligned_cols=184  Identities=26%  Similarity=0.481  Sum_probs=140.9

Q ss_pred             EccccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCC
Q 037927          103 IGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR  182 (329)
Q Consensus       103 ~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  182 (329)
                      +++||||||+. . ...++||||+||+++.||+++..........+++|||+.+++||||++....            ..
T Consensus         1 ~~sCnGLlc~~-~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~------------~~   66 (230)
T TIGR01640         1 VVPCDGLICFS-Y-GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS------------GN   66 (230)
T ss_pred             CcccceEEEEe-c-CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec------------CC
Confidence            47999999987 3 3789999999999999998765322112226789999999999999998430            11


Q ss_pred             cccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-ceEEEEEECCCcccc-ccCC
Q 037927          183 CIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-MFGITAFDLATDKFS-RVPK  260 (329)
Q Consensus       183 ~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~~-~i~l  260 (329)
                      .....++||++++++||.+..    .+...   . .... +|++||++||++. ..... ...|++||+++|+|+ .+++
T Consensus        67 ~~~~~~~Vys~~~~~Wr~~~~----~~~~~---~-~~~~-~v~~~G~lyw~~~-~~~~~~~~~IvsFDl~~E~f~~~i~~  136 (230)
T TIGR01640        67 RNQSEHQVYTLGSNSWRTIEC----SPPHH---P-LKSR-GVCINGVLYYLAY-TLKTNPDYFIVSFDVSSERFKEFIPL  136 (230)
T ss_pred             CCCccEEEEEeCCCCcccccc----CCCCc---c-ccCC-eEEECCEEEEEEE-ECCCCCcEEEEEEEcccceEeeeeec
Confidence            245789999999999999985    33322   1 2233 8999999999997 54321 238999999999999 5899


Q ss_pred             CCCCCCC-ceeEEEEECCcEEEEEc---CCEEEEEEeeeCCCccceEEeeccceEEecC
Q 037927          261 PDFDYAH-QAMGLGVVGGRLCLLAL---GANVELWVMKEYGVKCSWQKHYCLGISISAD  315 (329)
Q Consensus       261 P~~~~~~-~~~~l~~~~g~L~~~~~---~~~l~vW~l~~~~~~~~W~~~~~~~~~i~~~  315 (329)
                      |...... ....|++++|+|+++..   ..+++||+|++++.+ .|+|+    ++|+..
T Consensus       137 P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~----~~i~~~  190 (230)
T TIGR01640       137 PCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKL----FTVPIP  190 (230)
T ss_pred             CccccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEE----EEEcCc
Confidence            8765321 24679999999999988   367999999988754 59999    888753

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.43  E-value=1e-12  Score=102.71  Aligned_cols=81  Identities=26%  Similarity=0.496  Sum_probs=66.0

Q ss_pred             eeEECceeeEEeeccccCCceEEEEEECCCccccccCCCCCC-CCCceeEEEEECCcEEEEEc--C---CEEEEEEeeeC
Q 037927          223 GTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFD-YAHQAMGLGVVGGRLCLLAL--G---ANVELWVMKEY  296 (329)
Q Consensus       223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~-~~~~~~~l~~~~g~L~~~~~--~---~~l~vW~l~~~  296 (329)
                      ++++||++||++. ........|++||+++|+|+.+++|... .......|.+++|+|+++..  .   ..++||+|+|+
T Consensus         1 gicinGvly~~a~-~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    1 GICINGVLYWLAW-SEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             CEEECcEEEeEEE-ECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence            5899999999999 5333378999999999999999999221 11156789999999999988  2   36999999988


Q ss_pred             CCccceEEe
Q 037927          297 GVKCSWQKH  305 (329)
Q Consensus       297 ~~~~~W~~~  305 (329)
                      + +++|+|.
T Consensus        80 ~-k~~Wsk~   87 (129)
T PF08268_consen   80 E-KQEWSKK   87 (129)
T ss_pred             c-cceEEEE
Confidence            7 5789988

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.43  E-value=1.7e-12  Score=105.93  Aligned_cols=93  Identities=37%  Similarity=0.629  Sum_probs=73.3

Q ss_pred             eeEECceeeEEeeccccCC-ceEEEEEECCCccc-cccCCCCCCCC-CceeEEEE-ECCcEEEEEc---CCEEEEEEeee
Q 037927          223 GTLVNESLHWLTNNQCEFG-MFGITAFDLATDKF-SRVPKPDFDYA-HQAMGLGV-VGGRLCLLAL---GANVELWVMKE  295 (329)
Q Consensus       223 ~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~-~~i~lP~~~~~-~~~~~l~~-~~g~L~~~~~---~~~l~vW~l~~  295 (329)
                      +|++||++||++. ..... ...|++||+++|+| ..+++|..... .....|++ .+|+||++..   ...+.||+|++
T Consensus         1 gV~vnG~~hW~~~-~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~   79 (164)
T PF07734_consen    1 GVFVNGALHWLAY-DENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK   79 (164)
T ss_pred             CEEECCEEEeeEE-ecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence            5899999999998 55432 23899999999999 78899988762 24567754 4789999975   55799999997


Q ss_pred             CCC-ccceEEeeccceEEecCCCCcc
Q 037927          296 YGV-KCSWQKHYCLGISISADDYGNW  320 (329)
Q Consensus       296 ~~~-~~~W~~~~~~~~~i~~~~~~~~  320 (329)
                      ++. +++|+|.    ++|++.++...
T Consensus        80 ~~~~~~SWtK~----~~i~~~~~~~~  101 (164)
T PF07734_consen   80 YGYGKESWTKL----FTIDLPPLPSL  101 (164)
T ss_pred             eccCcceEEEE----EEEecCCCCCc
Confidence            652 7899999    99997665443

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.26  E-value=7.9e-10  Score=99.74  Aligned_cols=37  Identities=35%  Similarity=0.643  Sum_probs=33.6

Q ss_pred             CCCCcHHHHHHHHhcCC-cchhhhhhhchHhhHhhcCC
Q 037927            1 MSNLPDDVLIEVLSRLP-VKSLLRFKCACKQWLSLISD   37 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp-~~~l~r~~~VcK~W~~li~~   37 (329)
                      .++||+|||..|..||| ..++.|+|+||++||+.+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            36899999999999998 66999999999999998773

>PHA02713 hypothetical protein; Provisional

Probab=98.99  E-value=3.6e-08  Score=95.72  Aligned_cols=160  Identities=8%  Similarity=0.058  Sum_probs=106.0

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+..+||.+++|..+|+++..+..  ...  ..++     =|+.+++..      .      +......+++|+..+++
T Consensus       320 ~~v~~Yd~~~n~W~~~~~m~~~R~~--~~~--~~~~-----g~IYviGG~------~------~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        320 NKVYKINIENKIHVELPPMIKNRCR--FSL--AVID-----DTIYAIGGQ------N------GTNVERTIECYTMGDDK  378 (557)
T ss_pred             ceEEEEECCCCeEeeCCCCcchhhc--eeE--EEEC-----CEEEEECCc------C------CCCCCceEEEEECCCCe
Confidence            4588999999999999999876532  111  2222     245555522      0      12234579999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-------------------CceEEEEEECCCcccccc
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-------------------GMFGITAFDLATDKFSRV  258 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-------------------~~~~i~~fD~~~~~~~~i  258 (329)
                      |..++.    ||...     .... .+.++|.+|.+++ ....                   ....+.+||+.+++|+.+
T Consensus       379 W~~~~~----mp~~r-----~~~~-~~~~~g~IYviGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v  447 (557)
T PHA02713        379 WKMLPD----MPIAL-----SSYG-MCVLDQYIYIIGG-RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL  447 (557)
T ss_pred             EEECCC----CCccc-----cccc-EEEECCEEEEEeC-CCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence            999987    88766     3333 7889999999987 5321                   024699999999999977


Q ss_pred             -CCCCCCCCCceeEEEEECCcEEEEEc--CCEEEEEEeeeCCCc--cceEEeeccceEE
Q 037927          259 -PKPDFDYAHQAMGLGVVGGRLCLLAL--GANVELWVMKEYGVK--CSWQKHYCLGISI  312 (329)
Q Consensus       259 -~lP~~~~~~~~~~l~~~~g~L~~~~~--~~~l~vW~l~~~~~~--~~W~~~~~~~~~i  312 (329)
                       ++|...   ....+++.+|+||+++.  +.....=..+.++++  +.|+.+..||...
T Consensus       448 ~~m~~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        448 PNFWTGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             CCCCccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence             555443   23567889999999986  211111112333333  4699996666443

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.97  E-value=5.4e-10  Score=70.84  Aligned_cols=42  Identities=33%  Similarity=0.734  Sum_probs=36.3

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHH
Q 037927            1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFAL   42 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~   42 (329)
                      |..||+|++.+||++||++++.++..|||+|+.++.++.+-+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            678999999999999999999999999999999998775443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.86  E-value=5.6e-08  Score=94.22  Aligned_cols=157  Identities=15%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+..+||.|++|..+|++...+..       +|....  ..++.+++..      +      +......+|.|+..++.
T Consensus       349 ~~ve~YD~~~~~W~~~a~M~~~R~~-------~~v~~l--~g~iYavGG~------d------g~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  349 SSVERYDPRTNQWTPVAPMNTKRSD-------FGVAVL--DGKLYAVGGF------D------GEKSLNSVECYDPVTNK  407 (571)
T ss_pred             ceEEEecCCCCceeccCCccCcccc-------ceeEEE--CCEEEEEecc------c------cccccccEEEecCCCCc
Confidence            5788999999999999999988753       121111  2445555532      1      45566789999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC--CceEEEEEECCCcccccc-CCCCCCCCCceeEEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF--GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGV  274 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~  274 (329)
                      |..++.    |+...     .... .+.++|.+|-+++ ....  ....+.+||+.+++|+.+ +++...   ....+++
T Consensus       408 W~~va~----m~~~r-----~~~g-v~~~~g~iYi~GG-~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R---~~~g~a~  473 (571)
T KOG4441|consen  408 WTPVAP----MLTRR-----SGHG-VAVLGGKLYIIGG-GDGSSNCLNSVECYDPETNTWTLIAPMNTRR---SGFGVAV  473 (571)
T ss_pred             ccccCC----CCcce-----eeeE-EEEECCEEEEEcC-cCCCccccceEEEEcCCCCceeecCCccccc---ccceEEE
Confidence            999998    77654     3333 7899999999998 5432  257999999999999876 555544   3456889


Q ss_pred             ECCcEEEEEc-CCEEEEEEeeeCC-CccceEEeeccc
Q 037927          275 VGGRLCLLAL-GANVELWVMKEYG-VKCSWQKHYCLG  309 (329)
Q Consensus       275 ~~g~L~~~~~-~~~l~vW~l~~~~-~~~~W~~~~~~~  309 (329)
                      .+|+||+++. ...-.+-..+-++ ....|+.+..|.
T Consensus       474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~  510 (571)
T KOG4441|consen  474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT  510 (571)
T ss_pred             ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence            9999999998 2222222233232 245799985443

>PHA02713 hypothetical protein; Provisional

Probab=98.84  E-value=9e-08  Score=92.93  Aligned_cols=159  Identities=9%  Similarity=0.074  Sum_probs=101.1

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCC---------CCCcccceE
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDD---------NSRCIDIQG  188 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~---------~~~~~~~~~  188 (329)
                      ..+.++||.|++|..+|+++..+..  ..  +..++     =++.+++..   .....+.+.         +.......+
T Consensus       367 ~sve~Ydp~~~~W~~~~~mp~~r~~--~~--~~~~~-----g~IYviGG~---~~~~~~~~~~~~~~~~~~~~~~~~~~v  434 (557)
T PHA02713        367 RTIECYTMGDDKWKMLPDMPIALSS--YG--MCVLD-----QYIYIIGGR---TEHIDYTSVHHMNSIDMEEDTHSSNKV  434 (557)
T ss_pred             ceEEEEECCCCeEEECCCCCccccc--cc--EEEEC-----CEEEEEeCC---CcccccccccccccccccccccccceE
Confidence            3578999999999999998876543  11  12222     233344321   000000000         001124579


Q ss_pred             EEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCC-cccccc-CCCCCC
Q 037927          189 IVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLAT-DKFSRV-PKPDFD  264 (329)
Q Consensus       189 ~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~-~~~~~i-~lP~~~  264 (329)
                      +.|+.++++|..++.    |+...     .... .+.++|.+|.+++ .....  ...+..||+.+ ++|+.+ ++|...
T Consensus       435 e~YDP~td~W~~v~~----m~~~r-----~~~~-~~~~~~~IYv~GG-~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        435 IRYDTVNNIWETLPN----FWTGT-----IRPG-VVSHKDDIYVVCD-IKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             EEECCCCCeEeecCC----CCccc-----ccCc-EEEECCEEEEEeC-CCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence            999999999999987    77665     3333 7899999999987 53211  24678999999 799977 666544


Q ss_pred             CCCceeEEEEECCcEEEEEc-CCEEEEEEeeeCC-CccceEEe
Q 037927          265 YAHQAMGLGVVGGRLCLLAL-GANVELWVMKEYG-VKCSWQKH  305 (329)
Q Consensus       265 ~~~~~~~l~~~~g~L~~~~~-~~~l~vW~l~~~~-~~~~W~~~  305 (329)
                         ....+++.+|+|++++. ....   ..+-++ .+.+|+.+
T Consensus       504 ---~~~~~~~~~~~iyv~Gg~~~~~---~~e~yd~~~~~W~~~  540 (557)
T PHA02713        504 ---SALHTILHDNTIMMLHCYESYM---LQDTFNVYTYEWNHI  540 (557)
T ss_pred             ---ccceeEEECCEEEEEeeeccee---ehhhcCcccccccch
Confidence               34678889999999997 3211   223332 24579887

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.80  E-value=2.1e-09  Score=68.46  Aligned_cols=43  Identities=42%  Similarity=0.654  Sum_probs=36.8

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHH
Q 037927            2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQ   44 (329)
Q Consensus         2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~   44 (329)
                      ..||+|++.+||.+|+++++.+++.|||+|+.++.+..+...+
T Consensus         4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            4699999999999999999999999999999999998876654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PHA02790 Kelch-like protein; Provisional

Probab=98.75  E-value=4.1e-07  Score=86.96  Aligned_cols=148  Identities=11%  Similarity=-0.008  Sum_probs=99.9

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+..+||.+++|..+|+++..+..  ..  +...+     -++.+++.               ......++.|+..+++
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~--~~--~v~~~-----~~iYviGG---------------~~~~~sve~ydp~~n~  342 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLY--AS--GVPAN-----NKLYVVGG---------------LPNPTSVERWFHGDAA  342 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhc--ce--EEEEC-----CEEEEECC---------------cCCCCceEEEECCCCe
Confidence            4577899999999999999876532  11  11222     24555552               1223568999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCCCCCCCCceeEEEEEC
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVG  276 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~  276 (329)
                      |..++.    ||...     .... .+.++|.+|.+++ .... ...+..||+.+++|+.+ ++|...   .....++.+
T Consensus       343 W~~~~~----l~~~r-----~~~~-~~~~~g~IYviGG-~~~~-~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~  407 (480)
T PHA02790        343 WVNMPS----LLKPR-----CNPA-VASINNVIYVIGG-HSET-DTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFG  407 (480)
T ss_pred             EEECCC----CCCCC-----cccE-EEEECCEEEEecC-cCCC-CccEEEEeCCCCEEEeCCCCCCcc---ccceEEEEC
Confidence            999987    87655     3333 7899999999988 5432 35688999999999987 444332   234566889


Q ss_pred             CcEEEEEcCCEEEEEEeeeCCCccceEEeeccce
Q 037927          277 GRLCLLALGANVELWVMKEYGVKCSWQKHYCLGI  310 (329)
Q Consensus       277 g~L~~~~~~~~l~vW~l~~~~~~~~W~~~~~~~~  310 (329)
                      |+|++++.  ..+++..    ..+.|+.+..|+.
T Consensus       408 ~~IYv~GG--~~e~ydp----~~~~W~~~~~m~~  435 (480)
T PHA02790        408 RRLFLVGR--NAEFYCE----SSNTWTLIDDPIY  435 (480)
T ss_pred             CEEEEECC--ceEEecC----CCCcEeEcCCCCC
Confidence            99999974  2233222    2456998855543

>PHA02790 Kelch-like protein; Provisional

Probab=98.74  E-value=6.9e-07  Score=85.42  Aligned_cols=136  Identities=8%  Similarity=0.048  Sum_probs=93.3

Q ss_pred             cccccEEEEEc--CCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCC
Q 037927          105 SCHGLICLALD--NYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR  182 (329)
Q Consensus       105 s~~Glll~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  182 (329)
                      ..+|.|-+..+  ....+-.++|.+++|..+|+++..+..    ..+..++     =++.+++..              .
T Consensus       316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~----~~~~~~~-----g~IYviGG~--------------~  372 (480)
T PHA02790        316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN----PAVASIN-----NVIYVIGGH--------------S  372 (480)
T ss_pred             EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc----cEEEEEC-----CEEEEecCc--------------C
Confidence            45565544312  224567889999999999999866532    1122222     245555521              1


Q ss_pred             cccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCC
Q 037927          183 CIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKP  261 (329)
Q Consensus       183 ~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP  261 (329)
                      .....++.|+.++++|+.++.    |+...     .... .+.++|.+|.+++        ....||+++++|+.+ ++|
T Consensus       373 ~~~~~ve~ydp~~~~W~~~~~----m~~~r-----~~~~-~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~m~  434 (480)
T PHA02790        373 ETDTTTEYLLPNHDQWQFGPS----TYYPH-----YKSC-ALVFGRRLFLVGR--------NAEFYCESSNTWTLIDDPI  434 (480)
T ss_pred             CCCccEEEEeCCCCEEEeCCC----CCCcc-----ccce-EEEECCEEEEECC--------ceEEecCCCCcEeEcCCCC
Confidence            123568999999999999987    77665     2332 6789999999877        357899999999987 454


Q ss_pred             CCCCCCceeEEEEECCcEEEEEc
Q 037927          262 DFDYAHQAMGLGVVGGRLCLLAL  284 (329)
Q Consensus       262 ~~~~~~~~~~l~~~~g~L~~~~~  284 (329)
                      ...   ....+++.+|+|++++.
T Consensus       435 ~~r---~~~~~~v~~~~IYviGG  454 (480)
T PHA02790        435 YPR---DNPELIIVDNKLLLIGG  454 (480)
T ss_pred             CCc---cccEEEEECCEEEEECC
Confidence            332   34577889999999997

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.74  E-value=7.6e-09  Score=63.41  Aligned_cols=39  Identities=46%  Similarity=0.847  Sum_probs=36.4

Q ss_pred             CcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHH
Q 037927            4 LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFAL   42 (329)
Q Consensus         4 LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~   42 (329)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.70  E-value=5.3e-07  Score=87.52  Aligned_cols=150  Identities=17%  Similarity=0.229  Sum_probs=104.4

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+-.++|.|.+|..++++...+.       +.|.-...  =++.+++..      +   .  .......++.|+..+++
T Consensus       396 ~svE~YDp~~~~W~~va~m~~~r~-------~~gv~~~~--g~iYi~GG~------~---~--~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  396 NSVECYDPVTNKWTPVAPMLTRRS-------GHGVAVLG--GKLYIIGGG------D---G--SSNCLNSVECYDPETNT  455 (571)
T ss_pred             ccEEEecCCCCcccccCCCCccee-------eeEEEEEC--CEEEEEcCc------C---C--CccccceEEEEcCCCCc
Confidence            357799999999999998886432       23322222  233334321      0   0  12256899999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCcccccc-CCCCCCCCCceeEEEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVV  275 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~  275 (329)
                      |+.++.    |+...     .... .+.++|.+|.+++ .... ....+.+||+.+++|..+ +++...   ....++..
T Consensus       456 W~~~~~----M~~~R-----~~~g-~a~~~~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~  521 (571)
T KOG4441|consen  456 WTLIAP----MNTRR-----SGFG-VAVLNGKIYVVGG-FDGTSALSSVERYDPETNQWTMVAPMTSPR---SAVGVVVL  521 (571)
T ss_pred             eeecCC----ccccc-----ccce-EEEECCEEEEECC-ccCCCccceEEEEcCCCCceeEcccCcccc---ccccEEEE
Confidence            999998    88776     3333 7899999999998 5432 255699999999999988 343333   34677889


Q ss_pred             CCcEEEEEc------CCEEEEEEeeeCCCccceEEe
Q 037927          276 GGRLCLLAL------GANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       276 ~g~L~~~~~------~~~l~vW~l~~~~~~~~W~~~  305 (329)
                      +|+|++++.      -.+++.|  +  .....|+..
T Consensus       522 ~~~ly~vGG~~~~~~l~~ve~y--d--p~~d~W~~~  553 (571)
T KOG4441|consen  522 GGKLYAVGGFDGNNNLNTVECY--D--PETDTWTEV  553 (571)
T ss_pred             CCEEEEEecccCccccceeEEc--C--CCCCceeeC
Confidence            999999998      3344555  1  124679998

>PHA03098 kelch-like protein; Provisional

Probab=98.68  E-value=6.5e-07  Score=86.95  Aligned_cols=155  Identities=11%  Similarity=0.084  Sum_probs=103.7

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+..+||.|++|..+|+++..+..  ...  ...+    . ++.+++..      .      .......+++|+..+++
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~--~~~--~~~~----~-~lyv~GG~------~------~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKN--PGV--TVFN----N-RIYVIGGI------Y------NSISLNTVESWKPGESK  369 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCccccc--ceE--EEEC----C-EEEEEeCC------C------CCEecceEEEEcCCCCc
Confidence            3688999999999999988865532  111  1222    2 35555521      0      12345678999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCCcccccc-CCCCCCCCCceeEEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGV  274 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~  274 (329)
                      |+..+.    +|...     .... .+.++|.+|.+++ .....  ...+..||+.+++|..+ ++|....   ....+.
T Consensus       370 W~~~~~----lp~~r-----~~~~-~~~~~~~iYv~GG-~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---~~~~~~  435 (534)
T PHA03098        370 WREEPP----LIFPR-----YNPC-VVNVNNLIYVIGG-ISKNDELLKTVECFSLNTNKWSKGSPLPISHY---GGCAIY  435 (534)
T ss_pred             eeeCCC----cCcCC-----ccce-EEEECCEEEEECC-cCCCCcccceEEEEeCCCCeeeecCCCCcccc---CceEEE
Confidence            999887    77655     3333 6789999999987 53221  46799999999999987 4554432   235567


Q ss_pred             ECCcEEEEEc-C--C----EEEEEEeeeCCCccceEEeeccc
Q 037927          275 VGGRLCLLAL-G--A----NVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       275 ~~g~L~~~~~-~--~----~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      .+|+|++++. .  .    .-.+|.++-.  ...|+++..|+
T Consensus       436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~  475 (534)
T PHA03098        436 HDGKIYVIGGISYIDNIKVYNIVESYNPV--TNKWTELSSLN  475 (534)
T ss_pred             ECCEEEEECCccCCCCCcccceEEEecCC--CCceeeCCCCC
Confidence            7999999986 1  1    1236666642  45799985444

>PHA03098 kelch-like protein; Provisional

Probab=98.67  E-value=1.3e-06  Score=84.91  Aligned_cols=160  Identities=11%  Similarity=0.110  Sum_probs=105.1

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..+|+++..+..  ..  +..++    . ++..++..    . .      .......+++|+..+++
T Consensus       358 ~~v~~yd~~~~~W~~~~~lp~~r~~--~~--~~~~~----~-~iYv~GG~----~-~------~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        358 NTVESWKPGESKWREEPPLIFPRYN--PC--VVNVN----N-LIYVIGGI----S-K------NDELLKTVECFSLNTNK  417 (534)
T ss_pred             ceEEEEcCCCCceeeCCCcCcCCcc--ce--EEEEC----C-EEEEECCc----C-C------CCcccceEEEEeCCCCe
Confidence            4678999999999999988766532  11  11222    2 34444421    0 0      11224678999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC----ceEEEEEECCCcccccc-CCCCCCCCCceeEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG----MFGITAFDLATDKFSRV-PKPDFDYAHQAMGL  272 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~----~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l  272 (329)
                      |+.++.    +|...     .... .+..+|.+|.+++ .....    ...+..||+.+++|+.+ ++|...   ....+
T Consensus       418 W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r---~~~~~  483 (534)
T PHA03098        418 WSKGSP----LPISH-----YGGC-AIYHDGKIYVIGG-ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR---INASL  483 (534)
T ss_pred             eeecCC----CCccc-----cCce-EEEECCEEEEECC-ccCCCCCcccceEEEecCCCCceeeCCCCCccc---ccceE
Confidence            999887    77665     3333 7889999999987 43211    24599999999999987 344322   23455


Q ss_pred             EEECCcEEEEEc-C--C-EEEEEEeeeCCCccceEEeeccceEEe
Q 037927          273 GVVGGRLCLLAL-G--A-NVELWVMKEYGVKCSWQKHYCLGISIS  313 (329)
Q Consensus       273 ~~~~g~L~~~~~-~--~-~l~vW~l~~~~~~~~W~~~~~~~~~i~  313 (329)
                      ++.+|+|++++. .  . .-.|+.++-.  ...|+.+..+|..++
T Consensus       484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~~~  526 (534)
T PHA03098        484 CIFNNKIYVVGGDKYEYYINEIEVYDDK--TNTWTLFCKFPKVIG  526 (534)
T ss_pred             EEECCEEEEEcCCcCCcccceeEEEeCC--CCEEEecCCCccccc
Confidence            677999999987 1  1 2356777642  356999855555443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.59  E-value=5.7e-06  Score=75.79  Aligned_cols=166  Identities=16%  Similarity=0.166  Sum_probs=99.9

Q ss_pred             ceEEEEc--CcccceeeCCCCCC-CCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcC
Q 037927          118 REIFIWN--PSTGAYTKLPADPD-ATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK  194 (329)
Q Consensus       118 ~~~~V~N--P~T~~~~~LP~~~~-~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~  194 (329)
                      ..+.+++  +.+++|..+|+++. .+.  ....  ...+     =+|.+++...   ...   ..+.......++.|+..
T Consensus        29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~--~~~~--~~~~-----~~iYv~GG~~---~~~---~~~~~~~~~~v~~Yd~~   93 (346)
T TIGR03547        29 TSWYKLDLKKPSKGWQKIADFPGGPRN--QAVA--AAID-----GKLYVFGGIG---KAN---SEGSPQVFDDVYRYDPK   93 (346)
T ss_pred             CeeEEEECCCCCCCceECCCCCCCCcc--cceE--EEEC-----CEEEEEeCCC---CCC---CCCcceecccEEEEECC
Confidence            4677777  47889999998873 332  1111  1222     1455555320   000   00000123578999999


Q ss_pred             CCceEEecccCcccccccccccccCCCcee-EECceeeEEeeccccCC--------------------------------
Q 037927          195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGT-LVNESLHWLTNNQCEFG--------------------------------  241 (329)
Q Consensus       195 t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~--------------------------------  241 (329)
                      +++|+.++.   .+|...     .... .+ .++|.+|.+++ .....                                
T Consensus        94 ~~~W~~~~~---~~p~~~-----~~~~-~~~~~~g~IYviGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (346)
T TIGR03547        94 KNSWQKLDT---RSPVGL-----LGAS-GFSLHNGQAYFTGG-VNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED  163 (346)
T ss_pred             CCEEecCCC---CCCCcc-----ccee-EEEEeCCEEEEEcC-cChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence            999999873   144433     2222 34 68999999987 53110                                


Q ss_pred             ---ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECCcEEEEEc--C---CEEEEEEeeeCCCccceEEeeccce
Q 037927          242 ---MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL--G---ANVELWVMKEYGVKCSWQKHYCLGI  310 (329)
Q Consensus       242 ---~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~--~---~~l~vW~l~~~~~~~~W~~~~~~~~  310 (329)
                         ...+..||+.+++|+.+ ++|....  ....+++.+|+|+++..  .   ....+|.++-...+..|+++..||.
T Consensus       164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~  239 (346)
T TIGR03547       164 YFWNKNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP  239 (346)
T ss_pred             cCccceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence               15799999999999988 5663221  23466788999999986  1   2345666653222457999966643

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.45  E-value=2.2e-05  Score=72.81  Aligned_cols=166  Identities=17%  Similarity=0.156  Sum_probs=97.8

Q ss_pred             ceEEEEcCc--ccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCC
Q 037927          118 REIFIWNPS--TGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKT  195 (329)
Q Consensus       118 ~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t  195 (329)
                      ..++++++.  +++|..+|+++..... ....  ...+    . ++..++...   ...   ..........++.|+..+
T Consensus        50 ~~~~~~d~~~~~~~W~~l~~~p~~~r~-~~~~--v~~~----~-~IYV~GG~~---~~~---~~~~~~~~~~v~~YD~~~  115 (376)
T PRK14131         50 TSWYKLDLNAPSKGWTKIAAFPGGPRE-QAVA--AFID----G-KLYVFGGIG---KTN---SEGSPQVFDDVYKYDPKT  115 (376)
T ss_pred             CeEEEEECCCCCCCeEECCcCCCCCcc-cceE--EEEC----C-EEEEEcCCC---CCC---CCCceeEcccEEEEeCCC
Confidence            456777764  5789999977632211 1111  1222    2 344444210   000   000011235789999999


Q ss_pred             CceEEecccCcccccccccccccCCCceeE-ECceeeEEeeccccC----------------------------------
Q 037927          196 NSWKKVEHSFGSIHCCCEARNLQGRPMGTL-VNESLHWLTNNQCEF----------------------------------  240 (329)
Q Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~----------------------------------  240 (329)
                      ++|+.++.   ..|...     .... .+. .+|.+|.+++ ....                                  
T Consensus       116 n~W~~~~~---~~p~~~-----~~~~-~~~~~~~~IYv~GG-~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (376)
T PRK14131        116 NSWQKLDT---RSPVGL-----AGHV-AVSLHNGKAYITGG-VNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY  185 (376)
T ss_pred             CEEEeCCC---CCCCcc-----cceE-EEEeeCCEEEEECC-CCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence            99999874   124433     2222 344 7999999988 5320                                  


Q ss_pred             -CceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECCcEEEEEc-----CCEEEEEEeeeCCCccceEEeeccc
Q 037927          241 -GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL-----GANVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       241 -~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                       ....+..||+.+++|+.+ ++|....  ....++..+++|+++..     .....+|.++-+..+..|+++..||
T Consensus       186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p  259 (376)
T PRK14131        186 FFNKEVLSYDPSTNQWKNAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP  259 (376)
T ss_pred             CcCceEEEEECCCCeeeECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence             014699999999999987 5664222  23456777999999986     2445677665333346799996554

>PLN02153 epithiospecifier protein

Probab=98.41  E-value=1.9e-05  Score=72.26  Aligned_cols=159  Identities=13%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..++++||.+++|..+|+................++     =+++.++..      .      .......+++|+..+++
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-----~~iyv~GG~------~------~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-----TKLYIFGGR------D------EKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-----CEEEEECCC------C------CCCccCcEEEEECCCCE
Confidence            468999999999999887643221101111111222     245555521      0      11223478999999999


Q ss_pred             eEEecccCccc-----ccccccccccCCCceeEECceeeEEeeccccCC-------ceEEEEEECCCccccccCCCCC-C
Q 037927          198 WKKVEHSFGSI-----HCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-------MFGITAFDLATDKFSRVPKPDF-D  264 (329)
Q Consensus       198 W~~~~~~~~~~-----p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-------~~~i~~fD~~~~~~~~i~lP~~-~  264 (329)
                      |+.++.    +     |...     .... .+..+|.+|.+++ ....+       ...+.+||+.+++|..++.+.. .
T Consensus       113 W~~~~~----~~~~~~p~~R-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~  181 (341)
T PLN02153        113 WTFLTK----LDEEGGPEAR-----TFHS-MASDENHVYVFGG-VSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF  181 (341)
T ss_pred             EEEecc----CCCCCCCCCc-----eeeE-EEEECCEEEEECC-ccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence            999875    4     3333     2222 6788999999988 54211       2368899999999998753321 1


Q ss_pred             CCCceeEEEEECCcEEEEEc-CC-----------EEEEEEeeeCCCccceEEee
Q 037927          265 YAHQAMGLGVVGGRLCLLAL-GA-----------NVELWVMKEYGVKCSWQKHY  306 (329)
Q Consensus       265 ~~~~~~~l~~~~g~L~~~~~-~~-----------~l~vW~l~~~~~~~~W~~~~  306 (329)
                      .......+++.+|+|+++.. ..           .-.++.++-  ...+|+++.
T Consensus       182 ~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~  233 (341)
T PLN02153        182 EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVE  233 (341)
T ss_pred             CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEecc
Confidence            11123456778999999864 10           124566653  235699983

>PLN02153 epithiospecifier protein

Probab=98.40  E-value=2.5e-05  Score=71.45  Aligned_cols=165  Identities=13%  Similarity=0.129  Sum_probs=95.1

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..++++...........+.....   +. |++.++...   ... . .. .......+++|+..+++
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~---~~-~iyv~GG~~---~~~-~-~~-~~~~~~~v~~yd~~~~~  170 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD---EN-HVYVFGGVS---KGG-L-MK-TPERFRTIEAYNIADGK  170 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE---CC-EEEEECCcc---CCC-c-cC-CCcccceEEEEECCCCe
Confidence            478899999999999987521110001111122211   11 355554220   000 0 00 00112468999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC---------CceEEEEEECCCccccccC----CCCCC
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF---------GMFGITAFDLATDKFSRVP----KPDFD  264 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---------~~~~i~~fD~~~~~~~~i~----lP~~~  264 (329)
                      |+.++.    +...... . .... .+.++|.+|.+++ ....         ....+.+||+.+.+|+.+.    +|...
T Consensus       171 W~~l~~----~~~~~~~-r-~~~~-~~~~~~~iyv~GG-~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r  242 (341)
T PLN02153        171 WVQLPD----PGENFEK-R-GGAG-FAVVQGKIWVVYG-FATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR  242 (341)
T ss_pred             EeeCCC----CCCCCCC-C-Ccce-EEEECCeEEEEec-cccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence            999876    3211100 1 2222 6789999999875 3210         0357899999999999874    23322


Q ss_pred             CCCceeEEEEECCcEEEEEc-C-C-----------EEEEEEeeeCCCccceEEe
Q 037927          265 YAHQAMGLGVVGGRLCLLAL-G-A-----------NVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       265 ~~~~~~~l~~~~g~L~~~~~-~-~-----------~l~vW~l~~~~~~~~W~~~  305 (329)
                         .....++.+++|+++.. . .           .-.+|.++-.  ...|+++
T Consensus       243 ---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~  291 (341)
T PLN02153        243 ---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKL  291 (341)
T ss_pred             ---ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEec
Confidence               23455677899999886 1 1           1278998853  4679988

>PLN02193 nitrile-specifier protein

Probab=98.40  E-value=2.2e-05  Score=74.92  Aligned_cols=159  Identities=12%  Similarity=0.156  Sum_probs=98.0

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.+++|..+|+....+...........++    . +++.++..      .      .......+++|+..+++
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~----~-~lYvfGG~------~------~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG----S-TLYVFGGR------D------ASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC----C-EEEEECCC------C------CCCCCccEEEEECCCCE
Confidence            358899999999998876432211001111112222    2 34445421      0      11234578999999999


Q ss_pred             eEEecccCccc---ccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCccccccCCCCCCCC-CceeEE
Q 037927          198 WKKVEHSFGSI---HCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRVPKPDFDYA-HQAMGL  272 (329)
Q Consensus       198 W~~~~~~~~~~---p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i~lP~~~~~-~~~~~l  272 (329)
                      |+.++.    +   |...     .... .+..++.+|..++ .... ....+.+||+.+.+|+.++.|..... .....+
T Consensus       256 W~~l~~----~~~~P~~R-----~~h~-~~~~~~~iYv~GG-~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~  324 (470)
T PLN02193        256 WKLLTP----VEEGPTPR-----SFHS-MAADEENVYVFGG-VSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL  324 (470)
T ss_pred             EEEcCc----CCCCCCCc-----cceE-EEEECCEEEEECC-CCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEE
Confidence            999876    4   3333     2222 6778999999987 5322 14578899999999998765432211 123456


Q ss_pred             EEECCcEEEEEc---CCEEEEEEeeeCCCccceEEee
Q 037927          273 GVVGGRLCLLAL---GANVELWVMKEYGVKCSWQKHY  306 (329)
Q Consensus       273 ~~~~g~L~~~~~---~~~l~vW~l~~~~~~~~W~~~~  306 (329)
                      ++.+|+++++..   ...-.+|+++-.  +..|+++.
T Consensus       325 ~~~~gkiyviGG~~g~~~~dv~~yD~~--t~~W~~~~  359 (470)
T PLN02193        325 EVVQGKVWVVYGFNGCEVDDVHYYDPV--QDKWTQVE  359 (470)
T ss_pred             EEECCcEEEEECCCCCccCceEEEECC--CCEEEEec
Confidence            678999999876   222457777652  45699983

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.28  E-value=5e-05  Score=69.59  Aligned_cols=89  Identities=12%  Similarity=0.184  Sum_probs=58.2

Q ss_pred             ceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEE--ECCCcccccc-CC
Q 037927          186 IQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAF--DLATDKFSRV-PK  260 (329)
Q Consensus       186 ~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~f--D~~~~~~~~i-~l  260 (329)
                      ..+++|+..+++|+.++.    +|...   . .... .+.++|.+|.+++ .....  ...+..|  |+.+++|+.+ ++
T Consensus       168 ~~v~~YDp~t~~W~~~~~----~p~~~---r-~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~y~~~~~~~~W~~~~~m  237 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGE----NPFLG---T-AGSA-IVHKGNKLLLING-EIKPGLRTAEVKQYLFTGGKLEWNKLPPL  237 (346)
T ss_pred             ceEEEEECCCCceeECcc----CCCCc---C-CCce-EEEECCEEEEEee-eeCCCccchheEEEEecCCCceeeecCCC
Confidence            579999999999999987    77532   1 2232 6788999999988 53211  1233334  5577799876 55


Q ss_pred             CCCCC---CC-ceeEEEEECCcEEEEEc
Q 037927          261 PDFDY---AH-QAMGLGVVGGRLCLLAL  284 (329)
Q Consensus       261 P~~~~---~~-~~~~l~~~~g~L~~~~~  284 (329)
                      |....   .. .....++.+|+|+++..
T Consensus       238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG  265 (346)
T TIGR03547       238 PPPKSSSQEGLAGAFAGISNGVLLVAGG  265 (346)
T ss_pred             CCCCCCccccccEEeeeEECCEEEEeec
Confidence            54321   10 12335678999999986

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.28  E-value=0.00011  Score=66.63  Aligned_cols=136  Identities=7%  Similarity=-0.026  Sum_probs=84.1

Q ss_pred             ceEEEEcCcccce----eeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEc
Q 037927          118 REIFIWNPSTGAY----TKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTA  193 (329)
Q Consensus       118 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss  193 (329)
                      ..+..+|+.+++|    ..+|+++..+..  ..  +..++     =++..++...            .......+++|+.
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~--~~--~~~~~-----~~iYv~GG~~------------~~~~~~~v~~yd~  146 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFEN--GS--ACYKD-----GTLYVGGGNR------------NGKPSNKSYLFNL  146 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCccC--ce--EEEEC-----CEEEEEeCcC------------CCccCceEEEEcC
Confidence            4688899999987    678877765432  11  12222     1455554210            1123467899999


Q ss_pred             CCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccC-CCCCCCC---Cce
Q 037927          194 KTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVP-KPDFDYA---HQA  269 (329)
Q Consensus       194 ~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~---~~~  269 (329)
                      .+++|..++.    +|...   . ... ..+.++|.+|.+++ ........+.+||+.+++|+.+. ++.....   ...
T Consensus       147 ~~~~W~~~~~----~p~~~---r-~~~-~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~  216 (323)
T TIGR03548       147 ETQEWFELPD----FPGEP---R-VQP-VCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGA  216 (323)
T ss_pred             CCCCeeECCC----CCCCC---C-Ccc-eEEEECCEEEEEcC-CCCccccceEEEecCCCeeEECCCCCCCCCceeccce
Confidence            9999999886    66422   1 222 25789999999987 53222235789999999998873 3211100   012


Q ss_pred             eEEEEECCcEEEEEc
Q 037927          270 MGLGVVGGRLCLLAL  284 (329)
Q Consensus       270 ~~l~~~~g~L~~~~~  284 (329)
                      ..++..+++|+++..
T Consensus       217 ~~~~~~~~~iyv~GG  231 (323)
T TIGR03548       217 ASIKINESLLLCIGG  231 (323)
T ss_pred             eEEEECCCEEEEECC
Confidence            334455789998876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=98.23  E-value=0.0001  Score=70.33  Aligned_cols=160  Identities=10%  Similarity=0.128  Sum_probs=97.2

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..++++...... .... .+...    .=+++.++..      .      .......+++|+..+++
T Consensus       244 ndv~~yD~~t~~W~~l~~~~~~P~~-R~~h-~~~~~----~~~iYv~GG~------~------~~~~~~~~~~yd~~t~~  305 (470)
T PLN02193        244 NGFYSFDTTTNEWKLLTPVEEGPTP-RSFH-SMAAD----EENVYVFGGV------S------ATARLKTLDSYNIVDKK  305 (470)
T ss_pred             ccEEEEECCCCEEEEcCcCCCCCCC-ccce-EEEEE----CCEEEEECCC------C------CCCCcceEEEEECCCCE
Confidence            5789999999999999876321111 1111 12111    1245555522      0      12234578999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccCC-CCCCCCCceeEEEEEC
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPK-PDFDYAHQAMGLGVVG  276 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~l-P~~~~~~~~~~l~~~~  276 (329)
                      |..++.. ..+|...     ... ..+.++|.+|.+++ ........+.+||+.+++|+.++. +...........+..+
T Consensus       306 W~~~~~~-~~~~~~R-----~~~-~~~~~~gkiyviGG-~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~  377 (470)
T PLN02193        306 WFHCSTP-GDSFSIR-----GGA-GLEVVQGKVWVVYG-FNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG  377 (470)
T ss_pred             EEeCCCC-CCCCCCC-----CCc-EEEEECCcEEEEEC-CCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence            9988641 0122222     122 26778999999887 432224689999999999988732 1111111234566779


Q ss_pred             CcEEEEEc-CC----------EE--EEEEeeeCCCccceEEe
Q 037927          277 GRLCLLAL-GA----------NV--ELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       277 g~L~~~~~-~~----------~l--~vW~l~~~~~~~~W~~~  305 (329)
                      ++|+++.. ..          .+  .+|.++-.  +..|+++
T Consensus       378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~  417 (470)
T PLN02193        378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERL  417 (470)
T ss_pred             CEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEc
Confidence            99999887 11          12  58999863  4579998

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.23  E-value=9.1e-05  Score=67.22  Aligned_cols=154  Identities=11%  Similarity=0.008  Sum_probs=95.2

Q ss_pred             eEEEE-cCccc-ceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927          119 EIFIW-NPSTG-AYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN  196 (329)
Q Consensus       119 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~  196 (329)
                      ++++. +|..+ +|..+++++..+..    ..+..++    . +++.++..      .      .......++.|+..++
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~----~~~~~~~----~-~lyviGG~------~------~~~~~~~v~~~d~~~~   98 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAY----GASVSVE----N-GIYYIGGS------N------SSERFSSVYRITLDES   98 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccc----eEEEEEC----C-EEEEEcCC------C------CCCCceeEEEEEEcCC
Confidence            45555 45433 68888877765431    1112222    2 35455421      0      1223457888999998


Q ss_pred             ce----EEecccCcccccccccccccCCCceeEECceeeEEeecccc-CCceEEEEEECCCcccccc-CCCCCCCCCcee
Q 037927          197 SW----KKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCE-FGMFGITAFDLATDKFSRV-PKPDFDYAHQAM  270 (329)
Q Consensus       197 ~W----~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~  270 (329)
                      .|    +.++.    +|...     .... .++++|.+|.+++ ... .....+..||+.+++|+.+ ++|....  ...
T Consensus        99 ~w~~~~~~~~~----lp~~~-----~~~~-~~~~~~~iYv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~  165 (323)
T TIGR03548        99 KEELICETIGN----LPFTF-----ENGS-ACYKDGTLYVGGG-NRNGKPSNKSYLFNLETQEWFELPDFPGEPR--VQP  165 (323)
T ss_pred             ceeeeeeEcCC----CCcCc-----cCce-EEEECCEEEEEeC-cCCCccCceEEEEcCCCCCeeECCCCCCCCC--Ccc
Confidence            87    55555    67655     2233 6789999999988 532 1246899999999999988 4664322  234


Q ss_pred             EEEEECCcEEEEEc-C--CEEEEEEeeeCCCccceEEeecc
Q 037927          271 GLGVVGGRLCLLAL-G--ANVELWVMKEYGVKCSWQKHYCL  308 (329)
Q Consensus       271 ~l~~~~g~L~~~~~-~--~~l~vW~l~~~~~~~~W~~~~~~  308 (329)
                      ..++.+++|+++.. .  ....++.++-.  +..|+++..|
T Consensus       166 ~~~~~~~~iYv~GG~~~~~~~~~~~yd~~--~~~W~~~~~~  204 (323)
T TIGR03548       166 VCVKLQNELYVFGGGSNIAYTDGYKYSPK--KNQWQKVADP  204 (323)
T ss_pred             eEEEECCEEEEEcCCCCccccceEEEecC--CCeeEECCCC
Confidence            55678999999986 2  22345666532  3569998544

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.02  E-value=0.0002  Score=66.42  Aligned_cols=153  Identities=14%  Similarity=0.099  Sum_probs=89.0

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..+++++..... .  .....++     -+++.++...   ..+      ..........|+.+++.
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~-~--~a~v~~~-----~~iYv~GG~~---~~~------~~~~~~~~~~~~~~~~~  251 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTA-G--SAVVIKG-----NKLWLINGEI---KPG------LRTDAVKQGKFTGNNLK  251 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCC-c--ceEEEEC-----CEEEEEeeeE---CCC------cCChhheEEEecCCCcc
Confidence            4689999999999999877743211 1  1112222     2455555320   000      11112222334667899


Q ss_pred             eEEecccCccccccccccccc--CCCceeEECceeeEEeeccccCC------------------ceEEEEEECCCccccc
Q 037927          198 WKKVEHSFGSIHCCCEARNLQ--GRPMGTLVNESLHWLTNNQCEFG------------------MFGITAFDLATDKFSR  257 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~--~~~~~v~~~G~lywl~~~~~~~~------------------~~~i~~fD~~~~~~~~  257 (329)
                      |..++.    +|.........  .....++++|.+|.+++ .....                  ...+..||+.+++|+.
T Consensus       252 W~~~~~----~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~  326 (376)
T PRK14131        252 WQKLPD----LPPAPGGSSQEGVAGAFAGYSNGVLLVAGG-ANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK  326 (376)
T ss_pred             eeecCC----CCCCCcCCcCCccceEeceeECCEEEEeec-cCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence            999987    66432000000  01114778999999987 43110                  1245689999999987


Q ss_pred             c-CCCCCCCCCceeEEEEECCcEEEEEc-----CCEEEEEEeee
Q 037927          258 V-PKPDFDYAHQAMGLGVVGGRLCLLAL-----GANVELWVMKE  295 (329)
Q Consensus       258 i-~lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l~vW~l~~  295 (329)
                      + ++|....   ....+..+|+|+++..     ...-.|+.++.
T Consensus       327 ~~~lp~~r~---~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~  367 (376)
T PRK14131        327 VGELPQGLA---YGVSVSWNNGVLLIGGETAGGKAVSDVTLLSW  367 (376)
T ss_pred             cCcCCCCcc---ceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEE
Confidence            7 5665432   2356678999999997     23346777764

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.49  E-value=0.0029  Score=54.12  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=71.2

Q ss_pred             cceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-C---------ceEEEEEECCCcc
Q 037927          185 DIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-G---------MFGITAFDLATDK  254 (329)
Q Consensus       185 ~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~---------~~~i~~fD~~~~~  254 (329)
                      ...+++++..|..||.+..  ...|...   .....  ++.++|.+|-.++ .... +         -+.|++||++++.
T Consensus       156 S~d~h~ld~~TmtWr~~~T--kg~Pprw---RDFH~--a~~~~~~MYiFGG-R~D~~gpfHs~~e~Yc~~i~~ld~~T~a  227 (392)
T KOG4693|consen  156 SQDTHVLDFATMTWREMHT--KGDPPRW---RDFHT--ASVIDGMMYIFGG-RSDESGPFHSIHEQYCDTIMALDLATGA  227 (392)
T ss_pred             hccceeEeccceeeeehhc--cCCCchh---hhhhh--hhhccceEEEecc-ccccCCCccchhhhhcceeEEEeccccc
Confidence            3456777778889999976  2233333   11343  6888999999887 5432 1         5689999999999


Q ss_pred             cccc-CCCCCCCCCceeEEEEECCcEEEEEc-CC-----EEEEEEeeeCCCccceEEe
Q 037927          255 FSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL-GA-----NVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       255 ~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~-~~-----~l~vW~l~~~~~~~~W~~~  305 (329)
                      |... +.|.-..........+.||++++... ..     --.+|.++-  ....|+++
T Consensus       228 W~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I  283 (392)
T KOG4693|consen  228 WTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVI  283 (392)
T ss_pred             cccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheee
Confidence            9765 22222222134566788999999987 22     225677664  22347766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=7.2e-05  Score=65.03  Aligned_cols=38  Identities=37%  Similarity=0.665  Sum_probs=35.4

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChh
Q 037927            2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPG   39 (329)
Q Consensus         2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~   39 (329)
                      ..||||+++.||+.|+.|+|.++..|||+|+++.++..
T Consensus        99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            47999999999999999999999999999999988654

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.03  E-value=0.035  Score=50.52  Aligned_cols=172  Identities=15%  Similarity=0.195  Sum_probs=98.6

Q ss_pred             ceEEEEcCcccceeeC--CCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCC
Q 037927          118 REIFIWNPSTGAYTKL--PADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKT  195 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t  195 (329)
                      ..++++|--+.+|+.+  |..|..+..     +.....+.+   .+..++..+..++..      .-.+-....+|+..+
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRss-----hq~va~~s~---~l~~fGGEfaSPnq~------qF~HYkD~W~fd~~t  163 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSS-----HQAVAVPSN---ILWLFGGEFASPNQE------QFHHYKDLWLFDLKT  163 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCcc-----ceeEEeccC---eEEEeccccCCcchh------hhhhhhheeeeeecc
Confidence            5789999999999975  433333321     122223332   233333221111111      111234678999999


Q ss_pred             CceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-----ceEEEEEECCCccccccCCCCCC-CCCce
Q 037927          196 NSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-----MFGITAFDLATDKFSRVPKPDFD-YAHQA  269 (329)
Q Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-----~~~i~~fD~~~~~~~~i~lP~~~-~~~~~  269 (329)
                      +.|..+..  ..-|...   . .+  +.|.....+.-.++ .+...     .+-+.+||+.+=+|+.+..+-.. .....
T Consensus       164 rkweql~~--~g~PS~R---S-GH--RMvawK~~lilFGG-Fhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG  234 (521)
T KOG1230|consen  164 RKWEQLEF--GGGPSPR---S-GH--RMVAWKRQLILFGG-FHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG  234 (521)
T ss_pred             chheeecc--CCCCCCC---c-cc--eeEEeeeeEEEEcc-eecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc
Confidence            99999985  2223222   1 12  25655555555454 33222     56899999999999988654321 11134


Q ss_pred             eEEEEE-CCcEEEEEc-------------CCEEEEEEeeeCC---CccceEEeeccceEEecCC
Q 037927          270 MGLGVV-GGRLCLLAL-------------GANVELWVMKEYG---VKCSWQKHYCLGISISADD  316 (329)
Q Consensus       270 ~~l~~~-~g~L~~~~~-------------~~~l~vW~l~~~~---~~~~W~~~~~~~~~i~~~~  316 (329)
                      +.+.+. .|.+++-+.             ...-.+|.|+...   .+-.|+++    ..+...+
T Consensus       235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv----kp~g~kP  294 (521)
T KOG1230|consen  235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV----KPSGVKP  294 (521)
T ss_pred             ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec----cCCCCCC
Confidence            566666 788887765             3345789997443   23468888    6666655

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.81  E-value=0.11  Score=49.85  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=94.6

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      .++..+|+.|++|..+.+....+.. ........++    ++ |+.++..      +   .  .......++||+..+.+
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~-r~~Hs~~~~g----~~-l~vfGG~------~---~--~~~~~ndl~i~d~~~~~  201 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPP-RAGHSATVVG----TK-LVVFGGI------G---G--TGDSLNDLHIYDLETST  201 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCC-cccceEEEEC----CE-EEEECCc------c---C--cccceeeeeeecccccc
Confidence            4899999999999988766552221 1112222222    33 4444421      0   1  12256789999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCCccccccC-CCCCCCCCceeEEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRVP-KPDFDYAHQAMGLGV  274 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~l~~  274 (329)
                      |.++..    .....   .+......+.+++.++.+.+ .....  ..-+..||+.+.+|..++ ..........+.++.
T Consensus       202 W~~~~~----~g~~P---~pR~gH~~~~~~~~~~v~gG-~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~  273 (482)
T KOG0379|consen  202 WSELDT----QGEAP---SPRYGHAMVVVGNKLLVFGG-GDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV  273 (482)
T ss_pred             ceeccc----CCCCC---CCCCCceEEEECCeEEEEec-cccCCceecceEeeecccceeeeccccCCCCCCcceeeeEE
Confidence            999986    22221   10112215566666666655 33111  568999999999888331 111111113456667


Q ss_pred             ECCcEEEEEc--C----CEEEEEEeeeCCCccceEEe
Q 037927          275 VGGRLCLLAL--G----ANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       275 ~~g~L~~~~~--~----~~l~vW~l~~~~~~~~W~~~  305 (329)
                      .+..+++++.  .    .--++|.|+..  +..|+++
T Consensus       274 ~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~  308 (482)
T KOG0379|consen  274 SGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKV  308 (482)
T ss_pred             ECCEEEEEcCCccccccccccccccccc--ccceeee
Confidence            7888888887  2    23467888764  4679999

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.77  E-value=0.001  Score=58.61  Aligned_cols=43  Identities=30%  Similarity=0.444  Sum_probs=38.3

Q ss_pred             CCCc----HHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHH
Q 037927            2 SNLP----DDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQ   44 (329)
Q Consensus         2 ~~LP----~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~   44 (329)
                      +.||    +++.+.||+.|...+|+.++.|||+|+++++++-.-++.
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL  122 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL  122 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence            5689    999999999999999999999999999999987654443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.54  E-value=0.0015  Score=57.18  Aligned_cols=46  Identities=26%  Similarity=0.497  Sum_probs=39.4

Q ss_pred             CCCCcHHHHHHHHhcCC-----cchhhhhhhchHhhHhhcCChhHHHHHhh
Q 037927            1 MSNLPDDVLIEVLSRLP-----VKSLLRFKCACKQWLSLISDPGFALLQYK   46 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp-----~~~l~r~~~VcK~W~~li~~~~F~~~~~~   46 (329)
                      |+.||||+|.+||.++=     ..+|.++.+|||.|+-...+|.|-+....
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            46799999999998765     48999999999999999999997666543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=95.43  E-value=0.15  Score=46.63  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-------ceEEEEEECCCccccccC
Q 037927          187 QGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-------MFGITAFDLATDKFSRVP  259 (329)
Q Consensus       187 ~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-------~~~i~~fD~~~~~~~~i~  259 (329)
                      ...+|+-+.+.|+.+...  ..|...     ++-+..|+-.|.+|..++ ...++       .--+-.||+.+.+|..+.
T Consensus        99 dLy~Yn~k~~eWkk~~sp--n~P~pR-----sshq~va~~s~~l~~fGG-EfaSPnq~qF~HYkD~W~fd~~trkweql~  170 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSP--NAPPPR-----SSHQAVAVPSNILWLFGG-EFASPNQEQFHHYKDLWLFDLKTRKWEQLE  170 (521)
T ss_pred             eeeEEeccccceeEeccC--CCcCCC-----ccceeEEeccCeEEEecc-ccCCcchhhhhhhhheeeeeeccchheeec
Confidence            456778889999999862  233333     222323444477777777 55443       346889999999999998


Q ss_pred             CCCCCCCCceeEEEEECCcEEEEEc-----CCEE---EEEEeeeCCCccceEEe
Q 037927          260 KPDFDYAHQAMGLGVVGGRLCLLAL-----GANV---ELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       260 lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l---~vW~l~~~~~~~~W~~~  305 (329)
                      ++..........++....+|.+.+.     ...+   .||.++-+  ...|+++
T Consensus       171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Kl  222 (521)
T KOG1230|consen  171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKL  222 (521)
T ss_pred             cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeec
Confidence            8876655445677788888888776     1111   45665532  3569998

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=95.31  E-value=0.24  Score=42.76  Aligned_cols=149  Identities=12%  Similarity=0.082  Sum_probs=83.5

Q ss_pred             CceEEEEcCcccceeeCCCCCCC--CCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcC
Q 037927          117 YREIFIWNPSTGAYTKLPADPDA--TYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK  194 (329)
Q Consensus       117 ~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~  194 (329)
                      +.+..+.|-.|-+|+.+-.-...  ..+ ...  +..+|    ..-.|..+..   .+.+-++.. .......+.+++..
T Consensus       156 S~d~h~ld~~TmtWr~~~Tkg~PprwRD-FH~--a~~~~----~~MYiFGGR~---D~~gpfHs~-~e~Yc~~i~~ld~~  224 (392)
T KOG4693|consen  156 SQDTHVLDFATMTWREMHTKGDPPRWRD-FHT--ASVID----GMMYIFGGRS---DESGPFHSI-HEQYCDTIMALDLA  224 (392)
T ss_pred             hccceeEeccceeeeehhccCCCchhhh-hhh--hhhcc----ceEEEecccc---ccCCCccch-hhhhcceeEEEecc
Confidence            45789999999999986422221  111 111  11122    1111112210   000001111 34456788899999


Q ss_pred             CCceEEecccCcccccccccccccCCCceeEECceeeEEeecccc-CC--ceEEEEEECCCccccccCCCCC-CCCCcee
Q 037927          195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCE-FG--MFGITAFDLATDKFSRVPKPDF-DYAHQAM  270 (329)
Q Consensus       195 t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~--~~~i~~fD~~~~~~~~i~lP~~-~~~~~~~  270 (329)
                      |+.|...+.. ...|...   . .. + ...-||.+|..++ ... .+  -+.+..||+.+..|+.|..-.- .......
T Consensus       225 T~aW~r~p~~-~~~P~GR---R-SH-S-~fvYng~~Y~FGG-Yng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRq  296 (392)
T KOG4693|consen  225 TGAWTRTPEN-TMKPGGR---R-SH-S-TFVYNGKMYMFGG-YNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQ  296 (392)
T ss_pred             ccccccCCCC-CcCCCcc---c-cc-c-eEEEcceEEEecc-cchhhhhhhcceeecccccchheeeeccCCCCCcccce
Confidence            9999877541 1233333   2 22 2 6778999999886 432 11  4589999999999999843211 1111223


Q ss_pred             EEEEECCcEEEEEc
Q 037927          271 GLGVVGGRLCLLAL  284 (329)
Q Consensus       271 ~l~~~~g~L~~~~~  284 (329)
                      .-++.+|++++...
T Consensus       297 C~~v~g~kv~LFGG  310 (392)
T KOG4693|consen  297 CSVVSGGKVYLFGG  310 (392)
T ss_pred             eEEEECCEEEEecC
Confidence            44577899999887

>PF13964 Kelch_6: Kelch motif

Probab=95.27  E-value=0.039  Score=34.84  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             eeEECceeeEEeecccc--CCceEEEEEECCCcccccc-CCC
Q 037927          223 GTLVNESLHWLTNNQCE--FGMFGITAFDLATDKFSRV-PKP  261 (329)
Q Consensus       223 ~v~~~G~lywl~~~~~~--~~~~~i~~fD~~~~~~~~i-~lP  261 (329)
                      .|.++|.+|.+++ ...  .....+..||+++++|+.+ ++|
T Consensus         7 ~v~~~~~iyv~GG-~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    7 AVVVGGKIYVFGG-YDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEECCEEEEECC-CCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            7899999999998 544  2267999999999999988 454

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=95.22  E-value=0.69  Score=44.43  Aligned_cols=160  Identities=13%  Similarity=0.117  Sum_probs=95.5

Q ss_pred             eEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCce
Q 037927          119 EIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSW  198 (329)
Q Consensus       119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W  198 (329)
                      +++|+|-.++.|............ .........+    + +++.++...     .      .......+..|+..++.|
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~-r~g~~~~~~~----~-~l~lfGG~~-----~------~~~~~~~l~~~d~~t~~W  151 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSP-RYGHSLSAVG----D-KLYLFGGTD-----K------KYRNLNELHSLDLSTRTW  151 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCc-ccceeEEEEC----C-eEEEEcccc-----C------CCCChhheEeccCCCCcE
Confidence            599999999888776544443322 1111111112    2 343444210     0      123356889999999999


Q ss_pred             EEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCCccccccCCCCCCCCC-ceeEEEEE
Q 037927          199 KKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRVPKPDFDYAH-QAMGLGVV  275 (329)
Q Consensus       199 ~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i~lP~~~~~~-~~~~l~~~  275 (329)
                      +.....- ++|...     ..-+ .+..+-++|..++ .....  .+.+.+||+++.+|..+......... ....+++.
T Consensus       152 ~~l~~~~-~~P~~r-----~~Hs-~~~~g~~l~vfGG-~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~  223 (482)
T KOG0379|consen  152 SLLSPTG-DPPPPR-----AGHS-ATVVGTKLVVFGG-IGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV  223 (482)
T ss_pred             EEecCcC-CCCCCc-----ccce-EEEECCEEEEECC-ccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE
Confidence            9987621 123333     1222 5666677888777 54332  78999999999999988543322211 34567777


Q ss_pred             CCcEEEEEc-C----CEEEEEEeeeCCCccceEEe
Q 037927          276 GGRLCLLAL-G----ANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       276 ~g~L~~~~~-~----~~l~vW~l~~~~~~~~W~~~  305 (329)
                      +++++++.. .    .-=.+|.|+-..  ..|.++
T Consensus       224 ~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~~~  256 (482)
T KOG0379|consen  224 GNKLLVFGGGDDGDVYLNDVHILDLST--WEWKLL  256 (482)
T ss_pred             CCeEEEEeccccCCceecceEeeeccc--ceeeec
Confidence            888888887 2    222678777533  557755

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=94.90  E-value=1.3  Score=40.62  Aligned_cols=160  Identities=13%  Similarity=0.132  Sum_probs=89.3

Q ss_pred             CeEEEccccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccC
Q 037927           99 MVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQD  178 (329)
Q Consensus        99 ~~~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~  178 (329)
                      .+.+.+..+.-|+.. +.....+|+++.|+....+|.+.....  ..  +.+..   ++.  |.++...   ....   .
T Consensus        68 ~~~F~al~gskIv~~-d~~~~t~vyDt~t~av~~~P~l~~pk~--~p--isv~V---G~~--LY~m~~~---~~~~---~  131 (342)
T PF07893_consen   68 SMDFFALHGSKIVAV-DQSGRTLVYDTDTRAVATGPRLHSPKR--CP--ISVSV---GDK--LYAMDRS---PFPE---P  131 (342)
T ss_pred             eeEEEEecCCeEEEE-cCCCCeEEEECCCCeEeccCCCCCCCc--ce--EEEEe---CCe--EEEeecc---Cccc---c
Confidence            444555455566665 566789999999999999998765432  11  22222   122  5556532   0000   0


Q ss_pred             CCCCcccceEEEEEc----------CCCceEEecccCccccccccccccc---CCCceeEECceeeEEeeccccCCceEE
Q 037927          179 DNSRCIDIQGIVFTA----------KTNSWKKVEHSFGSIHCCCEARNLQ---GRPMGTLVNESLHWLTNNQCEFGMFGI  245 (329)
Q Consensus       179 ~~~~~~~~~~~vyss----------~t~~W~~~~~~~~~~p~~~~~~~~~---~~~~~v~~~G~lywl~~~~~~~~~~~i  245 (329)
                      . .......+|+++-          ++.+|+.++.    .|+...... .   -.+.+|+ +|.--|+.. ...  ...-
T Consensus       132 ~-~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~----PPf~~~~~~-~~~~i~sYavv-~g~~I~vS~-~~~--~~GT  201 (342)
T PF07893_consen  132 A-GRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP----PPFVRDRRY-SDYRITSYAVV-DGRTIFVSV-NGR--RWGT  201 (342)
T ss_pred             c-cCccceeEEEeccccccccccCCCcceEEcCCC----CCccccCCc-ccceEEEEEEe-cCCeEEEEe-cCC--ceEE
Confidence            0 0000116666632          2347888776    564441000 0   1223566 898888866 321  1268


Q ss_pred             EEEECCCcccccc---CCCCCCCCC----ceeEEEEE--C--CcEEEEEc
Q 037927          246 TAFDLATDKFSRV---PKPDFDYAH----QAMGLGVV--G--GRLCLLAL  284 (329)
Q Consensus       246 ~~fD~~~~~~~~i---~lP~~~~~~----~~~~l~~~--~--g~L~~~~~  284 (329)
                      .+||+++.+|+..   .||......    ....++.+  +  +.||....
T Consensus       202 ysfDt~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv  251 (342)
T PF07893_consen  202 YSFDTESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDV  251 (342)
T ss_pred             EEEEcCCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEec
Confidence            9999999999988   788765443    23344432  3  37877776

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=94.56  E-value=4.9  Score=39.12  Aligned_cols=42  Identities=29%  Similarity=0.549  Sum_probs=37.7

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHH
Q 037927            1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFAL   42 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~   42 (329)
                      +..||.++...||..|+.+++.+++.||+.|+.+..+.....
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            457999999999999999999999999999999999766544

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=94.41  E-value=0.094  Score=32.40  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             eeEECceeeEEeecccc-C-CceEEEEEECCCcccccc-CCC
Q 037927          223 GTLVNESLHWLTNNQCE-F-GMFGITAFDLATDKFSRV-PKP  261 (329)
Q Consensus       223 ~v~~~G~lywl~~~~~~-~-~~~~i~~fD~~~~~~~~i-~lP  261 (329)
                      .+.++|.+|.+++ ... . ....+..||+.+++|..+ ++|
T Consensus         7 ~~~~~~~iyv~GG-~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    7 AVVVGNKIYVIGG-YDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEETTEEEEEEE-BESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEECCEEEEEee-ecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            7899999999998 654 2 278999999999999876 444

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=94.29  E-value=0.27  Score=38.16  Aligned_cols=70  Identities=27%  Similarity=0.486  Sum_probs=50.6

Q ss_pred             eEEEEEECCCc--cccccCCCCCCCCC-----------ceeEEEEECCcEEEEEc-----------CCEEEEEEeeeC-C
Q 037927          243 FGITAFDLATD--KFSRVPKPDFDYAH-----------QAMGLGVVGGRLCLLAL-----------GANVELWVMKEY-G  297 (329)
Q Consensus       243 ~~i~~fD~~~~--~~~~i~lP~~~~~~-----------~~~~l~~~~g~L~~~~~-----------~~~l~vW~l~~~-~  297 (329)
                      ..|+.+|+-.+  .++.++||......           ....+++.+|+|-++..           +.++.+|.|... +
T Consensus         6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~   85 (131)
T PF07762_consen    6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG   85 (131)
T ss_pred             CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence            46788888865  66778888755221           23467778999988887           226899999985 2


Q ss_pred             CccceEEeeccceEEecCC
Q 037927          298 VKCSWQKHYCLGISISADD  316 (329)
Q Consensus       298 ~~~~W~~~~~~~~~i~~~~  316 (329)
                      ....|++.    +++++.+
T Consensus        86 ~~~~W~~d----~~v~~~d  100 (131)
T PF07762_consen   86 SSWEWKKD----CEVDLSD  100 (131)
T ss_pred             CCCCEEEe----EEEEhhh
Confidence            24679999    9888755

>PF13964 Kelch_6: Kelch motif

Probab=94.28  E-value=0.099  Score=32.93  Aligned_cols=37  Identities=16%  Similarity=0.394  Sum_probs=26.6

Q ss_pred             CeEEEccccccEEEEEcCCceEEEEcCcccceeeCCCCCCC
Q 037927           99 MVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDA  139 (329)
Q Consensus        99 ~~~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~  139 (329)
                      .+++++..++.   . .....+.++||.|++|..+|+++..
T Consensus        13 ~iyv~GG~~~~---~-~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen   13 KIYVFGGYDNS---G-KYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             EEEEECCCCCC---C-CccccEEEEcCCCCcEEECCCCCCC
Confidence            34555544443   1 3457899999999999999988754

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.06  E-value=0.64  Score=41.86  Aligned_cols=120  Identities=17%  Similarity=0.211  Sum_probs=81.8

Q ss_pred             cceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECc-eeeEEeeccccC-----------------------
Q 037927          185 DIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNE-SLHWLTNNQCEF-----------------------  240 (329)
Q Consensus       185 ~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~-----------------------  240 (329)
                      ...+..|++.+++|..++.   ..|...     .+.+ .+..++ .+|+.++ ....                       
T Consensus       112 ~nd~Y~y~p~~nsW~kl~t---~sP~gl-----~G~~-~~~~~~~~i~f~GG-vn~~if~~yf~dv~~a~~d~~~~~~i~  181 (381)
T COG3055         112 FNDAYRYDPSTNSWHKLDT---RSPTGL-----VGAS-TFSLNGTKIYFFGG-VNQNIFNGYFEDVGAAGKDKEAVDKII  181 (381)
T ss_pred             eeeeEEecCCCChhheecc---cccccc-----ccce-eEecCCceEEEEcc-ccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence            4567888999999999986   356655     4444 455555 7777764 3211                       


Q ss_pred             ----C--------ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECCcEEEEEc-----CCEEEEEEeeeCCCccce
Q 037927          241 ----G--------MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL-----GANVELWVMKEYGVKCSW  302 (329)
Q Consensus       241 ----~--------~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l~vW~l~~~~~~~~W  302 (329)
                          +        ...+++||+.+++|+.. ..|.-....  ..++..+++|.++..     -++..+|+.+-.+.+..|
T Consensus       182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w  259 (381)
T COG3055         182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG--SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW  259 (381)
T ss_pred             HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC--cceeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence                0        44789999999999988 577665431  233344667888877     456677777655556789


Q ss_pred             EEeeccceEEecCC
Q 037927          303 QKHYCLGISISADD  316 (329)
Q Consensus       303 ~~~~~~~~~i~~~~  316 (329)
                      .+...+|..+.-..
T Consensus       260 ~~l~~lp~~~~~~~  273 (381)
T COG3055         260 LKLSDLPAPIGSNK  273 (381)
T ss_pred             eeccCCCCCCCCCc
Confidence            99977777776554

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=91.85  E-value=3.8  Score=35.64  Aligned_cols=85  Identities=20%  Similarity=0.279  Sum_probs=61.6

Q ss_pred             cccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccc-ccCCCCCCCCC---------ceeEEEEECC
Q 037927          208 IHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFS-RVPKPDFDYAH---------QAMGLGVVGG  277 (329)
Q Consensus       208 ~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~---------~~~~l~~~~g  277 (329)
                      +|...     .+.. .|+.||.+|+... .    ...|+.||+.+++-. ...||.....+         ....+++-+.
T Consensus        65 Lp~~~-----~GtG-~vVYngslYY~~~-~----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~  133 (250)
T PF02191_consen   65 LPYPW-----QGTG-HVVYNGSLYYNKY-N----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDEN  133 (250)
T ss_pred             Eecee-----ccCC-eEEECCcEEEEec-C----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCC
Confidence            67655     4444 7889999999776 4    679999999999888 67888765431         3477888888


Q ss_pred             cEEEEEc----CCEEEEEEeeeC--CCccceE
Q 037927          278 RLCLLAL----GANVELWVMKEY--GVKCSWQ  303 (329)
Q Consensus       278 ~L~~~~~----~~~l~vW~l~~~--~~~~~W~  303 (329)
                      .|.++-.    ...+.|-.|+..  .....|.
T Consensus       134 GLWvIYat~~~~g~ivvskld~~tL~v~~tw~  165 (250)
T PF02191_consen  134 GLWVIYATEDNNGNIVVSKLDPETLSVEQTWN  165 (250)
T ss_pred             CEEEEEecCCCCCcEEEEeeCcccCceEEEEE
Confidence            8988877    335888888753  2334564

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=91.69  E-value=0.4  Score=29.97  Aligned_cols=36  Identities=8%  Similarity=0.170  Sum_probs=29.4

Q ss_pred             eeEECceeeEEeecc--cc--CCceEEEEEECCCccccccC
Q 037927          223 GTLVNESLHWLTNNQ--CE--FGMFGITAFDLATDKFSRVP  259 (329)
Q Consensus       223 ~v~~~G~lywl~~~~--~~--~~~~~i~~fD~~~~~~~~i~  259 (329)
                      .+.++|++|..++ .  ..  .....+..||+++.+|..+.
T Consensus         7 ~~~~~~kiyv~GG-~~~~~~~~~~~~v~~~d~~t~~W~~~~   46 (49)
T PF07646_consen    7 AVVLDGKIYVFGG-YGTDNGGSSSNDVWVFDTETNQWTELS   46 (49)
T ss_pred             EEEECCEEEEECC-cccCCCCcccceeEEEECCCCEEeecC
Confidence            7899999999998 6  11  12678999999999998774

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>smart00612 Kelch Kelch domain

Probab=91.63  E-value=0.34  Score=29.44  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=20.6

Q ss_pred             ccceEEEEEcCCCceEEecccCccccccc
Q 037927          184 IDIQGIVFTAKTNSWKKVEHSFGSIHCCC  212 (329)
Q Consensus       184 ~~~~~~vyss~t~~W~~~~~~~~~~p~~~  212 (329)
                      ....+++|+.+++.|+..+.    ||...
T Consensus        13 ~~~~v~~yd~~~~~W~~~~~----~~~~r   37 (47)
T smart00612       13 RLKSVEVYDPETNKWTPLPS----MPTPR   37 (47)
T ss_pred             eeeeEEEECCCCCeEccCCC----CCCcc
Confidence            35678999999999999887    77655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.21  E-value=0.19  Score=46.20  Aligned_cols=37  Identities=38%  Similarity=0.613  Sum_probs=34.2

Q ss_pred             CCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChh
Q 037927            3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPG   39 (329)
Q Consensus         3 ~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~   39 (329)
                      .||.+++..||+-|..++++|++.+|+.|+-+..+..
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~  110 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS  110 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence            6999999999999999999999999999999887643

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=88.59  E-value=0.8  Score=28.46  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             eeEE-CceeeEEeeccccC--CceEEEEEECCCcccccc
Q 037927          223 GTLV-NESLHWLTNNQCEF--GMFGITAFDLATDKFSRV  258 (329)
Q Consensus       223 ~v~~-~G~lywl~~~~~~~--~~~~i~~fD~~~~~~~~i  258 (329)
                      .+.+ ++.+|..++ ....  ....+..||+++++|+.+
T Consensus         7 ~~~~~~~~i~v~GG-~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    7 AVSIGDNSIYVFGG-RDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             EEEE-TTEEEEE---EEE-TEE---EEEEETTTTEEEE-
T ss_pred             EEEEeCCeEEEECC-CCCCCcccCCEEEEECCCCEEEEC
Confidence            5566 588888887 5442  256889999999999988

>smart00284 OLF Olfactomedin-like domains

Probab=88.36  E-value=4.1  Score=35.43  Aligned_cols=86  Identities=17%  Similarity=0.256  Sum_probs=58.5

Q ss_pred             cccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCCCCCCC---------CceeEEEEECC
Q 037927          208 IHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKPDFDYA---------HQAMGLGVVGG  277 (329)
Q Consensus       208 ~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~---------~~~~~l~~~~g  277 (329)
                      +|...     .+.. .|+.||.+|+... .    ...|+-||+.+++-... .||...-.         ...+.+++-+.
T Consensus        70 Lp~~~-----~GtG-~VVYngslYY~~~-~----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~  138 (255)
T smart00284       70 LPHAG-----QGTG-VVVYNGSLYFNKF-N----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN  138 (255)
T ss_pred             CCCcc-----cccc-EEEECceEEEEec-C----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC
Confidence            67655     3444 8999999999665 3    46899999999988644 57753211         13477888888


Q ss_pred             cEEEEEc----CCEEEEEEeeeC--CCccceEE
Q 037927          278 RLCLLAL----GANVELWVMKEY--GVKCSWQK  304 (329)
Q Consensus       278 ~L~~~~~----~~~l~vW~l~~~--~~~~~W~~  304 (329)
                      .|.++-.    ...|.|-.|+..  .....|.-
T Consensus       139 GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T  171 (255)
T smart00284      139 GLWVIYATEQNAGKIVISKLNPATLTIENTWIT  171 (255)
T ss_pred             ceEEEEeccCCCCCEEEEeeCcccceEEEEEEc
Confidence            8888866    456777777643  22344553

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=86.62  E-value=2  Score=26.22  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             CcccceEEEEEcCCCceEEecc
Q 037927          182 RCIDIQGIVFTAKTNSWKKVEH  203 (329)
Q Consensus       182 ~~~~~~~~vyss~t~~W~~~~~  203 (329)
                      ......+++|+..+++|+.++.
T Consensus        24 ~~~~~~v~~yd~~~~~W~~~~~   45 (47)
T PF01344_consen   24 NQPTNSVEVYDPETNTWEELPP   45 (47)
T ss_dssp             SSBEEEEEEEETTTTEEEEEEE
T ss_pred             CceeeeEEEEeCCCCEEEEcCC
Confidence            4567899999999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=86.27  E-value=11  Score=35.95  Aligned_cols=160  Identities=15%  Similarity=0.246  Sum_probs=78.8

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      +++.|+|-+|++|.. |........ ....++|.+|    .-++++++..             ..-+.+.-+.|.+....
T Consensus        57 DELHvYNTatnqWf~-PavrGDiPp-gcAA~Gfvcd----GtrilvFGGM-------------vEYGkYsNdLYELQasR  117 (830)
T KOG4152|consen   57 DELHVYNTATNQWFA-PAVRGDIPP-GCAAFGFVCD----GTRILVFGGM-------------VEYGKYSNDLYELQASR  117 (830)
T ss_pred             hhhhhhccccceeec-chhcCCCCC-chhhcceEec----CceEEEEccE-------------eeeccccchHHHhhhhh
Confidence            578999999999974 333222211 2234455555    3355555533             23356677788877665


Q ss_pred             --eEEeccc---CcccccccccccccCCCceeEECceeeEEeeccccCC------------ceEEEEEECCCc--ccccc
Q 037927          198 --WKKVEHS---FGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG------------MFGITAFDLATD--KFSRV  258 (329)
Q Consensus       198 --W~~~~~~---~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~------------~~~i~~fD~~~~--~~~~i  258 (329)
                        |+.+...   .-.+|+..   . .+ + -++.+.+.|..++ -.++.            +.+++-+-....  -|...
T Consensus       118 WeWkrlkp~~p~nG~pPCPR---l-GH-S-Fsl~gnKcYlFGG-LaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip  190 (830)
T KOG4152|consen  118 WEWKRLKPKTPKNGPPPCPR---L-GH-S-FSLVGNKCYLFGG-LANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIP  190 (830)
T ss_pred             hhHhhcCCCCCCCCCCCCCc---c-Cc-e-eEEeccEeEEecc-ccccccCcccccchhhcceEEEEeccCCceEEEecc
Confidence              5555320   00112221   1 11 1 4556677887775 33221            334444443443  22211


Q ss_pred             ----CCCCCCCCCceeEEEEEC-Cc--EEEEEc--CCEE-EEEEeeeCCCccceEEe
Q 037927          259 ----PKPDFDYAHQAMGLGVVG-GR--LCLLAL--GANV-ELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       259 ----~lP~~~~~~~~~~l~~~~-g~--L~~~~~--~~~l-~vW~l~~~~~~~~W~~~  305 (329)
                          .+|...+.+....-.+-| ++  +++...  +.++ .+|.|+-  +...|.|.
T Consensus       191 ~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl--~Tl~W~kp  245 (830)
T KOG4152|consen  191 ITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDL--DTLTWNKP  245 (830)
T ss_pred             cccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEec--ceeecccc
Confidence                344433332111222333 23  344333  4454 6899986  34679986

>PLN02772 guanylate kinase

Probab=86.04  E-value=4.3  Score=37.64  Aligned_cols=71  Identities=10%  Similarity=0.148  Sum_probs=51.5

Q ss_pred             eeEECceeeEEeeccccCC--ceEEEEEECCCccccccC----CCCCCCCCceeEEEEECCcEEEEEc--CCEEEEEEee
Q 037927          223 GTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRVP----KPDFDYAHQAMGLGVVGGRLCLLAL--GANVELWVMK  294 (329)
Q Consensus       223 ~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~l~~~~g~L~~~~~--~~~l~vW~l~  294 (329)
                      .|.++.++|..++ ....+  ...+..||..+.+|+...    .|....  .+-.....+++|.++..  ...-.+|-|+
T Consensus        30 av~igdk~yv~GG-~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~--GhSa~v~~~~rilv~~~~~~~~~~~w~l~  106 (398)
T PLN02772         30 SVTIGDKTYVIGG-NHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK--GYSAVVLNKDRILVIKKGSAPDDSIWFLE  106 (398)
T ss_pred             eEEECCEEEEEcc-cCCCccccceEEEEECCCCcEecccccCCCCCCCC--cceEEEECCceEEEEeCCCCCccceEEEE
Confidence            8899999999987 44321  568999999999998652    233332  22344455799999988  7778999997


Q ss_pred             eC
Q 037927          295 EY  296 (329)
Q Consensus       295 ~~  296 (329)
                      -+
T Consensus       107 ~~  108 (398)
T PLN02772        107 VD  108 (398)
T ss_pred             cC
Confidence            54

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=85.59  E-value=23  Score=32.35  Aligned_cols=85  Identities=19%  Similarity=0.344  Sum_probs=52.0

Q ss_pred             eEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccc-----------
Q 037927          187 QGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKF-----------  255 (329)
Q Consensus       187 ~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~-----------  255 (329)
                      ...-|+-.+..|+....  ..+|+.       +.  +.|+..-=-|++- ...+....|-++|+.+..-           
T Consensus       200 GTysfDt~~~~W~~~Gd--W~LPF~-------G~--a~y~~el~~W~Gl-s~~~~~~~lca~dv~~~~~~~~pp~~~~~~  267 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGD--WMLPFH-------GQ--AEYVPELDLWFGL-SSDGGGGHLCACDVSSADSASPPPEWKLTW  267 (342)
T ss_pred             EEEEEEcCCcceeeccc--eecCcC-------Cc--cEECCCcCeEEEe-ccCCCCcEEEEEeccccccCCCCCcceecc
Confidence            35556666789999987  344442       22  6777666678887 6543235899999887322           


Q ss_pred             cccCCCCCCCCCceeEEEEE-CCcEEEEEc
Q 037927          256 SRVPKPDFDYAHQAMGLGVV-GGRLCLLAL  284 (329)
Q Consensus       256 ~~i~lP~~~~~~~~~~l~~~-~g~L~~~~~  284 (329)
                      ..+..|.. .......|+.+ +|+.|++..
T Consensus       268 ~~l~~~~~-~~~~~~~Lv~lG~grFCi~~~  296 (342)
T PF07893_consen  268 EELFPPEE-WRHVGATLVYLGSGRFCIVEF  296 (342)
T ss_pred             cccccccc-ccccCceEEECCCCCEEEEEE
Confidence            22233322 11134567766 588999885

>smart00612 Kelch Kelch domain

Probab=83.81  E-value=3.9  Score=24.50  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=17.2

Q ss_pred             ceEEEEEECCCcccccc-CCCCC
Q 037927          242 MFGITAFDLATDKFSRV-PKPDF  263 (329)
Q Consensus       242 ~~~i~~fD~~~~~~~~i-~lP~~  263 (329)
                      ...+..||+.+.+|+.+ ++|..
T Consensus        14 ~~~v~~yd~~~~~W~~~~~~~~~   36 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPSMPTP   36 (47)
T ss_pred             eeeEEEECCCCCeEccCCCCCCc
Confidence            56789999999999877 45443

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=82.18  E-value=3.9  Score=25.34  Aligned_cols=38  Identities=16%  Similarity=0.434  Sum_probs=27.2

Q ss_pred             eEEEEECCcEEEEEc-------CCEEEEEEeeeCCCccceEEeeccc
Q 037927          270 MGLGVVGGRLCLLAL-------GANVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       270 ~~l~~~~g~L~~~~~-------~~~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      ...++.+++|+++..       ...-.+|.++..  +..|+++.+||
T Consensus         5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~g   49 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPMG   49 (49)
T ss_pred             eEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCCC
Confidence            355678999999876       445578888863  46799985554

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=80.72  E-value=3.1  Score=39.38  Aligned_cols=143  Identities=8%  Similarity=-0.043  Sum_probs=85.1

Q ss_pred             EEEEcCcccceeeCCCCCCCCCC-----CCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcC
Q 037927          120 IFIWNPSTGAYTKLPADPDATYD-----YDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK  194 (329)
Q Consensus       120 ~~V~NP~T~~~~~LP~~~~~~~~-----~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~  194 (329)
                      +..--|.|-.|.++|+.......     .....+-+.+++.++.-.+.....              +......+.+|+-+
T Consensus       231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd--------------G~~~l~DFW~Y~v~  296 (723)
T KOG2437|consen  231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD--------------GTQDLADFWAYSVK  296 (723)
T ss_pred             hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc--------------cchhHHHHHhhcCC
Confidence            44556788889998887743211     234445567777666544443331              34455678899999


Q ss_pred             CCceEEecccCcccccccccccccCCCceeEEC--ceeeEEeeccccC-------CceEEEEEECCCccccccCCCCCCC
Q 037927          195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVN--ESLHWLTNNQCEF-------GMFGITAFDLATDKFSRVPKPDFDY  265 (329)
Q Consensus       195 t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~~-------~~~~i~~fD~~~~~~~~i~lP~~~~  265 (329)
                      .+.|..+... ...|-..   . +++  .|.--  -++|.++. .-..       ...-+-.||..+..|..+..-....
T Consensus       297 e~~W~~iN~~-t~~PG~R---s-CHR--MVid~S~~KLYLlG~-Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~d  368 (723)
T KOG2437|consen  297 ENQWTCINRD-TEGPGAR---S-CHR--MVIDISRRKLYLLGR-YLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAAD  368 (723)
T ss_pred             cceeEEeecC-CCCCcch---h-hhh--hhhhhhHhHHhhhhh-ccccccccccccccceEEEecCCceeEEeccccccc
Confidence            9999998751 1133322   1 222  33322  36777664 3221       2668999999999999886544422


Q ss_pred             CC----ceeEEEEECCc--EEEEEc
Q 037927          266 AH----QAMGLGVVGGR--LCLLAL  284 (329)
Q Consensus       266 ~~----~~~~l~~~~g~--L~~~~~  284 (329)
                      .+    +...+++.+++  +|+.+.
T Consensus       369 GGP~~vfDHqM~Vd~~k~~iyVfGG  393 (723)
T KOG2437|consen  369 GGPKLVFDHQMCVDSEKHMIYVFGG  393 (723)
T ss_pred             CCcceeecceeeEecCcceEEEecC
Confidence            21    34456666555  777765

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=80.58  E-value=32  Score=30.37  Aligned_cols=110  Identities=18%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             CceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927          117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN  196 (329)
Q Consensus       117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~  196 (329)
                      ...+...||+++.-..+|.+......  ..  ..+.|+..    -+++.                ......+..|+..+.
T Consensus       209 gnaiaridp~~~~aev~p~P~~~~~g--sR--riwsdpig----~~wit----------------twg~g~l~rfdPs~~  264 (353)
T COG4257         209 GNAIARIDPFAGHAEVVPQPNALKAG--SR--RIWSDPIG----RAWIT----------------TWGTGSLHRFDPSVT  264 (353)
T ss_pred             ccceEEcccccCCcceecCCCccccc--cc--ccccCccC----cEEEe----------------ccCCceeeEeCcccc
Confidence            45677889999977788887764322  11  23434432    23333                234667888999888


Q ss_pred             ceEEecccCcccccccccccccCCCceeEECce-eeEEeeccccCCceEEEEEECCCccccccCCCCCCC
Q 037927          197 SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNES-LHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDY  265 (329)
Q Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~  265 (329)
                      +|++-+     +|-.-      .....+++|.. .-|+.. -.   .+.|.-||+++++|+++++|....
T Consensus       265 sW~eyp-----LPgs~------arpys~rVD~~grVW~se-a~---agai~rfdpeta~ftv~p~pr~n~  319 (353)
T COG4257         265 SWIEYP-----LPGSK------ARPYSMRVDRHGRVWLSE-AD---AGAIGRFDPETARFTVLPIPRPNS  319 (353)
T ss_pred             cceeee-----CCCCC------CCcceeeeccCCcEEeec-cc---cCceeecCcccceEEEecCCCCCC
Confidence            998866     34322      11225555532 345543 22   679999999999999999987764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-08
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	8e-08
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-06
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 2   SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPP-KILLSK 60
            +LPD++L+ + S L +  LL+    CK+W  L SD               P     L  
Sbjct: 10  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS 69

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHF--PFIRPDSMVRFIGSCHGLICLALDN 116
           + + +   P    D           +  +      I   ++   +  C  L  L+L+ 
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 51.9 bits (123), Expect = 8e-08
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 25/219 (11%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRF-KCACKQWLSLISDPGFALLQYKRTARNSPPKILLS 59
           ++ LP+ +L+ VL+ LP   L++  +  C +W  L+      LL+ ++     P      
Sbjct: 51  LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE-GLVPEGSADE 109

Query: 60  KRSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIR--PDSMVRFIGSCHGLICLALDNY 117
           +R  + +   L     +                         V  +   +G+     D+ 
Sbjct: 110 ERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVEFTQDDSV 169

Query: 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDN-- 175
           ++ F  +       ++          D+   G+ ++   +  +     ++    R D   
Sbjct: 170 KKYFASSFEWCRKAQVI---------DLQAEGY-WEELLDTTQPAIVVKDWYSGRTDAGS 219

Query: 176 -------LQDDNSRCIDI--QGIVFTAKTNSWKKVEHSF 205
                  L  +N   +     G V   +  SW ++ H+F
Sbjct: 220 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTF 258

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 2  SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDP 38
           +LPD++L+ + S L +  LL+    CK+W  L SD 
Sbjct: 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 1   MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
           ++ LP DV + +LS L    L +       W   + DP   +L      R+ P    +  
Sbjct: 5   LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP---ILWRYFLLRDLPSWSSVDW 61

Query: 61  RSLYSKDSPLRSF-DCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGL 109
           +SL   +   +   + +  +  D  A+ R+  P++   +  RF     GL
Sbjct: 62  KSLPDLEILKKPISEVTDGAFFDYMAVYRMCCPYLIIQNEPRFAMFGPGL 111

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 9/116 (7%)

Query: 2   SNLPDDVLIEVLSRLPVKS-LLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
            + P++VL  V S + +          CK W  +       +        N      +S 
Sbjct: 7   LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKV-----FIGNCYA---VSP 58

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDN 116
            ++  +   +RS +           L    +       +     S   L  + L  
Sbjct: 59  ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR 114

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 9/116 (7%)

Query: 2   SNLPDDVLIEVLSRLPVKS-LLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSK 60
               DDV+ +V++ +            C++W  + S+         R           + 
Sbjct: 14  VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSET--------REHVTMALCYTATP 65

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGSCHGLICLALDN 116
             L  +   LRS             L   ++       +     +   L  +    
Sbjct: 66  DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRR 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 21/126 (16%), Positives = 31/126 (24%), Gaps = 46/126 (36%)

Query: 4   LPDDVLI--EVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKIL--LS 59
            P    I   +LS +              W  +I                    ++  L 
Sbjct: 381 FPPSAHIPTILLSLI--------------WFDVIKS--------------DVMVVVNKLH 412

Query: 60  KRSLYSKDSPLRSFDCSTTSLHD--------QRALTRLHFPFIRPDSMVRFIGSCHGLIC 111
           K SL  K         ST S+                LH   +   ++ +       LI 
Sbjct: 413 KYSLVEKQP-----KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIP 466

Query: 112 LALDNY 117
             LD Y
Sbjct: 467 PYLDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.11
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.02
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.95
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.94
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.93
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.92
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.81
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.76
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.73
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.66
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.6
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.56
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.46
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.42
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.19
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.66
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.53
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.67
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	84.7

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.11  E-value=5.2e-11  Score=76.74  Aligned_cols=41  Identities=34%  Similarity=0.668  Sum_probs=38.3

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHH
Q 037927            1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFA   41 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~   41 (329)
                      ++.||+|++.+||++||++++.++++|||+|+.++.++.|-
T Consensus         9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            46899999999999999999999999999999999988763

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.02  E-value=1.6e-10  Score=100.83  Aligned_cols=48  Identities=27%  Similarity=0.652  Sum_probs=45.4

Q ss_pred             CCCCcHHHHHHHHhcCCcchhh-hhhhchHhhHhhcCChhHHHHHhhhc
Q 037927            1 MSNLPDDVLIEVLSRLPVKSLL-RFKCACKQWLSLISDPGFALLQYKRT   48 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp~~~l~-r~~~VcK~W~~li~~~~F~~~~~~~~   48 (329)
                      |+.||+||+++||+|||+++|+ ||++|||+|+++++++.|.+.+..+.
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            4689999999999999999999 99999999999999999999998775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.95  E-value=5.8e-08  Score=85.55  Aligned_cols=155  Identities=13%  Similarity=0.135  Sum_probs=106.2

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..+|+++..+..  ...  ..++    . +++.++..      .      .......+++|+..+++
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~iyv~GG~------~------~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRST--LGA--AVLN----G-LLYAVGGF------D------GSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS--CEE--EEET----T-EEEEEEEE------C------SSCEEEEEEEEETTTTE
T ss_pred             cceEEECCCCCceeeCCCCCccccc--eEE--EEEC----C-EEEEEcCC------C------CCccCceEEEEeCCCCe
Confidence            5799999999999999988776542  111  1222    2 34444432      0      22345679999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC---ceEEEEEECCCcccccc-CCCCCCCCCceeEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG---MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLG  273 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~---~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~  273 (329)
                      |+.++.    +|...     .... .+.++|.+|.+++ .....   ...+..||+.+++|+.+ ++|...   .....+
T Consensus       136 W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~  201 (302)
T 2xn4_A          136 WFHVAP----MNTRR-----SSVG-VGVVGGLLYAVGG-YDVASRQCLSTVECYNATTNEWTYIAEMSTRR---SGAGVG  201 (302)
T ss_dssp             EEEECC----CSSCC-----BSCE-EEEETTEEEEECC-EETTTTEECCCEEEEETTTTEEEEECCCSSCC---BSCEEE
T ss_pred             EeecCC----CCCcc-----cCce-EEEECCEEEEEeC-CCCCCCccccEEEEEeCCCCcEEECCCCcccc---ccccEE
Confidence            999987    77655     3333 6788999999987 53321   45799999999999988 555433   234667


Q ss_pred             EECCcEEEEEc--C--CEEEEEEeeeCCCccceEEeeccc
Q 037927          274 VVGGRLCLLAL--G--ANVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       274 ~~~g~L~~~~~--~--~~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      +.+|+|+++..  .  ..-.+|.++-.  ...|+++..||
T Consensus       202 ~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~  239 (302)
T 2xn4_A          202 VLNNLLYAVGGHDGPLVRKSVEVYDPT--TNAWRQVADMN  239 (302)
T ss_dssp             EETTEEEEECCBSSSSBCCCEEEEETT--TTEEEEECCCS
T ss_pred             EECCEEEEECCCCCCcccceEEEEeCC--CCCEeeCCCCC
Confidence            78999999986  1  12357777752  35699984443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.94  E-value=7.4e-08  Score=85.02  Aligned_cols=151  Identities=13%  Similarity=0.164  Sum_probs=105.1

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCc----ccceEEEEEc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRC----IDIQGIVFTA  193 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~----~~~~~~vyss  193 (329)
                      ..+.++||.|++|..+|+++..+..  ...  ..++    . +++.++...            ...    ....+++|+.
T Consensus       118 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~iyv~GG~~------------~~~~~~~~~~~~~~yd~  176 (306)
T 3ii7_A          118 YLFECYDTRTESWHTKPSMLTQRCS--HGM--VEAN----G-LIYVCGGSL------------GNNVSGRVLNSCEVYDP  176 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS--CEE--EEET----T-EEEEECCEE------------SCTTTCEECCCEEEEET
T ss_pred             eeEEEEeCCCCceEeCCCCcCCcce--eEE--EEEC----C-EEEEECCCC------------CCCCcccccceEEEeCC
Confidence            5799999999999999988766532  111  2222    2 455554220            111    2678999999


Q ss_pred             CCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCcccccc-CCCCCCCCCceeE
Q 037927          194 KTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRV-PKPDFDYAHQAMG  271 (329)
Q Consensus       194 ~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~  271 (329)
                      .+++|+.++.    +|...     .... .+.++|.+|.+++ .... ....+..||+.+++|..+ ++|...   ....
T Consensus       177 ~~~~W~~~~~----~p~~r-----~~~~-~~~~~~~i~v~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~  242 (306)
T 3ii7_A          177 ATETWTELCP----MIEAR-----KNHG-LVFVKDKIFAVGG-QNGLGGLDNVEYYDIKLNEWKMVSPMPWKG---VTVK  242 (306)
T ss_dssp             TTTEEEEECC----CSSCC-----BSCE-EEEETTEEEEECC-EETTEEBCCEEEEETTTTEEEECCCCSCCB---SCCE
T ss_pred             CCCeEEECCC----ccchh-----hcce-EEEECCEEEEEeC-CCCCCCCceEEEeeCCCCcEEECCCCCCCc---ccee
Confidence            9999999987    77655     3333 6788999999987 4322 146799999999999988 555543   2356


Q ss_pred             EEEECCcEEEEEc----CCEEEEEEeeeCCCccceEEe
Q 037927          272 LGVVGGRLCLLAL----GANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       272 l~~~~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~  305 (329)
                      .++.+|+|+++..    ...-.+|.++-.  ..+|+++
T Consensus       243 ~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~  278 (306)
T 3ii7_A          243 CAAVGSIVYVLAGFQGVGRLGHILEYNTE--TDKWVAN  278 (306)
T ss_dssp             EEEETTEEEEEECBCSSSBCCEEEEEETT--TTEEEEE
T ss_pred             EEEECCEEEEEeCcCCCeeeeeEEEEcCC--CCeEEeC
Confidence            6777999999987    233467887753  3569999

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.93  E-value=5.8e-08  Score=85.95  Aligned_cols=154  Identities=9%  Similarity=0.019  Sum_probs=105.6

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..+|+++..+..  ...  ..++    . +++.++..      .      .......+++|+..+++
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~iyv~GG~------~------~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNR--IGV--GVID----G-HIYAVGGS------H------GCIHHNSVERYEPERDE  148 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBT--CEE--EEET----T-EEEEECCE------E------TTEECCCEEEEETTTTE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccc--cEE--EEEC----C-EEEEEcCC------C------CCcccccEEEECCCCCe
Confidence            4789999999999999988776542  111  1222    2 45555422      0      22345679999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVV  275 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~  275 (329)
                      |+.++.    +|...     .... .+.++|.+|.+++ ..... ...+..||+.+++|..+ ++|...   .....++.
T Consensus       149 W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~~~  214 (308)
T 1zgk_A          149 WHLVAP----MLTRR-----IGVG-VAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRMITAMNTIR---SGAGVCVL  214 (308)
T ss_dssp             EEECCC----CSSCC-----BSCE-EEEETTEEEEECC-BCSSCBCCCEEEEETTTTEEEECCCCSSCC---BSCEEEEE
T ss_pred             EeECCC----CCccc-----cceE-EEEECCEEEEEeC-CCCCCcCceEEEEeCCCCeEeeCCCCCCcc---ccceEEEE
Confidence            999987    77655     3333 6788999999987 54322 56799999999999987 445433   23456677


Q ss_pred             CCcEEEEEc----CCEEEEEEeeeCCCccceEEeecc
Q 037927          276 GGRLCLLAL----GANVELWVMKEYGVKCSWQKHYCL  308 (329)
Q Consensus       276 ~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~~~~  308 (329)
                      +++|+++..    ...-.+|+++-.  ...|+++..|
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  249 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVE--TETWTFVAPM  249 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECCCC
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCC--CCcEEECCCC
Confidence            999999986    223467777642  3569998443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.92  E-value=1.1e-07  Score=84.16  Aligned_cols=155  Identities=10%  Similarity=0.102  Sum_probs=106.2

Q ss_pred             CceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927          117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN  196 (329)
Q Consensus       117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~  196 (329)
                      ...+.++||.|++|..+++++..+..  ..  ...++    . +++.++..      .      .......+++|+..++
T Consensus       136 ~~~~~~yd~~~~~W~~~~~~p~~r~~--~~--~~~~~----~-~iyv~GG~------~------~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          136 HNSVERYEPERDEWHLVAPMLTRRIG--VG--VAVLN----R-LLYAVGGF------D------GTNRLNSAECYYPERN  194 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS--CE--EEEET----T-EEEEECCB------C------SSCBCCCEEEEETTTT
T ss_pred             cccEEEECCCCCeEeECCCCCccccc--eE--EEEEC----C-EEEEEeCC------C------CCCcCceEEEEeCCCC
Confidence            35789999999999999987766532  11  12222    2 45555422      0      1223568999999999


Q ss_pred             ceEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCcccccc-CCCCCCCCCceeEEEE
Q 037927          197 SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGV  274 (329)
Q Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~  274 (329)
                      +|+.++.    +|...     .... .+.++|.+|.+++ .... ....+..||+.+++|..+ ++|...   .....++
T Consensus       195 ~W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r---~~~~~~~  260 (308)
T 1zgk_A          195 EWRMITA----MNTIR-----SGAG-VCVLHNCIYAAGG-YDGQDQLNSVERYDVETETWTFVAPMKHRR---SALGITV  260 (308)
T ss_dssp             EEEECCC----CSSCC-----BSCE-EEEETTEEEEECC-BCSSSBCCCEEEEETTTTEEEECCCCSSCC---BSCEEEE
T ss_pred             eEeeCCC----CCCcc-----ccce-EEEECCEEEEEeC-CCCCCccceEEEEeCCCCcEEECCCCCCCc---cceEEEE
Confidence            9999987    77655     3333 6788999999987 4322 146899999999999988 454433   2346667


Q ss_pred             ECCcEEEEEc----CCEEEEEEeeeCCCccceEEeecc
Q 037927          275 VGGRLCLLAL----GANVELWVMKEYGVKCSWQKHYCL  308 (329)
Q Consensus       275 ~~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~~~~  308 (329)
                      .+|+|+++..    ...-.+|.++-.  ...|+++..|
T Consensus       261 ~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  296 (308)
T 1zgk_A          261 HQGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM  296 (308)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred             ECCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence            8999999986    223467777753  3569999333

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.92  E-value=1.9e-07  Score=82.97  Aligned_cols=155  Identities=10%  Similarity=0.126  Sum_probs=105.5

Q ss_pred             EEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCceE
Q 037927          120 IFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWK  199 (329)
Q Consensus       120 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~  199 (329)
                      +.++||.|++|..+|+++..+..  ...  ..++    . +++.++...    ..      .......+++|+..+++|+
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~iyv~GG~~----~~------~~~~~~~~~~yd~~~~~W~  140 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCL--FGL--GEVD----D-KIYVVAGKD----LQ------TEASLDSVLCYDPVAAKWS  140 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCS--CEE--EEET----T-EEEEEEEEB----TT------TCCEEEEEEEEETTTTEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccc--cce--EEEC----C-EEEEEcCcc----CC------CCcccceEEEEeCCCCCEe
Confidence            88999999999999988776532  111  1221    2 344454320    00      1234567999999999999


Q ss_pred             EecccCcccccccccccccCCCceeEECceeeEEeeccccC--CceEEEEEECCCcccccc-CCCCCCCCCceeEEEEEC
Q 037927          200 KVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF--GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVG  276 (329)
Q Consensus       200 ~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~  276 (329)
                      .++.    +|...     .... .+.++|.+|.+++ ....  ....+..||+.+++|+.+ ++|...   .....++.+
T Consensus       141 ~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~~~~  206 (318)
T 2woz_A          141 EVKN----LPIKV-----YGHN-VISHNGMIYCLGG-KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR---SMFGVAIHK  206 (318)
T ss_dssp             EECC----CSSCE-----ESCE-EEEETTEEEEECC-EESSSCBCCCEEEEETTTTEEEEECCCSSCC---BSCEEEEET
T ss_pred             ECCC----CCCcc-----cccE-EEEECCEEEEEcC-CCCCCCccceEEEEcCCCCEEEECCCCCCCc---ccceEEEEC
Confidence            9987    77665     3333 6779999999987 4321  145799999999999988 455433   234567789


Q ss_pred             CcEEEEEc--CC--EEEEEEeeeCCCccceEEeeccc
Q 037927          277 GRLCLLAL--GA--NVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       277 g~L~~~~~--~~--~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      |+|+++..  ..  .-.+|.++-.  ...|+++..||
T Consensus       207 ~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p  241 (318)
T 2woz_A          207 GKIVIAGGVTEDGLSASVEAFDLK--TNKWEVMTEFP  241 (318)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEETT--TCCEEECCCCS
T ss_pred             CEEEEEcCcCCCCccceEEEEECC--CCeEEECCCCC
Confidence            99999987  22  3467777642  35699985544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.92  E-value=5.6e-08  Score=86.26  Aligned_cols=157  Identities=10%  Similarity=0.063  Sum_probs=107.1

Q ss_pred             eEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCce
Q 037927          119 EIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSW  198 (329)
Q Consensus       119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W  198 (329)
                      .+.++||.|++|..+|+++..+..  ...  ..++    . +++.++...   ..+      .......+++|+..+++|
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~lyv~GG~~---~~~------~~~~~~~~~~~d~~~~~W  129 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCL--FGL--GEAL----N-SIYVVGGRE---IKD------GERCLDSVMCYDRLSFKW  129 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEES--CEE--EEET----T-EEEEECCEE---SST------TCCBCCCEEEEETTTTEE
T ss_pred             ceEEecCCCCeEEECCCCCcchhc--eeE--EEEC----C-EEEEEeCCc---CCC------CCcccceEEEECCCCCcE
Confidence            488999999999999988765432  111  1221    2 455554220   000      234567899999999999


Q ss_pred             EEecccCcccccccccccccCCCceeEECceeeEEeeccccC--CceEEEEEECCCcccccc-CCCCCCCCCceeEEEEE
Q 037927          199 KKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF--GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVV  275 (329)
Q Consensus       199 ~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~  275 (329)
                      +.++.    +|...     .... .+.++|.+|.+++ ....  ....+..||+.+++|+.+ ++|...   .....++.
T Consensus       130 ~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~~~  195 (315)
T 4asc_A          130 GESDP----LPYVV-----YGHT-VLSHMDLVYVIGG-KGSDRKCLNKMCVYDPKKFEWKELAPMQTAR---SLFGATVH  195 (315)
T ss_dssp             EECCC----CSSCC-----BSCE-EEEETTEEEEECC-BCTTSCBCCCEEEEETTTTEEEECCCCSSCC---BSCEEEEE
T ss_pred             eECCC----CCCcc-----ccee-EEEECCEEEEEeC-CCCCCcccceEEEEeCCCCeEEECCCCCCch---hceEEEEE
Confidence            99987    77665     3333 7889999999998 5221  156899999999999988 455443   33566778


Q ss_pred             CCcEEEEEc----CCEEEEEEeeeCCCccceEEeeccc
Q 037927          276 GGRLCLLAL----GANVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       276 ~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      +|+|+++..    ...-.+|.++-.  ...|+++..||
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p  231 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSIT--DNKWAPFEAFP  231 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETT--TTEEEEECCCS
T ss_pred             CCEEEEEeccCCCCccceEEEEECC--CCeEEECCCCC
Confidence            999999987    224477888753  35799994443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.89  E-value=8.9e-08  Score=84.25  Aligned_cols=155  Identities=7%  Similarity=0.054  Sum_probs=105.9

Q ss_pred             ceEEEEcCcccc---eeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcC
Q 037927          118 REIFIWNPSTGA---YTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK  194 (329)
Q Consensus       118 ~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~  194 (329)
                      ..+.++||.|++   |..+++++..+..  ...  ..++    . +++.++..      .      .......+++|+..
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~lyv~GG~------~------~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMNVRRGL--AGA--TTLG----D-MIYVSGGF------D------GSRRHTSMERYDPN  136 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCSSCCBS--CEE--EEET----T-EEEEECCB------C------SSCBCCEEEEEETT
T ss_pred             ceEEEEECCCCCCCeeEECCCCCCCccc--eeE--EEEC----C-EEEEEccc------C------CCcccceEEEEcCC
Confidence            579999999999   9999888766542  111  2222    2 45555522      0      12235679999999


Q ss_pred             CCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCcccccc-CCCCCCCCCceeEE
Q 037927          195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGL  272 (329)
Q Consensus       195 t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l  272 (329)
                      +++|+.++.    +|...     .... .+.++|.+|.+++ .... ....+..||+.+++|+.+ ++|...   .....
T Consensus       137 ~~~W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~  202 (301)
T 2vpj_A          137 IDQWSMLGD----MQTAR-----EGAG-LVVASGVIYCLGG-YDGLNILNSVEKYDPHTGHWTNVTPMATKR---SGAGV  202 (301)
T ss_dssp             TTEEEEEEE----CSSCC-----BSCE-EEEETTEEEEECC-BCSSCBCCCEEEEETTTTEEEEECCCSSCC---BSCEE
T ss_pred             CCeEEECCC----CCCCc-----ccce-EEEECCEEEEECC-CCCCcccceEEEEeCCCCcEEeCCCCCccc---ccceE
Confidence            999999987    77555     3333 6788999999987 5432 256899999999999988 455443   23466


Q ss_pred             EEECCcEEEEEc----CCEEEEEEeeeCCCccceEEeeccc
Q 037927          273 GVVGGRLCLLAL----GANVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       273 ~~~~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      +..+++|+++..    ...-.+|.++-.  ...|+++..||
T Consensus       203 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p  241 (301)
T 2vpj_A          203 ALLNDHIYVVGGFDGTAHLSSVEAYNIR--TDSWTTVTSMT  241 (301)
T ss_dssp             EEETTEEEEECCBCSSSBCCCEEEEETT--TTEEEEECCCS
T ss_pred             EEECCEEEEEeCCCCCcccceEEEEeCC--CCcEEECCCCC
Confidence            778999999987    113456777642  35699984443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.89  E-value=5.2e-08  Score=86.03  Aligned_cols=168  Identities=11%  Similarity=0.080  Sum_probs=111.4

Q ss_pred             ccccEEEEEc----CCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCC
Q 037927          106 CHGLICLALD----NYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNS  181 (329)
Q Consensus       106 ~~Glll~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~  181 (329)
                      .+|.|.+...    ....+.++||.|++|..+|+++..+..  ...  ..++    . +++.++..     ..      .
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~iyv~GG~-----~~------~  113 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS--LAA--CAAE----G-KIYTSGGS-----EV------G  113 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS--CEE--EEET----T-EEEEECCB-----BT------T
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc--eeE--EEEC----C-EEEEECCC-----CC------C
Confidence            4555544412    246799999999999999888766532  111  2222    2 35555521     00      1


Q ss_pred             CcccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-----ceEEEEEECCCcccc
Q 037927          182 RCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-----MFGITAFDLATDKFS  256 (329)
Q Consensus       182 ~~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-----~~~i~~fD~~~~~~~  256 (329)
                      ......+++|+..+++|+.++.    +|...     .... .+.++|.+|.+++ .....     ...+..||+.+++|+
T Consensus       114 ~~~~~~~~~~d~~~~~W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          114 NSALYLFECYDTRTESWHTKPS----MLTQR-----CSHG-MVEANGLIYVCGG-SLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             BSCCCCEEEEETTTTEEEEECC----CSSCC-----BSCE-EEEETTEEEEECC-EESCTTTCEECCCEEEEETTTTEEE
T ss_pred             CcEeeeEEEEeCCCCceEeCCC----CcCCc-----ceeE-EEEECCEEEEECC-CCCCCCcccccceEEEeCCCCCeEE
Confidence            2345689999999999999987    77655     3333 6788999999987 43321     467999999999999


Q ss_pred             cc-CCCCCCCCCceeEEEEECCcEEEEEc--CC--EEEEEEeeeCCCccceEEeeccc
Q 037927          257 RV-PKPDFDYAHQAMGLGVVGGRLCLLAL--GA--NVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       257 ~i-~lP~~~~~~~~~~l~~~~g~L~~~~~--~~--~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      .+ ++|...   .....++.+|+|+++..  ..  .-.+|.++-.  ...|+++..||
T Consensus       183 ~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p  235 (306)
T 3ii7_A          183 ELCPMIEAR---KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK--LNEWKMVSPMP  235 (306)
T ss_dssp             EECCCSSCC---BSCEEEEETTEEEEECCEETTEEBCCEEEEETT--TTEEEECCCCS
T ss_pred             ECCCccchh---hcceEEEECCEEEEEeCCCCCCCCceEEEeeCC--CCcEEECCCCC
Confidence            88 455443   33566777999999976  22  2356777642  35699985444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.88  E-value=1.7e-07  Score=82.36  Aligned_cols=167  Identities=16%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             ccccEEEEEc-----CCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCC
Q 037927          106 CHGLICLALD-----NYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDN  180 (329)
Q Consensus       106 ~~Glll~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~  180 (329)
                      .+|.|.+...     ....+.++||.|++|..+++++..+..    .....++    . +++.++..      +      
T Consensus       111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~----~-~iyv~GG~------~------  169 (301)
T 2vpj_A          111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG----AGLVVAS----G-VIYCLGGY------D------  169 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS----CEEEEET----T-EEEEECCB------C------
T ss_pred             ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc----ceEEEEC----C-EEEEECCC------C------
Confidence            3566655412     135799999999999999877765432    1122222    2 35555422      0      


Q ss_pred             CCcccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-ceEEEEEECCCcccccc-
Q 037927          181 SRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-MFGITAFDLATDKFSRV-  258 (329)
Q Consensus       181 ~~~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~~~i-  258 (329)
                      .......+++|+..+++|+.++.    +|...     .... .+.++|.+|.+++ ..... ...+..||+.+++|..+ 
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~----~p~~r-----~~~~-~~~~~~~i~v~GG-~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTP----MATKR-----SGAG-VALLNDHIYVVGG-FDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECC----CSSCC-----BSCE-EEEETTEEEEECC-BCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CCcccceEEEEeCCCCcEEeCCC----CCccc-----ccce-EEEECCEEEEEeC-CCCCcccceEEEEeCCCCcEEECC
Confidence            22345789999999999999987    77655     3333 7888999999988 54322 46899999999999988 


Q ss_pred             CCCCCCCCCceeEEEEECCcEEEEEc----CCEEEEEEeeeCCCccceEEeeccc
Q 037927          259 PKPDFDYAHQAMGLGVVGGRLCLLAL----GANVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       259 ~lP~~~~~~~~~~l~~~~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      ++|...   .....+..+|+|+++..    ...-.||.++-.  ..+|+++..||
T Consensus       239 ~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~  288 (301)
T 2vpj_A          239 SMTTPR---CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTSMG  288 (301)
T ss_dssp             CCSSCC---BSCEEEEETTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEEEE
T ss_pred             CCCCcc---cceeEEEECCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCCCC
Confidence            455433   23456677999999986    223577888753  35699994433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.81  E-value=2.4e-07  Score=82.19  Aligned_cols=152  Identities=12%  Similarity=0.160  Sum_probs=105.8

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..+++++..+..  ..  ...++    . +++.++..     ..      .......+++|+..+++
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~--~~~~~----~-~iyv~GG~-----~~------~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLPYVVYG--HT--VLSHM----D-LVYVIGGK-----GS------DRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS--CE--EEEET----T-EEEEECCB-----CT------TSCBCCCEEEEETTTTE
T ss_pred             ceEEEECCCCCcEeECCCCCCcccc--ee--EEEEC----C-EEEEEeCC-----CC------CCcccceEEEEeCCCCe
Confidence            5699999999999999988766532  11  12222    2 45555521     00      23345789999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVV  275 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~  275 (329)
                      |+.++.    +|...     .... .+.++|.+|.+++ ..... ...+..||+.+++|+.+ ++|...   ....++..
T Consensus       177 W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~~~  242 (315)
T 4asc_A          177 WKELAP----MQTAR-----SLFG-ATVHDGRIIVAAG-VTDTGLTSSAEVYSITDNKWAPFEAFPQER---SSLSLVSL  242 (315)
T ss_dssp             EEECCC----CSSCC-----BSCE-EEEETTEEEEEEE-ECSSSEEEEEEEEETTTTEEEEECCCSSCC---BSCEEEEE
T ss_pred             EEECCC----CCCch-----hceE-EEEECCEEEEEec-cCCCCccceEEEEECCCCeEEECCCCCCcc---cceeEEEE
Confidence            999987    77655     3333 7788999999988 54322 56899999999999988 445433   23466778


Q ss_pred             CCcEEEEEc-CC------------EEEEEEeeeCCCccceEEe
Q 037927          276 GGRLCLLAL-GA------------NVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       276 ~g~L~~~~~-~~------------~l~vW~l~~~~~~~~W~~~  305 (329)
                      +|+|+++.. ..            .-.+|+++-.  ...|+++
T Consensus       243 ~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~  283 (315)
T 4asc_A          243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EKKWEGV  283 (315)
T ss_dssp             TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT--TTEEEEE
T ss_pred             CCEEEEECCccccCcCCccccccccCcEEEecCC--CChhhhh
Confidence            999999986 11            2367888753  3569988

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.76  E-value=2.6e-07  Score=82.01  Aligned_cols=152  Identities=15%  Similarity=0.268  Sum_probs=103.8

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..+++++..+..    .....++    . +++.++...     .      .......+++|+..+++
T Consensus       127 ~~~~~yd~~~~~W~~~~~~p~~r~~----~~~~~~~----~-~iyv~GG~~-----~------~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          127 DSVLCYDPVAAKWSEVKNLPIKVYG----HNVISHN----G-MIYCLGGKT-----D------DKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             EEEEEEETTTTEEEEECCCSSCEES----CEEEEET----T-EEEEECCEE-----S------SSCBCCCEEEEETTTTE
T ss_pred             ceEEEEeCCCCCEeECCCCCCcccc----cEEEEEC----C-EEEEEcCCC-----C------CCCccceEEEEcCCCCE
Confidence            4688999999999999877765432    1111222    2 455554210     0      22335679999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEE
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVV  275 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~  275 (329)
                      |+.++.    +|...     .... .+.++|.+|.+++ ..... ...+..||+.+++|+.+ ++|...   ....+++.
T Consensus       187 W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~~~  252 (318)
T 2woz_A          187 WKDLAP----MKTPR-----SMFG-VAIHKGKIVIAGG-VTEDGLSASVEAFDLKTNKWEVMTEFPQER---SSISLVSL  252 (318)
T ss_dssp             EEEECC----CSSCC-----BSCE-EEEETTEEEEEEE-EETTEEEEEEEEEETTTCCEEECCCCSSCC---BSCEEEEE
T ss_pred             EEECCC----CCCCc-----ccce-EEEECCEEEEEcC-cCCCCccceEEEEECCCCeEEECCCCCCcc---cceEEEEE
Confidence            999987    77655     2333 6789999999987 54321 46789999999999988 555443   23466788


Q ss_pred             CCcEEEEEc-CC------------EEEEEEeeeCCCccceEEe
Q 037927          276 GGRLCLLAL-GA------------NVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       276 ~g~L~~~~~-~~------------~l~vW~l~~~~~~~~W~~~  305 (329)
                      +|+|+++.. ..            .-.+|.++-.  +..|+++
T Consensus       253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~  293 (318)
T 2woz_A          253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD--KKEWAGM  293 (318)
T ss_dssp             TTEEEEECCBCCBC----CCBCCBCCCEEEEETT--TTEEEEE
T ss_pred             CCEEEEECCeeccCCCCceeccceeeeEEEEeCC--CCEehhh
Confidence            999999876 11            2468888753  3569987

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.73  E-value=4.3e-07  Score=79.91  Aligned_cols=156  Identities=13%  Similarity=0.121  Sum_probs=105.4

Q ss_pred             CceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927          117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN  196 (329)
Q Consensus       117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~  196 (329)
                      ...+.++||.+++|..+++++..+..  ...  ..++    . +++.++..      .      .......+++|+..++
T Consensus        29 ~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~--~~~~----~-~lyv~GG~------~------~~~~~~~~~~~d~~~~   87 (302)
T 2xn4_A           29 IRSVECYDFKEERWHQVAELPSRRCR--AGM--VYMA----G-LVFAVGGF------N------GSLRVRTVDSYDPVKD   87 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBS--CEE--EEET----T-EEEEESCB------C------SSSBCCCEEEEETTTT
T ss_pred             CCcEEEEcCcCCcEeEcccCCccccc--ceE--EEEC----C-EEEEEeCc------C------CCccccceEEECCCCC
Confidence            35688999999999999877765532  111  1221    2 34445421      0      1233467899999999


Q ss_pred             ceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-ceEEEEEECCCcccccc-CCCCCCCCCceeEEEE
Q 037927          197 SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGV  274 (329)
Q Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~  274 (329)
                      +|+.++.    +|...     .... .+.++|.+|.+++ ..... ...+..||+.+++|..+ ++|...   .....++
T Consensus        88 ~W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~  153 (302)
T 2xn4_A           88 QWTSVAN----MRDRR-----STLG-AAVLNGLLYAVGG-FDGSTGLSSVEAYNIKSNEWFHVAPMNTRR---SSVGVGV  153 (302)
T ss_dssp             EEEEECC----CSSCC-----BSCE-EEEETTEEEEEEE-ECSSCEEEEEEEEETTTTEEEEECCCSSCC---BSCEEEE
T ss_pred             ceeeCCC----CCccc-----cceE-EEEECCEEEEEcC-CCCCccCceEEEEeCCCCeEeecCCCCCcc---cCceEEE
Confidence            9999987    77655     2333 6788999999988 54322 46899999999999988 455433   2346677


Q ss_pred             ECCcEEEEEc--CC----EEEEEEeeeCCCccceEEeeccc
Q 037927          275 VGGRLCLLAL--GA----NVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       275 ~~g~L~~~~~--~~----~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      .+|+|+++..  ..    .-.+|.++-.  ...|+++..||
T Consensus       154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p  192 (302)
T 2xn4_A          154 VGGLLYAVGGYDVASRQCLSTVECYNAT--TNEWTYIAEMS  192 (302)
T ss_dssp             ETTEEEEECCEETTTTEECCCEEEEETT--TTEEEEECCCS
T ss_pred             ECCEEEEEeCCCCCCCccccEEEEEeCC--CCcEEECCCCc
Confidence            8999999986  21    2357777642  35699984443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.66  E-value=8.2e-07  Score=80.05  Aligned_cols=173  Identities=15%  Similarity=0.106  Sum_probs=106.6

Q ss_pred             cccEEEEEc-CCceEEEEcCc--ccceeeCCCCC-CCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCC
Q 037927          107 HGLICLALD-NYREIFIWNPS--TGAYTKLPADP-DATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR  182 (329)
Q Consensus       107 ~Glll~~~~-~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  182 (329)
                      +|.|.+... ....+.++||.  +++|..+|+++ ..+..  ...  ..++    . +++.++...+ ....      ..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~--~~~--~~~~----~-~lyv~GG~~~-~~~~------~~   82 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ--ATS--AFID----G-NLYVFGGIGK-NSEG------LT   82 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS--CEE--EEET----T-EEEEECCEEE-CTTS------CE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc--ceE--EEEC----C-EEEEEcCCCC-CCCc------cc
Confidence            555544412 34589999998  59999999877 44432  111  2222    2 3444442100 0000      12


Q ss_pred             cccceEEEEEcCCCceEEecccCcccc-cccccccccCCCceeEECceeeEEeeccccC---------------------
Q 037927          183 CIDIQGIVFTAKTNSWKKVEHSFGSIH-CCCEARNLQGRPMGTLVNESLHWLTNNQCEF---------------------  240 (329)
Q Consensus       183 ~~~~~~~vyss~t~~W~~~~~~~~~~p-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---------------------  240 (329)
                      .....+++|+..+++|+.++.    ++ ...     .... .+..+|.+|.+++ ....                     
T Consensus        83 ~~~~~v~~yd~~~~~W~~~~~----~~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~~~~  151 (357)
T 2uvk_A           83 QVFNDVHKYNPKTNSWVKLMS----HAPMGM-----AGHV-TFVHNGKAYVTGG-VNQNIFNGYFEDLNEAGKDSTAIDK  151 (357)
T ss_dssp             EECCCEEEEETTTTEEEECSC----CCSSCC-----SSEE-EEEETTEEEEEEC-CCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             eeeccEEEEeCCCCcEEECCC----CCCccc-----ccce-EEEECCEEEEEeC-cCCCcCcccccchhhcCCcccchhh
Confidence            335679999999999999987    55 433     2222 5679999999987 4321                     


Q ss_pred             --------------CceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECCcEEEEEc---C--CEEEEEEeeeCCCcc
Q 037927          241 --------------GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL---G--ANVELWVMKEYGVKC  300 (329)
Q Consensus       241 --------------~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~---~--~~l~vW~l~~~~~~~  300 (329)
                                    ....+..||+.+++|+.+ ++|....  ....+++.+++|+++..   .  ..-.+|.++-+....
T Consensus       152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~  229 (357)
T 2uvk_A          152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT--AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL  229 (357)
T ss_dssp             HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC--BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred             hhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCc--ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence                          026899999999999988 5564322  22567778999999976   1  133567765322245


Q ss_pred             ceEEeecc
Q 037927          301 SWQKHYCL  308 (329)
Q Consensus       301 ~W~~~~~~  308 (329)
                      .|+++..|
T Consensus       230 ~W~~~~~~  237 (357)
T 2uvk_A          230 KWNKLAPV  237 (357)
T ss_dssp             EEEECCCS
T ss_pred             cEEecCCC
Confidence            79998444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.60  E-value=7.7e-06  Score=75.64  Aligned_cols=47  Identities=32%  Similarity=0.409  Sum_probs=42.0

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHHhhh
Q 037927            1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKR   47 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~~~~   47 (329)
                      ++.||+|++.+||++|++++|.++.+|||+|+.++.++.+-+.....
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~   65 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheee
Confidence            46799999999999999999999999999999999998877766543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.56  E-value=4e-06  Score=75.47  Aligned_cols=111  Identities=13%  Similarity=0.092  Sum_probs=71.3

Q ss_pred             ceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEEC--CCcccccc-CC
Q 037927          186 IQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDL--ATDKFSRV-PK  260 (329)
Q Consensus       186 ~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~--~~~~~~~i-~l  260 (329)
                      ..+++|+..+++|+.++.    +|...   . .... .+.++|.+|.+++ .....  ...+..||+  .+.+|+.+ ++
T Consensus       168 ~~v~~yd~~~~~W~~~~~----~p~~~---~-~~~~-~~~~~~~iyv~GG-~~~~~~~~~~v~~~d~d~~~~~W~~~~~~  237 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGE----SPWYG---T-AGAA-VVNKGDKTWLING-EAKPGLRTDAVFELDFTGNNLKWNKLAPV  237 (357)
T ss_dssp             CEEEEEETTTTEEEEEEE----CSSCC---C-BSCE-EEEETTEEEEECC-EEETTEECCCEEEEECC---CEEEECCCS
T ss_pred             ccEEEEeCCCCcEEECCC----CCCCC---c-cccc-EEEECCEEEEEee-ecCCCcccCceEEEEecCCCCcEEecCCC
Confidence            689999999999999987    77543   1 2223 7888999999987 43221  345777876  89999987 44


Q ss_pred             CCCCCCCceeEEEEECCcEEEEEc--CC-------------------EEEEEEeeeCCCccceEEeeccc
Q 037927          261 PDFDYAHQAMGLGVVGGRLCLLAL--GA-------------------NVELWVMKEYGVKCSWQKHYCLG  309 (329)
Q Consensus       261 P~~~~~~~~~~l~~~~g~L~~~~~--~~-------------------~l~vW~l~~~~~~~~W~~~~~~~  309 (329)
                      |..... .....++.+|+|+++..  ..                   .-.+|+++-.  ...|+++..||
T Consensus       238 ~~~~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p  304 (357)
T 2uvk_A          238 SSPDGV-AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELS  304 (357)
T ss_dssp             STTTCC-BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECS
T ss_pred             CCCccc-ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCC
Confidence            433221 23457788999999885  10                   1356666642  35699994443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.46  E-value=3e-05  Score=71.89  Aligned_cols=39  Identities=13%  Similarity=0.422  Sum_probs=36.0

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCC-hhH
Q 037927            2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISD-PGF   40 (329)
Q Consensus         2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~-~~F   40 (329)
                      +.||+|++.+||++||+++|.++..|||+|+.++.+ +..
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~   55 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   55 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            469999999999999999999999999999999997 553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.42  E-value=4.4e-06  Score=77.19  Aligned_cols=44  Identities=30%  Similarity=0.405  Sum_probs=38.4

Q ss_pred             CCCcHH----HHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHHh
Q 037927            2 SNLPDD----VLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQY   45 (329)
Q Consensus         2 ~~LP~D----ll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~~   45 (329)
                      +.||+|    |+.+||++|++++|.++.+|||+|+.++.++.+=+...
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~   59 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI   59 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            459999    99999999999999999999999999999776544443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.19  E-value=2.2e-05  Score=77.36  Aligned_cols=155  Identities=12%  Similarity=0.034  Sum_probs=94.9

Q ss_pred             CceEEEEcCcccceeeCC-C-----CCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEE
Q 037927          117 YREIFIWNPSTGAYTKLP-A-----DPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIV  190 (329)
Q Consensus       117 ~~~~~V~NP~T~~~~~LP-~-----~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~v  190 (329)
                      ...+.++||.|++|..++ +     ++..+.  .  . ....-.. +. +++.++..    . .      .......+++
T Consensus       411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~--~--h-s~~~~~~-~~-~lyv~GG~----~-~------~~~~~~dv~~  472 (695)
T 2zwa_A          411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARM--C--H-TFTTISR-NN-QLLLIGGR----K-A------PHQGLSDNWI  472 (695)
T ss_dssp             CCCEEEEEECSSCEEEEECCCCCSCCCCCCB--S--C-EEEEETT-TT-EEEEECCB----S-S------TTCBCCCCEE
T ss_pred             cCcEEEEECCCCeEEEeccCCCCCCCCcccc--c--e-EEEEEcc-CC-EEEEEcCC----C-C------CCCccccEEE
Confidence            357999999999999988 5     233222  1  1 2222110 12 35555522    0 0      1113457999


Q ss_pred             EEcCCCceEEecccCcccccccccccccCCCceeEE-CceeeEEeeccccCCceEEEEEECCCccccccC----CCCCCC
Q 037927          191 FTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLV-NESLHWLTNNQCEFGMFGITAFDLATDKFSRVP----KPDFDY  265 (329)
Q Consensus       191 yss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~  265 (329)
                      |+..+++|+.++.    +|...     .... .+.+ +|.+|..++ .....  .+..||+.+++|+.+.    +|....
T Consensus       473 yd~~t~~W~~~~~----~p~~R-----~~h~-~~~~~~~~iyv~GG-~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~  539 (695)
T 2zwa_A          473 FDMKTREWSMIKS----LSHTR-----FRHS-ACSLPDGNVLILGG-VTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL  539 (695)
T ss_dssp             EETTTTEEEECCC----CSBCC-----BSCE-EEECTTSCEEEECC-BCSSC--SEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred             EeCCCCcEEECCC----CCCCc-----ccce-EEEEcCCEEEEECC-CCCCC--CEEEEECCCCceEEccCCCCCCCccc
Confidence            9999999999987    77655     3333 5564 999999988 54432  8999999999999885    444332


Q ss_pred             CCceeEEEEEC---CcEEEEEc--CC----EEEEEEeeeCCCc----cceEEe
Q 037927          266 AHQAMGLGVVG---GRLCLLAL--GA----NVELWVMKEYGVK----CSWQKH  305 (329)
Q Consensus       266 ~~~~~~l~~~~---g~L~~~~~--~~----~l~vW~l~~~~~~----~~W~~~  305 (329)
                         ....++.+   |+|++++.  ..    .-.+|.++-....    ..|+++
T Consensus       540 ---~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~  589 (695)
T 2zwa_A          540 ---VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKK  589 (695)
T ss_dssp             ---BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEE
T ss_pred             ---ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEc
Confidence               22323333   88999986  11    2356666542211    138888

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.97  E-value=2.3e-06  Score=73.89  Aligned_cols=47  Identities=26%  Similarity=0.326  Sum_probs=42.7

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHHhhhc
Q 037927            2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRT   48 (329)
Q Consensus         2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~~~~~   48 (329)
                      +.||+|++..||+.|++++|+++.+|||+||.+..++.-=+.+..+.
T Consensus         6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence            46999999999999999999999999999999999998777766664

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.66  E-value=0.00033  Score=68.92  Aligned_cols=153  Identities=8%  Similarity=0.082  Sum_probs=95.6

Q ss_pred             ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927          118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS  197 (329)
Q Consensus       118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~  197 (329)
                      ..+.++||.|++|..+++++..+..  . . +....   +. +++.++..             ....  .+++|+..+++
T Consensus       468 ~dv~~yd~~t~~W~~~~~~p~~R~~--h-~-~~~~~---~~-~iyv~GG~-------------~~~~--~v~~yd~~t~~  524 (695)
T 2zwa_A          468 SDNWIFDMKTREWSMIKSLSHTRFR--H-S-ACSLP---DG-NVLILGGV-------------TEGP--AMLLYNVTEEI  524 (695)
T ss_dssp             CCCEEEETTTTEEEECCCCSBCCBS--C-E-EEECT---TS-CEEEECCB-------------CSSC--SEEEEETTTTE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCccc--c-e-EEEEc---CC-EEEEECCC-------------CCCC--CEEEEECCCCc
Confidence            4689999999999999988766532  1 1 11111   12 34445421             1111  89999999999


Q ss_pred             eEEecccCcccccccccccccCCCceeEEC---ceeeEEeeccccCC---ceEEEEEECCCcc------cccc-CCCCCC
Q 037927          198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVN---ESLHWLTNNQCEFG---MFGITAFDLATDK------FSRV-PKPDFD  264 (329)
Q Consensus       198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~---G~lywl~~~~~~~~---~~~i~~fD~~~~~------~~~i-~lP~~~  264 (329)
                      |+.++.. ..+|...     .... ++.++   |.+|.+++ ....+   ...+..||+.+++      |..+ ..|...
T Consensus       525 W~~~~~~-g~~p~~r-----~~~~-a~v~~~~~~~iyv~GG-~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~  596 (695)
T 2zwa_A          525 FKDVTPK-DEFFQNS-----LVSA-GLEFDPVSKQGIILGG-GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ  596 (695)
T ss_dssp             EEECCCS-SGGGGSC-----CBSC-EEEEETTTTEEEEECC-BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC
T ss_pred             eEEccCC-CCCCCcc-----ccee-EEEEeCCCCEEEEECC-cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC
Confidence            9998741 1144433     2222 46667   88999988 53221   4689999999999      6665 333222


Q ss_pred             CCCceeEEEEEC-CcEEEEEc-C------CEEEEEEeeeCCCccceEEe
Q 037927          265 YAHQAMGLGVVG-GRLCLLAL-G------ANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       265 ~~~~~~~l~~~~-g~L~~~~~-~------~~l~vW~l~~~~~~~~W~~~  305 (329)
                      .  .....++.+ |+|++++. .      ..-.||.++-.  ...|+..
T Consensus       597 R--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--t~~W~~~  641 (695)
T 2zwa_A          597 R--YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL--SETLTSI  641 (695)
T ss_dssp             C--BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT--TTEEEEC
T ss_pred             c--ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC--CCeEEEe
Confidence            1  234556667 99999987 1      13357777642  3569854

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.55  E-value=0.00059  Score=66.63  Aligned_cols=107  Identities=7%  Similarity=0.043  Sum_probs=72.3

Q ss_pred             eEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCce
Q 037927          119 EIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSW  198 (329)
Q Consensus       119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W  198 (329)
                      .+.++||.|++|..++.++..+.. ......+..|     -+++.++               +. ....+++|+..+++|
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~~~-----g~lyv~G---------------G~-~~~~v~~yd~~t~~W  277 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDM-FCPGISMDGN-----GQIVVTG---------------GN-DAKKTSLYDSSSDSW  277 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCC-SSCEEEECTT-----SCEEEEC---------------SS-STTCEEEEEGGGTEE
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCC-ccccccCCCC-----CCEEEeC---------------CC-CCCceEEecCcCCce
Confidence            688999999999998876554422 1111111111     2355555               11 123799999999999


Q ss_pred             EEecccCcccccccccccccCCCceeEE-CceeeEEeeccccC--CceEEEEEECCCcccccc
Q 037927          199 KKVEHSFGSIHCCCEARNLQGRPMGTLV-NESLHWLTNNQCEF--GMFGITAFDLATDKFSRV  258 (329)
Q Consensus       199 ~~~~~~~~~~p~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~--~~~~i~~fD~~~~~~~~i  258 (329)
                      ..++.    ||...     .... .+.+ +|.+|.+++ ....  ....+..||+.+++|..+
T Consensus       278 ~~~~~----~~~~R-----~~~s-~~~~~dg~iyv~GG-~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          278 IPGPD----MQVAR-----GYQS-SATMSDGRVFTIGG-SWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             EECCC----CSSCC-----SSCE-EEECTTSCEEEECC-CCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             eECCC----CCccc-----cccc-eEEecCCeEEEEeC-cccCCcccccceEeCCCCCcceeC
Confidence            99987    77655     2222 5666 999999988 4322  146789999999999886

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.53  E-value=3.4e-05  Score=68.63  Aligned_cols=39  Identities=36%  Similarity=0.716  Sum_probs=36.0

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChh
Q 037927            1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPG   39 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~   39 (329)
                      ++.||+|++.+||.+|+.+++.+++.|||+|+.++.++.
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            468999999999999999999999999999999987655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.52  E-value=0.00042  Score=67.72  Aligned_cols=152  Identities=11%  Similarity=0.022  Sum_probs=92.2

Q ss_pred             EEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCceE
Q 037927          120 IFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWK  199 (329)
Q Consensus       120 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~  199 (329)
                      +..++|.+++|..+++++...   .    ..++-+.  .=+++.++...   . +.+ .. .......+++|+..+++|+
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~~---~----~~av~~~--~g~l~v~GG~~---~-~~~-~~-~~~~~~~~~~yd~~t~~w~  232 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIVP---A----AAAIEPT--SGRVLMWSSYR---N-DAF-GG-SPGGITLTSSWDPSTGIVS  232 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSCC---S----EEEEETT--TTEEEEEEECC---C-TTT-CS-CCCSEEEEEEECTTTCCBC
T ss_pred             cccCCCCCCeeeeeccCCCCc---e----eEEEEec--CCEEEEEeccc---c-ccc-cc-CCCCeEEEEEEeCCCCcEE
Confidence            456689999999877665421   1    1222222  12455555320   0 000 00 0112347899999999999


Q ss_pred             EecccCcccccccccccccCCC-ceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCCCCCCCCceeEEEEE-C
Q 037927          200 KVEHSFGSIHCCCEARNLQGRP-MGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVV-G  276 (329)
Q Consensus       200 ~~~~~~~~~p~~~~~~~~~~~~-~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~-~  276 (329)
                      .++.    +|...   . ..+. ..+..+|.+|..++ ..   ...+..||+.+++|..+ ++|...   .....+++ +
T Consensus       233 ~~~~----~~~~~---~-~~~~~~~~~~~g~lyv~GG-~~---~~~v~~yd~~t~~W~~~~~~~~~R---~~~s~~~~~d  297 (656)
T 1k3i_A          233 DRTV----TVTKH---D-MFCPGISMDGNGQIVVTGG-ND---AKKTSLYDSSSDSWIPGPDMQVAR---GYQSSATMSD  297 (656)
T ss_dssp             CCEE----EECSC---C-CSSCEEEECTTSCEEEECS-SS---TTCEEEEEGGGTEEEECCCCSSCC---SSCEEEECTT
T ss_pred             eCcc----cCCCC---C-CccccccCCCCCCEEEeCC-CC---CCceEEecCcCCceeECCCCCccc---cccceEEecC
Confidence            9876    66543   1 2222 13346899999988 54   23799999999999877 444432   33566777 9


Q ss_pred             CcEEEEEc--C-----CEEEEEEeeeCCCccceEEe
Q 037927          277 GRLCLLAL--G-----ANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       277 g~L~~~~~--~-----~~l~vW~l~~~~~~~~W~~~  305 (329)
                      |+|+++..  .     ..+++|-.+    ...|+++
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~----t~~W~~~  329 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPS----SKTWTSL  329 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETT----TTEEEEE
T ss_pred             CeEEEEeCcccCCcccccceEeCCC----CCcceeC
Confidence            99999986  1     334444333    3569986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.15  E-value=0.00016  Score=69.43  Aligned_cols=34  Identities=26%  Similarity=0.506  Sum_probs=29.5

Q ss_pred             CCCCcHHHHHHHHhcCC-cchhhhhhhchHhhHhh
Q 037927            1 MSNLPDDVLIEVLSRLP-VKSLLRFKCACKQWLSL   34 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp-~~~l~r~~~VcK~W~~l   34 (329)
                      ++.||||++.+||++|| .+++.+++.|||+|+.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            46899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.67  E-value=0.00063  Score=65.24  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=31.2

Q ss_pred             CCCcHHHHHHHHhcC-CcchhhhhhhchHhhHhh
Q 037927            2 SNLPDDVLIEVLSRL-PVKSLLRFKCACKQWLSL   34 (329)
Q Consensus         2 ~~LP~Dll~eIL~rL-p~~~l~r~~~VcK~W~~l   34 (329)
                      +.||||++.+||++| |.+++.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            369999999999999 899999999999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=84.70  E-value=21  Score=31.66  Aligned_cols=150  Identities=11%  Similarity=0.128  Sum_probs=78.5

Q ss_pred             EEEc-cccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCC
Q 037927          101 RFIG-SCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDD  179 (329)
Q Consensus       101 ~~~~-s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~  179 (329)
                      .+++ |.+++|.+.  -+..+.|||..||+...+-.....    ......+.+.+. +.|-+  .+.             
T Consensus       109 ~~l~wS~~n~lAvg--ld~tV~lWd~~tg~~~~~~~~~~~----~~~V~sv~fspd-g~~la--sgs-------------  166 (420)
T 4gga_A          109 NLVDWSSGNVLAVA--LDNSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKE-GNYLA--VGT-------------  166 (420)
T ss_dssp             BCEEECTTSEEEEE--ETTEEEEEETTTCCEEEEEECCST----TCCEEEEEECTT-SSEEE--EEE-------------
T ss_pred             eeEEECCCCEEEEE--eCCEEEEEECCCCCEEEEEEecCC----CCcEEEEEECCC-CCEEE--EEE-------------
Confidence            3444 567777665  467899999999987654322211    112345666664 33432  331             


Q ss_pred             CCCcccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccC
Q 037927          180 NSRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVP  259 (329)
Q Consensus       180 ~~~~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~  259 (329)
                          ....+.||+..++.-  +..    +....      ..-..+..+|.+...+. .    ...+..+|..........
T Consensus       167 ----~Dg~v~iWd~~~~~~--~~~----~~~h~------~~v~~~s~~~~~l~sgs-~----d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          167 ----SSAEVQLWDVQQQKR--LRN----MTSHS------ARVGSLSWNSYILSSGS-R----SGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             ----TTSCEEEEETTTTEE--EEE----ECCCS------SCEEEEEEETTEEEEEE-T----TSEEEEEETTSSSCEEEE
T ss_pred             ----CCCeEEEEEcCCCcE--EEE----EeCCC------CceEEEeeCCCEEEEEe-C----CCceeEeeecccceeeEE
Confidence                245688999887642  111    11111      11114555666544444 3    567778887765443333


Q ss_pred             CCCCCCCCceeEEEEE-CCcEEEEEc-CCEEEEEEeee
Q 037927          260 KPDFDYAHQAMGLGVV-GGRLCLLAL-GANVELWVMKE  295 (329)
Q Consensus       260 lP~~~~~~~~~~l~~~-~g~L~~~~~-~~~l~vW~l~~  295 (329)
                      +.....  ....+... +|+..+... ...+.||....
T Consensus       226 ~~~h~~--~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          226 LSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EECCSS--CEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             eccccc--ceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            322221  12223322 556555555 77888887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-10
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-07
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	3e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	7e-06

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (124), Expect = 6e-10
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 2  SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDP 38
           +LPD++L+ + S L +  LL+    CK+W  L SD 
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 38

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 18/67 (26%), Positives = 25/67 (37%)

Query: 2  SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKRTARNSPPKILLSKR 61
          S LP ++ + VLS L  K LL+    C+ W  L  D      + K    + P  I   K 
Sbjct: 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKV 79

Query: 62 SLYSKDS 68
                 
Sbjct: 80 IKPGFIH 86

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 2   SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGF-ALLQYKRTARNSPPKILLSK 60
           +   D +   +LS L  KSL   +  CK+W  + SD      L  +    +S  + L  +
Sbjct: 16  ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAER 75

Query: 61  RSLYSKDSPLRSFDCSTTSLHDQRALTRLHF 91
           R         +  D +       RAL     
Sbjct: 76  RGWGQYLFKNKPPDGNAPPNSFYRALYPKII 106

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 2  SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLI-SDPGFALLQYKRTARNSPPKILLSK 60
          ++LP ++ +++ + L  + ++      + W  +I                 SP       
Sbjct: 7  TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLN 66

Query: 61 RSLYSKDSPLRSFDCS-TTSLHDQRALTRLHFP 92
            L  K   L   D    + L +   L   + P
Sbjct: 67 LKLSQKYPKLSQQDRLRLSFLENIFILKNWYNP 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.7
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.59
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.27
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.26
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.21
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.72
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.37

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.8e-12  Score=76.16  Aligned_cols=39  Identities=36%  Similarity=0.742  Sum_probs=36.7

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhH
Q 037927            2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGF   40 (329)
Q Consensus         2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F   40 (329)
                      +.||+|++.+||++||++++.|+++|||+|+.++.++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            689999999999999999999999999999999988763

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.2e-09  Score=75.33  Aligned_cols=47  Identities=32%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHHhhh
Q 037927            1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKR   47 (329)
Q Consensus         1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~~~~   47 (329)
                      ++.||+||+.+||++||+++|+++++|||+|+.++.++.+=+.+..+
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r   65 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            56899999999999999999999999999999999998876665544

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=5e-09  Score=75.10  Aligned_cols=39  Identities=13%  Similarity=0.422  Sum_probs=35.4

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcC-ChhH
Q 037927            2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLIS-DPGF   40 (329)
Q Consensus         2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~-~~~F   40 (329)
                      +.||+||+++||+.|++++|++++.|||+|+.+++ ++..
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            46999999999999999999999999999999985 5553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9.2e-06  Score=68.30  Aligned_cols=157  Identities=10%  Similarity=0.062  Sum_probs=98.0

Q ss_pred             CceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927          117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN  196 (329)
Q Consensus       117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~  196 (329)
                      -..+.++||.|++|..+|+++..+..  ...   ...   +. +++.++.....       .. .......+++|+..++
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~~--~~~---~~~---~~-~iyv~GG~~~~-------~~-~~~~~~~~~~yd~~~~   80 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRSG--LAG---CVV---GG-LLYAVGGRNNS-------PD-GNTDSSALDCYNPMTN   80 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS--CEE---EEE---TT-EEEEECCEEEE-------TT-EEEECCCEEEEETTTT
T ss_pred             CceEEEEECCCCeEEECCCCCCccce--eEE---EEE---CC-EEEEEeCcccC-------CC-Cccccchhhhcccccc
Confidence            35678999999999999988776542  111   111   12 34444322000       00 1233568899999999


Q ss_pred             ceEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCccccccCCCCCCCCCceeEEEEE
Q 037927          197 SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVV  275 (329)
Q Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~l~~~  275 (329)
                      +|+.++.    +|...     .... .+.++|.+|.++. .... .......+|+.+++|...+.+....  .....++.
T Consensus        81 ~w~~~~~----~p~~r-----~~~~-~~~~~~~i~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~  147 (288)
T d1zgka1          81 QWSPCAP----MSVPR-----NRIG-VGVIDGHIYAVGG-SHGCIHHNSVERYEPERDEWHLVAPMLTRR--IGVGVAVL  147 (288)
T ss_dssp             EEEECCC----CSSCC-----BTCE-EEEETTEEEEECC-EETTEECCCEEEEETTTTEEEECCCCSSCC--BSCEEEEE
T ss_pred             ccccccc----cccee-----ccee-ccccceeeEEecc-eecccccceeeeeccccCcccccccccccc--ccceeeee
Confidence            9999987    77655     2333 6888999999876 4322 1556788999999998774333222  23456677


Q ss_pred             CCcEEEEEc----CCEEEEEEeeeCCCccceEEe
Q 037927          276 GGRLCLLAL----GANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       276 ~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~  305 (329)
                      +++++++..    ...-.++.++..  ...|...
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~--~~~~~~~  179 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPE--RNEWRMI  179 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETT--TTEEEEC
T ss_pred             eecceEecCcccccccceEEEeecc--ccccccc
Confidence            888888776    222234555432  3457665

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-07  Score=69.08  Aligned_cols=43  Identities=30%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             cHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHHhhh
Q 037927            5 PDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQYKR   47 (329)
Q Consensus         5 P~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~~~~   47 (329)
                      +|||+..||+.|++++|+++.+|||+|+.+++++.+=+....+
T Consensus        19 ~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          19 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             CHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            3699999999999999999999999999999988776655433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.3e-05  Score=62.50  Aligned_cols=109  Identities=13%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             ccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCcccccc-CCC
Q 037927          184 IDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRV-PKP  261 (329)
Q Consensus       184 ~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i-~lP  261 (329)
                      ....+++|+..++.|.....    .+...     .... .+..+|.+|-.++ .... .......||+.+++|..+ +.|
T Consensus       162 ~~~~~~~~d~~~~~~~~~~~----~~~~~-----~~~~-~~~~~~~i~i~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~p  230 (288)
T d1zgka1         162 RLNSAECYYPERNEWRMITA----MNTIR-----SGAG-VCVLHNCIYAAGG-YDGQDQLNSVERYDVETETWTFVAPMK  230 (288)
T ss_dssp             BCCCEEEEETTTTEEEECCC----CSSCC-----BSCE-EEEETTEEEEECC-BCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred             ccceEEEeeccccccccccc----ccccc-----cccc-ccceeeeEEEecC-ccccccccceeeeeecceeeecccCcc
Confidence            34578999999999998876    44443     2222 6788999998876 4332 256788999999999987 444


Q ss_pred             CCCCCCceeEEEEECCcEEEEEc----CCEEEEEEeeeCCCccceEEeecc
Q 037927          262 DFDYAHQAMGLGVVGGRLCLLAL----GANVELWVMKEYGVKCSWQKHYCL  308 (329)
Q Consensus       262 ~~~~~~~~~~l~~~~g~L~~~~~----~~~l~vW~l~~~~~~~~W~~~~~~  308 (329)
                      ...   ....++..+|+|+++..    ...-.||+++-.  ...|+.+..|
T Consensus       231 ~~r---~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  276 (288)
T d1zgka1         231 HRR---SALGITVHQGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM  276 (288)
T ss_dssp             SCC---BSCEEEEETTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred             Ccc---cceEEEEECCEEEEEecCCCCeecceEEEEECC--CCEEEECCCC
Confidence            432   33566778999999875    222246777642  3569999333

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.72  E-value=0.00012  Score=63.85  Aligned_cols=149  Identities=9%  Similarity=0.016  Sum_probs=86.8

Q ss_pred             cCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCceEEecc
Q 037927          124 NPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEH  203 (329)
Q Consensus       124 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~  203 (329)
                      .|.+++|...++.+....       ..+..+..+  ||+.++...   ...   ..+........++|+..+++|...+.
T Consensus         5 ~p~~g~W~~~~~~p~~~~-------~~a~~~~~g--kv~v~GG~~---~~~---~~~~~~~~~~~~~yd~~t~~w~~~~~   69 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVPA-------AAAIEPTSG--RVLMWSSYR---NDA---FGGSPGGITLTSSWDPSTGIVSDRTV   69 (387)
T ss_dssp             CTTSCEEEEEEECSSCCS-------EEEEETTTT--EEEEEEECC---CTT---TCSCCCSEEEEEEECTTTCCBCCCEE
T ss_pred             CCCCCccCCcCCCCcccc-------EEEEEeeCC--EEEEEEeec---Ccc---cCCCCCceeEEEEEECCCCcEeecCC
Confidence            488999988766654431       123333333  666666431   000   00022334568999999999988765


Q ss_pred             cCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCCCCCCCCceeEEEE-ECCcEEE
Q 037927          204 SFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGV-VGGRLCL  281 (329)
Q Consensus       204 ~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~-~~g~L~~  281 (329)
                          ++...   ........+..+|.+|+.+. ..   ...+..||+.+++|..+ .+|...   .....+. .+|++++
T Consensus        70 ----~~~~~---~~~~~~~~~~~~g~i~v~Gg-~~---~~~~~~yd~~~~~w~~~~~~~~~r---~~~~~~~~~dG~v~v  135 (387)
T d1k3ia3          70 ----TVTKH---DMFCPGISMDGNGQIVVTGG-ND---AKKTSLYDSSSDSWIPGPDMQVAR---GYQSSATMSDGRVFT  135 (387)
T ss_dssp             ----EECSC---CCSSCEEEECTTSCEEEECS-SS---TTCEEEEEGGGTEEEECCCCSSCC---SSCEEEECTTSCEEE
T ss_pred             ----CCCCc---ccceeEEEEecCCcEEEeec-CC---CcceeEecCccCcccccccccccc---cccceeeecCCceee
Confidence                33222   10111114566899998876 43   35678899999999877 344332   2234444 4789998


Q ss_pred             EEc-------CCEEEEEEeeeCCCccceEEe
Q 037927          282 LAL-------GANVELWVMKEYGVKCSWQKH  305 (329)
Q Consensus       282 ~~~-------~~~l~vW~l~~~~~~~~W~~~  305 (329)
                      +..       ...+.+|...    ..+|+..
T Consensus       136 ~GG~~~~~~~~~~v~~yd~~----~~~W~~~  162 (387)
T d1k3ia3         136 IGGSWSGGVFEKNGEVYSPS----SKTWTSL  162 (387)
T ss_dssp             ECCCCCSSSCCCCEEEEETT----TTEEEEE
T ss_pred             eccccccccccceeeeecCC----CCceeec
Confidence            876       2334444333    3569887

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.37  E-value=0.00018  Score=62.75  Aligned_cols=108  Identities=10%  Similarity=0.116  Sum_probs=72.3

Q ss_pred             eEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCce
Q 037927          119 EIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSW  198 (329)
Q Consensus       119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W  198 (329)
                      ...+|||.|++|..+|++...+.. .  +.+....+.   =+++.++                ......+++|+..+++|
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~-~--~~~~~~~~~---g~i~v~G----------------g~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDM-F--CPGISMDGN---GQIVVTG----------------GNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCC-S--SCEEEECTT---SCEEEEC----------------SSSTTCEEEEEGGGTEE
T ss_pred             EEEEEECCCCcEeecCCCCCCccc-c--eeEEEEecC---CcEEEee----------------cCCCcceeEecCccCcc
Confidence            467999999999988776655432 1  112222222   2454444                22345789999999999


Q ss_pred             EEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCCcccccc
Q 037927          199 KKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRV  258 (329)
Q Consensus       199 ~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i  258 (329)
                      +..+.    +|...   . .. ...+..||.+|.+++ .....  ...+..||+.+++|..+
T Consensus       111 ~~~~~----~~~~r---~-~~-~~~~~~dG~v~v~GG-~~~~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3         111 IPGPD----MQVAR---G-YQ-SSATMSDGRVFTIGG-SWSGGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             EECCC----CSSCC---S-SC-EEEECTTSCEEEECC-CCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             ccccc----ccccc---c-cc-ceeeecCCceeeecc-ccccccccceeeeecCCCCceeec
Confidence            99887    77655   2 22 224556899999887 44322  45789999999999876